uk.ac.sanger.psu.gfmerge.datacomp
Class SimFeature

java.lang.Object
  |
  +--uk.ac.sanger.psu.gfmerge.datacomp.GFMergeFeature
        |
        +--uk.ac.sanger.psu.gfmerge.datacomp.SimFeature
All Implemented Interfaces:
GFMergeFeatureAble, LocateAble

public class SimFeature
extends GFMergeFeature

class is representing a similarity feature used as evidence for correct predictions.

This class wraps the BioJava Feature class and contains feature hits. Those hits are either a Blast or a cDNA feature. For example:

 SimFeature simFeature = new SimFeature(feature);
 

Version:
1.0
Author:
Sebastian R. Spiegler
See Also:
GeneModel, LocateAble

Field Summary
 
Fields inherited from class uk.ac.sanger.psu.gfmerge.datacomp.GFMergeFeature
 
Constructor Summary
SimFeature(org.biojava.bio.seq.StrandedFeature feature)
          constructor for SimFeature objects
 
Methods inherited from class uk.ac.sanger.psu.gfmerge.datacomp.GFMergeFeature
getExons, getFeature, getIntrons, getLength, getLocation, getStrand, getTotalExonLength
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SimFeature

public SimFeature(org.biojava.bio.seq.StrandedFeature feature)
constructor for SimFeature objects

Parameters:
feature - BioJava feature object