TABLES.CHR2_ELEMENTS.TXT
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The content of this file is part of the data unraveled by a consortium of 
European laboratories supported by the Commission of the European Union in the 
framework of sequencing yeast chromosome II.

H. Feldmann et al. (1994) ' Complete sequence of yeast chromosome II', 
submitted

The dataset was developed in collaboration of
	H.W. Mewes
	Martinsried Institute for Protein Sequences (MIPS)
	Max-Planck-Institut fuer Biochemie, 85152 Martinsried, Germany
	Telephone:+49 89 8578 2656 FAX +49 89 8578 2655
	e-mail mewes@ehpmic.mips.biochem.mpg.de
	e-mail mewes@mips.embnet.org
	and
	Horst Feldmann
	Institut fuer Physiologische Chemie, Universitaet Muenchen, 
	Schillerstrasse 44, 80336 Muenchen, Germany
	Telephone:+49 89 5996 451 FAX +49 89 5996 316
	e-mail feldmann@dec1.bio.med.uni-muenchen.de

>>>>	The data may be used for scientific purposes under the condition 
	that the proper reference is given.                     <<<<<<<<<

	We have made every effort to ensure liability of the data and cannot 
	be responsible for the consequences to users of any errors resulting 
	from its use.

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Table 9. Yeast chromosome II: Features of the retrotransposable elements and 
          the centromere

______________________________________________________________________________
Coordinates in  	Features				MIPS
contig								working 	
								nomenclature
______________________________________________________________________________

  2894 -   3133		#LTR "delta remnant"	
  3139 -   3470		#LTR "solo delta"			YBL0803
  3476 -   3532		#LTR "delta remnant"			YBL0803a
 23537 -  23766		#LTR "delta remnant"			YBL0816a
		
 23672 -  23676		#repeat_unit "5 nt direct repeat ATAAT,
			Ty2 target sequence"	
 23677 -  24008		#LTR "Ty2 5'-delta"			YBL0817
 24009 -  24013		#repeat_unit "5 nt direct repeat TGGTA"	
 23968 -  25284		#CDS B_B438 gene="TY2A"			YBL0821
 25241 -  29278		# B_C1346  Ty see YBL0822	
 23968 -  25257,
 25259 -  29281		#CDS B_C1770t  gene="TY2B"		YBL0822
 25258 -  25264		#misc_feature "Ty2 frameshift CTTAGGC"	
 27163 -  27474(C)	B_D104 internal orf			YBL0822a
 29299 -  29303		#repeat_unit "5 nt direct repeat TGGTA"	
 29304 -  29635		#LTR "Ty2 3'-delta"			YBL0823
 29636 -  29640		#repeat_unit "5 nt direct repeat ATAAT, 
			Ty2 target sequence"	
		
 29636 -  29829		#LTR "delta remnant"			YBL0823a
 29884 -  30254		#LTR "tau remnant"			YBL0824
191020 - 191338(C)	#LTR "delta remnant"			YBL0307
191718 - 192058(C)	#LTR "sigma"				YBL0310
214940 - 215040		#LTR "delta remnant"			YBL0323a
		
215036 - 215040		#repeat_unit "5 nt direct repeat GGAAT, 
			Ty1 target sequence"	
215041 - 215374		#LTR "Ty15'-delta"			YBL0323b
215375 - 215379		#repeat_unit "5 nt direct repeat TGGTA"	
215334 - 216656		#CDS B_A440 gene="TY1A"			YBL0324
217135 - 220599		#B_B1155  Ty see YBL0325	
215334 - 216635,
216637 - 220602		#CDS B_B1755t gene="TY1B"		YBL0325
216636 - 216642		#misc_feature "Ty1 frameshift CTTAGGC"	
218405 - 218713		B_C103 internal orf			YBL0326
220620 - 220624		#repeat_unit "5 nt direct repeat TGGTA"	
220625 - 220956		#LTR "Ty1 3'-delta"			YBL0327
220957 - 220961		#repeat_unit "5 nt direct repeat GGAAT, 
			Ty1 target sequence"	
		
232210 - 232478		#misc_feature "centromere"		YBL01xx
232210 - 232217		#misc_feature "CEN element CDEI"	
232218 - 232301		#misc_feature "CEN element CDEII"	
232297 - 232307		#misc_feature "ARS consensus"	
232302 - 232326		#misc_feature "CEN element CDEIII"	
		
252669 - 253012(C)	#LTR "delta remnant"			YBR0204
		
253571 - 253576		#repeat_unit "5 nt direct repeat GTAAT, 
			Ty1 target sequence"	
253577 - 253908		#LTR "Ty1 5'-delta"			YBR0205a
253909 - 253913		#repeat_unit "5 nt direct repeat TGGTA"	
253868 - 255190		#CDS B_C440 gene="TY1A"			YBR0206
255669 - 259136		#B_A1156!Ty see YBR0207	
253868 - 255169,
255171 - 259139		#CDS B_A1756t gene="TY1B"		YBR0207
255170 - 255176		#misc_feature "Ty1 frameshift CTTAGGC"	
256939 - 257415		B_B159 internal orf			YBR0208
259157 - 259161		#repeat_unit "5 nt direct repeat TGGTA"	
259162 - 259493		#LTR "Ty1 3'-delta"			YBR0208a
259494 - 259498		#repeat_unit "5 nt direct repeat GTAAT, 
			Ty1 target sequence"	
		
260152 - 260257(C)	#LTR "delta remnant"			YBR0210
321071 - 321391		#LTR "delta remnant"			YBR0418
321392 - 321701		#LTR "delta remnant"			YBR0419
344460 - 344752		#LTR "delta remnant"			YBR0511a
637493 - 637863		#LTR "solo tau"	YBR1453
638367 - 638700 (C)	#LTR "delta remnant"			YBR1455
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