Validation report with specification /nfs/users/nfs_s/ss34/new_gff_format.lua

• Features
  • contig
    • …appears as a root node successes 1322 failures 0 runtime errors 0
    • …should not have children successes 1322 failures 0 runtime errors 0
    • …only contains allowed attributes successes 1322 failures 0 runtime errors 0
  • pseudogene
    • …only contains allowed attributes successes 1456 failures 0 runtime errors 0
    • …contains a pseudogenic_transcript successes 1456 failures 0 runtime errors 0
    • …has only allowed child types successes 1456 failures 0 runtime errors 0
    • …appears as a root node successes 1456 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 1456 failures 0 runtime errors 0
  • three_prime_UTR
    • …only contains allowed attributes successes 9 failures 0 runtime errors 0
    • …should not have children successes 9 failures 0 runtime errors 0
    • …appears as part of a gene successes 9 failures 0 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 10043 failures 54 runtime errors 0
      • ID: Tb927.2.2950:mRNA, file Tbruceibrucei927.noseq.gff3, line 7344
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.4220:mRNA, file Tbruceibrucei927.noseq.gff3, line 4323
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.1290:mRNA, file Tbruceibrucei927.noseq.gff3, line 65380
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.5130:mRNA, file Tbruceibrucei927.noseq.gff3, line 16028
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.2010:mRNA, file Tbruceibrucei927.noseq.gff3, line 12481
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.1070:mRNA, file Tbruceibrucei927.noseq.gff3, line 11436
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.5900:mRNA, file Tbruceibrucei927.noseq.gff3, line 9968
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.1260:mRNA, file Tbruceibrucei927.noseq.gff3, line 11600
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.1990:mRNA, file Tbruceibrucei927.noseq.gff3, line 2735
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3530:mRNA, file Tbruceibrucei927.noseq.gff3, line 14234
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.4390:mRNA, file Tbruceibrucei927.noseq.gff3, line 8716
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.290:mRNA, file Tbruceibrucei927.noseq.gff3, line 1531
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.3280:mRNA, file Tbruceibrucei927.noseq.gff3, line 3686
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.4150:mRNA, file Tbruceibrucei927.noseq.gff3, line 8516
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.4120:mRNA, file Tbruceibrucei927.noseq.gff3, line 15003
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.6070:mRNA, file Tbruceibrucei927.noseq.gff3, line 10153
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3650:mRNA, file Tbruceibrucei927.noseq.gff3, line 14347
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3860:mRNA, file Tbruceibrucei927.noseq.gff3, line 14540
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.3950:mRNA, file Tbruceibrucei927.noseq.gff3, line 4158
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.4190:mRNA, file Tbruceibrucei927.noseq.gff3, line 15074
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.1600:mRNA, file Tbruceibrucei927.noseq.gff3, line 65567
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.880:mRNA, file Tbruceibrucei927.noseq.gff3, line 1975
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.5160:mRNA, file Tbruceibrucei927.noseq.gff3, line 9443
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.260:mRNA, file Tbruceibrucei927.noseq.gff3, line 64755
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.2380:mRNA, file Tbruceibrucei927.noseq.gff3, line 66043
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3370:mRNA, file Tbruceibrucei927.noseq.gff3, line 13932
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.2410:mRNA, file Tbruceibrucei927.noseq.gff3, line 6722
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.3070:mRNA, file Tbruceibrucei927.noseq.gff3, line 66462
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.4210:mRNA, file Tbruceibrucei927.noseq.gff3, line 15088
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.4700.2, file Tbruceibrucei927.noseq.gff3, line 15621
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3310:mRNA, file Tbruceibrucei927.noseq.gff3, line 13883
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.4600:mRNA, file Tbruceibrucei927.noseq.gff3, line 67367
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.650:mRNA, file Tbruceibrucei927.noseq.gff3, line 10992
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.2130:mRNA, file Tbruceibrucei927.noseq.gff3, line 12607
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.5100:mRNA, file Tbruceibrucei927.noseq.gff3, line 4878
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.1560:mRNA, file Tbruceibrucei927.noseq.gff3, line 6016
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.7.6110:mRNA, file Tbruceibrucei927.noseq.gff3, line 42368
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.4460:mRNA, file Tbruceibrucei927.noseq.gff3, line 8824
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.1820:mRNA, file Tbruceibrucei927.noseq.gff3, line 65705
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3050:mRNA, file Tbruceibrucei927.noseq.gff3, line 13580
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.3810:mRNA, file Tbruceibrucei927.noseq.gff3, line 4055
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.3400:mRNA, file Tbruceibrucei927.noseq.gff3, line 7789
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.710:mRNA, file Tbruceibrucei927.noseq.gff3, line 65029
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.4030:mRNA, file Tbruceibrucei927.noseq.gff3, line 14932
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.320:mRNA, file Tbruceibrucei927.noseq.gff3, line 64794
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.4940:mRNA, file Tbruceibrucei927.noseq.gff3, line 67574
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.2510.2, file Tbruceibrucei927.noseq.gff3, line 12968
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.1.1720:mRNA, file Tbruceibrucei927.noseq.gff3, line 2557
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.1750:mRNA, file Tbruceibrucei927.noseq.gff3, line 65662
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.10.310:mRNA, file Tbruceibrucei927.noseq.gff3, line 64787
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.5220:mRNA, file Tbruceibrucei927.noseq.gff3, line 9487
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.3.3200:mRNA, file Tbruceibrucei927.noseq.gff3, line 13784
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.2.2390:mRNA, file Tbruceibrucei927.noseq.gff3, line 6701
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
      • ID: Tb927.5.1990:mRNA, file Tbruceibrucei927.noseq.gff3, line 25518
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:226: false is not truthy
    • …only contains allowed attributes successes 10095 failures 2 runtime errors 0
      • ID: Tb927.11.6870:mRNA, file Tbruceibrucei927.noseq.gff3, line 90431
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:149: [ID, Name, Parent, comment, Note, End_range, Start_range, Dbxref, controlled_curation, previous_systematic_id, stop_codon_redefined_as_selenocysteine] does not contain value product
      • ID: Tb927.7.5770:mRNA, file Tbruceibrucei927.noseq.gff3, line 41900
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:149: [ID, Name, Parent, comment, Note, End_range, Start_range, Dbxref, controlled_curation, previous_systematic_id, stop_codon_redefined_as_selenocysteine] does not contain value product_synonym
    • …has a coding sequence >= 3bp successes 10097 failures 0 runtime errors 0
    • …has at least one CDS child successes 10097 failures 0 runtime errors 0
    • …has only allowed child types successes 10097 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 10087 failures 8 runtime errors 0
      • ID: Tb11.40.0010:mRNA, file Tbruceibrucei927.noseq.gff3, line 75164
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: A does not match pattern [*+#]
      • ID: Tb05.5K5.10:mRNA, file Tbruceibrucei927.noseq.gff3, line 453
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: P does not match pattern [*+#]
      • ID: Tb927.8.8360:mRNA, file Tbruceibrucei927.noseq.gff3, line 53961
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: V does not match pattern [*+#]
      • ID: Tb10.v4.0053:mRNA, file Tbruceibrucei927.noseq.gff3, line 100743
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: S does not match pattern [*+#]
      • ID: Tb11.48.0003:mRNA, file Tbruceibrucei927.noseq.gff3, line 75200
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: A does not match pattern [*+#]
      • ID: Tb11.0420:mRNA, file Tbruceibrucei927.noseq.gff3, line 102397
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: Q does not match pattern [*+#]
      • ID: Tb10.v4.0130:mRNA, file Tbruceibrucei927.noseq.gff3, line 101270
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: N does not match pattern [*+#]
      • ID: Tb10.v4.0159:mRNA, file Tbruceibrucei927.noseq.gff3, line 101464
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:186: T does not match pattern [*+#]
    • …has non-selenocysteine CDS with no internal stop codons successes 10087 failures 7 runtime errors 0
      • ID: Tb11.40.0010:mRNA, file Tbruceibrucei927.noseq.gff3, line 75164
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: *II*DVSMQNYVV*LLLL*VLIYLCRYAACLVRVTLFH*KLLRMSVLNLFRKM*G*FGKPTIIWL*LEYLP*IMMGD*EGATFRGKRVGVIPKRQGR*IILLESCL*YIPFHLIQIAIASSE*SLKKRRS*SRILLFYLF matches pattern [*+#]
      • ID: Tb11.48.0001:mRNA, file Tbruceibrucei927.noseq.gff3, line 75178
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: MLRNLLLPLLLRCVFNTVSLESEQVNNINNVLVNYTKKPRVFAVLVQSHEIQGWCRLILSAKLSDVEIITVEMGGLYSNVKRPRWVMEFLERQNVSDEDIVIHVDESDAIVSDRDMYENAVDYFI*NTTENEHKFSEEDIVKEHLSIFDTQRKSG*EITSFTKIPPSGNPYLGVCGLIARVWAFGKFEYAFGELLKGSEKWWSE*SIYTPLLIWSVTQEEAV*QRFVLKRGIIGLDYEERFFTIPYSGEVEETPFIHFSAANCRGQMTKLIVRNLTWCEELEGREFGTQYLN*IETFLIHGEELDFEYMNVCDEGFIEEDFL*AKKV matches pattern [*+#]
      • ID: Tb11.48.0004:mRNA, file Tbruceibrucei927.noseq.gff3, line 75194
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: STTVFFAMPLSLLSPVGASAFCVCSAPQNAAPVLIAAETEETCSTKGTGDNCKPPAKTLKKKVAKKFKLNTEATKQTKKQTGTGRTSA*VDCSKLETQEKWERANESQTTKVREWKGETSYLSDK*GYKCSSSSIFINKKFSLMDATYVIW matches pattern [*+#]
      • ID: Tb11.48.0003:mRNA, file Tbruceibrucei927.noseq.gff3, line 75200
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: MAVFISFFATVAFVLVTYETHVQAANKKPLVKAAWNAVCDVAAELYDVSEATKEATASKRRVVDKMQQQLLRTRILIQTLISDQDVKRFTTVAKYLETKLAAALKNLLGSDATTAEDILTKTAFANGHIREFLVIASGATQSGSAGCISNHASDGGSELKTLSQLIREHGPCKALENEKPTGYDRTQAVTATGFKQFTSGGSAVSGSEKGCRLLTTENSEGYIEGTLDTPEVAMAGGLLTASSAGGKFTALDNIDATSKDDKNKIIKQVWESLKKKPTKVAEYTDDDISTLKSESTFQDAFRSIFGASKDTEADRIAETIEKQYPKKGNDFNKQIWQRIADTSLKSEISGQEKGTKIGTIDDIGTLTVILRNFTGERLKKEREREQQKSETKCNAEATQQAISADCTKLEKAECKPDLGCKYN*TATKCENDPKSLVVQANQETGKTDGGVKCSDHKDQSTCEQANEGKDKPVCGLRNGREDEDYEDTEKCRNGSFLVNKKLDPSMA matches pattern [*+#]
      • ID: Tb11.48.0002:mRNA, file Tbruceibrucei927.noseq.gff3, line 75187
