uk.ac.sanger.psu.gfmerge.analysis
Interface BasicFeatureAnalysisAble

All Known Implementing Classes:
AvgCondProbAnalysis, BasicFeatureAnalysis, BlastOverlapAnalysis, CDnaOverlapAnalysis, CDnaSpliceSiteAnalysis, FeatureAnalysis, FeatureOverlapAnalysis, GeneModelLengthAnalysis, TotalExonLengthAnalysis

public interface BasicFeatureAnalysisAble

interface for all feature analysis classes

Version:
1.0
Author:
Sebastian R. Spiegler

Method Summary
 java.lang.String getClassName()
          stub for method which returns class name without package information
 java.util.ArrayList getHighScoringGmRegArr(java.util.ArrayList _arrListOfGMRegionsToAnalyze)
          stub for method which returns high scoring path of genemodels on the sequence
 

Method Detail

getHighScoringGmRegArr

java.util.ArrayList getHighScoringGmRegArr(java.util.ArrayList _arrListOfGMRegionsToAnalyze)
stub for method which returns high scoring path of genemodels on the sequence

Parameters:
_arrListOfGMRegionsToAnalyze - ArrayList of genemodel regions
Returns:
ArrayList of regions with high scoring genemodels

getClassName

java.lang.String getClassName()
stub for method which returns class name without package information

Returns:
class name without package information