FASTA searches a protein or DNA sequence data bank
 version 3.3t08 Jan. 17, 2001
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

/nfs/disk222/yeastpub3/Pseudomonas/fluorescens/who: 86 aa
 >PFLU1031 PFLU1031  1141925:1142185 reverse MW:9696
 vs  UNIPROT library
searching /data/blastdb/uniprot-1 0 library

606471847 residues in 1896046 sequences
 statistics extrapolated from 60000 to 1895822 sequences
  Expectation_n fit: rho(ln(x))= 5.5208+/-0.000189; mu= -1.8978+/- 0.011
 mean_var=76.0350+/-16.384, 0's: 200 Z-trim: 1  B-trim: 0 in 0/65
 Lambda= 0.1471

FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)xS] ktup: 2
 join: 36, opt: 24, gap-pen: -12/ -2, width:  16
 Scan time: 81.883
The best scores are:                                       opt z-sc E(1895822)
Q88E52_PSEPK Q88E52 Hypothetical protein.          (  87)  471  564.1 2.5e-23  LINK:Q88E52_PSEPK
Q9HYJ2_PSEAE Q9HYJ2 Hypothetical protein.          (  88)  440  528.4 2.4e-21  LINK:Q9HYJ2_PSEAE
Q887T9_PSESM Q887T9 Hypothetical protein.          (  88)  335  408.0 1.2e-14  LINK:Q887T9_PSESM
Q8ZFD7_YERPE Q8ZFD7 Hypothetical protein YPO1777   ( 106)  152  197.0  0.0069  LINK:Q8ZFD7_YERPE
Q66BW3_YERPS Q66BW3 Hypothetical protein.          ( 106)  152  197.0  0.0069  LINK:Q66BW3_YERPS
Q5QU66_IDILO Q5QU66 Uncharacterized conserved pro  ( 104)  147  191.4   0.014  LINK:Q5QU66_IDILO
YEBG_ECOLI P33220 Hypothetical protein yebG.       (  96)  141  185.0   0.032  LINK:YEBG_ECOLI
Q9KPP0_VIBCH Q9KPP0 Hypothetical protein VC2326.   ( 102)  140  183.4   0.039  LINK:Q9KPP0_VIBCH
Q8Z5X4_SALTI Q8Z5X4 Hypothetical protein STY2088   (  96)  133  175.8     0.1  LINK:Q8Z5X4_SALTI
Q7MI98_VIBVY Q7MI98 Hypothetical protein VV2619.   ( 104)  130  171.9    0.17  LINK:Q7MI98_VIBVY
Q8DBM3_VIBVU Q8DBM3 Hypothetical protein.          ( 104)  130  171.9    0.17  LINK:Q8DBM3_VIBVU
Q8ZNW6_SALTY Q8ZNW6 DNA damage-inducible gene in   (  96)  129  171.2    0.19  LINK:Q8ZNW6_SALTY
Q57NB8_SALET Q57NB8 DNA damage-inducible gene in   (  96)  129  171.2    0.19  LINK:Q57NB8_SALET
Q87M79_VIBPA Q87M79 DNA damage-inducible gene in   (  98)  128  169.9    0.22  LINK:Q87M79_VIBPA
Q8EDY6_SHEON Q8EDY6 Hypothetical protein SO2604.   (  99)  124  165.3     0.4  LINK:Q8EDY6_SHEON
Q5E7C4_VIBF1 Q5E7C4 Hypothetical protein.          (  96)  120  160.9    0.71  LINK:Q5E7C4_VIBF1
Q6LMY9_PHOPR Q6LMY9 Putative DNA damage-inducible  ( 102)  112  151.3     2.4  LINK:Q6LMY9_PHOPR

>>Q88E52_PSEPK Q88E52 Hypothetical protein.               (87 aa)
 initn: 467 init1: 467 opt: 471  Z-score: 564.1  bits: 108.8 E(): 2.5e-23
Smith-Waterman score: 471;  89.412% identity (89.412% ungapped) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
PFLU10 MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMA
       :::::::::::: ::::::::::::::::::::: :::::.::::::.::::::::::::
Q88E52 MAVEVVYRSSRDPERLFMDKAEADRHDKMLELAERLAEVLHKAVPSLTEQQVEEAGIYMA
               10        20        30        40        50        60

