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Packages that use TraceGroupBean | |
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uk.ac.sanger.cgp.standalonecsa.interfaces | The service interface classes used in Standalone AutoCSA. |
uk.ac.sanger.cgp.standalonecsa.services | The implementations of the services used in Standalone AutoCSA. |
Uses of TraceGroupBean in uk.ac.sanger.cgp.standalonecsa.interfaces |
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Methods in uk.ac.sanger.cgp.standalonecsa.interfaces that return TraceGroupBean | |
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TraceGroupBean |
FileLocatorService.getAmplimerGroup(java.util.List files,
AmplimerBean amplimer)
Constructs a TraceGroupBean for the specified amplimer. |
Methods in uk.ac.sanger.cgp.standalonecsa.interfaces with parameters of type TraceGroupBean | |
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void |
AnalysisService.analyseTraceGroup(TraceGroupBean tgb)
Performs trace analysis over all experiments in the TraceGroupBean. |
void |
AnalysisService.compareTraceGroup(TraceGroupBean tgb)
Performs comparisons over all valid experiments in the TraceGroupBean. |
void |
FlaggingService.flagTraceGroup(TraceGroupBean traceGroup)
Performs variant flagging. |
void |
ViewService.renderTraceInfo(TraceGroupBean tgb)
Generates variant trace html page. |
void |
ViewService.renderTraceSummary(TraceGroupBean tgb)
Generates the variant trace summary html page. |
void |
ViewService.renderVariantTraceResults(TraceGroupBean traceGroup)
Generate the called variant html pages. |
void |
ViewService.renderWildtypePanel(TraceGroupBean tgb)
Generates wildtype trace html page. |
Uses of TraceGroupBean in uk.ac.sanger.cgp.standalonecsa.services |
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Methods in uk.ac.sanger.cgp.standalonecsa.services that return TraceGroupBean | |
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TraceGroupBean |
FileLocatorServiceImpl.getAmplimerGroup(java.util.List files,
AmplimerBean amplimer)
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Methods in uk.ac.sanger.cgp.standalonecsa.services with parameters of type TraceGroupBean | |
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void |
AnalysisServiceImpl.analyseTraceGroup(TraceGroupBean tgb)
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void |
AnalysisServiceImpl.compareTraceGroup(TraceGroupBean tgb)
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void |
FlaggingServiceImpl.flagTraceGroup(TraceGroupBean traceGroup)
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void |
ViewServiceImpl.renderTraceInfo(TraceGroupBean tgb)
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void |
ViewServiceImpl.renderTraceSummary(TraceGroupBean tgb)
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void |
ViewServiceImpl.renderVariantTraceResults(TraceGroupBean traceGroup)
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void |
ViewServiceImpl.renderWildtypePanel(TraceGroupBean tgb)
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