FASTA searches a protein or DNA sequence data bank version 3.3t08 Jan. 17, 2001 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ./fasta/PFLU.tab.seq.05567: 136 aa >PFLU5100 PFLU5100 5574460:5574867 reverse MW:15517 vs UNIPROT library searching /data/blastdb/uniprot-1 0 library 550308487 residues in 1727324 sequences statistics extrapolated from 60000 to 1727121 sequences Expectation_n fit: rho(ln(x))= 5.6912+/-0.000195; mu= 0.5395+/- 0.011 mean_var=79.4716+/-16.924, 0's: 180 Z-trim: 0 B-trim: 843 in 1/64 Lambda= 0.1439 FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)xS] ktup: 2 join: 36, opt: 24, gap-pen: -12/ -2, width: 16 Scan time: 115.883 The best scores are: opt z-sc E(1727121) Q887T1 Q887T1 Ribosomal subunit interface protein ( 142) 660 758.1 3.5e-34 Q6F6Y7 Q6F6Y7 Hypothetical protein. ( 117) 298 353.3 1.2e-11 Q8PDD9 Q8PDD9 Hypothetical protein XCC0401. ( 120) 270 321.7 7.1e-10 Q8PQA9 Q8PQA9 Hypothetical protein XAC0419. ( 103) 219 265.5 9.7e-07 >>Q887T1 Q887T1 Ribosomal subunit interface protein, put (142 aa) initn: 660 init1: 624 opt: 660 Z-score: 758.1 bits: 146.1 E(): 3.5e-34 Smith-Waterman score: 660; 73.881% identity (75.573% ungapped) in 134 aa overlap (1-131:1-134) 10 20 30 40 50 60 PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL ::::::::::::::::::::::::.:::::.:.::::::::..::::::::::::..:.. Q887T1 MQIQVNSDNHIESSIRLEEWVRTTVESTLEHYDEDLTRVEVHIRDENGDKPGPHDIKCQM 10 20 30 40 50 60 70 80 90 100 110 PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAG--KSLSDTKVN :::::::::.:: :::::..::.::::.:::::::::::.:.:: :: .: .. Q887T1 EARPKGHQPISVSHKADTVDQAVDGAAVKLDHALEHLFGKLRGKRSAAPVIAEQDDDPIS 70 80 90 100 110 120 120 130 PFLU51 EDEL-EQEFLEKERAVFNS : : :.::::::. Q887T1 PDALLEEEFLEKEQEKEAARLG 130 140 >>Q6F6Y7 Q6F6Y7 Hypothetical protein. (117 aa) initn: 257 init1: 257 opt: 298 Z-score: 353.3 bits: 70.9 E(): 1.2e-11 Smith-Waterman score: 298; 43.137% identity (43.137% ungapped) in 102 aa overlap (1-102:1-102) 10 20 30 40 50 60 PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL :.:.. .:.::.:: :: ..::. . ..:. : .:. :.: :::::: : :. : . Q6F6Y7 MNIEIRTDKHIQSSERLIDYVRAELSREFQRHSERITHFSVHLSDENGDKGGDDDIRCMI 10 20 30 40 50 60 70 80 90 100 110 120 PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLSDTKVNED :.::.: .:..: ::: ... .: :: :: . ::: : .:. Q6F6Y7 EVRPSGLKPIAVSHKAKNVDLSIHGAIDKLKRNLEHTFEKLEPTRGSRVEFADADEE 70 80 90 100 110 130 PFLU51 ELEQEFLEKERAVFNS >>Q8PDD9 Q8PDD9 Hypothetical protein XCC0401. (120 aa) initn: 241 init1: 241 opt: 270 Z-score: 321.7 bits: 65.1 E(): 7.1e-10 Smith-Waterman score: 270; 40.187% identity (40.187% ungapped) in 107 aa overlap (1-107:8-114) 10 20 30 40 50 PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGP ::::...:::. . . . :. : . : .. .:.:::::.::::::.. : Q8PDD9 MTAKETPMQIQIQTDNHVPHDPSVVQHVEKTCSAQLAHFAHDITRVEVHLRDENGQRGGA 10 20 30 40 50 60 60 70 80 90 100 110 PFLU51 HDLSCRLEARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLS : .: .::. : :... ..:.: .:. ::: :: :.: :. :.: : Q8PDD9 ADRTCSIEAHVAGLPPIAASNSAETTASAVTGAARKLRSAIESARGKQQAKATAPAPDPL 70 80 90 100 110 120 120 130 PFLU51 DTKVNEDELEQEFLEKERAVFNS >>Q8PQA9 Q8PQA9 Hypothetical protein XAC0419. (103 aa) initn: 183 init1: 183 opt: 219 Z-score: 265.5 bits: 54.5 E(): 9.7e-07 Smith-Waterman score: 219; 40.230% identity (40.230% ungapped) in 87 aa overlap (21-107:11-97) 10 20 30 40 50 60 PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL :. : . : .. :.:::.:.::::::.. : : .: . Q8PQA9 MPHDPSVVAHVEKTCTAQLAHFASDITRVDVHLRDENGQRGGAADRTCSI 10 20 30 40 50 70 80 90 100 110 120 PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLSDTKVNED ::. : :... ..:.: .:. ::: :: :.:: :. ..: : Q8PQA9 EAHVAGLPPIAATNSAETTASAVTGAARKLRTAIEHARGKQHSKATAPPPDML 60 70 80 90 100 130 PFLU51 ELEQEFLEKERAVFNS 136 residues in 1 query sequences 550308487 residues in 1727324 library sequences Tcomplib (4 proc)[33t08] start: Mon Jan 24 21:09:03 2005 done: Mon Jan 24 21:09:54 2005 Scan time: 115.883 Display time: 0.000 Function used was FASTA [version 3.3t08 Jan. 17, 2001]