Validation report with specification /nfs/users/nfs_s/ss34/annot/CFAC1_unassembled/99_dist/../misc/new_gff_format.lua

• Features
  • contig
    • …appears as a root node successes 427 failures 0 runtime errors 0
    • …should not have children successes 427 failures 0 runtime errors 0
    • …only contains allowed attributes successes 427 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 3470 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 3470 failures 0 runtime errors 0
    • …only contains allowed attributes successes 3470 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 32 failures 0 runtime errors 0
    • …should not have children successes 32 failures 0 runtime errors 0
    • …appears as part of a gene successes 32 failures 0 runtime errors 0
  • gene
    • …only contains allowed attributes successes 3478 failures 0 runtime errors 0
    • …has consistent strands across all children successes 3478 failures 0 runtime errors 0
    • …has only allowed child types successes 3478 failures 0 runtime errors 0
    • …appears as a root node successes 3478 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 3478 failures 0 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 3446 failures 0 runtime errors 0
    • …only contains allowed attributes successes 3446 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 3446 failures 0 runtime errors 0
    • …has at least one CDS child successes 3446 failures 0 runtime errors 0
    • …has only allowed child types successes 3446 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 3353 failures 0 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 3446 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 3446 failures 0 runtime errors 0
    • …appears as part of a gene successes 3446 failures 0 runtime errors 0
  • polypeptide
    • …must be derived_from a unique mRNA successes 3446 failures 0 runtime errors 0
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 3446 failures 0 runtime errors 0
    • …only contains allowed attributes successes 3446 failures 0 runtime errors 0
    • …has a required product attribute successes 3446 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 3446 failures 0 runtime errors 0
    • …has only allowed child types successes 2430 failures 0 runtime errors 0
    • …appears as a root node successes 3446 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings