uk.ac.sanger.psu.gfmerge.util.debug
Class Debug_

java.lang.Object
  |
  +--uk.ac.sanger.psu.gfmerge.util.debug.Debug_

public class Debug_
extends java.lang.Object


Constructor Summary
Debug_()
           
 
Method Summary
static void debug_10(int debug, SimpleArg allArguments)
           
static void debug_11_1(int debug, java.util.ArrayList gPredicter)
           
static void debug_11_2(int debug, java.lang.String gPredictionName, java.lang.String fName)
           
static void debug_11_3(int debug, java.util.ArrayList predictions)
           
static void debug_12(int debug, java.lang.String calledByClass, MyTreeMap tMap)
           
static void debug_13(int debug, java.util.ArrayList arrListOfRegions, MyTreeMap tMap)
           
static void debug_14(int debug, java.util.ArrayList arrListOfRegions, MyTreeMap tMap)
           
static void debug_15_1(int debug, java.util.ArrayList arrListOfGMRegions, java.util.HashMap hashGmRegion)
           
static void debug_15_2(int debug, java.util.ArrayList arrListOfBlastRegions, java.util.HashMap hashBlastRegion)
           
static void debug_16(int debug, java.lang.String calledByClass, MyTreeMap tMap)
           
static void debug_17(int debug, java.util.ArrayList arrListOfRegions, MyTreeMap tMap)
           
static void debug_18(int debug, java.util.ArrayList arrListOfBlastRegions, java.util.HashMap hashBlastRegion)
           
static void debug_20(int debug, java.util.HashMap thisHashEqualGms)
           
static void debug_21(int debug, java.util.HashMap thisHashOfOverlappedGms)
           
static void debug_22(int debug, java.util.HashMap thishashExonOverlap)
           
static void debug_23(int debug, java.util.HashMap thisHashExonOverlap, java.util.HashMap thisHashExonOverlapSubLocs, java.util.HashMap thisHashExonOverlapLength)
           
static void debug_24(int debug, java.util.HashMap thisHashExonOverlap, java.util.HashMap thisHashExonOverlapSubLocs, java.util.HashMap thisHashExonOverlapLength, java.util.HashMap thisHashGmScore, java.util.HashMap thisHashEqualGms)
           
static void debug_25(int debug, java.util.ArrayList thisGmScoreTreeForRegionsArr, java.util.HashMap hashGmScore)
           
static void debug_26(int debug, java.util.ArrayList thisRegionsOfPickedGmsArr, java.util.HashMap thisHashGmScore)
           
static void debug_27(int debug)
           
static void debug_28(int debug, java.util.HashMap cDNAScoredGMs)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Debug_

public Debug_()
Method Detail

debug_10

public static void debug_10(int debug,
                            SimpleArg allArguments)

debug_11_1

public static void debug_11_1(int debug,
                              java.util.ArrayList gPredicter)

debug_11_2

public static void debug_11_2(int debug,
                              java.lang.String gPredictionName,
                              java.lang.String fName)

debug_11_3

public static void debug_11_3(int debug,
                              java.util.ArrayList predictions)

debug_12

public static void debug_12(int debug,
                            java.lang.String calledByClass,
                            MyTreeMap tMap)

debug_13

public static void debug_13(int debug,
                            java.util.ArrayList arrListOfRegions,
                            MyTreeMap tMap)

debug_14

public static void debug_14(int debug,
                            java.util.ArrayList arrListOfRegions,
                            MyTreeMap tMap)

debug_15_1

public static void debug_15_1(int debug,
                              java.util.ArrayList arrListOfGMRegions,
                              java.util.HashMap hashGmRegion)

debug_15_2

public static void debug_15_2(int debug,
                              java.util.ArrayList arrListOfBlastRegions,
                              java.util.HashMap hashBlastRegion)

debug_16

public static void debug_16(int debug,
                            java.lang.String calledByClass,
                            MyTreeMap tMap)

debug_17

public static void debug_17(int debug,
                            java.util.ArrayList arrListOfRegions,
                            MyTreeMap tMap)

debug_18

public static void debug_18(int debug,
                            java.util.ArrayList arrListOfBlastRegions,
                            java.util.HashMap hashBlastRegion)

debug_20

public static void debug_20(int debug,
                            java.util.HashMap thisHashEqualGms)

debug_21

public static void debug_21(int debug,
                            java.util.HashMap thisHashOfOverlappedGms)

debug_22

public static void debug_22(int debug,
                            java.util.HashMap thishashExonOverlap)

debug_23

public static void debug_23(int debug,
                            java.util.HashMap thisHashExonOverlap,
                            java.util.HashMap thisHashExonOverlapSubLocs,
                            java.util.HashMap thisHashExonOverlapLength)

debug_24

public static void debug_24(int debug,
                            java.util.HashMap thisHashExonOverlap,
                            java.util.HashMap thisHashExonOverlapSubLocs,
                            java.util.HashMap thisHashExonOverlapLength,
                            java.util.HashMap thisHashGmScore,
                            java.util.HashMap thisHashEqualGms)

debug_25

public static void debug_25(int debug,
                            java.util.ArrayList thisGmScoreTreeForRegionsArr,
                            java.util.HashMap hashGmScore)

debug_26

public static void debug_26(int debug,
                            java.util.ArrayList thisRegionsOfPickedGmsArr,
                            java.util.HashMap thisHashGmScore)

debug_27

public static void debug_27(int debug)

debug_28

public static void debug_28(int debug,
                            java.util.HashMap cDNAScoredGMs)