Index of /pub/users/ac19/Kleb_Ent_MiSeq_run/Enterobacter_mapping

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[PARENTDIR] Parent Directory - [   ] 10210_1#5_1.notag.fastq.mapped 2020-09-28 15:09 200M [   ] 10210_1#10_1.notag.fastq.mapped 2020-09-28 15:09 190M [   ] 10210_1#9_1.notag.fastq.mapped 2020-09-28 15:09 171M [   ] 10210_1#6_1.notag.fastq.mapped 2020-09-28 15:09 162M [   ] 10210_1#5_1.fastq 2020-09-28 15:09 139M [TXT] 10210_1#5_1.tag.fastq 2020-09-28 15:09 138M [   ] 10210_1#10_1.fastq 2020-09-28 15:09 133M [TXT] 10210_1#10_1.tag.fastq 2020-09-28 15:09 131M [   ] 10210_1#9_1.fastq 2020-09-28 15:09 121M [TXT] 10210_1#9_1.tag.fastq 2020-09-28 15:09 119M [   ] 10210_1#5_1.notag.fastq 2020-09-28 15:09 118M [   ] 10210_1#6_1.fastq 2020-09-28 15:09 113M [   ] 10210_1#10_1.notag.fastq 2020-09-28 15:09 113M [TXT] 10210_1#6_1.tag.fastq 2020-09-28 15:09 112M [   ] 10210_1#9_1.notag.fastq 2020-09-28 15:09 102M [   ] 10210_1#6_1.notag.fastq 2020-09-28 15:09 96M [   ] 10210_1#5_1.notag.fastq.mapped.bam 2020-09-28 15:09 49M [   ] 10210_1#10_1.notag.fastq.mapped.bam 2020-09-28 15:09 42M [   ] 10210_1#6_1.notag.fastq.mapped.bam 2020-09-28 15:09 40M [   ] 10210_1#9_1.notag.fastq.mapped.bam 2020-09-28 15:09 38M [   ] 10210_1#5_1.out.mapped.bam 2020-09-28 15:09 37M [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 37M [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:09 34M [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam 2020-09-28 15:09 34M [   ] 10210_1#6_1.out.mapped.bam 2020-09-28 15:09 31M [   ] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 31M [   ] 10210_1#10_1.out.mapped.bam 2020-09-28 15:09 29M [   ] 10210_1#9_1.out.mapped.bam 2020-09-28 15:09 27M [   ] 10210_1#9_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 27M [   ] 10210_1#10_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 26M [   ] 10210_1#10_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:09 26M [   ] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:09 18M [   ] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam 2020-09-28 15:09 18M [   ] Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.index.smi 2020-09-28 15:09 17M [   ] Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.embl 2020-09-28 15:09 9.7M [   ] Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.gff 2020-09-28 15:09 7.0M [   ] Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa 2020-09-28 15:09 4.8M [   ] Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.index.sma 2020-09-28 15:09 1.9M [   ] 10210_1#5_1.out.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 752K [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 744K [   ] 10210_1#10_1.out.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 706K [   ] 10210_1#10_1.notag.fastq.mapped.bam.sort.bam.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 688K [   ] 10210_1#9_1.out.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 681K [   ] 10210_1#6_1.out.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 678K [   ] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Enterobacter_cloacae_subsp_cloacae_NCTC_9394_v1.fa.insert_site_plot.gz 2020-09-28 15:09 439K [TXT] 10210_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv 2020-09-28 15:09 203K [TXT] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv 2020-09-28 15:09 203K [TXT] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 15:09 203K [TXT] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv 2020-09-28 15:09 203K [TXT] 10210_1#10_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 15:09 203K [TXT] *.sort.bam.insertion.csv 2020-09-28 15:09 203K [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:09 26K [   ] 10210_1#10_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:09 26K [   ] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:09 25K [   ] 10210_1#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:09 25K [   ] 10210_1#5_1.out.mapped.bam.bai 2020-09-28 15:09 14K [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 15:09 14K [   ] 10210_1#6_1.out.mapped.bam.bai 2020-09-28 15:09 14K [   ] 10210_1#5_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam.bai 2020-09-28 15:09 14K [   ] 10210_1#9_1.out.mapped.bam.bai 2020-09-28 15:09 13K [   ] 10210_1#10_1.out.mapped.bam.bai 2020-09-28 15:09 13K [   ] 10210_1#10_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 15:09 13K [   ] 10210_1#6_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam.bai 2020-09-28 15:09 8.9K [   ] runSmalt.e 2020-09-28 15:09 8.0K [   ] output_test1.e 2020-09-28 15:09 7.7K [   ] bamcheck.o 2020-09-28 15:09 7.2K [   ] runTradis.o 2020-09-28 15:09 6.4K [   ] runSmalt2.e 2020-09-28 15:09 5.6K [   ] runSmalt.o 2020-09-28 15:09 5.2K [   ] sortbam.o 2020-09-28 15:09 4.1K [   ] convertSmalt.o 2020-09-28 15:09 3.5K [   ] runSmalt2.o 2020-09-28 15:09 3.2K [   ] output_test1.o 2020-09-28 15:09 3.1K [   ] removeTag.o 2020-09-28 15:09 3.1K [   ] runTradis.e 2020-09-28 15:09 2.5K [TXT] TraDIS_plot_summary.pl 2020-09-28 15:09 2.5K [   ] filterFastQ.o 2020-09-28 15:09 2.1K [   ] runTradis2.o 2020-09-28 15:09 1.1K [   ] sortbam2.o 2020-09-28 15:09 1.1K [   ] job_name.o 2020-09-28 15:09 1.0K [TXT] tagBAM.py 2020-09-28 15:09 1.0K [   ] Ent_fastq_list.stats 2020-09-28 15:09 752 [TXT] filterFastQ.py 2020-09-28 15:09 741 [   ] sortbam.e 2020-09-28 15:09 656 [TXT] removeTag.py 2020-09-28 15:09 650 [TXT] checkSAM.py 2020-09-28 15:09 619 [TXT] runPicard.py 2020-09-28 15:09 612 [   ] convertSmalt.e 2020-09-28 15:09 552 [   ] Ent_fastq_list2.stats 2020-09-28 15:09 380 [   ] runTradis2.e 2020-09-28 15:09 283 [   ] bamcheck.e 2020-09-28 15:09 258 [TXT] runTradis.sh 2020-09-28 15:09 188 [TXT] runSmalt.sh 2020-09-28 15:09 127 [TXT] Ent_fastq_list.txt 2020-09-28 15:09 74 [TXT] convertSmalt.sh 2020-09-28 15:09 69 [TXT] sortBAM.sh 2020-09-28 15:09 65 [TXT] removeTag.sh 2020-09-28 15:09 63 [TXT] filterFastQ.sh 2020-09-28 15:09 61 [TXT] checkSAM.sh 2020-09-28 15:09 55 [TXT] bamcheck.sh 2020-09-28 15:09 53 [   ] sortbam2.e 2020-09-28 15:09 41 [   ] 10210_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam 2020-09-28 15:09 34 [   ] *.sort.bam.corrected.bam 2020-09-28 15:09 34 [TXT] Ent_fastq_list2.txt 2020-09-28 15:09 18 [   ] 10210_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam.bai 2020-09-28 15:09 16 [   ] *.sort.bam.corrected.bam.bai 2020-09-28 15:09 16 [   ] removeTag.e 2020-09-28 14:03 0 [   ] job_name.e 2020-09-28 14:03 0 [   ] filterFastQ.e 2020-09-28 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