FASTA searches a protein or DNA sequence data bank
version 3.3t08 Jan. 17, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
./fasta/H_para.glimmer.tab.seq.01726: 144 aa
>orf01861 orf01861 undefined product 1772340:1772774 forward MW:16259
vs UNIPROT_BACTERIA library
searching /data/blastdb/uniprot_bacteria 0 library
639146251 residues in 2035238 sequences
statistics extrapolated from 60000 to 2035062 sequences
Expectation_n fit: rho(ln(x))= 6.0952+/-0.000237; mu= -2.2025+/- 0.014
mean_var=66.5892+/-15.252, 0's: 30 Z-trim: 1 B-trim: 0 in 0/59
Lambda= 0.1572
FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)xS] ktup: 2
join: 36, opt: 24, gap-pen: -12/ -2, width: 16
Scan time: 129.916
The best scores are: opt z-sc E(2035062)
Q3EFQ1.1 Q3EFQ1_ACTSC Cell wall-associated hydrol ( 144) 922 1145.4 1.1e-55 LINK:Q3EFQ1
A1EMW3.1 A1EMW3_VIBCH CrcB protein domain protein ( 144) 865 1075.6 8.5e-52 LINK:A1EMW3
A1EK35.1 A1EK35_VIBCH 50S ribosomal protein L4 (P ( 144) 863 1073.1 1.2e-51 LINK:A1EK35
A1F6C7.1 A1F6C7_VIBCH Cell wall-associated hydrol ( 144) 863 1073.1 1.2e-51 LINK:A1F6C7
Q8CME1.1 Q8CME1_VIBVU Cell wall-associated hydrol ( 144) 861 1070.7 1.6e-51 LINK:Q8CME1
A1ER41.1 A1ER41_VIBCH Uracil-DNA glycosylase (EC ( 124) 784 977.5 2.5e-46 LINK:A1ER41
Q2SKW9.1 Q2SKW9_HAHCH Hypothetical protein. ( 122) 713 890.6 1.7e-41 LINK:Q2SKW9
Q1YII0.1 Q1YII0_9RHIZ Hypothetical protein. ( 152) 713 888.9 2.1e-41 LINK:Q1YII0
A1ES18.1 A1ES18_VIBCH TRNA (Uracil-5-)-methyltran ( 111) 672 841.0 9.9e-39 LINK:A1ES18
Q68XF8.1 Q68XF8_RICTY Hypothetical protein. ( 138) 651 813.7 3.3e-37 LINK:Q68XF8
Q4HIX7.1 Q4HIX7_CAMLA Cell wall-associated hydrol ( 122) 627 785.2 1.3e-35 LINK:Q4HIX7
Q2VBT8.1 Q2VBT8_9BACT Hypothetical protein. ( 132) 615 769.9 9.1e-35 LINK:Q2VBT8
Q9PLI5.2 Y114_CHLMU Hypothetical protein TC_0114. ( 122) 598 749.6 1.2e-33 LINK:Q9PLI5
Q1NYX4.1 Q1NYX4_9FLAO Cell wall-associated hydrol ( 132) 567 711.1 1.7e-31 LINK:Q1NYX4
Q3I0L2.1 Q3I0L2_HAEPR Hypothetical protein (Fragm ( 79) 501 634.0 3.4e-27 LINK:Q3I0L2
Q848X1.1 Q848X1_BACME Hypothetical protein. ( 105) 493 622.1 1.6e-26 LINK:Q848X1
Q4EFZ9.1 Q4EFZ9_LISMO Hypothetical protein. ( 105) 462 584.1 2e-24 LINK:Q4EFZ9
Q4IZ52.1 Q4IZ52_AZOVI Cell wall-associated hydrol ( 43) 298 389.8 1.4e-13 LINK:Q4IZ52
A1ELH4.1 A1ELH4_VIBCH Alanine racemase 1 (EC 5.1. ( 49) 285 372.9 1.2e-12 LINK:A1ELH4
Q9HW59.1 Q9HW59_PSEAE Probable amidase. ( 494) 118 151.0 2.7 LINK:Q9HW59
Q02H99.1 Q02H99_PSEAB Putative amidase. ( 494) 118 151.0 2.7 LINK:Q02H99
Q2M5P7.1 Q2M5P7_PSEPU Hypothetical protein. ( 485) 117 149.9 3.1 LINK:Q2M5P7
Q0BBI6.1 Q0BBI6_BURCM L-carnitine dehydratase/bil ( 401) 115 148.9 3.6 LINK:Q0BBI6
Q2CCJ8.1 Q2CCJ8_9RHOB ATP-dependent RNA helicase ( 477) 116 148.8 3.6 LINK:Q2CCJ8
A0TJR7.1 A0TJR7_9BURK L-carnitine dehydratase/bil ( 401) 113 146.4 4.9 LINK:A0TJR7
>>Q3EFQ1.1 Q3EFQ1_ACTSC Cell wall-associated hydrolase. (144 aa)
initn: 922 init1: 922 opt: 922 Z-score: 1145.4 bits: 217.9 E(): 1.1e-55
Smith-Waterman score: 922; 95.105% identity (95.105% ungapped) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::::: : :::::::::::::: :::::::::::::.:::.:::::::::::::::::
Q3EFQ1 MLSALISPACSYPAMRLATQPEHQGCVHSGPLVLGAAPFNSPAPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Q3EFQ1 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::::::.::::::::::::.::.
Q3EFQ1 DHYDLLSHLLDLSVSQLSLLLPLR
130 140
>>A1EMW3.1 A1EMW3_VIBCH CrcB protein domain protein. (144 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1075.6 bits: 204.9 E(): 8.5e-52
Smith-Waterman score: 865; 89.583% identity (89.583% ungapped) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::::.: ::: ::::::::::: ::::::::::::.: :::::::::::::::::::
A1EMW3 MLSALINSELSYRAMRLATQPEHQMFVHSGPLVLGAAPFNLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::.:::
A1EMW3 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::::::.::. : :::: :.:::
A1EMW3 DHYDLLSHLLEPSFSQLSGLMPLH
130 140
>>A1EK35.1 A1EK35_VIBCH 50S ribosomal protein L4 (Prolip (144 aa)
initn: 863 init1: 863 opt: 863 Z-score: 1073.1 bits: 204.5 E(): 1.2e-51
Smith-Waterman score: 863; 89.583% identity (89.583% ungapped) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::::.: ::: ::::::::::: ::::::::::::.: :::::::::::::::::::
A1EK35 MLSALINSELSYRAMRLATQPEHQRFVHSGPLVLGAAPFNLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::.:::
A1EK35 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::::::.::. : :::: :.:::
A1EK35 DHYDLLSHLLEPSFSQLSGLMPLH
130 140
>>A1F6C7.1 A1F6C7_VIBCH Cell wall-associated hydrolase. (144 aa)
initn: 863 init1: 863 opt: 863 Z-score: 1073.1 bits: 204.5 E(): 1.2e-51
Smith-Waterman score: 863; 89.583% identity (89.583% ungapped) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::::.: ::: ::::::::::: ::::::::::::.: :::::::::::::::::::
A1F6C7 MLSALINSELSYRAMRLATQPEHQRFVHSGPLVLGAAPFNLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::.:::
A1F6C7 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::::::.::. : :::: :.:::
A1F6C7 DHYDLLSHLLEPSFSQLSGLMPLH
130 140
>>Q8CME1.1 Q8CME1_VIBVU Cell wall-associated hydrolase. (144 aa)
initn: 861 init1: 861 opt: 861 Z-score: 1070.7 bits: 204.0 E(): 1.6e-51
Smith-Waterman score: 861; 89.583% identity (89.583% ungapped) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::.:.: ::: ::::::::::: ::::::::::::.: :::::::::::::::::::
Q8CME1 MLSAVIDSELSYRAMRLATQPEHQRFVHSGPLVLGAAPFNLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
Q8CME1 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::::::.::. : :::: :.:::
Q8CME1 DHYDLLSHLLEPSFSQLSGLMPLH
130 140
>>A1ER41.1 A1ER41_VIBCH Uracil-DNA glycosylase (EC 3.2.2 (124 aa)
initn: 784 init1: 784 opt: 784 Z-score: 977.5 bits: 186.6 E(): 2.5e-46
