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java.lang.Object | +--uk.ac.sanger.psu.gfmerge.datacomp.GFMergeRegion
class which represents a cluster of overlapping features on a sequence.
Field Summary | |
private java.util.ArrayList |
locatable
ArrayList of features objects (implementing LocateAble interface) |
private org.biojava.bio.symbol.Location |
location
cluster location |
Constructor Summary | |
GFMergeRegion(org.biojava.bio.symbol.Location _location,
java.util.ArrayList _locateable)
constructor of GFMergeRegion objects |
Method Summary | |
java.util.ArrayList |
getLocateable()
accessor method which returns ArrayList of overlapping features in cluster |
org.biojava.bio.symbol.Location |
getLocation()
accessor method which returns location of the cluster |
private void |
setLocateable(java.util.ArrayList _locateable)
accessor method which sets ArrayList of overlapping features in cluster |
private void |
setLocation(org.biojava.bio.symbol.Location _location)
accessor method which sets location of the cluster |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
private org.biojava.bio.symbol.Location location
private java.util.ArrayList locatable
Constructor Detail |
public GFMergeRegion(org.biojava.bio.symbol.Location _location, java.util.ArrayList _locateable)
_location
- location of the cluster_locateable
- overlapping features within the clusterMethod Detail |
public org.biojava.bio.symbol.Location getLocation()
private void setLocation(org.biojava.bio.symbol.Location _location)
_location
- location of the clusterpublic java.util.ArrayList getLocateable()
private void setLocateable(java.util.ArrayList _locateable)
_locateable
- ArrayList of overlapping features in cluster
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