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java.lang.Objectuk.ac.sanger.cgp.standalonecsa.services.ViewServiceImpl
public class ViewServiceImpl
This method handles all things view related. This includes generation of chromatograms and html output.
Field Summary | |
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protected ChromatogramService |
cs
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protected static org.apache.commons.logging.Log |
log
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Constructor Summary | |
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ViewServiceImpl()
Creates a new instance of FileLocatorServiceImpl |
Method Summary | |
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void |
renderAmplimer(AmplimerBean amp)
Generates the amplimer html page. |
java.io.File |
renderIndex(java.util.Map amplimers,
java.lang.String csvLoc)
Generates the index html page. |
void |
renderTraceInfo(TraceGroupBean tgb)
Generates variant trace html page. |
void |
renderTraceSummary(TraceGroupBean tgb)
Generates the variant trace summary html page. |
void |
renderVariantTraceResults(TraceGroupBean traceGroup)
Generate the called variant html pages. |
void |
renderWildtypePanel(TraceGroupBean tgb)
Generates wildtype trace html page. |
void |
resetService()
Resets the chromatogram service. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected static final org.apache.commons.logging.Log log
protected ChromatogramService cs
Constructor Detail |
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public ViewServiceImpl()
Method Detail |
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public void renderTraceInfo(TraceGroupBean tgb)
ViewService
renderTraceInfo
in interface ViewService
tgb
- the TraceGroup to get the traces frompublic void renderTraceSummary(TraceGroupBean tgb)
ViewService
renderTraceSummary
in interface ViewService
tgb
- the TraceGroup to get the traces frompublic void renderWildtypePanel(TraceGroupBean tgb)
ViewService
renderWildtypePanel
in interface ViewService
tgb
- the TraceGroup to get the traces frompublic java.io.File renderIndex(java.util.Map amplimers, java.lang.String csvLoc)
ViewService
renderIndex
in interface ViewService
amplimers
- map of amplimerName and number of variants foundcsvLoc
- the location of the results.csv file
public void renderAmplimer(AmplimerBean amp)
ViewService
renderAmplimer
in interface ViewService
amp
- the amplimer to be rendered as htmlpublic void renderVariantTraceResults(TraceGroupBean traceGroup)
ViewService
renderVariantTraceResults
in interface ViewService
traceGroup
- the trace group to get the variant traces frompublic void resetService()
ViewService
ChromatogramService.resetPreviousRendered()
.
resetService
in interface ViewService
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