Uses of Class
uk.ac.sanger.cgp.standalonecsa.jabawat.JabawatResults

Packages that use JabawatResults
uk.ac.sanger.cgp.standalonecsa.jabawat The core of the alignment system used in Standalone AutoCSA. 
 

Uses of JabawatResults in uk.ac.sanger.cgp.standalonecsa.jabawat
 

Methods in uk.ac.sanger.cgp.standalonecsa.jabawat that return JabawatResults
static JabawatResults Jabawat.runJabawat(java.lang.String target, java.lang.String query, JabawatResults jr, int mismatches)
          Runs the core of the JaBaWAT alignment program using two strings representing the sequences.
 

Methods in uk.ac.sanger.cgp.standalonecsa.jabawat with parameters of type JabawatResults
static JabawatResults Jabawat.runJabawat(java.lang.String target, java.lang.String query, JabawatResults jr, int mismatches)
          Runs the core of the JaBaWAT alignment program using two strings representing the sequences.