Validation report with specification /nfs/users/nfs_s/ss34/annot/skel/misc/new_gff_format.lua

• Features
  • contig
    • …appears as a root node successes 3935 failures 0 runtime errors 0
    • …should not have children successes 3935 failures 0 runtime errors 0
    • …only contains allowed attributes successes 3935 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 9272 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 9272 failures 0 runtime errors 0
    • …only contains allowed attributes successes 9272 failures 0 runtime errors 0
  • gap
    • …appears as a root node successes 3187 failures 0 runtime errors 0
    • …should not have children successes 3187 failures 0 runtime errors 0
    • …only contains allowed attributes successes 3187 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 6 failures 0 runtime errors 0
    • …should not have children successes 6 failures 0 runtime errors 0
    • …appears as part of a gene successes 6 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 88 failures 0 runtime errors 0
    • …should not have children successes 88 failures 0 runtime errors 0
    • …appears as part of a gene successes 88 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 2 failures 0 runtime errors 0
    • …should not have children successes 2 failures 0 runtime errors 0
    • …appears as part of a gene successes 2 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 14 failures 0 runtime errors 0
    • …should not have children successes 14 failures 0 runtime errors 0
    • …appears as part of a gene successes 14 failures 0 runtime errors 0
  • gene
    • …only contains allowed attributes successes 9379 failures 0 runtime errors 0
    • …has consistent strands across all children successes 9379 failures 0 runtime errors 0
    • …has only allowed child types successes 9379 failures 0 runtime errors 0
    • …appears as a root node successes 9379 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 9379 failures 0 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 9269 failures 0 runtime errors 0
    • …only contains allowed attributes successes 9269 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 9269 failures 0 runtime errors 0
    • …has at least one CDS child successes 9269 failures 0 runtime errors 0
    • …has only allowed child types successes 9269 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 9265 failures 0 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 9269 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 9269 failures 0 runtime errors 0
    • …appears as part of a gene successes 9269 failures 0 runtime errors 0
  • polypeptide
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 9269 failures 0 runtime errors 0
    • …only contains allowed attributes successes 9269 failures 0 runtime errors 0
    • …has a required product attribute successes 9269 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 9269 failures 0 runtime errors 0
    • …must be derived_from a unique mRNA successes 9269 failures 0 runtime errors 0
    • …appears as a root node successes 9269 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings