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java.lang.Object | +--uk.ac.sanger.psu.gfmerge.datacomp.RecordGmCDna
class which represents a data record.
It is used as value item in a treemap while doing cDNA splice site analysis. It contains matching boundaries (either start or end positions) of genemodels and cDNAs in order to calculate a cDNA splice site score later on by comparing the genemodel boundary to the cDNA boundary splice site matches.
CDnaSpliceSiteAnalysis
,
CDnaSpliceSiteAnalysisTools
Field Summary | |
java.util.ArrayList |
cDnaBoundaries
splice site of a cDNA feature (either start or end position) |
java.lang.Integer |
gmBoundary
splice site of a genemodel exon (either start or end position) |
Constructor Summary | |
RecordGmCDna()
constructor of RecordGmCDna objects. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
public java.lang.Integer gmBoundary
public java.util.ArrayList cDnaBoundaries
Constructor Detail |
public RecordGmCDna()
After initialzation the genemodel boundary attribute is null and the cDNA boundary ArrayList is empty.
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