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java.lang.Objectorg.biojava.bio.chromatogram.AbstractChromatogram
org.biojava.bio.program.abi.ABIFChromatogram
uk.ac.sanger.cgp.standalonecsa.util.FileHandler
public class FileHandler
Nested Class Summary |
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Nested classes/interfaces inherited from class org.biojava.bio.program.abi.ABIFChromatogram |
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org.biojava.bio.program.abi.ABIFChromatogram.Parser |
Field Summary | |
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protected static FileProcessingInfoBean |
fileComponentBean
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protected static org.apache.commons.logging.Log |
log
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Fields inherited from interface org.biojava.bio.chromatogram.Chromatogram |
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DNA, OFFSETS |
Constructor Summary | |
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protected |
FileHandler()
Creates a new instance of FileHandler |
Method Summary | |
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static boolean |
createOutputDirs(java.io.File outputLocation,
boolean isPath)
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static ExperimentBean |
experimentFromFile(java.io.File file,
boolean loadChromatogram)
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protected static void |
getChromatogram(ExperimentBean eb)
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Methods inherited from class org.biojava.bio.program.abi.ABIFChromatogram |
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create, create, load, load, reverseComplementInstance |
Methods inherited from class org.biojava.bio.chromatogram.AbstractChromatogram |
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clearTraces, createImmutableAlignment, createImmutableSymbolList, getBaseCalls, getMax, getMax, getSequenceLength, getSignificantBits, getTrace, getTraceLength, reverse, reverseComplement, reverseComplementBaseCallList, reverseComplementBaseCalls, setBaseCallAlignment, setBits, setTrace |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected static final FileProcessingInfoBean fileComponentBean
protected static final org.apache.commons.logging.Log log
Constructor Detail |
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protected FileHandler()
Method Detail |
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public static ExperimentBean experimentFromFile(java.io.File file, boolean loadChromatogram)
protected static void getChromatogram(ExperimentBean eb)
public static boolean createOutputDirs(java.io.File outputLocation, boolean isPath)
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