gene contig start end strand length SNPs No. insertions No. deletions No. clipped regions total insertion length total deletion length clipped length No. contig breaks Percent id Match length Match length percent Overlapping secondary gene hits IncHI2_1__BX664015 .16994_1_3.3_part1 137661 137988 - 327 0 0 0 0 0 0 0 0 100.0 327 100.0 IncHI2A_1__BX664015 .16994_1_3.3_part2 5270 5900 + 630 0 0 0 0 0 0 0 0 100.0 630 100.0