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Index
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Hierarchy For All Packages
Package Hierarchies:
uk.ac.sanger.psu.gfmerge
,
uk.ac.sanger.psu.gfmerge.analysis
,
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis
,
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools
,
uk.ac.sanger.psu.gfmerge.analysis.tools
,
uk.ac.sanger.psu.gfmerge.datacomp
,
uk.ac.sanger.psu.gfmerge.util
,
uk.ac.sanger.psu.gfmerge.util.algotools
,
uk.ac.sanger.psu.gfmerge.util.biotools
,
uk.ac.sanger.psu.gfmerge.util.debug
,
uk.ac.sanger.psu.gfmerge.util.getopt
,
uk.ac.sanger.psu.gfmerge.util.io
Class Hierarchy
java.lang.Object
java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.io.Serializable, java.util.SortedMap<K,V>)
uk.ac.sanger.psu.gfmerge.util.algotools.
MyTreeMap
(implements java.util.SortedMap<K,V>)
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
AvgCondProbAnalysisTools
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
BasicFeatureAnalysis
(implements uk.ac.sanger.psu.gfmerge.analysis.
BasicFeatureAnalysisAble
)
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
AvgCondProbAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
FeatureAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
CDnaSpliceSiteAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
FeatureOverlapAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
BlastOverlapAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
CDnaOverlapAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
GeneModelLengthAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.
TotalExonLengthAnalysis
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
BasicFeatureAnalysisTools
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
CDnaSpliceSiteAnalysisTools
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
FeatureOverlapAnalysisTools
uk.ac.sanger.psu.gfmerge.util.biotools.
BioTools
uk.ac.sanger.psu.gfmerge.util.debug.
Debug
uk.ac.sanger.psu.gfmerge.datacomp.
ExonType
uk.ac.sanger.psu.gfmerge.datacomp.
FeatureComponent
(implements uk.ac.sanger.psu.gfmerge.datacomp.
FeatureComponentAble
)
uk.ac.sanger.psu.gfmerge.datacomp.
Exon
(implements uk.ac.sanger.psu.gfmerge.datacomp.
ExonAble
)
uk.ac.sanger.psu.gfmerge.datacomp.
Intron
(implements uk.ac.sanger.psu.gfmerge.datacomp.
IntronAble
)
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
GeneModelLengthAnalysisTools
uk.ac.sanger.psu.gfmerge.datacomp.
GenePredicter
uk.ac.sanger.psu.gfmerge.util.getopt.
GetOpt
uk.ac.sanger.psu.gfmerge.
GFMerge
uk.ac.sanger.psu.gfmerge.analysis.
GFMerge_Analysis
uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeFeature
(implements uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeFeatureAble
)
uk.ac.sanger.psu.gfmerge.datacomp.
GeneModel
(implements uk.ac.sanger.psu.gfmerge.datacomp.
GeneModelAble
)
uk.ac.sanger.psu.gfmerge.datacomp.
SimFeature
uk.ac.sanger.psu.gfmerge.util.io.
GFMergeInput
uk.ac.sanger.psu.gfmerge.util.io.
GFMergeOutput
uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeRegion
uk.ac.sanger.psu.gfmerge.analysis.tools.
HighScoringPath
uk.ac.sanger.psu.gfmerge.util.
PredAccuracy
uk.ac.sanger.psu.gfmerge.datacomp.
Prediction
(implements uk.ac.sanger.psu.gfmerge.datacomp.
PredictionAble
)
uk.ac.sanger.psu.gfmerge.datacomp.
RecordGmCDna
uk.ac.sanger.psu.gfmerge.analysis.tools.
SavScoreInBioFeat
uk.ac.sanger.psu.gfmerge.util.getopt.
SimpleArg
uk.ac.sanger.psu.gfmerge.analysis.simfeature_analysis.tools.
TotalExonLengthAnalysisTools
Interface Hierarchy
uk.ac.sanger.psu.gfmerge.analysis.
BasicFeatureAnalysisAble
uk.ac.sanger.psu.gfmerge.datacomp.
LocateAble
uk.ac.sanger.psu.gfmerge.datacomp.
ExonAble
uk.ac.sanger.psu.gfmerge.datacomp.
FeatureComponentAble
uk.ac.sanger.psu.gfmerge.datacomp.
ExonAble
uk.ac.sanger.psu.gfmerge.datacomp.
IntronAble
uk.ac.sanger.psu.gfmerge.datacomp.
GeneModelAble
uk.ac.sanger.psu.gfmerge.datacomp.
GFMergeFeatureAble
uk.ac.sanger.psu.gfmerge.datacomp.
GeneModelAble
uk.ac.sanger.psu.gfmerge.datacomp.
IntronAble
uk.ac.sanger.psu.gfmerge.datacomp.
StrandAble
uk.ac.sanger.psu.gfmerge.datacomp.
PredictionAble
Overview
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