uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis
Class FeatureOverlapAnalysis
java.lang.Object
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.BasicFeatureAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.FeatureAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.FeatureOverlapAnalysis
- All Implemented Interfaces:
- BasicFeatureAnalysisAble
- Direct Known Subclasses:
- BlastOverlapAnalysis, CDnaOverlapAnalysis
public abstract class FeatureOverlapAnalysis
- extends FeatureAnalysis
Abstract class which contains partial implementation of derived overlap analysis classes
- Version:
- 1.0
- Author:
- Sebastian R. Spiegler
Constructor Summary |
FeatureOverlapAnalysis(java.util.ArrayList _arrListOfGMRegions,
java.util.ArrayList _arrListOfFeatRegions,
SimpleArg _allArguments)
constructor of abstract FeatureOverlapAnalysis class, contains partial implementation of constructors of derived overlap analysis classes |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
arrListOfGMRegions
private java.util.ArrayList arrListOfGMRegions
- ArrayList of genemodel regions
arrListOfFeatRegions
private java.util.ArrayList arrListOfFeatRegions
- ArrayList of SimFeature regions
allArguments
private SimpleArg allArguments
- SimpleArg object which contains all command line arguments
FeatureOverlapAnalysis
public FeatureOverlapAnalysis(java.util.ArrayList _arrListOfGMRegions,
java.util.ArrayList _arrListOfFeatRegions,
SimpleArg _allArguments)
- constructor of abstract FeatureOverlapAnalysis class, contains partial implementation of constructors of derived overlap analysis classes
- Parameters:
_arrListOfGMRegions
- ArrayList of genemodel regions_arrListOfFeatRegions
- ArrayList of SimFeature regions_allArguments
- SimpleArg object which contains all command
line arguments