#!/bin/bash

for x in `more <>`; 
	do echo "${x}"; 
	mkdir ${x}; 
		bsub -q normal -P <> -o ${x}/${x}.o -e ${x}/${x}.e
		~sh16/scripts/primers_to_tab.py -p <primer_file> -o <out_name>
		${x}.contigs_velvet.fa ; 

done