Index of /pub/users/ac19/Kleb_Ent_MiSeq_run/Klebseilla_mapping
Name Last modified Size Description
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10210_1#3_1.fastq 2020-09-28 15:10 102M
10210_1#3_1.notag.fastq 2020-09-28 15:10 86M
10210_1#3_1.notag.fastq.mapped 2020-09-28 15:10 14M
10210_1#3_1.notag.fastq.mapped.bam 2020-09-28 15:09 4.3M
10210_1#3_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 3.6M
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.HF536482.insert_site_plot.gz 2020-09-28 15:09 158K
10210_1#3_1.notag.fastq.mapped.bam.sort.bam.HF536483.insert_site_plot.gz 2020-09-28 15:10 11K
10210_1#3_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:10 16K
10210_1#3_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:10 3.6M
10210_1#3_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 15:10 12K
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10210_1#3_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 15:09 555K
10210_1#3_1.out.HF536482.insert_site_plot.gz 2020-09-28 15:10 419K
10210_1#3_1.out.HF536483.insert_site_plot.gz 2020-09-28 15:10 25K
10210_1#3_1.out.mapped.bam 2020-09-28 15:09 26M
10210_1#3_1.out.mapped.bam.bai 2020-09-28 15:10 14K
10210_1#3_1.tag.fastq 2020-09-28 15:10 101M
10210_1#4_1.fastq 2020-09-28 15:10 132M
10210_1#4_1.notag.fastq 2020-09-28 15:10 75M
10210_1#4_1.notag.fastq.mapped 2020-09-28 15:10 152M
10210_1#4_1.notag.fastq.mapped.bam 2020-09-28 15:10 47M
10210_1#4_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 33M
10210_1#4_1.notag.fastq.mapped.bam.sort.bam.HF536482.insert_site_plot.gz 2020-09-28 15:09 461K
10210_1#4_1.notag.fastq.mapped.bam.sort.bam.HF536483.insert_site_plot.gz 2020-09-28 15:10 28K
10210_1#4_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:09 26K
10210_1#4_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:09 33M
10210_1#4_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 15:10 14K
10210_1#4_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 15:09 570K
10210_1#4_1.out.HF536482.insert_site_plot.gz 2020-09-28 15:10 461K
10210_1#4_1.out.HF536483.insert_site_plot.gz 2020-09-28 15:09 28K
10210_1#4_1.out.mapped.bam 2020-09-28 15:10 33M
10210_1#4_1.out.mapped.bam.bai 2020-09-28 15:10 14K
10210_1#4_1.tag.fastq 2020-09-28 15:10 130M
10210_1#7_1.fastq 2020-09-28 15:09 102M
10210_1#7_1.notag.fastq 2020-09-28 15:10 86M
10210_1#7_1.notag.fastq.mapped 2020-09-28 15:10 117M
10210_1#7_1.notag.fastq.mapped.bam 2020-09-28 15:10 32M
10210_1#7_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 21M
10210_1#7_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:10 24K
10210_1#7_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:10 2.0M
10210_1#7_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 15:09 14K
10210_1#7_1.out.HF536482.insert_site_plot.gz 2020-09-28 15:09 415K
10210_1#7_1.out.HF536483.insert_site_plot.gz 2020-09-28 15:10 25K
10210_1#7_1.out.mapped.bam 2020-09-28 15:10 21M
10210_1#7_1.out.mapped.bam.bai 2020-09-28 15:10 14K
10210_1#7_1.tag.fastq 2020-09-28 15:10 101M
10210_1#8_1.fastq 2020-09-28 15:10 132M
10210_1#8_1.notag.fastq 2020-09-28 15:09 28M
10210_1#8_1.notag.fastq.mapped 2020-09-28 15:10 152M
10210_1#8_1.notag.fastq.mapped.bam 2020-09-28 15:10 42M
10210_1#8_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 15:09 26M
10210_1#8_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 15:09 26K
10210_1#8_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 15:09 16M
10210_1#8_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 15:09 14K
10210_1#8_1.out.HF536482.insert_site_plot.gz 2020-09-28 15:10 446K
10210_1#8_1.out.HF536483.insert_site_plot.gz 2020-09-28 15:10 27K
10210_1#8_1.out.mapped.bam 2020-09-28 15:10 26M
10210_1#8_1.out.mapped.bam.bai 2020-09-28 15:10 14K
10210_1#8_1.tag.fastq 2020-09-28 15:10 130M
Kleb_fastq_list.stats 2020-09-28 15:10 1.6K
Kleb_fastq_list.txt 2020-09-28 15:10 73
Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_HF536482_v1.1.embl 2020-09-28 15:10 11M
Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_HF536482_v1.1.gff 2020-09-28 15:09 7.7M
Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_v1.1.fa 2020-09-28 15:10 5.4M
Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_v1.1.index.sma 2020-09-28 15:10 2.1M
Klebsiella_pneumoniae_subsp_pneumoniae_Ecl8_v1.1.index.smi 2020-09-28 15:10 19M
TraDIS_plot_summary.pl 2020-09-28 15:10 2.5K
bamcheck.sh 2020-09-28 15:09 53
checkSAM.py 2020-09-28 15:10 619
checkSAM.sh 2020-09-28 15:10 55
convertSmalt.e 2020-09-28 15:10 215
convertSmalt.o 2020-09-28 15:10 1.2K
convertSmalt.sh 2020-09-28 15:09 69
filterFastQ.e 2020-09-28 15:09 436
filterFastQ.o 2020-09-28 15:10 4.2K
filterFastQ.py 2020-09-28 15:10 741
filterFastQ.sh 2020-09-28 15:09 61
filterFastQ2.e 2020-09-28 14:03 0
filterFastQ2.o 2020-09-28 15:09 2.1K
filterFastQ3.e 2020-09-28 15:09 156
filterFastQ3.o 2020-09-28 15:10 1.0K
job_na2me.o 2020-09-28 15:09 1.0K
job_nam2e.e 2020-09-28 14:04 0
job_name.e 2020-09-28 15:10 56
job_name.o 2020-09-28 15:09 3.1K
out.e 2020-09-28 15:10 8.5K
out.o 2020-09-28 15:10 1.6K
output_test1.e 2020-09-28 15:10 54
output_test1.o 2020-09-28 15:10 1.3K
removeTag.e 2020-09-28 15:10 272
removeTag.o 2020-09-28 15:10 4.2K
removeTag.py 2020-09-28 15:10 650
removeTag.sh 2020-09-28 15:09 63
runPicard.py 2020-09-28 15:10 612
runSmalt.e 2020-09-28 15:10 4.2K
runSmalt.o 2020-09-28 15:10 3.1K
runSmalt.sh 2020-09-28 15:10 128
runTradis.e 2020-09-28 15:10 4.9K
runTradis.o 2020-09-28 15:10 1.0K
runTradis.sh 2020-09-28 15:10 197
runTradis2.e 2020-09-28 15:10 225
runTradis2.o 2020-09-28 15:09 1.1K
sortBAM.sh 2020-09-28 15:10 65
sortbam.e 2020-09-28 15:10 163
sortbam.o 2020-09-28 15:09 1.0K