# Description of the fields in the following header
# =================================================
#  
# Pathway Name: a user friendly name of the pathway.
# Pathway Frame-id: a unique identifier of the pathway in the PGDB.
# Pathway Class Name: a user friendly name of a class that contains the pathway.
# Pathway Class Frame-id: a unique identifier of the Class Name in the PGDB.
# Pathway Frequency Score: the sum of the number of enzymes in the PGDB catalyzing the reactions of the pathway divided by the number of reactions in the pathway. This value can be larger than 1 since there might be several enzymes catalyzing the same reaction.
# Pathway Score: the number of catalyzed reactions (for which we have a known enzyme in the PGDB) divided by the number of reactions in the pathway. This value cannot be larger than 1.
# Pathway Abundance: the abundance of the pathway given the abundance values of the genes for this pathway in the annotation file.
# Pathway Confidence Factor: a value in the range 0 to 100 where a high value means a high confidence in the inference of this pathway.
# Reason to Keep: 
# Pathway URL: the pathway URL for the Biocyc.org Web site.


Pathway Name | Pathway Frame-id | Pathway Class Name | Pathway Class Frame-id | Pathway Frequency Score | Pathway Score | Pathway Abundance | Pathway Confidence Factor | Reason to Keep | Pathway URL

pentose phosphate pathway (oxidative branch)|OXIDATIVEPENT-PWY|||0.75|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=OXIDATIVEPENT-PWY
pentose phosphate pathway (non-oxidative branch)|NONOXIPENT-PWY|||1.0|0.8|1|70|MOSTLY-PRESENT|http://biocyc.org/META/new-image?type=PATHWAY&object=NONOXIPENT-PWY
pentose phosphate pathway (partial)|P21-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=P21-PWY
acetyl-CoA biosynthesis III (from citrate)|PWY-5172|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5172
pyruvate fermentation to lactate|PWY-5481|Pyruvate Fermentation|Pyruvate-Degradation|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5481
aerobic respiration (cytochrome c)|PWY-3781|||1.5|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-3781
glycolysis VI (mammalian)|PWY66-400|Glycolysis|GLYCOLYSIS-VARIANTS|1.1|0.9|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-400
glycerol-3-phosphate shuttle|PWY-6118|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6118
NADH repair|PWY-6938|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6938
glutamate dependent acid resistance|PWY0-1305|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1305
superoxide radicals degradation|DETOX1-PWY|||2.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=DETOX1-PWY
formaldehyde oxidation V (tetrahydrofolate pathway)|PWY-1722|Formaldehyde Oxidation|Formaldehyde-Oxidation|0.75|0.75|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-1722
methylglyoxal degradation I|PWY-5386|Methylglyoxal Detoxification|Methylglyoxal-Detoxification|1.6666666|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5386
fatty acid beta-oxidation I|FAO-PWY|Fatty Acids Degradation|Fatty-Acid-Degradation|1.0|0.42857143|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=FAO-PWY
mitochondrial L-carnitine shuttle pathway|PWY-6111|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6111
3-phosphoinositide degradation|PWY-6368|||0.11111111|0.11111111|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6368
triacylglycerol degradation|LIPAS-PWY|||1.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=LIPAS-PWY
methylmalonyl pathway|PROPIONMET-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PROPIONMET-PWY
acetate conversion to acetyl-CoA|PWY0-1313|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1313
pyruvate decarboxylation to acetyl CoA|PYRUVDEHYD-PWY|||1.3333334|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PYRUVDEHYD-PWY
4-hydroxy-2-nonenal detoxification|PWY-7112|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7112
UTP and CTP dephosphorylation II|PWY-7177|||0.6666667|0.6666667|1|70|HAS-UNIQUE-ENZYME|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7177
UTP and CTP dephosphorylation I|PWY-7185|||1.5714285|0.5714286|1|70|HAS-UNIQUE-ENZYME|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7185
purine deoxyribonucleosides degradation|PWY-7179|Purine Nucleotides Degradation|Purine-Degradation|1.75|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7179
purine ribonucleosides degradation|PWY0-1296|Purine Nucleotides Degradation|Purine-Degradation|2.0|0.8|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1296
seed germination protein turnover|PWY-6018|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6018
wound-induced proteolysis I|PWY-5988|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5988
valine degradation I|VALDEG-PWY|Valine Degradation|VALINE-DEG|0.625|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=VALDEG-PWY
methionine degradation I (to homocysteine)|METHIONINE-DEG1-PWY|Methionine Degradation|METHIONINE-DEG|1.0|0.6666667|1|70|MOSTLY-PRESENT|http://biocyc.org/META/new-image?type=PATHWAY&object=METHIONINE-DEG1-PWY
phenylalanine degradation IV (mammalian, via side chain)|PWY-6318|Phenylalanine Degradation|PHENYLALANINE-DEG|0.22222222|0.11111111|1|70|HAS-UNIQUE-ENZYME|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6318
glycine cleavage|GLYCLEAV-PWY|Glycine Degradation|GLYCINE-DEG|0.6666667|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=GLYCLEAV-PWY
isoleucine degradation I|ILEUDEG-PWY|Isoleucine Degradation|ISOLEUCINE-DEG|0.8333333|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=ILEUDEG-PWY
glutamate degradation X|PWY-5766|Glutamate Degradation|GLUTAMATE-DEG|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5766
aspartate degradation I|ASPARTATE-DEG1-PWY|Aspartate Degradation|ASPARTATE-DEG|2.0|1.0|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=ASPARTATE-DEG1-PWY
aspartate degradation II|MALATE-ASPARTATE-SHUTTLE-PWY|Aspartate Degradation|ASPARTATE-DEG|1.5|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=MALATE-ASPARTATE-SHUTTLE-PWY
threonine degradation II|THREONINE-DEG2-PWY|Threonine Degradation|THREONINE-DEG|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=THREONINE-DEG2-PWY
alanine degradation III|ALANINE-DEG3-PWY|Alanine Degradation|ALANINE-DEG|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ALANINE-DEG3-PWY
tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde|PWY-5651|Tryptophan Degradation|TRYPTOPHAN-DEG|0.2|0.2|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5651
glutamine degradation I|GLUTAMINDEG-PWY|Glutamine Degradation|GLUTAMINE-DEG|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTAMINDEG-PWY
2-oxoisovalerate decarboxylation to isobutanoyl-CoA|PWY-5046|||0.6666667|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5046
2-oxoglutarate decarboxylation to succinyl-CoA|PWY-5084|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5084
sulfate activation for sulfonation|PWY-5340|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5340
phosphate utilization in cell wall regeneration|PWY-6357|||7.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6357
phosphate acquisition|PWY-6348|||7.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6348
ethanol degradation II|PWY66-21|Ethanol Degradation|Ethanol-Degradation|1.0|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-21
trehalose degradation VI (periplasmic)|PWY0-1466|Trehalose Degradation|Trehalose-Degradation|2.0|0.5|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1466
lactose degradation III|BGALACT-PWY|Lactose Degradation|LACTOSE-DEG|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=BGALACT-PWY
chitin degradation II|PWY-6902|Chitin Degradation|Chitin-Degradation|2.2|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6902
glycogen degradation II|PWY-5941|Glycogen Degradation|Glycogen-Degradation|0.8|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5941
betanidin degradation|PWY-5461|||8.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5461
N-acetylglucosamine degradation I|GLUAMCAT-PWY|N-acetylglucosamine degradation|N-Acetylglucosamine-Degradation|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUAMCAT-PWY
NAD salvage pathway III|PWY3O-4106|NAD Biosynthesis|NAD-SYN|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY3O-4106
NAD phosphorylation and dephosphorylation|NADPHOS-DEPHOS-PWY|||0.33333334|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=NADPHOS-DEPHOS-PWY
ubiquinol-9 biosynthesis (eukaryotic)|PWY-5871|||0.0|0.0|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5871
ubiquinol-10 biosynthesis (eukaryotic)|PWY-5872|||0.0|0.0|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5872
retinol biosynthesis|PWY-6857|||0.71428573|0.14285715|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6857
adenosylcobalamin salvage from cobalamin|PWY-6268|Adenosylcobalamin Biosynthesis|Adenosylcobalamin-Biosynthesis|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6268
pyridoxal 5'-phosphate salvage pathway|PLPSAL-PWY|Vitamin B6 Biosynthesis|Vitamin-B6-Biosynthesis|0.4|0.4|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PLPSAL-PWY
formylTHF biosynthesis I|1CMET2-PWY|Folate Biosynthesis|Folate-Biosynthesis|0.6666667|0.5833333|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=1CMET2-PWY
folate transformations I|PWY-2201|Folate Biosynthesis|Folate-Biosynthesis|0.5833333|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-2201
folate polyglutamylation|PWY-2161|Folate Biosynthesis|Folate-Biosynthesis|0.6|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-2161
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate|PWY-6613|Folate Biosynthesis|Folate-Biosynthesis|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6613
thiamin salvage III|PWY-6898|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6898