Smith-Waterman score: 784; 92.742% identity (92.742% ungapped) in 124 aa overlap (1-124:1-124)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::::.: ::: ::::::::::: ::::::::::::.: :::::::::::::::::::
A1ER41 MLSALINSELSYRAMRLATQPEHQRFVHSGPLVLGAAPFNLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::.:::
A1ER41 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
::::
A1ER41 DHYD
>>Q2SKW9.1 Q2SKW9_HAHCH Hypothetical protein. (122 aa)
initn: 713 init1: 713 opt: 713 Z-score: 890.6 bits: 170.5 E(): 1.7e-41
Smith-Waterman score: 713; 86.885% identity (86.885% ungapped) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::.: : :: :::::.::::: ::::::::::. ..::: ::::::::::::::::
Q2SKW9 MLSAVIPSERSYRAMRLASQPEHQRFVHSGPLVLGATLLKSPTSTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: :::::::::::::::::: :::::::::::::::::::::::.:::
Q2SKW9 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRCELLGGISLLSPEYLLSVERWPFHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
::
Q2SKW9 DH
>>Q1YII0.1 Q1YII0_9RHIZ Hypothetical protein. (152 aa)
initn: 710 init1: 710 opt: 713 Z-score: 888.9 bits: 170.5 E(): 2.1e-41
Smith-Waterman score: 713; 75.000% identity (75.000% ungapped) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
: ::.: .. ::::.::: : :: :. ::::::. :.:::.:::::::::::::.:::
Q1YII0 MPSAVIPTVHSYPALRLAPQQVHQRYVQPGPLVLGSDPVNSPAPTADRDRTVSRRSEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::.: :::: :::::::::.::::::::. ::: ::: :::::: :::::::::::. ::
Q1YII0 RTALIGEQPNPWDLLQPQDAMSRHRGAKQPRRYGLLGVISLLSPAYLLSVERWPFHAGPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::: :: :::::::: . :.:::
Q1YII0 DHYDRLSSLLDLSVSQSGGLMPLHSTTDFRPV
130 140 150
>>A1ES18.1 A1ES18_VIBCH TRNA (Uracil-5-)-methyltransfera (111 aa)
initn: 672 init1: 672 opt: 672 Z-score: 841.0 bits: 161.2 E(): 9.9e-39
Smith-Waterman score: 672; 92.793% identity (92.793% ungapped) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::::.: ::: ::::::::::: ::::::::::::.: :::::::::::::::::::
A1ES18 MLSALINSELSYRAMRLATQPEHQRFVHSGPLVLGAAPFNLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::::::::::::: :::::::::::::::::::::::::::::::::::::
A1ES18 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVE
70 80 90 100 110
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
>>Q68XF8.1 Q68XF8_RICTY Hypothetical protein. (138 aa)
initn: 647 init1: 647 opt: 651 Z-score: 813.7 bits: 156.4 E(): 3.3e-37
Smith-Waterman score: 651; 77.206% identity (77.206% ungapped) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
: ::.: :.:::::. :: : :: :: ::::: : :.. :::::::::::::::::::
Q68XF8 MHSAVIPSVLSYPAVPLARQLVHQGYVHLGPLVLKADPLKLPTPTADRDRTVSRRSKPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
:::: :::: ::::::::::::::::::. ::: : :::::::::: :::::::: ::
Q68XF8 RTTLIGEQPNPWDLLQPQDVMSRHRGAKRFRRYGRLEIISLLSPEYLLFVERWPFHSGPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
:::: :: :: :: ::
Q68XF8 DHYDRLSSLLVLSDSQSG
130
>>Q4HIX7.1 Q4HIX7_CAMLA Cell wall-associated hydrolase, (122 aa)
