Validation report with specification /nfs/users/nfs_s/ss34/annot-nf/data/speck/output_check.lua

• Features
  • contig
    • …appears as a root node successes 1052 failures 0 runtime errors 0
    • …should not have children successes 1052 failures 0 runtime errors 0
    • …only contains allowed attributes successes 1052 failures 0 runtime errors 0
  • pseudogene
    • …has only allowed child types successes 5217 failures 0 runtime errors 0
    • …has consistent strands across all children successes 5217 failures 0 runtime errors 0
    • …only contains allowed attributes successes 0 failures 5217 runtime errors 0
    • …contains a pseudogenic_transcript successes 5217 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 5217 failures 0 runtime errors 0
    • …appears as a root node successes 5217 failures 0 runtime errors 0
    • …does not span more than one contig successes 5210 failures 7 runtime errors 0
  • CDS
    • …should not have children successes 14326 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 14326 failures 0 runtime errors 0
    • …only contains allowed attributes successes 14326 failures 0 runtime errors 0
  • gap
    • …appears as a root node successes 1005 failures 0 runtime errors 0
    • …should not have children successes 1005 failures 0 runtime errors 0
    • …only contains allowed attributes successes 1005 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 0 failures 71 runtime errors 0
    • …should not have children successes 71 failures 0 runtime errors 0
    • …appears as part of a gene successes 71 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 0 failures 4 runtime errors 0
    • …should not have children successes 4 failures 0 runtime errors 0
    • …appears as part of a gene successes 4 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 0 failures 36 runtime errors 0
    • …should not have children successes 36 failures 0 runtime errors 0
    • …appears as part of a gene successes 36 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 0 failures 609 runtime errors 0
    • …should not have children successes 609 failures 0 runtime errors 0
    • …appears as part of a gene successes 609 failures 0 runtime errors 0
  • pseudogenic_transcript
    • …only contains allowed attributes successes 5217 failures 0 runtime errors 0
    • …appears as part of a pseudogene successes 5217 failures 0 runtime errors 0
    • …has only allowed child types successes 5217 failures 0 runtime errors 0
    • …contains at least one pseudogenic_exon successes 5217 failures 0 runtime errors 0
  • pseudogenic_exon
    • …appears as part of a pseudogenic_transcript successes 35122 failures 0 runtime errors 0
    • …should not have children successes 35122 failures 0 runtime errors 0
    • …only contains allowed attributes successes 35122 failures 0 runtime errors 0
  • gene
    • …does not overlap another protein coding gene successes 13817 failures 0 runtime errors 0
    • …appears as a root node successes 14537 failures 0 runtime errors 0
    • …only contains allowed attributes successes 12685 failures 1852 runtime errors 0
    • …has consistent strands across all children successes 14537 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 14537 failures 0 runtime errors 0
    • …has only allowed child types successes 14537 failures 0 runtime errors 0
    • …does not span more than one contig successes 14491 failures 46 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 13817 failures 0 runtime errors 0
    • …only contains allowed attributes successes 13817 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 13817 failures 0 runtime errors 0
    • …has at least one CDS child successes 13817 failures 0 runtime errors 0
    • …has only allowed child types successes 13817 failures 0 runtime errors 0
    • …has a protein product >= 10aa successes 13816 failures 1 runtime errors 0
    • …has non-partial CDS beginning with a start codon successes 11741 failures 2076 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 13817 failures 0 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 13817 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 13817 failures 0 runtime errors 0
    • …appears as part of a gene successes 13817 failures 0 runtime errors 0
  • polypeptide
    • …appears as a root node successes 19034 failures 0 runtime errors 0
    • …must be derived_from a unique mRNA successes 19034 failures 0 runtime errors 0
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 19034 failures 0 runtime errors 0
    • …only contains allowed attributes successes 5318 failures 13716 runtime errors 0
    • …has a required product attribute successes 19034 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 19034 failures 0 runtime errors 0
    • …has only allowed child types successes 8047 failures 0 runtime errors 0
    • …does not span more than one contig successes 18983 failures 51 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings