Uses of Class
uk.ac.sanger.cgp.standalonecsa.beans.ExperimentBean

Packages that use ExperimentBean
uk.ac.sanger.cgp.standalonecsa.beans The beans used by Standalone AutoCSA. 
uk.ac.sanger.cgp.standalonecsa.interfaces The service interface classes used in Standalone AutoCSA. 
uk.ac.sanger.cgp.standalonecsa.services The implementations of the services used in Standalone AutoCSA. 
uk.ac.sanger.cgp.standalonecsa.util The utility classes used in Standalone AutoCSA. 
 

Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.beans
 

Methods in uk.ac.sanger.cgp.standalonecsa.beans that return ExperimentBean
 ExperimentBean TraceGroupBean.getBestAntisenseWildtype()
          Get the best antisense/reverse wildtype ExperimentBean.
 ExperimentBean TraceGroupBean.getBestSenseWildtype()
          Get the best sense/forward wildtype ExperimentBean.
 ExperimentBean ExperimentBean.getComplimentExp()
          The ExperimentBean of any compliment experiment, requires correct use of runNumber for experiment pairing.
 

Methods in uk.ac.sanger.cgp.standalonecsa.beans with parameters of type ExperimentBean
 void TraceGroupBean.setBestAntisenseWildtype(ExperimentBean bestAntisenseWildtype)
          Set the best antisense/reverse wildtype ExperimentBean.
 void TraceGroupBean.setBestSenseWildtype(ExperimentBean bestSenseWildtype)
          Set the best sense/forward wildtype ExperimentBean.
 void ExperimentBean.setComplimentExp(ExperimentBean complimentExp)
          Set the ExperimentBean of any compliment experiment, requires correct use of runNumber for experiment pairing.
 

Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.interfaces
 

Methods in uk.ac.sanger.cgp.standalonecsa.interfaces with parameters of type ExperimentBean
 java.awt.image.BufferedImage ChromatogramService.generateComplexVariantView(java.lang.String pathRoot, ExperimentBean expBean, ExperimentBean wtExp, boolean drawBaseChar, boolean writeToFile)
          Generates images required for the complex variant view.
 java.awt.image.BufferedImage ChromatogramService.generateFullChrom(java.lang.String imageLoc, ExperimentBean expBean, boolean writeImage, boolean drawBaseChar)
          Generates a full chromatogram image.
 java.awt.image.BufferedImage[] ChromatogramService.generateVariantViewSet(java.lang.String imageLoc, ExperimentBean expBean, ExperimentBean normExp, boolean drawBaseChar, boolean writeToFile)
          Generates images required for the simple variant view.
 java.awt.image.BufferedImage ChromatogramService.generateVariantViewSingle(java.lang.String pathRoot, ExperimentBean expBean, boolean writeToFile, boolean drawBaseChar)
          Generates an image as used in the simple variant view.
 

Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.services
 

Methods in uk.ac.sanger.cgp.standalonecsa.services with parameters of type ExperimentBean
 java.awt.image.BufferedImage ChromatogramServiceImpl.generateComplexVariantView(java.lang.String pathRoot, ExperimentBean expBean, ExperimentBean wtExp, boolean drawBaseChar, boolean writeToFile)
           
 java.awt.image.BufferedImage ChromatogramServiceImpl.generateFullChrom(java.lang.String pathStub, ExperimentBean expBean, boolean writeImage, boolean drawBaseChar)
           
 java.awt.image.BufferedImage[] ChromatogramServiceImpl.generateVariantViewSet(java.lang.String pathRoot, ExperimentBean expBean, ExperimentBean wtExp, boolean drawBaseChar, boolean writeToFile)
           
 java.awt.image.BufferedImage ChromatogramServiceImpl.generateVariantViewSingle(java.lang.String pathRoot, ExperimentBean expBean, boolean writeToFile, boolean drawBaseChar)
           
 

Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.util
 

Methods in uk.ac.sanger.cgp.standalonecsa.util that return ExperimentBean
static ExperimentBean FileHandler.experimentFromFile(java.io.File file, boolean loadChromatogram)
           
 

Methods in uk.ac.sanger.cgp.standalonecsa.util with parameters of type ExperimentBean
protected static void FileHandler.getChromatogram(ExperimentBean eb)