Index of /pub/users/ac19/Staph_ALC/HiSeq_12942_Analysis

Icon  Name                                                      Last modified      Size  Description
[PARENTDIR] Parent Directory                                                               -   
[DIR] pathfind_12942_2/                                         2020-09-28 16:47    -   
[DIR] pathfind_12942_1/                                         2020-09-28 16:47    -   
[   ] 12942_1#42_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  225K  
[   ] 12942_2#38_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   38K  
[   ] 12942_1#39_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  136K  
[   ] Staphylococcus_aureus_subsp_aureus_ST398_pS0385-3_v1.embl 2020-09-28 16:01  7.9K  
[   ] 12942_1#42_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   35K  
[   ] 12942_1#40_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.0K  
[   ] 12942_1#44_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   95K  
[   ] 12942_1#38_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   82   
[   ] 12942_2#39_1.out.gz.mapped.bam                            2020-09-28 16:01   86M  
[   ] 12942_2#45_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   70   
[   ] 12942_2#48_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   34K  
[   ] 12942_1#43_1.out.gz.mapped.bam                            2020-09-28 16:01  107M  
[   ] 12942_1#42_1.out.gz.mapped.bam                            2020-09-28 16:01   85M  
[   ] 12942_2#48_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  417   
[   ] 12942_2#46_1.out.gz.mapped.bam                            2020-09-28 16:01   78M  
[   ] 12942_2#39_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  289   
[   ] 12942_1#43_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  234   
[   ] 12942_1#48_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   34K  
[   ] 12942_1#46_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01   77   
[   ] 12942_2#40_1.out.gz.mapped.bam                            2020-09-28 16:01   63M  
[   ] 12942_2#47_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   25K  
[   ] 12942_1#47_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   26K  
[   ] 12942_1#39_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  103   
[   ] 12942_2#48_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  333   
[   ] 12942_2#44_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   38K  
[   ] 12942_2#39_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   84   
[   ] 12942_2#37_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   35K  
[   ] 12942_1#46_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   23K  
[   ] 12942_2#45_1.out.gz.mapped.bam                            2020-09-28 16:01  103M  
[   ] 12942_2#37_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  488   
[   ] Staphylococcus_aureus_subsp_aureus_ST398_v1.fa            2020-09-28 16:01  2.8M  
[   ] 12942_1#48_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  680   
[   ] 12942_1#40_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   75   
[   ] 12942_2#37_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   76   
[   ] 12942_2#43_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.7K  
[   ] 12942_2#40_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01   81   
[   ] 12942_1#42_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.4K  
[   ] Staphylococcus_aureus_subsp_aureus_ST398_pS0385-2_v1.embl 2020-09-28 16:01   12K  
[   ] 12942_1#44_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   78   
[   ] 12942_2#39_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   32K  
[   ] 12942_2#40_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  5.9K  
[   ] 12942_1#41_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   68   
[   ] 12942_2#39_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  109   
[   ] 12942_2#40_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   65   
[   ] 12942_2#42_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   35K  
[   ] 12942_1#46_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  5.9K  
[   ] 12942_1#45_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   61   
[   ] 12313_1#7_1.out.gz.selected.insert_site_plot.gz           2020-09-28 16:01  415K  
[   ] 12942_1#46_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   27K  
[   ] 12942_2#46_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  183   
[   ] 12942_2#44_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   95K  
[   ] 12942_1#40_1.out.gz.mapped.bam                            2020-09-28 16:01   65M  
[   ] 12942_2#38_1.out.gz.mapped.bam                            2020-09-28 16:01   98M  
[   ] 12942_2#41_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  107   
[   ] 12942_1#43_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   80K  
[   ] 12942_2#42_1.out.gz.mapped.bam                            2020-09-28 16:01   82M  
[   ] 12942_1#42_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  105   
[   ] 12942_2#37_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.3K  
[   ] 12942_2#42_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  225K  
[   ] 12942_2#45_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.9K  
[   ] 12942_2#45_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   61   
[   ] 12942_1#46_1.out.gz.mapped.bam                            2020-09-28 16:01   81M  
[   ] 12942_2#40_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   27K  
[   ] staph_fastq_list.stats                                    2020-09-28 16:01  4.3K  
[   ] 12942_2#43_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   39K  
[   ] 12942_1#47_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  289   
[   ] 12942_1#40_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   27K  
[   ] 12942_2#45_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  100K  
[   ] 12942_2#44_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   64   
[   ] 12942_1#41_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   31K  
[   ] 12942_2#46_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   22K  
[   ] 12942_1#37_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  180K  
[   ] 12942_1#43_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   76   
[   ] 12942_2#37_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  179K  
[   ] 12942_1#45_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  293   
[   ] 12942_2#42_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  102   
[   ] tradis_out.e                                              2020-09-28 16:01   36K  
[   ] 12942_1#39_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   90   
[   ] 12942_1#37_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   79   
[   ] 12942_2#44_1.out.gz.mapped.bam                            2020-09-28 16:01  108M  
[   ] 12942_2#43_1.out.gz.mapped.bam                            2020-09-28 16:01  103M  
[TXT] 12942_2.pathfind_stats.csv                                2020-09-28 16:01  2.3K  
[TXT] staph_fastq_list.txt                                      2020-09-28 16:01  528   
[   ] Staphylococcus_aureus_subsp_aureus_ST398_pS0385-1_v1.embl 2020-09-28 16:01   13K  
[   ] 12313_1#10_1.out.gz.selected.insert_site_plot.gz          2020-09-28 16:01  364K  
[   ] 12942_1#41_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   61   
[   ] tradis_out.o                                              2020-09-28 16:01  1.4K  
[   ] 12942_2#47_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  257   
[   ] 12942_2#41_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   29K  