               70        80       
PFLU10 KNRDVFAKAFKSQPDALSELLNAPAE 
       :::::::.:::::::::.:::.. :  
Q88E52 KNRDVFARAFKSQPDALAELLEGTAAE
               70        80       

>>Q9HYJ2_PSEAE Q9HYJ2 Hypothetical protein.               (88 aa)
 initn: 437 init1: 437 opt: 440  Z-score: 528.4  bits: 102.2 E(): 2.4e-21
Smith-Waterman score: 440;  82.353% identity (82.353% ungapped) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
PFLU10 MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMA
       :::::::::::: ::::::::::::.:::::::: ::::::::::::.:.:::: ::.::
Q9HYJ2 MAVEVVYRSSRDQERLFMDKAEADRYDKMLELAETLAEVLQKAVPSLKEEQVEELGIFMA
               10        20        30        40        50        60

               70        80        
PFLU10 KNRDVFAKAFKSQPDALSELLNAPAE  
       ::::.::.:::.:::::.::..  :   
Q9HYJ2 KNRDAFARAFKNQPDALNELFEENAADE
               70        80        

>>Q887T9_PSESM Q887T9 Hypothetical protein.               (88 aa)
 initn: 326 init1: 326 opt: 335  Z-score: 408.0  bits: 80.0 E(): 1.2e-14
Smith-Waterman score: 335;  65.116% identity (65.882% ungapped) in 86 aa overlap (1-86:1-85)

               10        20        30        40        50        60
PFLU10 MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMA
       ::::..:::.::::  :.:.  :: ::.::::::::..:: : ::.:::...:.:.::::
Q887T9 MAVETLYRSTRDLETTFVDRKLADAHDQMLELAELLTDVLIKNVPGLSEKHAEDASIYMA
               10        20        30        40        50        60

               70        80         
PFLU10 KNRDVFAKAFKSQPDALSELLNAPAE   
       ::: ::: :::..  ::::: . :::   
Q887T9 KNRAVFAAAFKNNATALSEL-SEPAESEG
               70        80         

>>Q8ZFD7_YERPE Q8ZFD7 Hypothetical protein YPO1777 (Hypo  (106 aa)
 initn:  79 init1:  79 opt: 152  Z-score: 197.0  bits: 41.2 E(): 0.0069
Smith-Waterman score: 152;  38.961% identity (40.541% ungapped) in 77 aa overlap (1-74:1-77)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::::. .   :. :.   :  : ::: .::::.::. :.: :..:  :: :.: :  ...
Q8ZFD7 MAVEIKFVVVRQGEEKMTFTTKKEADAYDKMLDLADNLSEWLSQAPLSLEEEQREALSFF
               10        20        30        40        50        60

       60        70         80                       
PFLU10 MAKNRDVFAKAFK-SQPDALSELLNAPAE                 
       .:.:...... .. : :                             
Q8ZFD7 LAENKEALGQILRGSTPVVAVDGPQKVQSEKNTAEKKSKPEENQAA
               70        80        90       100      

>>Q66BW3_YERPS Q66BW3 Hypothetical protein.               (106 aa)
 initn:  79 init1:  79 opt: 152  Z-score: 197.0  bits: 41.2 E(): 0.0069
Smith-Waterman score: 152;  38.961% identity (40.541% ungapped) in 77 aa overlap (1-74:1-77)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::::. .   :. :.   :  : ::: .::::.::. :.: :..:  :: :.: :  ...
Q66BW3 MAVEIKFVVVRQGEEKMTFTTKKEADAYDKMLDLADNLSEWLSQAPLSLEEEQREALSFF
               10        20        30        40        50        60

       60        70         80                       
PFLU10 MAKNRDVFAKAFK-SQPDALSELLNAPAE                 
       .:.:...... .. : :                             
Q66BW3 LAENKEALGQILRGSTPVVAVDGPQKVQSEKNTAEKKSKPEENQAA
               70        80        90       100      

>>Q5QU66_IDILO Q5QU66 Uncharacterized conserved protein.  (104 aa)
 initn: 119 init1: 119 opt: 147  Z-score: 191.4  bits: 40.1 E(): 0.014
Smith-Waterman score: 147;  40.909% identity (42.188% ungapped) in 66 aa overlap (1-64:1-66)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: . :   ::  :.. : .::::: :::.:..:: :  .....    .:::.:. ...
Q5QU66 MAVVTQYVVIRDGAEKMTFTSKAEADAHDKILDMAEALNPLIKSSELFTDEQQLEDMALF
               10        20        30        40        50        60

       60        70        80                      
PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE                
       .::.:.                                      
Q5QU66 LAKERENILIALGAKKPKKPKTEKASTEKVEASKPADKESTKAA
               70        80        90       100    

>>YEBG_ECOLI P33220 Hypothetical protein yebG.            (96 aa)
 initn:  98 init1:  98 opt: 141  Z-score: 185.0  bits: 38.8 E(): 0.032
Smith-Waterman score: 141;  32.955% identity (33.721% ungapped) in 88 aa overlap (1-86:1-88)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLERL--FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::::: :   :. :.   : .: ::: .::::. :.::   : ..  .. ..: :  ...
YEBG_E MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW
               10        20        30        40        50        60

       60        70        80              
PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE        
       .:...::..  .:.      ....: .:        
YEBG_E LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA
               70        80        90      

>>Q9KPP0_VIBCH Q9KPP0 Hypothetical protein VC2326.        (102 aa)
 initn:  90 init1:  90 opt: 140  Z-score: 183.4  bits: 38.6 E(): 0.039
Smith-Waterman score: 140;  41.026% identity (43.243% ungapped) in 78 aa overlap (1-74:1-78)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: : :   :. :.   : .::::: .::::..:. : :.: :..   .: . :: ...
Q9KPP0 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFELLGKSALIEDEAKQEELAMF
               10        20        30        40        50        60

       60          70        80                  
PFLU10 MAKNR-DVF-AKAFKSQPDALSELLNAPAE            
       .:.:. ::. : . : .:                        
Q9KPP0 LAQNKEDVLCALGAKRKPAPATGKKPKAVADSDDDESVDDAA
               70        80        90       100  

>>Q8Z5X4_SALTI Q8Z5X4 Hypothetical protein STY2088 (Hypo  (96 aa)
 initn:  81 init1:  81 opt: 133  Z-score: 175.8  bits: 37.1 E():  0.1
Smith-Waterman score: 133;  37.838% identity (38.889% ungapped) in 74 aa overlap (1-72:1-74)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::::: :   :.  :.. : .: :::  ::::. :.::   :...   : . : :  ...
Q8Z5X4 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLW
               10        20        30        40        50        60

       60        70        80              
PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE        
       ::....:..  .:.                      
Q8Z5X4 MAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA
               70        80        90      

>>Q7MI98_VIBVY Q7MI98 Hypothetical protein VV2619.        (104 aa)
 initn:  56 init1:  56 opt: 130  Z-score: 171.9  bits: 36.5 E(): 0.17
Smith-Waterman score: 130;  34.940% identity (36.709% ungapped) in 83 aa overlap (1-79:1-83)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: : :   :. :.   : .::::: .::::..:. : ..: :.    .: . :. ...
Q7MI98 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFDLLGKSDLLEDEGKQEDLAMF
               10        20        30        40        50        60

       60          70        80                    
PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE              
       .:.:..  ..: . : .:   .:                     
Q7MI98 LAQNKEELLYALGAKRRPTPKKEKKLAAVADDAADEDESAEDAA
               70        80        90       100    

>>Q8DBM3_VIBVU Q8DBM3 Hypothetical protein.               (104 aa)
 initn:  56 init1:  56 opt: 130  Z-score: 171.9  bits: 36.5 E(): 0.17
Smith-Waterman score: 130;  34.940% identity (36.709% ungapped) in 83 aa overlap (1-79:1-83)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: : :   :. :.   : .::::: .::::..:. : ..: :.    .: . :. ...
Q8DBM3 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFDLLGKSDLLEDEGKQEDLAMF
               10        20        30        40        50        60

       60          70        80                    
PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE              
       .:.:..  ..: . : .:   .:                     
Q8DBM3 LAQNKEELLYALGAKRRPTPKKEKKLAAVADNAADEDESAEDAA
               70        80        90       100    

>>Q8ZNW6_SALTY Q8ZNW6 DNA damage-inducible gene in SOS r  (96 aa)
 initn:  58 init1:  58 opt: 129  Z-score: 171.2  bits: 36.3 E(): 0.19
Smith-Waterman score: 129;  36.486% identity (37.500% ungapped) in 74 aa overlap (1-72:1-74)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::::: :   :.  :.. : .: :::  ::::. :.::   :...   : . : :  ...
Q8ZNW6 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLW
               10        20        30        40        50        60

