Index of /pub/users/ac19/Home_files/Lustre_Backup/TraDIS_Scripts_Carla

	Name	Last modified	Size	Description
	Parent Directory		-
	scripts/	2020-09-28 16:13	-
	Second_test/	2020-09-28 16:13	-
	First_test/	2020-09-28 16:13	-
	9876_2#66_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	LMN3_9876#17_merged.csv	2020-09-28 14:53	0
	9876_2#25_1.fastq	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	removeTag.py	2020-09-28 14:53	0
	LMN5_9876#33_merged.bam	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq	2020-09-28 14:53	0
	LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped	2020-09-28 14:53	0
	Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.sma	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.pdf	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#17_1.tag.fastq	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	521350.se.markdup.bam.bai	2020-09-28 14:53	0
	9876_2#49_1.fastq	2020-09-28 14:53	0
	9876_2#41_1.fastq	2020-09-28 14:53	0
	9876_2#82_1.fastq	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	tradis_essentiality.R	2020-09-28 14:53	0
	LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN22_9876#74_merged.bam	2020-09-28 14:53	0
	LMN2_9876#9_merged.bam	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#1_1.fastq	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#90_1.tag.fastq	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	LMN21_9876#66_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#41_1.tag.fastq	2020-09-28 14:53	0
	LMN24_9876#90_merged.bam.corrected.bam	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv	2020-09-28 14:53	0
	filterFastQ.o	2020-09-28 14:53	0
	LMN21_9876#66_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#33_1.fastq	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	LMN22_9876#74_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#57_1.fastq	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	bamcheck.e	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	bamcheck.o	2020-09-28 14:53	0
	entED_diff.R	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq	2020-09-28 14:53	0
	runSmalt.e	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq	2020-09-28 14:53	0
	9876_1#74_1.fastq	2020-09-28 14:53	0
	9876_1#9_1.tag.fastq	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	runPicard.py	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	TraDIS_plot_summary.pl	2020-09-28 14:53	0
	9876_1#17_1.tag.fastq	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#74_1.tag.fastq	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	521350.se.markdup.bam	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN5_9876#33_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#66_1.fastq	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	sortBAM.sh	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv	2020-09-28 14:53	0
	9876_2#17_1.fastq	2020-09-28 14:53	0
	LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam	2020-09-28 14:53	0
	LMN1_9876#1_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN24_9876#90_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	Pseudomonas_aeruginosa_UCBPP-PA14_v1.embl	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	convertSmalt.o	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	log_4	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	typhi_tradis.R	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	job_name.e	2020-09-28 14:53	56
	filterFastQ.e	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	Pseudomonas_aeruginosa_UCBPP-PA14_v1.fa	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#41_1.fastq	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.insertion.csv	2020-09-28 14:53	0
	LMN4_9876#25_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	LMN2_9876#9_merged.bam.insertion.csv	2020-09-28 14:53	0
	LMN4_9876#25_merged.bam	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN2_9876#9_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	LMN23_9876#82_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	runSmalt.o	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#90_1.tag.fastq	2020-09-28 14:53	0
	9876_1#57_1.tag.fastq	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#49_1.tag.fastq	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#9_1.fastq	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN4_9876#25_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped	2020-09-28 14:53	0
	LMN23_9876#82_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	runSmalt.sh	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq	2020-09-28 14:53	0
	checkSAM.py	2020-09-28 14:53	0
	LMN2_9876#9_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	LMN23_9876#82_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq	2020-09-28 14:53	0
	LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#66_1.fastq	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	LMN6_9876#41_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#90_1.fastq	2020-09-28 14:53	0
	runTradis.o	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped	2020-09-28 14:53	0
	LMN1_9876#1_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN5_9876#33_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#66_1.tag.fastq	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#1_1.tag.fastq	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#57_1.tag.fastq	2020-09-28 14:53	0
	9876_1#82_1.fastq	2020-09-28 14:53	0
	LMN21_9876#74_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	removeTag.sh	2020-09-28 14:53	63
	9876_2#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	filterFastQ.sh	2020-09-28 14:53	61
	job_name.o	2020-09-28 14:53	0
	convertSmalt.sh	2020-09-28 14:53	0
	9876_2#82_1.tag.fastq	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam	2020-09-28 14:53	0
	9876_1#17_1.fastq	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq	2020-09-28 14:53	0
	LMN24_9876#90_merged.bam	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	Rplots.pdf	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#66_1.tag.fastq	2020-09-28 14:53	0
	LMN22_9876#74_vs_LMN24_9876#90_merged_PA14.csv	2020-09-28 14:53	0
	LMN21_9876#74_merged.bam.corrected.bam	2020-09-28 14:53	34
	LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv	2020-09-28 14:53	0
	9876_2#9_1.tag.fastq	2020-09-28 14:53	0
	9876_1#49_1.fastq	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq	2020-09-28 14:53	0
	LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#90_1.fastq	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq	2020-09-28 14:53	0
	9876_2#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	LMN23_9876#82_merged.bam	2020-09-28 14:53	0
	9876_2#74_1.fastq	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	tradis_gene_insert_sites	2020-09-28 14:53	0
	LMN1_9876#1_merged.bam	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped	2020-09-28 14:53	0
	LMN22_9876#74_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#57_1.fastq	2020-09-28 14:53	0
	LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	runTradis.e	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	LMN6_9876#41_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#49_1.tag.fastq	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#41_1.tag.fastq	2020-09-28 14:53	0
	sortbam.e	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_1#25_1.tag.fastq	2020-09-28 14:53	0
	convertSmalt.e	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam.insertion.csv	2020-09-28 14:53	0
	LMN21_9876#74_merged.bam.corrected.bam.bai	2020-09-28 14:53	16
	9876_1#82_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#33_1.tag.fastq	2020-09-28 14:53	0
	err_4	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq	2020-09-28 14:53	0
	LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_2#1_1.notag.fastq	2020-09-28 14:53	0
	LMN6_9876#41_merged.bam.corrected.bam	2020-09-28 14:53	0
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	LMN4_9876#25_merged.csv	2020-09-28 14:53	0
	9876_1#57_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#33_1.tag.fastq	2020-09-28 14:53	0
	LMN6_9876#41_merged.bam	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	Ty2_baseline.fixed.tab	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	bamcheck.sh	2020-09-28 14:53	53
	LMN1_9876#1_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	LMN22_9876#74_merged.bam.corrected.bam.bai	2020-09-28 14:53	0
	LMN5_9876#33_merged.bam.insertion.csv	2020-09-28 14:53	0
	LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	filterFastQ.py	2020-09-28 14:53	0
	LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	Pseudomonas_aeruginosa_UCBPP-PA14_v1.gff	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#1_1.tag.fastq	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	LMN4_9876#25_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq	2020-09-28 14:53	0
	9876_1#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	tradis_analysis	2020-09-28 14:53	0
	sortbam.o	2020-09-28 14:53	0
	LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_1#49_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq	2020-09-28 14:53	0
	LMN21_9876#66_merged.bam	2020-09-28 14:53	0
	9876_1#33_1.fastq	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_1#1_1.fastq	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	LMN24_9876#90_merged.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#82_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_2#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	tradis_essentiality_Modified_Cdiff6.R	2020-09-28 14:53	0
	tagBAM.py	2020-09-28 14:53	0
	9876_1#82_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	checkSAM.sh	2020-09-28 14:53	55
	Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.smi	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam	2020-09-28 14:53	0
	9876_1#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	runTradis.sh	2020-09-28 14:53	0
	9876_1#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0
	9876_2#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#66_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped	2020-09-28 14:53	0
	LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	LMN21_9876#66_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam	2020-09-28 14:53	0
	LMN7_9876#49_merged.bam.corrected.bam	2020-09-28 14:53	0
	9876_2#25_1.tag.fastq	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_2#74_1.notag.fastq.mapped.bam.sort.bam	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_2#57_1.notag.fastq.mapped	2020-09-28 14:53	0
	9876_1#74_1.tag.fastq	2020-09-28 14:53	0
	9876_2#9_1.fastq	2020-09-28 14:53	0
	9876_1#25_1.fastq	2020-09-28 14:53	0
	9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_2#41_1.notag.fastq.mapped.bam	2020-09-28 14:53	0
	9876_1#82_1.tag.fastq	2020-09-28 14:53	0
	9876_2#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai	2020-09-28 14:53	0
	9876_1#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck	2020-09-28 14:53	0
	9876_1#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz	2020-09-28 14:53	0
	9876_2#66_1.notag.fastq.mapped.bam.sort.bam.insertion.csv	2020-09-28 14:53	0