The buttons in this menu are toggles. "Show Base View" and "Show Feature List" default to on/active, while the others default to off/inactive. The graphs and plots in Artemis are described in detail in the section called Graphs and Plots.
This toggle controls whether the base view is visible. (see the section called The Overview and DNA Views). [Default: on]
This toggle controls whether the feature view is visible. (see the section called The Feature List). [Default: on]
Controls whether the GC content plot is visible. This is a graph of the average GC content of a moving window (default size 120 base), across the bases visible in the overview window. [Default: off]
Controls whether the AG content plot is visible. This is a graph of the average AG content of a moving window (default size 120 base), across the bases visible in the overview window. [Default: off]
Controls whether the GC frame plot is visible. This graph is similar to the GC content graph but shows the GC content of the first, second and third position independently. For more information on the algorithm and on how to interpret the result see this web page. [Default: off]
Controls whether the (forward) correlation scores plot is visible. The graph shows the correlation between the amino acid composition of the globular proteins in TREMBL and the composition of the base translation in each of the three reading frames. The green line represents forward frame 1, blue represents frame 2 and red represents frame 3. [Default: off]
This does the same as "Correlation Scores", but does the calculation on the reverse strand. The green line represents reverse frame 1 (the bottom frame line), blue represents frame 2 and red represents frame 3. [Default: off]
[Default: off]
[Default: off]