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java.lang.Objectuk.ac.sanger.cgp.standalonecsa.beans.TraceGroupBean
public class TraceGroupBean
This object is used to group the variant and wildtype experiments by amplimer. It also indicates which wildtype traces have been chosen as best normals.
Constructor Summary | |
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TraceGroupBean()
Creates a new instance of TraceGroupBean |
Method Summary | |
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AmplimerBean |
getAmplimerData()
Get the AmplimerBean assosiated with this TraceGroupBean. |
ExperimentBean |
getBestAntisenseWildtype()
Get the best antisense/reverse wildtype ExperimentBean. |
ExperimentBean |
getBestSenseWildtype()
Get the best sense/forward wildtype ExperimentBean. |
java.util.TreeSet |
getVariantTraces()
Get the set of variant traces. |
java.util.TreeSet |
getWildtypeTraces()
Get the set of wildtype traces. |
void |
markBestNormals()
Marks the ExperimentBeans held as best[Sense|Antisense]Wildtype as best normal. |
void |
setAmplimerData(AmplimerBean amplimerData)
Set the AmplimerBean assosiated with this TraceGroupBean. |
void |
setBestAntisenseWildtype(ExperimentBean bestAntisenseWildtype)
Set the best antisense/reverse wildtype ExperimentBean. |
void |
setBestSenseWildtype(ExperimentBean bestSenseWildtype)
Set the best sense/forward wildtype ExperimentBean. |
void |
setVariantTraces(java.util.TreeSet variantTraces)
Set the new set of variant traces. |
void |
setWildtypeTraces(java.util.TreeSet wildtypeTraces)
Set the new set of wildtype traces. |
java.lang.String |
toString()
Get a string representation for this object. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public TraceGroupBean()
Method Detail |
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public void markBestNormals()
ExperimentBean.setBest(boolean best)
.
public java.util.TreeSet getVariantTraces()
public void setVariantTraces(java.util.TreeSet variantTraces)
variantTraces
- the new set of variant ExperimentBeanspublic java.util.TreeSet getWildtypeTraces()
public void setWildtypeTraces(java.util.TreeSet wildtypeTraces)
wildtypeTraces
- the new set of wildtype ExperimentBeanspublic ExperimentBean getBestSenseWildtype()
public void setBestSenseWildtype(ExperimentBean bestSenseWildtype)
bestSenseWildtype
- the best sense/forward wildtype ExperimentBean.public ExperimentBean getBestAntisenseWildtype()
public void setBestAntisenseWildtype(ExperimentBean bestAntisenseWildtype)
bestAntisenseWildtype
- the best antisense/reverse wildtype ExperimentBean.public AmplimerBean getAmplimerData()
AmplimerBean
assosiated with this TraceGroupBean.
public void setAmplimerData(AmplimerBean amplimerData)
AmplimerBean
assosiated with this TraceGroupBean.
amplimerData
- the AmplimerBean for this grouppublic java.lang.String toString()
toString
in class java.lang.Object
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