Serialized Form


Package jadex.swing

Class jadex.swing.AceDBFrame implements Serializable

Serialized Fields

ivjJFrameContentPane

javax.swing.JPanel ivjJFrameContentPane

ivjJSplitPane1

javax.swing.JSplitPane ivjJSplitPane1

ivjJTree2

javax.swing.JTree ivjJTree2

fieldNames

java.util.Vector fieldNames

ivjJScrollPane1

javax.swing.JScrollPane ivjJScrollPane1

ivjAceModel

AceModel ivjAceModel

ivjJTabbedPane1

javax.swing.JTabbedPane ivjJTabbedPane1

ivjPage

javax.swing.JPanel ivjPage

controller

ClassViewController controller

first

WelcomePane first

lastPath

javax.swing.tree.TreePath lastPath

currentPath

javax.swing.tree.TreePath currentPath

title

java.lang.String title

DATABASE_NAME

java.lang.String DATABASE_NAME

host

java.lang.String host

port

int port

Class jadex.swing.ClassDisplayer implements Serializable

Serialized Fields

ivjJPanel1

javax.swing.JPanel ivjJPanel1

ivjJLabel1

javax.swing.JLabel ivjJLabel1

ivjJLabel2

javax.swing.JLabel ivjJLabel2

ivjJLabel3

javax.swing.JLabel ivjJLabel3

name

java.lang.String name

count

int count

ivjIndexSelector1

IndexSelector ivjIndexSelector1

ivjJPanel2

javax.swing.JPanel ivjJPanel2

ivjJPanel2GridLayout

java.awt.GridLayout ivjJPanel2GridLayout

model

ClassDisplayerModel model

buttonAllEnable

boolean buttonAllEnable

ivjJLabelAll

javax.swing.JLabel ivjJLabelAll

Class jadex.swing.ClassListDisplayer implements Serializable

Serialized Fields

ivjJToolBar1

javax.swing.JToolBar ivjJToolBar1

ivjJPanel3

javax.swing.JPanel ivjJPanel3

ivjJPanel3GridLayout

java.awt.GridLayout ivjJPanel3GridLayout

ivjJPanel1

javax.swing.JPanel ivjJPanel1

ivjJPanel1GridLayout

java.awt.GridLayout ivjJPanel1GridLayout

model

ClassListModel model

ivjAllButton

javax.swing.JButton ivjAllButton

ivjLetterBox

javax.swing.JComboBox ivjLetterBox

ivjLetterLabel

javax.swing.JLabel ivjLetterLabel

ivjNextButton

javax.swing.JButton ivjNextButton

ivjPageBox

javax.swing.JComboBox ivjPageBox

ivjPageLabel

javax.swing.JLabel ivjPageLabel

ivjPreviouseButton

javax.swing.JButton ivjPreviouseButton

className

java.lang.String className

mediator

ClassListMediator mediator

ivjModel

ClassListModel ivjModel

ivjJPanel2

javax.swing.JPanel ivjJPanel2

totalPage

int totalPage

currentPanel

javax.swing.JPanel currentPanel

ivjJPanel4

javax.swing.JPanel ivjJPanel4

Class jadex.swing.GeneticMapApplet implements Serializable

Serialized Fields

aceobject

java.lang.String aceobject

host

java.lang.String host

port

int port

cls

java.lang.String cls

obj

java.lang.String obj

jButton1

javax.swing.JButton jButton1

jLabel1

javax.swing.JLabel jLabel1

Class jadex.swing.IndexSelector implements Serializable

Serialized Fields

index

javax.swing.JLabel[] index

ivjIndexSelectorGridLayout

java.awt.GridLayout ivjIndexSelectorGridLayout

Class jadex.swing.ObjectLabel implements Serializable

Serialized Fields

localObj

jade.db.AceObject localObj

Class jadex.swing.ProgressPanel implements Serializable

Serialized Fields

ivjJButton1

javax.swing.JButton ivjJButton1

ivjJLabel1

javax.swing.JLabel ivjJLabel1

ivjJProgressBar1

javax.swing.JProgressBar ivjJProgressBar1

Class jadex.swing.SearchPanel implements Serializable

Serialized Fields

ivjJButton1

javax.swing.JButton ivjJButton1

ivjJLabel1

javax.swing.JLabel ivjJLabel1

ivjJLabel2

javax.swing.JLabel ivjJLabel2

ivjJPanel1

javax.swing.JPanel ivjJPanel1

ivjJPanel2

javax.swing.JPanel ivjJPanel2

ivjJTextField1

javax.swing.JTextField ivjJTextField1

ivjSearchPanelGridLayout

java.awt.GridLayout ivjSearchPanelGridLayout

dbFrame

AceDBFrame dbFrame

ivjJComboBox1

javax.swing.JComboBox ivjJComboBox1

frame

javax.swing.JFrame frame

Class jadex.swing.ViewSettingPanel implements Serializable

Serialized Fields

jComboBox1

javax.swing.JComboBox jComboBox1

jTextField1

javax.swing.JTextField jTextField1

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jButton1

javax.swing.JButton jButton1

jButton2

javax.swing.JButton jButton2

box2

javax.swing.JComboBox box2

dbFrame

AceDBFrame dbFrame

viewProp

java.util.Properties viewProp

frame

javax.swing.JFrame frame

details

javax.swing.JTextArea details

taPanel

javax.swing.JPanel taPanel

showDetails

boolean showDetails

propName

java.lang.String propName

Class jadex.swing.WelcomePane implements Serializable

Serialized Fields

ivjJLabel1

javax.swing.JLabel ivjJLabel1

fieldMessage

java.lang.String fieldMessage


Package jadex.swing.classView

Class jadex.swing.classView.MapViewContainer implements Serializable

Serialized Fields

marker

LocusPanel marker

markerPanel

javax.swing.JPanel markerPanel

locator

MapCartoon locator

locatorPanel

javax.swing.JPanel locatorPanel

markerAndLocatorPanel

javax.swing.JPanel markerAndLocatorPanel

rangeControl

RangeControlPanel rangeControl

controlPanel

javax.swing.JPanel controlPanel

leftScale

MapScale1 leftScale

rightScale

MapScale1 rightScale

scalePane1

javax.swing.JPanel scalePane1

scalePane2

javax.swing.JPanel scalePane2

container

javax.swing.JPanel container

menubar

MapViewContainerMenuBar menubar

control

MapControl control

Class jadex.swing.classView.MapViewContainerMenuBar implements Serializable

Serialized Fields

container

MapViewContainer container

viewMenu

javax.swing.JMenu viewMenu

items

javax.swing.JMenu items

itemMap

java.util.Map itemMap

helpMenu

javax.swing.JMenu helpMenu

fileMenu

javax.swing.JMenu fileMenu

open

javax.swing.JMenuItem open

dFont

java.awt.Font dFont


Package jadex.swing.map

Class jadex.swing.map.ControlPanel implements Serializable

Serialized Fields

jPanel3

javax.swing.JPanel jPanel3

jLabel1

javax.swing.JLabel jLabel1

jRadioButton1

javax.swing.JRadioButton jRadioButton1

jRadioButton2

javax.swing.JRadioButton jRadioButton2

jPanel5

javax.swing.JPanel jPanel5

jLabel2

javax.swing.JLabel jLabel2

jCheckBox1

javax.swing.JCheckBox jCheckBox1

jCheckBox2

javax.swing.JCheckBox jCheckBox2

jCheckBox3

javax.swing.JCheckBox jCheckBox3

jCheckBox4

javax.swing.JCheckBox jCheckBox4

jCheckBox5

javax.swing.JCheckBox jCheckBox5

jPanel6

javax.swing.JPanel jPanel6

jLabel3

javax.swing.JLabel jLabel3

jComboBox1

javax.swing.JComboBox jComboBox1

jLabel4

javax.swing.JLabel jLabel4

jComboBox2

javax.swing.JComboBox jComboBox2

jPanel7

javax.swing.JPanel jPanel7

jButton1

javax.swing.JButton jButton1

jButton2

javax.swing.JButton jButton2

jButton3

javax.swing.JButton jButton3

frame

java.awt.Container frame

deFont

java.awt.Font deFont

Class jadex.swing.map.DisplayPopup implements Serializable

Serialized Fields

control

DisplayControl control

display

MapPointDisplay display

more

javax.swing.JMenuItem more

less

javax.swing.JMenuItem less

reset

javax.swing.JMenuItem reset

columnLayout

javax.swing.JRadioButton columnLayout

smartLayout

javax.swing.JRadioButton smartLayout

count

int count

cls

java.lang.String cls

Class jadex.swing.map.DownKnob implements Serializable

Serialized Fields

isBottom

boolean isBottom

Class jadex.swing.map.HelpPane implements Serializable

Class jadex.swing.map.IntervalContainer implements Serializable

Serialized Fields

panels

java.util.Vector panels

intervals

java.util.Vector intervals

