|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectuk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.BasicFeatureAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.TotalExonLengthAnalysis
public class TotalExonLengthAnalysis
Analysis class which calculates the high scoring path in a clustered sequence using the accumulated exon length as a scoring system
Constructor Summary | |
---|---|
TotalExonLengthAnalysis(java.util.ArrayList _arrListOfGMRegions,
SimpleArg _allArguments)
constructor for TotalExonLengthAnalysis objects |
Method Summary | |
---|---|
java.util.ArrayList |
getHighScoringGmRegArr(java.util.ArrayList _arrListOfGMRegionsToAnalyze)
method which returns the high scoring path of genemodels on a sequence using the accumulated exon length as a scoring system For further details consult the documentation. |
Methods inherited from class uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.BasicFeatureAnalysis |
---|
getAllArguments, getArrListOfGMRegions, getClassName |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
---|
public TotalExonLengthAnalysis(java.util.ArrayList _arrListOfGMRegions, SimpleArg _allArguments)
_arrListOfGMRegions
- ArrayList of genemodel regions_allArguments
- SimpleArg object which contains all command
line argumentsMethod Detail |
---|
public java.util.ArrayList getHighScoringGmRegArr(java.util.ArrayList _arrListOfGMRegionsToAnalyze)
getHighScoringGmRegArr
in interface BasicFeatureAnalysisAble
getHighScoringGmRegArr
in class BasicFeatureAnalysis
_arrListOfGMRegionsToAnalyze
- ArrayList of genemodel regions
|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |