Validation report with specification /nfs/users/nfs_s/ss34/new_gff_format.lua

• Features
  • pseudogene
    • …only contains allowed attributes successes 94 failures 0 runtime errors 0
    • …contains a pseudogenic_transcript successes 94 failures 0 runtime errors 0
    • …has only allowed child types successes 94 failures 0 runtime errors 0
    • …appears as a root node successes 94 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 94 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 8308 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 8308 failures 0 runtime errors 0
    • …only contains allowed attributes successes 8308 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 83 failures 0 runtime errors 0
    • …should not have children successes 83 failures 0 runtime errors 0
    • …appears as part of a gene successes 83 failures 0 runtime errors 0
  • repeat_unit
    • …appears as a root node successes 3 failures 0 runtime errors 0
    • …should not have children successes 3 failures 0 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 8306 failures 0 runtime errors 0
    • …only contains allowed attributes successes 8306 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 8306 failures 0 runtime errors 0
    • …has at least one CDS child successes 8306 failures 0 runtime errors 0
    • …has only allowed child types successes 8306 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 8306 failures 0 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 8305 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 8306 failures 0 runtime errors 0
    • …appears as part of a gene successes 8306 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 6 failures 0 runtime errors 0
    • …should not have children successes 6 failures 0 runtime errors 0
    • …appears as part of a gene successes 6 failures 0 runtime errors 0
  • ncRNA
    • …only contains allowed attributes successes 84 failures 0 runtime errors 0
    • …should not have children successes 84 failures 0 runtime errors 0
    • …appears as part of a gene successes 84 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 741 failures 0 runtime errors 0
    • …should not have children successes 741 failures 0 runtime errors 0
    • …appears as part of a gene successes 741 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 63 failures 0 runtime errors 0
    • …should not have children successes 63 failures 0 runtime errors 0
    • …appears as part of a gene successes 63 failures 0 runtime errors 0
  • pseudogenic_transcript
    • …only contains allowed attributes successes 94 failures 0 runtime errors 0
    • …appears as part of a pseudogene successes 94 failures 0 runtime errors 0
    • …has only allowed child types successes 94 failures 0 runtime errors 0
    • …contains at least one pseudogenic_exon successes 94 failures 0 runtime errors 0
  • five_prime_UTR
    • …only contains allowed attributes successes 1 failures 0 runtime errors 0
    • …should not have children successes 1 failures 0 runtime errors 0
    • …appears as part of a gene successes 1 failures 0 runtime errors 0
  • gene
    • …only contains allowed attributes successes 9283 failures 0 runtime errors 0
    • …has consistent strands across all children successes 9283 failures 0 runtime errors 0
    • …has only allowed child types successes 9283 failures 0 runtime errors 0
    • …appears as a root node successes 9283 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 9283 failures 0 runtime errors 0
  • pseudogenic_exon
    • …appears as part of a pseudogenic_transcript successes 178 failures 0 runtime errors 0
    • …should not have children successes 178 failures 0 runtime errors 0
    • …only contains allowed attributes successes 178 failures 0 runtime errors 0
  • polypeptide
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 8400 failures 0 runtime errors 0
    • …only contains allowed attributes successes 8400 failures 0 runtime errors 0
    • …has a required product attribute successes 8399 failures 1 runtime errors 0
      • ID: LmjF.04.1160:pep, file Lmajor.noseq.gff3, line 2541
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:307: should not be nil but is nil
    • …overlaps the transcript it derives_from successes 8400 failures 0 runtime errors 0
    • …must be derived_from a unique mRNA successes 8400 failures 0 runtime errors 0
    • …appears as a root node successes 8400 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings