Index of /pub/users/ac19/Home_files/Lustre_Backup/Kleb_Ent_MiSeq_run/Klebseilla_mapping
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Description
Parent Directory
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10210_1#3_1.fastq
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10210_1#3_1.notag.fastq
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10210_1#3_1.notag.fastq.mapped
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10210_1#3_1.notag.fastq.mapped.bam
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.HF536482.insert_site_plot.gz
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.HF536483.insert_site_plot.gz
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.bamcheck
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.corrected.bam
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.insertion.csv
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10210_1#3_1.out.HF536482.insert_site_plot.gz
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10210_1#3_1.out.HF536483.insert_site_plot.gz
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10210_1#3_1.out.mapped.bam
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10210_1#3_1.out.mapped.bam.bai
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10210_1#3_1.tag.fastq
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10210_1#4_1.fastq
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10210_1#4_1.notag.fastq
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10210_1#4_1.notag.fastq.mapped
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10210_1#4_1.notag.fastq.mapped.bam
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam.HF536482.insert_site_plot.gz
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam.HF536483.insert_site_plot.gz
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam.bamcheck
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam.corrected.bam
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai
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10210_1#4_1.notag.fastq.mapped.bam.sort.bam.insertion.csv
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10210_1#4_1.out.HF536482.insert_site_plot.gz
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10210_1#4_1.out.HF536483.insert_site_plot.gz
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10210_1#4_1.out.mapped.bam
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10210_1#4_1.out.mapped.bam.bai
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10210_1#4_1.tag.fastq
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10210_1#7_1.fastq
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10210_1#7_1.notag.fastq
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10210_1#7_1.notag.fastq.mapped
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10210_1#7_1.notag.fastq.mapped.bam
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10210_1#7_1.notag.fastq.mapped.bam.sort.bam
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10210_1#7_1.notag.fastq.mapped.bam.sort.bam.bamcheck
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10210_1#7_1.notag.fastq.mapped.bam.sort.bam.corrected.bam
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10210_1#7_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai
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10210_1#7_1.out.HF536482.insert_site_plot.gz
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10210_1#7_1.out.HF536483.insert_site_plot.gz
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10210_1#7_1.out.mapped.bam
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10210_1#7_1.out.mapped.bam.bai
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10210_1#7_1.tag.fastq
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10210_1#8_1.fastq
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10210_1#8_1.notag.fastq
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10210_1#8_1.notag.fastq.mapped
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10210_1#8_1.notag.fastq.mapped.bam
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10210_1#8_1.notag.fastq.mapped.bam.sort.bam
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10210_1#8_1.notag.fastq.mapped.bam.sort.bam.bamcheck
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10210_1#8_1.notag.fastq.mapped.bam.sort.bam.corrected.bam
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10210_1#8_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai
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10210_1#8_1.out.HF536482.insert_site_plot.gz
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10210_1#8_1.out.HF536483.insert_site_plot.gz
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10210_1#8_1.out.mapped.bam
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10210_1#8_1.out.mapped.bam.bai
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10210_1#8_1.tag.fastq
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Kleb_fastq_list.stats
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Kleb_fastq_list.txt
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Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_HF536482_v1.1.embl
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Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_HF536482_v1.1.gff
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Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_v1.1.fa
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Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_v1.1.index.sma
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Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_v1.1.index.smi
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TraDIS_plot_summary.pl
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bamcheck.sh
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checkSAM.py
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checkSAM.sh
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convertSmalt.e
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convertSmalt.o
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convertSmalt.sh
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filterFastQ.e
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filterFastQ.o
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filterFastQ.py
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filterFastQ.sh
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filterFastQ2.e
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filterFastQ2.o
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filterFastQ3.e
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filterFastQ3.o
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job_na2me.o
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job_nam2e.e
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job_name.e
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job_name.o
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out.e
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out.o
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output_test1.e
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output_test1.o
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removeTag.e
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removeTag.o
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removeTag.py
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removeTag.sh
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runPicard.py
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runSmalt.e
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runSmalt.o
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runSmalt.sh
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runTradis.e
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runTradis.o
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runTradis.sh
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runTradis2.e
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runTradis2.o
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sortBAM.sh
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sortbam.e
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sortbam.o
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