[   ] 12942_1#41_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   29K  
[   ] 12942_1#43_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   77   
[   ] 12942_2#39_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  135K  
[   ] 12942_1#47_1.out.gz.mapped.bam                            2020-09-28 16:01   84M  
[   ] 12942_2#44_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.6K  
[   ] 12942_1#39_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  287   
[   ] 12942_1#37_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   87   
[   ] 12313_1#11_1.out.gz.selected.insert_site_plot.gz          2020-09-28 16:01  390K  
[   ] 12942_1#42_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   95   
[   ] 12942_2#42_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  108   
[   ] 12942_1#46_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  228   
[   ] 12942_1#48_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  276K  
[   ] 12942_1#45_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   70   
[   ] 12942_2#47_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   31K  
[   ] 12942_1#37_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   36K  
[   ] 12942_1#47_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  299   
[   ] 12942_1#45_1.out.gz.mapped.bam                            2020-09-28 16:01  107M  
[   ] 12942_1#48_1.out.gz.mapped.bam                            2020-09-28 16:01  108M  
[   ] 12942_1#39_1.out.gz.mapped.bam                            2020-09-28 16:01   90M  
[   ] 12942_2#48_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  698   
[   ] Staphylococcus_aureus_subsp_aureus_ST398_chr_v1.embl      2020-09-28 16:01  6.6M  
[   ] 12942_1#48_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01  447   
[   ] 12942_2#42_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.4K  
[   ] 12942_1#45_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.9K  
[   ] 12942_2#41_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   30K  
[   ] 12942_2#40_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   21K  
[   ] 12313_1#8_1.out.gz.selected.insert_site_plot.gz           2020-09-28 16:01  364K  
[   ] 12942_2#37_1.out.gz.mapped.bam                            2020-09-28 16:01   92M  
[   ] 12942_1#44_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   38K  
[   ] 12942_1#42_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  571   
[   ] 12942_2#47_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  5.9K  
[   ] 12942_1#38_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   38K  
[   ] 12942_1#38_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.3K  
[   ] 12942_1#48_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  331   
[   ] 12942_1#43_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   38K  
[   ] 12942_2#38_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.3K  
[   ] 12942_2#46_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01   81   
[   ] 12942_2#44_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   79   
[   ] 12942_2#43_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  226   
[TXT] 12942_1.pathfind_stats.csv                                2020-09-28 16:01  2.3K  
[   ] 12942_2#42_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  593   
[   ] 12942_1#37_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  477   
[   ] 12942_2#41_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   57   
[   ] 12942_1#44_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.6K  
[   ] 12942_2#46_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.0K  
[   ] 12942_2#38_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  367   
[   ] 12942_2#38_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  141K  
[   ] 12942_2#43_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   76   
[   ] 12942_1#44_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  262   
[   ] 12942_1#47_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01   95   
[   ] 12942_2#48_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.9K  
[   ] 12942_2#47_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01   84   
[   ] 12942_1#45_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  101K  
[   ] 12942_2#45_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   34K  
[   ] 12942_1#47_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  5.9K  
[   ] 12942_1#41_1.out.gz.mapped.bam                            2020-09-28 16:01   73M  
[   ] 12942_1#40_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01   72   
[   ] 12942_1#41_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  109   
[   ] 12942_1#39_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.0K  
[   ] 12942_1#48_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  8.0K  
[   ] 12942_2#41_1.out.gz.mapped.bam                            2020-09-28 16:01   70M  
[   ] 12942_1#38_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  369   
[   ] 12942_2#41_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   61   
[   ] 12942_2#40_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   69   
[   ] 12942_2#38_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   92   
[   ] 12942_1#40_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   65   
[   ] 12942_1#37_1.out.gz.mapped.bam                            2020-09-28 16:01   95M  
[   ] 12942_2#48_1.out.gz.mapped.bam                            2020-09-28 16:01  104M  
[   ] 12942_2#43_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   80K  
[   ] 12942_1#46_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  205   
[   ] 12942_2#46_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  207   
[   ] 12942_1#38_1.out.gz.mapped.bam                            2020-09-28 16:01  102M  
[   ] 12942_1#44_1.out.gz.mapped.bam                            2020-09-28 16:01  113M  
[   ] 12942_1#43_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.8K  
[   ] 12942_2#41_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  6.0K  
[   ] 12942_2#37_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   87   
[   ] 12942_2#47_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01  260   
[   ] 12942_1#38_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  142K  
[   ] 12942_1#38_1.out.gz.AM990994.insert_site_plot.gz          2020-09-28 16:01   91   
[   ] 12942_2#46_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   27K  
[   ] 12942_2#45_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  292   
[   ] 12942_2#43_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   73   
[   ] 12942_1#47_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   31K  
[   ] 12942_1#41_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  5.9K  
[   ] 12942_1#39_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   32K  
[   ] 12942_2#44_1.out.gz.AM990993.insert_site_plot.gz          2020-09-28 16:01  251   
[   ] 12942_2#48_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01  276K  
[   ] 12942_2#47_1.out.gz.mapped.bam                            2020-09-28 16:01   81M  
[   ] 12942_2#39_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.1K  
[   ] 12942_1#40_1.out.gz.AM990992.insert_site_plot.gz          2020-09-28 16:01   21K  
[   ] 12942_1#45_1.out.gz.mapped.bamcheck                       2020-09-28 16:01   33K  
[   ] 12942_1#44_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   65   
[   ] 12942_1#37_1.out.gz.mapped.bam.bai                        2020-09-28 16:01  7.4K  
[   ] 12942_2#38_1.out.gz.AM990995.insert_site_plot.gz          2020-09-28 16:01   80