Class Summary |
AvgCondProbAnalysis |
Analysis class which calculates the high scoring path in a clustered sequence using the average conditional probability |
BasicFeatureAnalysis |
abstract class from which feature analysis class are derived |
BlastOverlapAnalysis |
Analysis class which calculates the high scoring path in a clustered sequence using the Blast overlap on the exon level |
CDnaOverlapAnalysis |
Analysis class which calculates the high scoring path in a clustered sequence using the cDNA overlap on the exon level |
CDnaSpliceSiteAnalysis |
Analysis class which calculates the high scoring path in a clustered sequence using a cDNA splice sites scoring system |
FeatureAnalysis |
Abstract class which contains partial implementation of derived analysis classes |
FeatureOverlapAnalysis |
Abstract class which contains partial implementation of derived overlap analysis classes |
GeneModelLengthAnalysis |
Analysis class which calculates the high scoring path in a clustered sequence using the genemodel length (exon + intron length) as a scoring system |
TotalExonLengthAnalysis |
Analysis class which calculates the high scoring path in a clustered sequence using the accumulated exon length as a scoring system |