Index of /pub/users/ac19/TraDIS_Scripts_Carla

Icon  Name                                                                                                                                                                            Last modified      Size  Description
[PARENTDIR] Parent Directory - [DIR] scripts/ 2020-09-28 19:20 - [DIR] Second_test/ 2020-09-28 19:20 - [DIR] First_test/ 2020-09-28 19:19 - [   ] bamcheck.o 2020-09-28 16:06 1.0K [   ] 9876_1#9_1.notag.fastq 2020-09-28 16:06 181M [   ] entED_diff.R 2020-09-28 16:06 1.8K [   ] 9876_1#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 28K [   ] runSmalt.e 2020-09-28 16:06 16K [   ] 9876_1#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:06 26K [   ] 9876_1#41_1.notag.fastq 2020-09-28 16:06 203M [   ] 9876_1#74_1.fastq 2020-09-28 16:06 267M [TXT] 9876_1#9_1.tag.fastq 2020-09-28 16:06 210M [   ] LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 29K [TXT] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv 2020-09-28 16:06 323K [TXT] 9876_2#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:06 323K [   ] 9876_1#57_1.notag.fastq.mapped 2020-09-28 16:06 233M [   ] 9876_2#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 31K [   ] 9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:06 45M [TXT] runPicard.py 2020-09-28 16:06 612 [TXT] TraDIS_plot_summary.pl 2020-09-28 16:06 2.5K [TXT] 9876_1#17_1.tag.fastq 2020-09-28 16:06 201M [   ] 9876_1#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:06 18K [   ] 9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:06 8.7K [   ] 9876_2#66_1.notag.fastq.mapped.bam 2020-09-28 16:06 41M [TXT] 9876_2#74_1.tag.fastq 2020-09-28 16:06 241M [   ] LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 32K [TXT] 9876_1#74_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:06 323K [   ] 9876_2#49_1.notag.fastq.mapped.bam 2020-09-28 16:06 56M [   ] 9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:06 42M [   ] 521350.se.markdup.bam 2020-09-28 16:06 4.3M [   ] 9876_2#74_1.notag.fastq.mapped 2020-09-28 16:06 319M [   ] 9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:06 46M [   ] 9876_1#49_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:06 43M [   ] LMN5_9876#33_merged.bam.corrected.bam.bai 2020-09-28 16:06 13K [   ] 9876_2#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 31K [   ] 9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:06 43M [   ] 9876_1#66_1.fastq 2020-09-28 16:06 203M [   ] sortbam.e 2020-09-28 16:06 1.0K [   ] 9876_1#25_1.notag.fastq 2020-09-28 16:06 122M [TXT] 9876_1#25_1.tag.fastq 2020-09-28 16:06 190M [   ] 9876_2#57_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:06 43M [   ] 9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:06 7.4K [   ] convertSmalt.e 2020-09-28 16:06 1.1K [   ] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:06 36M [   ] 9876_2#82_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:06 60M [   ] 9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:06 50M [TXT] 9876_2#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:06 323K [TXT] LMN7_9876#49_merged.bam.insertion.csv 2020-09-28 16:06 323K [   ] LMN21_9876#74_merged.bam.corrected.bam.bai 2020-09-28 16:06 16 [   ] 9876_1#49_1.notag.fastq 2020-09-28 16:06 175M [   ] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 68K [   ] 9876_2#1_1.fastq 2020-09-28 16:06 190M [   ] 9876_1#1_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:06 36M [TXT] 9876_2#90_1.tag.fastq 2020-09-28 16:06 332M [   ] 9876_1#90_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:06 65M [TXT] 9876_2#41_1.tag.fastq 2020-09-28 16:06 246M [TXT] LMN21_9876#66_merged.bam.insertion.csv 2020-09-28 16:06 323K [TXT] LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 16:05 444K [   ] LMN24_9876#90_merged.bam.corrected.bam 2020-09-28 16:05 131M [   ] filterFastQ.o 2020-09-28 16:05 7.2K [   ] 9876_1#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 8.4K [   ] LMN21_9876#66_merged.bam.corrected.bam.bai 2020-09-28 16:05 10K [   ] 9876_1#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 32K [   ] 9876_2#33_1.fastq 2020-09-28 16:05 199M [   ] 9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:05 45M [   ] 