TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

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Name 

Preview 

Matches 

List 

1
CAGGCGCCCGCCACCGCCCC
37 MA0333.1 (MET31),  MA0373.1 (RPN4),  MA0334.1 (MET32),  UP00007_1 (Egr1_primary),  UP00002_1 (Sp4_primary),  UP00065_1 (Zfp161_primary),  MA0395.1 (STP2),  MA0068.1 (Pax4),  MA0449.1 (h),  UP00022_1 (Zfp740_primary)
2
AAAAAAAAAAATAAAAAAACAAAAAAATA
32 MA0346.1 (NHP6B),  UP00077_2 (Srf_secondary),  UP00037_1 (Zfp105_primary),  UP00097_2 (Mtf1_secondary),  UP00014_1 (Sox17_primary),  UP00073_1 (Foxa2_primary),  UP00028_2 (Tcfap2e_secondary),  UP00255_1 (Dbx1_3486.1),  UP00029_1 (Tbp_primary),  MA0345.1 (NHP6A)
3
CCAGCCTGGCCAACA
3 MA0267.1 (ACE2),  MA0146.1 (Zfx),  MA0381.1 (SKN7)
4
GGAGAATCGCATGAACCCAGGAGGCTGAG
16 MA0079.2 (SP1),  MA0285.1 (CRZ1),  MA0443.1 (btd),  MA0283.1 (CHA4),  MA0305.1 (GCR2),  MA0057.1 (MZF1_5-13),  UP00102_2 (Zic1_secondary),  MA0123.1 (abi4),  UP00057_2 (Zic2_secondary),  MA0413.1 (USV1)
5
TGTAGAGACGGGGTTTCA
14 MA0079.1 (SP1),  UP00082_2 (Zfp187_secondary),  MA0260.1 (che-1),  UP00195_1 (Six3_1732.2),  UP00192_1 (Six1_0935.2),  UP00159_1 (Six2_2307.2),  UP00008_3 (Six6_2267.4),  UP00008_4 (Six6_2267.5),  UP00093_1 (Klf7_primary),  MA0393.1 (STE12)
6
AGCTGGGATTA
18 UP00143_1 (Dobox5_3493.1),  MA0267.1 (ACE2),  MA0212.1 (bcd),  MA0234.1 (oc),  UP00208_1 (Obox5_2284.1),  UP00208_2 (Obox5_3963.2),  MA0190.1 (Gsc),  UP00229_1 (Otx1_2325.1),  UP00125_1 (Pitx2_2274.3),  UP00267_1 (Otx2_3441.1)
7
AAAAATACAAA
17 MA0041.1 (Foxd3),  UP00077_2 (Srf_secondary),  MA0082.1 (squamosa),  UP00073_2 (Foxa2_secondary),  MA0045.1 (HMG-I/Y),  UP00037_1 (Zfp105_primary),  UP00407_2 (Elf3_secondary),  MA0277.1 (AZF1),  MA0010.1 (br_Z1),  MA0317.1 (HCM1)
8
GGGGGAGGAGGGGGGAGGGGGGGGGGGGA
36 UP00022_1 (Zfp740_primary),  UP00099_2 (Ascl2_secondary),  MA0425.1 (YGR067C),  MA0068.1 (Pax4),  UP00021_1 (Zfp281_primary),  UP00033_2 (Zfp410_secondary),  UP00408_2 (Gabpa_secondary),  UP00043_2 (Bcl6b_secondary),  UP00002_1 (Sp4_primary),  MA0079.2 (SP1)
9
TCACTGCA
5 UP00031_1 (Zbtb3_primary),  UP00102_2 (Zic1_secondary),  UP00006_2 (Zic3_secondary),  MA0385.1 (SOK2),  UP00031_2 (Zbtb3_secondary)
10
CTCCTGACCTC
14 MA0364.1 (REI1),  MA0086.1 (sna),  UP00009_1 (Nr2f2_primary),  MA0427.1 (YJL103C),  MA0160.1 (NR4A2),  UP00053_1 (Rxra_primary),  UP00079_2 (Esrra_secondary),  MA0380.1 (SIP4),  MA0112.2 (ESR1),  MA0155.1 (INSM1)
11
ACCACACCCGGCTAA
11 MA0079.1 (SP1),  MA0039.2 (Klf4),  UP00099_2 (Ascl2_secondary),  MA0270.1 (AFT2),  UP00011_2 (Irf6_secondary),  MA0425.1 (YGR067C),  UP00006_2 (Zic3_secondary),  UP00093_1 (Klf7_primary),  MA0450.1 (hkb),  MA0002.2 (RUNX1)
12
CTCCTGCCTCAGCCC
9 UP00033_2 (Zfp410_secondary),  UP00043_2 (Bcl6b_secondary),  MA0079.2 (SP1),  UP00408_2 (Gabpa_secondary),  UP00085_1 (Sfpi1_primary),  MA0068.1 (Pax4),  MA0410.1 (UGA3),  MA0079.1 (SP1),  MA0145.1 (Tcfcp2l1)
13
TGCAGTGGTGCGATC
6 UP00031_1 (Zbtb3_primary),  UP00103_1 (Jundm2_primary),  MA0333.1 (MET31),  UP00041_2 (Foxj1_secondary),  UP00032_2 (Gata3_secondary),  UP00020_1 (Atf1_primary)
14
CACACACACCCACA
11 MA0073.1 (RREB1),  UP00042_2 (Gm397_secondary),  MA0359.1 (RAP1),  UP00034_2 (Sox7_secondary),  MA0270.1 (AFT2),  UP00022_1 (Zfp740_primary),  MA0162.1 (Egr1),  UP00036_2 (Myf6_secondary),  UP00096_2 (Sox13_secondary),  MA0332.1 (MET28)
15
TGTCATCTGAGAGACAGAGTG
3 MA0205.1 (Trl),  UP00033_2 (Zfp410_secondary),  UP00011_2 (Irf6_secondary)
16
CACTTTGG
9 MA0021.1 (Dof3),  MA0114.1 (HNF4A),  UP00001_2 (E2F2_secondary),  MA0332.1 (MET28),  MA0138.1 (REST),  UP00066_2 (Hnf4a_secondary),  MA0335.1 (MET4),  MA0050.1 (IRF1),  MA0247.1 (tin)
17
CAGCCAGG
1 MA0079.1 (SP1)
18
GAGATGGGGTT
21 MA0268.1 (ADR1),  MA0436.1 (YPR022C),  UP00099_2 (Ascl2_secondary),  MA0079.1 (SP1),  MA0079.2 (SP1),  MA0056.1 (MZF1_1-4),  MA0337.1 (MIG1),  MA0339.1 (MIG3),  MA0338.1 (MIG2),  MA0431.1 (YML081W)
19
GGGGTGCCTGTGCTC
8 UP00036_2 (Myf6_secondary),  MA0270.1 (AFT2),  MA0068.1 (Pax4),  UP00041_2 (Foxj1_secondary),  MA0079.1 (SP1),  MA0268.1 (ADR1),  MA0372.1 (RPH1),  UP00036_1 (Myf6_primary)
20
CATTTCCCACT
13 MA0152.1 (NFATC2),  MA0137.2 (STAT1),  UP00007_2 (Egr1_secondary),  MA0085.1 (Su(H)),  MA0282.1 (CEP3),  MA0088.1 (znf143),  UP00031_2 (Zbtb3_secondary),  UP00096_2 (Sox13_secondary),  MA0331.1 (MCM1),  MA0137.1 (STAT1)

