Index of /pub/users/ac19/TraDIS_Scripts_Carla

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]First_test/2020-09-28 19:19 -  
[DIR]Second_test/2020-09-28 19:20 -  
[DIR]scripts/2020-09-28 19:20 -  
[ ]bamcheck.e2020-09-28 16:05 0  
[ ]LMN21_9876#74_merged.bam.corrected.bam.bai2020-09-28 16:06 16  
[ ]LMN21_9876#74_merged.bam.corrected.bam2020-09-28 16:04 34  
[TXT]bamcheck.sh2020-09-28 16:02 53  
[TXT]checkSAM.sh2020-09-28 16:04 55  
[ ]job_name.e2020-09-28 16:05 56  
[TXT]filterFastQ.sh2020-09-28 16:03 61  
[TXT]removeTag.sh2020-09-28 16:02 63  
[TXT]sortBAM.sh2020-09-28 16:05 65  
[TXT]convertSmalt.sh2020-09-28 16:03 69  
[ ]err_42020-09-28 16:05 80  
[TXT]runSmalt.sh2020-09-28 16:04 116  
[TXT]runTradis.sh2020-09-28 16:04 176  
[TXT]runPicard.py2020-09-28 16:06 612  
[TXT]checkSAM.py2020-09-28 16:04 619  
[TXT]removeTag.py2020-09-28 16:04 650  
[TXT]filterFastQ.py2020-09-28 16:05 741  
[ ]sortbam.e2020-09-28 16:06 1.0K 
[ ]sortbam.o2020-09-28 16:04 1.0K 
[ ]bamcheck.o2020-09-28 16:06 1.0K 
[ ]runSmalt.o2020-09-28 16:05 1.0K 
[ ]runTradis.o2020-09-28 16:04 1.0K 
[TXT]tagBAM.py2020-09-28 16:04 1.0K 
[ ]convertSmalt.e2020-09-28 16:06 1.1K 
[ ]log_42020-09-28 16:03 1.2K 
[ ]entED_diff.R2020-09-28 16:06 1.8K 
[ ]tradis_essentiality_Modified_Cdiff6.R2020-09-28 16:04 1.8K 
[ ]job_name.o2020-09-28 16:03 2.0K 
[TXT]TraDIS_plot_summary.pl2020-09-28 16:06 2.5K 
[ ]tradis_essentiality.R2020-09-28 16:03 2.6K 
[ ]convertSmalt.o2020-09-28 16:05 2.8K 
[ ]tradis_analysis2020-09-28 16:04 3.1K 
[ ]typhi_tradis.R2020-09-28 16:03 3.4K 
[ ]filterFastQ.e2020-09-28 16:03 4.5K 
[ ]9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 5.6K 
[ ]Rplots.pdf2020-09-28 16:04 5.9K 
[ ]tradis_gene_insert_sites2020-09-28 16:03 7.2K 
[ ]filterFastQ.o2020-09-28 16:05 7.2K 
[ ]9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 7.2K 
[ ]9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 7.3K 
[ ]9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:06 7.4K 
[ ]LMN3_9876#17_merged.bam.corrected.bam.bai2020-09-28 16:02 7.5K 
[ ]9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:02 8.0K 
[ ]9876_2#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:04 8.4K 
[ ]9876_1#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 8.4K 
[ ]9876_2#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 8.5K 
[ ]9876_1#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:04 8.5K 
[ ]9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 8.5K 
[ ]LMN22_9876#74_merged.bam.corrected.bam.bai2020-09-28 16:04 8.5K 
[ ]9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:04 8.6K 
[ ]9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:06 8.7K 
[ ]9876_2#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:02 8.8K 
[ ]9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:03 8.9K 
[ ]LMN6_9876#41_merged.bam.corrected.bam.bai2020-09-28 16:05 9.0K 
[ ]LMN7_9876#49_merged.bam.corrected.bam.bai2020-09-28 16:02 9.3K 
[ ]9876_1#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 9.4K 
[ ]LMN24_9876#90_merged.bam.corrected.bam.bai2020-09-28 16:05 9.6K 
[ ]LMN4_9876#25_merged.bam.corrected.bam.bai2020-09-28 16:05 9.6K 
[ ]9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:02 9.6K 
[ ]LMN21_9876#66_merged.bam.corrected.bam.bai2020-09-28 16:05 10K 
[ ]LMN23_9876#82_merged.bam.corrected.bam.bai2020-09-28 16:05 11K 
[ ]521350.se.markdup.bam.bai2020-09-28 16:04 11K 
[ ]9876_1#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:04 13K 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 13K 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam.bai2020-09-28 16:04 13K 
[ ]9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:02 13K 
[ ]9876_2#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:03 13K 
[ ]LMN1_9876#1_merged.bam.corrected.bam.bai2020-09-28 16:02 13K 
[ ]LMN5_9876#33_merged.bam.corrected.bam.bai2020-09-28 16:06 13K 
[ ]9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:02 13K 
[ ]9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:04 13K 
