FASTA searches a protein or DNA sequence data bank
 version 3.3t08 Jan. 17, 2001
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

./fasta/PFLU.tab.seq.05567: 136 aa
 >PFLU5100 PFLU5100  5574460:5574867 reverse MW:15517
 vs  UNIPROT library
searching /data/blastdb/uniprot-1 0 library

550308487 residues in 1727324 sequences
 statistics extrapolated from 60000 to 1727121 sequences
  Expectation_n fit: rho(ln(x))= 5.6912+/-0.000195; mu= 0.5395+/- 0.011
 mean_var=79.4716+/-16.924, 0's: 180 Z-trim: 0  B-trim: 843 in 1/64
 Lambda= 0.1439

FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)xS] ktup: 2
 join: 36, opt: 24, gap-pen: -12/ -2, width:  16
 Scan time: 115.883
The best scores are:                                       opt z-sc E(1727121)
Q887T1 Q887T1 Ribosomal subunit interface protein  ( 142)  660  758.1 3.5e-34
Q6F6Y7 Q6F6Y7 Hypothetical protein.                ( 117)  298  353.3 1.2e-11
Q8PDD9 Q8PDD9 Hypothetical protein XCC0401.        ( 120)  270  321.7 7.1e-10
Q8PQA9 Q8PQA9 Hypothetical protein XAC0419.        ( 103)  219  265.5 9.7e-07

>>Q887T1 Q887T1 Ribosomal subunit interface protein, put  (142 aa)
 initn: 660 init1: 624 opt: 660  Z-score: 758.1  bits: 146.1 E(): 3.5e-34
Smith-Waterman score: 660;  73.881% identity (75.573% ungapped) in 134 aa overlap (1-131:1-134)

               10        20        30        40        50        60
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL
       ::::::::::::::::::::::::.:::::.:.::::::::..::::::::::::..:..
Q887T1 MQIQVNSDNHIESSIRLEEWVRTTVESTLEHYDEDLTRVEVHIRDENGDKPGPHDIKCQM
               10        20        30        40        50        60

               70        80        90       100         110        
PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAG--KSLSDTKVN
       :::::::::.:: :::::..::.::::.:::::::::::.:.::  ::      .:  ..
Q887T1 EARPKGHQPISVSHKADTVDQAVDGAAVKLDHALEHLFGKLRGKRSAAPVIAEQDDDPIS
               70        80        90       100       110       120

      120        130         
PFLU51 EDEL-EQEFLEKERAVFNS   
        : : :.::::::.        
Q887T1 PDALLEEEFLEKEQEKEAARLG
              130       140  

>>Q6F6Y7 Q6F6Y7 Hypothetical protein.                     (117 aa)
 initn: 257 init1: 257 opt: 298  Z-score: 353.3  bits: 70.9 E(): 1.2e-11
Smith-Waterman score: 298;  43.137% identity (43.137% ungapped) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL
       :.:.. .:.::.:: :: ..::. .   ..:. : .:.  :.: :::::: :  :. : .
Q6F6Y7 MNIEIRTDKHIQSSERLIDYVRAELSREFQRHSERITHFSVHLSDENGDKGGDDDIRCMI
               10        20        30        40        50        60

               70        80        90       100       110       120
PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLSDTKVNED
       :.::.: .:..: ::: ... .: ::  :: . ::: : .:.                  
Q6F6Y7 EVRPSGLKPIAVSHKAKNVDLSIHGAIDKLKRNLEHTFEKLEPTRGSRVEFADADEE   
               70        80        90       100       110          

              130      
PFLU51 ELEQEFLEKERAVFNS

>>Q8PDD9 Q8PDD9 Hypothetical protein XCC0401.             (120 aa)
 initn: 241 init1: 241 opt: 270  Z-score: 321.7  bits: 65.1 E(): 7.1e-10
Smith-Waterman score: 270;  40.187% identity (40.187% ungapped) in 107 aa overlap (1-107:8-114)

                      10        20        30        40        50   
PFLU51        MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGP
              ::::...:::.  .  . . :. :  . : .. .:.:::::.::::::.. : 
Q8PDD9 MTAKETPMQIQIQTDNHVPHDPSVVQHVEKTCSAQLAHFAHDITRVEVHLRDENGQRGGA
               10        20        30        40        50        60

            60        70        80        90       100       110   
PFLU51 HDLSCRLEARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLS
        : .: .::.  :  :... ..:.:  .:. ::: ::  :.:   :. :.:  :      
Q8PDD9 ADRTCSIEAHVAGLPPIAASNSAETTASAVTGAARKLRSAIESARGKQQAKATAPAPDPL
               70        80        90       100       110       120

           120       130      
PFLU51 DTKVNEDELEQEFLEKERAVFNS

>>Q8PQA9 Q8PQA9 Hypothetical protein XAC0419.             (103 aa)
 initn: 183 init1: 183 opt: 219  Z-score: 265.5  bits: 54.5 E(): 9.7e-07
Smith-Waterman score: 219;  40.230% identity (40.230% ungapped) in 87 aa overlap (21-107:11-97)

               10        20        30        40        50        60
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL
                           :. :  . : ..  :.:::.:.::::::.. :  : .: .
Q8PQA9           MPHDPSVVAHVEKTCTAQLAHFASDITRVDVHLRDENGQRGGAADRTCSI
                         10        20        30        40        50

               70        80        90       100       110       120
PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLSDTKVNED
       ::.  :  :... ..:.:  .:. ::: ::  :.::  :. ..:  :             
Q8PQA9 EAHVAGLPPIAATNSAETTASAVTGAARKLRTAIEHARGKQHSKATAPPPDML       
               60        70        80        90       100          

              130      
PFLU51 ELEQEFLEKERAVFNS



136 residues in 1 query   sequences
550308487 residues in 1727324 library sequences
 Tcomplib (4 proc)[33t08]
 start: Mon Jan 24 21:09:03 2005 done: Mon Jan 24 21:09:54 2005
 Scan time: 115.883 Display time:  0.000

Function used was FASTA [version 3.3t08 Jan. 17, 2001]