Validation report with specification /nfs/users/nfs_s/ss34/annot-nf/data/speck/output_check.lua

• Features
  • contig
    • …appears as a root node successes 543 failures 0 runtime errors 0
    • …should not have children successes 543 failures 0 runtime errors 0
    • …only contains allowed attributes successes 543 failures 0 runtime errors 0
  • pseudogene
    • …has only allowed child types successes 245 failures 0 runtime errors 0
    • …has consistent strands across all children successes 245 failures 0 runtime errors 0
    • …only contains allowed attributes successes 0 failures 245 runtime errors 0
    • …contains a pseudogenic_transcript successes 245 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 245 failures 0 runtime errors 0
    • …appears as a root node successes 245 failures 0 runtime errors 0
    • …does not span more than one contig successes 245 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 11008 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 11008 failures 0 runtime errors 0
    • …only contains allowed attributes successes 11008 failures 0 runtime errors 0
  • gap
    • …appears as a root node successes 26 failures 0 runtime errors 0
    • …should not have children successes 26 failures 0 runtime errors 0
    • …only contains allowed attributes successes 26 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 0 failures 88 runtime errors 0
    • …should not have children successes 88 failures 0 runtime errors 0
    • …appears as part of a gene successes 88 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 0 failures 1 runtime errors 0
    • …should not have children successes 1 failures 0 runtime errors 0
    • …appears as part of a gene successes 1 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 0 failures 122 runtime errors 0
    • …should not have children successes 122 failures 0 runtime errors 0
    • …appears as part of a gene successes 122 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 0 failures 60 runtime errors 0
    • …should not have children successes 60 failures 0 runtime errors 0
    • …appears as part of a gene successes 60 failures 0 runtime errors 0
  • pseudogenic_transcript
    • …only contains allowed attributes successes 245 failures 0 runtime errors 0
    • …appears as part of a pseudogene successes 245 failures 0 runtime errors 0
    • …has only allowed child types successes 245 failures 0 runtime errors 0
    • …contains at least one pseudogenic_exon successes 245 failures 0 runtime errors 0
  • pseudogenic_exon
    • …appears as part of a pseudogenic_transcript successes 1083 failures 0 runtime errors 0
    • …should not have children successes 1083 failures 0 runtime errors 0
    • …only contains allowed attributes successes 1083 failures 0 runtime errors 0
  • gene
    • …does not overlap another protein coding gene successes 10969 failures 0 runtime errors 0
    • …appears as a root node successes 11240 failures 0 runtime errors 0
    • …only contains allowed attributes successes 4320 failures 6920 runtime errors 0
    • …has consistent strands across all children successes 11240 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 11240 failures 0 runtime errors 0
    • …has only allowed child types successes 11240 failures 0 runtime errors 0
    • …does not span more than one contig successes 11239 failures 1 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 10969 failures 0 runtime errors 0
    • …only contains allowed attributes successes 10969 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 10969 failures 0 runtime errors 0
    • …has at least one CDS child successes 10969 failures 0 runtime errors 0
    • …has only allowed child types successes 10969 failures 0 runtime errors 0
    • …has a protein product >= 10aa successes 10969 failures 0 runtime errors 0
    • …has non-partial CDS beginning with a start codon successes 10929 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 10934 failures 2 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 10969 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 10969 failures 0 runtime errors 0
    • …appears as part of a gene successes 10969 failures 0 runtime errors 0
  • polypeptide
    • …appears as a root node successes 11214 failures 0 runtime errors 0
    • …must be derived_from a unique mRNA successes 11214 failures 0 runtime errors 0
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 11214 failures 0 runtime errors 0
    • …only contains allowed attributes successes 1751 failures 9463 runtime errors 0
    • …has a required product attribute successes 11214 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 11214 failures 0 runtime errors 0
    • …has only allowed child types successes 5523 failures 0 runtime errors 0
    • …does not span more than one contig successes 11214 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings