uk.ac.sanger.cgp.standalonecsa.beans
Class ChromRenderBean

java.lang.Object
  extended by uk.ac.sanger.cgp.standalonecsa.beans.ChromRenderBean

public class ChromRenderBean
extends java.lang.Object

Author:
Original: kr2, $Author: kr2 $

Field Summary
protected static org.apache.commons.logging.Log log
           
 
Constructor Summary
ChromRenderBean(org.biojava.bio.chromatogram.Chromatogram chrom, int coverageStart, int coverageStop, int renderStart, int renderStop, java.util.List scans, java.lang.String seq)
          Creates a new instance of ChromRenderBean
 
Method Summary
 void addFeature(FeatureBean feat)
           
 java.lang.String getAmplimerSeq()
           
 org.biojava.bio.chromatogram.Chromatogram getChromatogram()
           
 java.util.List getFeatures()
           
 java.util.List getPerBaseScans()
           
 int getStartRenderAtBase()
           
 int getStopRenderAtBase()
           
 int getTraceCoverageStart()
           
 int getTraceCoverageStop()
           
 java.lang.String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

log

protected static final org.apache.commons.logging.Log log
Constructor Detail

ChromRenderBean

public ChromRenderBean(org.biojava.bio.chromatogram.Chromatogram chrom,
                       int coverageStart,
                       int coverageStop,
                       int renderStart,
                       int renderStop,
                       java.util.List scans,
                       java.lang.String seq)
Creates a new instance of ChromRenderBean

Method Detail

getTraceCoverageStart

public int getTraceCoverageStart()

getTraceCoverageStop

public int getTraceCoverageStop()

getStartRenderAtBase

public int getStartRenderAtBase()

getStopRenderAtBase

public int getStopRenderAtBase()

getPerBaseScans

public java.util.List getPerBaseScans()

getAmplimerSeq

public java.lang.String getAmplimerSeq()

getFeatures

public java.util.List getFeatures()

addFeature

public void addFeature(FeatureBean feat)

getChromatogram

public org.biojava.bio.chromatogram.Chromatogram getChromatogram()

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object