Index of /pub/users/ac19/Pseudomonas/Pseudomonas_TM_TraDIS_analysis/MiSeq_260713_Analysis

Icon  Name                                                        Last modified      Size  Description
[PARENTDIR] Parent Directory                                                                 -   
[   ] 9521_1#14.mapped3.nt.bam.CP000438.insert_site_plot.gz       2020-09-28 15:56  232K  
[   ] 9521_1#15.mapped3.nt.bam.CP000438.insert_site_plot.gz       2020-09-28 15:56  226K  
[   ] 9525_1#10.mapped3.nt.bam.CP000438.insert_site_plot.gz       2020-09-28 15:56   91K  
[   ] 9525_1#11.mapped3.nt.bam.CP000438.insert_site_plot.gz       2020-09-28 15:56   40K  
[   ] 9525_1#12.mapped3.nt.bam.CP000438.insert_site_plot.gz       2020-09-28 15:56   83K  
[   ] 9525_1#13.mapped3.nt.bam.CP000438.insert_site_plot.gz       2020-09-28 15:56   37K  
[   ] 9525_1#6.mapped3.nt.bam.CP000438.insert_site_plot.gz        2020-09-28 15:56  442K  
[   ] 9525_1#7.mapped3.nt.bam.CP000438.insert_site_plot.gz        2020-09-28 15:56  223K  
[   ] 9525_1#8.mapped3.nt.bam.CP000438.insert_site_plot.gz        2020-09-28 15:56  427K  
[   ] 9525_1#9.mapped3.nt.bam.CP000438.insert_site_plot.gz        2020-09-28 15:56   60K  
[   ] Gm_input_19521_1#14.fastq                                   2020-09-28 15:56  450M  
[   ] Gm_input_29521_1#15.fastq                                   2020-09-28 15:56  407M  
[   ] LMN1_9839_1#1.fastq                                         2020-09-28 15:56   24M  
[   ] LMN1_9876_1#1.fastq                                         2020-09-28 15:56  185M  
[   ] LMN22_9839_1#74.fastq                                       2020-09-28 15:56   28M  
[   ] LMN22_9876_1#74.fastq                                       2020-09-28 15:56  267M  
[   ] LMN24_9839_1#90.fastq                                       2020-09-28 15:56   39M  
[   ] LMN24_9876_1#90.fastq                                       2020-09-28 15:56  364M  
[   ] LMN3_9839_1#17.fastq                                        2020-09-28 15:56   30M  
[   ] LMN3_9876_1#17.fastq                                        2020-09-28 15:56  234M  
[TXT] MiSeq_Test_lanes.txt                                        2020-09-28 15:56  222   
[   ] Pseudomonas_aeruginosa_UCBPP-PA14_v1.embl                   2020-09-28 15:56   15M  
[   ] Pseudomonas_aeruginosa_UCBPP-PA14_v1.fa                     2020-09-28 15:56  6.3M  
[   ] Pseudomonas_aeruginosa_UCBPP-PA14_v1.gff                    2020-09-28 15:56   11M  
[   ] Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.sma              2020-09-28 15:56  2.5M  
[   ] Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.smi              2020-09-28 15:56   21M  
[TXT] TraDIS_plot_summary.pl                                      2020-09-28 15:56  2.5K  
[   ] bamcheck.e                                                  2020-09-28 15:56    0   
[   ] bamcheck.o                                                  2020-09-28 15:56  1.0K  
[TXT] bamcheck.sh                                                 2020-09-28 15:56   53   
[TXT] checkSAM.py                                                 2020-09-28 15:56  619   
[TXT] checkSAM.sh                                                 2020-09-28 15:56   55   
[   ] convertSmalt.o                                              2020-09-28 15:56  1.4K  
[TXT] convertSmalt.sh                                             2020-09-28 15:56   69   
[   ] filterFastQ.e                                               2020-09-28 15:56    0   
[   ] filterFastQ.o                                               2020-09-28 15:56  1.1K  
[TXT] filterFastQ.py                                              2020-09-28 15:56  741   
[TXT] filterFastQ.sh                                              2020-09-28 15:56   61   
[   ] filterFastQ2.e                                              2020-09-28 15:56    0   
[   ] filterFastQ2.o                                              2020-09-28 15:56  1.1K  
[   ] removeTag.e                                                 2020-09-28 15:56    0   
[   ] removeTag.o                                                 2020-09-28 15:56  1.0K  
[TXT] removeTag.py                                                2020-09-28 15:56  650   
[TXT] removeTag.sh                                                2020-09-28 15:56   63   
[TXT] runPicard.py                                                2020-09-28 15:56  612   
[   ] runSmalt.e                                                  2020-09-28 15:56  9.6K  
[   ] runSmalt.o                                                  2020-09-28 15:56  1.0K  
[TXT] runSmalt.sh                                                 2020-09-28 15:56  116   
[   ] runTradis.e                                                 2020-09-28 15:56   12K  
[   ] runTradis.o                                                 2020-09-28 15:56  1.0K  
[TXT] runTradis.sh                                                2020-09-28 15:56  171   
[   ] runTradis2.e                                                2020-09-28 15:56  460   
[   ] runTradis2.o                                                2020-09-28 15:56  1.0K  
[TXT] sortBAM.sh                                                  2020-09-28 15:56   65   
[   ] sortbam.e                                                   2020-09-28 15:56  415   
[   ] sortbam.o                                                   2020-09-28 15:56  1.0K  
[TXT] tagBAM.py                                                   2020-09-28 15:56  1.0K