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java.lang.Object | +--jadex.swing.sequence.Contig
A wrapper class for Contig.
Constructor Summary | |
Contig()
Creates new Contig |
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Contig(java.lang.String name)
Second constructor with name as the arguemnt |
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Contig(java.lang.String name,
java.lang.String map)
Third constructor with name, map as the arguement |
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Contig(java.lang.String name,
java.lang.String map,
MapRange ext,
MapRange pm)
Fourth constructor with all properties as the arguments |
Method Summary | |
jade.db.AceObject |
getAceObject()
Get the wrapped AceObject for this Contig. |
MapRange |
getExtend()
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MapRange |
getExtendF()
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java.lang.String |
getMap()
Get the name of the Sequence_map this contig is in. |
java.lang.String |
getName()
Get the name of the contig. |
MapRange |
getPMap()
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MapRange |
getRangeFromPMap(MapRange p)
Transfer the PMap range to SequenceMap range. |
void |
setAceObject(jade.db.AceObject o)
Set the wrapped AceObject for this Contig. |
void |
setExtend(MapRange r)
Set the MapRange if contig in Sequence_map. |
void |
setExtendF(MapRange r)
Set the MapRange of contig in GeneticMap |
void |
setMap(java.lang.String map)
Set the name of the Sequence_map this contig is in. |
void |
setName(java.lang.String name)
Set the name of the contig. |
void |
setPMap(MapRange r)
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java.lang.String |
toString()
For pretty-printing purpose. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
public Contig()
public Contig(java.lang.String name)
public Contig(java.lang.String name, java.lang.String map)
public Contig(java.lang.String name, java.lang.String map, MapRange ext, MapRange pm)
Method Detail |
public MapRange getRangeFromPMap(MapRange p)
p
- the PMap.public void setName(java.lang.String name)
name
- the name of the contig.public java.lang.String getName()
public void setMap(java.lang.String map)
map
- the name of the Sequence_map this contig is in.public java.lang.String getMap()
public void setExtend(MapRange r)
public MapRange getExtend()
public void setExtendF(MapRange r)
public MapRange getExtendF()
public void setPMap(MapRange r)
public MapRange getPMap()
public void setAceObject(jade.db.AceObject o)
o
- the wrapped AceObject.public jade.db.AceObject getAceObject()
public java.lang.String toString()
toString
in class java.lang.Object
java.lang.Object
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