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java.lang.Object | +--uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.BasicFeatureAnalysis | +--uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.FeatureAnalysis | +--uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.FeatureOverlapAnalysis
Abstract class which contains partial implementation of derived overlap analysis classes
Field Summary | |
private SimpleArg |
allArguments
SimpleArg object which contains all command line arguments |
private java.util.ArrayList |
arrListOfFeatRegions
ArrayList of SimFeature regions |
private java.util.ArrayList |
arrListOfGMRegions
ArrayList of genemodel regions |
Constructor Summary | |
FeatureOverlapAnalysis(java.util.ArrayList _arrListOfGMRegions,
java.util.ArrayList _arrListOfFeatRegions,
SimpleArg _allArguments)
constructor of abstract FeatureOverlapAnalysis class, contains partial implementation of constructors of derived overlap analysis classes |
Methods inherited from class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.FeatureAnalysis |
getArrListOfFeatRegions |
Methods inherited from class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.BasicFeatureAnalysis |
getAllArguments, getArrListOfGMRegions, getClassName, getHighScoringGmRegArr |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
private java.util.ArrayList arrListOfGMRegions
private java.util.ArrayList arrListOfFeatRegions
private SimpleArg allArguments
Constructor Detail |
public FeatureOverlapAnalysis(java.util.ArrayList _arrListOfGMRegions, java.util.ArrayList _arrListOfFeatRegions, SimpleArg _allArguments)
_arrListOfGMRegions
- ArrayList of genemodel regions_arrListOfFeatRegions
- ArrayList of SimFeature regions_allArguments
- SimpleArg object which contains all command
line arguments
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