extend

float extend

range

MapRange range

popup

javax.swing.JPopupMenu popup

control

MapControl control

Class jadex.swing.map.IntervalPanel implements Serializable

Serialized Fields

intervals

java.util.Vector intervals

range

MapRange range

extend

float extend

offset

float offset

Class jadex.swing.map.IntervalUI implements Serializable

Serialized Fields

start

float start

end

float end

w

float w

h

float h

name

java.lang.String name

range

MapRange range

background

java.awt.Color background

forIn

java.awt.Color forIn

forOut

java.awt.Color forOut

foreground

java.awt.Color foreground

fontM

java.awt.FontMetrics fontM

lineM

java.awt.font.LineMetrics lineM

deFont

java.awt.Font deFont

interval

jade.db.AceObject interval

control

MapControl control

pop

javax.swing.JPopupMenu pop

url

java.lang.String url

Class jadex.swing.map.Knob implements Serializable

Serialized Fields

size

java.awt.Dimension size

control

DisplayControl control

mouseIn

boolean mouseIn

Class jadex.swing.map.LocusDisplay implements Serializable

Serialized Fields

range

MapRange range

map

MapRange map

control

LocusControl control

loci

MapPoint[] loci

sTotal

MapPoint[] sTotal

lUI

LocusUI[] lUI

points

java.util.Vector points

REL

float REL

yPadding

float yPadding

xPadding

float xPadding

rightP

float rightP

offset

float offset

rel

float rel

zoom

java.awt.geom.Rectangle2D.Float zoom

inX

float inX

inY

float inY

outX

float outX

outY

float outY

mag

Magnifier mag

cShown

boolean cShown

mouseInName

java.lang.String mouseInName

pop2

javax.swing.JPopupMenu pop2

topKnob

Knob topKnob

bottomKnob

Knob bottomKnob

pColor

java.awt.Color pColor

vColor

java.awt.Color vColor

hColor

java.awt.Color hColor

cColor

java.awt.Color cColor

bColor

java.awt.Color bColor

nColor

java.awt.Color nColor

highLightColor

java.awt.Color highLightColor

layout

LocusLayout layout

columnLayout

LocusLayout columnLayout

smartLayout

LocusLayout smartLayout

mini

MiniMapCartoon mini

Class jadex.swing.map.LocusPanel implements Serializable

Serialized Fields

loci

java.util.Vector loci

DIFF

float DIFF

REL

float REL

range

MapRange range

extend

float extend

offset

float offset

Class jadex.swing.map.LocusShow implements Serializable

Class jadex.swing.map.LocusUI implements Serializable

Serialized Fields

locus

jade.db.AceObject locus

accessor

jade.db.AceAccessor accessor

isClone

boolean isClone

position

float position

error

float error

name

java.lang.String name

showName

boolean showName

background

java.awt.Color background

foreIn

java.awt.Color foreIn

foreOut

java.awt.Color foreOut

foreground

java.awt.Color foreground

debug

boolean debug

url

java.lang.String url

Class jadex.swing.map.MapCartoon implements Serializable

Serialized Fields

WIDTH

float WIDTH

inX

float inX

inY

float inY

outX

float outX

outY

float outY

relInX

float relInX

relInY

float relInY

relOutX

float relOutX

relOutY

float relOutY

alpha

float alpha

composite

java.awt.AlphaComposite composite

rule

int rule

start

boolean start

dragging

boolean dragging

inScale

boolean inScale

drawing

java.awt.Shape drawing

cartoon

java.awt.Shape cartoon

top

boolean top

bottom

boolean bottom

popup

boolean popup

popY

int popY

w

float w

h

float h

mainLoci

jade.db.AceObject[] mainLoci

paddingY

float paddingY

TOTAL_LENGTH_LONG

long TOTAL_LENGTH_LONG

TOTAL_LENGTH_FLOAT

float TOTAL_LENGTH_FLOAT

control

MapControl control

debug

boolean debug

range

MapRange range
Holds value of property range.

