# Description of the fields in the following header # ================================================= # # Pathway Name: a user friendly name of the pathway. # Pathway Frame-id: a unique identifier of the pathway in the PGDB. # Pathway Class Name: a user friendly name of a class that contains the pathway. # Pathway Class Frame-id: a unique identifier of the Class Name in the PGDB. # Pathway Frequency Score: the sum of the number of enzymes in the PGDB catalyzing the reactions of the pathway divided by the number of reactions in the pathway. This value can be larger than 1 since there might be several enzymes catalyzing the same reaction. # Pathway Score: the number of catalyzed reactions (for which we have a known enzyme in the PGDB) divided by the number of reactions in the pathway. This value cannot be larger than 1. # Pathway Abundance: the abundance of the pathway given the abundance values of the genes for this pathway in the annotation file. # Pathway Confidence Factor: a value in the range 0 to 100 where a high value means a high confidence in the inference of this pathway. # Reason to Keep: # Pathway URL: the pathway URL for the Biocyc.org Web site. Pathway Name | Pathway Frame-id | Pathway Class Name | Pathway Class Frame-id | Pathway Frequency Score | Pathway Score | Pathway Abundance | Pathway Confidence Factor | Reason to Keep | Pathway URL gluconeogenesis III|PWY66-399|Gluconeogenesis|Gluconeogenesis|1.6153846|0.7692308|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-399 GDP-mannose biosynthesis|PWY-5659|GDP Mannose Biosynthesis|GDP-Mannose-Biosynthesis|0.75|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5659 UDP-D-xylose and UDP-D-glucuronate biosynthesis|PWY-4821|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-4821 GDP-L-fucose biosynthesis I (from GDP-D-mannose)|PWY-66|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-66 glycogen biosynthesis II (from UDP-D-Glucose)|PWY-5067|Glucogen and Starch Biosynthesis|GLYCOGEN-BIOSYN|0.8|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5067 glycoaminoglycan-protein linkage region biosynthesis|PWY-6557|||0.75|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6557 dolichyl-diphosphooligosaccharide biosynthesis|MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS|||0.33333334|0.26666668|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS PRPP biosynthesis I|PWY0-662|PRPP Biosynthesis|PRPP-Biosynthesis|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-662 myo-inositol biosynthesis|PWY-2301|||1.0|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-2301 D-myo-inositol (1,4,5)-trisphosphate biosynthesis|PWY-6351|||1.6|0.8|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6351 D-myo-inositol (1,4,5)-trisphosphate degradation|PWY-6363|||0.6666667|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6363 tRNA charging|TRNA-CHARGING-PWY|||1.65|0.95|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=TRNA-CHARGING-PWY pyrimidine deoxyribonucleotides biosynthesis from CTP|PWY-7210|||1.0|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7210 pyrimidine deoxyribonucleosides salvage|PWY-7199|||0.6|0.4|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7199 CMP phosphorylation|PWY-7205|||3.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7205 pyrimidine deoxyribonucleotide phosphorylation|PWY-7197|||1.75|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7197 pyrimidine ribonucleosides salvage I|PWY-7193|||3.3333333|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7193 pyrimidine nucleobases salvage I|PWY-7183|||3.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7183 pyrimidine deoxyribonucleotides de novo biosynthesis I|PWY-7184|Pyrimidine Deoxyribonucleotides De Novo Biosynthesis|Pyrimid-Deoxyribonucleot-De-Novo-Biosyn|0.6666667|0.33333334|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7184 UTP and CTP de novo biosynthesis|PWY-7176|||2.3333333|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7176 UMP biosynthesis|PWY-5686|||0.16666667|0.16666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5686 adenine and adenosine salvage III|PWY-6609|Adenine and Adenosine Salvage|Adenine-Adenosine-Salvage|2.5|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6609 adenine and adenosine salvage I|P121-PWY|Adenine and Adenosine Salvage|Adenine-Adenosine-Salvage|4.5|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=P121-PWY adenine and adenosine salvage II|PWY-6605|Adenine and Adenosine Salvage|Adenine-Adenosine-Salvage|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6605 guanine and guanosine salvage I|PWY-6620|Guanine and Guanosine Salvage|Guanine-Guanosine-Salvage|4.5|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6620 guanine and guanosine salvage II|PWY-6599|Guanine and Guanosine Salvage|Guanine-Guanosine-Salvage|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6599 xanthine and xanthosine salvage|SALVPURINE2-PWY|Purine Nucleotide Salvage|Purine-Nucleotides-Salvage|4.0|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=SALVPURINE2-PWY adenosine nucleotides de novo biosynthesis|PWY-6126|Purine Nucleotides De Novo Biosynthesis|Purine-Nucleotide-De-Novo-Biosynthesis|3.0|0.875|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6126 tRNA methylation (yeast)|PWY-6829|||0.35714287|0.35714287|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6829 glycine biosynthesis I|GLYSYN-PWY|Glycine Biosynthesis|GLYCINE-SYN|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLYSYN-PWY proline biosynthesis II (from arginine)|PWY-4981|Proline Biosynthesis|PROLINE-SYN|0.33333334|0.33333334|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-4981 aspartate biosynthesis|ASPARTATESYN-PWY|Aspartate Biosynthesis|ASPARTATE-SYN|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ASPARTATESYN-PWY glutamate biosynthesis II|GLUTAMATE-SYN2-PWY|Glutamate Biosynthesis|GLUTAMATE-SYN|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTAMATE-SYN2-PWY glutamate biosynthesis III|GLUTSYNIII-PWY|Glutamate Biosynthesis|GLUTAMATE-SYN|0.0|0.0|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTSYNIII-PWY alanine biosynthesis II|ALANINE-SYN2-PWY|Alanine Biosynthesis|ALANINE-SYN|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ALANINE-SYN2-PWY alanine biosynthesis III|PWY0-1021|Alanine Biosynthesis|ALANINE-SYN|4.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1021 selenocysteine biosynthesis II (archaea and eukaryotes)|PWY-6281|Selenocysteine Biosynthesis|Selenocysteine-Biosynthesis|0.75|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6281 L-Ndelta-acetylornithine biosynthesis|PWY-6922|||0.33333334|0.33333334|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6922 arginine biosynthesis IV|ARGININE-SYN4-PWY|Arginine Biosynthesis|ARGININE-SYN|0.5|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=ARGININE-SYN4-PWY glutamine biosynthesis I|GLNSYN-PWY|Glutamine Biosynthesis|GLUTAMINE-SYN|1.0|1.0|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=GLNSYN-PWY hypusine biosynthesis|PWY-5905|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5905 spermidine biosynthesis I|BSUBPOLYAMSYN-PWY|Spermidine Biosynthesis|Spermidine-Biosynthesis|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=BSUBPOLYAMSYN-PWY UDP-N-acetyl-D-glucosamine biosynthesis II|UDPNACETYLGALSYN-PWY|UDP-N-acetyl-D-glucosamine Biosynthesis|UDP-NAc-Glucosamine-Biosynthesis|0.5|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=UDPNACETYLGALSYN-PWY gamma-linolenate biosynthesis II (animals)|PWY-6000|gamma-Linolenate Biosynthesis|Gamma-linolenate-Biosynthesis|3.0|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6000 very long chain fatty acid biosynthesis I|PWY-5080|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5080 very long chain fatty acid biosynthesis II|PWY-7036|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7036 CDP-diacylglycerol biosynthesis I|PWY-5667|CDP-diacylglycerol Biosynthesis|CDP-diacylglycerol-Biosynthesis|2.0|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5667 3-phosphoinositide biosynthesis|PWY-6352|||0.875|0.375|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6352 heme biosynthesis from uroporphyrinogen-III I|HEME-BIOSYNTHESIS-II|Heme Biosynthesis|HEME-SYN|0.75|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=HEME-BIOSYNTHESIS-II lipoate biosynthesis and incorporation I|PWY0-501|Lipoate Biosynthesis|Lipoate-Biosynthesis|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-501 tetrapyrrole biosynthesis II (from glycine)|PWY-5189|Tetrapyrrole Biosynthesis|Tetrapyrrole-Biosynthesis|0.75|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5189 coenzyme A biosynthesis|COA-PWY|Coenzyme A Biosynthesis|CoA-Biosynthesis|1.25|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=COA-PWY glutathione biosynthesis|GLUTATHIONESYN-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTATHIONESYN-PWY thioredoxin pathway|THIOREDOX-PWY|||0.5|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=THIOREDOX-PWY geranylgeranyldiphosphate biosynthesis|PWY-5120|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5120 di-trans,poly-cis-undecaprenyl phosphate biosynthesis|PWY-5785|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5785 flavin biosynthesis IV (mammalian)|PWY66-366|Flavin Biosynthesis|Flavin-Biosynthesis|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-366 thiamin salvage III|PWY-6898|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6898 formylTHF biosynthesis I|1CMET2-PWY|Folate Biosynthesis|Folate-Biosynthesis|0.41666666|0.41666666|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=1CMET2-PWY folate transformations I|PWY-2201|Folate Biosynthesis|Folate-Biosynthesis|0.25|0.25|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-2201 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate|PWY-6613|Folate Biosynthesis|Folate-Biosynthesis|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6613 pyridoxal 5'-phosphate salvage pathway|PLPSAL-PWY|Vitamin B6 Biosynthesis|Vitamin-B6-Biosynthesis|0.6|0.6|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PLPSAL-PWY retinol biosynthesis|PWY-6857|||0.14285715|0.14285715|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6857 NAD salvage pathway III|PWY3O-4106|NAD Biosynthesis|NAD-SYN|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY3O-4106 NAD phosphorylation and dephosphorylation|NADPHOS-DEPHOS-PWY|||0.6666667|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=NADPHOS-DEPHOS-PWY mevalonate pathway I|PWY-922|||0.5714286|0.5714286|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-922 S-adenosyl-L-methionine biosynthesis|SAM-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=SAM-PWY betanidin degradation|PWY-5461|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5461 glycogen degradation I|GLYCOCAT-PWY|Glycogen Degradation|Glycogen-Degradation|1.1428572|0.5714286|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=GLYCOCAT-PWY glycogen degradation II|PWY-5941|Glycogen Degradation|Glycogen-Degradation|1.2|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5941 lactose degradation III|BGALACT-PWY|Lactose Degradation|LACTOSE-DEG|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=BGALACT-PWY phosphate utilization in cell wall regeneration|PWY-6357|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6357 phosphate acquisition|PWY-6348|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6348 tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde|PWY-5651|Tryptophan Degradation|TRYPTOPHAN-DEG|0.2|0.2|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5651 alanine degradation III|ALANINE-DEG3-PWY|Alanine Degradation|ALANINE-DEG|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ALANINE-DEG3-PWY aspartate degradation I|ASPARTATE-DEG1-PWY|Aspartate Degradation|ASPARTATE-DEG|2.0|1.0|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=ASPARTATE-DEG1-PWY aspartate degradation II|MALATE-ASPARTATE-SHUTTLE-PWY|Aspartate Degradation|ASPARTATE-DEG|3.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=MALATE-ASPARTATE-SHUTTLE-PWY glutamate degradation X|PWY-5766|Glutamate Degradation|GLUTAMATE-DEG|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5766 arginine degradation VI (arginase 2 pathway)|ARG-PRO-PWY|Proline Biosynthesis|PROLINE-SYN|0.75|0.75|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ARG-PRO-PWY phenylalanine degradation IV (mammalian, via side chain)|PWY-6318|Phenylalanine Degradation|PHENYLALANINE-DEG|0.22222222|0.11111111|1|70|HAS-UNIQUE-ENZYME|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6318 methionine degradation I (to homocysteine)|METHIONINE-DEG1-PWY|Methionine Degradation|METHIONINE-DEG|0.6666667|0.6666667|1|70|MOSTLY-PRESENT|http://biocyc.org/META/new-image?type=PATHWAY&object=METHIONINE-DEG1-PWY seed germination protein turnover|PWY-6018|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6018 wound-induced proteolysis I|PWY-5988|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5988 purine deoxyribonucleosides degradation|PWY-7179|Purine Nucleotides Degradation|Purine-Degradation|4.25|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7179 purine ribonucleosides degradation|PWY0-1296|Purine Nucleotides Degradation|Purine-Degradation|5.0|0.8|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1296 urate biosynthesis/inosine 5'-phosphate degradation|PWY-5695|Purine Nucleotides Degradation|Purine-Degradation|3.25|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5695 pyrimidine deoxyribonucleosides degradation|PWY-7181|||1.0|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7181 S-methyl-5'-thioadenosine degradation II|PWY-6756|S-methyl-5'-thioadenosine Degradation|Methylthioadenosine-Degradation|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6756 acetate conversion to acetyl-CoA|PWY0-1313|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1313 phospholipases|LIPASYN-PWY|||1.0|0.4|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=LIPASYN-PWY triacylglycerol degradation|LIPAS-PWY|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=LIPAS-PWY sulfate activation for sulfonation|PWY-5340|||2.5|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5340 fatty acid activation|PWY-5143|||6.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5143 4-hydroxy-2-nonenal detoxification|PWY-7112|||1.0|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7112 superoxide radicals degradation|DETOX1-PWY|||1.0|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=DETOX1-PWY glycerol-3-phosphate shuttle|PWY-6118|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6118 glycolysis VI (mammalian)|PWY66-400|Glycolysis|GLYCOLYSIS-VARIANTS|2.0|0.9|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-400 glycolysis II (from fructose-6P)|PWY-5484|Glycolysis|GLYCOLYSIS-VARIANTS|1.9|0.9|1|70|MOSTLY-PRESENT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5484 aerobic respiration (cytochrome c)|PWY-3781|||1.25|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-3781 2-oxoglutarate decarboxylation to succinyl-CoA|PWY-5084|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5084 TCA cycle VII (mammalian)|PWY66-398|TCA cycle|TCA-VARIANTS|1.7|0.9|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-398 pyruvate fermentation to lactate|PWY-5481|Pyruvate Fermentation|Pyruvate-Degradation|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5481 acetyl-CoA biosynthesis III (from citrate)|PWY-5172|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5172 pyruvate decarboxylation to acetyl CoA|PYRUVDEHYD-PWY|||1.3333334|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PYRUVDEHYD-PWY pentose phosphate pathway (oxidative branch)|OXIDATIVEPENT-PWY|||0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=OXIDATIVEPENT-PWY pentose phosphate pathway (non-oxidative branch)|NONOXIPENT-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=NONOXIPENT-PWY pentose phosphate pathway (partial)|P21-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=P21-PWY NADH repair|PWY-6938|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6938