Package uk.ac.sanger.psu.gfmerge.datacomp

Interface Summary
ExonAble interface for exons.
FeatureComponentAble interface for gene components
GeneModelAble interface for GeneModel.
GFMergeFeatureAble interface for GFMergeFeature objects
IntronAble interface introns.
LocateAble interface for objects which contain a Location.
PredictionAble interface for prediction objects
StrandAble interface for objects containing strand information (genemodel, Blast, cDNA).
 

Class Summary
Exon class Exon is representing an biological exon which is a sublocation of a feature.
ExonType This typesafe enumeration construct replaces primitive constants with a set of static final object references encapsulated in this class that restricts further instantiation.
FeatureComponent abstract class which contains the basic implementation of gene components (Intron, Exon).
GeneModel class is representing a genemodel.
GenePredicter class is representing a geneprediction program (its prediction).
GFMergeFeature abstract class which contains basic implementation of genemodels, blast and cDNA features.
GFMergeRegion class which represents a cluster of overlapping features on a sequence.
Intron class Intron is representing an biological intron which is the Location inbetween two sublocation of a feature.
Prediction class Prediction is wrapping a BioJava sequence object.
RecordGmCDna class which represents a data record.
SimFeature class is representing a similarity feature used as evidence for correct predictions.