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: MPTLHRQLLWFVGLFTSLAEPAGENVRQFYALCTA*QAARAPLD*PQTADDNKVEAVPETIKALYATATPDQYFNNETYGLFTAKAEFDAIKNTLKNTKTTDEQLVYKRIPEKPTKKPAETALERLYNKTDQLVTAANAKIKNIKQKHTEARQQLEQTLGGKTDASTVSSDDFTGRPNGCTPTAANSAKQTLPQALVCLCSASSNGGGICGDGIGDTTYGTNSASTAAAALYKKLATKCPQPRTLRATQRSLTAALTAVTAAIDNPAFTGHTNTGTYVIGNGNGGDCAGGDSNSACVDYTEIMKGGDIANVAWAANLQAASTKLDEAKNLQAELYNLRTAIKQNENLAWKIRDTADIVAAVPRKTTPTQQRKITEIDCEKNKEKKNQNNNCKWDSRTEKTGNHCKPADGEAQTKTAGGEAEKDKCSAAQNAEDCAKVKGDIPTGKKAVCGWIDYVEGTGPVTPGCRSSSFLLSKQFALRVDSSFVALLF matches pattern [*+#]
      • ID: Tb11.29.0001:mRNA, file Tbruceibrucei927.noseq.gff3, line 75170
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: MLTQTFFILKTLFLMQYITAPETVAVQPGYSGA*HKELC*LVERAQRPPAQVVNKLEAKAATDTIALFNMTFSEDSWQRLCA*DTENNKWERV*VKYTDQGQKTDWAKNLENWRKVAKDLEAKANDDAWKAKHAKPTIPHALHLAQRNLRQLARQAAAEYLLYQTLVITANAADITAVLINLSSALNGATAQLTKPVKPTDLGIAASARTTGMSGGNKVGQKLLYDLACLCVAETKYYSKVCVELTGKNGWTSTQGNTITDATAALNACGITQNPSLTARATRAAIANCYSMLGRHSDANSNSAIQGRSTAGQKCSGGADDMCVNAGTITTGDTTKNKPILWVEKMLQEVTALESRDSHVTEANSVLHRLLKLREAAKGAFEFAALLAELLLQPKHAATGKTDPQKKQCNQRKSNKTCTANK*KWGSTTEPTGDHCKPKDREARTNQGTGDGASGAGTTSEKCKGELEPEFTKALECKWEDNKCKDSSFLLKFALNMAASFKELVEF matches pattern [*+#]
      • ID: Tb11.16.0004:mRNA, file Tbruceibrucei927.noseq.gff3, line 75226
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:204: MFQEVVTAIIFAVSSAQAAHENVKEIRDMCGLYGLLIQPIADSQIVSTDGTTKENPRVEMQTVIRKSIDFNLTFIAKRIAEALAPKKHAQDTNKLKTEQSDVQV*FIGPYPATIRIMIESSKDLVDKMKPSGDVAKKFALQLHPATTQTTKGSRSLDDGSPKEASKFKYSSGHYHGKKTGNPAENGRGALRPAAKPEQSVSDMAVDTPYIVVLVPTAFQREGTDRDNTCEKAATSFAKKAGYESATDIICFCSVQANNGCNNICGEGSSESNAIHSSGQVQKATEVWTTIVKQCDALNGGKPPLLTPAALTAEVTAIFSHLEKNYIALTGPPTHTTLVGKRRHFLGFHTIYNS*PSCKAPANTATTAGKGVCIDLSQMRDAKGIPWVALVKQAAGDLEATQTNIGAAKELVGLAESIRTTMKGLFQIEPFVSTHSCSLTANADISPEPTTTLQHKCKAKNTTADECPSKH*NYDKDKGCTPKA*ATTATGTRIGDGDTGRATTENVGLTAGAKAACGCIEEKCKDSSILVNKKLDFMAYVFVTLV matches pattern [*+#]
    • …consists of less than 50% Ns successes 10097 failures 0 runtime errors 0
    • …appears as part of a gene successes 10097 failures 0 runtime errors 0
  • direct_repeat
    • …appears as a root node successes 7527 failures 0 runtime errors 0
    • …should not have children successes 7527 failures 0 runtime errors 0
  • ncRNA
    • …only contains allowed attributes successes 29 failures 0 runtime errors 0
    • …should not have children successes 29 failures 0 runtime errors 0
    • …appears as part of a gene successes 29 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 369 failures 0 runtime errors 0
    • …should not have children successes 369 failures 0 runtime errors 0
    • …appears as part of a gene successes 369 failures 0 runtime errors 0
  • pseudogenic_transcript
    • …only contains allowed attributes successes 1456 failures 0 runtime errors 0
    • …appears as part of a pseudogene successes 1456 failures 0 runtime errors 0
    • …has only allowed child types successes 1455 failures 0 runtime errors 0
    • …contains at least one pseudogenic_exon successes 1455 failures 1 runtime errors 0
      • ID: Tb927.11.19290:pseudogenic_transcript, file Tbruceibrucei927.noseq.gff3, line 75644
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:105: expecting true, not false
  • five_prime_UTR
    • …only contains allowed attributes successes 8965 failures 0 runtime errors 0
    • …should not have children successes 8965 failures 0 runtime errors 0
    • …appears as part of a gene successes 8965 failures 0 runtime errors 0
  • repeat_region
    • …appears as a root node successes 442 failures 0 runtime errors 0
    • …should not have children successes 442 failures 0 runtime errors 0
  • polypeptide
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 11552 failures 1 runtime errors 0
      • ID: Tb927.11.19290:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75646