Target Databases

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Database 

Number of Motifs 

Motifs Matched 

JASPAR_CORE_2009.meme 476 102
uniprobe_mouse.meme 386 85

Matches to Query: 1

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Summary 

Alignment 

Name MA0333.1
Alt. Name MET31
Database JASPAR_CORE_2009.meme
p-value 4.75534e-05
E-value 0.040991
q-value 0.0810098
Overlap 9
Offset -8
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0373.1
Alt. Name RPN4
Database JASPAR_CORE_2009.meme
p-value 0.00014965
E-value 0.128998
q-value 0.127468
Overlap 7
Offset -8
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0334.1
Alt. Name MET32
Database JASPAR_CORE_2009.meme
p-value 0.000251537
E-value 0.216825
q-value 0.142715
Overlap 7
Offset -8
Orientation Normal
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Summary 

Alignment 

Name UP00007_1
Alt. Name Egr1_primary
Database uniprobe_mouse.meme
p-value 0.000335099
E-value 0.288855
q-value 0.142715
Overlap 14
Offset -6
Orientation Normal
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Summary 

Alignment 

Name UP00002_1
Alt. Name Sp4_primary
Database uniprobe_mouse.meme
p-value 0.00070103
E-value 0.604288
q-value 0.207687
Overlap 17
Offset -3
Orientation Normal
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Summary 

Alignment 

Name UP00065_1
Alt. Name Zfp161_primary
Database uniprobe_mouse.meme
p-value 0.000851139
E-value 0.733682
q-value 0.207687
Overlap 15
Offset 1
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0395.1
Alt. Name STP2
Database JASPAR_CORE_2009.meme
p-value 0.000962027
E-value 0.829267
q-value 0.207687
Overlap 20
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0068.1
Alt. Name Pax4
Database JASPAR_CORE_2009.meme
p-value 0.000975311
E-value 0.840718
q-value 0.207687
Overlap 19
Offset 11
Orientation Normal
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Summary 

Alignment 

Name MA0449.1
Alt. Name h
Database JASPAR_CORE_2009.meme
p-value 0.00134288
E-value 1.15757
q-value 0.228767
Overlap 10
Offset -2
Orientation Normal
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Summary 

Alignment 

Name UP00022_1
Alt. Name Zfp740_primary
Database uniprobe_mouse.meme
p-value 0.001653
E-value 1.42489
q-value 0.255998
Overlap 16
Offset -4
Orientation Normal
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Summary 

Alignment 

Name UP00000_2
Alt. Name Smad3_secondary
Database uniprobe_mouse.meme
p-value 0.00203107
E-value 1.75078
q-value 0.271764
Overlap 17
Offset -1
Orientation Normal
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Summary 

Alignment 

Name MA0285.1
Alt. Name CRZ1
Database JASPAR_CORE_2009.meme
p-value 0.00207386
E-value 1.78766
q-value 0.271764
Overlap 9
Offset -5
Orientation Normal
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Summary 

Alignment 

Name UP00060_2
Alt. Name Max_secondary
Database uniprobe_mouse.meme
p-value 0.00250191
E-value 2.15665
q-value 0.304439
Overlap 14
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0079.2
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.0035396
E-value 3.05114
q-value 0.352384
Overlap 9
Offset -11
Orientation Normal
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Summary 

Alignment 

Name UP00408_2
Alt. Name Gabpa_secondary
Database uniprobe_mouse.meme
p-value 0.003825
E-value 3.29715
q-value 0.352384
Overlap 16
Offset -3
Orientation Normal
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Summary 

Alignment 

Name MA0351.1
Alt. Name DOT6
Database JASPAR_CORE_2009.meme
p-value 0.00395924
E-value 3.41286
q-value 0.352384
Overlap 19
Offset -1
Orientation Normal
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Summary 

Alignment 

Name UP00021_1
Alt. Name Zfp281_primary
Database uniprobe_mouse.meme
p-value 0.00420997
E-value 3.62899
q-value 0.352384
Overlap 14
Offset -6
Orientation Normal
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Summary 

Alignment 

Name MA0350.1
Alt. Name TOD6
Database JASPAR_CORE_2009.meme
p-value 0.0043282
E-value 3.73091
q-value 0.352384
Overlap 19
Offset -1
Orientation Normal
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Summary 

Alignment 

Name UP00043_2
Alt. Name Bcl6b_secondary
Database uniprobe_mouse.meme
p-value 0.00468037
E-value 4.03448
q-value 0.352384
Overlap 11
Offset -9
Orientation Normal
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Summary 

Alignment 

Name MA0146.1
Alt. Name Zfx
Database JASPAR_CORE_2009.meme
p-value 0.0048312
E-value 4.16449
q-value 0.352384
Overlap 14
Offset -6
Orientation Normal
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Summary 

Alignment 

Name UP00033_2
Alt. Name Zfp410_secondary
Database uniprobe_mouse.meme
p-value 0.004975
E-value 4.28845
q-value 0.352384
Overlap 12
Offset -8
Orientation Normal
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Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00510443
E-value 4.40002
q-value 0.352384
Overlap 10
Offset -10
Orientation Reverse Complement
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Summary 

Alignment 

Name UP00099_2
Alt. Name Ascl2_secondary
Database uniprobe_mouse.meme
p-value 0.00517131
E-value 4.45767
q-value 0.352384
Overlap 13
Offset -7
Orientation Normal
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Summary 

Alignment 

Name UP00068_2
Alt. Name Eomes_secondary
Database uniprobe_mouse.meme
p-value 0.00517131
E-value 4.45767
q-value 0.352384
Overlap 16
Offset -4
Orientation Reverse Complement
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Summary 

Alignment 

Name UP00036_2
Alt. Name Myf6_secondary
Database uniprobe_mouse.meme
p-value 0.00604867
E-value 5.21396
q-value 0.361402
Overlap 15
Offset -2
Orientation Normal
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Summary 

Alignment 

Name MA0332.1
Alt. Name MET28
Database JASPAR_CORE_2009.meme
p-value 0.00609001
E-value 5.24959
q-value 0.361402
Overlap 6
Offset -10
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0003.1
Alt. Name TFAP2A
Database JASPAR_CORE_2009.meme
p-value 0.00634201
E-value 5.46681
q-value 0.361402
Overlap 9
Offset -9
Orientation Normal
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Summary 

Alignment 

Name UP00001_1
Alt. Name E2F2_primary
Database uniprobe_mouse.meme
p-value 0.00636439
E-value 5.4861
q-value 0.361402
Overlap 15
Offset -2
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0425.1
Alt. Name YGR067C
Database JASPAR_CORE_2009.meme
p-value 0.00697697
E-value 6.01415
q-value 0.383408
Overlap 13
Offset -7
Orientation Normal
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Summary 

Alignment 

Name UP00003_1
Alt. Name E2F3_primary
Database uniprobe_mouse.meme
p-value 0.0085968
E-value 7.41044
q-value 0.433539
Overlap 15
Offset -2
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0100.1
Alt. Name Myb
Database JASPAR_CORE_2009.meme
p-value 0.00864992
E-value 7.45623
q-value 0.433539
Overlap 8
Offset -10
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0034.1
Alt. Name Gamyb
Database JASPAR_CORE_2009.meme
p-value 0.00865269
E-value 7.45862
q-value 0.433539
Overlap 10
Offset -8
Orientation Normal
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Summary 

Alignment 

Name MA0123.1
Alt. Name abi4
Database JASPAR_CORE_2009.meme
p-value 0.00916119
E-value 7.89695
q-value 0.445902
Overlap 9
Offset -11
Orientation Normal
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Summary 

