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java.lang.Objectuk.ac.sanger.psu.gfmerge.datacomp.FeatureComponent
uk.ac.sanger.psu.gfmerge.datacomp.Exon
public class Exon
class Exon is representing an biological exon which is a sublocation of a feature.
For example:
Exon exon = new Exon(geneModel, location);
Exon
,
FeatureComponent
,
ExonAble
Field Summary | |
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private ExonType |
exonType
typesafe enumeration of the Exon type |
Constructor Summary | |
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Exon(GFMergeFeature _gfmFeature,
org.biojava.bio.symbol.Location _location)
constructor for Exon object |
Method Summary | |
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ExonType |
getExonType()
accessor method which return exon type |
int |
getFrame()
method which returns frame of the exon. |
private void |
setExonType()
accessor method which sets exon type. |
Methods inherited from class uk.ac.sanger.psu.gfmerge.datacomp.FeatureComponent |
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getGfmFeature, getLength, getLocation |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface uk.ac.sanger.psu.gfmerge.datacomp.FeatureComponentAble |
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getGfmFeature, getLength |
Methods inherited from interface uk.ac.sanger.psu.gfmerge.datacomp.LocateAble |
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getLocation |
Field Detail |
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private ExonType exonType
Constructor Detail |
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public Exon(GFMergeFeature _gfmFeature, org.biojava.bio.symbol.Location _location)
_gfmFeature
- reference to genemodel exon belongs to_location
- Location of exonMethod Detail |
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public ExonType getExonType()
getExonType
in interface ExonAble
public int getFrame()
getFrame
in interface ExonAble
private void setExonType()
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