uk.ac.sanger.psu.gfmerge.util.debug
Class Debug_
java.lang.Object
|
+--uk.ac.sanger.psu.gfmerge.util.debug.Debug_
- public class Debug_
- extends java.lang.Object
Method Summary |
static void |
debug_10(int debug,
SimpleArg allArguments)
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static void |
debug_11_1(int debug,
java.util.ArrayList gPredicter)
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static void |
debug_11_2(int debug,
java.lang.String gPredictionName,
java.lang.String fName)
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static void |
debug_11_3(int debug,
java.util.ArrayList predictions)
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static void |
debug_12(int debug,
java.lang.String calledByClass,
MyTreeMap tMap)
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static void |
debug_13(int debug,
java.util.ArrayList arrListOfRegions,
MyTreeMap tMap)
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static void |
debug_14(int debug,
java.util.ArrayList arrListOfRegions,
MyTreeMap tMap)
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static void |
debug_15_1(int debug,
java.util.ArrayList arrListOfGMRegions,
java.util.HashMap hashGmRegion)
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static void |
debug_15_2(int debug,
java.util.ArrayList arrListOfBlastRegions,
java.util.HashMap hashBlastRegion)
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static void |
debug_16(int debug,
java.lang.String calledByClass,
MyTreeMap tMap)
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static void |
debug_17(int debug,
java.util.ArrayList arrListOfRegions,
MyTreeMap tMap)
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static void |
debug_18(int debug,
java.util.ArrayList arrListOfBlastRegions,
java.util.HashMap hashBlastRegion)
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static void |
debug_20(int debug,
java.util.HashMap thisHashEqualGms)
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static void |
debug_21(int debug,
java.util.HashMap thisHashOfOverlappedGms)
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static void |
debug_22(int debug,
java.util.HashMap thishashExonOverlap)
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static void |
debug_23(int debug,
java.util.HashMap thisHashExonOverlap,
java.util.HashMap thisHashExonOverlapSubLocs,
java.util.HashMap thisHashExonOverlapLength)
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static void |
debug_24(int debug,
java.util.HashMap thisHashExonOverlap,
java.util.HashMap thisHashExonOverlapSubLocs,
java.util.HashMap thisHashExonOverlapLength,
java.util.HashMap thisHashGmScore,
java.util.HashMap thisHashEqualGms)
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static void |
debug_25(int debug,
java.util.ArrayList thisGmScoreTreeForRegionsArr,
java.util.HashMap hashGmScore)
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static void |
debug_26(int debug,
java.util.ArrayList thisRegionsOfPickedGmsArr,
java.util.HashMap thisHashGmScore)
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static void |
debug_27(int debug)
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static void |
debug_28(int debug,
java.util.HashMap cDNAScoredGMs)
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Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Debug_
public Debug_()
debug_10
public static void debug_10(int debug,
SimpleArg allArguments)
debug_11_1
public static void debug_11_1(int debug,
java.util.ArrayList gPredicter)
debug_11_2
public static void debug_11_2(int debug,
java.lang.String gPredictionName,
java.lang.String fName)
debug_11_3
public static void debug_11_3(int debug,
java.util.ArrayList predictions)
debug_12
public static void debug_12(int debug,
java.lang.String calledByClass,
MyTreeMap tMap)
debug_13
public static void debug_13(int debug,
java.util.ArrayList arrListOfRegions,
MyTreeMap tMap)
debug_14
public static void debug_14(int debug,
java.util.ArrayList arrListOfRegions,
MyTreeMap tMap)
debug_15_1
public static void debug_15_1(int debug,
java.util.ArrayList arrListOfGMRegions,
java.util.HashMap hashGmRegion)
debug_15_2
public static void debug_15_2(int debug,
java.util.ArrayList arrListOfBlastRegions,
java.util.HashMap hashBlastRegion)
debug_16
public static void debug_16(int debug,
java.lang.String calledByClass,
MyTreeMap tMap)
debug_17
public static void debug_17(int debug,
java.util.ArrayList arrListOfRegions,
MyTreeMap tMap)
debug_18
public static void debug_18(int debug,
java.util.ArrayList arrListOfBlastRegions,
java.util.HashMap hashBlastRegion)
debug_20
public static void debug_20(int debug,
java.util.HashMap thisHashEqualGms)
debug_21
public static void debug_21(int debug,
java.util.HashMap thisHashOfOverlappedGms)
debug_22
public static void debug_22(int debug,
java.util.HashMap thishashExonOverlap)
debug_23
public static void debug_23(int debug,
java.util.HashMap thisHashExonOverlap,
java.util.HashMap thisHashExonOverlapSubLocs,
java.util.HashMap thisHashExonOverlapLength)
debug_24
public static void debug_24(int debug,
java.util.HashMap thisHashExonOverlap,
java.util.HashMap thisHashExonOverlapSubLocs,
java.util.HashMap thisHashExonOverlapLength,
java.util.HashMap thisHashGmScore,
java.util.HashMap thisHashEqualGms)
debug_25
public static void debug_25(int debug,
java.util.ArrayList thisGmScoreTreeForRegionsArr,
java.util.HashMap hashGmScore)
debug_26
public static void debug_26(int debug,
java.util.ArrayList thisRegionsOfPickedGmsArr,
java.util.HashMap thisHashGmScore)
debug_27
public static void debug_27(int debug)
debug_28
public static void debug_28(int debug,
java.util.HashMap cDNAScoredGMs)