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First_test/ 2020-09-28 19:19 -
Second_test/ 2020-09-28 19:20 -
scripts/ 2020-09-28 19:20 -
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bamcheck.e 2020-09-28 16:05 0
LMN21_9876#74_merged.bam.corrected.bam.bai 2020-09-28 16:06 16
LMN21_9876#74_merged.bam.corrected.bam 2020-09-28 16:04 34
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bamcheck.sh 2020-09-28 16:02 53
checkSAM.sh 2020-09-28 16:04 55
job_name.e 2020-09-28 16:05 56
filterFastQ.sh 2020-09-28 16:03 61
removeTag.sh 2020-09-28 16:02 63
sortBAM.sh 2020-09-28 16:05 65
convertSmalt.sh 2020-09-28 16:03 69
err_4 2020-09-28 16:05 80
runSmalt.sh 2020-09-28 16:04 116
runTradis.sh 2020-09-28 16:04 176
runPicard.py 2020-09-28 16:06 612
checkSAM.py 2020-09-28 16:04 619
removeTag.py 2020-09-28 16:04 650
filterFastQ.py 2020-09-28 16:05 741
sortbam.e 2020-09-28 16:06 1.0K
sortbam.o 2020-09-28 16:04 1.0K
bamcheck.o 2020-09-28 16:06 1.0K
runSmalt.o 2020-09-28 16:05 1.0K
runTradis.o 2020-09-28 16:04 1.0K
tagBAM.py 2020-09-28 16:04 1.0K
convertSmalt.e 2020-09-28 16:06 1.1K
log_4 2020-09-28 16:03 1.2K
entED_diff.R 2020-09-28 16:06 1.8K
tradis_essentiality_Modified_Cdiff6.R 2020-09-28 16:04 1.8K
job_name.o 2020-09-28 16:03 2.0K
TraDIS_plot_summary.pl 2020-09-28 16:06 2.5K
tradis_essentiality.R 2020-09-28 16:03 2.6K
convertSmalt.o 2020-09-28 16:05 2.8K
tradis_analysis 2020-09-28 16:04 3.1K
typhi_tradis.R 2020-09-28 16:03 3.4K
filterFastQ.e 2020-09-28 16:03 4.5K
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 5.6K
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Rplots.pdf 2020-09-28 16:04 5.9K
tradis_gene_insert_sites 2020-09-28 16:03 7.2K
filterFastQ.o 2020-09-28 16:05 7.2K
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 7.2K
9876_1#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 7.3K
9876_2#74_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:06 7.4K
LMN3_9876#17_merged.bam.corrected.bam.bai 2020-09-28 16:02 7.5K
9876_1#25_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:02 8.0K
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9876_1#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 8.4K
9876_2#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 8.5K
9876_1#49_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:04 8.5K
9876_1#41_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 8.5K
LMN22_9876#74_merged.bam.corrected.bam.bai 2020-09-28 16:04 8.5K
9876_1#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:04 8.6K
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:06 8.7K
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9876_2#66_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:03 8.9K
LMN6_9876#41_merged.bam.corrected.bam.bai 2020-09-28 16:05 9.0K
LMN7_9876#49_merged.bam.corrected.bam.bai 2020-09-28 16:02 9.3K
9876_1#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 9.4K
LMN24_9876#90_merged.bam.corrected.bam.bai 2020-09-28 16:05 9.6K
LMN4_9876#25_merged.bam.corrected.bam.bai 2020-09-28 16:05 9.6K
9876_2#82_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:02 9.6K
LMN21_9876#66_merged.bam.corrected.bam.bai 2020-09-28 16:05 10K
LMN23_9876#82_merged.bam.corrected.bam.bai 2020-09-28 16:05 11K
521350.se.markdup.bam.bai 2020-09-28 16:04 11K
9876_1#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:04 13K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 13K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.corrected.bam.bai 2020-09-28 16:04 13K
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:02 13K
9876_2#33_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:03 13K
LMN1_9876#1_merged.bam.corrected.bam.bai 2020-09-28 16:02 13K
LMN5_9876#33_merged.bam.corrected.bam.bai 2020-09-28 16:06 13K
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:02 13K
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:04 13K
LMN2_9876#9_merged.bam.corrected.bam.bai 2020-09-28 16:05 13K
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:03 13K
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.bai 2020-09-28 16:05 13K
LMN8_9876#57_merged.bam.corrected.bam.bai 2020-09-28 16:05 13K
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.pdf 2020-09-28 16:04 16K
runSmalt.e 2020-09-28 16:06 16K
9876_1#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 18K
9876_2#74_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:03 18K
9876_2#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 18K
9876_1#66_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:06 18K
9876_1#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 19K
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 19K
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:03 21K
9876_1#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:03 21K
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:02 21K
9876_2#82_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 22K
9876_2#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:05 26K
9876_1#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:02 26K
9876_1#41_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:06 26K
9876_2#25_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:05 27K
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9876_1#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 27K
9876_1#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 27K
9876_1#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:05 27K
9876_2#74_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 27K
9876_2#49_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:02 28K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 28K
9876_1#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:03 28K
9876_1#1_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 28K
9876_2#66_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:02 28K
9876_1#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 28K
LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 29K
9876_2#90_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 29K
runTradis.e 2020-09-28 16:05 29K
9876_1#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:03 29K
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 29K
9876_2#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 29K
9876_2#82_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 29K
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:02 29K
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 29K
LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:02 29K
LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:03 30K
9876_1#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 30K
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 30K
9876_2#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 31K
9876_1#49_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:03 31K
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 31K
9876_2#25_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 31K
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:03 31K
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:04 31K
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.bamcheck 2020-09-28 16:02 31K
LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 32K
9876_1#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 32K
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 32K
9876_2#41_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:03 32K
LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 34K
9876_1#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:02 67K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:06 68K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 68K
LMN22_9876#74_vs_LMN24_9876#90_merged_PA14.csv 2020-09-28 16:04 76K
LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 82K
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 82K
9876_2#9_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:02 83K
9876_1#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 84K
9876_2#33_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 85K
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 94K
9876_2#57_1.notag.fastq.mapped.bam.sort.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:02 95K
LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:05 102K
LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:04 107K
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.gz 2020-09-28 16:02 119K
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 16:04 142K
9876_1#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:04 323K
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9876_1#25_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K
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9876_1#41_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K
9876_1#49_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:04 323K
9876_1#57_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K
9876_1#66_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K
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9876_1#90_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:04 323K
9876_1#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:02 323K
9876_2#17_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:06 323K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.corrected.bam.insertion.csv 2020-09-28 16:06 323K
9876_2#1_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:05 323K
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9876_2#9_1.notag.fastq.mapped.bam.sort.bam.insertion.csv 2020-09-28 16:03 323K
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LMN21_9876#66_merged.bam.insertion.csv 2020-09-28 16:06 323K
LMN21_9876#74_merged.bam.insertion.csv 2020-09-28 16:02 323K
LMN22_9876#74_merged.bam.insertion.csv 2020-09-28 16:05 323K
LMN23_9876#82_merged.bam.insertion.csv 2020-09-28 16:04 323K
LMN24_9876#90_merged.bam.insertion.csv 2020-09-28 16:04 323K
LMN2_9876#9_merged.bam.insertion.csv 2020-09-28 16:04 323K
LMN3_9876#17_merged.bam.insertion.csv 2020-09-28 16:05 323K
LMN4_9876#25_merged.bam.insertion.csv 2020-09-28 16:04 323K
LMN5_9876#33_merged.bam.insertion.csv 2020-09-28 16:05 323K
LMN6_9876#41_merged.bam.insertion.csv 2020-09-28 16:04 323K
LMN7_9876#49_merged.bam.insertion.csv 2020-09-28 16:06 323K
LMN8_9876#57_merged.bam.insertion.csv 2020-09-28 16:04 323K
Ty2_baseline.fixed.tab 2020-09-28 16:05 421K
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 16:05 430K
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 16:05 444K
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csvLMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv.output.csv 2020-09-28 16:03 483K
LMN3_9876#17_merged.csv 2020-09-28 16:04 495K
LMN3_9876#17_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 496K
LMN4_9876#25_merged.csv 2020-09-28 16:05 496K
LMN22_9876#74_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 498K
LMN4_9876#25_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:03 500K
LMN7_9876#49_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 500K
LMN6_9876#41_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:03 500K
LMN24_9876#90_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 500K
LMN21_9876#66_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:04 501K
LMN23_9876#82_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 502K
LMN1_9876#1_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:04 537K
LMN2_9876#9_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:03 551K
LMN5_9876#33_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:05 552K
LMN8_9876#57_merged.bam.Pseudomonas_aeruginosa_UCBPP-PA14_v1.insert_site_plot.csv 2020-09-28 16:02 559K
Pseudomonas_aeruginosa_UCBPP-PA14_v1.index.sma 2020-09-28 16:04 2.5M
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