initn: 627 init1: 627 opt: 627 Z-score: 785.2 bits: 151.0 E(): 1.3e-35
Smith-Waterman score: 627; 77.869% identity (77.869% ungapped) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::.: : ::: :: :: : ::: :. ::::::. .: ::::::::::::::.:::
Q4HIX7 MLSAFIRSKLSYAAMLLAEQQLHQWFVQPGPLVLGSNLFNLLTPTADRDRTVSRRSEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::.::::::::::::::::.:::::::: :: :::: :::::: :::: ::::::.:::
Q4HIX7 RTALNGEQPYPWDLLQPQDAMSRHRGAKPPRRCELLGEISLLSPGYLLSFERWPFHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
::
Q4HIX7 DH
>>Q2VBT8.1 Q2VBT8_9BACT Hypothetical protein. (132 aa)
initn: 615 init1: 615 opt: 615 Z-score: 769.9 bits: 148.2 E(): 9.1e-35
Smith-Waterman score: 615; 73.485% identity (73.485% ungapped) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
:::::: : :: :: :: : : :. ::::: . :.. .::.::::::::::.:::
Q2VBT8 MLSALILSRRSYSAMLLAEQQIDQRSVQLGPLVLESDPLKFLAPTTDRDRTVSRRSEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
:.:: :::: :::::::::: ::::::: ::::::: :::::: :::: ::::::.:::
Q2VBT8 RATLMGEQPNPWDLLQPQDVTSRHRGAKPPRRYELLGEISLLSPAYLLSFERWPFHAEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
::: :::::.::
Q2VBT8 DHYALLSYLIDL
130
>>Q9PLI5.2 Y114_CHLMU Hypothetical protein TC_0114. (122 aa)
initn: 598 init1: 598 opt: 598 Z-score: 749.6 bits: 144.4 E(): 1.2e-33
Smith-Waterman score: 598; 74.590% identity (74.590% ungapped) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::: :: : ::: :: :: :: :.: :::::::::.::.. :.:: :::.::::: .:::
Q9PLI5 MLSMLILSELSYSAMLLAKQPTHHWFVHSGPLVLGTAPLKYPAPTKDRDQTVSRRFEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::.: :::: :::::::::.:::::::: :::::: .::::::::::::.: :: ::
Q9PLI5 RTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLLSPEYLLSVKRRRFHFPPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
::
Q9PLI5 DH
>>Q1NYX4.1 Q1NYX4_9FLAO Cell wall-associated hydrolase. (132 aa)
initn: 567 init1: 567 opt: 567 Z-score: 711.1 bits: 137.4 E(): 1.7e-31
Smith-Waterman score: 567; 68.939% identity (68.939% ungapped) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
:::.:: : :: :..:: : .: :. ::::: :.. : . ::::::::::.:::
Q1NYX4 MLSVLILSEHSYSALHLAIQLIYQRFVQPGPLVLELDPLKLLTLAIDRDRTVSRRSEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
:.:: :::: :::::::::: ::::::. :: :::: :::::::::: :::: :.:::
Q1NYX4 RATLMGEQPNPWDLLQPQDVTSRHRGAEPPRRCELLGETSLLSPEYLLSFERWPSHTEPP
70 80 90 100 110 120
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
::: :::::.::
Q1NYX4 DHYALLSYLFDL
130
>>Q3I0L2.1 Q3I0L2_HAEPR Hypothetical protein (Fragment). (79 aa)
initn: 501 init1: 501 opt: 501 Z-score: 634.0 bits: 122.4 E(): 3.4e-27
Smith-Waterman score: 501; 97.368% identity (97.368% ungapped) in 76 aa overlap (37-112:4-79)
10 20 30 40 50 60
orf018 SSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSSRTTLNG
::.::::::::: :::::::::::::::::
Q3I0L2 ACCAPLNSPTPTADRXRTVSRRSKPSSRTTLNG