       60        70        80              
PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE        
       .:....:..  .:.                      
Q8ZNW6 LAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA
               70        80        90      

>>Q57NB8_SALET Q57NB8 DNA damage-inducible gene in SOS r  (96 aa)
 initn:  58 init1:  58 opt: 129  Z-score: 171.2  bits: 36.3 E(): 0.19
Smith-Waterman score: 129;  36.486% identity (37.500% ungapped) in 74 aa overlap (1-72:1-74)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::::: :   :.  :.. : .: :::  ::::. :.::   :...   : . : :  ...
Q57NB8 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLW
               10        20        30        40        50        60

       60        70        80              
PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE        
       .:....:..  .:.                      
Q57NB8 LAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA
               70        80        90      

>>Q87M79_VIBPA Q87M79 DNA damage-inducible gene in SOS r  (98 aa)
 initn:  56 init1:  56 opt: 128  Z-score: 169.9  bits: 36.1 E(): 0.22
Smith-Waterman score: 128;  35.897% identity (37.838% ungapped) in 78 aa overlap (1-74:1-78)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: : :   :. :.   : .::::: .::::..:. :  .: :.    .: . :. ...
Q87M79 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFTLLGKSELLEDEGKQEDLAMF
               10        20        30        40        50        60

       60          70        80              
PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE        
       .:.:..  ..: . : .:                    
Q87M79 LAQNKEELLYAIGAKRKPAPKKAKKLEAVEEEQQEDAA
               70        80        90        

>>Q8EDY6_SHEON Q8EDY6 Hypothetical protein SO2604.        (99 aa)
 initn:  45 init1:  45 opt: 124  Z-score: 165.3  bits: 35.2 E():  0.4
Smith-Waterman score: 124;  34.247% identity (35.211% ungapped) in 73 aa overlap (1-71:1-73)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: . .   :. .:.. : .: ::: .::::..:. :   .:.:  ...:. .:. ..:
Q8EDY6 MAVITQFVVVREGVEKMTFTSKKEADAYDKMLDIADNLIPFIQNAQLGIDESLTEQLAFY
               10        20        30        40        50        60

       60        70        80                 
PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE           
       .:.:.: ... .:.                         
Q8EDY6 FANNKDELTNLLKGVVQVNSTPTKQSAAKKASKKDDAVE
               70        80        90         

>>Q5E7C4_VIBF1 Q5E7C4 Hypothetical protein.               (96 aa)
 initn:  84 init1:  84 opt: 120  Z-score: 160.9  bits: 34.4 E(): 0.71
Smith-Waterman score: 120;  35.897% identity (37.838% ungapped) in 78 aa overlap (1-74:1-78)

               10          20        30        40        50        
PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY
       ::: : :   :. :.   : .:.::: .::::..:. :   : ..    .: . :: ..:
Q5E7C4 MAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDIADELFTFLGESELIEDEAKQEEMSLY
               10        20        30        40        50        60

       60          70        80            
PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE      
       .::...  ..: . : .:                  
Q5E7C4 LAKHKEDLLIALGAKRKPAPKKAKIKAVQDEESDAA
               70        80        90      

>>Q6LMY9_PHOPR Q6LMY9 Putative DNA damage-inducible gene  (102 aa)
 initn:  61 init1:  61 opt: 112  Z-score: 151.3  bits: 32.7 E():  2.4
Smith-Waterman score: 112;  32.911% identity (35.135% ungapped) in 79 aa overlap (1-74:3-81)

                 10          20        30        40        50      
PFLU10   MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAG
         ::: : :   :. :.   : .:.::: .::::..:. .  .:  .    .: . :: .
Q6LMY9 MTMAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLAASELFEDEAKQEELS
               10        20        30        40        50        60

         60           70        80               
PFLU10 IYMAKNRD---VFAKAFKSQPDALSELLNAPAE         
       ...:..:.   .   : :..:                     
Q6LMY9 LFLAQKREEVLIALGAKKAKPAPKKKTESAKIVEEQSQDEAA
               70        80        90       100  



86 residues in 1 query   sequences
606471847 residues in 1896046 library sequences
 Tcomplib (4 proc)[33t08]
 start: Wed May 25 08:27:40 2005 done: Wed May 25 08:28:27 2005
 Scan time: 81.883 Display time:  0.017

Function used was FASTA [version 3.3t08 Jan. 17, 2001]