[ ]LMN2_9876#9_merged.bam.corrected.bam.bai2020-09-28 16:05 13K 
[ ]9876_1#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:03 13K 
[ ]9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai2020-09-28 16:05 13K 
[ ]LMN8_9876#57_merged.bam.corrected.bam.bai2020-09-28 16:05 13K 
[ ]LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.pdf2020-09-28 16:04 16K 
[ ]runSmalt.e2020-09-28 16:06 16K 
[ ]9876_1#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 18K 
[ ]9876_2#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:03 18K 
[ ]9876_2#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 18K 
[ ]9876_1#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:06 18K 
[ ]9876_1#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 19K 
[ ]9876_2#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 19K 
[ ]9876_1#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:03 21K 
[ ]9876_1#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:03 21K 
[ ]9876_2#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:02 21K 
[ ]9876_2#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 22K 
[ ]9876_2#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:05 26K 
[ ]9876_1#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:02 26K 
[ ]9876_1#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:06 26K 
[ ]9876_2#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:05 27K 
[ ]9876_1#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 27K 
[ ]9876_1#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 27K 
[ ]9876_1#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:05 27K 
[ ]9876_2#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 27K 
[ ]9876_2#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:02 28K 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 28K 
[ ]9876_1#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:03 28K 
[ ]9876_1#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 28K 
[ ]9876_2#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:02 28K 
[ ]9876_1#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:06 28K 
[ ]LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 29K 
[ ]9876_2#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 29K 
[ ]runTradis.e2020-09-28 16:05 29K 
[ ]9876_1#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:03 29K 
[ ]9876_2#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 29K 
[ ]9876_2#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 29K 
[ ]9876_2#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 29K 
[ ]9876_1#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:02 29K 
[ ]LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:06 29K 
[ ]LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:02 29K 
[ ]LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:03 30K 
[ ]9876_1#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 30K 
[ ]LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 30K 
[ ]9876_2#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:06 31K 
[ ]9876_1#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:03 31K 
[ ]9876_1#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 31K 
[ ]9876_2#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:06 31K 
[ ]9876_2#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:03 31K 
[ ]9876_1#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:04 31K 
[ ]9876_2#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck2020-09-28 16:02 31K 
[ ]LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 32K 
[ ]9876_1#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 32K 
[ ]LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:06 32K 
[ ]9876_2#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:03 32K 
[ ]LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 34K 
[ ]9876_1#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:02 67K 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:06 68K 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 68K 
[TXT]LMN22_9876#74_vs_LMN24_9876#90_merged_PA14.csv2020-09-28 16:04 76K 
[ ]LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 82K 
[ ]9876_1#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 82K 
[ ]9876_2#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:02 83K 
[ ]9876_1#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 84K 
[ ]9876_2#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 85K 
[ ]9876_1#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 94K 
[ ]9876_2#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:02 95K 
[ ]LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:05 102K 
[ ]LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:04 107K 
[ ]LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz2020-09-28 16:02 119K 
[TXT]LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv2020-09-28 16:04 142K 
[TXT]9876_1#1_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:03 323K 
[TXT]9876_1#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:02 323K 
[TXT]9876_1#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]9876_1#25_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_1#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_1#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_1#49_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]9876_1#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_1#66_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_1#74_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:06 323K 
[TXT]9876_1#82_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:02 323K 
[TXT]9876_1#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv2020-09-28 16:06 323K 
[TXT]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_2#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:03 323K 
[TXT]9876_2#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:06 323K 
[TXT]9876_2#25_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]9876_2#33_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:06 323K 
[TXT]9876_2#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_2#49_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]9876_2#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]9876_2#66_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:02 323K 
[TXT]9876_2#74_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]9876_2#82_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:03 323K 
[TXT]9876_2#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv2020-09-28 16:03 323K 
[TXT]LMN1_9876#1_merged.bam.insertion.csv2020-09-28 16:03 323K 
[TXT]LMN2_9876#9_merged.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]LMN3_9876#17_merged.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]LMN4_9876#25_merged.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]LMN5_9876#33_merged.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]LMN6_9876#41_merged.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]LMN7_9876#49_merged.bam.insertion.csv2020-09-28 16:06 323K 
[TXT]LMN8_9876#57_merged.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]LMN21_9876#66_merged.bam.insertion.csv2020-09-28 16:06 323K 
[TXT]LMN21_9876#74_merged.bam.insertion.csv2020-09-28 16:02 323K 
[TXT]LMN22_9876#74_merged.bam.insertion.csv2020-09-28 16:05 323K 
[TXT]LMN23_9876#82_merged.bam.insertion.csv2020-09-28 16:04 323K 
[TXT]LMN24_9876#90_merged.bam.insertion.csv2020-09-28 16:04 323K 
[ ]Ty2_baseline.fixed.tab2020-09-28 16:05 421K 
[TXT]LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv2020-09-28 16:05 430K 
[TXT]LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv2020-09-28 16:05 444K 
[TXT]LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv2020-09-28 16:03 483K 
[TXT]LMN3_9876#17_merged.csv2020-09-28 16:04 495K 
[TXT]LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:05 496K 
[TXT]LMN4_9876#25_merged.csv2020-09-28 16:05 496K 
[TXT]LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:05 498K 
[TXT]LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:03 500K 
[TXT]LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:05 500K 
[TXT]LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:03 500K 
[TXT]LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:05 500K 
[TXT]LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:04 501K 
[TXT]LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:05 502K 
[TXT]LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:04 537K 
[TXT]LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:03 551K 
[TXT]LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:05 552K 
[TXT]LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv2020-09-28 16:02 559K 
[ ]Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.sma2020-09-28 16:04 2.5M 
[ ]521350.se.markdup.bam2020-09-28 16:06 4.3M 
[ ]Pseudomonas_aeruginosa_UCBPP-PA14_v1.fa2020-09-28 16:05 6.3M 
[ ]9876_1#17_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:02 8.8M 
[ ]9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:04 8.8M 
[ ]Pseudomonas_aeruginosa_UCBPP-PA14_v1.gff2020-09-28 16:04 11M 
[ ]9876_1#17_1.notag.fastq.mapped.bam2020-09-28 16:05 11M 
[ ]Pseudomonas_aeruginosa_UCBPP-PA14_v1.embl2020-09-28 16:05 15M 
[ ]Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.smi2020-09-28 16:04 21M 
[ ]9876_1#25_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:02 30M 
[ ]9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:03 30M 
[ ]9876_1#66_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:04 35M 
[ ]9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:04 35M 
[ ]9876_1#1_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:06 36M 
[ ]9876_1#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:04 36M 
[ ]9876_2#66_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:03 36M 
[ ]9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 36M 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:04 36M 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:06 36M 
[ ]9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam2020-09-28 16:05 36M 
[ ]9876_1#33_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 38M 
[ ]9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 38M 
[ ]9876_1#17_1.notag.fastq2020-09-28 16:04 38M 
[ ]9876_2#33_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 38M 
[ ]9876_2#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:03 38M 
[ ]9876_1#25_1.notag.fastq.mapped.bam2020-09-28 16:02 39M 
[ ]9876_1#66_1.notag.fastq.mapped.bam2020-09-28 16:05 40M 
[ ]9876_2#25_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:02 41M 
[ ]9876_2#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:03 41M 
[ ]9876_2#66_1.notag.fastq.mapped.bam2020-09-28 16:06 41M 
[ ]9876_2#17_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:03 42M 
[ ]9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:06 42M 
[ ]9876_1#57_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 43M 
[ ]9876_1#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:03 43M 
[ ]9876_1#49_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:06 43M 
[ ]9876_1#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 43M 
[ ]9876_2#57_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:06 43M 
[ ]9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:06 43M 
[ ]9876_2#49_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:04 43M 
[ ]9876_2#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 43M 
[ ]9876_1#74_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 45M 
[ ]9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:06 45M 
[ ]9876_1#9_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 45M 
[ ]9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 45M 
[ ]9876_2#74_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:02 45M 
[ ]9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 45M 
[ ]9876_1#1_1.notag.fastq.mapped.bam2020-09-28 16:03 46M 
[ ]9876_2#9_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:03 46M 
[ ]9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:06 46M 
[ ]9876_2#1_1.notag.fastq.mapped.bam2020-09-28 16:04 47M 
[ ]9876_1#74_1.notag.fastq.mapped.bam2020-09-28 16:04 47M 
[ ]9876_2#74_1.notag.fastq.mapped.bam2020-09-28 16:02 48M 
[ ]9876_1#33_1.notag.fastq.mapped.bam2020-09-28 16:02 49M 
[ ]9876_2#33_1.notag.fastq.mapped.bam2020-09-28 16:05 50M 
[ ]9876_1#41_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 50M 
[ ]9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:06 50M 
[ ]LMN3_9876#17_merged.bam2020-09-28 16:03 50M 
[ ]LMN3_9876#17_merged.bam.corrected.bam2020-09-28 16:05 50M 
[ ]9876_2#41_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:03 51M 
[ ]9876_2#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 51M 
[ ]9876_2#17_1.notag.fastq.mapped.bam2020-09-28 16:05 53M 
[ ]9876_1#17_1.notag.fastq.mapped2020-09-28 16:05 54M 
[ ]9876_2#25_1.notag.fastq.mapped.bam2020-09-28 16:05 54M 
[ ]9876_1#57_1.notag.fastq.mapped.bam2020-09-28 16:05 54M 
[ ]9876_1#49_1.notag.fastq.mapped.bam2020-09-28 16:04 55M 
[ ]9876_2#57_1.notag.fastq.mapped.bam2020-09-28 16:03 55M 
[ ]9876_2#49_1.notag.fastq.mapped.bam2020-09-28 16:06 56M 
[ ]9876_1#9_1.notag.fastq.mapped.bam2020-09-28 16:03 57M 
[ ]9876_2#9_1.notag.fastq.mapped.bam2020-09-28 16:05 59M 
[ ]9876_1#82_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:05 59M 
[ ]9876_1#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:05 59M 
[ ]9876_2#82_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:06 60M 
[ ]9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:04 60M 
[ ]9876_1#90_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:06 65M 
[ ]9876_1#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:04 65M 
[ ]9876_2#90_1.notag.fastq.mapped.bam.sort.bam2020-09-28 16:02 66M 
[ ]9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam2020-09-28 16:03 66M 
[ ]9876_1#82_1.notag.fastq.mapped.bam2020-09-28 16:04 66M 
[ ]9876_1#41_1.notag.fastq.mapped.bam2020-09-28 16:04 67M 
[ ]9876_2#82_1.notag.fastq.mapped.bam2020-09-28 16:04 68M 
[ ]9876_2#41_1.notag.fastq.mapped.bam2020-09-28 16:03 68M 
[ ]LMN4_9876#25_merged.bam2020-09-28 16:05 71M 
[ ]LMN4_9876#25_merged.bam.corrected.bam2020-09-28 16:05 71M 
[ ]LMN21_9876#66_merged.bam2020-09-28 16:04 71M 
[ ]LMN21_9876#66_merged.bam.corrected.bam2020-09-28 16:05 71M 
[ ]LMN1_9876#1_merged.bam2020-09-28 16:03 72M 
[ ]LMN1_9876#1_merged.bam.corrected.bam2020-09-28 16:05 72M 
[ ]9876_1#90_1.notag.fastq.mapped.bam2020-09-28 16:05 72M 
[ ]9876_2#90_1.notag.fastq.mapped.bam2020-09-28 16:04 74M 
[ ]LMN5_9876#33_merged.bam2020-09-28 16:04 76M 
[ ]LMN5_9876#33_merged.bam.corrected.bam2020-09-28 16:04 76M 
[ ]LMN8_9876#57_merged.bam2020-09-28 16:05 86M 
[ ]LMN8_9876#57_merged.bam.corrected.bam2020-09-28 16:04 86M 
[ ]LMN7_9876#49_merged.bam2020-09-28 16:02 86M 
[ ]LMN7_9876#49_merged.bam.corrected.bam2020-09-28 16:02 86M 
[ ]LMN22_9876#74_merged.bam2020-09-28 16:03 90M 
[ ]LMN22_9876#74_merged.bam.corrected.bam2020-09-28 16:05 90M 
[ ]LMN2_9876#9_merged.bam2020-09-28 16:03 91M 
[ ]LMN2_9876#9_merged.bam.corrected.bam2020-09-28 16:04 91M 
[ ]LMN6_9876#41_merged.bam2020-09-28 16:05 101M 
[ ]LMN6_9876#41_merged.bam.corrected.bam2020-09-28 16:05 101M 
[ ]LMN23_9876#82_merged.bam2020-09-28 16:03 120M 
[ ]LMN23_9876#82_merged.bam.corrected.bam2020-09-28 16:04 120M 
[ ]9876_1#25_1.notag.fastq2020-09-28 16:06 122M 
[ ]LMN24_9876#90_merged.bam2020-09-28 16:03 131M 
[ ]LMN24_9876#90_merged.bam.corrected.bam2020-09-28 16:05 131M 
[ ]9876_1#1_1.notag.fastq2020-09-28 16:04 138M 
[ ]9876_2#1_1.notag.fastq2020-09-28 16:05 144M 
[ ]9876_1#33_1.notag.fastq2020-09-28 16:04 145M 
[ ]9876_2#33_1.notag.fastq2020-09-28 16:02 151M 
[ ]9876_1#66_1.notag.fastq2020-09-28 16:05 153M 
[ ]9876_2#66_1.notag.fastq2020-09-28 16:05 160M 
[TXT]9876_1#1_1.tag.fastq2020-09-28 16:04 161M 
[ ]9876_1#57_1.notag.fastq2020-09-28 16:05 167M 
[TXT]9876_2#1_1.tag.fastq2020-09-28 16:02 167M 
[TXT]9876_1#33_1.tag.fastq2020-09-28 16:05 169M 
[ ]9876_2#25_1.notag.fastq2020-09-28 16:04 171M 
[ ]9876_2#57_1.notag.fastq2020-09-28 16:05 174M 
[ ]9876_1#49_1.notag.fastq2020-09-28 16:06 175M 
