Chapter 3. The ACT Main Window

Table of Contents
Overview of the Comparison Window
The File Menu
The Graph Menus
The Display Menu
The Entries Menu
The Select Menu
The View Menu
The Goto Menu
The Edit Menu
The Create Menu
The Write Menu
The DNA Views
Comparison View
The Feature List
Graphs and Plots
Notes on Using The Mouse

This chapter describes the main viewing window of ACT. First is an overview of the window and a description of the three main window menus - File, Graphs (Top) and Graphs (Bottom). The other menus are accessible only from the pop-up menu in the view windows (see the section called Other Mouse Controlled Functions and the section called The Pop-up Menu for more).

Overview of the Comparison Window

The following images show a breakdown of the main ACT window taken from a screen shot.

Key:

  1. The File and Display menus for the main window (described later in this chapter).

  2. Buttons controlling the view. Currently the only button is the "lock" button which controls whether the two sequences should be scrolled together. When the button is off, the sequences can be scrolled independently.

  3. This a view of the subject sequence of the comparison. See the section called The DNA Views for more information on how to operate this part of the window. Note that all the menus apart from the File menu and the Display menus are accessed via a pop-up menu on the third mouse button. See the section called Other Mouse Controlled Functions and the section called The Pop-up Menu for more.

  4. This part of the window shows the comparison between the two sequences. See the section called Comparison View for more information.

  5. The query sequence of the comparison. See the section called The DNA Views for more.