map

MapRange map

Class jadex.swing.map.MapMenuBar implements Serializable

Serialized Fields

frame

javax.swing.JInternalFrame frame

f

javax.swing.JFrame f

dFont

java.awt.Font dFont

view

MapView view

accessor

jade.db.AceAccessor accessor

connectP

jadeSocket.ConnectPanel connectP

mk

javax.swing.JCheckBox mk

locator

javax.swing.JCheckBox locator

loci

javax.swing.JCheckBox loci

it

javax.swing.JCheckBox it

scaleLeft

javax.swing.JCheckBox scaleLeft

scaleRight

javax.swing.JCheckBox scaleRight

viewMenu

javax.swing.JMenu viewMenu

helpMenu

javax.swing.JMenu helpMenu

file

javax.swing.JMenu file

isApplet

boolean isApplet

connectProp

java.beans.PropertyChangeListener connectProp

Class jadex.swing.map.MapScale implements Serializable

Serialized Fields

range

MapRange range
Holds value of property range.

Class jadex.swing.map.MapScale1 implements Serializable

Serialized Fields

range

MapRange range

extend

float extend

end

float end

TOTAL_TICK

int TOTAL_TICK

Class jadex.swing.map.MiniMapCartoon implements Serializable

Serialized Fields

range

MapRange range

map

MapRange map

marker

MapPoint[] marker

rel

float rel

Class jadex.swing.map.RangeControlPanel implements Serializable

Serialized Fields

control

MapControl control

jPanel1

javax.swing.JPanel jPanel1

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jTextField1

javax.swing.JTextField jTextField1

jLabel3

javax.swing.JLabel jLabel3

jTextField2

javax.swing.JTextField jTextField2

jButton4

javax.swing.JButton jButton4

jPanel2

javax.swing.JPanel jPanel2

jButton3

javax.swing.JButton jButton3

zoomButtons

ZoomButtonControl zoomButtons

Class jadex.swing.map.UnknownPositionException implements Serializable

Class jadex.swing.map.UpKnob implements Serializable

Serialized Fields

isTop

boolean isTop

Class jadex.swing.map.ZoomButtonControl implements Serializable

Serialized Fields

control

MapControl control

map

MapRange map

extend

float extend

step

float step

Class jadex.swing.map.ZoomPopupMenu implements Serializable

Serialized Fields

panel

MapZoom panel

f

javax.swing.JFrame f

deFont

java.awt.Font deFont

STEP

int STEP

count

int count

up

java.awt.event.ActionListener up

down

java.awt.event.ActionListener down

reset

java.awt.event.ActionListener reset


Package jadex.swing.sequence

Class jadex.swing.sequence.CloneDisplay implements Serializable

Serialized Fields

control

CloneControl control

clones

java.util.List clones

assClones

java.util.List assClones

names

LocusUI[] names

range

MapRange range

cShown

boolean cShown

mouseInName

java.lang.String mouseInName

xPadding

float xPadding

yPadding

float yPadding

CLONE_WIDTH

float CLONE_WIDTH

TOTAL_COLUMN

int TOTAL_COLUMN

rel

float rel

offset

float offset

verticalP

float verticalP

zoom

java.awt.geom.Rectangle2D.Float zoom

upKnob

Knob upKnob

downKnob

Knob downKnob

pop

DisplayPopup pop

layout

LocusLayout layout

columnLayout

LocusLayout columnLayout

smartLayout

LocusLayout smartLayout

mag

Magnifier mag

Class jadex.swing.sequence.CloneUI implements Serializable

Serialized Fields

name

java.lang.String name

clone

Clone clone

MOUSE_IN_COLOR

java.awt.Color MOUSE_IN_COLOR

MOUSE_OUT_COLOR

java.awt.Color MOUSE_OUT_COLOR

foreColor

java.awt.Color foreColor

Class jadex.swing.sequence.GeneRenderer implements Serializable

Serialized Fields

background

java.awt.Color background

foreground

java.awt.Color foreground

exons

java.util.List exons

xPadding

float xPadding

yPadding

float yPadding

totalBp

long totalBp

Class jadex.swing.sequence.HorizontalMapScale implements Serializable

Serialized Fields

range

MapRange range

extend

long extend

start

long start

TOTAL_TICK

int TOTAL_TICK

labelFont

java.awt.Font labelFont

xPadding

float xPadding

Class jadex.swing.sequence.HorizontalMiniMapCartoon implements Serializable

Serialized Fields

range

MapRange range

fullRange

MapRange fullRange

fullColor

java.awt.Color fullColor

displayColor

java.awt.Color displayColor

xPadding

float xPadding

yPadding

float yPadding

Class jadex.swing.sequence.RangeSpecifyDialog implements Serializable

Serialized Fields

propertyChangeSupport

java.beans.PropertyChangeSupport propertyChangeSupport

jPanel1

javax.swing.JPanel jPanel1

jLabel4

javax.swing.JLabel jLabel4

jLabel5

javax.swing.JLabel jLabel5

jTextField3

javax.swing.JTextField jTextField3

jLabel6

javax.swing.JLabel jLabel6

jTextField4

javax.swing.JTextField jTextField4

jButton1

javax.swing.JButton jButton1

jButton2

javax.swing.JButton jButton2

Class jadex.swing.sequence.SequenceDisplay implements Serializable

Serialized Fields

renderer

SequenceRenderer renderer

geneRenderer

GeneRenderer geneRenderer

model

SequenceModel model

selectionModel

SequenceSelectionModel selectionModel

layoutModel

SequenceLayoutModel layoutModel

popup

javax.swing.JPopupMenu popup

Class jadex.swing.sequence.SequenceElementTableView implements Serializable

Serialized Fields

table

javax.swing.JTable table

Class jadex.swing.sequence.SequenceMapApplet implements Serializable

Serialized Fields

jLabel1

javax.swing.JLabel jLabel1

jButton1

javax.swing.JButton jButton1

Class jadex.swing.sequence.SequenceRenderer implements Serializable

Serialized Fields

selectionForeground

java.awt.Color selectionForeground

selectionBackground

java.awt.Color selectionBackground

background

java.awt.Color background

foreground

java.awt.Color foreground

lineColor

java.awt.Color lineColor

isPlus

boolean isPlus

xPadding

float xPadding

yPadding

float yPadding

nameLabel

javax.swing.JLabel nameLabel

Class jadex.swing.sequence.SequenceSelectionEvent implements Serializable

Serialized Fields

sequence

org.jdom.Element sequence

isSelected

boolean isSelected

isMultiSelected

boolean isMultiSelected

list

java.util.List list

Class jadex.swing.sequence.SequenceTreeDisplay implements Serializable

Serialized Fields

tree

javax.swing.JTree tree

treeModel

javax.swing.tree.TreeModel treeModel

contentPane

javax.swing.JTabbedPane contentPane

sp

javax.swing.JScrollPane sp

selectionListener

javax.swing.event.TreeSelectionListener selectionListener

Class jadex.swing.sequence.SequenceUI implements Serializable

Serialized Fields

rendererPane

javax.swing.CellRendererPane rendererPane

display

SequenceDisplay display

mouseHandler

javax.swing.event.MouseInputListener mouseHandler

selectionHandler

jadex.swing.sequence.SequenceUI.SelectionEventHandler selectionHandler

propertyHandler

jadex.swing.sequence.SequenceUI.PropertyChangeHandler propertyHandler

layoutModel

SequenceLayoutModel layoutModel

currentLayer

int currentLayer

doSelection

boolean doSelection

paintBounds

java.awt.Rectangle paintBounds

connColor

java.awt.Color connColor

Class jadex.swing.sequence.SequenceViewApplet implements Serializable

Serialized Fields

saxdriver

java.lang.String saxdriver

viewFactory

SequenceViewFactory viewFactory


Package jadex.swing.util

Class jadex.swing.util.TestPanel implements Serializable

Serialized Fields

zoom

java.awt.geom.Rectangle2D.Float zoom

pos

float pos


Package jadex.xml

Class jadex.xml.XMLParserAndValidation implements Serializable

Serialized Fields

jPanel1

javax.swing.JPanel jPanel1

jButton1

javax.swing.JButton jButton1

jButton2

javax.swing.JButton jButton2