According to the specification in /nfs/users/nfs_s/ss34/annot/CFAC1/99_dist/../misc/new_gff_format.lua, a pseudogene feature - only contains allowed attributes (434 success/es) - contains a pseudogenic_transcript (434 success/es) - has only allowed child types (434 success/es) - appears as a root node (434 success/es) - contains all child features within its coordinates (434 success/es) a CDS feature - should not have children (9057 success/es) - appears as child of an mRNA (9057 success/es) - only contains allowed attributes (9057 success/es) a mRNA feature - agrees exactly with CDS/UTR coordinates of its children (9055 success/es) - only contains allowed attributes (9055 success/es) - has a coding sequence >= 3bp (9055 success/es) - has at least one CDS child (9055 success/es) - has only allowed child types (9055 success/es) - has non-partial CDS ending on a stop codon (9053 success/es) - has non-selenocysteine CDS with no internal stop codons (9055 success/es) - consists of less than 50% Ns (9055 success/es) - appears as part of a gene (9055 success/es) a tRNA feature - only contains allowed attributes (110 success/es) - should not have children (110 success/es) - appears as part of a gene (110 success/es) a snoRNA feature - only contains allowed attributes (14 success/es) - should not have children (14 success/es) - appears as part of a gene (14 success/es) a snRNA feature - only contains allowed attributes (2 success/es) - should not have children (2 success/es) - appears as part of a gene (2 success/es) a pseudogenic_transcript feature - only contains allowed attributes (434 success/es) - appears as part of a pseudogene (434 success/es) - has only allowed child types (434 success/es) - contains at least one pseudogenic_exon (434 success/es) a pseudogenic_exon feature - appears as part of a pseudogenic_transcript (435 success/es) - should not have children (435 success/es) - only contains allowed attributes (435 success/es) a gene feature - only contains allowed attributes (9185 success/es) - has consistent strands across all children (9185 success/es) - has only allowed child types (9185 success/es) - appears as a root node (9185 success/es) - contains all child features within its coordinates (9185 success/es) a rRNA feature - only contains allowed attributes (4 success/es) - should not have children (4 success/es) - appears as part of a gene (4 success/es) a polypeptide feature - agrees exactly with CDS of >=1 overlapping coding transcripts (9415 success/es) - only contains allowed attributes (9415 success/es) - has a required product attribute (9415 success/es) - overlaps the transcript it derives_from (9415 success/es) - must be derived_from a unique mRNA (9415 success/es) - appears as a root node (9415 success/es) Encountered 0 parser warning/s. Traversed 19208 CCs (11 feature types), checked 216680 nodes for 47 aspects. Finished in 5.919710 s.