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public interface AnalysisService
This interface controls access to analysis implementations.
Method Summary | |
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void |
analyseTraceGroup(TraceGroupBean tgb)
Performs trace analysis over all experiments in the TraceGroupBean. |
void |
annotateVar(uk.ac.sanger.cgp.autocsa.beans.Mutation var,
AmplimerBean amplimer)
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void |
cdsTranslation(CdsBean cds)
Completes the setup of the CdsBean. |
void |
compareTraceGroup(TraceGroupBean tgb)
Performs comparisons over all valid experiments in the TraceGroupBean. |
java.lang.String |
revCompDna(java.lang.String dnaSeq)
Performs reverse compliment translation of a DNA string. |
Method Detail |
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void analyseTraceGroup(TraceGroupBean tgb)
tgb
- the trace group to be analysedvoid compareTraceGroup(TraceGroupBean tgb)
Constants.Zygosity.HETEROZYGOUS_TO_CHANGE
to
Constants.Zygosity.HETEROZYGOUS
tgb
- the trace group to perform comparisons onvoid cdsTranslation(CdsBean cds)
cds
- the CdsBean to have protein translation performedjava.lang.String revCompDna(java.lang.String dnaSeq)
dnaSeq
- the DNA sequence to be reverse complimented
void annotateVar(uk.ac.sanger.cgp.autocsa.beans.Mutation var, AmplimerBean amplimer)
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