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Packages that use ExperimentBean | |
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uk.ac.sanger.cgp.standalonecsa.beans | The beans used by Standalone AutoCSA. |
uk.ac.sanger.cgp.standalonecsa.interfaces | The service interface classes used in Standalone AutoCSA. |
uk.ac.sanger.cgp.standalonecsa.services | The implementations of the services used in Standalone AutoCSA. |
uk.ac.sanger.cgp.standalonecsa.util | The utility classes used in Standalone AutoCSA. |
Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.beans |
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Methods in uk.ac.sanger.cgp.standalonecsa.beans that return ExperimentBean | |
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ExperimentBean |
TraceGroupBean.getBestAntisenseWildtype()
Get the best antisense/reverse wildtype ExperimentBean. |
ExperimentBean |
TraceGroupBean.getBestSenseWildtype()
Get the best sense/forward wildtype ExperimentBean. |
ExperimentBean |
ExperimentBean.getComplimentExp()
The ExperimentBean of any compliment experiment, requires correct use of runNumber for experiment pairing. |
Methods in uk.ac.sanger.cgp.standalonecsa.beans with parameters of type ExperimentBean | |
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void |
TraceGroupBean.setBestAntisenseWildtype(ExperimentBean bestAntisenseWildtype)
Set the best antisense/reverse wildtype ExperimentBean. |
void |
TraceGroupBean.setBestSenseWildtype(ExperimentBean bestSenseWildtype)
Set the best sense/forward wildtype ExperimentBean. |
void |
ExperimentBean.setComplimentExp(ExperimentBean complimentExp)
Set the ExperimentBean of any compliment experiment, requires correct use of runNumber for experiment pairing. |
Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.interfaces |
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Methods in uk.ac.sanger.cgp.standalonecsa.interfaces with parameters of type ExperimentBean | |
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java.awt.image.BufferedImage |
ChromatogramService.generateComplexVariantView(java.lang.String pathRoot,
ExperimentBean expBean,
ExperimentBean wtExp,
boolean drawBaseChar,
boolean writeToFile)
Generates images required for the complex variant view. |
java.awt.image.BufferedImage |
ChromatogramService.generateFullChrom(java.lang.String imageLoc,
ExperimentBean expBean,
boolean writeImage,
boolean drawBaseChar)
Generates a full chromatogram image. |
java.awt.image.BufferedImage[] |
ChromatogramService.generateVariantViewSet(java.lang.String imageLoc,
ExperimentBean expBean,
ExperimentBean normExp,
boolean drawBaseChar,
boolean writeToFile)
Generates images required for the simple variant view. |
java.awt.image.BufferedImage |
ChromatogramService.generateVariantViewSingle(java.lang.String pathRoot,
ExperimentBean expBean,
boolean writeToFile,
boolean drawBaseChar)
Generates an image as used in the simple variant view. |
Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.services |
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Methods in uk.ac.sanger.cgp.standalonecsa.services with parameters of type ExperimentBean | |
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java.awt.image.BufferedImage |
ChromatogramServiceImpl.generateComplexVariantView(java.lang.String pathRoot,
ExperimentBean expBean,
ExperimentBean wtExp,
boolean drawBaseChar,
boolean writeToFile)
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java.awt.image.BufferedImage |
ChromatogramServiceImpl.generateFullChrom(java.lang.String pathStub,
ExperimentBean expBean,
boolean writeImage,
boolean drawBaseChar)
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java.awt.image.BufferedImage[] |
ChromatogramServiceImpl.generateVariantViewSet(java.lang.String pathRoot,
ExperimentBean expBean,
ExperimentBean wtExp,
boolean drawBaseChar,
boolean writeToFile)
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java.awt.image.BufferedImage |
ChromatogramServiceImpl.generateVariantViewSingle(java.lang.String pathRoot,
ExperimentBean expBean,
boolean writeToFile,
boolean drawBaseChar)
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Uses of ExperimentBean in uk.ac.sanger.cgp.standalonecsa.util |
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Methods in uk.ac.sanger.cgp.standalonecsa.util that return ExperimentBean | |
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static ExperimentBean |
FileHandler.experimentFromFile(java.io.File file,
boolean loadChromatogram)
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Methods in uk.ac.sanger.cgp.standalonecsa.util with parameters of type ExperimentBean | |
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protected static void |
FileHandler.getChromatogram(ExperimentBean eb)
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