uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools
Class GeneModelLengthAnalysisTools

java.lang.Object
  extended by uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.GeneModelLengthAnalysisTools

public class GeneModelLengthAnalysisTools
extends java.lang.Object

class which contains computing tools for CDnaSpliceSiteAnalysis.

Version:
1.0
Author:
Sebastian R. Spiegler

Constructor Summary
GeneModelLengthAnalysisTools()
           
 
Method Summary
static java.util.HashMap getGmLengthScoredGmHash(int debug, java.util.ArrayList _arrListOfGMRegions)
          method which returns HashMap of genemodels pointing to their score using genemodel length (intron + exon length) as scoring system.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GeneModelLengthAnalysisTools

public GeneModelLengthAnalysisTools()
Method Detail

getGmLengthScoredGmHash

public static java.util.HashMap getGmLengthScoredGmHash(int debug,
                                                        java.util.ArrayList _arrListOfGMRegions)
method which returns HashMap of genemodels pointing to their score using genemodel length (intron + exon length) as scoring system.

Parameters:
debug - debugging mode
_arrListOfGMRegions - ArrayList of genemodel regions
Returns:
HashMap of genemodels pointing to their genemodel length score