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java.lang.Object | +--uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.GeneModelLengthAnalysisTools
class which contains computing tools for CDnaSpliceSiteAnalysis.
Constructor Summary | |
GeneModelLengthAnalysisTools()
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Method Summary | |
static java.util.HashMap |
getGmLengthScoredGmHash(int debug,
java.util.ArrayList _arrListOfGMRegions)
method which returns HashMap of genemodels pointing to their score using genemodel length (intron + exon length) as scoring system. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public GeneModelLengthAnalysisTools()
Method Detail |
public static java.util.HashMap getGmLengthScoredGmHash(int debug, java.util.ArrayList _arrListOfGMRegions)
debug
- debugging mode_arrListOfGMRegions
- ArrayList of genemodel regions
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