Uses of Class
uk.ac.sanger.cgp.standalonecsa.beans.TraceGroupBean

Packages that use TraceGroupBean
uk.ac.sanger.cgp.standalonecsa.interfaces The service interface classes used in Standalone AutoCSA. 
uk.ac.sanger.cgp.standalonecsa.services The implementations of the services used in Standalone AutoCSA. 
 

Uses of TraceGroupBean in uk.ac.sanger.cgp.standalonecsa.interfaces
 

Methods in uk.ac.sanger.cgp.standalonecsa.interfaces that return TraceGroupBean
 TraceGroupBean FileLocatorService.getAmplimerGroup(java.util.List files, AmplimerBean amplimer)
          Constructs a TraceGroupBean for the specified amplimer.
 

Methods in uk.ac.sanger.cgp.standalonecsa.interfaces with parameters of type TraceGroupBean
 void AnalysisService.analyseTraceGroup(TraceGroupBean tgb)
          Performs trace analysis over all experiments in the TraceGroupBean.
 void AnalysisService.compareTraceGroup(TraceGroupBean tgb)
          Performs comparisons over all valid experiments in the TraceGroupBean.
 void FlaggingService.flagTraceGroup(TraceGroupBean traceGroup)
          Performs variant flagging.
 void ViewService.renderTraceInfo(TraceGroupBean tgb)
          Generates variant trace html page.
 void ViewService.renderTraceSummary(TraceGroupBean tgb)
          Generates the variant trace summary html page.
 void ViewService.renderVariantTraceResults(TraceGroupBean traceGroup)
          Generate the called variant html pages.
 void ViewService.renderWildtypePanel(TraceGroupBean tgb)
          Generates wildtype trace html page.
 

Uses of TraceGroupBean in uk.ac.sanger.cgp.standalonecsa.services
 

Methods in uk.ac.sanger.cgp.standalonecsa.services that return TraceGroupBean
 TraceGroupBean FileLocatorServiceImpl.getAmplimerGroup(java.util.List files, AmplimerBean amplimer)
           
 

Methods in uk.ac.sanger.cgp.standalonecsa.services with parameters of type TraceGroupBean
 void AnalysisServiceImpl.analyseTraceGroup(TraceGroupBean tgb)
           
 void AnalysisServiceImpl.compareTraceGroup(TraceGroupBean tgb)
           
 void FlaggingServiceImpl.flagTraceGroup(TraceGroupBean traceGroup)
           
 void ViewServiceImpl.renderTraceInfo(TraceGroupBean tgb)
           
 void ViewServiceImpl.renderTraceSummary(TraceGroupBean tgb)
           
 void ViewServiceImpl.renderVariantTraceResults(TraceGroupBean traceGroup)
           
 void ViewServiceImpl.renderWildtypePanel(TraceGroupBean tgb)