jadex.swing.sequence
Class AceDBCloneFetcher

java.lang.Object
  |
  +--jadex.swing.sequence.CloneFetcher
        |
        +--jadex.swing.sequence.AceDBCloneFetcher

public class AceDBCloneFetcher
extends CloneFetcher

This class is used to fetch SequenceMap information from AceDB directly for SequenceMap display.


Fields inherited from class jadex.swing.sequence.CloneFetcher
link
 
Constructor Summary
AceDBCloneFetcher()
          Default constructor
AceDBCloneFetcher(jade.db.JSAceAccessor ace, java.lang.String name)
          Third constructor: AceAccessor and Sequence_map name.
AceDBCloneFetcher(java.lang.String host, int port, java.lang.String name)
          Second constructor: AceDB host, port and Sequene_map object name.
 
Method Summary
 jade.db.AceAccessor getAccessor()
          Get the AceAccessor used in this Sequence_map dislay.
 java.lang.String getCloneInfor()
          Get all information about clones in the Sequence_map in a String.
 java.lang.String getName()
          Get the name of the displayed Sequence_map.
static void main(java.lang.String[] args)
           
 void setAccessor(jade.db.JSAceAccessor ace)
          Set the AceAccessor for this object.
 void setName(java.lang.String name)
          Set the name of the Sequence_map to be displayed.
 
Methods inherited from class jadex.swing.sequence.CloneFetcher
fetchClone, getClone, getClone, getContig, getMapName, getMapScale
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

AceDBCloneFetcher

public AceDBCloneFetcher()
Default constructor

AceDBCloneFetcher

public AceDBCloneFetcher(java.lang.String host,
                         int port,
                         java.lang.String name)
Second constructor: AceDB host, port and Sequene_map object name.
Parameters:
host - the AceDB host name.
port - the port number of the AceDB.
name - the name of the Sequence_map.

AceDBCloneFetcher

public AceDBCloneFetcher(jade.db.JSAceAccessor ace,
                         java.lang.String name)
Third constructor: AceAccessor and Sequence_map name.
Parameters:
ace - the AceAccessor used to access the information of AceDB.
name - the name of the Sequence_map to be displayed.
Method Detail

setName

public void setName(java.lang.String name)
Set the name of the Sequence_map to be displayed.
Parameters:
name - the name of the sequence_map.

getName

public java.lang.String getName()
Get the name of the displayed Sequence_map.
Returns:
the name of the displayed Sequence_map.

setAccessor

public void setAccessor(jade.db.JSAceAccessor ace)
Set the AceAccessor for this object.
Parameters:
ace - the AceAccessor used for this object.

getAccessor

public jade.db.AceAccessor getAccessor()
Get the AceAccessor used in this Sequence_map dislay.
Returns:
the AceAccessor used in this Sequence_map.

getCloneInfor

public java.lang.String getCloneInfor()
Get all information about clones in the Sequence_map in a String.
Overrides:
getCloneInfor in class CloneFetcher
Returns:
a String containing all clone information in the Sequence_map.

main

public static void main(java.lang.String[] args)