Class Summary |
Exon |
class Exon is representing an biological exon which is a sublocation of a feature. |
ExonType |
This typesafe enumeration construct replaces primitive constants
with a set of static final object references encapsulated in this class
that restricts further instantiation. |
FeatureComponent |
abstract class which contains the basic implementation of gene components (Intron, Exon). |
GeneModel |
class is representing a genemodel. |
GenePredicter |
class is representing a geneprediction program (its prediction). |
GFMergeFeature |
abstract class which contains basic implementation of genemodels, blast and cDNA features. |
GFMergeRegion |
class which represents a cluster of overlapping features on a sequence. |
Intron |
class Intron is representing an biological intron which is the Location inbetween two sublocation of a feature. |
Prediction |
class Prediction is wrapping a BioJava sequence object. |
RecordGmCDna |
class which represents a data record. |
SimFeature |
class is representing a similarity feature used as evidence for correct predictions. |