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SUMMARY: INNER | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Object | +--jadex.swing.classView.ClassView | +--jadex.swing.classView.SequenceView
A Sequence graphics view for chromosome and other sequence objects
Field Summary | |
static java.lang.String |
WORMBASE
This is a URL address all XML files of chromosomes should be in. |
Constructor Summary | |
SequenceView()
Creates new SequenceView |
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SequenceView(java.lang.String name)
Second constructor |
Method Summary | |
void |
clear()
Clear up. |
jade.db.AceObject |
getObject()
No aceobject anymore. |
javax.swing.JComponent |
getView()
Get the JComponent holding this SequenceView. |
javax.swing.JFrame |
getViewFrame()
Override the super method. |
static void |
main(java.lang.String[] args)
A test method. |
void |
search(java.lang.String name)
Search a sequence object in the displayed chromosome. |
void |
setObject(jade.db.AceObject object)
AceObject will not be supported anymore. |
void |
setSequence(java.lang.String name)
Set the name of the chromosome to be displayed. |
void |
setView(javax.swing.JComponent comp)
Do nothing. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
public static java.lang.String WORMBASE
Constructor Detail |
public SequenceView()
public SequenceView(java.lang.String name)
name
- the chromosome nameMethod Detail |
public void setSequence(java.lang.String name)
name
- the name of the chromosome to be displayed, e.g., Chromosome_I.public void search(java.lang.String name)
name
- the name of the sequence object to be searched.public void setObject(jade.db.AceObject object) throws java.lang.UnsupportedOperationException
setObject
in class ClassView
object
- the AceObject to be displayed.java.lang.UnsupportedOperationException
- if this sequence view cannot be displayed.public jade.db.AceObject getObject()
getObject
in class ClassView
public javax.swing.JComponent getView()
getView
in class ClassView
public void setView(javax.swing.JComponent comp)
setView
in class ClassView
jadex.swing.classView.ClassView
comp
- the JComponent to be used for displaying this AceObject.public javax.swing.JFrame getViewFrame()
getViewFrame
in class ClassView
public void clear()
public static void main(java.lang.String[] args)
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