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:387: 0 is smaller than 0
    • …only contains allowed attributes successes 11561 failures 0 runtime errors 0
    • …has a required product attribute successes 11561 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 11553 failures 8 runtime errors 0
      • ID: Tb11.v4.0023:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75159
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.v4.0020:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75155
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.v4.0019:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75153
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.01.0580:pep, file Tbruceibrucei927.noseq.gff3, line 75089
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.v4.0017:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75149
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.v4.0018:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75151
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.v4.0022:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75157
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
      • ID: Tb11.v4.0009:pseudogenic_transcript:pep, file Tbruceibrucei927.noseq.gff3, line 75133
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:350: 0 is smaller than 0
    • …must be derived_from a unique mRNA successes 11560 failures 0 runtime errors 1
      • ID: Tb11.01.0580:pep, file Tbruceibrucei927.noseq.gff3, line 75089
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:297: should not be nil but is nil
        • /nfs/users/nfs_s/ss34/new_gff_format.lua:299: table index is nil
    • …appears as a root node successes 11561 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 10111 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 10111 failures 0 runtime errors 0
    • …only contains allowed attributes successes 10111 failures 0 runtime errors 0
  • gap
    • …appears as a root node successes 59 failures 0 runtime errors 0
    • …should not have children successes 59 failures 0 runtime errors 0
    • …only contains allowed attributes successes 59 failures 0 runtime errors 0
  • centromere
    • …appears as a root node successes 8 failures 0 runtime errors 0
    • …should not have children successes 8 failures 0 runtime errors 0
  • pseudogenic_exon
    • …appears as part of a pseudogenic_transcript successes 2245 failures 0 runtime errors 0
    • …should not have children successes 2245 failures 0 runtime errors 0
    • …only contains allowed attributes successes 2245 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 6 failures 0 runtime errors 0
    • …should not have children successes 6 failures 0 runtime errors 0
    • …appears as part of a gene successes 6 failures 0 runtime errors 0
  • repeat_unit
    • …appears as a root node successes 1656 failures 0 runtime errors 0
    • …should not have children successes 1656 failures 0 runtime errors 0
  • gene
    • …only contains allowed attributes successes 10659 failures 0 runtime errors 0
    • …has consistent strands across all children successes 10659 failures 0 runtime errors 0
    • …has only allowed child types successes 10657 failures 0 runtime errors 0
    • …appears as a root node successes 10659 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 10659 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 105 failures 0 runtime errors 0
    • …should not have children successes 105 failures 0 runtime errors 0
    • …appears as part of a gene successes 105 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 66 failures 0 runtime errors 0
    • …should not have children successes 66 failures 0 runtime errors 0
    • …appears as part of a gene successes 66 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings