Ascaris summ genome (draft)

Sequencing:
Illumina GAIIx PE 108 bases, insert size ~300bp,  7 Gbases ~19x (assuming 350Mb genome size)
Illumina HiSeq PE 108 bases, insert size ~300bp, 17 Gbases ~49x (assuming 350Mb genome size)
Total: 24 Gbases 68x coverage

ABySS (v1.2.7) assembly (k50):

Files:

- README.txt .- This file
- supercontigs_gt500.fasta .- Contains scaffolds and singleton contigs with a 
length equal or greater than 500 bases.
- supercontigs_gt500.agp .- Scaffolding information in AGP format.
- contigs.fasta .- Splitted contigs from scaffolds plus singleton contigs.

Assembly Stats:
(fragments >= 500 bp, contigs and scaffolds)
Number of scaffolds	90,631	
N50 of the scaffolds	11,133	
N50 number	12,925
N90 of the scaffolds	2,571	
N90 number	50,846
Average length of the scaffolds	5,886	
Maximum scaffold length	207,409	
Total number of bp of assembled sequence	527,706,158(without Ns)

Number of contigs	106,451	
N50 of the contigs	8,691	
N50 number	16,808	
N90 of the contigs	2,156	
N90 number	62,314	
Average length of the contigs	4,884	
Maximum contig length	114,086	
Total number of bp of assembled sequence	519,951,655

NOTES: 
-Mitochondrial genome is still present.
-Samples might have some pig contamination.