Validation report with specification /nfs/users/nfs_s/ss34/annot/TCTULACL2/99_dist/../misc/new_gff_format.lua

• Features
  • contig
    • …appears as a root node successes 53083 failures 0 runtime errors 0
    • …should not have children successes 53083 failures 0 runtime errors 0
    • …only contains allowed attributes successes 53083 failures 0 runtime errors 0
  • CDS
    • …should not have children successes 26017 failures 0 runtime errors 0
    • …appears as child of an mRNA successes 26017 failures 0 runtime errors 0
    • …only contains allowed attributes successes 26017 failures 0 runtime errors 0
  • gap
    • …appears as a root node successes 7367 failures 0 runtime errors 0
    • …should not have children successes 7367 failures 0 runtime errors 0
    • …only contains allowed attributes successes 7367 failures 0 runtime errors 0
  • snoRNA
    • …only contains allowed attributes successes 10 failures 0 runtime errors 0
    • …should not have children successes 10 failures 0 runtime errors 0
    • …appears as part of a gene successes 10 failures 0 runtime errors 0
  • tRNA
    • …only contains allowed attributes successes 123 failures 0 runtime errors 0
    • …should not have children successes 123 failures 0 runtime errors 0
    • …appears as part of a gene successes 123 failures 0 runtime errors 0
  • snRNA
    • …only contains allowed attributes successes 9 failures 0 runtime errors 0
    • …should not have children successes 9 failures 0 runtime errors 0
    • …appears as part of a gene successes 9 failures 0 runtime errors 0
  • rRNA
    • …only contains allowed attributes successes 3 failures 0 runtime errors 0
    • …should not have children successes 3 failures 0 runtime errors 0
    • …appears as part of a gene successes 3 failures 0 runtime errors 0
  • gene
    • …only contains allowed attributes successes 25700 failures 0 runtime errors 0
    • …has consistent strands across all children successes 25700 failures 0 runtime errors 0
    • …has only allowed child types successes 25700 failures 0 runtime errors 0
    • …appears as a root node successes 25700 failures 0 runtime errors 0
    • …contains all child features within its coordinates successes 25700 failures 0 runtime errors 0
  • mRNA
    • …agrees exactly with CDS/UTR coordinates of its children successes 25555 failures 0 runtime errors 0
    • …only contains allowed attributes successes 25555 failures 0 runtime errors 0
    • …has a coding sequence >= 3bp successes 25555 failures 0 runtime errors 0
    • …has at least one CDS child successes 25555 failures 0 runtime errors 0
    • …has only allowed child types successes 25555 failures 0 runtime errors 0
    • …has non-partial CDS ending on a stop codon successes 23626 failures 0 runtime errors 0
    • …has non-selenocysteine CDS with no internal stop codons successes 25553 failures 0 runtime errors 0
    • …consists of less than 50% Ns successes 25555 failures 0 runtime errors 0
    • …appears as part of a gene successes 25555 failures 0 runtime errors 0
  • polypeptide
    • …agrees exactly with CDS of >=1 overlapping coding transcripts successes 25555 failures 0 runtime errors 0
    • …only contains allowed attributes successes 25555 failures 0 runtime errors 0
    • …has a required product attribute successes 25555 failures 0 runtime errors 0
    • …overlaps the transcript it derives_from successes 25555 failures 0 runtime errors 0
    • …must be derived_from a unique mRNA successes 25555 failures 0 runtime errors 0
    • …appears as a root node successes 25555 failures 0 runtime errors 0
• Regions
• Metadata
• Comments
• Sequences
• Warnings