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521350.se.markdup.bam 2020-09-28 14:53 0
521350.se.markdup.bam.bai 2020-09-28 14:53 0
9876_1#17_1.fastq 2020-09-28 14:53 0
9876_1#17_1.notag.fastq 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
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9876_1#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
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9876_1#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
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9876_2#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
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9876_2#74_1.tag.fastq 2020-09-28 14:53 0
9876_2#82_1.fastq 2020-09-28 14:53 0
9876_2#82_1.notag.fastq 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
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9876_2#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
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9876_2#82_1.tag.fastq 2020-09-28 14:53 0
9876_2#90_1.fastq 2020-09-28 14:53 0
9876_2#90_1.notag.fastq 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
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9876_2#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
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9876_2#90_1.tag.fastq 2020-09-28 14:53 0
9876_2#9_1.fastq 2020-09-28 14:53 0
9876_2#9_1.notag.fastq 2020-09-28 14:53 0
9876_2#9_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_2#9_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
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9876_2#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
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First_test/ 2020-09-28 16:13 -
LMN1_9876#1_merged.bam 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN21_9876#66_merged.bam 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN21_9876#74_merged.bam.corrected.bam 2020-09-28 14:53 34
LMN21_9876#74_merged.bam.corrected.bam.bai 2020-09-28 14:53 16
LMN21_9876#74_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN22_9876#74_merged.bam 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN22_9876#74_vs_LMN24_9876#90_merged_PA14.csv 2020-09-28 14:53 0
LMN23_9876#82_merged.bam 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.corrected.bam 2020-09-28 14:53 0
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LMN24_9876#90_merged.bam 2020-09-28 14:53 0
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LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN24_9876#90_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN24_9876#90_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN24_9876#90_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN2_9876#9_merged.bam 2020-09-28 14:53 0
LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN2_9876#9_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN2_9876#9_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN2_9876#9_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN3_9876#17_merged.bam 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 14:53 0
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LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.pdf 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN3_9876#17_merged.csv 2020-09-28 14:53 0
LMN4_9876#25_merged.bam 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN4_9876#25_merged.csv 2020-09-28 14:53 0
LMN5_9876#33_merged.bam 2020-09-28 14:53 0
LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN5_9876#33_merged.bam.corrected.bam 2020-09-28 14:53 0
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LMN6_9876#41_merged.bam 2020-09-28 14:53 0
LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN6_9876#41_merged.bam.corrected.bam 2020-09-28 14:53 0
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LMN7_9876#49_merged.bam 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN8_9876#57_merged.bam 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.insertion.csv 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.embl 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.fa 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.gff 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.sma 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.smi 2020-09-28 14:53 0
Rplots.pdf 2020-09-28 14:53 0
Second_test/ 2020-09-28 16:13 -
TraDIS_plot_summary.pl 2020-09-28 14:53 0
Ty2_baseline.fixed.tab 2020-09-28 14:53 0
bamcheck.e 2020-09-28 14:53 0
bamcheck.o 2020-09-28 14:53 0
bamcheck.sh 2020-09-28 14:53 53
checkSAM.py 2020-09-28 14:53 0
checkSAM.sh 2020-09-28 14:53 55
convertSmalt.e 2020-09-28 14:53 0
convertSmalt.o 2020-09-28 14:53 0
convertSmalt.sh 2020-09-28 14:53 0
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err_4 2020-09-28 14:53 0
filterFastQ.e 2020-09-28 14:53 0
filterFastQ.o 2020-09-28 14:53 0
filterFastQ.py 2020-09-28 14:53 0
filterFastQ.sh 2020-09-28 14:53 61
job_name.e 2020-09-28 14:53 56
job_name.o 2020-09-28 14:53 0
log_4 2020-09-28 14:53 0
removeTag.py 2020-09-28 14:53 0
removeTag.sh 2020-09-28 14:53 63
runPicard.py 2020-09-28 14:53 0
runSmalt.e 2020-09-28 14:53 0
runSmalt.o 2020-09-28 14:53 0
runSmalt.sh 2020-09-28 14:53 0
runTradis.e 2020-09-28 14:53 0
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scripts/ 2020-09-28 16:13 -
sortBAM.sh 2020-09-28 14:53 0
sortbam.e 2020-09-28 14:53 0
sortbam.o 2020-09-28 14:53 0
tagBAM.py 2020-09-28 14:53 0
tradis_analysis 2020-09-28 14:53 0
tradis_essentiality.R 2020-09-28 14:53 0
tradis_essentiality_Modified_Cdiff6.R 2020-09-28 14:53 0
tradis_gene_insert_sites 2020-09-28 14:53 0
typhi_tradis.R 2020-09-28 14:53 0