uk.ac.sanger.psu.gfmerge.datacomp
Class Intron

java.lang.Object
  extended by uk.ac.sanger.psu.gfmerge.datacomp.FeatureComponent
      extended by uk.ac.sanger.psu.gfmerge.datacomp.Intron
All Implemented Interfaces:
FeatureComponentAble, IntronAble, LocateAble

public class Intron
extends FeatureComponent
implements IntronAble

class Intron is representing an biological intron which is the Location inbetween two sublocation of a feature.

For example:

 Intron intron = new Intron(geneModel, location);
 

Version:
1.0
Author:
Sebastian R. Spiegler
See Also:
Exon, FeatureComponent, ExonAble

Constructor Summary
Intron(GFMergeFeature _gfmFeature, org.biojava.bio.symbol.Location _location)
          constructor for Intron objects
 
Method Summary
 
Methods inherited from class uk.ac.sanger.psu.gfmerge.datacomp.FeatureComponent
getGfmFeature, getLength, getLocation
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface uk.ac.sanger.psu.gfmerge.datacomp.FeatureComponentAble
getGfmFeature, getLength
 
Methods inherited from interface uk.ac.sanger.psu.gfmerge.datacomp.LocateAble
getLocation
 

Constructor Detail

Intron

public Intron(GFMergeFeature _gfmFeature,
              org.biojava.bio.symbol.Location _location)
constructor for Intron objects

Parameters:
_gfmFeature - Genemodel or SimFeature object (genemodel, cDNA, Blast)
_location - location on sequence