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java.lang.Objectuk.ac.sanger.cgp.standalonecsa.jabawat.JabawatResults
public class JabawatResults
When an object of this is created it is used to hold the results and other info from the jabawat program.
Constructor Summary | |
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JabawatResults()
Creates a new instance of JabawatResults |
Method Summary | |
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int[] |
getCoords(int i)
gets the coordinates of a specific hit. |
java.util.List |
getCoordsList()
Retrieves the Coordinates list object. |
int |
getHits()
Retrieves the number of hits from the object. |
java.lang.String |
getKey()
Gets the name of the sequence. |
java.lang.String |
getOutcome()
Retrieves the direction of the query. |
void |
setHits(int hits)
Adds the number of hits to the object. |
void |
setKey(java.lang.String key)
Adds the name of the query to the object. |
void |
setOutcome(java.lang.String outcome)
Adds the direction of the query to the object. |
void |
storeCoords(int start,
int stop)
Stores the coordinates within the object. |
java.lang.String |
toString()
returns a string of the contents of the object. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public JabawatResults()
Method Detail |
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public java.lang.String getKey()
public void setKey(java.lang.String key)
key
- The name.public java.util.List getCoordsList()
public java.lang.String getOutcome()
public void setOutcome(java.lang.String outcome)
outcome
- The direction.public void storeCoords(int start, int stop)
start
- The min coord.stop
- The max coord.public int[] getCoords(int i)
i
- The hit number for the coordinates.
public int getHits()
public void setHits(int hits)
hits
- number of hits.public java.lang.String toString()
toString
in class java.lang.Object
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