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Package uk.ac.sanger.cgp.standalonecsa.beans |
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Class uk.ac.sanger.cgp.standalonecsa.beans.AmplimerBean extends java.lang.Object implements Serializable |
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Serialized Fields |
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java.lang.String amplimerName
java.lang.String amplimer
java.lang.Integer ampLength
java.lang.Integer roiStart
java.lang.Integer roiStop
java.lang.Integer codingStartIndex
java.lang.Integer codingStopIndex
java.lang.String mapsToCds
java.lang.Integer cdsStartIndex
java.lang.Boolean amplimerReversed
CdsBean cds
java.lang.Integer codingStart
java.lang.Integer codingStop
java.lang.Integer cdsStart
Class uk.ac.sanger.cgp.standalonecsa.beans.CdsBean extends java.lang.Object implements Serializable |
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Serialized Fields |
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java.lang.String name
java.lang.String cdsSeq
boolean senseTranslated
java.lang.String proteinSeq
Package uk.ac.sanger.cgp.standalonecsa.exceptions |
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Class uk.ac.sanger.cgp.standalonecsa.exceptions.CsaRenderException extends java.lang.Exception implements Serializable |
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Class uk.ac.sanger.cgp.standalonecsa.exceptions.CsaRuntimeAlignmentException extends java.lang.RuntimeException implements Serializable |
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Class uk.ac.sanger.cgp.standalonecsa.exceptions.CsaRuntimeException extends java.lang.RuntimeException implements Serializable |
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Package uk.ac.sanger.cgp.standalonecsa.gui |
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Class uk.ac.sanger.cgp.standalonecsa.gui.SetupBase extends javax.swing.JDialog implements Serializable |
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Serialized Fields |
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int currentDisplayNum
javax.swing.JButton addAmpButton
javax.swing.JTextField ampField
javax.swing.JTextPane ampInfoTextPanel
javax.swing.JLabel ampLabel
javax.swing.JTextField ampNameField
javax.swing.JLabel ampNameLabel
javax.swing.JTextArea ampPropText
javax.swing.JTextField ampSeqField
javax.swing.JScrollPane amplimerInfoPane
javax.swing.JPanel amplimerPanel
javax.swing.JPanel amplimerPropPanel
javax.swing.JButton answerButton
javax.swing.JTextField answerField
javax.swing.JLabel answerLabel
javax.swing.JTextField antiField
javax.swing.JLabel antiLabel
javax.swing.JButton backRootButton
javax.swing.JButton cancelRootButton
javax.swing.JTextPane componentTextPane
javax.swing.JTextField delimField
javax.swing.JLabel delimLabel
javax.swing.JTextField directField
javax.swing.JLabel directLabel
javax.swing.JTextField dnaField
javax.swing.JLabel dnaLabel
javax.swing.JTextField exampleField
javax.swing.JLabel exampleLabel
javax.swing.JTextField extField
javax.swing.JLabel extLabel
javax.swing.JTextArea fieldHelpPane
javax.swing.JLabel fileChooserInfoLable
javax.swing.JPanel fileConventionPanel
javax.swing.JEditorPane fileInfoPane
javax.swing.JLabel fileSelLabel
javax.swing.JTextField grpField
javax.swing.JLabel grpLabel
javax.swing.JPanel helpPanel
javax.swing.JButton inDirButton
javax.swing.JTextField inDirField
javax.swing.JLabel inDirLabel
javax.swing.JPanel inputOutputPanel
javax.swing.JLabel jLabel1
javax.swing.JLabel jLabel3
javax.swing.JPanel jPanel1
javax.swing.JPanel jPanel2
javax.swing.JPanel jPanel3
javax.swing.JScrollPane jScrollPane1
javax.swing.JScrollPane jScrollPane2
javax.swing.JScrollPane jScrollPane3
javax.swing.JScrollPane jScrollPane4
javax.swing.JScrollPane jScrollPane6
javax.swing.JPanel mainPanel
javax.swing.JSeparator mainPanelSeperator
javax.swing.JPanel newAmplimerPanel
javax.swing.JButton nextRootButton
javax.swing.JButton outDirButton
javax.swing.JTextField outDirField
javax.swing.JLabel outDirLabel
javax.swing.JTextPane questionTextPane
javax.swing.JTextField roiStartField
javax.swing.JLabel roiStartLabel
javax.swing.JTextField roiStopField
javax.swing.JLabel roiStopLabel
javax.swing.JTextField senseField
javax.swing.JLabel senseLabel
javax.swing.JButton seqFileBrowseButton
javax.swing.JTextField seqFileField
javax.swing.JLabel seqLabel
javax.swing.JPanel welcomePanel
javax.swing.JScrollPane welcomeScrollPane
javax.swing.JTextPane welcomeTextPane
javax.swing.JTextField wtField
javax.swing.JLabel wtLabel
javax.swing.JTextField wtPosField
javax.swing.JLabel wtPosLabel
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