Index of /pub/users/ac19/Home_files/Lustre_Backup/TraDIS_Scripts_Carla
Name Last modified Size Description
Parent Directory -
9876_2#66_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_1#82_1.tag.fastq 2020-09-28 14:53 0
9876_2#41_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_1#25_1.fastq 2020-09-28 14:53 0
9876_2#9_1.fastq 2020-09-28 14:53 0
9876_1#74_1.tag.fastq 2020-09-28 14:53 0
9876_2#57_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_1#25_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_2#74_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#25_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#25_1.tag.fastq 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN7_9876#49_merged.bam 2020-09-28 14:53 0
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.corrected.bam 2020-09-28 14:53 0
LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#33_1.notag.fastq.mapped 2020-09-28 14:53 0
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_1#66_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_1#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
runTradis.sh 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.smi 2020-09-28 14:53 0
checkSAM.sh 2020-09-28 14:53 55
9876_1#82_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
tagBAM.py 2020-09-28 14:53 0
tradis_essentiality_Modified_Cdiff6.R 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
LMN24_9876#90_merged.bam.insertion.csv 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_1#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_1#1_1.fastq 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_1#33_1.fastq 2020-09-28 14:53 0
LMN21_9876#66_merged.bam 2020-09-28 14:53 0
9876_1#33_1.notag.fastq 2020-09-28 14:53 0
9876_1#49_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
sortbam.o 2020-09-28 14:53 0
tradis_analysis 2020-09-28 14:53 0
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_1#17_1.notag.fastq 2020-09-28 14:53 0
9876_1#82_1.notag.fastq.mapped 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.insertion.csv 2020-09-28 14:53 0
9876_2#25_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_1#1_1.tag.fastq 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.insertion.csv 2020-09-28 14:53 0
Pseudomonas_aeruginosa_UCBPP-PA14_v1.gff 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
filterFastQ.py 2020-09-28 14:53 0
9876_1#33_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN5_9876#33_merged.bam.insertion.csv 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_2#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#49_1.notag.fastq 2020-09-28 14:53 0
LMN1_9876#1_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
bamcheck.sh 2020-09-28 14:53 53
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#82_1.notag.fastq 2020-09-28 14:53 0
Ty2_baseline.fixed.tab 2020-09-28 14:53 0
9876_1#66_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
LMN6_9876#41_merged.bam 2020-09-28 14:53 0
9876_1#33_1.tag.fastq 2020-09-28 14:53 0
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_1#57_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
LMN4_9876#25_merged.csv 2020-09-28 14:53 0
9876_1#17_1.notag.fastq.mapped 2020-09-28 14:53 0
LMN6_9876#41_merged.bam.corrected.bam 2020-09-28 14:53 0
9876_2#1_1.notag.fastq 2020-09-28 14:53 0
LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_2#57_1.notag.fastq 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_1#9_1.notag.fastq.mapped 2020-09-28 14:53 0
LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#66_1.notag.fastq 2020-09-28 14:53 0
err_4 2020-09-28 14:53 0
9876_2#33_1.tag.fastq 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_1#49_1.notag.fastq 2020-09-28 14:53 0
9876_1#82_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
LMN21_9876#74_merged.bam.corrected.bam.bai 2020-09-28 14:53 16
LMN7_9876#49_merged.bam.insertion.csv 2020-09-28 14:53 0
9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_2#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
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9876_1#25_1.tag.fastq 2020-09-28 14:53 0
9876_2#57_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_1#25_1.notag.fastq 2020-09-28 14:53 0
sortbam.e 2020-09-28 14:53 0
9876_1#41_1.tag.fastq 2020-09-28 14:53 0
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_1#49_1.tag.fastq 2020-09-28 14:53 0
LMN6_9876#41_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
runTradis.e 2020-09-28 14:53 0
9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_2#57_1.fastq 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_2#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_1#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#33_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_1#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
LMN22_9876#74_merged.bam.insertion.csv 2020-09-28 14:53 0
9876_2#25_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_2#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#66_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_2#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
LMN1_9876#1_merged.bam 2020-09-28 14:53 0
tradis_gene_insert_sites 2020-09-28 14:53 0
9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_2#74_1.fastq 2020-09-28 14:53 0
LMN23_9876#82_merged.bam 2020-09-28 14:53 0
9876_1#1_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_2#1_1.notag.fastq.mapped 2020-09-28 14:53 0
9876_2#33_1.notag.fastq 2020-09-28 14:53 0
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#90_1.fastq 2020-09-28 14:53 0
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN3_9876#17_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#74_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_1#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_2#25_1.notag.fastq 2020-09-28 14:53 0
9876_1#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#90_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_2#1_1.notag.fastq.mapped.bam 2020-09-28 14:53 0
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#49_1.fastq 2020-09-28 14:53 0
9876_2#9_1.tag.fastq 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 14:53 0
LMN21_9876#74_merged.bam.corrected.bam 2020-09-28 14:53 34
LMN22_9876#74_vs_LMN24_9876#90_merged_PA14.csv 2020-09-28 14:53 0
9876_2#66_1.tag.fastq 2020-09-28 14:53 0
LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 14:53 0
9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
Rplots.pdf 2020-09-28 14:53 0
9876_2#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
9876_2#41_1.notag.fastq 2020-09-28 14:53 0
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9876_2#74_1.notag.fastq 2020-09-28 14:53 0
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9876_2#9_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_1#17_1.fastq 2020-09-28 14:53 0
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9876_2#82_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
9876_2#82_1.tag.fastq 2020-09-28 14:53 0
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job_name.o 2020-09-28 14:53 0
filterFastQ.sh 2020-09-28 14:53 61
9876_2#17_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
removeTag.sh 2020-09-28 14:53 63
LMN7_9876#49_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 14:53 0
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9876_1#82_1.fastq 2020-09-28 14:53 0
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LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
9876_2#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_1#25_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 14:53 0
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
9876_2#1_1.tag.fastq 2020-09-28 14:53 0
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
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9876_1#41_1.notag.fastq.mapped 2020-09-28 14:53 0
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9876_2#9_1.notag.fastq 2020-09-28 14:53 0
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9876_2#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
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9876_1#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 14:53 0
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9876_1#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 14:53 0
LMN23_9876#82_merged.bam.corrected.bam 2020-09-28 14:53 0
9876_1#25_1.notag.fastq.mapped 2020-09-28 14:53 0
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9876_1#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 14:53 0
LMN4_9876#25_merged.bam.corrected.bam.bai 2020-09-28 14:53 0
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 14:53 0
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9876_2#66_1.notag.fastq.mapped 2020-09-28 14:53 0
First_test/ 2020-09-28 16:13 -
Second_test/ 2020-09-28 16:13 -
scripts/ 2020-09-28 16:13 -