Alignment 

Name MA0376.1
Alt. Name RTG3
Database JASPAR_CORE_2009.meme
p-value 0.0100015
E-value 8.62132
q-value 0.46049
Overlap 17
Offset 3
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0014.1
Alt. Name Pax5
Database JASPAR_CORE_2009.meme
p-value 0.0104357
E-value 8.99558
q-value 0.467836
Overlap 20
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0039.2
Alt. Name Klf4
Database JASPAR_CORE_2009.meme
p-value 0.0108536
E-value 9.35576
q-value 0.471914
Overlap 10
Offset -9
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0095.1
Alt. Name YY1
Database JASPAR_CORE_2009.meme
p-value 0.0110807
E-value 9.55157
q-value 0.471914
Overlap 6
Offset -9
Orientation Normal
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Matches to Query: 2

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Summary 

Alignment 

Name MA0346.1
Alt. Name NHP6B
Database JASPAR_CORE_2009.meme
p-value 7.87267e-05
E-value 0.0678624
q-value 0.0702498
Overlap 20
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name UP00077_2
Alt. Name Srf_secondary
Database uniprobe_mouse.meme
p-value 0.000128577
E-value 0.110833
q-value 0.0702498
Overlap 17
Offset -8
Orientation Normal
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Summary 

Alignment 

Name UP00037_1
Alt. Name Zfp105_primary
Database uniprobe_mouse.meme
p-value 0.000138073
E-value 0.119019
q-value 0.0702498
Overlap 15
Offset -9
Orientation Normal
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Summary 

Alignment 

Name UP00097_2
Alt. Name Mtf1_secondary
Database uniprobe_mouse.meme
p-value 0.00016505
E-value 0.142273
q-value 0.0702498
Overlap 14
Offset -5
Orientation Normal
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Summary 

Alignment 

Name UP00014_1
Alt. Name Sox17_primary
Database uniprobe_mouse.meme
p-value 0.000321115
E-value 0.276801
q-value 0.0912323
Overlap 15
Offset -14
Orientation Normal
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Summary 

Alignment 

Name UP00073_1
Alt. Name Foxa2_primary
Database uniprobe_mouse.meme
p-value 0.000321521
E-value 0.277151
q-value 0.0912323
Overlap 17
Offset -5
Orientation Normal
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Summary 

Alignment 

Name UP00028_2
Alt. Name Tcfap2e_secondary
Database uniprobe_mouse.meme
p-value 0.000400534
E-value 0.34526
q-value 0.0974163
Overlap 14
Offset -7
Orientation Normal
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Summary 

Alignment 

Name UP00255_1
Alt. Name Dbx1_3486.1
Database uniprobe_mouse.meme
p-value 0.00091022
E-value 0.78461
q-value 0.158812
Overlap 17
Offset -4
Orientation Normal
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Summary 

Alignment 

Name UP00029_1
Alt. Name Tbp_primary
Database uniprobe_mouse.meme
p-value 0.000923904
E-value 0.796405
q-value 0.158812
Overlap 16
Offset -5
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0345.1
Alt. Name NHP6A
Database JASPAR_CORE_2009.meme
p-value 0.000932812
E-value 0.804084
q-value 0.158812
Overlap 21
Offset -5
Orientation Normal
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Summary 

Alignment 

Name UP00030_1
Alt. Name Sox11_primary
Database uniprobe_mouse.meme
p-value 0.00109564
E-value 0.944438
q-value 0.159921
Overlap 17
Offset -12
Orientation Normal
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Summary 

Alignment 

Name UP00041_1
Alt. Name Foxj1_primary
Database uniprobe_mouse.meme
p-value 0.00135544
E-value 1.16839
q-value 0.159921
Overlap 16
Offset -7
Orientation Normal
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Summary 

Alignment 

Name UP00407_2
Alt. Name Elf3_secondary
Database uniprobe_mouse.meme
p-value 0.00157393
E-value 1.35673
q-value 0.159921
Overlap 17
Offset -8
Orientation Normal
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Summary 

Alignment 

Name UP00061_2
Alt. Name Foxl1_secondary
Database uniprobe_mouse.meme
p-value 0.00163395
E-value 1.40847
q-value 0.159921
Overlap 16
Offset -7
Orientation Normal
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Summary 

Alignment 

Name MA0041.1
Alt. Name Foxd3
Database JASPAR_CORE_2009.meme
p-value 0.00163527
E-value 1.4096
q-value 0.159921
Overlap 12
Offset -12
Orientation Reverse Complement
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Summary 

Alignment 

Name MA0377.1
Alt. Name SFL1
Database JASPAR_CORE_2009.meme
p-value 0.00166459
E-value 1.43487
q-value 0.159921
Overlap 21
Offset -7
Orientation Normal
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Summary 

Alignment 

Name UP00034_1
Alt. Name Sox7_primary
Database uniprobe_mouse.meme
p-value 0.00181453
E-value 1.56412
q-value 0.159921
Overlap 19
Offset -10
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00062_1
Alt. Name Sox4_primary
Database uniprobe_mouse.meme
p-value 0.00187865
E-value 1.6194
q-value 0.159921
Overlap 17
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00051_1
Alt. Name Sox8_primary
Database uniprobe_mouse.meme
p-value 0.00187865
E-value 1.6194
q-value 0.159921
Overlap 17
Offset -12
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00061_1
Alt. Name Foxl1_primary
Database uniprobe_mouse.meme
p-value 0.00250826
E-value 2.16212
q-value 0.194107
Overlap 17
Offset -5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00025_1
Alt. Name Foxk1_primary
Database uniprobe_mouse.meme
p-value 0.00297294
E-value 2.56267
q-value 0.220064
Overlap 17
Offset -5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0045.1
Alt. Name HMG-I/Y
Database JASPAR_CORE_2009.meme
p-value 0.00334901
E-value 2.88684
q-value 0.228069
Overlap 16
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00039_1
Alt. Name Foxj3_primary
Database uniprobe_mouse.meme
p-value 0.0037145
E-value 3.2019
q-value 0.236198
Overlap 17
Offset -5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00073_2
Alt. Name Foxa2_secondary
Database uniprobe_mouse.meme
p-value 0.00374585
E-value 3.22892
q-value 0.236198
Overlap 15
Offset -11
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00039_2
Alt. Name Foxj3_secondary
Database uniprobe_mouse.meme
p-value 0.0043771
E-value 3.77306
q-value 0.266145
Overlap 17
Offset -9
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00101_2
Alt. Name Sox12_secondary
Database uniprobe_mouse.meme
p-value 0.0047142
E-value 4.06364
q-value 0.276758
Overlap 16
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00064_1
Alt. Name Sox18_primary
Database uniprobe_mouse.meme
p-value 0.00498544
E-value 4.29745
q-value 0.282926
Overlap 16
Offset -11
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00058_2
Alt. Name Tcf3_secondary
Database uniprobe_mouse.meme
p-value 0.00532366
E-value 4.58899
q-value 0.292374
Overlap 15
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00024_2
Alt. Name Glis2_secondary
Database uniprobe_mouse.meme
p-value 0.00573335
E-value 4.94215
q-value 0.305034
Overlap 14
Offset -7
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0296.1
Alt. Name FKH1
Database JASPAR_CORE_2009.meme
p-value 0.00653968
E-value 5.6372
q-value 0.337391
Overlap 20
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00091_1
Alt. Name Sox5_primary
Database uniprobe_mouse.meme
p-value 0.00814262
E-value 7.01894
q-value 0.407733
Overlap 16
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0042.1
Alt. Name FOXI1
Database JASPAR_CORE_2009.meme
p-value 0.00886621
E-value 7.64267
q-value 0.431281
Overlap 12
Offset -12
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 3

 Previous Next Top

Summary 

Alignment 

Name MA0267.1
Alt. Name ACE2
Database JASPAR_CORE_2009.meme
p-value 0.00498318
E-value 4.2955
q-value 1
Overlap 6
Offset 1
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0146.1
Alt. Name Zfx
Database JASPAR_CORE_2009.meme
p-value 0.00801666
E-value 6.91036
q-value 1
Overlap 14
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0381.1
Alt. Name SKN7
Database JASPAR_CORE_2009.meme
p-value 0.0111397
E-value 9.60242
q-value 1
Overlap 6
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 4

 Previous Next Top

Summary 

Alignment 

Name MA0079.2
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00061526
E-value 0.530354
q-value 0.653092
Overlap 10
Offset -19
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0285.1
Alt. Name CRZ1
Database JASPAR_CORE_2009.meme
p-value 0.000757647
E-value 0.653092
q-value 0.653092
Overlap 9
Offset -20
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0443.1
Alt. Name btd
Database JASPAR_CORE_2009.meme
p-value 0.00143633
E-value 1.23811
q-value 0.666761
Overlap 10
Offset -18
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0283.1
Alt. Name CHA4
Database JASPAR_CORE_2009.meme
p-value 0.00166831
E-value 1.43808
q-value 0.666761
Overlap 7
Offset -22
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0305.1
Alt. Name GCR2
Database JASPAR_CORE_2009.meme
p-value 0.00193376
E-value 1.6669
q-value 0.666761
Overlap 7
Offset -18
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0057.1
Alt. Name MZF1_5-13
Database JASPAR_CORE_2009.meme
p-value 0.00241643
E-value 2.08296
q-value 0.694321
Overlap 10
Offset -19
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00102_2
Alt. Name Zic1_secondary
Database uniprobe_mouse.meme
p-value 0.00457465
E-value 3.94335
q-value 0.966078
Overlap 15
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0123.1
Alt. Name abi4
Database JASPAR_CORE_2009.meme
p-value 0.00496029
E-value 4.27577
q-value 0.966078
Overlap 10
Offset -19
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00057_2
Alt. Name Zic2_secondary
Database uniprobe_mouse.meme
p-value 0.00504333
E-value 4.34735
q-value 0.966078
Overlap 15
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0413.1
Alt. Name USV1
Database JASPAR_CORE_2009.meme
p-value 0.00628293
E-value 5.41589
q-value 1
Overlap 20
Offset -9
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00647779
E-value 5.58385
q-value 1
Overlap 9
Offset -20
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0118.1
Alt. Name Macho-1
Database JASPAR_CORE_2009.meme
p-value 0.00762995
E-value 6.57702
q-value 1
Overlap 9
Offset -17
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00053_1
Alt. Name Rxra_primary
Database uniprobe_mouse.meme
p-value 0.00817112
E-value 7.04351
q-value 1
Overlap 17
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00011_2
Alt. Name Irf6_secondary
Database uniprobe_mouse.meme
p-value 0.0102573
E-value 8.84176
q-value 1
Overlap 15
Offset -12
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00006_2
Alt. Name Zic3_secondary
Database uniprobe_mouse.meme
p-value 0.0112435
E-value 9.69188
q-value 1
Overlap 15
Offset -12
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0427.1
Alt. Name YJL103C
Database JASPAR_CORE_2009.meme
p-value 0.0115941
E-value 9.99407
q-value 1
Overlap 11
Offset -13
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 5

 Previous Next Top

Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.000630128
E-value 0.543171
q-value 0.706583
Overlap 10
Offset -4
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00082_2
Alt. Name Zfp187_secondary
Database uniprobe_mouse.meme
p-value 0.00117925
E-value 1.01652
q-value 0.706583
Overlap 16
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0260.1
Alt. Name che-1
Database JASPAR_CORE_2009.meme
p-value 0.00122955
E-value 1.05987
q-value 0.706583
Overlap 6
Offset -11
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00195_1
Alt. Name Six3_1732.2
Database uniprobe_mouse.meme
p-value 0.00238422
E-value 2.0552
q-value 0.858073
Overlap 12
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00192_1
Alt. Name Six1_0935.2
Database uniprobe_mouse.meme
p-value 0.00248861
E-value 2.14518
q-value 0.858073
Overlap 12
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00159_1
Alt. Name Six2_2307.2
Database uniprobe_mouse.meme
p-value 0.00379381
E-value 3.27026
q-value 0.973936
Overlap 12
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00008_3
Alt. Name Six6_2267.4
Database uniprobe_mouse.meme
p-value 0.00395449
E-value 3.40877
q-value 0.973936
Overlap 12
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00008_4
Alt. Name Six6_2267.5
Database uniprobe_mouse.meme
p-value 0.00485706
E-value 4.18678
q-value 1
Overlap 12
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00093_1
Alt. Name Klf7_primary
Database uniprobe_mouse.meme
p-value 0.00555131
E-value 4.78523
q-value 1
Overlap 16
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0393.1
Alt. Name STE12
Database JASPAR_CORE_2009.meme
p-value 0.00696442
E-value 6.00333
q-value 1
Overlap 7
Offset -11
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00008_1
Alt. Name Six6_primary
Database uniprobe_mouse.meme
p-value 0.00755372
E-value 6.5113
q-value 1
Overlap 12
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00021_2
Alt. Name Zfp281_secondary
Database uniprobe_mouse.meme
p-value 0.00785747
E-value 6.77314
q-value 1
Overlap 16
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0111.1
Alt. Name Spz1
Database JASPAR_CORE_2009.meme
p-value 0.00884656
E-value 7.62573
q-value 1
Overlap 9
Offset -9
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00043_2
Alt. Name Bcl6b_secondary
Database uniprobe_mouse.meme
p-value 0.00970458
E-value 8.36535
q-value 1
Overlap 15
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 6

