The Run Menu

This menu is used for running external programs on UNIX. Each external program in the menu has a "run" menu item and a "set options" menu item. Taking blast as an example, selecting the "Run blast on selected features" item will attempt to run a script called run_blast. There is a corresponding script for fasta called run_fasta. These scripts will almost certainly need to be changed to reflect the paths and databases that are configured at each site.