uk.ac.sanger.cgp.standalonecsa.beans
Class ChromRenderBean
java.lang.Object
uk.ac.sanger.cgp.standalonecsa.beans.ChromRenderBean
public class ChromRenderBean
- extends java.lang.Object
- Author:
- Original: kr2, $Author: kr2 $
Field Summary |
protected static org.apache.commons.logging.Log |
log
|
Constructor Summary |
ChromRenderBean(org.biojava.bio.chromatogram.Chromatogram chrom,
int coverageStart,
int coverageStop,
int renderStart,
int renderStop,
java.util.List scans,
java.lang.String seq)
Creates a new instance of ChromRenderBean |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
log
protected static final org.apache.commons.logging.Log log
ChromRenderBean
public ChromRenderBean(org.biojava.bio.chromatogram.Chromatogram chrom,
int coverageStart,
int coverageStop,
int renderStart,
int renderStop,
java.util.List scans,
java.lang.String seq)
- Creates a new instance of ChromRenderBean
getTraceCoverageStart
public int getTraceCoverageStart()
getTraceCoverageStop
public int getTraceCoverageStop()
getStartRenderAtBase
public int getStartRenderAtBase()
getStopRenderAtBase
public int getStopRenderAtBase()
getPerBaseScans
public java.util.List getPerBaseScans()
getAmplimerSeq
public java.lang.String getAmplimerSeq()
getFeatures
public java.util.List getFeatures()
addFeature
public void addFeature(FeatureBean feat)
getChromatogram
public org.biojava.bio.chromatogram.Chromatogram getChromatogram()
toString
public java.lang.String toString()
- Overrides:
toString
in class java.lang.Object