9876_1#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 82K [   ] LMN22_9876#74_merged.bam.corrected.bam 2020-09-28 16:05 90M [   ] 9876_1#57_1.fastq 2020-09-28 16:05 222M [   ] 9876_2#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 29K [   ] 9876_1#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 30K [   ] bamcheck.e 2020-09-28 16:05 0 [TXT] LMN5_9876#33_merged.bam.insertion.csv 2020-09-28 16:05 323K [   ] 9876_1#33_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:05 38M [   ] LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 82K [TXT] filterFastQ.py 2020-09-28 16:05 741 [   ] LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 32K [   ] err_4 2020-09-28 16:05 80 [   ] 9876_2#66_1.notag.fastq 2020-09-28 16:05 160M [   ] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 68K [   ] LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 102K [   ] 9876_1#9_1.notag.fastq.mapped 2020-09-28 16:05 251M [   ] 9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 13K [TXT] LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 496K [   ] 9876_2#57_1.notag.fastq 2020-09-28 16:05 174M [TXT] LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 552K [   ] 9876_2#1_1.notag.fastq 2020-09-28 16:05 144M [   ] LMN6_9876#41_merged.bam.corrected.bam 2020-09-28 16:05 101M [   ] 9876_1#17_1.notag.fastq.mapped 2020-09-28 16:05 54M [TXT] LMN4_9876#25_merged.csv 2020-09-28 16:05 496K [TXT] 9876_1#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K [   ] 9876_1#57_1.notag.fastq.mapped.bam 2020-09-28 16:05 54M [TXT] 9876_1#33_1.tag.fastq 2020-09-28 16:05 169M [   ] 9876_1#66_1.notag.fastq.mapped.bam 2020-09-28 16:05 40M [   ] LMN6_9876#41_merged.bam 2020-09-28 16:05 101M [   ] Ty2_baseline.fixed.tab 2020-09-28 16:05 421K [   ] 9876_2#82_1.notag.fastq 2020-09-28 16:05 263M [TXT] 9876_1#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K [TXT] LMN22_9876#74_merged.bam.insertion.csv 2020-09-28 16:05 323K [   ] 9876_2#33_1.notag.fastq.mapped.bam 2020-09-28 16:05 50M [   ] 9876_1#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 27K [   ] 9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 8.5K [   ] 9876_2#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 29K [   ] 9876_2#57_1.fastq 2020-09-28 16:05 228M [TXT] LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 502K [TXT] LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 500K [   ] 9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:05 36M [   ] 9876_2#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:05 27K [   ] runTradis.e 2020-09-28 16:05 29K [   ] LMN6_9876#41_merged.bam.corrected.bam.bai 2020-09-28 16:05 9.0K [TXT] 9876_1#49_1.tag.fastq 2020-09-28 16:05 203M [TXT] 9876_1#41_1.tag.fastq 2020-09-28 16:05 236M [   ] 9876_2#9_1.notag.fastq.mapped.bam 2020-09-28 16:05 59M [TXT] sortBAM.sh 2020-09-28 16:05 65 [   ] 9876_1#17_1.notag.fastq.mapped.bam 2020-09-28 16:05 11M [   ] 9876_1#66_1.notag.fastq 2020-09-28 16:05 153M [TXT] LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 16:05 430K [   ] 9876_2#17_1.fastq 2020-09-28 16:05 240M [TXT] LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 498K [   ] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam 2020-09-28 16:05 36M [   ] 9876_2#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam 2020-09-28 16:05 51M [   ] LMN1_9876#1_merged.bam.corrected.bam 2020-09-28 16:05 72M [   ] LMN24_9876#90_merged.bam.corrected.bam.bai 2020-09-28 16:05 9.6K [   ] 9876_1#1_1.notag.fastq.mapped 2020-09-28 16:05 196M [   ] 9876_1#41_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:05 50M [   ] 9876_1#74_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:05 45M [   ] Pseudomonas_aeruginosa_UCBPP-PA14_v1.embl 2020-09-28 16:05 15M [   ] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 13K [   ] LMN8_9876#57_merged.bam.corrected.bam.bai 2020-09-28 16:05 13K [   ] convertSmalt.o 2020-09-28 16:05 2.8K [   ] 9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 7.3K [   ] 9876_1#82_1.notag.fastq.mapped.bam.sort.bam 2020-09-28 16:05 59M [TXT] 9876_2#1_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K [   ] LMN4_9876#25_merged.bam 2020-09-28 16:05 71M [   ] 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