FASTA searches a protein or DNA sequence data bank version 3.3t08 Jan. 17, 2001 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 /nfs/disk222/yeastpub3/Pseudomonas/fluorescens/who: 86 aa >PFLU1031 PFLU1031 1141925:1142185 reverse MW:9696 vs UNIPROT library searching /data/blastdb/uniprot-1 0 library 606471847 residues in 1896046 sequences statistics extrapolated from 60000 to 1895822 sequences Expectation_n fit: rho(ln(x))= 5.5208+/-0.000189; mu= -1.8978+/- 0.011 mean_var=76.0350+/-16.384, 0's: 200 Z-trim: 1 B-trim: 0 in 0/65 Lambda= 0.1471 FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)xS] ktup: 2 join: 36, opt: 24, gap-pen: -12/ -2, width: 16 Scan time: 81.883 The best scores are: opt z-sc E(1895822) Q88E52_PSEPK Q88E52 Hypothetical protein. ( 87) 471 564.1 2.5e-23 LINK:Q88E52_PSEPK Q9HYJ2_PSEAE Q9HYJ2 Hypothetical protein. ( 88) 440 528.4 2.4e-21 LINK:Q9HYJ2_PSEAE Q887T9_PSESM Q887T9 Hypothetical protein. ( 88) 335 408.0 1.2e-14 LINK:Q887T9_PSESM Q8ZFD7_YERPE Q8ZFD7 Hypothetical protein YPO1777 ( 106) 152 197.0 0.0069 LINK:Q8ZFD7_YERPE Q66BW3_YERPS Q66BW3 Hypothetical protein. ( 106) 152 197.0 0.0069 LINK:Q66BW3_YERPS Q5QU66_IDILO Q5QU66 Uncharacterized conserved pro ( 104) 147 191.4 0.014 LINK:Q5QU66_IDILO YEBG_ECOLI P33220 Hypothetical protein yebG. ( 96) 141 185.0 0.032 LINK:YEBG_ECOLI Q9KPP0_VIBCH Q9KPP0 Hypothetical protein VC2326. ( 102) 140 183.4 0.039 LINK:Q9KPP0_VIBCH Q8Z5X4_SALTI Q8Z5X4 Hypothetical protein STY2088 ( 96) 133 175.8 0.1 LINK:Q8Z5X4_SALTI Q7MI98_VIBVY Q7MI98 Hypothetical protein VV2619. ( 104) 130 171.9 0.17 LINK:Q7MI98_VIBVY Q8DBM3_VIBVU Q8DBM3 Hypothetical protein. ( 104) 130 171.9 0.17 LINK:Q8DBM3_VIBVU Q8ZNW6_SALTY Q8ZNW6 DNA damage-inducible gene in ( 96) 129 171.2 0.19 LINK:Q8ZNW6_SALTY Q57NB8_SALET Q57NB8 DNA damage-inducible gene in ( 96) 129 171.2 0.19 LINK:Q57NB8_SALET Q87M79_VIBPA Q87M79 DNA damage-inducible gene in ( 98) 128 169.9 0.22 LINK:Q87M79_VIBPA Q8EDY6_SHEON Q8EDY6 Hypothetical protein SO2604. ( 99) 124 165.3 0.4 LINK:Q8EDY6_SHEON Q5E7C4_VIBF1 Q5E7C4 Hypothetical protein. ( 96) 120 160.9 0.71 LINK:Q5E7C4_VIBF1 Q6LMY9_PHOPR Q6LMY9 Putative DNA damage-inducible ( 102) 112 151.3 2.4 LINK:Q6LMY9_PHOPR >>Q88E52_PSEPK Q88E52 Hypothetical protein. (87 aa) initn: 467 init1: 467 opt: 471 Z-score: 564.1 bits: 108.8 E(): 2.5e-23 Smith-Waterman score: 471; 89.412% identity (89.412% ungapped) in 85 aa overlap (1-85:1-85) 10 20 30 40 50 60 PFLU10 MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMA :::::::::::: ::::::::::::::::::::: :::::.::::::.:::::::::::: Q88E52 MAVEVVYRSSRDPERLFMDKAEADRHDKMLELAERLAEVLHKAVPSLTEQQVEEAGIYMA 10 20 30 40 50 60 70 80 PFLU10 KNRDVFAKAFKSQPDALSELLNAPAE :::::::.:::::::::.:::.. : Q88E52 KNRDVFARAFKSQPDALAELLEGTAAE 70 80 >>Q9HYJ2_PSEAE Q9HYJ2 Hypothetical protein. (88 aa) initn: 437 init1: 437 opt: 440 Z-score: 528.4 bits: 102.2 E(): 2.4e-21 Smith-Waterman score: 440; 82.353% identity (82.353% ungapped) in 85 aa overlap (1-85:1-85) 10 20 30 40 50 60 PFLU10 MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMA :::::::::::: ::::::::::::.:::::::: ::::::::::::.:.:::: ::.:: Q9HYJ2 MAVEVVYRSSRDQERLFMDKAEADRYDKMLELAETLAEVLQKAVPSLKEEQVEELGIFMA 10 20 30 40 50 60 70 80 PFLU10 KNRDVFAKAFKSQPDALSELLNAPAE ::::.::.:::.:::::.::.. : Q9HYJ2 KNRDAFARAFKNQPDALNELFEENAADE 70 80 >>Q887T9_PSESM Q887T9 Hypothetical protein. (88 aa) initn: 326 init1: 326 opt: 335 Z-score: 408.0 bits: 80.0 E(): 1.2e-14 Smith-Waterman score: 335; 65.116% identity (65.882% ungapped) in 86 aa overlap (1-86:1-85) 10 20 30 40 50 60 PFLU10 MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMA ::::..:::.:::: :.:. :: ::.::::::::..:: : ::.:::...:.:.:::: Q887T9 MAVETLYRSTRDLETTFVDRKLADAHDQMLELAELLTDVLIKNVPGLSEKHAEDASIYMA 10 20 30 40 50 60 70 80 PFLU10 KNRDVFAKAFKSQPDALSELLNAPAE ::: ::: :::.. ::::: . ::: Q887T9 KNRAVFAAAFKNNATALSEL-SEPAESEG 70 80 >>Q8ZFD7_YERPE Q8ZFD7 Hypothetical protein YPO1777 (Hypo (106 aa) initn: 79 init1: 79 opt: 152 Z-score: 197.0 bits: 41.2 E(): 0.0069 Smith-Waterman score: 152; 38.961% identity (40.541% ungapped) in 77 aa overlap (1-74:1-77) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::::. . :. :. : : ::: .::::.::. :.: :..: :: :.: : ... Q8ZFD7 MAVEIKFVVVRQGEEKMTFTTKKEADAYDKMLDLADNLSEWLSQAPLSLEEEQREALSFF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFK-SQPDALSELLNAPAE .:.:...... .. : : Q8ZFD7 LAENKEALGQILRGSTPVVAVDGPQKVQSEKNTAEKKSKPEENQAA 70 80 90 100 >>Q66BW3_YERPS Q66BW3 Hypothetical protein. (106 aa) initn: 79 init1: 79 opt: 152 Z-score: 197.0 bits: 41.2 E(): 0.0069 Smith-Waterman score: 152; 38.961% identity (40.541% ungapped) in 77 aa overlap (1-74:1-77) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::::. . :. :. : : ::: .::::.::. :.: :..: :: :.: : ... Q66BW3 MAVEIKFVVVRQGEEKMTFTTKKEADAYDKMLDLADNLSEWLSQAPLSLEEEQREALSFF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFK-SQPDALSELLNAPAE .:.:...... .. : : Q66BW3 LAENKEALGQILRGSTPVVAVDGPQKVQSEKNTAEKKSKPEENQAA 70 80 90 100 >>Q5QU66_IDILO Q5QU66 Uncharacterized conserved protein. (104 aa) initn: 119 init1: 119 opt: 147 Z-score: 191.4 bits: 40.1 E(): 0.014 Smith-Waterman score: 147; 40.909% identity (42.188% ungapped) in 66 aa overlap (1-64:1-66) 10 20 30 40 50 PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: . : :: :.. : .::::: :::.:..:: : ..... .:::.:. ... Q5QU66 MAVVTQYVVIRDGAEKMTFTSKAEADAHDKILDMAEALNPLIKSSELFTDEQQLEDMALF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE .::.:. Q5QU66 LAKERENILIALGAKKPKKPKTEKASTEKVEASKPADKESTKAA 70 80 90 100 >>YEBG_ECOLI P33220 Hypothetical protein yebG. (96 aa) initn: 98 init1: 98 opt: 141 Z-score: 185.0 bits: 38.8 E(): 0.032 Smith-Waterman score: 141; 32.955% identity (33.721% ungapped) in 88 aa overlap (1-86:1-88) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLERL--FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::::: : :. :. : .: ::: .::::. :.:: : .. .. ..: : ... YEBG_E MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE .:...::.. .:. ....: .: YEBG_E LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA 70 80 90 >>Q9KPP0_VIBCH Q9KPP0 Hypothetical protein VC2326. (102 aa) initn: 90 init1: 90 opt: 140 Z-score: 183.4 bits: 38.6 E(): 0.039 Smith-Waterman score: 140; 41.026% identity (43.243% ungapped) in 78 aa overlap (1-74:1-78) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: : : :. :. : .::::: .::::..:. : :.: :.. .: . :: ... Q9KPP0 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFELLGKSALIEDEAKQEELAMF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNR-DVF-AKAFKSQPDALSELLNAPAE .:.:. ::. : . : .: Q9KPP0 LAQNKEDVLCALGAKRKPAPATGKKPKAVADSDDDESVDDAA 70 80 90 100 >>Q8Z5X4_SALTI Q8Z5X4 Hypothetical protein STY2088 (Hypo (96 aa) initn: 81 init1: 81 opt: 133 Z-score: 175.8 bits: 37.1 E(): 0.1 Smith-Waterman score: 133; 37.838% identity (38.889% ungapped) in 74 aa overlap (1-72:1-74) 10 20 30 40 50 PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::::: : :. :.. : .: ::: ::::. :.:: :... : . : : ... Q8Z5X4 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLW 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE ::....:.. .:. Q8Z5X4 MAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA 70 80 90 >>Q7MI98_VIBVY Q7MI98 Hypothetical protein VV2619. (104 aa) initn: 56 init1: 56 opt: 130 Z-score: 171.9 bits: 36.5 E(): 0.17 Smith-Waterman score: 130; 34.940% identity (36.709% ungapped) in 83 aa overlap (1-79:1-83) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: : : :. :. : .::::: .::::..:. : ..: :. .: . :. ... Q7MI98 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFDLLGKSDLLEDEGKQEDLAMF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE .:.:.. ..: . : .: .: Q7MI98 LAQNKEELLYALGAKRRPTPKKEKKLAAVADDAADEDESAEDAA 70 80 90 100 >>Q8DBM3_VIBVU Q8DBM3 Hypothetical protein. (104 aa) initn: 56 init1: 56 opt: 130 Z-score: 171.9 bits: 36.5 E(): 0.17 Smith-Waterman score: 130; 34.940% identity (36.709% ungapped) in 83 aa overlap (1-79:1-83) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: : : :. :. : .::::: .::::..:. : ..: :. .: . :. ... Q8DBM3 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFDLLGKSDLLEDEGKQEDLAMF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE .:.:.. ..: . : .: .: Q8DBM3 LAQNKEELLYALGAKRRPTPKKEKKLAAVADNAADEDESAEDAA 70 80 90 100 >>Q8ZNW6_SALTY Q8ZNW6 DNA damage-inducible gene in SOS r (96 aa) initn: 58 init1: 58 opt: 129 Z-score: 171.2 bits: 36.3 E(): 0.19 Smith-Waterman score: 129; 36.486% identity (37.500% ungapped) in 74 aa overlap (1-72:1-74) 10 20 30 40 50 PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::::: : :. :.. : .: ::: ::::. :.:: :... : . : : ... Q8ZNW6 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLW 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE .:....:.. .:. Q8ZNW6 LAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA 70 80 90 >>Q57NB8_SALET Q57NB8 DNA damage-inducible gene in SOS r (96 aa) initn: 58 init1: 58 opt: 129 Z-score: 