grp_id: ID of phenotype group (gene_id) grp_chr: chromosome of phenotype group (gene) grp_start, grp_end: start and end positions of phenotype group (gene) grp_strand: strand of phenotype group (gene) intron: intron identifier formatted as per leafcutter (chromosome:start:end:clu_clusterid_clusterstrand_stimulants_timepoint) n_intron_in_grp: number of phenotypes (introns) in the phenotype group (gene) n_var_in_cis: number of variants in the cis window of the phenotype group (1mbp of gene start position) dist_intron_var: distance between variant and phenotype (intron) var_id: variant rsid (if available. otherwise variant_chr:position) var_chr: variant chromosome variant_start, variant_end: variant start and end positions dof1: number of degrees of freedom used to compute the p-values (see https://qtltools.github.io/qtltools/) dof2: estimated number of degrees of freedom used in beta approximation p-value calculations (see https://qtltools.github.io/qtltools/) bml1: first shape parameter of the fitted beta distribution (alpha parameter; see https://qtltools.github.io/qtltools/) bml2: second shape parameter of the fitted beta distribution (beta parameter). This corresponds to the effective number of independent tests in the region (see https://qtltools.github.io/qtltools/) pvalue_nominal: nominal p-value of the association between the most significant variant and the phenotype group (gene). r_squared: R^2 of the linear regression between phenotype (intron) and variant slope: beta (slope) of the linear regression between phenotype (intron) and variant adj_emp_pval: adjusted empirical p-value from 1000 permutations adj_beta_pval: adjusted empirical p-value given by the fitted beta distribution