[TXT]9876_2#33_1.tag.fastq2020-09-28 16:02 176M 
[TXT]9876_1#66_1.tag.fastq2020-09-28 16:04 178M 
[ ]9876_1#25_1.notag.fastq.mapped2020-09-28 16:04 179M 
[ ]9876_2#17_1.notag.fastq2020-09-28 16:04 181M 
[ ]9876_1#9_1.notag.fastq2020-09-28 16:06 181M 
[ ]9876_2#49_1.notag.fastq2020-09-28 16:04 183M 
[ ]9876_1#1_1.fastq2020-09-28 16:02 185M 
[TXT]9876_2#66_1.tag.fastq2020-09-28 16:04 185M 
[ ]9876_2#9_1.notag.fastq2020-09-28 16:04 189M 
[TXT]9876_1#25_1.tag.fastq2020-09-28 16:06 190M 
[ ]9876_2#1_1.fastq2020-09-28 16:06 190M 
[ ]9876_1#33_1.fastq2020-09-28 16:04 193M 
[TXT]9876_1#57_1.tag.fastq2020-09-28 16:05 194M 
[ ]9876_1#1_1.notag.fastq.mapped2020-09-28 16:05 196M 
[TXT]9876_2#25_1.tag.fastq2020-09-28 16:02 198M 
[ ]9876_2#33_1.fastq2020-09-28 16:05 199M 
[ ]9876_1#74_1.notag.fastq2020-09-28 16:04 200M 
[TXT]9876_2#57_1.tag.fastq2020-09-28 16:02 201M 
[TXT]9876_1#17_1.tag.fastq2020-09-28 16:06 201M 
[ ]9876_1#66_1.fastq2020-09-28 16:06 203M 
[TXT]9876_1#49_1.tag.fastq2020-09-28 16:05 203M 
[ ]9876_1#41_1.notag.fastq2020-09-28 16:06 203M 
[ ]9876_2#1_1.notag.fastq.mapped2020-09-28 16:02 204M 
[ ]9876_1#33_1.notag.fastq.mapped2020-09-28 16:05 205M 
[ ]9876_2#66_1.fastq2020-09-28 16:04 208M 
[ ]9876_2#74_1.notag.fastq2020-09-28 16:03 208M 
[TXT]9876_2#17_1.tag.fastq2020-09-28 16:04 210M 
[TXT]9876_1#9_1.tag.fastq2020-09-28 16:06 210M 
[ ]9876_2#41_1.notag.fastq2020-09-28 16:03 212M 
[TXT]9876_2#49_1.tag.fastq2020-09-28 16:05 212M 
[ ]9876_2#33_1.notag.fastq.mapped2020-09-28 16:04 214M 
[ ]9876_1#25_1.fastq2020-09-28 16:02 218M 
[TXT]9876_2#9_1.tag.fastq2020-09-28 16:04 219M 
[ ]9876_1#66_1.notag.fastq.mapped2020-09-28 16:04 221M 
[ ]9876_1#57_1.fastq2020-09-28 16:05 222M 
[ ]9876_2#25_1.fastq2020-09-28 16:04 224M 
[ ]9876_2#57_1.fastq2020-09-28 16:05 228M 
[ ]9876_2#66_1.notag.fastq.mapped2020-09-28 16:04 230M 
[TXT]9876_1#74_1.tag.fastq2020-09-28 16:02 231M 
[ ]9876_1#57_1.notag.fastq.mapped2020-09-28 16:06 233M 
[ ]9876_1#17_1.fastq2020-09-28 16:03 234M 
[ ]9876_1#49_1.fastq2020-09-28 16:04 234M 
[TXT]9876_1#41_1.tag.fastq2020-09-28 16:05 236M 
[ ]9876_2#17_1.fastq2020-09-28 16:05 240M 
[TXT]9876_2#74_1.tag.fastq2020-09-28 16:06 241M 
[ ]9876_2#49_1.fastq2020-09-28 16:03 242M 
[ ]9876_2#57_1.notag.fastq.mapped2020-09-28 16:02 242M 
[ ]9876_1#9_1.fastq2020-09-28 16:05 243M 
[TXT]9876_2#41_1.tag.fastq2020-09-28 16:06 246M 
[ ]9876_2#9_1.fastq2020-09-28 16:02 250M 
[ ]9876_2#25_1.notag.fastq.mapped2020-09-28 16:03 250M 
[ ]9876_1#49_1.notag.fastq.mapped2020-09-28 16:04 251M 
[ ]9876_1#9_1.notag.fastq.mapped2020-09-28 16:05 251M 
[ ]9876_1#82_1.notag.fastq2020-09-28 16:04 252M 
[ ]9876_2#17_1.notag.fastq.mapped2020-09-28 16:02 256M 
[ ]9876_2#9_1.notag.fastq.mapped2020-09-28 16:05 262M 
[ ]9876_2#49_1.notag.fastq.mapped2020-09-28 16:03 262M 
[ ]9876_2#82_1.notag.fastq2020-09-28 16:05 263M 
[ ]9876_1#74_1.fastq2020-09-28 16:06 267M 
[ ]9876_1#41_1.fastq2020-09-28 16:05 270M 
[ ]9876_2#74_1.fastq2020-09-28 16:03 274M 
[ ]9876_1#90_1.notag.fastq2020-09-28 16:03 275M 
[ ]9876_2#41_1.fastq2020-09-28 16:03 278M 
[ ]9876_2#90_1.notag.fastq2020-09-28 16:04 286M 
[TXT]9876_1#82_1.tag.fastq2020-09-28 16:02 292M 
[ ]9876_1#41_1.notag.fastq.mapped2020-09-28 16:04 303M 
[TXT]9876_2#82_1.tag.fastq2020-09-28 16:03 305M 
[ ]9876_1#74_1.notag.fastq.mapped2020-09-28 16:03 306M 
[ ]9876_2#41_1.notag.fastq.mapped2020-09-28 16:03 316M 
[TXT]9876_1#90_1.tag.fastq2020-09-28 16:05 319M 
[ ]9876_2#74_1.notag.fastq.mapped2020-09-28 16:06 319M 
[TXT]9876_2#90_1.tag.fastq2020-09-28 16:06 332M 
[ ]9876_1#82_1.fastq2020-09-28 16:02 334M 
[ ]9876_2#82_1.fastq2020-09-28 16:03 345M 
[ ]9876_1#90_1.fastq2020-09-28 16:04 364M 
[ ]9876_2#90_1.fastq2020-09-28 16:02 376M 
[ ]9876_1#82_1.notag.fastq.mapped2020-09-28 16:04 386M 
[ ]9876_2#82_1.notag.fastq.mapped2020-09-28 16:04 403M 
[ ]9876_1#90_1.notag.fastq.mapped2020-09-28 16:05 426M 
[ ]9876_2#90_1.notag.fastq.mapped2020-09-28 16:03 444M 
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