• NAME
• DESCRIPTION
• AUTHOR
• Functions

NAME

DESCRIPTION

AUTHOR

Functions

new_from_line

Method to parse a tab delimited line into a GeneFeature object

dump

Method to return a formatted output of a GeneFeature object to a filehandle. Uses dump_string

dump_string

Method to return a formatted output of a GeneFeature object to a string.

dump_pair

Method to return a formatted output of a GeneFeature object to a filehandle. Uses dump_string. Includes information about any pairing.

match

Method to compare two GeneFeature objects to look for an overlap returns 5 scalars as an array

1. 0 or 1 indicating if objects match by criteria supplied

2. number indicating signed difference in 5' end of 2 objects

3. number indicating signed difference in 3' end of 2 objects

4. 0 if no overlap; 1 if match; 2 if overlap, but rejected on tolerance+single; 3 if overlap, but rejected on strand;

5. descriptive string about overlap, if there is one

overlap_logical

Method that uses overlap method to return a simple y/n answer on there being an 'overlap'

addPair

Method to add a reference to a GeneFeaturePair object

getPair

Method to get reference to a GeneFeaturePair object. Returns number of GeneFeaturePair objects followed by object selected

getPair_logical

No current documentation