uk.ac.sanger.psu.gfmerge.datacomp
Class RecordGmCDna

java.lang.Object
  |
  +--uk.ac.sanger.psu.gfmerge.datacomp.RecordGmCDna

public class RecordGmCDna
extends java.lang.Object

class which represents a data record.

It is used as value item in a treemap while doing cDNA splice site analysis. It contains matching boundaries (either start or end positions) of genemodels and cDNAs in order to calculate a cDNA splice site score later on by comparing the genemodel boundary to the cDNA boundary splice site matches.

Version:
1.0
Author:
Sebastian R. Spiegler
See Also:
CDnaSpliceSiteAnalysis, CDnaSpliceSiteAnalysisTools

Field Summary
 java.util.ArrayList cDnaBoundaries
          splice site of a cDNA feature (either start or end position)
 java.lang.Integer gmBoundary
          splice site of a genemodel exon (either start or end position)
 
Constructor Summary
RecordGmCDna()
          constructor of RecordGmCDna objects.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

gmBoundary

public java.lang.Integer gmBoundary
splice site of a genemodel exon (either start or end position)


cDnaBoundaries

public java.util.ArrayList cDnaBoundaries
splice site of a cDNA feature (either start or end position)

Constructor Detail

RecordGmCDna

public RecordGmCDna()
constructor of RecordGmCDna objects.

After initialzation the genemodel boundary attribute is null and the cDNA boundary ArrayList is empty.