171.2 bits: 36.3 E(): 0.19 Smith-Waterman score: 129; 36.486% identity (37.500% ungapped) in 74 aa overlap (1-72:1-74) 10 20 30 40 50 PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::::: : :. :.. : .: ::: ::::. :.:: :... : . : : ... Q57NB8 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLW 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE .:....:.. .:. Q57NB8 LAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA 70 80 90 >>Q87M79_VIBPA Q87M79 DNA damage-inducible gene in SOS r (98 aa) initn: 56 init1: 56 opt: 128 Z-score: 169.9 bits: 36.1 E(): 0.22 Smith-Waterman score: 128; 35.897% identity (37.838% ungapped) in 78 aa overlap (1-74:1-78) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: : : :. :. : .::::: .::::..:. : .: :. .: . :. ... Q87M79 MAVIVKYVVERNGEEKMTFTSKAEADAYDKMLDMADELFTLLGKSELLEDEGKQEDLAMF 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE .:.:.. ..: . : .: Q87M79 LAQNKEELLYAIGAKRKPAPKKAKKLEAVEEEQQEDAA 70 80 90 >>Q8EDY6_SHEON Q8EDY6 Hypothetical protein SO2604. (99 aa) initn: 45 init1: 45 opt: 124 Z-score: 165.3 bits: 35.2 E(): 0.4 Smith-Waterman score: 124; 34.247% identity (35.211% ungapped) in 73 aa overlap (1-71:1-73) 10 20 30 40 50 PFLU10 MAVEVVYRSSRD-LERL-FMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: . . :. .:.. : .: ::: .::::..:. : .:.: ...:. .:. ..: Q8EDY6 MAVITQFVVVREGVEKMTFTSKKEADAYDKMLDIADNLIPFIQNAQLGIDESLTEQLAFY 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRDVFAKAFKSQPDALSELLNAPAE .:.:.: ... .:. Q8EDY6 FANNKDELTNLLKGVVQVNSTPTKQSAAKKASKKDDAVE 70 80 90 >>Q5E7C4_VIBF1 Q5E7C4 Hypothetical protein. (96 aa) initn: 84 init1: 84 opt: 120 Z-score: 160.9 bits: 34.4 E(): 0.71 Smith-Waterman score: 120; 35.897% identity (37.838% ungapped) in 78 aa overlap (1-74:1-78) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIY ::: : : :. :. : .:.::: .::::..:. : : .. .: . :: ..: Q5E7C4 MAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDIADELFTFLGESELIEDEAKQEEMSLY 10 20 30 40 50 60 60 70 80 PFLU10 MAKNRD--VFAKAFKSQPDALSELLNAPAE .::... ..: . : .: Q5E7C4 LAKHKEDLLIALGAKRKPAPKKAKIKAVQDEESDAA 70 80 90 >>Q6LMY9_PHOPR Q6LMY9 Putative DNA damage-inducible gene (102 aa) initn: 61 init1: 61 opt: 112 Z-score: 151.3 bits: 32.7 E(): 2.4 Smith-Waterman score: 112; 32.911% identity (35.135% ungapped) in 79 aa overlap (1-74:3-81) 10 20 30 40 50 PFLU10 MAVEVVYRSSRDLER--LFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAG ::: : : :. :. : .:.::: .::::..:. . .: . .: . :: . Q6LMY9 MTMAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLAASELFEDEAKQEELS 10 20 30 40 50 60 60 70 80 PFLU10 IYMAKNRD---VFAKAFKSQPDALSELLNAPAE ...:..:. . : :..: Q6LMY9 LFLAQKREEVLIALGAKKAKPAPKKKTESAKIVEEQSQDEAA 70 80 90 100 86 residues in 1 query sequences 606471847 residues in 1896046 library sequences Tcomplib (4 proc)[33t08] start: Wed May 25 08:27:40 2005 done: Wed May 25 08:28:27 2005 Scan time: 81.883 Display time: 0.017 Function used was FASTA [version 3.3t08 Jan. 17, 2001]