uk.ac.sanger.psu.gfmerge.datacomp
Class GFMergeRegion

java.lang.Object
  |
  +--uk.ac.sanger.psu.gfmerge.datacomp.GFMergeRegion

public class GFMergeRegion
extends java.lang.Object

class which represents a cluster of overlapping features on a sequence.

Version:
1.0
Author:
Sebastian R. Spiegler

Field Summary
private  java.util.ArrayList locatable
          ArrayList of features objects (implementing LocateAble interface)
private  org.biojava.bio.symbol.Location location
          cluster location
 
Constructor Summary
GFMergeRegion(org.biojava.bio.symbol.Location _location, java.util.ArrayList _locateable)
          constructor of GFMergeRegion objects
 
Method Summary
 java.util.ArrayList getLocateable()
          accessor method which returns ArrayList of overlapping features in cluster
 org.biojava.bio.symbol.Location getLocation()
          accessor method which returns location of the cluster
private  void setLocateable(java.util.ArrayList _locateable)
          accessor method which sets ArrayList of overlapping features in cluster
private  void setLocation(org.biojava.bio.symbol.Location _location)
          accessor method which sets location of the cluster
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

location

private org.biojava.bio.symbol.Location location
cluster location


locatable

private java.util.ArrayList locatable
ArrayList of features objects (implementing LocateAble interface)

Constructor Detail

GFMergeRegion

public GFMergeRegion(org.biojava.bio.symbol.Location _location,
                     java.util.ArrayList _locateable)
constructor of GFMergeRegion objects

Parameters:
_location - location of the cluster
_locateable - overlapping features within the cluster
Method Detail

getLocation

public org.biojava.bio.symbol.Location getLocation()
accessor method which returns location of the cluster

Returns:
location of the cluster

setLocation

private void setLocation(org.biojava.bio.symbol.Location _location)
accessor method which sets location of the cluster

Parameters:
_location - location of the cluster

getLocateable

public java.util.ArrayList getLocateable()
accessor method which returns ArrayList of overlapping features in cluster

Returns:
ArrayList of overlapping features in cluster

setLocateable

private void setLocateable(java.util.ArrayList _locateable)
accessor method which sets ArrayList of overlapping features in cluster

Parameters:
_locateable - ArrayList of overlapping features in cluster