BLASR maps reads to genomes by finding the highest scoring local alignment or set of local alignments between the read and
the genome. The first set of alignments is found by querying an index of the reference genome, and then refining until only
high scoring alignments are retained. Additional pulse metrics are loaded into the resulting cmp.h5 file to enable downstream
use of the Quiver algorithm.
p_mapping.loadPulsesOpts
bymetric
p_consensusreports.moduleName
P_ConsensusReports
global.version
1
global.fetch
common/protocols/preprocessing/Fetch.1.xml
global.state
active
global.consensus
common/protocols/consensus/Quiver.1.xml
global.description
Map length and quality-filtered reads against a reference sequence; identify consensus and variant sequences using Quiver
algorithm.