Validation report with specification
/nfs/users/nfs_s/ss34/annot-nf/data/speck/output_check.lua
Features
contig
…appears as a root node
successes
543
failures
0
runtime errors
0
…should not have children
successes
543
failures
0
runtime errors
0
…only contains allowed attributes
successes
543
failures
0
runtime errors
0
pseudogene
…has only allowed child types
successes
245
failures
0
runtime errors
0
…has consistent strands across all children
successes
245
failures
0
runtime errors
0
…only contains allowed attributes
successes
0
failures
245
runtime errors
0
…contains a pseudogenic_transcript
successes
245
failures
0
runtime errors
0
…contains all child features within its coordinates
successes
245
failures
0
runtime errors
0
…appears as a root node
successes
245
failures
0
runtime errors
0
…does not span more than one contig
successes
245
failures
0
runtime errors
0
CDS
…should not have children
successes
11008
failures
0
runtime errors
0
…appears as child of an mRNA
successes
11008
failures
0
runtime errors
0
…only contains allowed attributes
successes
11008
failures
0
runtime errors
0
mRNA
…agrees exactly with CDS/UTR coordinates of its children
successes
10969
failures
0
runtime errors
0
…only contains allowed attributes
successes
10969
failures
0
runtime errors
0
…has a coding sequence >= 3bp
successes
10969
failures
0
runtime errors
0
…has at least one CDS child
successes
10969
failures
0
runtime errors
0
…has only allowed child types
successes
10969
failures
0
runtime errors
0
…has a protein product >= 10aa
successes
10969
failures
0
runtime errors
0
…has non-partial CDS beginning with a start codon
successes
10929
failures
0
runtime errors
0
…has non-partial CDS ending on a stop codon
successes
10934
failures
2
runtime errors
0
…has non-selenocysteine CDS with no internal stop codons
successes
10969
failures
0
runtime errors
0
…consists of less than 50% Ns
successes
10969
failures
0
runtime errors
0
…appears as part of a gene
successes
10969
failures
0
runtime errors
0
tRNA
…only contains allowed attributes
successes
0
failures
88
runtime errors
0
…should not have children
successes
88
failures
0
runtime errors
0
…appears as part of a gene
successes
88
failures
0
runtime errors
0
snoRNA
…only contains allowed attributes
successes
0
failures
122
runtime errors
0
…should not have children
successes
122
failures
0
runtime errors
0
…appears as part of a gene
successes
122
failures
0
runtime errors
0
snRNA
…only contains allowed attributes
successes
0
failures
1
runtime errors
0
…should not have children
successes
1
failures
0
runtime errors
0
…appears as part of a gene
successes
1
failures
0
runtime errors
0
pseudogenic_transcript
…only contains allowed attributes
successes
245
failures
0
runtime errors
0
…appears as part of a pseudogene
successes
245
failures
0
runtime errors
0
…has only allowed child types
successes
245
failures
0
runtime errors
0
…contains at least one pseudogenic_exon
successes
245
failures
0
runtime errors
0
pseudogenic_exon
…appears as part of a pseudogenic_transcript
successes
1083
failures
0
runtime errors
0
…should not have children
successes
1083
failures
0
runtime errors
0
…only contains allowed attributes
successes
1083
failures
0
runtime errors
0
gene
…does not overlap another protein coding gene
successes
10969
failures
0
runtime errors
0
…appears as a root node
successes
11239
failures
0
runtime errors
0
…only contains allowed attributes
successes
4319
failures
6920
runtime errors
0
…has consistent strands across all children
successes
11239
failures
0
runtime errors
0
…contains all child features within its coordinates
successes
11239
failures
0
runtime errors
0
…has only allowed child types
successes
11239
failures
0
runtime errors
0
…does not span more than one contig
successes
11239
failures
0
runtime errors
0
rRNA
…only contains allowed attributes
successes
0
failures
59
runtime errors
0
…should not have children
successes
59
failures
0
runtime errors
0
…appears as part of a gene
successes
59
failures
0
runtime errors
0
polypeptide
…appears as a root node
successes
11214
failures
0
runtime errors
0
…must be derived_from a unique mRNA
successes
11214
failures
0
runtime errors
0
…agrees exactly with CDS of >=1 overlapping coding transcripts
successes
11214
failures
0
runtime errors
0
…only contains allowed attributes
successes
1751
failures
9463
runtime errors
0
…has a required product attribute
successes
11214
failures
0
runtime errors
0
…overlaps the transcript it derives_from
successes
11214
failures
0
runtime errors
0
…has only allowed child types
successes
5523
failures
0
runtime errors
0
…does not span more than one contig
successes
11214
failures
0
runtime errors
0
Regions
Metadata
Comments
Sequences
Warnings