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java.lang.Object | +--jadex.swing.sequence.Clone
This wrapper class contains information about a clone. An individual clone is a MapPoint, but it also has a MapRange.
Constructor Summary | |
Clone()
Creates new Clone |
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Clone(java.lang.String n)
Another constructor with name as a argument |
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Clone(java.lang.String n,
MapRange r)
Third constructor with name and maprange as arguements |
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Clone(java.lang.String n,
MapRange r,
Contig ctg)
Fourth constructor with name, mapRange, and contig |
Method Summary | |
boolean |
equals(Clone another)
Comparae if two clones are equal. |
jade.db.AceObject |
getAceObject()
Get the wrapped AceObject for this clone. |
float |
getError()
No error data from AceDB |
MapRange |
getMapRange()
Get the MapRange of the clone. |
java.lang.String |
getName()
Get the name of the clone. |
float |
getPosition()
Get the position of the clone. |
void |
setAceObject(jade.db.AceObject o)
The the wrapped AceObject for this clone. |
void |
setContig(Contig ctg)
Set the contig this clone belongs to. |
void |
setError(float err)
Do nothing |
void |
setMapRange(MapRange r)
Set the MapRange of the clone. |
void |
setName(java.lang.String name)
Set the name of the clone. |
void |
setPMap(MapRange r)
Set the PMap of the clone if any. |
void |
setPosition(float position)
Set the position of the clone. |
java.lang.String |
toString()
A overrode method for pretty-printing. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public Clone()
public Clone(java.lang.String n)
public Clone(java.lang.String n, MapRange r)
public Clone(java.lang.String n, MapRange r, Contig ctg)
Method Detail |
public java.lang.String getName()
getName
in interface MapPoint
public MapRange getMapRange()
public float getPosition() throws UnknownPositionException
getPosition
in interface MapPoint
throw
- an unknownPositionException when the position is unknown.public void setName(java.lang.String name)
setName
in interface MapPoint
name
- the name of the clone.public void setMapRange(MapRange r)
r
- the MapRange of the clone.public void setPMap(MapRange r)
r
- the PMap of the clone.public void setPosition(float position)
setPosition
in interface MapPoint
position
- the position of the clone.public void setContig(Contig ctg)
ctg
- the contig of the clone.public void setError(float err)
setError
in interface MapPoint
jadex.swing.map.MapPoint
err
- the error of the positionpublic float getError()
getError
in interface MapPoint
jadex.swing.map.MapPoint
public void setAceObject(jade.db.AceObject o)
o
- the wrapped AceObject for this clone.public jade.db.AceObject getAceObject()
public boolean equals(Clone another)
another
- the compared clone.public java.lang.String toString()
toString
in class java.lang.Object
java.lang.Object
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