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Hierarchy For All Packages
Package Hierarchies:
uk.ac.sanger.psu.gfmerge
,
uk.ac.sanger.psu.gfmerge.analysis
,
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis
,
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools
,
uk.ac.sanger.psu.gfmerge.analysis.tools
,
uk.ac.sanger.psu.gfmerge.datacomp
,
uk.ac.sanger.psu.gfmerge.util
,
uk.ac.sanger.psu.gfmerge.util.algotools
,
uk.ac.sanger.psu.gfmerge.util.biotools
,
uk.ac.sanger.psu.gfmerge.util.debug
,
uk.ac.sanger.psu.gfmerge.util.getopt
,
uk.ac.sanger.psu.gfmerge.util.io
Class Hierarchy
class java.lang.Object
class java.util.AbstractMap (implements java.util.Map)
class java.util.TreeMap (implements java.lang.Cloneable, java.io.Serializable, java.util.SortedMap)
class uk.ac.sanger.psu.gfmerge.util.algotools.
MyTreeMap
(implements java.util.SortedMap)
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
AvgCondProbAnalysisTools
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
BasicFeatureAnalysis
(implements uk.ac.sanger.psu.gfmerge.analysis.
BasicFeatureAnalysisAble
)
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
AvgCondProbAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
FeatureAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
CDnaSpliceSiteAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
FeatureOverlapAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
BlastOverlapAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
CDnaOverlapAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
GeneModelLengthAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
TotalExonLengthAnalysis
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
BasicFeatureAnalysisTools
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
CDnaSpliceSiteAnalysisTools
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
FeatureOverlapAnalysisTools
class uk.ac.sanger.psu.gfmerge.util.biotools.
BioTools
class uk.ac.sanger.psu.gfmerge.util.debug.
Debug
class uk.ac.sanger.psu.gfmerge.datacomp.
ExonType
class uk.ac.sanger.psu.gfmerge.datacomp.
FeatureComponent
(implements uk.ac.sanger.psu.gfmerge.datacomp.
FeatureComponentAble
)
class uk.ac.sanger.psu.gfmerge.datacomp.
Exon
(implements uk.ac.sanger.psu.gfmerge.datacomp.
ExonAble
)
class uk.ac.sanger.psu.gfmerge.datacomp.
Intron
(implements uk.ac.sanger.psu.gfmerge.datacomp.
IntronAble
)
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
GeneModelLengthAnalysisTools
class uk.ac.sanger.psu.gfmerge.datacomp.
GenePredicter
class uk.ac.sanger.psu.gfmerge.util.getopt.
GetOpt
class uk.ac.sanger.psu.gfmerge.
GFMerge
class uk.ac.sanger.psu.gfmerge.analysis.
GFMerge_Analysis
class uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeFeature
(implements uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeFeatureAble
)
class uk.ac.sanger.psu.gfmerge.datacomp.
GeneModel
(implements uk.ac.sanger.psu.gfmerge.datacomp.
GeneModelAble
)
class uk.ac.sanger.psu.gfmerge.datacomp.
SimFeature
class uk.ac.sanger.psu.gfmerge.util.io.
GFMergeInput
class uk.ac.sanger.psu.gfmerge.util.io.
GFMergeOutput
class uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeRegion
class uk.ac.sanger.psu.gfmerge.analysis.tools.
HighScoringPath
class uk.ac.sanger.psu.gfmerge.util.
PredAccuracy
class uk.ac.sanger.psu.gfmerge.datacomp.
Prediction
(implements uk.ac.sanger.psu.gfmerge.datacomp.
PredictionAble
)
class uk.ac.sanger.psu.gfmerge.datacomp.
RecordGmCDna
class uk.ac.sanger.psu.gfmerge.analysis.tools.
SavScoreInBioFeat
class uk.ac.sanger.psu.gfmerge.util.getopt.
SimpleArg
class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
TotalExonLengthAnalysisTools
Interface Hierarchy
interface uk.ac.sanger.psu.gfmerge.analysis.
BasicFeatureAnalysisAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
LocateAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
FeatureComponentAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
ExonAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
IntronAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeFeatureAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
GeneModelAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
StrandAble
interface uk.ac.sanger.psu.gfmerge.datacomp.
PredictionAble
Overview
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