FASTA searches a protein or DNA sequence data bank
version 3.3t08 Jan. 17, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
./fasta/PFLU.tab.seq.05567: 136 aa
>PFLU5100 PFLU5100 5574460:5574867 reverse MW:15517
vs UNIPROT library
searching /data/blastdb/uniprot-1 0 library
550308487 residues in 1727324 sequences
statistics extrapolated from 60000 to 1727121 sequences
Expectation_n fit: rho(ln(x))= 5.6912+/-0.000195; mu= 0.5395+/- 0.011
mean_var=79.4716+/-16.924, 0's: 180 Z-trim: 0 B-trim: 843 in 1/64
Lambda= 0.1439
FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)xS] ktup: 2
join: 36, opt: 24, gap-pen: -12/ -2, width: 16
Scan time: 115.883
The best scores are: opt z-sc E(1727121)
Q887T1 Q887T1 Ribosomal subunit interface protein ( 142) 660 758.1 3.5e-34
Q6F6Y7 Q6F6Y7 Hypothetical protein. ( 117) 298 353.3 1.2e-11
Q8PDD9 Q8PDD9 Hypothetical protein XCC0401. ( 120) 270 321.7 7.1e-10
Q8PQA9 Q8PQA9 Hypothetical protein XAC0419. ( 103) 219 265.5 9.7e-07
>>Q887T1 Q887T1 Ribosomal subunit interface protein, put (142 aa)
initn: 660 init1: 624 opt: 660 Z-score: 758.1 bits: 146.1 E(): 3.5e-34
Smith-Waterman score: 660; 73.881% identity (75.573% ungapped) in 134 aa overlap (1-131:1-134)
10 20 30 40 50 60
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL
::::::::::::::::::::::::.:::::.:.::::::::..::::::::::::..:..
Q887T1 MQIQVNSDNHIESSIRLEEWVRTTVESTLEHYDEDLTRVEVHIRDENGDKPGPHDIKCQM
10 20 30 40 50 60
70 80 90 100 110
PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAG--KSLSDTKVN
:::::::::.:: :::::..::.::::.:::::::::::.:.:: :: .: ..
Q887T1 EARPKGHQPISVSHKADTVDQAVDGAAVKLDHALEHLFGKLRGKRSAAPVIAEQDDDPIS
70 80 90 100 110 120
120 130
PFLU51 EDEL-EQEFLEKERAVFNS
: : :.::::::.
Q887T1 PDALLEEEFLEKEQEKEAARLG
130 140
>>Q6F6Y7 Q6F6Y7 Hypothetical protein. (117 aa)
initn: 257 init1: 257 opt: 298 Z-score: 353.3 bits: 70.9 E(): 1.2e-11
Smith-Waterman score: 298; 43.137% identity (43.137% ungapped) in 102 aa overlap (1-102:1-102)
10 20 30 40 50 60
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL
:.:.. .:.::.:: :: ..::. . ..:. : .:. :.: :::::: : :. : .
Q6F6Y7 MNIEIRTDKHIQSSERLIDYVRAELSREFQRHSERITHFSVHLSDENGDKGGDDDIRCMI
10 20 30 40 50 60
70 80 90 100 110 120
PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLSDTKVNED
:.::.: .:..: ::: ... .: :: :: . ::: : .:.
Q6F6Y7 EVRPSGLKPIAVSHKAKNVDLSIHGAIDKLKRNLEHTFEKLEPTRGSRVEFADADEE
70 80 90 100 110
130
PFLU51 ELEQEFLEKERAVFNS
>>Q8PDD9 Q8PDD9 Hypothetical protein XCC0401. (120 aa)
initn: 241 init1: 241 opt: 270 Z-score: 321.7 bits: 65.1 E(): 7.1e-10
Smith-Waterman score: 270; 40.187% identity (40.187% ungapped) in 107 aa overlap (1-107:8-114)
10 20 30 40 50
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGP
::::...:::. . . . :. : . : .. .:.:::::.::::::.. :
Q8PDD9 MTAKETPMQIQIQTDNHVPHDPSVVQHVEKTCSAQLAHFAHDITRVEVHLRDENGQRGGA
10 20 30 40 50 60
60 70 80 90 100 110
PFLU51 HDLSCRLEARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLS
: .: .::. : :... ..:.: .:. ::: :: :.: :. :.: :
Q8PDD9 ADRTCSIEAHVAGLPPIAASNSAETTASAVTGAARKLRSAIESARGKQQAKATAPAPDPL
70 80 90 100 110 120
120 130
PFLU51 DTKVNEDELEQEFLEKERAVFNS
>>Q8PQA9 Q8PQA9 Hypothetical protein XAC0419. (103 aa)
initn: 183 init1: 183 opt: 219 Z-score: 265.5 bits: 54.5 E(): 9.7e-07
Smith-Waterman score: 219; 40.230% identity (40.230% ungapped) in 87 aa overlap (21-107:11-97)
10 20 30 40 50 60
PFLU51 MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLRDENGDKPGPHDLSCRL
:. : . : .. :.:::.:.::::::.. : : .: .
Q8PQA9 MPHDPSVVAHVEKTCTAQLAHFASDITRVDVHLRDENGQRGGAADRTCSI
10 20 30 40 50
70 80 90 100 110 120
PFLU51 EARPKGHQPLSVLHKADTLEQAIDGAATKLDHALEHLFGRLQGKPRAAGKSLSDTKVNED
::. : :... ..:.: .:. ::: :: :.:: :. ..: :
Q8PQA9 EAHVAGLPPIAATNSAETTASAVTGAARKLRTAIEHARGKQHSKATAPPPDML
60 70 80 90 100
130
PFLU51 ELEQEFLEKERAVFNS
136 residues in 1 query sequences
550308487 residues in 1727324 library sequences
Tcomplib (4 proc)[33t08]
start: Mon Jan 24 21:09:03 2005 done: Mon Jan 24 21:09:54 2005
Scan time: 115.883 Display time: 0.000
Function used was FASTA [version 3.3t08 Jan. 17, 2001]