 Previous Next Top

Summary 

Alignment 

Name UP00143_1
Alt. Name Dobox5_3493.1
Database uniprobe_mouse.meme
p-value 0.000371881
E-value 0.320561
q-value 0.299306
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0267.1
Alt. Name ACE2
Database JASPAR_CORE_2009.meme
p-value 0.000678618
E-value 0.584969
q-value 0.299306
Overlap 7
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0212.1
Alt. Name bcd
Database JASPAR_CORE_2009.meme
p-value 0.00086589
E-value 0.746397
q-value 0.299306
Overlap 6
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0234.1
Alt. Name oc
Database JASPAR_CORE_2009.meme
p-value 0.00086589
E-value 0.746397
q-value 0.299306
Overlap 6
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00208_1
Alt. Name Obox5_2284.1
Database uniprobe_mouse.meme
p-value 0.000940247
E-value 0.810493
q-value 0.299306
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00208_2
Alt. Name Obox5_3963.2
Database uniprobe_mouse.meme
p-value 0.00104433
E-value 0.900216
q-value 0.299306
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0190.1
Alt. Name Gsc
Database JASPAR_CORE_2009.meme
p-value 0.0013264
E-value 1.14335
q-value 0.306023
Overlap 6
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00229_1
Alt. Name Otx1_2325.1
Database uniprobe_mouse.meme
p-value 0.0014237
E-value 1.22723
q-value 0.306023
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00125_1
Alt. Name Pitx2_2274.3
Database uniprobe_mouse.meme
p-value 0.00183278
E-value 1.57986
q-value 0.350184
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00267_1
Alt. Name Otx2_3441.1
Database uniprobe_mouse.meme
p-value 0.00212771
E-value 1.83409
q-value 0.365881
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00089_2
Alt. Name Tcf1_secondary
Database uniprobe_mouse.meme
p-value 0.00254209
E-value 2.19128
q-value 0.381543
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0402.1
Alt. Name SWI5
Database JASPAR_CORE_2009.meme
p-value 0.00266255
E-value 2.29512
q-value 0.381543
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0201.1
Alt. Name Ptx1
Database JASPAR_CORE_2009.meme
p-value 0.00358088
E-value 3.08672
q-value 0.473667
Overlap 6
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00265_1
Alt. Name Pitx3_3497.2
Database uniprobe_mouse.meme
p-value 0.00508037
E-value 4.37928
q-value 0.603348
Overlap 10
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00160_1
Alt. Name Obox3_3439.1
Database uniprobe_mouse.meme
p-value 0.00526298
E-value 4.53669
q-value 0.603348
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00153_1
Alt. Name Pitx1_2312.1
Database uniprobe_mouse.meme
p-value 0.00576712
E-value 4.97126
q-value 0.61982
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0441.1
Alt. Name ZMS1
Database JASPAR_CORE_2009.meme
p-value 0.00920625
E-value 7.93579
q-value 0.931238
Overlap 9
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00122_1
Alt. Name Tgif1_2342.2
Database uniprobe_mouse.meme
p-value 0.00984083
E-value 8.4828
q-value 0.940127
Overlap 11
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 7

 Previous Next Top

Summary 

Alignment 

Name MA0041.1
Alt. Name Foxd3
Database JASPAR_CORE_2009.meme
p-value 0.000496847
E-value 0.428282
q-value 0.777167
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00077_2
Alt. Name Srf_secondary
Database uniprobe_mouse.meme
p-value 0.000901586
E-value 0.777167
q-value 0.777167
Overlap 11
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0082.1
Alt. Name squamosa
Database JASPAR_CORE_2009.meme
p-value 0.0016377
E-value 1.4117
q-value 0.856076
Overlap 11
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00073_2
Alt. Name Foxa2_secondary
Database uniprobe_mouse.meme
p-value 0.00198626
E-value 1.71215
q-value 0.856076
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0045.1
Alt. Name HMG-I/Y
Database JASPAR_CORE_2009.meme
p-value 0.00270601
E-value 2.33258
q-value 0.933032
Overlap 11
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00037_1
Alt. Name Zfp105_primary
Database uniprobe_mouse.meme
p-value 0.00355341
E-value 3.06304
q-value 0.944301
Overlap 11
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00407_2
Alt. Name Elf3_secondary
Database uniprobe_mouse.meme
p-value 0.00434552
E-value 3.74584
q-value 0.944301
Overlap 11
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0277.1
Alt. Name AZF1
Database JASPAR_CORE_2009.meme
p-value 0.00438191
E-value 3.7772
q-value 0.944301
Overlap 9
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0010.1
Alt. Name br_Z1
Database JASPAR_CORE_2009.meme
p-value 0.00670883
E-value 5.78301
q-value 1
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0317.1
Alt. Name HCM1
Database JASPAR_CORE_2009.meme
p-value 0.00742221
E-value 6.39794
q-value 1
Overlap 8
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00030_1
Alt. Name Sox11_primary
Database uniprobe_mouse.meme
p-value 0.00939906
E-value 8.10199
q-value 1
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00062_1
Alt. Name Sox4_primary
Database uniprobe_mouse.meme
p-value 0.00981772
E-value 8.46288
q-value 1
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0442.1
Alt. Name SOX10
Database JASPAR_CORE_2009.meme
p-value 0.0106352
E-value 9.16753
q-value 1
Overlap 5
Offset -6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0459.1
Alt. Name tll
Database JASPAR_CORE_2009.meme
p-value 0.0109013
E-value 9.3969
q-value 1
Overlap 10
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0042.1
Alt. Name FOXI1
Database JASPAR_CORE_2009.meme
p-value 0.0110009
E-value 9.48277
q-value 1
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00061_2
Alt. Name Foxl1_secondary
Database uniprobe_mouse.meme
p-value 0.0111325
E-value 9.59624
q-value 1
Overlap 11
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00058_2
Alt. Name Tcf3_secondary
Database uniprobe_mouse.meme
p-value 0.011335
E-value 9.77081
q-value 1
Overlap 11
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 8

 Previous Next Top

Summary 

Alignment 

Name UP00022_1
Alt. Name Zfp740_primary
Database uniprobe_mouse.meme
p-value 8.96271e-07
E-value 0.000772586
q-value 0.000764758
Overlap 16
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00099_2
Alt. Name Ascl2_secondary
Database uniprobe_mouse.meme
p-value 8.96271e-07
E-value 0.000772586
q-value 0.000764758
Overlap 16
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0425.1
Alt. Name YGR067C
Database JASPAR_CORE_2009.meme
p-value 3.05342e-06
E-value 0.00263205
q-value 0.00173692
Overlap 14
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0068.1
Alt. Name Pax4
Database JASPAR_CORE_2009.meme
p-value 5.24947e-06
E-value 0.00452505
q-value 0.0022396
Overlap 22
Offset -7
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00021_1
Alt. Name Zfp281_primary
Database uniprobe_mouse.meme
p-value 6.97378e-06
E-value 0.0060114
q-value 0.0023802
Overlap 15
Offset -6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00033_2
Alt. Name Zfp410_secondary
Database uniprobe_mouse.meme
p-value 2.38385e-05
E-value 0.0205488
q-value 0.00600853
Overlap 17
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00408_2
Alt. Name Gabpa_secondary
Database uniprobe_mouse.meme
p-value 2.46463e-05
E-value 0.0212451
q-value 0.00600853
Overlap 16
Offset -6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00043_2
Alt. Name Bcl6b_secondary
Database uniprobe_mouse.meme
p-value 4.34057e-05
E-value 0.0374157
q-value 0.00925915
Overlap 16
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00002_1
Alt. Name Sp4_primary
Database uniprobe_mouse.meme
p-value 8.6176e-05
E-value 0.0742837
q-value 0.0154441
Overlap 17
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.2
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 9.30225e-05
E-value 0.0801854
q-value 0.0154441
Overlap 10
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00000_2
Alt. Name Smad3_secondary
Database uniprobe_mouse.meme
p-value 9.95498e-05
E-value 0.0858119
q-value 0.0154441
Overlap 17
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00070_2
Alt. Name Gcm1_secondary
Database uniprobe_mouse.meme
p-value 0.000163187
E-value 0.140667
q-value 0.023207
Overlap 17
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0431.1
Alt. Name YML081W
Database JASPAR_CORE_2009.meme
p-value 0.000230474
E-value 0.198668
q-value 0.0302547
Overlap 9
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0057.1
Alt. Name MZF1_5-13
Database JASPAR_CORE_2009.meme
p-value 0.000401163
E-value 0.345802
q-value 0.0460917
Overlap 10
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0366.1
Alt. Name RGM1
Database JASPAR_CORE_2009.meme
p-value 0.000405135
E-value 0.349226
q-value 0.0460917
Overlap 5
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0337.1
Alt. Name MIG1
Database JASPAR_CORE_2009.meme
p-value 0.000619283
E-value 0.533822
q-value 0.0660517
Overlap 7
Offset -7
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0268.1
Alt. Name ADR1
Database JASPAR_CORE_2009.meme
p-value 0.000766596
E-value 0.660806
q-value 0.0769542
Overlap 7
Offset -7
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0342.1
Alt. Name MSN4
Database JASPAR_CORE_2009.meme
p-value 0.000817531
E-value 0.704712
q-value 0.077508
Overlap 5
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0436.1
Alt. Name YPR022C
Database JASPAR_CORE_2009.meme
p-value 0.00127295
E-value 1.09729
q-value 0.114333
Overlap 7
Offset -6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00096_2
Alt. Name Sox13_secondary
Database uniprobe_mouse.meme
p-value 0.00145356
E-value 1.25296
q-value 0.124027
Overlap 17
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0341.1
Alt. Name MSN2
Database JASPAR_CORE_2009.meme
p-value 0.00163349
E-value 1.40807
q-value 0.132743
Overlap 5
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00007_1
Alt. Name Egr1_primary
Database uniprobe_mouse.meme
p-value 0.00219757
E-value 1.89431
q-value 0.170465
Overlap 14
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0338.1
Alt. Name MIG2
Database JASPAR_CORE_2009.meme
p-value 0.00267854
E-value 2.3089
q-value 0.188103
Overlap 7
Offset -6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0339.1
Alt. Name MIG3
Database JASPAR_CORE_2009.meme
p-value 0.00267854
E-value 2.3089
q-value 0.188103
Overlap 7
Offset -6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00079_2
Alt. Name Esrra_secondary
Database uniprobe_mouse.meme
p-value 0.00275562
E-value 2.37535
q-value 0.188103
Overlap 17
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0139.1
Alt. Name CTCF
Database JASPAR_CORE_2009.meme
p-value 0.00351447
E-value 3.02947
q-value 0.230675
Overlap 19
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0443.1
Alt. Name btd
Database JASPAR_CORE_2009.meme
p-value 0.00504813
E-value 4.35148
q-value 0.308999
Overlap 10
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00053_1
Alt. Name Rxra_primary
Database uniprobe_mouse.meme
p-value 0.00506992
E-value 4.37027
q-value 0.308999
Overlap 17
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00036_1
Alt. Name Myf6_primary
Database uniprobe_mouse.meme
p-value 0.00651061
E-value 5.61215
q-value 0.383123
Overlap 16
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0014.1
Alt. Name Pax5
Database JASPAR_CORE_2009.meme
p-value 0.00721596
E-value 6.22016
q-value 0.410476
Overlap 19
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00093_1
Alt. Name Klf7_primary
Database uniprobe_mouse.meme
p-value 0.00900197
E-value 7.7597
q-value 0.495554
Overlap 16
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00086_2
Alt. Name Irf3_secondary
Database uniprobe_mouse.meme
p-value 0.00933119
E-value 8.04349
q-value 0.497625
Overlap 14
Offset -3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00082_2
Alt. Name Zfp187_secondary
Database uniprobe_mouse.meme
p-value 0.0105495
E-value 9.0937
q-value 0.536918
Overlap 15
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0351.1
Alt. Name DOT6
Database JASPAR_CORE_2009.meme
p-value 0.0109337
E-value 9.42486
q-value 0.536918
Overlap 20
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0056.1
Alt. Name MZF1_1-4
Database JASPAR_CORE_2009.meme
p-value 0.011258
E-value 9.70443
q-value 0.536918
Overlap 6
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0039.2
Alt. Name Klf4
Database JASPAR_CORE_2009.meme
p-value 0.0113265
E-value 9.76345
q-value 0.536918
Overlap 10
Offset -8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 9

 Previous Next Top

Summary 

Alignment 

Name UP00031_1
Alt. Name Zbtb3_primary
Database uniprobe_mouse.meme
p-value 8.30732e-05
E-value 0.0716091
q-value 0.143218
Overlap 8
Offset 4
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00102_2
Alt. Name Zic1_secondary
Database uniprobe_mouse.meme
p-value 0.00656994
E-value 5.66328
q-value 1
Overlap 8
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00006_2
Alt. Name Zic3_secondary
Database uniprobe_mouse.meme
p-value 0.00656994
E-value 5.66328
q-value 1
Overlap 8
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0385.1
Alt. Name SOK2
Database JASPAR_CORE_2009.meme
p-value 0.0110715
E-value 9.5436
q-value 1
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00031_2
Alt. Name Zbtb3_secondary
Database uniprobe_mouse.meme
p-value 0.0114184
E-value 9.84268
q-value 1
Overlap 8
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 10

 Previous Next Top

Summary 

Alignment 

Name MA0364.1
Alt. Name REI1
Database JASPAR_CORE_2009.meme
p-value 0.00125695
E-value 1.08349
q-value 1
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0086.1
Alt. Name sna
Database JASPAR_CORE_2009.meme
p-value 0.00267136
E-value 2.30271
q-value 1
Overlap 6
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00009_1
Alt. Name Nr2f2_primary
Database uniprobe_mouse.meme
p-value 0.0038726
E-value 3.33818
q-value 1
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0427.1
Alt. Name YJL103C
Database JASPAR_CORE_2009.meme
p-value 0.00423217
E-value 3.64813
q-value 1
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0160.1
Alt. Name NR4A2
Database JASPAR_CORE_2009.meme
p-value 0.00488085
E-value 4.20729
q-value 1
Overlap 8
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00053_1
Alt. Name Rxra_primary
Database uniprobe_mouse.meme
p-value 0.00565532
E-value 4.87489
q-value 1
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00079_2
Alt. Name Esrra_secondary
Database uniprobe_mouse.meme
p-value 0.00653104
E-value 5.62976
q-value 1
Overlap 11
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0380.1
Alt. Name SIP4
Database JASPAR_CORE_2009.meme
p-value 0.00693422
E-value 5.97729
q-value 1
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0112.2
Alt. Name ESR1
Database JASPAR_CORE_2009.meme
p-value 0.00706415
E-value 6.0893
q-value 1
Overlap 10
Offset 10
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0155.1
Alt. Name INSM1
Database JASPAR_CORE_2009.meme
p-value 0.0084781
E-value 7.30812
q-value 1
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0018.2
Alt. Name CREB1
Database JASPAR_CORE_2009.meme
p-value 0.00859757
E-value 7.4111
q-value 1
Overlap 7
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0016.1
Alt. Name usp
Database JASPAR_CORE_2009.meme
p-value 0.0103944
E-value 8.95999
q-value 1
Overlap 10
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00048_1
Alt. Name Rara_primary
Database uniprobe_mouse.meme
p-value 0.0104891
E-value 9.04163
q-value 1
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0103.1
Alt. Name ZEB1
Database JASPAR_CORE_2009.meme
p-value 0.0110515
E-value 9.52636
q-value 1
Overlap 6
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 11

 Previous Next Top

Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.000950495
E-value 0.819327
q-value 1
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0039.2
Alt. Name Klf4
Database JASPAR_CORE_2009.meme
p-value 0.00171264
E-value 1.4763
q-value 1
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00099_2
Alt. Name Ascl2_secondary
Database uniprobe_mouse.meme
p-value 0.00214515
E-value 1.84912
q-value 1
Overlap 13
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0270.1
Alt. Name AFT2
Database JASPAR_CORE_2009.meme
p-value 0.00344413
E-value 2.96884
q-value 1
Overlap 8
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00011_2
Alt. Name Irf6_secondary
Database uniprobe_mouse.meme
p-value 0.00412474
E-value 3.55553
q-value 1
Overlap 15
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0425.1
Alt. Name YGR067C
Database JASPAR_CORE_2009.meme
p-value 0.00429766
E-value 3.70458
q-value 1
Overlap 14
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00006_2
Alt. Name Zic3_secondary
Database uniprobe_mouse.meme
p-value 0.00475794
E-value 4.10135
q-value 1
Overlap 14
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00093_1
Alt. Name Klf7_primary
Database uniprobe_mouse.meme
p-value 0.00644346
E-value 5.55426
q-value 1
Overlap 13
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0450.1
Alt. Name hkb
Database JASPAR_CORE_2009.meme
p-value 0.00655292
E-value 5.64861
q-value 1
Overlap 9
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0002.2
Alt. Name RUNX1
Database JASPAR_CORE_2009.meme
p-value 0.00751072
E-value 6.47425
q-value 1
Overlap 9
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0006.1
Alt. Name Arnt::Ahr
Database JASPAR_CORE_2009.meme
p-value 0.00873757
E-value 7.53179
q-value 1
Overlap 6
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 12

 Previous Next Top

Summary 

Alignment 

Name UP00033_2
Alt. Name Zfp410_secondary
Database uniprobe_mouse.meme
p-value 0.00120205
E-value 1.03617
q-value 1
Overlap 15
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00043_2
Alt. Name Bcl6b_secondary
Database uniprobe_mouse.meme
p-value 0.00194441
E-value 1.67608
q-value 1
Overlap 15
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.2
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00195953
E-value 1.68912
q-value 1
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00408_2
Alt. Name Gabpa_secondary
Database uniprobe_mouse.meme
p-value 0.00272303
E-value 2.34725
q-value 1
Overlap 15
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00085_1
Alt. Name Sfpi1_primary
Database uniprobe_mouse.meme
p-value 0.00362197
E-value 3.12214
q-value 1
Overlap 14
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0068.1
Alt. Name Pax4
Database JASPAR_CORE_2009.meme
p-value 0.00444062
E-value 3.82782
q-value 1
Overlap 15
Offset 15
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0410.1
Alt. Name UGA3
Database JASPAR_CORE_2009.meme
p-value 0.0077667
E-value 6.6949
q-value 1
Overlap 8
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.010551
E-value 9.09494
q-value 1
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0145.1
Alt. Name Tcfcp2l1
Database JASPAR_CORE_2009.meme
p-value 0.0113356
E-value 9.77131
q-value 1
Overlap 13
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 13

 Previous Next Top

Summary 

Alignment 

Name UP00031_1
Alt. Name Zbtb3_primary
Database uniprobe_mouse.meme
p-value 0.00337036
E-value 2.90525
q-value 1
Overlap 12
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00103_1
Alt. Name Jundm2_primary
Database uniprobe_mouse.meme
p-value 0.00536077
E-value 4.62098
q-value 1
Overlap 14
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0333.1
Alt. Name MET31
Database JASPAR_CORE_2009.meme
p-value 0.00926097
E-value 7.98295
q-value 1
Overlap 9
Offset -1
Orientation Normal
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Summary 

Alignment 

Name UP00041_2
Alt. Name Foxj1_secondary
Database uniprobe_mouse.meme
p-value 0.0100995
E-value 8.70574
q-value 1
Overlap 14
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00032_2
Alt. Name Gata3_secondary
Database uniprobe_mouse.meme
p-value 0.0107098
E-value 9.23187
q-value 1
Overlap 15
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00020_1
Alt. Name Atf1_primary
Database uniprobe_mouse.meme
p-value 0.010809
E-value 9.31738
q-value 1
Overlap 14
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 14

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Summary 

Alignment 

Name MA0073.1
Alt. Name RREB1
Database JASPAR_CORE_2009.meme
p-value 0.000635398
E-value 0.547713
q-value 0.959968
Overlap 14
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00042_2
Alt. Name Gm397_secondary
Database uniprobe_mouse.meme
p-value 0.00147897
E-value 1.27488
q-value 0.959968
Overlap 14
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0359.1
Alt. Name RAP1
Database JASPAR_CORE_2009.meme
p-value 0.00167048
E-value 1.43995
q-value 0.959968
Overlap 10
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00034_2
Alt. Name Sox7_secondary
Database uniprobe_mouse.meme
p-value 0.00225215
E-value 1.94135
q-value 0.970675
Overlap 14
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0270.1
Alt. Name AFT2
Database JASPAR_CORE_2009.meme
p-value 0.00357419
E-value 3.08095
q-value 0.997062
Overlap 8
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00022_1
Alt. Name Zfp740_primary
Database uniprobe_mouse.meme
p-value 0.00390647
E-value 3.36738
q-value 0.997062
Overlap 14
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0162.1
Alt. Name Egr1
Database JASPAR_CORE_2009.meme
p-value 0.0041351
E-value 3.56445
q-value 0.997062
Overlap 11
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00036_2
Alt. Name Myf6_secondary
Database uniprobe_mouse.meme
p-value 0.00468212
E-value 4.03598
q-value 0.997062
Overlap 13
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00096_2
Alt. Name Sox13_secondary
Database uniprobe_mouse.meme
p-value 0.00520508
E-value 4.48678
q-value 0.997062
Overlap 14
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0332.1
Alt. Name MET28
Database JASPAR_CORE_2009.meme
p-value 0.00928694
E-value 8.00535
q-value 1
Overlap 5
Offset -9
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0039.2
Alt. Name Klf4
Database JASPAR_CORE_2009.meme
p-value 0.0106313
E-value 9.16418
q-value 1
Overlap 10
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 15

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Summary 

Alignment 

Name MA0205.1
Alt. Name Trl
Database JASPAR_CORE_2009.meme
p-value 0.00128826
E-value 1.11048
q-value 1
Overlap 10
Offset -8
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name UP00033_2
Alt. Name Zfp410_secondary
Database uniprobe_mouse.meme
p-value 0.00442431
E-value 3.81375
q-value 1
Overlap 16
Offset -5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00011_2
Alt. Name Irf6_secondary
Database uniprobe_mouse.meme
p-value 0.00498912
E-value 4.30062
q-value 1
Overlap 13
Offset -8
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 16

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Summary 

Alignment 

Name MA0021.1
Alt. Name Dof3
Database JASPAR_CORE_2009.meme
p-value 0.00256055
E-value 2.20719
q-value 1
Overlap 6
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0114.1
Alt. Name HNF4A
Database JASPAR_CORE_2009.meme
p-value 0.00378988
E-value 3.26688
q-value 1
Overlap 8
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00001_2
Alt. Name E2F2_secondary
Database uniprobe_mouse.meme
p-value 0.00509436
E-value 4.39134
q-value 1
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0332.1
Alt. Name MET28
Database JASPAR_CORE_2009.meme
p-value 0.00676839
E-value 5.83436
q-value 1
Overlap 6
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0138.1
Alt. Name REST
Database JASPAR_CORE_2009.meme
p-value 0.00927468
E-value 7.99477
q-value 1
Overlap 8
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00066_2
Alt. Name Hnf4a_secondary
Database uniprobe_mouse.meme
p-value 0.00967811
E-value 8.34253
q-value 1
Overlap 8
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0335.1
Alt. Name MET4
Database JASPAR_CORE_2009.meme
p-value 0.010238
E-value 8.82518
q-value 1
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0050.1
Alt. Name IRF1
Database JASPAR_CORE_2009.meme
p-value 0.0103781
E-value 8.94596
q-value 1
Overlap 7
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0247.1
Alt. Name tin
Database JASPAR_CORE_2009.meme
p-value 0.0106845
E-value 9.21003
q-value 1
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 17

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Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00834332
E-value 7.19195
q-value 1
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 18

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Summary 

Alignment 

Name MA0268.1
Alt. Name ADR1
Database JASPAR_CORE_2009.meme
p-value 0.000785728
E-value 0.677298
q-value 0.337656
Overlap 7
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0436.1
Alt. Name YPR022C
Database JASPAR_CORE_2009.meme
p-value 0.000850068
E-value 0.732759
q-value 0.337656
Overlap 7
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00099_2
Alt. Name Ascl2_secondary
Database uniprobe_mouse.meme
p-value 0.00101429
E-value 0.874322
q-value 0.337656
Overlap 11
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00114203
E-value 0.984434
q-value 0.337656
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.2
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00136832
E-value 1.17949
q-value 0.337656
Overlap 9
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0056.1
Alt. Name MZF1_1-4
Database JASPAR_CORE_2009.meme
p-value 0.00140555
E-value 1.21158
q-value 0.337656
Overlap 6
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0337.1
Alt. Name MIG1
Database JASPAR_CORE_2009.meme
p-value 0.00145618
E-value 1.25523
q-value 0.337656
Overlap 7
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0339.1
Alt. Name MIG3
Database JASPAR_CORE_2009.meme
p-value 0.00156903
E-value 1.3525
q-value 0.337656
Overlap 7
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0338.1
Alt. Name MIG2
Database JASPAR_CORE_2009.meme
p-value 0.00181848
E-value 1.56753
q-value 0.347856
Overlap 7
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0431.1
Alt. Name YML081W
Database JASPAR_CORE_2009.meme
p-value 0.00323685
E-value 2.79017
q-value 0.557259
Overlap 9
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0425.1
Alt. Name YGR067C
Database JASPAR_CORE_2009.meme
p-value 0.00403764
E-value 3.48045
q-value 0.63193
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00021_1
Alt. Name Zfp281_primary
Database uniprobe_mouse.meme
p-value 0.005309
E-value 4.57636
q-value 0.716922
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0350.1
Alt. Name TOD6
Database JASPAR_CORE_2009.meme
p-value 0.00541353
E-value 4.66647
q-value 0.716922
Overlap 11
Offset 10
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0344.1
Alt. Name NHP10
Database JASPAR_CORE_2009.meme
p-value 0.00636052
E-value 5.48277
q-value 0.756374
Overlap 8
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00239_1
Alt. Name Obox2_3438.2
Database uniprobe_mouse.meme
p-value 0.00659012
E-value 5.68069
q-value 0.756374
Overlap 10
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0023.1
Alt. Name dl_2
Database JASPAR_CORE_2009.meme
p-value 0.00772869
E-value 6.66213
q-value 0.796817
Overlap 6
Offset -5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0351.1
Alt. Name DOT6
Database JASPAR_CORE_2009.meme
p-value 0.00786816
E-value 6.78236
q-value 0.796817
Overlap 11
Offset 10
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0335.1
Alt. Name MET4
Database JASPAR_CORE_2009.meme
p-value 0.00899195
E-value 7.75106
q-value 0.829571
Overlap 8
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0373.1
Alt. Name RPN4
Database JASPAR_CORE_2009.meme
p-value 0.00915531
E-value 7.89188
q-value 0.829571
Overlap 7
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0341.1
Alt. Name MSN2
Database JASPAR_CORE_2009.meme
p-value 0.0100207
E-value 8.63787
q-value 0.862589
Overlap 5
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00160_1
Alt. Name Obox3_3439.1
Database uniprobe_mouse.meme
p-value 0.011543
E-value 9.95006
q-value 0.94631
Overlap 10
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 19

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Summary 

Alignment 

Name UP00036_2
Alt. Name Myf6_secondary
Database uniprobe_mouse.meme
p-value 7.13343e-05
E-value 0.0614902
q-value 0.12298
Overlap 15
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0270.1
Alt. Name AFT2
Database JASPAR_CORE_2009.meme
p-value 0.00103201
E-value 0.889592
q-value 0.889592
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0068.1
Alt. Name Pax4
Database JASPAR_CORE_2009.meme
p-value 0.00226391
E-value 1.95149
q-value 1
Overlap 15
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00041_2
Alt. Name Foxj1_secondary
Database uniprobe_mouse.meme
p-value 0.00288301
E-value 2.48515
q-value 1
Overlap 14
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0079.1
Alt. Name SP1
Database JASPAR_CORE_2009.meme
p-value 0.00635234
E-value 5.47572
q-value 1
Overlap 9
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0268.1
Alt. Name ADR1
Database JASPAR_CORE_2009.meme
p-value 0.00686659
E-value 5.919
q-value 1
Overlap 5
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0372.1
Alt. Name RPH1
Database JASPAR_CORE_2009.meme
p-value 0.00907247
E-value 7.82047
q-value 1
Overlap 5
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00036_1
Alt. Name Myf6_primary
Database uniprobe_mouse.meme
p-value 0.00987125
E-value 8.50902
q-value 1
Overlap 15
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 20

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Summary 

Alignment 

Name MA0152.1
Alt. Name NFATC2
Database JASPAR_CORE_2009.meme
p-value 0.00102831
E-value 0.8864
q-value 0.895214
Overlap 7
Offset -2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MA0137.2
Alt. Name STAT1
Database JASPAR_CORE_2009.meme
p-value 0.00135767
E-value 1.17031
q-value 0.895214
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00007_2
Alt. Name Egr1_secondary
Database uniprobe_mouse.meme
p-value 0.0015578
E-value 1.34282
q-value 0.895214
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0085.1
Alt. Name Su(H)
Database JASPAR_CORE_2009.meme
p-value 0.00268737
E-value 2.31651
q-value 1
Overlap 11
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0282.1
Alt. Name CEP3
Database JASPAR_CORE_2009.meme
p-value 0.00303291
E-value 2.61437
q-value 1
Overlap 8
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0088.1
Alt. Name znf143
Database JASPAR_CORE_2009.meme
p-value 0.00358861
E-value 3.09339
q-value 1
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00031_2
Alt. Name Zbtb3_secondary
Database uniprobe_mouse.meme
p-value 0.00534902
E-value 4.61085
q-value 1
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00096_2
Alt. Name Sox13_secondary
Database uniprobe_mouse.meme
p-value 0.00707321
E-value 6.0971
q-value 1
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0331.1
Alt. Name MCM1
Database JASPAR_CORE_2009.meme
p-value 0.00922184
E-value 7.94923
q-value 1
Overlap 8
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0137.1
Alt. Name STAT1
Database JASPAR_CORE_2009.meme
p-value 0.0101676
E-value 8.7645
q-value 1
Overlap 8
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0102.2
Alt. Name CEBPA
Database JASPAR_CORE_2009.meme
p-value 0.0108303
E-value 9.33573
q-value 1
Overlap 9
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MA0391.1
Alt. Name STB4
Database JASPAR_CORE_2009.meme
p-value 0.0111236
E-value 9.58858
q-value 1
Overlap 7
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UP00408_2
Alt. Name Gabpa_secondary
Database uniprobe_mouse.meme
p-value 0.0113479
E-value 9.78192
q-value 1
Overlap 11
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]
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TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.250   C: 0.250   G: 0.250   T: 0.250

Result calculation took 76.625 seconds
show model parameters...

Explanation of TOMTOM Results

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The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.