10 20 30
70 80 90 100 110 120
orf018 EQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPPDHYDLL
::::::::::::::::::::::::::::::::::::::::::::::
Q3I0L2 EQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVER
40 50 60 70
130 140
orf018 SYLLDLSVSQLSLLIPLH
>>Q848X1.1 Q848X1_BACME Hypothetical protein. (105 aa)
initn: 493 init1: 493 opt: 493 Z-score: 622.1 bits: 120.6 E(): 1.6e-26
Smith-Waterman score: 493; 75.000% identity (75.000% ungapped) in 104 aa overlap (1-104:1-104)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
:::::: :. ::::: :: : :: ::: ::::: .::.. ::::.::::::::::.:::
Q848X1 MLSALIPSTHSYPAMPLARQLVHQRCVHPGPLVLRTAPLKFPTPTTDRDRTVSRRSEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
::.: :::: ::: :::::.:::::::: :: ::: ::::::
Q848X1 RTALMGEQPNPWDRLQPQDAMSRHRGAKPPRRCGLLGEISLLSPG
70 80 90 100
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
>>Q4EFZ9.1 Q4EFZ9_LISMO Hypothetical protein. (105 aa)
initn: 462 init1: 462 opt: 462 Z-score: 584.1 bits: 113.5 E(): 2e-24
Smith-Waterman score: 462; 69.231% identity (69.231% ungapped) in 104 aa overlap (1-104:1-104)
10 20 30 40 50 60
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSS
::::.: .. ::::: :: : :: ::: ::::: .::.. :.:..::::::::::.:::
Q4EFZ9 MLSAFIPATHSYPAMLLAEQLVHQRCVHPGPLVLRTAPLKFPAPATDRDRTVSRRSEPSS
10 20 30 40 50 60
70 80 90 100 110 120
orf018 RTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP
:..: :::: ::: :::::. ::::::: :: ::: ::::::
Q4EFZ9 RAALMGEQPNPWDRLQPQDATSRHRGAKPPRRCGLLGEISLLSPG
70 80 90 100
130 140
orf018 DHYDLLSYLLDLSVSQLSLLIPLH
>>Q4IZ52.1 Q4IZ52_AZOVI Cell wall-associated hydrolase. (43 aa)
initn: 297 init1: 297 opt: 298 Z-score: 389.8 bits: 76.3 E(): 1.4e-13
Smith-Waterman score: 298; 95.349% identity (95.349% ungapped) in 43 aa overlap (80-122:1-43)
50 60 70 80 90 100
orf018 RTVSRRSKPSSRTTLNGEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLS
.:::::::::::::::::::::::::::::
Q4IZ52 MMSRHRGAKHRRRYELLGGISLLSPEYLLS
10 20 30
110 120 130 140
orf018 VERWPFHSEPPDHYDLLSYLLDLSVSQLSLLIPLH
:::::::.:::::
Q4IZ52 VERWPFHTEPPDH
40
>>A1ELH4.1 A1ELH4_VIBCH Alanine racemase 1 (EC 5.1.1.1). (49 aa)
initn: 282 init1: 282 opt: 285 Z-score: 372.9 bits: 73.4 E(): 1.2e-12
Smith-Waterman score: 285; 83.673% identity (83.673% ungapped) in 49 aa overlap (96-144:1-49)
70 80 90 100 110 120
orf018 GEQPYPWDLLQPQDVMSRHRGAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPPDHYDL
.::::::::::::::::::::.::::::::
A1ELH4 MGGISLLSPEYLLSVERWPFHTEPPDHYDL
10 20 30
130 140
orf018 LSYLLDLSVSQLSLLIPLH
::.::. : :::: :.:::
A1ELH4 LSHLLEPSFSQLSGLMPLH
40
>>Q9HW59.1 Q9HW59_PSEAE Probable amidase. (494 aa)
initn: 89 init1: 89 opt: 118 Z-score: 151.0 bits: 35.6 E(): 2.7
Smith-Waterman score: 118; 31.818% identity (33.333% ungapped) in 88 aa overlap (13-97:343-429)
10 20 30 40
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPI-NS
:: :. .:: :: :.:: : :::: . .
Q9HW59 PDYPLERLWRTWLVHRQWLVQGSLGELYADPARRVRLKPEAQWEVESG-LGLGAAEVYRA
320 330 340 350 360 370
50 60 70 80 90
orf018 PTPTADRDRTVSRRSKPSSRTTLNGEQPYPWD--LLQPQDVMSRHRGAKHRRRYELLGGI
.: :...: . . : . : .:.: :..: .: . :: ..:
Q9HW59 SLDRSDWYRALARLFERYDFLLLPSAQVFPFDAETAWPRQVAGRPMDTYHRWMEVVIGPT
380 390 400 410 420 430
100 110 120 130 140
orf018 SLLSPEYLLSVERWPFHSEPPDHYDLLSYLLDLSVSQLSLLIPLH
Q9HW59 LAGLPAISVPIGFGAAGLPMGLQIIGPAQADLAVLQLAHAHEGLTRWVSRRPPAMLEAPG
440 450 460 470 480 490
>>Q02H99.1 Q02H99_PSEAB Putative amidase. (494 aa)
initn: 89 init1: 89 opt: 118 Z-score: 151.0 bits: 35.6 E(): 2.7
Smith-Waterman score: 118; 31.818% identity (33.333% ungapped) in 88 aa overlap (13-97:343-429)
10 20 30 40
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPI-NS
:: :. .:: :: :.:: : :::: . .
Q02H99 PDYPLERLWRTWLVHRQWLVQGSLGELYADPARRVRLKPEAQWEVESG-LGLGAAEVYRA
320 330 340 350 360 370
50 60 70 80 90
orf018 PTPTADRDRTVSRRSKPSSRTTLNGEQPYPWD--LLQPQDVMSRHRGAKHRRRYELLGGI
.: :...: . . : . : .:.: :..: .: . :: ..:
Q02H99 SLDRSDWYRALARLFERYDFLLLPSAQVFPFDAETAWPRQVAGRPMDTYHRWMEVVIGPT
380 390 400 410 420 430
100 110 120 130 140
orf018 SLLSPEYLLSVERWPFHSEPPDHYDLLSYLLDLSVSQLSLLIPLH
Q02H99 LAGLPAISVPIGFGAAGLPMGLQIIGPAQADLAVLQLAHAHEGLTRWVSRRPPAMLEAPG
440 450 460 470 480 490
>>Q2M5P7.1 Q2M5P7_PSEPU Hypothetical protein. (485 aa)
initn: 88 init1: 88 opt: 117 Z-score: 149.9 bits: 35.4 E(): 3.1
Smith-Waterman score: 117; 28.723% identity (29.348% ungapped) in 94 aa overlap (6-97:331-424)
10 20 30
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLG
.:.: . :: : .:: :: :..: . .
Q2M5P7 CRVEACQPAFDLARLWQCWLTHRHFLVHGNLSAAYADPARRTLLKPEAQWEVEGGLQLSA
310 320 330 340 350 360
40 50 60 70 80 90
orf018 AAPINSPTPTADRDRTVSRRSKPSSRTTLNGEQPYPWD--LLQPQDVMSRHRGAKHRRRY
:: .. .: :.... . . : . : .:.: : :: : .: . ::
Q2M5P7 AALYQASLDRSDWYRAMAELFEHHDFLLLPSAQVFPFDAGLPWPQRVGGRPMDTYHRWME
370 380 390 400 410 420
100 110 120 130 140
orf018 ELLGGISLLSPEYLLSVERWPFHSEPPDHYDLLSYLLDLSVSQLSLLIPLH
..:
Q2M5P7 VVIGPTLAGLPSMSVPIGFNPGGLPMGLQIIGPAQADHAVLQLAYAHEQLTGWVQRCPPP
430 440 450 460 470 480
>>Q0BBI6.1 Q0BBI6_BURCM L-carnitine dehydratase/bile aci (401 aa)
initn: 70 init1: 70 opt: 115 Z-score: 148.9 bits: 34.9 E(): 3.6
Smith-Waterman score: 115; 27.273% identity (29.670% ungapped) in 99 aa overlap (50-140:297-395)
20 30 40 50 60 70
orf018 QPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSSRTTLNGEQPYPWDLLQPQD
: ..:: . . ..:.: ..: .:
Q0BBI6 IERPDLAADERYRTNLGRSANRAELLPEIRRELARRPRATLLAALSGAGIPCGEVLGLHD
270 280 290 300 310 320
80 90 100 110 120 130
orf018 VMSRHR----GAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP----DHYDLLSYLLD
... .: : :. . . ::...:.: : .. : : .. :: : :.:. :
Q0BBI6 ALTSERATRAGLVTRQPHPVAGGVDVLAPPYRFDGARLPVRGAPPVLGADTDDVLGGWLG
330 340 350 360 370 380
140
orf018 LSVSQLSLLIPLH
::...:. :
Q0BBI6 LSTDELARLRADRIV
390 400
>>Q2CCJ8.1 Q2CCJ8_9RHOB ATP-dependent RNA helicase RhlE. (477 aa)
initn: 55 init1: 55 opt: 116 Z-score: 148.8 bits: 35.2 E(): 3.6
Smith-Waterman score: 116; 35.443% identity (42.424% ungapped) in 79 aa overlap (31-97:381-458)
10 20 30 40 50
orf018 MLSALISSALSYPAMRLATQPEHQWCVHSGPLVLGAAPINSPTPTAD-----RDRTVSRR
: .:::: :.: :.:. : :: .::
Q2CCJ8 RAMMISVPRDDKNLEAIERLIQTEIPRMDNPAKVGAAP-NAPEPAAEEAKPARTRTRTRR
360 370 380 390 400
60 70 80 90 100
orf018 SKPSSRTTLNGEQPYPWDLLQPQDV----MSRHRGAKHR---RRYELLGGISLLSPEYLL
::.. . . ::: : .. :: ::...: :. :..:
Q2CCJ8 EKPAAAPAETVEQPQPQTPAAAEESRGKSRSRPRGGERRKGEREAEVVGMGDDMPSFIAL
410 420 430 440 450 460
110 120 130 140
orf018 SVERWPFHSEPPDHYDLLSYLLDLSVSQLSLLIPLH
Q2CCJ8 SFAERRTG
470
>>A0TJR7.1 A0TJR7_9BURK L-carnitine dehydratase/bile aci (401 aa)
initn: 70 init1: 70 opt: 113 Z-score: 146.4 bits: 34.5 E(): 4.9
Smith-Waterman score: 113; 26.263% identity (28.571% ungapped) in 99 aa overlap (50-140:297-395)
20 30 40 50 60 70
orf018 QPEHQWCVHSGPLVLGAAPINSPTPTADRDRTVSRRSKPSSRTTLNGEQPYPWDLLQPQD
: ..:: . . ..:.: ..: .:
A0TJR7 IERPDLAADERYRTNLGRSANRAELLPELRRELARRPRATLLAALSGAGIPCGEVLGLHD
270 280 290 300 310 320
80 90 100 110 120 130
orf018 VMSRHR----GAKHRRRYELLGGISLLSPEYLLSVERWPFHSEPP----DHYDLLSYLLD
... .: : :. . . ::...:.: : .. : : .. :: : :.:. :
A0TJR7 ALTSERATRAGLVTRQPHPVAGGVDVLAPPYRFDGARLPVRGAPPVLGADTDDVLGGWLG
330 340 350 360 370 380
140
orf018 LSVSQLSLLIPLH
.:...:. :
A0TJR7 MSTDELARLRADRIV
390 400
144 residues in 1 query sequences
639146251 residues in 2035238 library sequences
Scomplib [33t08]
start: Thu Feb 8 00:41:04 2007 done: Thu Feb 8 00:43:23 2007
Scan time: 129.916 Display time: 0.034
Function used was FASTA [version 3.3t08 Jan. 17, 2001]