Validation report with specification /nfs/users/nfs_s/ss34/annot/skel/misc/new_gff_format.lua

• Features
  • contig
    • …appears as a root node successes 10388 failures 0 runtime errors 0
    • …should not have children successes 10388 failures 0 runtime errors 0
    • …only contains allowed attributes successes 10388 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 8754 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 8754 failures 0 runtime errors 0
    • …only contains allowed attributes successes 8754 failures 0 runtime errors 0
  • gap
    • …appears as a root node successes 2108 failures 0 runtime errors 0
    • …should not have children successes 2108 failures 0 runtime errors 0
    • …only contains allowed attributes successes 2108 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 4 failures 0 runtime errors 0
    • …should not have children successes 4 failures 0 runtime errors 0
    • …appears as part of a gene successes 4 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 63 failures 0 runtime errors 0
    • …should not have children successes 63 failures 0 runtime errors 0
    • …appears as part of a gene successes 63 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 2 failures 0 runtime errors 0
    • …should not have children successes 2 failures 0 runtime errors 0
    • …appears as part of a gene successes 2 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 6 failures 0 runtime errors 0
    • …should not have children successes 6 failures 0 runtime errors 0
    • …appears as part of a gene successes 6 failures 0 runtime errors 0
  • gene
    • …only contains allowed attributes successes 8614 failures 0 runtime errors 0
    • …has consistent strands across all children successes 8614 failures 0 runtime errors 0
    • …has only allowed child types successes 8614 failures 0 runtime errors 0
    • …appears as a root node successes 8614 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 8614 failures 0 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 8539 failures 0 runtime errors 0
    • …only contains allowed attributes successes 8539 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 8539 failures 0 runtime errors 0
    • …has at least one CDS child successes 8539 failures 0 runtime errors 0
    • …has only allowed child types successes 8539 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 7687 failures 0 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 8539 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 8539 failures 0 runtime errors 0
    • …appears as part of a gene successes 8539 failures 0 runtime errors 0
  • polypeptide
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 8539 failures 0 runtime errors 0
    • …only contains allowed attributes successes 8539 failures 0 runtime errors 0
    • …has a required product attribute successes 8539 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 8539 failures 0 runtime errors 0
    • …must be derived_from a unique mRNA successes 8539 failures 0 runtime errors 0
    • …appears as a root node successes 8539 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings