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java.lang.Object | +--uk.ac.sanger.psu.gfmerge.datacomp.FeatureComponent
abstract class which contains the basic implementation of gene components (Intron, Exon).
Exon
,
Intron
Field Summary | |
private GFMergeFeature |
gfmFeature
reference to genemodel |
private org.biojava.bio.symbol.Location |
location
Location of genemodel component |
Constructor Summary | |
FeatureComponent(GFMergeFeature _gfmFeature,
org.biojava.bio.symbol.Location _location)
constructor which contains the basic implementation for genemodel components |
Method Summary | |
GFMergeFeature |
getGfmFeature()
accessor method which returns reference to genemodel |
long |
getLength()
method which returns length of genemodel component |
org.biojava.bio.symbol.Location |
getLocation()
accessor method which returns Location of genemodel component |
private void |
setGfmFeature(GFMergeFeature _gfmFeature)
accessor method which sets reference to genemodel genemodel component belongs to |
private void |
setLocation(org.biojava.bio.symbol.Location _location)
accessor method which sets Location of genemodel component |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
private org.biojava.bio.symbol.Location location
private GFMergeFeature gfmFeature
Constructor Detail |
public FeatureComponent(GFMergeFeature _gfmFeature, org.biojava.bio.symbol.Location _location)
_gfmFeature
- genemodel_location
- Location of genemodel componentMethod Detail |
public org.biojava.bio.symbol.Location getLocation()
getLocation
in interface LocateAble
public GFMergeFeature getGfmFeature()
getGfmFeature
in interface FeatureComponentAble
public long getLength()
getLength
in interface FeatureComponentAble
private void setLocation(org.biojava.bio.symbol.Location _location)
_location
- Location of genemodel componentprivate void setGfmFeature(GFMergeFeature _gfmFeature)
_gfmFeature
- reference to genemodel
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