Package uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis

Class Summary
AvgCondProbAnalysis Analysis class which calculates the high scoring path in a clustered sequence using the average conditional probability
BasicFeatureAnalysis abstract class from which feature analysis class are derived
BlastOverlapAnalysis Analysis class which calculates the high scoring path in a clustered sequence using the Blast overlap on the exon level
CDnaOverlapAnalysis Analysis class which calculates the high scoring path in a clustered sequence using the cDNA overlap on the exon level
CDnaSpliceSiteAnalysis Analysis class which calculates the high scoring path in a clustered sequence using a cDNA splice sites scoring system
FeatureAnalysis Abstract class which contains partial implementation of derived analysis classes
FeatureOverlapAnalysis Abstract class which contains partial implementation of derived overlap analysis classes
GeneModelLengthAnalysis Analysis class which calculates the high scoring path in a clustered sequence using the genemodel length (exon + intron length) as a scoring system
TotalExonLengthAnalysis Analysis class which calculates the high scoring path in a clustered sequence using the accumulated exon length as a scoring system