geranylgeranyldiphosphate biosynthesis|PWY-5120|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5120
molybdenum cofactor biosynthesis|PWY-6823|Molybdenum Cofactor Biosynthesis|Molybdenum-Cofactor-Biosynthesis|0.2857143|0.2857143|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6823
glutathione biosynthesis|GLUTATHIONESYN-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTATHIONESYN-PWY
thioredoxin pathway|THIOREDOX-PWY|||1.0|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=THIOREDOX-PWY
coenzyme A biosynthesis|COA-PWY|Coenzyme A Biosynthesis|CoA-Biosynthesis|1.0|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=COA-PWY
lipoate biosynthesis and incorporation I|PWY0-501|Lipoate Biosynthesis|Lipoate-Biosynthesis|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-501
thio-molybdenum cofactor biosynthesis|PWY-5963|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5963
S-adenosyl-L-methionine biosynthesis|SAM-PWY|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=SAM-PWY
CDP-diacylglycerol biosynthesis I|PWY-5667|CDP-diacylglycerol Biosynthesis|CDP-diacylglycerol-Biosynthesis|0.75|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5667
3-phosphoinositide biosynthesis|PWY-6352|||0.75|0.25|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6352
gamma-linolenate biosynthesis II (animals)|PWY-6000|gamma-Linolenate Biosynthesis|Gamma-linolenate-Biosynthesis|1.0|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6000
very long chain fatty acid biosynthesis I|PWY-5080|||0.5|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5080
very long chain fatty acid biosynthesis II|PWY-7036|||0.5|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7036
triacylglycerol biosynthesis|TRIGLSYN-PWY|||0.33333334|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=TRIGLSYN-PWY
fatty acid activation|PWY-5143|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5143
UDP-N-acetyl-D-glucosamine biosynthesis II|UDPNACETYLGALSYN-PWY|UDP-N-acetyl-D-glucosamine Biosynthesis|UDP-NAc-Glucosamine-Biosynthesis|0.75|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=UDPNACETYLGALSYN-PWY
UDP-N-acetyl-D-glucosamine biosynthesis I|UDPNAGSYN-PWY|UDP-N-acetyl-D-glucosamine Biosynthesis|UDP-NAc-Glucosamine-Biosynthesis|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=UDPNAGSYN-PWY
putrescine biosynthesis III|PWY-46|Putrescine Biosynthesis|Putrescine-Biosynthesis|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-46
urate biosynthesis/inosine 5'-phosphate degradation|PWY-5695|Purine Nucleotides Degradation|Purine-Degradation|3.0|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5695
glutamine biosynthesis I|GLNSYN-PWY|Glutamine Biosynthesis|GLUTAMINE-SYN|1.0|1.0|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=GLNSYN-PWY
arginine biosynthesis IV|ARGININE-SYN4-PWY|Arginine Biosynthesis|ARGININE-SYN|0.33333334|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=ARGININE-SYN4-PWY
cysteine biosynthesis/homocysteine degradation|HOMOCYSDEGR-PWY|Cysteine Biosynthesis|CYSTEINE-SYN|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=HOMOCYSDEGR-PWY
selenocysteine biosynthesis II (archaea and eukaryotes)|PWY-6281|Selenocysteine Biosynthesis|Selenocysteine-Biosynthesis|0.75|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6281
alanine biosynthesis II|ALANINE-SYN2-PWY|Alanine Biosynthesis|ALANINE-SYN|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ALANINE-SYN2-PWY
alanine biosynthesis III|PWY0-1021|Alanine Biosynthesis|ALANINE-SYN|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-1021
glutamate biosynthesis II|GLUTAMATE-SYN2-PWY|Glutamate Biosynthesis|GLUTAMATE-SYN|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTAMATE-SYN2-PWY
glutamate biosynthesis III|GLUTSYNIII-PWY|Glutamate Biosynthesis|GLUTAMATE-SYN|0.0|0.0|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=GLUTSYNIII-PWY
aspartate biosynthesis|ASPARTATESYN-PWY|Aspartate Biosynthesis|ASPARTATE-SYN|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=ASPARTATESYN-PWY
proline biosynthesis I|PROSYN-PWY|Proline Biosynthesis|PROLINE-SYN|0.75|0.75|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PROSYN-PWY
proline biosynthesis II (from arginine)|PWY-4981|Proline Biosynthesis|PROLINE-SYN|0.33333334|0.33333334|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-4981
glycine biosynthesis I|GLYSYN-PWY|Glycine Biosynthesis|GLYCINE-SYN|1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=GLYSYN-PWY
diphthamide biosynthesis|PWY-6482|||0.6|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6482
hypusine biosynthesis|PWY-5905|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5905
inosine-5'-phosphate biosynthesis II|PWY-6124|Inosine-5'-phosphate Biosynthesis|IMP-Biosynthesis|0.4|0.4|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6124
adenosine nucleotides de novo biosynthesis|PWY-6126|Purine Nucleotides De Novo Biosynthesis|Purine-Nucleotide-De-Novo-Biosynthesis|2.625|0.875|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6126
5-aminoimidazole ribonucleotide biosynthesis I|PWY-6121|5-Aminoimidazole Ribonucleotide Biosynthesis|AIR-Biosynthesis|1.0|0.6|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6121
guanine and guanosine salvage I|PWY-6620|Guanine and Guanosine Salvage|Guanine-Guanosine-Salvage|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6620
guanine and guanosine salvage II|PWY-6599|Guanine and Guanosine Salvage|Guanine-Guanosine-Salvage|0.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6599
adenine and adenosine salvage III|PWY-6609|Adenine and Adenosine Salvage|Adenine-Adenosine-Salvage|1.25|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6609
adenine and adenosine salvage I|P121-PWY|Adenine and Adenosine Salvage|Adenine-Adenosine-Salvage|1.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=P121-PWY
xanthine and xanthosine salvage|SALVPURINE2-PWY|Purine Nucleotide Salvage|Purine-Nucleotides-Salvage|1.5|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=SALVPURINE2-PWY
UTP and CTP de novo biosynthesis|PWY-7176|||1.3333334|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7176
UMP biosynthesis|PWY-5686|||0.33333334|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5686
CMP phosphorylation|PWY-7205|||1.5|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7205
pyrimidine ribonucleosides salvage I|PWY-7193|||0.6666667|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7193
pyrimidine nucleobases salvage I|PWY-7183|||2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7183
myo-inositol biosynthesis|PWY-2301|||0.5|0.5|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-2301
D-myo-inositol (1,4,5)-trisphosphate biosynthesis|PWY-6351|||2.6|0.8|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6351
D-myo-inositol-5-phosphate metabolism|PWY-6367|||1.75|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6367
D-myo-inositol (1,4,5)-trisphosphate degradation|PWY-6363|||0.33333334|0.33333334|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6363
mevalonate pathway I|PWY-922|||0.5714286|0.42857143|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-922
PRPP biosynthesis I|PWY0-662|PRPP Biosynthesis|PRPP-Biosynthesis|2.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY0-662
eumelanin biosynthesis|PWY-6498|||0.16666667|0.16666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6498
2-methylbutyrate biosynthesis|PWY-5109|||0.8|0.4|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5109
dolichyl-diphosphooligosaccharide biosynthesis|MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS|||0.2|0.2|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
heparan sulfate biosynthesis (late stages)|PWY-6558|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6558
glycoaminoglycan-protein linkage region biosynthesis|PWY-6557|||0.25|0.25|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6557
glycogen biosynthesis II (from UDP-D-Glucose)|PWY-5067|Glucogen and Starch Biosynthesis|GLYCOGEN-BIOSYN|0.6|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5067
GDP-mannose biosynthesis|PWY-5659|GDP Mannose Biosynthesis|GDP-Mannose-Biosynthesis|1.25|0.5|1|55|PWY-WAS-NOT-DELETED|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-5659
GDP-L-fucose biosynthesis I (from GDP-D-mannose)|PWY-66|||1.5|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-66
UDP-D-xylose and UDP-D-glucuronate biosynthesis|PWY-4821|||1.0|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-4821
gluconeogenesis III|PWY66-399|Gluconeogenesis|Gluconeogenesis|0.84615386|0.84615386|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY66-399
glycogen degradation I|GLYCOCAT-PWY|Glycogen Degradation|Glycogen-Degradation|0.85714287|0.5714286|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=GLYCOCAT-PWY
pyrimidine deoxyribonucleotides dephosphorylation|PWY-7206|||0.6666667|0.6666667|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7206
pyrimidine deoxyribonucleotides de novo biosynthesis I|PWY-7184|Pyrimidine Deoxyribonucleotides De Novo Biosynthesis|Pyrimid-Deoxyribonucleot-De-Novo-Biosyn|0.5555556|0.5555556|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7184
pyrimidine deoxyribonucleotides biosynthesis from CTP|PWY-7210|||0.625|0.625|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7210
pyrimidine deoxyribonucleotide phosphorylation|PWY-7197|||1.0|0.75|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-7197
phospholipases|LIPASYN-PWY|||2.2|0.6|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=LIPASYN-PWY
tRNA methylation (yeast)|PWY-6829|||0.21428572|0.21428572|1|85|HAS-ALL-KEY-REACTIONS|http://biocyc.org/META/new-image?type=PATHWAY&object=PWY-6829
tRNA charging|TRNA-CHARGING-PWY|||1.9|1.0|1|95|COMPLETE-PATHWAY-NOT-SUBSET-VARIANT|http://biocyc.org/META/new-image?type=PATHWAY&object=TRNA-CHARGING-PWY