ALIGNMENT 0 Y12-10a01.p1k chr04 899 791 531194 531193 C 109 0.00 1298 accept 0 ALIGNMENT 708 Y12-10a01.q1k chr04 35 1168 523218 524353 F 1134 88.27 1373 accept 0 ALIGNMENT 514 Y12-10a01.p1k chr04 790 14 531193 531966 C 777 90.09 1298 accept 0 ALIGNMENT 0 Y12-10a01.p1k chr04 899 791 535079 535078 C 109 0.00 1298 reject_low 2 ALIGNMENT 476 Y12-10a01.p1k chr04 1121 14 526985 528081 C 1108 82.85 1298 reject_low 1 ALIGNMENT 511 Y12-10a01.p1k chr04 790 14 535078 535851 C 777 89.96 1298 reject_low 2 ALIGNMENT 614 Y12-10a02.q1k chr14 1169 255 342354 343276 C 915 90.71 1404 accept 0 ALIGNMENT 957 Y12-10a02.p1k chr14 20 1203 340036 341205 F 1184 95.27 1397 accept 0 ALIGNMENT 1025 Y12-10a03.p1k chr12 14 1218 269294 270494 F 1205 96.27 1380 accept 0 ALIGNMENT 508 Y12-10a03.q1k chr12 672 35 275094 275723 C 638 94.98 1448 accept 0 ALIGNMENT 987 Y12-10a04.q1k chr08 36 1231 321498 322708 F 1196 95.57 1369 accept 0 ALIGNMENT 0 Y12-10a04.p1k chr04 877 482 1183393 1183392 C 396 0.00 1424 reject_low 1 ALIGNMENT 181 Y12-10a04.p1k chr04 481 75 1183392 1183798 C 407 81.82 1424 reject_low 1 ALIGNMENT 1080 Y12-10a04.p1k chr08 1331 19 324921 326235 C 1313 94.67 1424 accept 0 ALIGNMENT 1022 Y12-10a06.p1k chr05 18 1253 368453 369696 F 1236 95.79 1434 accept 0 ALIGNMENT 411 Y12-10a06.q1k chr05 532 40 372081 372571 C 493 96.75 1444 accept 0 ALIGNMENT 667 Y12-10a08.q1k chr04 32 740 301921 302627 F 709 98.73 1535 accept_chi 1 ALIGNMENT 0 Y12-10a08.p1k chr15 62 422 427961 427960 F 361 0.00 1364 reject_low 3 ALIGNMENT 0 Y12-10a08.p1k chr11 62 422 576132 576131 F 361 0.00 1364 reject_low 2 ALIGNMENT 0 Y12-10a08.p1k chr15 454 873 427937 427936 F 420 0.00 1364 reject_low 4 ALIGNMENT 27 Y12-10a08.p1k chr11 423 453 576132 576162 F 31 100.00 1364 reject_low 2 ALIGNMENT 0 Y12-10a08.p1k chr15 454 873 427991 427990 F 420 0.00 1364 reject_low 3 ALIGNMENT 1016 Y12-10a08.p1k chr09 1224 20 375822 377042 C 1205 96.35 1364 accept_chi 0 ALIGNMENT 0 Y12-10a08.p1k chr07 422 62 70228 70227 C 361 0.00 1364 reject_low 5 ALIGNMENT 0 Y12-10a08.p1k chr15 62 422 427907 427906 F 361 0.00 1364 reject_low 4 ALIGNMENT 21 Y12-10a08.p1k chr15 423 453 427907 427937 F 31 93.55 1364 reject_low 4 ALIGNMENT 20 Y12-10a08.p1k chr07 451 423 70199 70227 C 29 93.10 1364 reject_low 5 ALIGNMENT 27 Y12-10a08.p1k chr15 423 453 427961 427991 F 31 100.00 1364 reject_low 3 ALIGNMENT 0 Y12-10a08.p1k chr11 454 873 576162 576161 F 420 0.00 1364 reject_low 2 ALIGNMENT 0 Y12-10a08.p1k chr07 873 452 70200 70199 C 422 0.00 1364 reject_low 5 ALIGNMENT 733 Y12-10a09.q1k chr07 32 834 664895 665696 F 803 98.01 1421 accept 0 ALIGNMENT 139 Y12-10a09.p1k chr16 875 271 747754 748358 C 605 75.87 1377 reject_low 1 ALIGNMENT 0 Y12-10a09.p1k chr16 270 62 748359 748358 C 209 0.00 1377 reject_low 1 ALIGNMENT 1028 Y12-10a09.p1k chr07 1199 26 668342 669516 C 1174 96.85 1377 accept 0 ALIGNMENT 969 Y12-10a10.p1k chr14 1164 15 433683 434831 C 1150 96.09 1400 accept 0 ALIGNMENT 688 Y12-10a10.q1k chr14 29 866 432228 433061 F 838 95.35 1415 accept 0 ALIGNMENT 997 Y12-10a11.p1k chr04 23 1228 953636 954840 F 1206 95.52 1363 accept 0 ALIGNMENT 687 Y12-10a11.q1k chr04 818 37 958583 959364 C 782 97.19 1429 accept 0 ALIGNMENT 966 Y12-10a12.p1k chr15 18 1189 35067 36259 F 1172 95.99 1358 accept 0 ALIGNMENT 637 Y12-10a12.q1k chr15 734 31 37543 38246 C 704 97.30 1467 accept 0 ALIGNMENT 907 Y12-10a13.q1k chr08 31 1043 393150 394161 F 1013 97.73 1410 accept 0 ALIGNMENT 1034 Y12-10a13.p1k chr08 1303 18 397320 398604 C 1286 94.56 1390 accept 0 ALIGNMENT 906 Y12-10a14.p1k chr03 1075 23 74584 75664 C 1053 96.77 1329 accept 0 ALIGNMENT 967 Y12-10a14.q1k chr03 42 1112 71649 72735 F 1071 97.48 1340 accept 0 ALIGNMENT 1014 Y12-10a15.p1k chr04 19 1216 821081 822276 F 1198 96.24 1338 accept 0 ALIGNMENT 848 Y12-10a15.q1k chr04 1128 35 824010 825088 C 1094 94.61 1439 accept 0 ALIGNMENT 987 Y12-10a16.q1k chr04 1200 39 338482 339654 C 1162 96.39 1372 accept 0 ALIGNMENT 0 Y12-10a16.p1k chr12 380 889 505641 505640 F 510 0.00 1342 reject_low 1 ALIGNMENT 101 Y12-10a16.p1k chr12 72 379 505334 505641 F 308 78.25 1342 reject_low 1 ALIGNMENT 968 Y12-10a16.p1k chr04 22 1145 335575 336713 F 1124 96.62 1342 accept 0 ALIGNMENT 0 Y12-10a17.p1k chr15 492 62 595133 595132 C 431 0.00 1326 reject_low 32 ALIGNMENT 177 Y12-10a17.p1k chr07 820 1076 823000 823256 F 257 92.22 1326 reject_low 52 ALIGNMENT 0 Y12-10a17.p1k chr13 852 800 189758 189757 C 53 0.00 1326 reject_low 6 ALIGNMENT 962 Y12-10a17.q1k chr16 37 1073 58283 59321 F 1037 98.36 1379 reject_low 22 ALIGNMENT 968 Y12-10a17.q1k chr16 1073 37 807692 808730 C 1037 98.55 1379 reject_low 16 ALIGNMENT 103 Y12-10a17.p1k chr14 1021 800 519273 519497 C 222 84.68 1326 reject_low 56 ALIGNMENT 968 Y12-10a17.q1k chr04 1073 37 881349 882387 C 1037 98.55 1379 reject_low 11 ALIGNMENT 971 Y12-10a17.q1k chr13 1073 37 360053 361091 C 1037 98.65 1379 reject_low 2 ALIGNMENT 0 Y12-10a17.p1k chr13 62 799 362586 362585 F 738 0.00 1326 reject_low 38 ALIGNMENT 177 Y12-10a17.p1k chr15 1076 820 600458 600714 C 257 92.22 1326 reject_low 47 ALIGNMENT 962 Y12-10a17.q1k chr10 37 1073 479793 480831 F 1037 98.36 1379 reject_low 21 ALIGNMENT 0 Y12-10a17.p1k chr08 62 819 543630 543629 F 758 0.00 1326 reject_low 49 ALIGNMENT 962 Y12-10a17.q1k chr14 37 1073 520992 522030 F 1037 98.36 1379 reject_low 8 ALIGNMENT 174 Y12-10a17.p1k chr13 1076 820 189807 190063 C 257 91.83 1326 reject_low 51 ALIGNMENT 961 Y12-10a17.q1k chr10 37 1076 474209 475250 F 1040 98.27 1379 reject_low 9 ALIGNMENT 0 Y12-10a17.p1k chr14 62 471 102191 102190 F 410 0.00 1326 reject_low 27 ALIGNMENT 0 Y12-10a17.p1k chr02 819 62 259888 259887 C 758 0.00 1326 reject_low 48 ALIGNMENT 174 Y12-10a17.p1k chr13 1076 820 184225 184481 C 257 91.83 1326 reject_low 50 ALIGNMENT 0 Y12-10a17.p1k chr13 492 62 184482 184481 C 431 0.00 1326 reject_low 34 ALIGNMENT 968 Y12-10a17.q1k chr15 37 1073 119534 120572 F 1037 98.55 1379 reject_low 15 ALIGNMENT 283 Y12-10a17.p1k chr15 799 493 600408 600714 C 307 99.67 1326 reject_low 7 ALIGNMENT 186 Y12-10a17.p1k chr16 1076 800 560533 560809 C 277 91.34 1326 reject_low 42 ALIGNMENT 0 Y12-10a17.p1k chr07 800 819 817725 822999 F 20 0.00 1326 reject_low 52 ALIGNMENT 0 Y12-10a17.p1k chr13 62 471 362585 362584 F 410 0.00 1326 reject_low 3 ALIGNMENT 58 Y12-10a17.p1k chr07 934 823 817278 817387 C 112 86.61 1326 reject_low 60 ALIGNMENT 962 Y12-10a17.q1k chr13 1073 37 375751 376789 C 1037 98.36 1379 reject_low 3 ALIGNMENT 0 Y12-10a17.p1k chr15 852 800 600409 600408 C 53 0.00 1326 reject_low 7 ALIGNMENT 0 Y12-10a17.p1k chr16 472 62 560810 560809 C 411 0.00 1326 reject_low 29 ALIGNMENT 0 Y12-10a17.p1k chr14 852 800 524736 524735 C 53 0.00 1326 reject_low 8 ALIGNMENT 0 Y12-10a17.p1k chr14 852 800 519170 519169 C 53 0.00 1326 reject_low 55 ALIGNMENT 0 Y12-10a17.p1k chr02 472 62 226956 226955 C 411 0.00 1326 reject_low 1 ALIGNMENT 0 Y12-10a17.p1k chr16 799 62 560810 560809 C 738 0.00 1326 reject_low 42 ALIGNMENT 296 Y12-10a17.p1k chr02 799 472 221045 221374 C 328 98.78 1326 reject_low 28 ALIGNMENT 0 Y12-10a17.p1k chr15 819 62 595133 595132 C 758 0.00 1326 reject_low 46 ALIGNMENT 965 Y12-10a17.q1k chr08 1073 37 546659 547697 C 1037 98.46 1379 reject_low 5 ALIGNMENT 0 Y12-10a17.p1k chr02 492 62 259888 259887 C 431 0.00 1326 reject_low 33 ALIGNMENT 0 Y12-10a17.p1k chr14 852 800 102555 102554 C 53 0.00 1326 reject_low 62 ALIGNMENT 71 Y12-10a17.p1k chr15 674 557 594642 594759 C 118 89.83 1326 reject_low 59 ALIGNMENT 0 Y12-10a17.p1k chr07 62 819 817418 817417 F 758 0.00 1326 reject_low 45 ALIGNMENT 0 Y12-10a17.p1k chr11 62 472 517095 517094 F 411 0.00 1326 reject_low 25 ALIGNMENT 958 Y12-10a17.q1k chr16 37 1073 846240 847281 F 1037 98.26 1379 reject_low 23 ALIGNMENT 962 Y12-10a17.q1k chr15 37 1073 596647 597685 F 1037 98.36 1379 reject_low 7 ALIGNMENT 0 Y12-10a17.p1k chr14 774 62 102579 102578 C 713 0.00 1326 reject_low 62 ALIGNMENT 0 Y12-10a17.p1k chr13 852 800 184176 184175 C 53 0.00 1326 reject_low 34 ALIGNMENT 300 Y12-10a17.p1k chr14 472 799 102191 102518 F 328 99.09 1326 reject_low 27 ALIGNMENT 299 Y12-10a17.p1k chr14 473 799 96610 96936 F 327 99.08 1326 reject_low 4 ALIGNMENT 0 Y12-10a17.p1k chr15 556 62 594760 594759 C 495 0.00 1326 reject_low 59 ALIGNMENT 309 Y12-10a17.p1k chr13 472 799 362585 362912 F 328 100.00 1326 reject_low 3 ALIGNMENT 0 Y12-10a17.p1k chr11 62 472 457783 457782 F 411 0.00 1326 reject_low 30 ALIGNMENT 308 Y12-10a17.p1k chr02 799 473 226629 226955 C 327 100.00 1326 reject_low 1 ALIGNMENT 177 Y12-10a17.p1k chr07 820 1076 817418 817674 F 257 92.22 1326 reject_low 45 ALIGNMENT 57 Y12-10a17.p1k chr07 607 496 817278 817387 C 112 86.61 1326 reject_low 61 ALIGNMENT 0 Y12-10a17.p1k chr14 62 799 102192 102191 F 738 0.00 1326 reject_low 41 ALIGNMENT 177 Y12-10a17.p1k chr15 1076 820 594876 595132 C 257 92.22 1326 reject_low 46 ALIGNMENT 0 Y12-10a17.p1k chr02 798 62 226957 226956 C 737 0.00 1326 reject_low 35 ALIGNMENT 147 Y12-10a17.p1k chr14 799 472 519169 519498 C 328 84.45 1326 reject_low 55 ALIGNMENT 205 Y12-10a17.p1k chr01 473 799 160239 160570 F 327 89.91 1326 reject_low 58 ALIGNMENT 206 Y12-10a17.p1k chr01 472 799 165826 166158 F 328 89.94 1326 reject_low 53 ALIGNMENT 199 Y12-10a17.p1k chr02 1076 799 226679 226956 C 278 92.81 1326 reject_low 35 ALIGNMENT 280 Y12-10a17.p1k chr13 799 493 184175 184481 C 307 99.35 1326 reject_low 34 ALIGNMENT 968 Y12-10a17.q1k chr05 1073 37 446447 447485 C 1037 98.55 1379 reject_low 12 ALIGNMENT 293 Y12-10a17.p1k chr16 799 473 560483 560809 C 327 98.47 1326 reject_low 29 ALIGNMENT 965 Y12-10a17.q1k chr04 1073 37 989770 990808 C 1037 98.46 1379 reject_low 18 ALIGNMENT 965 Y12-10a17.q1k chr13 37 1073 185996 187034 F 1037 98.46 1379 reject_low 6 ALIGNMENT 174 Y12-10a17.p1k chr08 820 1076 543630 543886 F 257 91.83 1326 reject_low 49 ALIGNMENT 0 Y12-10a17.p1k chr01 62 472 160239 160238 F 411 0.00 1326 reject_low 58 ALIGNMENT 198 Y12-10a17.p1k chr13 800 1076 362586 362862 F 277 92.78 1326 reject_low 38 ALIGNMENT 308 Y12-10a17.p1k chr13 473 799 357004 357330 F 327 100.00 1326 reject_low 2 ALIGNMENT 0 Y12-10a17.p1k chr13 819 62 184482 184481 C 758 0.00 1326 reject_low 50 ALIGNMENT 305 Y12-10a17.p1k chr07 799 473 535220 535546 C 327 99.69 1326 reject_low 26 ALIGNMENT 283 Y12-10a17.p1k chr07 493 799 817418 817724 F 307 99.67 1326 reject_low 52 ALIGNMENT 968 Y12-10a17.q1k chr05 1073 37 495546 496584 C 1037 98.55 1379 reject_low 13 ALIGNMENT 0 Y12-10a17.p1k chr01 800 799 160571 165826 F 0 0.00 1326 reject_low 58 ALIGNMENT 0 Y12-10a17.p1k chr08 800 852 543936 543935 F 53 0.00 1326 reject_low 5 ALIGNMENT 180 Y12-10a17.p1k chr11 800 1076 457783 458059 F 277 90.61 1326 reject_low 44 ALIGNMENT 0 Y12-10a17.p1k chr14 62 472 96610 96609 F 411 0.00 1326 reject_low 4 ALIGNMENT 965 Y12-10a17.q1k chr12 1073 37 218136 219174 C 1037 98.46 1379 reject_low 19 ALIGNMENT 0 Y12-10a17.p1k chr15 492 62 600715 600714 C 431 0.00 1326 reject_low 7 ALIGNMENT 0 Y12-10a17.p1k chr07 472 62 535547 535546 C 411 0.00 1326 reject_low 26 ALIGNMENT 0 Y12-10a17.p1k chr01 800 852 166158 166157 F 53 0.00 1326 reject_low 53 ALIGNMENT 0 Y12-10a17.p1k chr11 800 852 458109 458108 F 53 0.00 1326 reject_low 30 ALIGNMENT 0 Y12-10a17.p1k chr02 799 62 221374 221373 C 738 0.00 1326 reject_low 43 ALIGNMENT 0 Y12-10a17.p1k chr07 495 62 817388 817387 C 434 0.00 1326 reject_low 61 ALIGNMENT 968 Y12-10a17.q1k chr04 1073 37 648548 649586 C 1037 98.55 1379 reject_low 10 ALIGNMENT 0 Y12-10a17.p1k chr15 819 62 600715 600714 C 758 0.00 1326 reject_low 47 ALIGNMENT 0 Y12-10a17.p1k chr14 471 62 519499 519498 C 410 0.00 1326 reject_low 55 ALIGNMENT 0 Y12-10a17.p1k chr14 799 62 525064 525063 C 738 0.00 1326 reject_low 57 ALIGNMENT 23 Y12-10a17.p1k chr14 799 775 102554 102578 C 25 100.00 1326 reject_low 62 ALIGNMENT 0 Y12-10a17.p1k chr07 822 62 817388 817387 C 761 0.00 1326 reject_low 60 ALIGNMENT 968 Y12-10a17.q1k chr07 1073 37 564898 565936 C 1037 98.55 1379 reject_low 14 ALIGNMENT 0 Y12-10a17.p1k chr13 819 62 190064 190063 C 758 0.00 1326 reject_low 51 ALIGNMENT 0 Y12-10a17.p1k chr08 62 492 543630 543629 F 431 0.00 1326 reject_low 5 ALIGNMENT 0 Y12-10a17.p1k chr14 800 852 96936 96935 F 53 0.00 1326 reject_low 4 ALIGNMENT 198 Y12-10a17.p1k chr13 800 1076 357004 357280 F 277 92.78 1326 reject_low 37 ALIGNMENT 156 Y12-10a17.p1k chr01 800 1021 165827 166054 F 222 91.89 1326 reject_low 58 ALIGNMENT 946 Y12-10a17.q1k chr16 1076 37 853677 854718 C 1040 97.79 1379 reject_low 24 ALIGNMENT 0 Y12-10a17.p1k chr11 62 799 517095 517094 F 738 0.00 1326 reject_low 36 ALIGNMENT 280 Y12-10a17.p1k chr02 799 493 259581 259887 C 307 99.35 1326 reject_low 33 ALIGNMENT 0 Y12-10a17.p1k chr07 852 608 817279 817278 C 245 0.00 1326 reject_low 61 ALIGNMENT 0 Y12-10a17.p1k chr11 852 474 84107 84106 C 379 0.00 1326 accept 0 ALIGNMENT 0 Y12-10a17.p1k chr07 800 852 823306 823305 F 53 0.00 1326 reject_low 31 ALIGNMENT 0 Y12-10a17.p1k chr13 800 852 362912 362911 F 53 0.00 1326 reject_low 3 ALIGNMENT 0 Y12-10a17.p1k chr16 852 800 560484 560483 C 53 0.00 1326 reject_low 29 ALIGNMENT 0 Y12-10a17.p1k chr13 62 799 357004 357003 F 738 0.00 1326 reject_low 37 ALIGNMENT 103 Y12-10a17.p1k chr14 1021 800 524839 525063 C 222 84.68 1326 reject_low 57 ALIGNMENT 198 Y12-10a17.p1k chr11 800 1076 517095 517371 F 277 92.78 1326 reject_low 36 ALIGNMENT 0 Y12-10a17.p1k chr07 852 800 535221 535220 C 53 0.00 1326 reject_low 26 ALIGNMENT 0 Y12-10a17.p1k chr07 62 492 823000 822999 F 431 0.00 1326 reject_low 31 ALIGNMENT 0 Y12-10a17.p1k chr13 492 62 190064 190063 C 431 0.00 1326 reject_low 6 ALIGNMENT 192 Y12-10a17.p1k chr14 800 1076 96610 96886 F 277 92.06 1326 reject_low 40 ALIGNMENT 0 Y12-10a17.p1k chr11 800 852 517421 517420 F 53 0.00 1326 reject_low 25 ALIGNMENT 287 Y12-10a17.p1k chr11 473 799 457783 458109 F 327 97.86 1326 reject_low 30 ALIGNMENT 192 Y12-10a17.p1k chr14 800 1076 102192 102468 F 277 92.06 1326 reject_low 41 ALIGNMENT 0 Y12-10a17.p1k chr07 62 492 817418 817417 F 431 0.00 1326 reject_low 52 ALIGNMENT 0 Y12-10a17.p1k chr02 852 800 221046 221045 C 53 0.00 1326 reject_low 28 ALIGNMENT 0 Y12-10a17.p1k chr13 62 472 357004 357003 F 411 0.00 1326 reject_low 2 ALIGNMENT 283 Y12-10a17.p1k chr15 799 493 594826 595132 C 307 99.67 1326 reject_low 32 ALIGNMENT 280 Y12-10a17.p1k chr08 493 799 543630 543936 F 307 99.35 1326 reject_low 5 ALIGNMENT 0 Y12-10a17.p1k chr02 852 800 259582 259581 C 53 0.00 1326 reject_low 33 ALIGNMENT 0 Y12-10a17.p1k chr02 852 800 226630 226629 C 53 0.00 1326 reject_low 1 ALIGNMENT 280 Y12-10a17.p1k chr13 799 493 189757 190063 C 307 99.35 1326 reject_low 6 ALIGNMENT 968 Y12-10a17.q1k chr14 1073 37 99659 100697 C 1037 98.55 1379 reject_low 4 ALIGNMENT 389 Y12-10a17.p1k chr11 473 19 84106 84564 C 455 96.48 1326 accept 0 ALIGNMENT 0 Y12-10a17.p1k chr14 799 62 519498 519497 C 738 0.00 1326 reject_low 56 ALIGNMENT 0 Y12-10a17.p1k chr13 800 852 357330 357329 F 53 0.00 1326 reject_low 2 ALIGNMENT 185 Y12-10a17.p1k chr02 1076 800 221095 221373 C 277 91.34 1326 reject_low 43 ALIGNMENT 0 Y12-10a17.p1k chr01 62 796 160236 160235 F 735 0.00 1326 reject_low 54 ALIGNMENT 0 Y12-10a17.p1k chr14 800 852 102518 102517 F 53 0.00 1326 reject_low 27 ALIGNMENT 159 Y12-10a17.p1k chr01 797 1021 160236 160466 F 225 92.00 1326 reject_low 54 ALIGNMENT 965 Y12-10a17.q1k chr02 37 1073 261402 262440 F 1037 98.46 1379 reject_low 17 ALIGNMENT 146 Y12-10a17.p1k chr14 799 473 524735 525063 C 327 84.40 1326 reject_low 8 ALIGNMENT 965 Y12-10a17.q1k chr13 37 1073 198163 199201 F 1037 98.46 1379 reject_low 20 ALIGNMENT 308 Y12-10a17.p1k chr11 473 799 517095 517421 F 327 100.00 1326 reject_low 25 ALIGNMENT 0 Y12-10a17.p1k chr02 471 62 221375 221374 C 410 0.00 1326 reject_low 28 ALIGNMENT 195 Y12-10a17.p1k chr07 1076 800 535270 535546 C 277 92.42 1326 reject_low 39 ALIGNMENT 0 Y12-10a17.p1k chr14 62 799 96610 96609 F 738 0.00 1326 reject_low 40 ALIGNMENT 0 Y12-10a17.p1k chr01 62 471 165826 165825 F 410 0.00 1326 reject_low 53 ALIGNMENT 0 Y12-10a17.p1k chr15 852 800 594827 594826 C 53 0.00 1326 reject_low 32 ALIGNMENT 174 Y12-10a17.p1k chr02 1076 820 259631 259887 C 257 91.83 1326 reject_low 48 ALIGNMENT 0 Y12-10a17.p1k chr07 799 62 535547 535546 C 738 0.00 1326 reject_low 39 ALIGNMENT 283 Y12-10a17.p1k chr07 493 799 823000 823306 F 307 99.67 1326 reject_low 31 ALIGNMENT 974 Y12-10a17.q1k chr02 37 1073 222868 223906 F 1037 98.75 1379 reject_low 1 ALIGNMENT 0 Y12-10a17.p1k chr14 472 62 525064 525063 C 411 0.00 1326 reject_low 8 ALIGNMENT 0 Y12-10a17.p1k chr11 62 799 457783 457782 F 738 0.00 1326 reject_low 44 ALIGNMENT 0 Y12-10a17.p1k chr15 852 675 594643 594642 C 178 0.00 1326 reject_low 59 ALIGNMENT 945 Y12-10a18.p1k chr11 1113 20 61681 62794 C 1094 97.07 1314 accept 0 ALIGNMENT 893 Y12-10a18.q1k chr11 33 1079 57028 58082 F 1047 95.99 1361 accept 0 ALIGNMENT 998 Y12-10a19.p1k chr03 1156 18 9900 11055 C 1139 96.66 1293 ambiguous_tel 1 ALIGNMENT 950 Y12-10a19.q1k chr03 37 1145 6659 7776 F 1109 96.03 1308 ambiguous_tel 1 ALIGNMENT 955 Y12-10a19.q1k chr11 1163 37 661608 662747 C 1127 95.83 1308 ambiguous_tel 0 ALIGNMENT 995 Y12-10a19.p1k chr11 18 1156 658381 659536 F 1139 96.58 1293 ambiguous_tel 0 ALIGNMENT 898 Y12-10a21.p1k chr13 43 1165 370740 371869 F 1123 94.84 1252 accept_trans 0 ALIGNMENT 906 Y12-10a21.q1k chr13 1137 38 379766 380883 C 1100 95.82 1271 accept_trans 0 ALIGNMENT 1054 Y12-10a22.p1k chr15 1293 20 1048243 1049517 C 1274 95.21 1338 accept 0 ALIGNMENT 759 Y12-10a22.q1k chr15 33 944 1044774 1045670 F 912 96.27 1422 accept 0 ALIGNMENT 985 Y12-10a23.p1k chr16 29 1208 714279 715460 F 1180 95.76 1237 accept 0 ALIGNMENT 1009 Y12-10a23.q1k chr16 1264 38 717406 718636 C 1227 95.44 1264 accept 0 ALIGNMENT 996 Y12-10a24.p1k chr02 1211 19 77197 78394 C 1193 95.73 1243 accept 0 ALIGNMENT 576 Y12-10a24.q1k chr02 33 686 75636 76287 F 654 96.79 1414 accept 0 ALIGNMENT 0 Y12-10b02.p1k chr12 634 817 468930 468929 F 184 0.00 1374 reject_low 2 ALIGNMENT 0 Y12-10b02.p1k chr12 62 514 482044 482043 F 453 0.00 1374 reject_low 6 ALIGNMENT 0 Y12-10b02.p1k chr06 147 62 31730 31729 C 86 0.00 1374 reject_low 4 ALIGNMENT 888 Y12-10b02.p1k chr12 20 1208 459179 460393 F 1189 93.61 1374 accept 0 ALIGNMENT 0 Y12-10b02.p1k chr12 649 817 489481 489480 F 169 0.00 1374 reject_low 3 ALIGNMENT 0 Y12-10b02.p1k chr12 62 514 489348 489347 F 453 0.00 1374 reject_low 3 ALIGNMENT 1048 Y12-10b02.q1k chr12 1220 36 454056 455240 C 1185 96.79 1354 reject_low 1 ALIGNMENT 0 Y12-10b02.p1k chr12 62 514 472464 472463 F 453 0.00 1374 reject_low 5 ALIGNMENT 0 Y12-10b02.p1k chr06 817 256 31623 31622 C 562 0.00 1374 reject_low 4 ALIGNMENT 0 Y12-10b02.p1k chr12 634 817 472582 472581 F 184 0.00 1374 reject_low 5 ALIGNMENT 119 Y12-10b02.p1k chr12 515 633 482044 482162 F 119 100.00 1374 reject_low 6 ALIGNMENT 128 Y12-10b02.p1k chr12 515 648 489348 489481 F 134 98.51 1374 reject_low 3 ALIGNMENT 0 Y12-10b02.p1k chr12 634 817 485814 485813 F 184 0.00 1374 reject_low 7 ALIGNMENT 119 Y12-10b02.p1k chr12 515 633 472464 472582 F 119 100.00 1374 reject_low 5 ALIGNMENT 588 Y12-10b02.p1k chr12 20 633 468316 468930 F 614 99.67 1374 reject_low 2 ALIGNMENT 94 Y12-10b02.p1k chr06 255 148 31622 31729 C 108 98.15 1374 reject_low 4 ALIGNMENT 0 Y12-10b02.p1k chr12 634 817 482162 482161 F 184 0.00 1374 reject_low 6 ALIGNMENT 1053 Y12-10b02.q1k chr12 1257 36 463157 464377 C 1222 96.07 1354 accept 0 ALIGNMENT 0 Y12-10b02.p1k chr12 62 514 485696 485695 F 453 0.00 1374 reject_low 7 ALIGNMENT 119 Y12-10b02.p1k chr12 515 633 485696 485814 F 119 100.00 1374 reject_low 7 ALIGNMENT 399 Y12-10b03.p1k chr11 681 24 194940 195594 C 658 87.99 1391 accept 0 ALIGNMENT 649 Y12-10b03.q1k chr11 37 841 191613 192404 F 805 95.53 1424 accept 0 ALIGNMENT 557 Y12-10b05.q1k chr11 1181 477 290029 290743 C 705 94.04 1422 accept 0 ALIGNMENT 959 Y12-10b05.p1k chr11 31 1212 286788 287960 F 1182 95.60 1455 accept 0 ALIGNMENT 0 Y12-10b06.p1k chr12 62 457 489754 489753 F 396 0.00 1397 reject_low 2 ALIGNMENT 0 Y12-10b06.p1k chr12 62 109 451419 451418 F 48 0.00 1397 reject_low 1 ALIGNMENT 991 Y12-10b06.q1k chr12 1215 36 463840 465036 C 1180 95.76 1338 accept 0 ALIGNMENT 1038 Y12-10b06.p1k chr12 17 1215 460462 461687 F 1199 96.33 1397 accept 0 ALIGNMENT 659 Y12-10b06.p1k chr12 458 1215 489754 490518 F 758 96.31 1397 reject_low 2 ALIGNMENT 991 Y12-10b06.q1k chr12 1215 36 454703 455899 C 1180 95.76 1338 reject_low 1 ALIGNMENT 951 Y12-10b06.p1k chr12 110 1215 451419 452550 F 1106 96.11 1397 reject_low 1 ALIGNMENT 861 Y12-10b07.q1k chr07 37 1017 380996 381981 F 981 97.04 1358 accept 0 ALIGNMENT 621 Y12-10b07.p1k chr02 22 1055 660851 661892 F 1034 86.85 1366 reject_low 1 ALIGNMENT 942 Y12-10b07.p1k chr07 1055 22 385548 386589 C 1034 97.20 1366 accept 0 ALIGNMENT 792 Y12-10b08.p1k chr13 900 28 367532 368404 C 873 97.82 1478 accept_chi 0 ALIGNMENT 663 Y12-10b08.q1k chr03 753 39 52401 53119 C 715 98.04 1433 accept_chi 1 ALIGNMENT 1088 Y12-10b09.p1k chr13 26 1306 704239 705528 F 1281 96.02 1398 accept 0 ALIGNMENT 762 Y12-10b09.q1k chr13 996 34 707377 708334 C 963 94.91 1442 accept 0 ALIGNMENT 963 Y12-10b10.p1k chr12 1120 19 330310 331407 C 1102 96.64 1377 accept 0 ALIGNMENT 714 Y12-10b10.q1k chr12 33 843 326405 327215 F 811 97.41 1436 accept 0 ALIGNMENT 233 Y12-10b11.q1k chr04 803 79 1039064 1039783 C 725 78.48 1458 accept 0 ALIGNMENT 1007 Y12-10b11.p1k chr04 14 1229 1034360 1035590 F 1216 96.22 1367 accept 0 ALIGNMENT 1006 Y12-10b12.p1k chr16 1112 24 113079 114176 C 1089 97.89 1326 accept 0 ALIGNMENT 1017 Y12-10b12.q1k chr16 37 1240 109048 110261 F 1204 95.68 1370 accept 0 ALIGNMENT 20 Y12-10b13.q1k chr11 876 840 628973 629009 C 37 89.19 1359 reject_low 1 ALIGNMENT 1011 Y12-10b13.p1k chr09 1181 15 61553 62724 C 1167 96.92 1393 accept 0 ALIGNMENT 0 Y12-10b13.q1k chr11 958 877 628867 628972 C 82 0.00 1359 reject_low 1 ALIGNMENT 20 Y12-10b13.q1k chr11 981 959 628844 628866 C 23 100.00 1359 reject_low 1 ALIGNMENT 0 Y12-10b13.q1k chr11 839 62 629010 629009 C 778 0.00 1359 reject_low 1 ALIGNMENT 956 Y12-10b13.q1k chr09 35 1148 57587 58714 F 1114 96.59 1359 accept 0 ALIGNMENT 1022 Y12-10b14.p1k chr12 1219 18 398695 399910 C 1202 95.84 1419 accept_chi 0 ALIGNMENT 990 Y12-10b14.q1k chr12 1255 35 390649 391866 C 1221 94.84 1367 accept_chi 1 ALIGNMENT 746 Y12-10b15.q1k chr15 869 34 734761 735595 C 836 98.21 1424 accept 0 ALIGNMENT 985 Y12-10b15.p1k chr15 19 1258 729714 730955 F 1240 94.60 1397 accept 0 ALIGNMENT 0 Y12-10b16.p1k chr15 1130 1133 216931 216965 F 4 0.00 1411 reject_bad_break 0 ALIGNMENT 841 Y12-10b16.p1k chr15 21 1129 215852 216930 F 1109 93.78 1411 reject_bad_break 0 ALIGNMENT 946 Y12-10b16.q1k chr15 1149 35 220748 221851 C 1115 96.23 1376 reject_bad_break 0 ALIGNMENT 35 Y12-10b16.p1k chr15 1134 1268 216966 217101 F 135 78.52 1411 reject_bad_break 0 ALIGNMENT 1006 Y12-10b17.p1k chr07 22 1140 57250 58388 F 1119 97.41 1333 accept 0 ALIGNMENT 943 Y12-10b17.q1k chr07 1222 35 61420 62610 C 1188 94.70 1362 accept 0 ALIGNMENT 992 Y12-10b20.p1k chr09 26 1177 74189 75348 F 1152 96.44 1324 accept 0 ALIGNMENT 881 Y12-10b20.q1k chr09 1070 38 77379 78409 C 1033 96.42 1299 accept 0 ALIGNMENT 905 Y12-10b21.q1k chr16 35 1153 36657 37797 F 1119 95.17 1255 accept 0 ALIGNMENT 1050 Y12-10b21.p1k chr16 1249 25 40424 41648 C 1225 95.84 1319 accept 0 ALIGNMENT 1026 Y12-10b22.q1k chr08 37 1270 343032 344268 F 1234 95.30 1282 accept 0 ALIGNMENT 1058 Y12-10b22.p1k chr08 1248 19 346433 347671 C 1230 96.59 1305 accept 0 ALIGNMENT 928 Y12-10b23.q1k chr14 29 1119 533508 534592 F 1091 96.79 1265 accept 0 ALIGNMENT 971 Y12-10b23.p1k chr14 1163 18 536907 538072 C 1146 95.72 1238 accept 0 ALIGNMENT 851 Y12-10b24.q1k chr11 36 1052 469860 470876 F 1017 96.17 1227 accept 0 ALIGNMENT 964 Y12-10b24.p1k chr11 1127 27 474050 475166 C 1101 96.55 1245 accept 0 ALIGNMENT 981 Y12-10c01.p1k chr14 1202 18 81852 83056 C 1185 96.20 1348 accept 0 ALIGNMENT 795 Y12-10c01.q1k chr14 260 1231 77674 78647 F 972 95.47 1406 accept 0 ALIGNMENT 560 Y12-10c02.q1k chr11 1071 441 202979 203618 C 631 97.15 1331 accept 0 ALIGNMENT 721 Y12-10c02.p1k chr11 362 1275 200409 201323 F 914 93.65 1512 accept 0 ALIGNMENT 800 Y12-10c04.q1k chr07 31 943 1007418 1008337 F 913 97.15 1356 accept 0 ALIGNMENT 823 Y12-10c04.p1k chr07 927 15 1012253 1013167 C 913 97.37 1405 accept 0 ALIGNMENT 0 Y12-10c05.q1k chr02 569 62 429096 429095 C 508 0.00 1393 reject_low 5 ALIGNMENT 71 Y12-10c05.q1k chr08 49 184 551602 551736 F 136 88.24 1393 accept_tel 0 ALIGNMENT 647 Y12-10c05.p1k chr12 1035 21 1003049 1004061 C 1015 88.67 1358 reject_low 2 ALIGNMENT 405 Y12-10c05.q1k chr01 222 983 225083 225869 F 762 85.70 1393 reject_low 1 ALIGNMENT 0 Y12-10c05.q1k chr08 185 229 551737 551738 F 45 0.00 1393 accept_tel 0 ALIGNMENT 0 Y12-10c05.q1k chr01 188 221 225094 225082 F 34 0.00 1393 reject_low 1 ALIGNMENT 965 Y12-10c05.p1k chr08 1172 21 554748 555904 C 1152 95.66 1358 accept_tel 0 ALIGNMENT 166 Y12-10c05.q1k chr02 948 527 430565 430986 C 422 81.04 1393 reject_low 4 ALIGNMENT 0 Y12-10c05.p1k chr13 816 898 163052 163051 F 83 0.00 1358 reject_low 3 ALIGNMENT 876 Y12-10c05.p1k chr01 1172 21 228085 229245 C 1152 93.14 1358 reject_low 1 ALIGNMENT 69 Y12-10c05.q1k chr01 49 187 224956 225093 F 139 87.77 1393 reject_low 1 ALIGNMENT 0 Y12-10c05.q1k chr02 526 62 430987 430986 C 465 0.00 1393 reject_low 4 ALIGNMENT 402 Y12-10c05.q1k chr08 230 983 551739 552517 F 754 85.68 1393 accept_tel 0 ALIGNMENT 449 Y12-10c05.p1k chr13 21 815 162257 163052 F 795 85.91 1358 reject_low 3 ALIGNMENT 133 Y12-10c05.q1k chr02 948 570 428715 429095 C 379 78.89 1393 reject_low 5 ALIGNMENT 953 Y12-10c07.q1k chr12 33 1106 453229 454314 F 1074 96.83 1388 accept 0 ALIGNMENT 1059 Y12-10c07.p1k chr12 1188 24 456469 457649 C 1165 97.68 1364 accept 0 ALIGNMENT 953 Y12-10c07.q1k chr12 33 1106 462366 463451 F 1074 96.83 1388 accept 1 ALIGNMENT 1059 Y12-10c07.p1k chr12 1188 24 465606 466786 C 1165 97.68 1364 accept 1 ALIGNMENT 70 Y12-10c08.p1k chr03 197 552 208128 208474 F 356 75.84 1430 reject_bad_break 0 ALIGNMENT 22 Y12-10c08.p1k chr03 32 90 207962 208018 F 59 83.05 1430 reject_bad_break 0 ALIGNMENT 0 Y12-10c08.p1k chr03 91 196 208019 208127 F 106 0.00 1430 reject_bad_break 0 ALIGNMENT 877 Y12-10c09.p1k chr16 16 1061 923380 924424 F 1046 95.98 1476 accept 0 ALIGNMENT 635 Y12-10c09.q1k chr16 880 32 926865 927730 C 849 93.52 1575 accept 0 ALIGNMENT 1028 Y12-10c10.p1k chr04 1240 18 456770 458006 C 1223 95.67 1404 accept 0 ALIGNMENT 906 Y12-10c10.q1k chr04 28 1114 452411 453510 F 1087 95.95 1402 accept 0 ALIGNMENT 813 Y12-10c11.q1k chr09 927 30 30812 31703 C 898 98.22 1484 accept 0 ALIGNMENT 1006 Y12-10c11.p1k chr09 18 1176 28594 29757 F 1159 96.72 1401 accept 0 ALIGNMENT 0 Y12-10c12.p1k chr14 896 825 710096 710095 C 72 0.00 1354 reject_low 1 ALIGNMENT 1020 Y12-10c12.q1k chr03 33 1213 271546 272731 F 1181 96.44 1407 accept 0 ALIGNMENT 0 Y12-10c12.p1k chr14 475 62 710444 710443 C 414 0.00 1354 reject_low 1 ALIGNMENT 126 Y12-10c12.p1k chr14 824 476 710095 710443 C 349 79.66 1354 reject_low 1 ALIGNMENT 862 Y12-10c12.p1k chr03 986 25 275279 276252 C 962 97.71 1354 accept 0 ALIGNMENT 780 Y12-10c13.q1k chr13 33 971 147776 148708 F 939 96.06 1381 accept_chi 1 ALIGNMENT 833 Y12-10c13.p1k chr09 73 1159 141469 142565 F 1087 94.20 1333 accept_chi 0 ALIGNMENT 1040 Y12-10c14.p1k chr15 20 1177 833090 834262 F 1158 97.24 1395 accept 0 ALIGNMENT 930 Y12-10c14.q1k chr15 1117 34 837987 839077 C 1084 96.77 1366 accept 0 ALIGNMENT 851 Y12-10c15.p1k chr15 1031 14 59807 60843 C 1018 96.27 1320 accept 0 ALIGNMENT 796 Y12-10c15.q1k chr15 35 949 56472 57384 F 915 97.16 1362 accept 0 ALIGNMENT 976 Y12-10c17.q1k chr15 38 1139 753475 754577 F 1102 96.73 1358 accept 0 ALIGNMENT 1031 Y12-10c17.p1k chr15 1215 24 758506 759705 C 1192 96.31 1333 accept 0 ALIGNMENT 869 Y12-10c18.q1k chr07 1161 37 1089744 1090860 C 1125 93.96 1401 reject_low 7 ALIGNMENT 52 Y12-10c18.p1k chr08 735 680 3564 3619 C 56 98.21 1337 reject_low 13 ALIGNMENT 29 Y12-10c18.p1k chr12 658 626 3878 3910 C 33 96.97 1337 reject_low 17 ALIGNMENT 29 Y12-10c18.p1k chr02 658 626 4079 4111 C 33 96.97 1337 reject_low 12 ALIGNMENT 1038 Y12-10c18.p1k chr04 29 1162 1527276 1528420 F 1134 97.62 1337 reject_low 5 ALIGNMENT 0 Y12-10c18.p1k chr16 514 575 944225 944240 F 62 0.00 1337 reject_low 11 ALIGNMENT 865 Y12-10c18.q1k chr12 37 1161 5857 6976 F 1125 93.87 1401 reject_low 14 ALIGNMENT 1023 Y12-10c18.p1k chr16 1162 29 3551 4695 C 1134 97.18 1337 reject_low 8 ALIGNMENT 29 Y12-10c18.p1k chr12 658 626 9413 9445 C 33 96.97 1337 reject_low 14 ALIGNMENT 1038 Y12-10c18.p1k chr15 29 1162 1086441 1087585 F 1134 97.62 1337 reject_low 3 ALIGNMENT 1061 Y12-10c18.p1k chr09 1162 29 4030 5175 C 1134 98.32 1337 accept_tel 0 ALIGNMENT 0 Y12-10c18.p1k chr08 868 736 3565 3564 C 133 0.00 1337 reject_low 13 ALIGNMENT 52 Y12-10c18.p1k chr12 735 680 9367 9422 C 56 98.21 1337 reject_low 14 ALIGNMENT 0 Y12-10c18.p1k chr02 456 62 4211 4210 C 395 0.00 1337 reject_low 12 ALIGNMENT 24 Y12-10c18.p1k chr02 605 576 4108 4137 C 30 93.33 1337 reject_low 12 ALIGNMENT 0 Y12-10c18.p1k chr02 575 514 4138 4153 C 62 0.00 1337 reject_low 12 ALIGNMENT 0 Y12-10c18.p1k chr06 456 62 3047 3046 C 395 0.00 1337 reject_low 18 ALIGNMENT 24 Y12-10c18.p1k chr08 605 576 3639 3668 C 30 93.33 1337 reject_low 13 ALIGNMENT 202 Y12-10c18.p1k chr12 29 233 1066893 1067097 F 205 100.00 1337 reject_low 9 ALIGNMENT 0 Y12-10c18.p1k chr08 679 659 3620 3609 C 21 0.00 1337 reject_low 13 ALIGNMENT 0 Y12-10c18.p1k chr06 625 606 2948 2943 C 20 0.00 1337 reject_low 18 ALIGNMENT 0 Y12-10c18.p1k chr12 575 514 3937 3952 C 62 0.00 1337 reject_low 17 ALIGNMENT 53 Y12-10c18.p1k chr13 513 457 3829 3885 C 57 98.25 1337 reject_low 16 ALIGNMENT 53 Y12-10c18.p1k chr12 513 457 3953 4009 C 57 98.25 1337 reject_low 17 ALIGNMENT 0 Y12-10c18.p1k chr12 575 514 9472 9487 C 62 0.00 1337 reject_low 14 ALIGNMENT 862 Y12-10c18.q1k chr15 1161 37 1090003 1091122 C 1125 93.78 1401 reject_low 3 ALIGNMENT 24 Y12-10c18.p1k chr12 605 576 9442 9471 C 30 93.33 1337 reject_low 14 ALIGNMENT 49 Y12-10c18.p1k chr13 735 680 3708 3763 C 56 96.43 1337 reject_low 16 ALIGNMENT 0 Y12-10c18.p1k chr12 625 606 9446 9441 C 20 0.00 1337 reject_low 14 ALIGNMENT 862 Y12-10c18.q1k chr12 1161 37 1070376 1071495 C 1125 93.78 1401 reject_low 9 ALIGNMENT 0 Y12-10c18.p1k chr08 736 868 558798 558797 F 133 0.00 1337 reject_low 15 ALIGNMENT 53 Y12-10c18.p1k chr12 513 457 9488 9544 C 57 98.25 1337 reject_low 14 ALIGNMENT 29 Y12-10c18.p1k chr16 626 658 944267 944299 F 33 96.97 1337 reject_low 11 ALIGNMENT 0 Y12-10c18.p1k chr02 625 606 4112 4107 C 20 0.00 1337 reject_low 12 ALIGNMENT 24 Y12-10c18.p1k chr08 576 605 558694 558723 F 30 93.33 1337 reject_low 15 ALIGNMENT 0 Y12-10c18.q1k chr04 87 62 1531909 1531908 C 26 0.00 1401 reject_low 5 ALIGNMENT 29 Y12-10c18.p1k chr08 626 658 558720 558752 F 33 96.97 1337 reject_low 15 ALIGNMENT 24 Y12-10c18.p1k chr13 605 576 3783 3812 C 30 93.33 1337 reject_low 16 ALIGNMENT 868 Y12-10c18.q1k chr08 37 1161 182 1301 F 1125 93.96 1401 reject_low 13 ALIGNMENT 0 Y12-10c18.p1k chr05 289 234 4590 4585 C 56 0.00 1337 reject_low 10 ALIGNMENT 1061 Y12-10c18.p1k chr10 1162 29 4013 5158 C 1134 98.32 1337 reject_low 1 ALIGNMENT 0 Y12-10c18.p1k chr02 679 659 4089 4078 C 21 0.00 1337 reject_low 12 ALIGNMENT 869 Y12-10c18.q1k chr16 1161 37 946844 947960 C 1125 93.96 1401 reject_low 11 ALIGNMENT 870 Y12-10c18.q1k chr02 37 1202 17 1176 F 1166 93.22 1401 reject_low 12 ALIGNMENT 0 Y12-10c18.p1k chr12 234 289 1067098 1067093 F 56 0.00 1337 reject_low 9 ALIGNMENT 0 Y12-10c18.p1k chr13 679 659 3764 3753 C 21 0.00 1337 reject_low 16 ALIGNMENT 53 Y12-10c18.p1k chr08 457 513 558621 558677 F 57 98.25 1337 reject_low 15 ALIGNMENT 0 Y12-10c18.p1k chr16 606 625 944271 944266 F 20 0.00 1337 reject_low 11 ALIGNMENT 52 Y12-10c18.p1k chr02 735 680 4033 4088 C 56 98.21 1337 reject_low 12 ALIGNMENT 202 Y12-10c18.p1k chr05 233 29 4586 4790 C 205 100.00 1337 reject_low 10 ALIGNMENT 924 Y12-10c18.q1k chr09 37 1202 222 1376 F 1166 94.60 1401 accept_tel 0 ALIGNMENT 24 Y12-10c18.p1k chr12 605 576 3907 3936 C 30 93.33 1337 reject_low 17 ALIGNMENT 752 Y12-10c18.p1k chr12 340 1162 1067125 1067958 F 823 97.57 1337 reject_low 9 ALIGNMENT 839 Y12-10c18.q1k chr04 1161 88 1530838 1531908 C 1074 94.23 1401 reject_low 5 ALIGNMENT 0 Y12-10c18.p1k chr06 575 514 2974 2989 C 62 0.00 1337 reject_low 18 ALIGNMENT 29 Y12-10c18.p1k chr08 658 626 3610 3642 C 33 96.97 1337 reject_low 13 ALIGNMENT 1038 Y12-10c18.p1k chr12 29 1162 1073477 1074621 F 1134 97.62 1337 reject_low 2 ALIGNMENT 1023 Y12-10c18.p1k chr05 29 1162 572105 573249 F 1134 97.18 1337 reject_low 6 ALIGNMENT 0 Y12-10c18.p1k chr08 659 679 558753 558742 F 21 0.00 1337 reject_low 15 ALIGNMENT 0 Y12-10c18.q1k chr06 62 609 2 1 F 548 0.00 1401 reject_low 18 ALIGNMENT 52 Y12-10c18.p1k chr12 735 680 3832 3887 C 56 98.21 1337 reject_low 17 ALIGNMENT 0 Y12-10c18.p1k chr12 868 736 9368 9367 C 133 0.00 1337 reject_low 14 ALIGNMENT 869 Y12-10c18.q1k chr16 37 1161 17 1133 F 1125 93.96 1401 reject_low 8 ALIGNMENT 0 Y12-10c18.p1k chr12 868 736 3833 3832 C 133 0.00 1337 reject_low 17 ALIGNMENT 855 Y12-10c18.q1k chr13 37 1111 198 1270 F 1075 94.60 1401 reject_low 16 ALIGNMENT 0 Y12-10c18.p1k chr08 606 625 558724 558719 F 20 0.00 1337 reject_low 15 ALIGNMENT 29 Y12-10c18.p1k chr12 290 324 1067094 1067128 F 35 94.29 1337 reject_low 9 ALIGNMENT 24 Y12-10c18.p1k chr16 576 605 944241 944270 F 30 93.33 1337 reject_low 11 ALIGNMENT 53 Y12-10c18.p1k chr02 513 457 4154 4210 C 57 98.25 1337 reject_low 12 ALIGNMENT 53 Y12-10c18.p1k chr06 513 457 2990 3046 C 57 98.25 1337 reject_low 18 ALIGNMENT 52 Y12-10c18.p1k chr16 680 735 944290 944345 F 56 98.21 1337 reject_low 11 ALIGNMENT 862 Y12-10c18.q1k chr12 1161 37 1077039 1078158 C 1125 93.78 1401 reject_low 2 ALIGNMENT 869 Y12-10c18.q1k chr05 1161 37 575667 576783 C 1125 93.96 1401 reject_low 6 ALIGNMENT 0 Y12-10c18.p1k chr08 625 606 3643 3638 C 20 0.00 1337 reject_low 13 ALIGNMENT 0 Y12-10c18.p1k chr02 868 736 4034 4033 C 133 0.00 1337 reject_low 12 ALIGNMENT 0 Y12-10c18.p1k chr12 456 62 9545 9544 C 395 0.00 1337 reject_low 14 ALIGNMENT 876 Y12-10c18.q1k chr05 38 1161 2 1120 F 1124 94.22 1401 reject_low 10 ALIGNMENT 0 Y12-10c18.p1k chr12 625 606 3911 3906 C 20 0.00 1337 reject_low 17 ALIGNMENT 0 Y12-10c18.p1k chr16 62 456 944168 944167 F 395 0.00 1337 reject_low 11 ALIGNMENT 0 Y12-10c18.p1k chr13 456 62 3886 3885 C 395 0.00 1337 reject_low 16 ALIGNMENT 0 Y12-10c18.p1k chr12 325 339 1067129 1067124 F 15 0.00 1337 reject_low 9 ALIGNMENT 0 Y12-10c18.p1k chr08 575 514 3669 3684 C 62 0.00 1337 reject_low 13 ALIGNMENT 0 Y12-10c18.p1k chr13 868 736 3709 3708 C 133 0.00 1337 reject_low 16 ALIGNMENT 52 Y12-10c18.p1k chr06 735 680 2869 2924 C 56 98.21 1337 reject_low 18 ALIGNMENT 0 Y12-10c18.p1k chr13 575 514 3813 3828 C 62 0.00 1337 reject_low 16 ALIGNMENT 29 Y12-10c18.p1k chr13 658 626 3754 3786 C 33 96.97 1337 reject_low 16 ALIGNMENT 835 Y12-10c18.q1k chr12 37 1161 220 1333 F 1125 93.24 1401 reject_low 17 ALIGNMENT 0 Y12-10c18.p1k chr06 868 736 2870 2869 C 133 0.00 1337 reject_low 18 ALIGNMENT 0 Y12-10c18.p1k chr08 514 575 558678 558693 F 62 0.00 1337 reject_low 15 ALIGNMENT 52 Y12-10c18.p1k chr08 680 735 558743 558798 F 56 98.21 1337 reject_low 15 ALIGNMENT 0 Y12-10c18.p1k chr08 62 456 558621 558620 F 395 0.00 1337 reject_low 15 ALIGNMENT 0 Y12-10c18.p1k chr05 339 325 4559 4554 C 15 0.00 1337 reject_low 10 ALIGNMENT 0 Y12-10c18.p1k chr12 456 62 4010 4009 C 395 0.00 1337 reject_low 17 ALIGNMENT 1023 Y12-10c18.p1k chr14 1162 29 3642 4786 C 1134 97.18 1337 reject_low 4 ALIGNMENT 1023 Y12-10c18.p1k chr07 29 1162 1086182 1087326 F 1134 97.18 1337 reject_low 7 ALIGNMENT 404 Y12-10c18.q1k chr06 610 1161 2 543 F 552 92.93 1401 reject_low 18 ALIGNMENT 875 Y12-10c18.q1k chr14 37 1161 108 1224 F 1125 94.13 1401 reject_low 4 ALIGNMENT 923 Y12-10c18.q1k chr10 37 1170 205 1327 F 1134 95.24 1401 reject_low 1 ALIGNMENT 0 Y12-10c18.p1k chr12 679 659 3888 3877 C 21 0.00 1337 reject_low 17 ALIGNMENT 0 Y12-10c18.p1k chr16 736 868 944345 944344 F 133 0.00 1337 reject_low 11 ALIGNMENT 53 Y12-10c18.p1k chr16 457 513 944168 944224 F 57 98.25 1337 reject_low 11 ALIGNMENT 24 Y12-10c18.p1k chr06 605 576 2944 2973 C 30 93.33 1337 reject_low 18 ALIGNMENT 862 Y12-10c18.q1k chr08 1161 37 561191 562310 C 1125 93.78 1401 reject_low 15 ALIGNMENT 0 Y12-10c18.p1k chr16 659 679 944300 944289 F 21 0.00 1337 reject_low 11 ALIGNMENT 0 Y12-10c18.p1k chr06 679 659 2925 2914 C 21 0.00 1337 reject_low 18 ALIGNMENT 0 Y12-10c18.p1k chr08 456 62 3742 3741 C 395 0.00 1337 reject_low 13 ALIGNMENT 0 Y12-10c18.p1k chr13 625 606 3787 3782 C 20 0.00 1337 reject_low 16 ALIGNMENT 29 Y12-10c18.p1k chr06 658 626 2915 2947 C 33 96.97 1337 reject_low 18 ALIGNMENT 53 Y12-10c18.p1k chr08 513 457 3685 3741 C 57 98.25 1337 reject_low 13 ALIGNMENT 0 Y12-10c18.p1k chr12 679 659 9423 9412 C 21 0.00 1337 reject_low 14 ALIGNMENT 29 Y12-10c18.p1k chr05 324 290 4555 4589 C 35 94.29 1337 reject_low 10 ALIGNMENT 700 Y12-10c18.p1k chr05 1162 340 3706 4558 C 823 95.50 1337 reject_low 10 ALIGNMENT 961 Y12-10c19.p1k chr07 22 1150 124466 125599 F 1129 95.84 1339 accept 0 ALIGNMENT 835 Y12-10c20.q1k chr12 35 1084 1026337 1027386 F 1050 95.14 1351 accept 0 ALIGNMENT 1020 Y12-10c20.p1k chr12 1212 20 1029995 1031196 C 1193 96.06 1352 accept 0 ALIGNMENT 1003 Y12-10c21.q1k chr15 38 1150 177370 178484 F 1113 97.84 1315 accept 0 ALIGNMENT 0 Y12-10c21.p1k chr15 62 281 427898 427897 F 220 0.00 1252 reject_low 1 ALIGNMENT 0 Y12-10c21.p1k chr08 317 829 365390 365389 F 513 0.00 1252 reject_low 2 ALIGNMENT 1050 Y12-10c21.p1k chr15 1242 21 181482 182709 C 1222 96.81 1252 accept 0 ALIGNMENT 0 Y12-10c21.p1k chr15 317 829 427932 427931 F 513 0.00 1252 reject_low 1 ALIGNMENT 22 Y12-10c21.p1k chr08 294 316 365368 365390 F 23 100.00 1252 reject_low 2 ALIGNMENT 0 Y12-10c21.p1k chr08 62 293 365368 365367 F 232 0.00 1252 reject_low 2 ALIGNMENT 20 Y12-10c21.p1k chr15 282 316 427898 427932 F 35 88.57 1252 reject_low 1 ALIGNMENT 953 Y12-10c22.q1k chr12 1176 39 878876 880020 C 1138 95.78 1299 accept 0 ALIGNMENT 103 Y12-10c22.p1k chr07 139 34 700952 701057 C 106 99.06 1289 reject_low 6 ALIGNMENT 0 Y12-10c22.p1k chr11 149 873 578716 578715 F 725 0.00 1289 reject_low 2 ALIGNMENT 0 Y12-10c22.p1k chr15 147 873 438751 438750 F 727 0.00 1289 reject_low 5 ALIGNMENT 0 Y12-10c22.p1k chr04 157 873 359693 359692 F 717 0.00 1289 reject_low 1 ALIGNMENT 108 Y12-10c22.p1k chr07 25 139 115477 115592 F 115 98.26 1289 reject_low 4 ALIGNMENT 115 Y12-10c22.p1k chr11 29 148 578596 578716 F 120 99.17 1289 reject_low 2 ALIGNMENT 115 Y12-10c22.p1k chr16 148 29 769191 769311 C 120 99.17 1289 reject_low 3 ALIGNMENT 110 Y12-10c22.p1k chr15 29 146 438633 438751 F 118 98.31 1289 reject_low 5 ALIGNMENT 0 Y12-10c22.p1k chr07 140 873 115592 115591 F 734 0.00 1289 reject_low 4 ALIGNMENT 1065 Y12-10c22.p1k chr12 17 1286 875350 876636 F 1270 95.43 1289 accept 0 ALIGNMENT 0 Y12-10c22.p1k chr16 873 149 769192 769191 C 725 0.00 1289 reject_low 3 ALIGNMENT 0 Y12-10c22.p1k chr07 873 140 700953 700952 C 734 0.00 1289 reject_low 6 ALIGNMENT 112 Y12-10c22.p1k chr04 29 156 359566 359693 F 128 96.88 1289 reject_low 1 ALIGNMENT 889 Y12-10c24.p1k chr12 20 1081 459117 460199 F 1062 96.14 1271 reject_bad_break 0 ALIGNMENT 0 Y12-10c24.p1k chr06 858 319 31623 31622 C 540 0.00 1271 reject_low 6 ALIGNMENT 0 Y12-10c24.p1k chr12 62 577 485696 485695 F 516 0.00 1271 reject_low 8 ALIGNMENT 0 Y12-10c24.p1k chr12 62 1081 460217 460216 F 1020 0.00 1271 reject_low 9 ALIGNMENT 0 Y12-10c24.q1k chr12 465 62 485815 485814 C 404 0.00 1437 reject_low 5 ALIGNMENT 20 Y12-10c24.p1k chr12 1082 1107 460217 460242 F 26 96.15 1271 reject_low 9 ALIGNMENT 397 Y12-10c24.q1k chr12 577 72 459682 460202 C 506 93.87 1437 reject_bad_break 0 ALIGNMENT 0 Y12-10c24.p1k chr12 62 577 489348 489347 F 516 0.00 1271 reject_low 2 ALIGNMENT 119 Y12-10c24.p1k chr12 578 696 482044 482162 F 119 100.00 1271 reject_low 7 ALIGNMENT 128 Y12-10c24.p1k chr12 578 711 489348 489481 F 134 98.51 1271 reject_low 2 ALIGNMENT 78 Y12-10c24.q1k chr12 577 466 482051 482162 C 112 90.18 1437 reject_low 4 ALIGNMENT 88 Y12-10c24.q1k chr12 577 451 489355 489481 C 127 89.76 1437 reject_low 2 ALIGNMENT 0 Y12-10c24.q1k chr12 71 72 460203 460218 C 0 0.00 1437 reject_bad_break 0 ALIGNMENT 78 Y12-10c24.q1k chr12 577 466 472471 472582 C 112 90.18 1437 reject_low 3 ALIGNMENT 0 Y12-10c24.p1k chr12 697 858 472582 472581 F 162 0.00 1271 reject_low 3,4,5 ALIGNMENT 78 Y12-10c24.q1k chr12 577 466 485703 485814 C 112 90.18 1437 reject_low 5 ALIGNMENT 119 Y12-10c24.p1k chr12 578 696 485696 485814 F 119 100.00 1271 reject_low 8 ALIGNMENT 0 Y12-10c24.p1k chr12 62 577 472464 472463 F 516 0.00 1271 reject_low 3,4,5 ALIGNMENT 119 Y12-10c24.p1k chr12 578 696 472464 472582 F 119 100.00 1271 reject_low 3,4,5 ALIGNMENT 0 Y12-10c24.p1k chr12 697 858 482162 482161 F 162 0.00 1271 reject_low 7 ALIGNMENT 0 Y12-10c24.q1k chr12 465 62 468931 468930 C 404 0.00 1437 reject_low 1 ALIGNMENT 0 Y12-10c24.q1k chr12 450 62 489482 489481 C 389 0.00 1437 reject_low 2 ALIGNMENT 0 Y12-10c24.p1k chr12 697 858 485814 485813 F 162 0.00 1271 reject_low 8 ALIGNMENT 0 Y12-10c24.p1k chr06 210 62 31730 31729 C 149 0.00 1271 reject_low 6 ALIGNMENT 0 Y12-10c24.p1k chr12 697 858 468930 468929 F 162 0.00 1271 reject_low 1 ALIGNMENT 0 Y12-10c24.p1k chr12 62 577 482044 482043 F 516 0.00 1271 reject_low 7 ALIGNMENT 78 Y12-10c24.q1k chr12 577 466 468819 468930 C 112 90.18 1437 reject_low 1 ALIGNMENT 0 Y12-10c24.q1k chr12 465 62 472583 472582 C 404 0.00 1437 reject_low 3 ALIGNMENT 0 Y12-10c24.p1k chr12 712 858 489481 489480 F 147 0.00 1271 reject_low 2 ALIGNMENT 94 Y12-10c24.p1k chr06 318 211 31622 31729 C 108 98.15 1271 reject_low 6 ALIGNMENT 0 Y12-10c24.q1k chr12 465 62 482163 482162 C 404 0.00 1437 reject_low 4 ALIGNMENT 36 Y12-10c24.q1k chr12 71 33 460219 460257 C 39 100.00 1437 reject_bad_break 0 ALIGNMENT 652 Y12-10c24.p1k chr12 20 696 468254 468930 F 677 99.85 1271 reject_low 1 ALIGNMENT 852 Y12-10d01.q1k chr15 1093 33 788992 790039 C 1061 95.66 1431 accept 0 ALIGNMENT 936 Y12-10d01.p1k chr15 15 1196 785021 786220 F 1182 94.92 1420 accept 0 ALIGNMENT 960 Y12-10d02.p1k chr03 23 1212 20777 21965 F 1190 94.71 1415 accept 0 ALIGNMENT 48 Y12-10d05.p1k chr08 1028 751 116416 116694 C 278 76.26 1349 reject_low 11 ALIGNMENT 45 Y12-10d05.p1k chr13 1038 751 356994 357282 C 288 76.04 1349 reject_low 6 ALIGNMENT 0 Y12-10d05.p1k chr10 62 524 537831 537830 F 463 0.00 1349 reject_low 23,24 ALIGNMENT 24 Y12-10d05.p1k chr10 525 640 537831 537946 F 116 76.72 1349 reject_low 23,24 ALIGNMENT 0 Y12-10d05.p1k chr11 718 62 513484 513483 C 657 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-10d05.p1k chr15 750 62 980534 980533 C 689 0.00 1349 reject_low 15 ALIGNMENT 609 Y12-10d05.p1k chr13 1126 377 481111 481868 C 750 95.60 1349|0,1 reject_bad_break 0 ALIGNMENT 0 Y12-10d05.p1k chr13 750 62 357283 357282 C 689 0.00 1349 reject_low 6 ALIGNMENT 0 Y12-10d05.p1k chr07 62 750 541405 541404 F 689 0.00 1349 reject_low 8 ALIGNMENT 273 Y12-10d05.p1k chr13 377 86 481899 482190 C 292 98.97 1349 reject_bad_break 0 ALIGNMENT 48 Y12-10d05.p1k chr14 1028 751 96610 96888 C 278 76.62 1349 reject_low 12 ALIGNMENT 29 Y12-10d05.p1k chr10 679 605 538013 538087 C 75 82.67 1349 reject_low 22 ALIGNMENT 57 Y12-10d05.p1k chr07 751 1028 535817 536101 F 278 76.26 1349 reject_low 7 ALIGNMENT 0 Y12-10d05.p1k chr14 750 62 96889 96888 C 689 0.00 1349 reject_low 12 ALIGNMENT 57 Y12-10d05.p1k chr07 751 1028 541405 541689 F 278 76.26 1349 reject_low 8 ALIGNMENT 0 Y12-10d05.p1k chr13 62 718 196351 196350 F 657 0.00 1349 reject_low 4 ALIGNMENT 44 Y12-10d05.p1k chr15 1028 751 980255 980533 C 278 76.26 1349 reject_low 15 ALIGNMENT 826 Y12-10d05.q1k chr13 26 981 478381 479330 F 956 96.34 1374 reject_bad_break 0 ALIGNMENT 0 Y12-10d05.p1k chr13 85 62 482191 482190 C 24 0.00 1349 reject_bad_break 0 ALIGNMENT 75 Y12-10d05.p1k chr03 721 964 149502 149742 F 244 81.15 1349 reject_low 2 ALIGNMENT 48 Y12-10d05.p1k chr07 980 719 561895 562161 C 262 75.95 1349 reject_low 13 ALIGNMENT 0 Y12-10d05.p1k chr07 62 750 535268 535267 F 689 0.00 1349 reject_low 17 ALIGNMENT 0 Y12-10d05.p1k chr13 62 494 481364 481363 F 433 0.00 1349 reject_low 1 ALIGNMENT 53 Y12-10d05.p1k chr07 1028 719 567431 567745 C 310 74.84 1349 reject_low 9 ALIGNMENT 0 Y12-10d05.p1k chr03 62 720 149502 149501 F 659 0.00 1349 reject_low 2 ALIGNMENT 46 Y12-10d05.p1k chr04 1028 751 992303 992583 C 278 74.46 1349 reject_low 14 ALIGNMENT 0 Y12-10d05.p1k chr13 377 378 481868 481898 C 0 0.00 1349 reject_bad_break 0 ALIGNMENT 51 Y12-10d05.p1k chr12 719 980 656431 656697 F 262 76.34 1349 reject_low 10 ALIGNMENT 0 Y12-10d05.p1k chr03 62 750 169255 169254 F 689 0.00 1349 reject_low 18 ALIGNMENT 0 Y12-10d05.p1k chr07 62 750 535817 535816 F 689 0.00 1349 reject_low 7 ALIGNMENT 65 Y12-10d05.p1k chr13 719 1028 196351 196668 F 310 76.45 1349 reject_low 4 ALIGNMENT 0 Y12-10d05.p1k chr10 641 718 537947 538035 F 78 0.00 1349 reject_low 24 ALIGNMENT 0 Y12-10d05.p1k chr10 604 62 538088 538087 C 543 0.00 1349 reject_low 22 ALIGNMENT 0 Y12-10d05.p1k chr12 62 718 656431 656430 F 657 0.00 1349 reject_low 10 ALIGNMENT 0 Y12-10d05.p1k chr10 726 680 537955 538012 C 47 0.00 1349 reject_low 22 ALIGNMENT 0 Y12-10d05.p1k chr07 718 62 567746 567745 C 657 0.00 1349 reject_low 9 ALIGNMENT 0 Y12-10d05.p1k chr16 62 890 62235 62234 F 829 0.00 1349 reject_low 16 ALIGNMENT 43 Y12-10d05.p1k chr04 980 751 883930 884162 C 230 76.09 1349 reject_low 20 ALIGNMENT 56 Y12-10d05.p1k chr03 1028 719 168595 168909 C 310 75.16 1349 reject_low 5 ALIGNMENT 42 Y12-10d05.p1k chr08 1006 751 543632 543888 C 256 76.56 1349 reject_low 19 ALIGNMENT 0 Y12-10d05.p1k chr08 750 62 543889 543888 C 689 0.00 1349 reject_low 19 ALIGNMENT 42 Y12-10d05.p1k chr07 751 1016 535268 535534 F 266 75.56 1349 reject_low 17 ALIGNMENT 0 Y12-10d05.p1k chr04 750 62 992584 992583 C 689 0.00 1349 reject_low 14 ALIGNMENT 0 Y12-10d05.p1k chr10 823 859 538141 538140 F 37 0.00 1349 reject_low 24 ALIGNMENT 0 Y12-10d05.p1k chr07 718 62 562162 562161 C 657 0.00 1349 reject_low 13 ALIGNMENT 25 Y12-10d05.p1k chr10 719 822 538036 538141 F 104 77.88 1349 reject_low 24 ALIGNMENT 38 Y12-10d05.p1k chr16 891 1028 62235 62375 F 138 77.54 1349 reject_low 16 ALIGNMENT 0 Y12-10d05.p1k chr08 750 62 116695 116694 C 689 0.00 1349 reject_low 11 ALIGNMENT 0 Y12-10d05.p1k chr03 718 62 168910 168909 C 657 0.00 1349 reject_low 5 ALIGNMENT 69 Y12-10d05.p1k chr11 1006 719 513196 513483 C 288 78.47 1349 reject_low 3 ALIGNMENT 0 Y12-10d05.p1k chr04 750 62 884163 884162 C 689 0.00 1349 reject_low 20 ALIGNMENT 45 Y12-10d05.p1k chr03 751 980 169255 169491 F 230 76.96 1349 reject_low 18 ALIGNMENT 50 Y12-10d05.p1k chr10 734 967 543395 543632 F 234 77.35 1349 reject_low 23 ALIGNMENT 0 Y12-10d05.p1k chr03 62 750 151570 151569 F 689 0.00 1349 reject_low 21 ALIGNMENT 35 Y12-10d05.p1k chr13 495 879 481364 481750 F 385 72.47 1349 reject_low 1 ALIGNMENT 61 Y12-10d05.p1k chr10 967 727 537714 537954 C 241 78.84 1349 reject_low 22 ALIGNMENT 0 Y12-10d05.p1k chr10 641 733 537947 543394 F 93 0.00 1349 reject_low 23 ALIGNMENT 40 Y12-10d05.p1k chr03 751 964 151570 151783 F 214 77.57 1349 reject_low 21 ALIGNMENT 0 Y12-10d06.q1k chr12 476 690 14003 14002 F 215 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-10d06.q1k chr01 62 95 2333 2332 F 34 0.00 1368 reject_low 8 ALIGNMENT 24 Y12-10d06.q1k chr08 514 554 12887 12928 F 41 87.80 1368 reject_low 12 ALIGNMENT 0 Y12-10d06.q1k chr02 377 690 8414 8413 F 314 0.00 1368 reject_low 10 ALIGNMENT 0 Y12-10d06.q1k chr11 605 690 2850 2849 F 86 0.00 1368 reject_low 6 ALIGNMENT 273 Y12-10d06.q1k chr12 35 415 13553 13929 F 381 91.86 1368 reject_low 11 ALIGNMENT 528 Y12-10d06.q1k chr03 896 35 306855 307689 C 862 89.21 1368 reject_low 1 ALIGNMENT 20 Y12-10d06.q1k chr12 451 475 13979 14003 F 25 96.00 1368 reject_low 11 ALIGNMENT 0 Y12-10d06.q1k chr09 690 614 433246 433245 C 77 0.00 1368 reject_low 5 ALIGNMENT 550 Y12-10d06.q1k chr12 777 33 1062079 1062811 C 745 92.75 1368 accept 0 ALIGNMENT 215 Y12-10d06.q1k chr15 269 818 12249 12791 F 550 81.64 1368 reject_low 9 ALIGNMENT 343 Y12-10d06.q1k chr01 96 568 2333 2800 F 473 91.97 1368 reject_low 8 ALIGNMENT 415 Y12-10d06.q1k chr09 613 33 433245 433820 C 581 91.74 1368 reject_low 5 ALIGNMENT 194 Y12-10d06.p1k chr12 587 1048 1058842 1059301 F 462 81.82 1471 accept 0 ALIGNMENT 402 Y12-10d06.q1k chr07 35 613 6759 7331 F 579 91.19 1368 reject_low 7 ALIGNMENT 0 Y12-10d06.q1k chr07 614 690 7331 7330 F 77 0.00 1368 reject_low 7 ALIGNMENT 0 Y12-10d06.q1k chr15 62 268 12249 12248 F 207 0.00 1368 reject_low 9 ALIGNMENT 0 Y12-10d06.q1k chr08 555 690 12928 12927 F 136 0.00 1368 reject_low 12 ALIGNMENT 171 Y12-10d06.q1k chr08 33 397 12397 12755 F 365 84.11 1368 reject_low 12 ALIGNMENT 573 Y12-10d06.q1k chr10 35 818 9245 10021 F 784 92.09 1368 reject_low 3 ALIGNMENT 414 Y12-10d06.q1k chr11 33 604 2287 2850 F 572 92.13 1368 reject_low 6 ALIGNMENT 0 Y12-10d06.q1k chr01 569 690 2800 2799 F 122 0.00 1368 reject_low 8 ALIGNMENT 0 Y12-10d06.q1k chr08 398 513 12756 12886 F 116 0.00 1368 reject_low 12 ALIGNMENT 258 Y12-10d06.q1k chr02 35 376 8076 8414 F 342 93.27 1368 reject_low 10 ALIGNMENT 426 Y12-10d06.q1k chr14 809 35 781050 781810 C 775 86.97 1368 reject_low 4 ALIGNMENT 573 Y12-10d06.q1k chr09 35 818 9262 10038 F 784 92.09 1368 reject_low 2 ALIGNMENT 0 Y12-10d06.q1k chr12 416 450 13930 13978 F 35 0.00 1368 reject_low 11 ALIGNMENT 35 Y12-10d07.q1k chr15 363 430 1060906 1060973 F 68 83.82 1433 reject_low 6 ALIGNMENT 40 Y12-10d07.q1k chr04 233 277 1503828 1503872 F 45 97.78 1433 reject_low 1,2,3,4 ALIGNMENT 0 Y12-10d07.q1k chr15 62 767 1060654 1060653 F 706 0.00 1433 reject_low 5 ALIGNMENT 0 Y12-10d07.q1k chr04 278 328 1503873 1504472 F 51 0.00 1433 reject_low 3 ALIGNMENT 0 Y12-10d07.q1k chr15 269 362 1060803 1060905 F 94 0.00 1433 reject_low 6 ALIGNMENT 33 Y12-10d07.q1k chr15 768 845 1060654 1060729 F 78 83.33 1433 reject_low 5 ALIGNMENT 0 Y12-10d07.q1k chr04 116 232 1503807 1503827 F 117 0.00 1433 reject_low 1,2,3,4 ALIGNMENT 0 Y12-10d07.q1k chr04 278 733 1503873 1504067 F 456 0.00 1433 reject_low 4 ALIGNMENT 0 Y12-10d07.q1k chr04 516 784 1504659 1504658 F 269 0.00 1433 reject_low 3 ALIGNMENT 418 Y12-10d07.q1k chr04 230 893 1503969 1504629 F 664 89.31 1433 reject_bad_break 0 ALIGNMENT 65 Y12-10d07.q1k chr15 573 685 1060654 1060766 F 113 85.84 1433 reject_low 7 ALIGNMENT 0 Y12-10d07.q1k chr15 476 572 1060767 1060653 F 97 0.00 1433 reject_low 7 ALIGNMENT 78 Y12-10d07.q1k chr04 734 845 1504068 1504177 F 112 91.07 1433 reject_low 4 ALIGNMENT 151 Y12-10d07.q1k chr04 329 515 1504473 1504659 F 187 93.58 1433 reject_low 3 ALIGNMENT 304 Y12-10d07.q1k chr04 329 687 1504263 1504621 F 359 94.99 1433 reject_low 2 ALIGNMENT 930 Y12-10d07.p1k chr04 1114 25 1506800 1507884 C 1090 95.78 1465 reject_bad_break 0 ALIGNMENT 0 Y12-10d07.q1k chr15 431 784 1060973 1060972 F 354 0.00 1433 reject_low 6 ALIGNMENT 31 Y12-10d07.q1k chr15 768 821 1060906 1060958 F 54 87.04 1433 reject_low 7 ALIGNMENT 273 Y12-10d07.q1k chr04 539 925 1504068 1504452 F 387 91.21 1433 reject_low 1 ALIGNMENT 0 Y12-10d07.q1k chr15 62 362 1060654 1060653 F 301 0.00 1433 reject_low 7 ALIGNMENT 0 Y12-10d07.q1k chr04 116 229 1503807 1503968 F 114 0.00 1433 reject_bad_break 0 ALIGNMENT 70 Y12-10d07.q1k chr04 38 115 1503729 1503806 F 78 98.72 1433 reject_bad_break 0 reject_low 1,2,3,4 ALIGNMENT 0 Y12-10d07.q1k chr04 278 328 1503873 1504262 F 51 0.00 1433 reject_low 2 ALIGNMENT 0 Y12-10d07.q1k chr04 278 538 1503873 1504067 F 261 0.00 1433 reject_low 1 ALIGNMENT 0 Y12-10d07.q1k chr15 686 767 1060767 1060905 F 82 0.00 1433 reject_low 7 ALIGNMENT 0 Y12-10d07.q1k chr04 688 784 1504621 1504620 F 97 0.00 1433 reject_low 2 ALIGNMENT 65 Y12-10d07.q1k chr15 363 475 1060654 1060766 F 113 85.84 1433 reject_low 7 ALIGNMENT 0 Y12-10d07.q1k chr15 62 229 1060764 1060763 F 168 0.00 1433 reject_low 6 ALIGNMENT 30 Y12-10d07.q1k chr15 230 268 1060764 1060802 F 39 94.87 1433 reject_low 6 ALIGNMENT 973 Y12-10d08.q1k chr14 36 1155 276091 277224 F 1120 96.25 1372 accept 0 ALIGNMENT 1026 Y12-10d08.p1k chr14 1212 19 279075 280273 C 1194 96.90 1423 accept 0 ALIGNMENT 781 Y12-10d09.q1k chr12 899 32 455902 456778 C 868 97.12 1356 reject_low 1 ALIGNMENT 488 Y12-10d09.p1k chr12 457 1094 451419 452084 F 638 93.57 1385 reject_low 1 ALIGNMENT 0 Y12-10d09.p1k chr12 62 456 451419 451418 F 395 0.00 1385 reject_low 1 ALIGNMENT 798 Y12-10d09.p1k chr12 17 1094 460096 461221 F 1078 92.76 1385 accept 0 ALIGNMENT 200 Y12-10d09.p1k chr12 805 1094 489754 490052 F 290 91.38 1385 reject_low 2 ALIGNMENT 781 Y12-10d09.q1k chr12 899 32 465039 465915 C 868 97.12 1356 accept 0 ALIGNMENT 0 Y12-10d09.p1k chr12 62 804 489754 489753 F 743 0.00 1385 reject_low 2 ALIGNMENT 129 Y12-10d10.p1k chr12 468 952 452326 452802 F 485 76.91 1573 accept_chi 1 ALIGNMENT 754 Y12-10d10.q1k chr08 905 28 434730 435598 C 878 97.49 1487 accept_chi 0 ALIGNMENT 850 Y12-10d11.p1k chr15 15 967 403767 404733 F 953 97.69 1303 accept 0 ALIGNMENT 570 Y12-10d11.q1k chr15 739 44 406324 407012 C 696 95.98 1441 accept 0 ALIGNMENT 893 Y12-10d12.q1k chr12 1195 34 455538 456679 C 1162 93.72 1402 reject_low 2 ALIGNMENT 0 Y12-10d12.p1k chr12 622 876 490543 490542 F 255 0.00 1381 reject_low 3 ALIGNMENT 896 Y12-10d12.q1k chr12 1204 34 464666 465816 C 1171 93.60 1402 accept 0,1 ALIGNMENT 588 Y12-10d12.p1k chr12 18 621 489938 490543 F 604 99.34 1381 reject_low 3 ALIGNMENT 1043 Y12-10d12.p1k chr12 18 1156 461107 462264 F 1139 97.45 1381 accept 1 ALIGNMENT 1043 Y12-10d12.p1k chr12 18 1156 451970 453127 F 1139 97.45 1381 accept 0 ALIGNMENT 1019 Y12-10d13.p1k chr14 21 1183 769696 770867 F 1163 96.99 1376 accept 0 ALIGNMENT 738 Y12-10d13.q1k chr14 904 31 773437 774311 C 874 95.42 1398 accept 0 ALIGNMENT 660 Y12-10d13.q1k chr04 68 877 11735 12543 F 810 94.44 1398 reject_low 2 ALIGNMENT 786 Y12-10d13.q1k chr05 31 904 21577 22451 F 874 97.25 1398 reject_low 1 ALIGNMENT 660 Y12-10d13.q1k chr10 877 68 733172 733980 C 810 94.44 1398 reject_low 3 ALIGNMENT 749 Y12-10d14.q1k chr04 31 945 1181914 1182823 F 915 94.64 1416 accept_chi 1 ALIGNMENT 940 Y12-10d14.p1k chr05 22 1180 357339 358509 F 1159 95.43 1401 accept_chi 0 ALIGNMENT 76 Y12-10d15.q1k chr12 662 739 656935 657012 F 78 100.00 1353 reject_low 8 ALIGNMENT 0 Y12-10d15.q1k chr13 740 822 321222 321221 F 83 0.00 1353 reject_low 9 ALIGNMENT 74 Y12-10d15.q1k chr10 654 735 197223 197304 F 82 97.56 1353 reject_low 7 ALIGNMENT 0 Y12-10d15.q1k chr06 62 662 204912 204911 F 601 0.00 1353 reject_low 11 ALIGNMENT 74 Y12-10d15.q1k chr08 654 735 146226 146307 F 82 97.56 1353 reject_low 6 ALIGNMENT 0 Y12-10d15.q1k chr16 662 62 856971 856970 C 601 0.00 1353 reject_low 12 ALIGNMENT 80 Y12-10d15.q1k chr13 655 736 768360 768441 F 82 100.00 1353 reject_low 5 ALIGNMENT 1081 Y12-10d15.p1k chr07 1278 20 552183 553458 C 1259 96.58 1418 accept_chi 1 ALIGNMENT 0 Y12-10d15.q1k chr11 822 740 219538 219537 C 83 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-10d15.q1k chr13 62 654 768360 768359 F 593 0.00 1353 reject_low 5 ALIGNMENT 0 Y12-10d15.q1k chr11 662 62 517703 517702 C 601 0.00 1353 reject_low 10 ALIGNMENT 934 Y12-10d15.q1k chr07 1172 37 773902 775053 C 1136 95.51 1353 accept_chi 0 ALIGNMENT 0 Y12-10d15.q1k chr11 822 737 517630 517629 C 86 0.00 1353 reject_low 10 ALIGNMENT 0 Y12-10d15.q1k chr10 736 822 197304 197303 F 87 0.00 1353 reject_low 7 ALIGNMENT 72 Y12-10d15.q1k chr13 663 739 321146 321222 F 77 98.70 1353 reject_low 9 ALIGNMENT 0 Y12-10d15.q1k chr13 737 822 768441 768440 F 86 0.00 1353 reject_low 5 ALIGNMENT 71 Y12-10d15.q1k chr11 736 663 517629 517702 C 74 100.00 1353 reject_low 10 ALIGNMENT 461 Y12-10d15.p1k chr12 1161 25 813986 815125 C 1137 81.00 1418 reject_low 2 ALIGNMENT 0 Y12-10d15.q1k chr11 644 62 219634 219633 C 583 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-10d15.q1k chr10 62 653 197223 197222 F 592 0.00 1353 reject_low 7 ALIGNMENT 0 Y12-10d15.q1k chr06 736 822 204984 204983 F 87 0.00 1353 reject_low 11 ALIGNMENT 0 Y12-10d15.q1k chr12 62 661 656935 656934 F 600 0.00 1353 reject_low 8 ALIGNMENT 0 Y12-10d15.q1k chr12 740 822 657012 657011 F 83 0.00 1353 reject_low 8 ALIGNMENT 0 Y12-10d15.q1k chr13 62 662 321146 321145 F 601 0.00 1353 reject_low 9 ALIGNMENT 81 Y12-10d15.q1k chr04 738 649 410373 410464 C 90 97.78 1353 reject_low 4 ALIGNMENT 0 Y12-10d15.q1k chr04 822 739 410374 410373 C 84 0.00 1353 reject_low 4 ALIGNMENT 70 Y12-10d15.q1k chr16 735 663 856898 856970 C 73 100.00 1353 reject_low 12 ALIGNMENT 76 Y12-10d15.q1k chr11 739 645 219537 219633 C 95 94.74 1353 reject_low 3 ALIGNMENT 0 Y12-10d15.q1k chr16 822 736 856899 856898 C 87 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-10d15.q1k chr08 736 822 146307 146306 F 87 0.00 1353 reject_low 6 ALIGNMENT 0 Y12-10d15.q1k chr08 62 653 146226 146225 F 592 0.00 1353 reject_low 6 ALIGNMENT 0 Y12-10d15.q1k chr04 648 62 410465 410464 C 587 0.00 1353 reject_low 4 ALIGNMENT 70 Y12-10d15.q1k chr06 663 735 204912 204984 F 73 100.00 1353 reject_low 11 ALIGNMENT 994 Y12-10d18.q1k chr13 36 1144 102617 103731 F 1109 97.20 1319 accept_chi 0 ALIGNMENT 257 Y12-10d18.p1k chr07 996 239 549367 550124 C 758 79.16 1413 reject_low 2 ALIGNMENT 0 Y12-10d18.p1k chr07 238 62 550125 550124 C 177 0.00 1413 reject_low 2 ALIGNMENT 955 Y12-10d18.p1k chr12 1119 17 810917 812020 C 1103 96.65 1413 accept_chi 1 ALIGNMENT 521 Y12-10d21.p1k chr07 17 1036 274388 275388 F 1020 87.16 1287 accept 0 ALIGNMENT 698 Y12-10d21.q1k chr07 930 34 278838 279729 C 897 93.53 1349 accept 0 ALIGNMENT 982 Y12-10d22.q1k chr14 40 1253 174856 176083 F 1214 94.73 1265 accept 0 ALIGNMENT 992 Y12-10d22.p1k chr14 1173 32 179176 180328 C 1142 96.94 1276 accept 0 ALIGNMENT 912 Y12-10d23.q1k chr03 34 1061 222933 223951 F 1028 96.98 1315 accept 0 ALIGNMENT 1057 Y12-10d23.p1k chr03 1283 24 225670 226924 C 1260 95.24 1293 accept 0 ALIGNMENT 0 Y12-10d24.p1k chr08 62 224 558621 558620 F 163 0.00 1305 reject_low 24 ALIGNMENT 0 Y12-10d24.q1k chr12 67 80 5530 5554 F 14 0.00 1334 reject_low 28 ALIGNMENT 0 Y12-10d24.p1k chr06 964 504 2873 2868 C 461 0.00 1305 reject_low 30 ALIGNMENT 24 Y12-10d24.p1k chr12 373 344 9442 9471 C 30 93.33 1305 reject_low 28 ALIGNMENT 73 Y12-10d24.q1k chr10 36 137 6828 6931 F 102 92.16 1334 reject_low 13 ALIGNMENT 0 Y12-10d24.q1k chr05 62 394 2 1 F 333 0.00 1334 reject_low 9 ALIGNMENT 511 Y12-10d24.q1k chr07 1052 311 1090210 1090943 C 742 92.18 1334 reject_low 5 ALIGNMENT 0 Y12-10d24.q1k chr15 232 62 1091288 1091287 C 171 0.00 1334 reject_low 2 ALIGNMENT 23 Y12-10d24.q1k chr02 36 66 5684 5714 F 31 93.55 1334 reject_low 19 ALIGNMENT 0 Y12-10d24.p1k chr12 224 62 9545 9544 C 163 0.00 1305 reject_low 28 ALIGNMENT 962 Y12-10d24.p1k chr14 1221 20 3374 4564 C 1202 94.34 1305 reject_low 3 ALIGNMENT 0 Y12-10d24.p1k chr12 964 504 3836 3831 C 461 0.00 1305 reject_low 26 ALIGNMENT 0 Y12-10d24.q1k chr10 138 770 6931 6930 F 633 0.00 1334 reject_low 13 ALIGNMENT 516 Y12-10d24.q1k chr16 1052 296 947310 948062 C 757 91.94 1334 reject_low 27 ALIGNMENT 25 Y12-10d24.p1k chr12 57 92 1067094 1067128 F 36 91.67 1305 reject_low 10 ALIGNMENT 29 Y12-10d24.p1k chr08 426 394 3610 3642 C 33 96.97 1305 reject_low 25 ALIGNMENT 71 Y12-10d24.p1k chr08 965 1120 558795 558945 F 156 84.62 1305 reject_low 24 ALIGNMENT 29 Y12-10d24.p1k chr08 394 426 558720 558752 F 33 96.97 1305 reject_low 24 ALIGNMENT 108 Y12-10d24.q1k chr13 81 230 5431 5584 F 150 93.33 1334 reject_low 17 ALIGNMENT 0 Y12-10d24.p1k chr12 393 374 3911 3906 C 20 0.00 1305 reject_low 26 ALIGNMENT 0 Y12-10d24.p1k chr12 447 427 9423 9412 C 21 0.00 1305 reject_low 28 ALIGNMENT 0 Y12-10d24.p1k chr16 427 447 944300 944289 F 21 0.00 1305 reject_low 27 ALIGNMENT 966 Y12-10d24.p1k chr04 20 1205 1527498 1528673 F 1186 94.77 1305 reject_low 8 ALIGNMENT 52 Y12-10d24.p1k chr08 448 503 558743 558798 F 56 98.21 1305 reject_low 24 ALIGNMENT 53 Y12-10d24.p1k chr12 281 225 9488 9544 C 57 98.25 1305 reject_low 28 ALIGNMENT 0 Y12-10d24.q1k chr08 62 219 5 4 F 158 0.00 1334 reject_low 25 ALIGNMENT 23 Y12-10d24.q1k chr12 66 36 1071783 1071813 C 31 93.55 1334 reject_low 10 ALIGNMENT 460 Y12-10d24.q1k chr16 379 1052 2 667 F 674 91.99 1334 reject_low 6 ALIGNMENT 0 Y12-10d24.p1k chr12 93 107 1067129 1067124 F 15 0.00 1305 reject_low 10 ALIGNMENT 86 Y12-10d24.p1k chr12 1210 965 9136 9370 C 246 81.71 1305 reject_low 28 ALIGNMENT 0 Y12-10d24.q1k chr16 67 80 6395 6419 F 14 0.00 1334 reject_low 22 ALIGNMENT 0 Y12-10d24.q1k chr04 80 67 1525557 1525581 C 14 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-10d24.q1k chr13 67 80 5406 5430 F 14 0.00 1334 reject_low 17 ALIGNMENT 0 Y12-10d24.p1k chr16 62 224 944168 944167 F 163 0.00 1305 reject_low 27 ALIGNMENT 0 Y12-10d24.q1k chr02 191 770 5850 5849 F 580 0.00 1334 reject_low 19 ALIGNMENT 0 Y12-10d24.q1k chr02 67 80 5715 5739 F 14 0.00 1334 reject_low 19 ALIGNMENT 0 Y12-10d24.q1k chr08 770 253 556925 556924 C 518 0.00 1334 reject_low 16 ALIGNMENT 0 Y12-10d24.p1k chr08 282 343 558678 558693 F 62 0.00 1305 reject_low 24 ALIGNMENT 24 Y12-10d24.p1k chr13 373 344 3783 3812 C 30 93.33 1305 reject_low 23 ALIGNMENT 0 Y12-10d24.q1k chr13 62 195 2 1 F 134 0.00 1334 reject_low 23 ALIGNMENT 0 Y12-10d24.q1k chr14 62 291 2 1 F 230 0.00 1334 reject_low 3 ALIGNMENT 0 Y12-10d24.q1k chr08 80 67 557093 557117 C 14 0.00 1334 reject_low 16 ALIGNMENT 0 Y12-10d24.p1k chr12 343 282 9472 9487 C 62 0.00 1305 reject_low 28 ALIGNMENT 53 Y12-10d24.p1k chr08 281 225 3685 3741 C 57 98.25 1305 reject_low 25 ALIGNMENT 53 Y12-10d24.p1k chr08 225 281 558621 558677 F 57 98.25 1305 reject_low 24 ALIGNMENT 86 Y12-10d24.p1k chr06 1221 965 2628 2872 C 257 81.32 1305 reject_low 30 ALIGNMENT 0 Y12-10d24.p1k chr02 224 62 4211 4210 C 163 0.00 1305 reject_low 29 ALIGNMENT 23 Y12-10d24.q1k chr12 36 66 11034 11064 F 31 93.55 1334 reject_low 14 ALIGNMENT 83 Y12-10d24.q1k chr02 81 190 5740 5850 F 110 92.73 1334 reject_low 19 ALIGNMENT 0 Y12-10d24.p1k chr08 427 447 558753 558742 F 21 0.00 1305 reject_low 24 ALIGNMENT 0 Y12-10d24.p1k chr16 282 343 944225 944240 F 62 0.00 1305 reject_low 27 ALIGNMENT 511 Y12-10d24.q1k chr05 1052 311 576133 576866 C 742 92.18 1334 reject_low 4 ALIGNMENT 52 Y12-10d24.p1k chr16 448 503 944290 944345 F 56 98.21 1305 reject_low 27 ALIGNMENT 23 Y12-10d24.q1k chr12 36 66 5499 5529 F 31 93.55 1334 reject_low 15,28 ALIGNMENT 116 Y12-10d24.q1k chr08 252 81 556924 557092 C 172 93.02 1334 reject_low 16 ALIGNMENT 0 Y12-10d24.q1k chr16 295 62 948063 948062 C 234 0.00 1334 reject_low 27 ALIGNMENT 0 Y12-10d24.p1k chr06 393 374 2948 2943 C 20 0.00 1305 reject_low 30 ALIGNMENT 0 Y12-10d24.q1k chr15 770 186 1084617 1084616 C 585 0.00 1334 reject_low 21 ALIGNMENT 640 Y12-10d24.q1k chr10 189 1052 2 853 F 864 94.21 1334 ambiguous_tel 0 ALIGNMENT 0 Y12-10d24.p1k chr08 504 964 558799 558794 F 461 0.00 1305 reject_low 24 ALIGNMENT 0 Y12-10d24.p1k chr06 343 282 2974 2989 C 62 0.00 1305 reject_low 30 ALIGNMENT 74 Y12-10d24.p1k chr16 965 1120 944342 944492 F 156 85.26 1305 reject_low 27 ALIGNMENT 0 Y12-10d24.q1k chr15 80 67 1084722 1084746 C 14 0.00 1334 reject_low 21 ALIGNMENT 0 Y12-10d24.p1k chr13 343 282 3813 3828 C 62 0.00 1305 reject_low 23 ALIGNMENT 0 Y12-10d24.q1k chr12 62 191 14 13 F 130 0.00 1334 reject_low 26 ALIGNMENT 0 Y12-10d24.q1k chr12 253 770 11265 11264 F 518 0.00 1334 reject_low 15 ALIGNMENT 534 Y12-10d24.q1k chr08 220 1052 5 835 F 833 90.88 1334 reject_low 25 ALIGNMENT 0 Y12-10d24.p1k chr08 374 393 558724 558719 F 20 0.00 1305 reject_low 24 ALIGNMENT 516 Y12-10d24.q1k chr12 192 1052 14 867 F 861 90.01 1334 reject_low 26 ALIGNMENT 642 Y12-10d24.q1k chr09 186 1052 6 870 F 867 94.12 1334 ambiguous_tel 1 ALIGNMENT 0 Y12-10d24.p1k chr13 393 374 3787 3782 C 20 0.00 1305 reject_low 23 ALIGNMENT 24 Y12-10d24.p1k chr06 373 344 2944 2973 C 30 93.33 1305 reject_low 30 ALIGNMENT 81 Y12-10d24.q1k chr15 185 81 1084616 1084721 C 105 93.33 1334 reject_low 21 ALIGNMENT 968 Y12-10d24.p1k chr12 20 1210 1073699 1074879 F 1191 94.71 1305 reject_low 7 ALIGNMENT 23 Y12-10d24.q1k chr07 66 36 1084483 1084513 C 31 93.55 1334 reject_low 20 ALIGNMENT 24 Y12-10d24.p1k chr02 373 344 4108 4137 C 30 93.33 1305 reject_low 29 ALIGNMENT 962 Y12-10d24.p1k chr07 20 1210 1086404 1087584 F 1191 94.54 1305 reject_low 5 ALIGNMENT 0 Y12-10d24.q1k chr12 67 80 5530 11089 F 14 0.00 1334 reject_low 15 ALIGNMENT 96 Y12-10d24.q1k chr04 250 81 1525383 1525556 C 170 89.41 1334 reject_low 18 ALIGNMENT 24 Y12-10d24.p1k chr08 344 373 558694 558723 F 30 93.33 1305 reject_low 24 ALIGNMENT 53 Y12-10d24.p1k chr06 281 225 2990 3046 C 57 98.25 1305 reject_low 30 ALIGNMENT 1002 Y12-10d24.p1k chr10 1222 20 3744 4935 C 1203 95.43 1305 ambiguous_tel 0 ALIGNMENT 0 Y12-10d24.q1k chr07 770 186 1084353 1084352 C 585 0.00 1334 reject_low 20 ALIGNMENT 86 Y12-10d24.p1k chr12 1210 965 3601 3835 C 246 81.71 1305 reject_low 26 ALIGNMENT 0 Y12-10d24.q1k chr07 80 67 1084458 1084482 C 14 0.00 1334 reject_low 20 ALIGNMENT 23 Y12-10d24.q1k chr16 36 66 6364 6394 F 31 93.55 1334 reject_low 22 ALIGNMENT 545 Y12-10d24.q1k chr13 196 1052 2 851 F 857 90.90 1334 reject_low 23 ALIGNMENT 53 Y12-10d24.p1k chr02 281 225 4154 4210 C 57 98.25 1305 reject_low 29 ALIGNMENT 441 Y12-10d24.q1k chr05 395 1052 2 654 F 658 91.64 1334 reject_low 9 ALIGNMENT 0 Y12-10d24.p1k chr02 447 427 4089 4078 C 21 0.00 1305 reject_low 29 ALIGNMENT 0 Y12-10d24.p1k chr06 447 427 2925 2914 C 21 0.00 1305 reject_low 30 ALIGNMENT 121 Y12-10d24.q1k chr05 185 36 570325 570476 C 150 94.67 1334 reject_low 12 ALIGNMENT 156 Y12-10d24.q1k chr12 252 36 1065084 1065305 C 217 93.55 1334 reject_low 11 ALIGNMENT 0 Y12-10d24.p1k chr13 447 427 3764 3753 C 21 0.00 1305 reject_low 23 ALIGNMENT 52 Y12-10d24.p1k chr06 503 448 2869 2924 C 56 98.21 1305 reject_low 30 ALIGNMENT 0 Y12-10d24.p1k chr08 447 427 3620 3609 C 21 0.00 1305 reject_low 25 ALIGNMENT 968 Y12-10d24.p1k chr15 20 1210 1086663 1087843 F 1191 94.71 1305 reject_low 2 ALIGNMENT 1001 Y12-10d24.p1k chr09 1221 20 3762 4952 C 1202 95.42 1305 ambiguous_tel 1 ALIGNMENT 121 Y12-10d24.q1k chr12 81 252 11090 11265 F 172 93.60 1334 reject_low 15 ALIGNMENT 0 Y12-10d24.p1k chr12 964 504 9371 9366 C 461 0.00 1305 reject_low 28 ALIGNMENT 0 Y12-10d24.q1k chr16 186 770 6525 6524 F 585 0.00 1334 reject_low 22 ALIGNMENT 23 Y12-10d24.q1k chr04 66 36 1525582 1525612 C 31 93.55 1334 reject_low 18 ALIGNMENT 0 Y12-10d24.p1k chr08 393 374 3643 3638 C 20 0.00 1305 reject_low 25 ALIGNMENT 86 Y12-10d24.p1k chr08 1221 965 3323 3567 C 257 81.32 1305 reject_low 25 ALIGNMENT 0 Y12-10d24.p1k chr12 224 62 4010 4009 C 163 0.00 1305 reject_low 26 ALIGNMENT 52 Y12-10d24.p1k chr08 503 448 3564 3619 C 56 98.21 1305 reject_low 25 ALIGNMENT 0 Y12-10d24.p1k chr02 343 282 4138 4153 C 62 0.00 1305 reject_low 29 ALIGNMENT 29 Y12-10d24.p1k chr06 426 394 2915 2947 C 33 96.97 1305 reject_low 30 ALIGNMENT 53 Y12-10d24.p1k chr13 281 225 3829 3885 C 57 98.25 1305 reject_low 23 ALIGNMENT 0 Y12-10d24.p1k chr12 447 427 3888 3877 C 21 0.00 1305 reject_low 26 ALIGNMENT 0 Y12-10d24.p1k chr02 393 374 4112 4107 C 20 0.00 1305 reject_low 29 ALIGNMENT 52 Y12-10d24.p1k chr12 503 448 9367 9422 C 56 98.21 1305 reject_low 28 ALIGNMENT 0 Y12-10d24.p1k chr12 343 282 3937 3952 C 62 0.00 1305 reject_low 26 ALIGNMENT 0 Y12-10d24.q1k chr08 188 62 562518 562517 C 127 0.00 1334 reject_low 24 ALIGNMENT 0 Y12-10d24.p1k chr16 374 393 944271 944266 F 20 0.00 1305 reject_low 27 ALIGNMENT 89 Y12-10d24.p1k chr13 1221 965 3467 3711 C 257 81.71 1305 reject_low 23 ALIGNMENT 0 Y12-10d24.q1k chr12 80 67 1071758 1071782 C 14 0.00 1334 reject_low 10 ALIGNMENT 23 Y12-10d24.q1k chr15 66 36 1084747 1084777 C 31 93.55 1334 reject_low 21 ALIGNMENT 0 Y12-10d24.p1k chr13 964 504 3712 3707 C 461 0.00 1305 reject_low 23 ALIGNMENT 0 Y12-10d24.q1k chr12 770 253 1065085 1065084 C 518 0.00 1334 reject_low 11 ALIGNMENT 0 Y12-10d24.p1k chr02 964 504 4037 4032 C 461 0.00 1305 reject_low 29 ALIGNMENT 29 Y12-10d24.p1k chr13 426 394 3754 3786 C 33 96.97 1305 reject_low 23 ALIGNMENT 962 Y12-10d24.p1k chr05 20 1210 572327 573507 F 1191 94.54 1305 reject_low 4 ALIGNMENT 25 Y12-10d24.p1k chr05 92 57 4555 4589 C 36 91.67 1305 reject_low 9 ALIGNMENT 29 Y12-10d24.p1k chr02 426 394 4079 4111 C 33 96.97 1305 reject_low 29 ALIGNMENT 0 Y12-10d24.p1k chr13 224 62 3886 3885 C 163 0.00 1305 reject_low 23 ALIGNMENT 24 Y12-10d24.p1k chr08 373 344 3639 3668 C 30 93.33 1305 reject_low 25 ALIGNMENT 52 Y12-10d24.p1k chr02 503 448 4033 4088 C 56 98.21 1305 reject_low 29 ALIGNMENT 81 Y12-10d24.q1k chr16 81 185 6420 6525 F 105 93.33 1334 reject_low 22 ALIGNMENT 53 Y12-10d24.p1k chr12 281 225 3953 4009 C 57 98.25 1305 reject_low 26 ALIGNMENT 856 Y12-10d24.p1k chr05 1221 108 3438 4558 C 1114 93.27 1305 reject_low 9 ALIGNMENT 962 Y12-10d24.p1k chr16 1221 20 3283 4473 C 1202 94.34 1305 reject_low 6 ALIGNMENT 0 Y12-10d24.p1k chr08 343 282 3669 3684 C 62 0.00 1305 reject_low 25 ALIGNMENT 0 Y12-10d24.q1k chr16 62 378 2 1 F 317 0.00 1334 reject_low 6 ALIGNMENT 0 Y12-10d24.q1k chr05 310 62 576867 576866 C 249 0.00 1334 reject_low 4 ALIGNMENT 453 Y12-10d24.q1k chr02 379 1052 2 670 F 674 91.69 1334 reject_low 29 ALIGNMENT 451 Y12-10d24.q1k chr12 1052 378 1077505 1078174 C 675 91.56 1334 reject_low 7 ALIGNMENT 416 Y12-10d24.q1k chr04 1052 445 1531304 1531908 C 608 92.11 1334 reject_low 8 ALIGNMENT 24 Y12-10d24.p1k chr16 344 373 944241 944270 F 30 93.33 1305 reject_low 27 ALIGNMENT 0 Y12-10d24.p1k chr06 224 62 3047 3046 C 163 0.00 1305 reject_low 30 ALIGNMENT 24 Y12-10d24.p1k chr12 373 344 3907 3936 C 30 93.33 1305 reject_low 26 ALIGNMENT 534 Y12-10d24.q1k chr15 1052 233 1090469 1091287 C 820 91.10 1334 reject_low 2 ALIGNMENT 0 Y12-10d24.q1k chr07 310 62 1090944 1090943 C 249 0.00 1334 reject_low 5 ALIGNMENT 0 Y12-10d24.q1k chr12 67 770 11064 11063 F 704 0.00 1334 reject_low 14 ALIGNMENT 29 Y12-10d24.p1k chr12 426 394 3878 3910 C 33 96.97 1305 reject_low 26 ALIGNMENT 83 Y12-10d24.p1k chr02 1221 965 3792 4036 C 257 80.93 1305 reject_low 29 ALIGNMENT 0 Y12-10d24.q1k chr12 242 195 1071652 1071643 C 48 0.00 1334 reject_low 10 ALIGNMENT 617 Y12-10d24.q1k chr12 81 1052 5555 6510 F 972 90.95 1334 reject_low 28 ALIGNMENT 0 Y12-10d24.q1k chr12 377 62 1078175 1078174 C 316 0.00 1334 reject_low 7 ALIGNMENT 560 Y12-10d24.q1k chr08 1052 189 561657 562517 C 864 91.20 1334 reject_low 24 ALIGNMENT 0 Y12-10d24.q1k chr09 62 185 6 5 F 124 0.00 1334 ambiguous_tel 1 ALIGNMENT 81 Y12-10d24.q1k chr07 185 81 1084352 1084457 C 105 93.33 1334 reject_low 20 ALIGNMENT 29 Y12-10d24.p1k chr16 394 426 944267 944299 F 33 96.97 1305 reject_low 27 ALIGNMENT 0 Y12-10d24.p1k chr08 224 62 3742 3741 C 163 0.00 1305 reject_low 25 ALIGNMENT 29 Y12-10d24.p1k chr12 426 394 9413 9445 C 33 96.97 1305 reject_low 28 ALIGNMENT 85 Y12-10d24.q1k chr12 194 81 1071644 1071757 C 114 92.98 1334 reject_low 10 ALIGNMENT 23 Y12-10d24.q1k chr13 36 66 5375 5405 F 31 93.55 1334 reject_low 17 ALIGNMENT 0 Y12-10d24.q1k chr05 770 186 570326 570325 C 585 0.00 1334 reject_low 12 ALIGNMENT 0 Y12-10d24.q1k chr04 444 62 1531909 1531908 C 383 0.00 1334 reject_low 8 ALIGNMENT 0 Y12-10d24.p1k chr05 107 93 4559 4554 C 15 0.00 1305 reject_low 9 ALIGNMENT 518 Y12-10d24.q1k chr14 292 1052 2 758 F 761 91.85 1334 reject_low 3 ALIGNMENT 530 Y12-10d24.q1k chr12 1052 243 1070842 1071651 C 810 91.11 1334 reject_low 10 ALIGNMENT 0 Y12-10d24.p1k chr12 393 374 9446 9441 C 20 0.00 1305 reject_low 28 ALIGNMENT 49 Y12-10d24.p1k chr13 503 448 3708 3763 C 56 96.43 1305 reject_low 23 ALIGNMENT 0 Y12-10d24.q1k chr13 231 770 5584 5583 F 540 0.00 1334 reject_low 17 ALIGNMENT 908 Y12-10d24.p1k chr12 108 1210 1067125 1068216 F 1103 95.01 1305 reject_low 10 ALIGNMENT 23 Y12-10d24.q1k chr08 66 36 557118 557148 C 31 93.55 1334 reject_low 16 ALIGNMENT 52 Y12-10d24.p1k chr12 503 448 3832 3887 C 56 98.21 1305 reject_low 26 ALIGNMENT 0 Y12-10d24.p1k chr16 504 964 944346 944341 F 461 0.00 1305 reject_low 27 ALIGNMENT 0 Y12-10d24.q1k chr04 770 251 1525384 1525383 C 520 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-10d24.q1k chr10 62 188 2 1 F 127 0.00 1334 ambiguous_tel 0 ALIGNMENT 0 Y12-10d24.p1k chr08 964 504 3568 3563 C 461 0.00 1305 reject_low 25 ALIGNMENT 0 Y12-10d24.q1k chr02 62 378 2 1 F 317 0.00 1334 reject_low 29 ALIGNMENT 53 Y12-10d24.p1k chr16 225 281 944168 944224 F 57 98.25 1305 reject_low 27 ALIGNMENT 643 Y12-10e01.p1k chr07 14 705 759632 760325 F 692 98.55 1386 accept 0 ALIGNMENT 923 Y12-10e02.p1k chr16 1178 23 234316 235475 C 1156 94.81 1399 accept 0 ALIGNMENT 917 Y12-10e04.q1k chr02 39 1066 439436 440468 F 1028 96.60 1308 accept 0 ALIGNMENT 939 Y12-10e04.p1k chr02 1099 22 443357 444446 C 1078 97.03 1367 accept 0 ALIGNMENT 966 Y12-10e05.p1k chr13 20 1087 236654 237733 F 1068 98.13 1324 accept 0 ALIGNMENT 815 Y12-10e05.q1k chr13 935 32 240644 241552 C 904 97.79 1440 accept 0 ALIGNMENT 738 Y12-10e07.q1k chr08 1075 51 441500 442523 C 1025 92.10 1415 accept 0 ALIGNMENT 1046 Y12-10e08.p1k chr09 1185 19 360245 361414 C 1167 97.34 1429 accept 0 ALIGNMENT 843 Y12-10e08.q1k chr09 29 1036 355886 356902 F 1008 95.93 1391 accept 0 ALIGNMENT 845 Y12-10e09.q1k chr16 27 1004 394325 395316 F 978 97.14 1373 accept 0 ALIGNMENT 995 Y12-10e09.p1k chr16 1180 19 397127 398307 C 1162 96.47 1408 accept 0 ALIGNMENT 698 Y12-10e10.p1k chr12 909 20 441905 442790 C 890 94.16 1455 accept 0 ALIGNMENT 704 Y12-10e10.q1k chr12 29 850 438381 439192 F 822 96.96 1536 accept 0 ALIGNMENT 1006 Y12-10e11.p1k chr14 1265 16 308166 309430 C 1250 95.20 1430 accept 0 ALIGNMENT 959 Y12-10e12.p1k chr01 1096 19 117992 119076 C 1078 98.14 1378 accept 0 ALIGNMENT 877 Y12-10e12.q1k chr01 33 1024 114472 115447 F 992 97.28 1480 accept 0 ALIGNMENT 884 Y12-10e13.q1k chr10 30 1122 136734 137831 F 1093 95.06 1410 accept 0 ALIGNMENT 989 Y12-10e13.p1k chr10 1291 19 140728 142011 C 1273 94.27 1373 accept 0 ALIGNMENT 910 Y12-10e14.q1k chr02 35 1142 100557 101655 F 1108 95.22 1404 accept 0 ALIGNMENT 918 Y12-10e14.p1k chr02 1067 22 106104 107159 C 1046 96.46 1320 accept 0 ALIGNMENT 102 Y12-10e15.q1k chr02 57 903 374566 375412 F 847 71.31 1429 reject_low 1 ALIGNMENT 984 Y12-10e15.p1k chr04 1132 25 552357 553478 C 1108 97.56 1310 accept 0 ALIGNMENT 1002 Y12-10e15.q1k chr04 37 1214 549447 550624 F 1178 95.93 1429 accept 0 ALIGNMENT 826 Y12-10e17.q1k chr11 1130 52 96974 98064 C 1079 93.42 1368 accept 0 ALIGNMENT 513 Y12-10e17.p1k chr11 31 980 91947 92885 F 950 86.74 1335 accept 0 ALIGNMENT 966 Y12-10e18.q1k chr07 40 1149 190803 191920 F 1110 96.22 1387 accept 0 ALIGNMENT 1060 Y12-10e18.p1k chr07 1258 19 195891 197132 C 1240 95.97 1406 accept 0 ALIGNMENT 0 Y12-10e19.q1k chr04 62 707 1183392 1183391 F 646 0.00 1390 reject_low 1 ALIGNMENT 145 Y12-10e19.q1k chr04 708 1099 1183392 1183783 F 392 79.85 1390 reject_low 1 ALIGNMENT 1008 Y12-10e19.p1k chr08 1177 23 330187 331346 C 1155 97.23 1334 accept 0 ALIGNMENT 1038 Y12-10e19.q1k chr08 36 1282 325100 326343 F 1247 95.19 1390 accept 0 ALIGNMENT 1058 Y12-10e20.p1k chr16 1209 18 747430 748629 C 1192 97.15 1374 accept 0 ALIGNMENT 903 Y12-10e20.q1k chr16 27 1084 744491 745538 F 1058 96.60 1418 accept 0 ALIGNMENT 917 Y12-10e21.p1k chr04 27 1173 864673 865838 F 1147 95.47 1241 accept 0 ALIGNMENT 0 Y12-10e21.p1k chr05 290 62 81249 81248 C 229 0.00 1241 reject_low 1 ALIGNMENT 934 Y12-10e21.q1k chr04 1083 34 866600 867643 C 1050 97.24 1362 accept 0 ALIGNMENT 20 Y12-10e21.p1k chr05 331 291 81208 81248 C 41 92.68 1241 reject_low 1 ALIGNMENT 0 Y12-10e21.p1k chr05 806 332 81209 81208 C 475 0.00 1241 reject_low 1 ALIGNMENT 0 Y12-10e22.q1k chr10 316 233 427132 427213 C 84 0.00 1425 reject_bad_break 0 ALIGNMENT 115 Y12-10e22.q1k chr10 720 317 426725 427131 C 404 76.98 1425 reject_bad_break 0 ALIGNMENT 26 Y12-10e22.q1k chr10 232 161 427214 427286 C 72 79.17 1425 reject_bad_break 0 ALIGNMENT 954 Y12-10e23.q1k chr06 35 1152 77603 78739 F 1118 95.71 1255 accept 0 ALIGNMENT 1070 Y12-10e23.p1k chr06 1174 23 81458 82613 C 1152 98.70 1260 accept 0 ALIGNMENT 879 Y12-10e24.q1k chr14 37 1116 500851 501926 F 1080 95.56 1327 accept 0 ALIGNMENT 1071 Y12-10e24.p1k chr14 1288 23 503800 505069 C 1266 95.73 1291 accept 0 ALIGNMENT 473 Y12-10f01.p1k chr15 719 25 837140 837831 C 695 90.36 1423 accept 0 ALIGNMENT 556 Y12-10f01.q1k chr15 54 813 833627 834378 F 760 92.11 1462 accept 0 ALIGNMENT 60 Y12-10f02.q1k chr14 186 290 1735 1838 F 105 86.67 1453 reject_low 53 ALIGNMENT 512 Y12-10f02.q1k chr12 85 915 7530 8364 F 831 88.45 1453 reject_low 16 ALIGNMENT 503 Y12-10f02.q1k chr05 920 104 574275 575094 C 817 88.49 1453 reject_low 3 ALIGNMENT 28 Y12-10f02.q1k chr02 102 153 2103 2154 F 52 84.62 1453 reject_low 12 ALIGNMENT 0 Y12-10f02.q1k chr02 291 529 2218 2217 F 239 0.00 1453 reject_low 79 ALIGNMENT 36 Y12-10f02.q1k chr04 290 242 1530224 1530272 C 49 91.84 1453 reject_low 81 ALIGNMENT 0 Y12-10f02.q1k chr02 112 111 2221 2292 F 0 0.00 1453 reject_low 88 ALIGNMENT 0 Y12-10f02.p1k chr08 221 62 5555 5554 C 160 0.00 1331 reject_low 11 ALIGNMENT 89 Y12-10f02.q1k chr12 102 290 1976 2163 F 189 83.07 1453 reject_low 32 ALIGNMENT 392 Y12-10f02.p1k chr03 806 16 570 1389 C 791 86.22 1331 reject_low 10 ALIGNMENT 0 Y12-10f02.q1k chr14 210 529 1973 1972 F 320 0.00 1453 reject_low 67 ALIGNMENT 52 Y12-10f02.q1k chr08 186 294 1740 1847 F 109 83.49 1453 reject_low 59 ALIGNMENT 0 Y12-10f02.q1k chr12 291 529 7698 7697 F 239 0.00 1453 reject_low 33 ALIGNMENT 30 Y12-10f02.q1k chr02 102 290 2031 2218 F 189 72.49 1453 reject_low 79 ALIGNMENT 513 Y12-10f02.q1k chr16 920 85 945344 946182 C 836 88.40 1453 reject_low 14 ALIGNMENT 0 Y12-10f02.q1k chr09 291 529 2346 2345 F 239 0.00 1453 reject_low 85 ALIGNMENT 49 Y12-10f02.q1k chr02 204 286 2024 2106 F 83 86.75 1453 reject_low 75 ALIGNMENT 45 Y12-10f02.q1k chr08 219 290 1808 1879 F 72 87.50 1453 reject_low 76 ALIGNMENT 499 Y12-10f02.q1k chr04 920 99 1529446 1530270 C 822 88.20 1453 reject_low 4 ALIGNMENT 0 Y12-10f02.q1k chr05 291 529 1914 1913 F 239 0.00 1453 reject_low 77 ALIGNMENT 0 Y12-10f02.q1k chr15 529 291 1089282 1089281 C 239 0.00 1453 reject_low 39 ALIGNMENT 532 Y12-10f02.q1k chr10 235 915 2310 2983 F 681 93.98 1453 reject_low 1 ALIGNMENT 0 Y12-10f02.q1k chr13 291 529 1931 1930 F 239 0.00 1453 reject_low 52 ALIGNMENT 0 Y12-10f02.q1k chr14 291 529 1946 1945 F 239 0.00 1453 reject_low 35 ALIGNMENT 57 Y12-10f02.q1k chr06 80 292 912 1123 F 213 76.06 1453 reject_low 40 ALIGNMENT 502 Y12-10f02.q1k chr08 920 219 559797 560504 C 702 91.88 1453 reject_low 13 ALIGNMENT 322 Y12-10f02.p1k chr02 221 815 812323 812922 F 595 88.07 1331 reject_low 24 ALIGNMENT 20 Y12-10f02.q1k chr10 144 292 2112 2259 F 149 71.81 1453 reject_low 84 ALIGNMENT 0 Y12-10f02.p1k chr10 191 62 7849 7848 C 130 0.00 1331 reject_low 1 ALIGNMENT 307 Y12-10f02.p1k chr08 762 222 5024 5554 C 541 89.09 1331 reject_low 11 ALIGNMENT 0 Y12-10f02.q1k chr02 291 529 2362 2361 F 239 0.00 1453 reject_low 48 ALIGNMENT 0 Y12-10f02.q1k chr12 529 291 1069763 1069762 C 239 0.00 1453 reject_low 90 ALIGNMENT 0 Y12-10f02.q1k chr12 291 529 7590 7589 F 239 0.00 1453 reject_low 89 ALIGNMENT 45 Y12-10f02.q1k chr08 209 102 560442 560548 C 108 81.48 1453 reject_low 56 ALIGNMENT 0 Y12-10f02.q1k chr07 529 291 1089023 1089022 C 239 0.00 1453 reject_low 41 ALIGNMENT 0 Y12-10f02.q1k chr16 529 287 946271 946270 C 243 0.00 1453 reject_low 71 ALIGNMENT 0 Y12-10f02.p1k chr15 62 191 1083837 1083836 F 130 0.00 1331 reject_low 9 ALIGNMENT 0 Y12-10f02.q1k chr13 210 529 2066 2065 F 320 0.00 1453 reject_low 66 ALIGNMENT 683 Y12-10f02.p1k chr10 1087 192 6937 7848 C 896 95.42 1331 reject_low 1 ALIGNMENT 0 Y12-10f02.q1k chr12 529 291 1076318 1076317 C 239 0.00 1453 reject_low 46 ALIGNMENT 0 Y12-10f02.q1k chr15 529 291 1089390 1089389 C 239 0.00 1453 reject_low 54 ALIGNMENT 29 Y12-10f02.q1k chr06 80 153 1020 1093 F 74 79.73 1453 reject_low 91 ALIGNMENT 39 Y12-10f02.q1k chr16 102 209 1776 1882 F 108 79.63 1453 reject_low 68 ALIGNMENT 409 Y12-10f02.p1k chr14 192 815 783197 783819 F 624 91.03 1331 reject_low 18 ALIGNMENT 505 Y12-10f02.q1k chr07 920 99 1088352 1089176 C 822 88.44 1453 reject_low 6 ALIGNMENT 74 Y12-10f02.q1k chr07 290 135 1089022 1089176 C 156 83.33 1453 reject_low 41 ALIGNMENT 0 Y12-10f02.q1k chr16 529 210 945988 945987 C 320 0.00 1453 reject_low 69 ALIGNMENT 20 Y12-10f02.q1k chr02 45 121 2154 2230 F 77 75.32 1453|0,10 reject_low 88 ALIGNMENT 34 Y12-10f02.q1k chr06 85 196 953 1064 F 112 77.68 1453 reject_low 28 ALIGNMENT 0 Y12-10f02.p1k chr04 220 62 955 954 C 159 0.00 1331 reject_low 23 ALIGNMENT 495 Y12-10f02.q1k chr12 920 219 1075647 1076352 C 702 91.60 1453 reject_low 27 ALIGNMENT 0 Y12-10f02.q1k chr07 529 210 1088996 1088995 C 320 0.00 1453 reject_low 64 ALIGNMENT 39 Y12-10f02.q1k chr12 102 209 7619 7725 F 108 79.63 1453 reject_low 65 ALIGNMENT 0 Y12-10f02.q1k chr06 291 529 941 940 F 239 0.00 1453 reject_low 82 ALIGNMENT 62 Y12-10f02.q1k chr12 85 290 1851 2055 F 206 77.67 1453 reject_low 42 ALIGNMENT 39 Y12-10f02.q1k chr05 209 102 574918 575024 C 108 79.63 1453 reject_low 63 ALIGNMENT 0 Y12-10f02.q1k chr09 293 529 2288 2287 F 237 0.00 1453 reject_low 87 ALIGNMENT 0 Y12-10f02.p1k chr10 62 220 744767 744766 F 159 0.00 1331 reject_low 21 ALIGNMENT 0 Y12-10f02.p1k chr02 191 62 6689 6688 C 130 0.00 1331 reject_low 12 ALIGNMENT 0 Y12-10f02.q1k chr12 210 529 7725 7724 F 320 0.00 1453 reject_low 65 ALIGNMENT 33 Y12-10f02.q1k chr02 85 153 2302 2370 F 69 82.61 1453 reject_low 57 ALIGNMENT 0 Y12-10f02.q1k chr06 154 248 1094 1127 F 95 0.00 1453 reject_low 91 ALIGNMENT 89 Y12-10f02.q1k chr16 290 102 946014 946201 C 189 83.07 1453 reject_low 37 ALIGNMENT 0 Y12-10f02.p1k chr14 62 191 783197 783196 F 130 0.00 1331 reject_low 18 ALIGNMENT 408 Y12-10f02.p1k chr09 221 815 439013 439610 F 595 91.93 1331 reject_low 19 ALIGNMENT 62 Y12-10f02.q1k chr16 290 85 946122 946326 C 206 77.67 1453 reject_low 43 ALIGNMENT 53 Y12-10f02.q1k chr08 286 186 560581 560680 C 101 85.15 1453 reject_low 62 ALIGNMENT 509 Y12-10f02.q1k chr14 85 915 1778 2612 F 831 88.33 1453 reject_low 7 ALIGNMENT 0 Y12-10f02.q1k chr06 291 529 977 976 F 239 0.00 1453 reject_low 78 ALIGNMENT 509 Y12-10f02.q1k chr16 85 915 1687 2521 F 831 88.33 1453 reject_low 8 ALIGNMENT 60 Y12-10f02.q1k chr02 186 290 1755 1858 F 105 86.67 1453 reject_low 51 ALIGNMENT 0 Y12-10f02.q1k chr02 287 529 2106 2105 F 243 0.00 1453 reject_low 75 ALIGNMENT 79 Y12-10f02.q1k chr02 85 286 2050 2250 F 202 80.69 1453 reject_low 31 ALIGNMENT 0 Y12-10f02.q1k chr02 287 529 2178 2177 F 243 0.00 1453 reject_low 47 ALIGNMENT 406 Y12-10f02.p1k chr07 221 815 1083590 1084179 F 595 92.27 1331 reject_low 6 ALIGNMENT 0 Y12-10f02.q1k chr06 293 529 1123 1122 F 237 0.00 1453 reject_low 40 ALIGNMENT 488 Y12-10f02.q1k chr08 102 915 1764 2561 F 814 88.57 1453 reject_low 11 ALIGNMENT 368 Y12-10f02.p1k chr02 815 192 6059 6688 C 624 89.10 1331 reject_low 12 ALIGNMENT 0 Y12-10f02.q1k chr05 210 251 1942 1983 F 42 0.00 1453 reject_low 92 ALIGNMENT 683 Y12-10f02.p1k chr09 1087 192 6954 7865 C 896 95.42 1331 accept_tel 0 ALIGNMENT 60 Y12-10f02.q1k chr12 290 186 1069762 1069865 C 105 86.67 1453 reject_low 90 ALIGNMENT 352 Y12-10f02.p1k chr15 192 815 1083837 1084443 F 624 88.78 1331 reject_low 9 ALIGNMENT 529 Y12-10f02.q1k chr09 235 915 2327 3000 F 681 93.83 1453 accept_tel 0 ALIGNMENT 0 Y12-10f02.q1k chr05 154 234 1923 2002 F 81 0.00 1453 reject_low 26 ALIGNMENT 35 Y12-10f02.q1k chr07 290 244 1089130 1089176 C 47 91.49 1453 reject_low 83 ALIGNMENT 60 Y12-10f02.q1k chr16 186 290 1644 1747 F 105 86.67 1453 reject_low 55 ALIGNMENT 317 Y12-10f02.p1k chr13 269 815 923535 924083 F 547 89.21 1331 reject_low 25 ALIGNMENT 0 Y12-10f02.q1k chr14 291 529 1838 1837 F 239 0.00 1453 reject_low 53 ALIGNMENT 39 Y12-10f02.q1k chr16 209 102 945987 946093 C 108 79.63 1453 reject_low 69 ALIGNMENT 45 Y12-10f02.q1k chr05 231 290 1855 1914 F 60 91.67 1453 reject_low 77 ALIGNMENT 20 Y12-10f02.q1k chr06 249 292 1128 1171 F 44 81.82 1453 reject_low 91 ALIGNMENT 86 Y12-10f02.q1k chr15 290 102 1089281 1089468 C 189 82.54 1453 reject_low 39 ALIGNMENT 388 Y12-10f02.p1k chr14 809 222 6890 7478 C 588 91.16 1331 reject_low 7 ALIGNMENT 90 Y12-10f02.q1k chr06 104 290 900 1085 F 187 83.42 1453 reject_low 30 ALIGNMENT 68 Y12-10f02.q1k chr02 144 286 2037 2178 F 143 83.22 1453 reject_low 47 ALIGNMENT 50 Y12-10f02.q1k chr16 286 186 946270 946369 C 101 84.16 1453 reject_low 71 ALIGNMENT 71 Y12-10f02.q1k chr04 290 135 1530116 1530270 C 156 82.69 1453 reject_low 45 ALIGNMENT 35 Y12-10f02.q1k chr06 241 290 892 941 F 50 90.00 1453 reject_low 82 ALIGNMENT 62 Y12-10f02.q1k chr02 102 290 2175 2362 F 189 78.31 1453 reject_low 48 ALIGNMENT 20 Y12-10f02.q1k chr12 153 104 1076417 1076466 C 50 80.00 1453 reject_low 27,90 ALIGNMENT 0 Y12-10f02.q1k chr12 291 529 2163 2162 F 239 0.00 1453 reject_low 32 ALIGNMENT 0 Y12-10f02.q1k chr10 154 234 2194 2309 F 81 0.00 1453 reject_low 1 ALIGNMENT 0 Y12-10f02.q1k chr05 291 529 2022 2021 F 239 0.00 1453 reject_low 92 ALIGNMENT 355 Y12-10f02.p1k chr10 221 815 744767 745356 F 595 89.92 1331 reject_low 21 ALIGNMENT 0 Y12-10f02.q1k chr16 529 291 946015 946014 C 239 0.00 1453 reject_low 37 ALIGNMENT 0 Y12-10f02.q1k chr04 529 291 1530225 1530224 C 239 0.00 1453 reject_low 81 ALIGNMENT 0 Y12-10f02.q1k chr08 529 287 560582 560581 C 243 0.00 1453 reject_low 62 ALIGNMENT 0 Y12-10f02.q1k chr02 154 218 2155 2326 F 65 0.00 1453 reject_low 12 ALIGNMENT 0 Y12-10f02.p1k chr01 191 62 883 882 C 130 0.00 1331 reject_low 20 ALIGNMENT 0 Y12-10f02.p1k chr07 62 220 1083590 1083589 F 159 0.00 1331 reject_low 6 ALIGNMENT 0 Y12-10f02.q1k chr06 197 234 1065 1209 F 38 0.00 1453 reject_low 28 ALIGNMENT 512 Y12-10f02.q1k chr13 85 915 1871 2705 F 831 88.45 1453 reject_low 17 ALIGNMENT 0 Y12-10f02.q1k chr02 272 529 1695 1694 F 258 0.00 1453 reject_low 73 ALIGNMENT 24 Y12-10f02.q1k chr09 252 290 2308 2346 F 39 87.18 1453 reject_low 85 ALIGNMENT 0 Y12-10f02.q1k chr06 293 529 1171 1170 F 237 0.00 1453 reject_low 91 ALIGNMENT 0 Y12-10f02.q1k chr08 291 529 1879 1878 F 239 0.00 1453 reject_low 76 ALIGNMENT 0 Y12-10f02.q1k chr16 291 529 1855 1854 F 239 0.00 1453 reject_low 36 ALIGNMENT 343 Y12-10f02.p1k chr11 277 815 665546 666081 F 539 91.09 1331 reject_low 22 ALIGNMENT 48 Y12-10f02.q1k chr12 186 275 1808 1896 F 90 85.56 1453 reject_low 72 ALIGNMENT 422 Y12-10f02.p1k chr12 192 815 1064197 1064824 F 624 91.51 1331 reject_low 5 ALIGNMENT 0 Y12-10f02.q1k chr02 210 529 2389 2388 F 320 0.00 1453 reject_low 88 ALIGNMENT 0 Y12-10f02.p1k chr09 62 220 439013 439012 F 159 0.00 1331 reject_low 19 ALIGNMENT 24 Y12-10f02.q1k chr10 252 290 2291 2329 F 39 87.18 1453 reject_low 86 ALIGNMENT 0 Y12-10f02.q1k chr12 291 529 2055 2054 F 239 0.00 1453 reject_low 42 ALIGNMENT 0 Y12-10f02.q1k chr16 210 529 1882 1881 F 320 0.00 1453 reject_low 68 ALIGNMENT 89 Y12-10f02.q1k chr16 102 290 1668 1855 F 189 83.07 1453 reject_low 36 ALIGNMENT 0 Y12-10f02.q1k chr08 529 210 560443 560442 C 320 0.00 1453 reject_low 56 ALIGNMENT 0 Y12-10f02.q1k chr10 293 529 2259 2258 F 237 0.00 1453 reject_low 84 ALIGNMENT 0 Y12-10f02.q1k chr06 287 529 1009 1008 F 243 0.00 1453 reject_low 80 ALIGNMENT 39 Y12-10f02.q1k chr12 102 209 2084 2190 F 108 79.63 1453|0,12 reject_low 89 ALIGNMENT 39 Y12-10f02.q1k chr13 102 209 1960 2066 F 108 79.63 1453 reject_low 66 ALIGNMENT 72 Y12-10f02.q1k chr05 290 140 574945 575094 C 151 83.44 1453 reject_low 44 ALIGNMENT 504 Y12-10f02.q1k chr12 920 85 1068984 1069822 C 836 88.04 1453 reject_low 5 ALIGNMENT 60 Y12-10f02.q1k chr13 186 290 1828 1931 F 105 86.67 1453 reject_low 52 ALIGNMENT 0 Y12-10f02.q1k chr02 291 529 1822 1821 F 239 0.00 1453 reject_low 74 ALIGNMENT 440 Y12-10f02.p1k chr04 192 806 1524527 1525144 F 615 92.85 1331 reject_low 4 ALIGNMENT 0 Y12-10f02.q1k chr02 287 529 2250 2249 F 243 0.00 1453 reject_low 31 ALIGNMENT 118 Y12-10f02.p1k chr05 16 159 566735 566880 F 144 97.22 1331|0,5 reject_low 3 ALIGNMENT 0 Y12-10f02.q1k chr12 276 529 1896 1895 F 254 0.00 1453 reject_low 72 ALIGNMENT 0 Y12-10f02.q1k chr12 198 197 2179 7498 F 0 0.00 1453 reject_low 89 ALIGNMENT 69 Y12-10f02.q1k chr12 290 140 1076317 1076466 C 151 82.78 1453 reject_low 46 ALIGNMENT 457 Y12-10f02.q1k chr06 235 915 1210 1866 F 681 91.19 1453 reject_low 28 ALIGNMENT 24 Y12-10f02.q1k chr05 252 290 1984 2022 F 39 87.18 1453 reject_low 92 ALIGNMENT 355 Y12-10f02.p1k chr16 815 192 6698 7304 C 624 88.94 1331 reject_low 8 ALIGNMENT 0 Y12-10f02.q1k chr12 529 291 1069655 1069654 C 239 0.00 1453 reject_low 38 ALIGNMENT 86 Y12-10f02.q1k chr12 290 102 1069654 1069841 C 189 82.54 1453 reject_low 38 ALIGNMENT 0 Y12-10f02.q1k chr08 529 154 560462 560461 C 376 0.00 1453 reject_low 58 ALIGNMENT 0 Y12-10f02.q1k chr02 154 529 2370 2369 F 376 0.00 1453 reject_low 57 ALIGNMENT 24 Y12-10f02.q1k chr05 135 209 1868 1941 F 75 78.67 1453 reject_low 92 ALIGNMENT 0 Y12-10f02.q1k chr08 295 529 1847 1846 F 235 0.00 1453 reject_low 59 ALIGNMENT 0 Y12-10f02.q1k chr02 293 529 2004 2003 F 237 0.00 1453 reject_low 29 ALIGNMENT 33 Y12-10f02.q1k chr08 153 85 560461 560529 C 69 82.61 1453 reject_low 58 ALIGNMENT 0 Y12-10f02.q1k chr05 529 291 574946 574945 C 239 0.00 1453 reject_low 44 ALIGNMENT 0 Y12-10f02.q1k chr12 218 154 1076353 1076416 C 65 0.00 1453 reject_low 27 ALIGNMENT 532 Y12-10f02.p1k chr07 815 16 238 1039 C 800 91.12 1331 reject_low 2 ALIGNMENT 520 Y12-10f02.q1k chr05 235 915 2003 2676 F 681 93.39 1453 reject_low 26 ALIGNMENT 0 Y12-10f02.q1k chr04 529 291 1530117 1530116 C 239 0.00 1453 reject_low 45 ALIGNMENT 47 Y12-10f02.q1k chr02 186 271 1611 1695 F 86 86.05 1453 reject_low 73 ALIGNMENT 0 Y12-10f02.q1k chr16 291 529 1747 1746 F 239 0.00 1453 reject_low 55 ALIGNMENT 0 Y12-10f02.q1k chr08 529 291 560470 560469 C 239 0.00 1453 reject_low 49 ALIGNMENT 0 Y12-10f02.p1k chr04 62 191 1524527 1524526 F 130 0.00 1331 reject_low 4 ALIGNMENT 387 Y12-10f02.p1k chr01 815 192 257 882 C 624 89.74 1331 reject_low 20 ALIGNMENT 62 Y12-10f02.q1k chr08 290 102 560469 560656 C 189 78.31 1453 reject_low 49 ALIGNMENT 0 Y12-10f02.p1k chr05 192 191 566946 569514 F 0 0.00 1331 reject_low 3 ALIGNMENT 0 Y12-10f02.q1k chr10 291 529 2329 2328 F 239 0.00 1453 reject_low 86 ALIGNMENT 89 Y12-10f02.q1k chr12 102 290 7511 7698 F 189 83.07 1453 reject_low 33 ALIGNMENT 0 Y12-10f02.p1k chr09 191 62 7866 7865 C 130 0.00 1331 accept_tel 0 ALIGNMENT 512 Y12-10f02.q1k chr12 85 915 1995 2829 F 831 88.45 1453 reject_low 15 ALIGNMENT 0 Y12-10f02.p1k chr02 62 220 812323 812322 F 159 0.00 1331 reject_low 24 ALIGNMENT 326 Y12-10f02.p1k chr04 815 221 355 954 C 595 88.24 1331 reject_low 23 ALIGNMENT 504 Y12-10f02.q1k chr15 920 85 1088611 1089449 C 836 88.04 1453 reject_low 9 ALIGNMENT 0 Y12-10f02.p1k chr12 62 191 1064197 1064196 F 130 0.00 1331 reject_low 5 ALIGNMENT 0 Y12-10f02.p1k chr14 221 62 7479 7478 C 160 0.00 1331 reject_low 7 ALIGNMENT 0 Y12-10f02.q1k chr02 291 529 1858 1857 F 239 0.00 1453 reject_low 51 ALIGNMENT 89 Y12-10f02.q1k chr13 102 290 1852 2039 F 189 83.07 1453 reject_low 34 ALIGNMENT 0 Y12-10f02.q1k chr16 529 291 946159 946158 C 239 0.00 1453 reject_low 70 ALIGNMENT 39 Y12-10f02.q1k chr14 102 209 1867 1973 F 108 79.63 1453 reject_low 67 ALIGNMENT 20 Y12-10f02.q1k chr09 249 292 2245 2288 F 44 81.82 1453 reject_low 87 ALIGNMENT 44 Y12-10f02.q1k chr16 290 102 946158 946345 C 189 75.13 1453 reject_low 70 ALIGNMENT 45 Y12-10f02.q1k chr02 102 209 2283 2389 F 108 81.48 1453|10,0 reject_low 88 ALIGNMENT 38 Y12-10f02.q1k chr06 219 286 942 1009 F 68 85.29 1453 reject_low 80 ALIGNMENT 41 Y12-10f02.q1k chr08 85 209 1783 1906 F 125 78.40 1453 reject_low 50 ALIGNMENT 56 Y12-10f02.q1k chr10 211 290 2106 2185 F 80 90.00 1453 reject_low 61 ALIGNMENT 0 Y12-10f02.p1k chr13 62 268 923535 923534 F 207 0.00 1331 reject_low 25 ALIGNMENT 0 Y12-10f02.q1k chr05 529 210 574919 574918 C 320 0.00 1453 reject_low 63 ALIGNMENT 37 Y12-10f02.p1k chr05 150 191 566904 566945 F 42 97.62 1331|5,0 reject_low 3 ALIGNMENT 27 Y12-10f02.q1k chr05 85 153 1854 1922 F 69 79.71 1453 reject_low 26 ALIGNMENT 0 Y12-10f02.q1k chr16 529 291 946123 946122 C 239 0.00 1453 reject_low 43 ALIGNMENT 0 Y12-10f02.q1k chr06 291 529 1085 1084 F 239 0.00 1453 reject_low 30 ALIGNMENT 79 Y12-10f02.q1k chr02 45 292 1758 2004 F 248 77.82 1453 reject_low 29 ALIGNMENT 0 Y12-10f02.p1k chr11 62 276 665546 665545 F 215 0.00 1331 reject_low 22 ALIGNMENT 60 Y12-10f02.q1k chr15 290 186 1089389 1089492 C 105 86.67 1453 reject_low 54 ALIGNMENT 0 Y12-10f02.p1k chr16 191 62 7305 7304 C 130 0.00 1331 reject_low 8 ALIGNMENT 29 Y12-10f02.q1k chr10 80 153 2120 2193 F 74 79.73 1453 reject_low 1 ALIGNMENT 39 Y12-10f02.q1k chr07 209 102 1088995 1089101 C 108 79.63 1453 reject_low 64 ALIGNMENT 42 Y12-10f02.q1k chr06 219 290 906 977 F 72 86.11 1453 reject_low 78 ALIGNMENT 0 Y12-10f02.q1k chr13 291 529 2039 2038 F 239 0.00 1453 reject_low 34 ALIGNMENT 502 Y12-10f02.q1k chr02 219 915 2327 3030 F 697 91.97 1453 reject_low 12 ALIGNMENT 60 Y12-10f02.q1k chr12 186 290 7487 7590 F 105 86.67 1453|12,0 reject_low 89 ALIGNMENT 0 Y12-10f02.q1k chr08 210 529 1906 1905 F 320 0.00 1453 reject_low 50 ALIGNMENT 0 Y12-10f02.q1k chr10 291 529 2185 2184 F 239 0.00 1453 reject_low 61 ALIGNMENT 0 Y12-10f02.q1k chr12 291 529 2019 2018 F 239 0.00 1453 reject_low 60 ALIGNMENT 47 Y12-10f02.q1k chr12 102 290 1832 2019 F 189 75.66 1453 reject_low 60 ALIGNMENT 89 Y12-10f02.q1k chr14 102 290 1759 1946 F 189 83.07 1453 reject_low 35 ALIGNMENT 387 Y12-10f02.p1k chr05 192 815 569515 570134 F 624 90.38 1331 reject_low 3 ALIGNMENT 41 Y12-10f02.q1k chr02 102 290 1635 1822 F 189 74.60 1453 reject_low 74 ALIGNMENT 0 Y12-10f02.q1k chr12 185 154 1069866 1076416 C 32 0.00 1453 reject_low 90 ALIGNMENT 0 Y12-10f02.p1k chr05 155 154 566876 566908 F 0 0.00 1331 reject_low 3 ALIGNMENT 0 Y12-10f02.q1k chr07 529 291 1089131 1089130 C 239 0.00 1453 reject_low 83 ALIGNMENT 1002 Y12-10f03.p1k chr15 18 1126 794630 795755 F 1109 97.93 1358 accept_chi 0 ALIGNMENT 944 Y12-10f03.q1k chr07 37 1109 857904 858991 F 1073 97.30 1349 accept_chi 1 ALIGNMENT 712 Y12-10f04.q1k chr15 32 843 588800 589608 F 812 97.41 1426 accept 0 ALIGNMENT 761 Y12-10f04.p1k chr15 919 17 592922 593819 C 903 95.79 1488 accept 0 ALIGNMENT 933 Y12-10f05.p1k chr15 1051 21 570188 571231 C 1031 97.48 1349 accept 0 ALIGNMENT 1027 Y12-10f05.q1k chr15 36 1263 566414 567646 F 1228 95.93 1421 accept 0 ALIGNMENT 822 Y12-10f07.q1k chr08 902 32 226446 227315 C 871 98.62 1442 accept 0 ALIGNMENT 961 Y12-10f07.p1k chr08 17 1115 221511 222628 F 1099 97.09 1345 accept 0 ALIGNMENT 865 Y12-10f09.p1k chr15 1035 15 516099 517116 C 1021 96.08 1436 accept 0 ALIGNMENT 693 Y12-10f09.q1k chr15 29 791 512743 513504 F 763 98.03 1563 accept 0 ALIGNMENT 873 Y12-10f11.p1k chr15 16 1008 550592 551599 F 993 96.88 1388 accept 0 ALIGNMENT 97 Y12-10f13.p1k chr12 792 404 212233 212616 C 389 76.09 1446 accept_chi 1 ALIGNMENT 725 Y12-10f13.q1k chr16 30 882 811137 811984 F 853 96.01 1436 accept_chi 0 ALIGNMENT 693 Y12-10f14.p1k chr02 37 1028 577196 578183 F 992 90.83 1384 accept 0 ALIGNMENT 690 Y12-10f14.q1k chr02 832 36 580995 581781 C 797 96.99 1451 accept 0 ALIGNMENT 929 Y12-10f15.p1k chr01 20 1187 6307 7465 F 1168 95.63 1400 accept 0 ALIGNMENT 867 Y12-10f15.q1k chr01 1069 37 10334 11378 C 1033 96.71 1359 accept 0 ALIGNMENT 0 Y12-10f16.p1k chr02 62 691 606653 606652 F 630 0.00 1352 reject_low 1 ALIGNMENT 232 Y12-10f16.p1k chr02 692 1100 606653 607068 F 409 84.11 1352 reject_low 1 ALIGNMENT 838 Y12-10f16.q1k chr16 1016 42 410037 411017 C 975 96.72 1388 accept 0 ALIGNMENT 906 Y12-10f16.p1k chr16 21 1100 406383 407469 F 1080 95.19 1352 accept 0 ALIGNMENT 926 Y12-10f17.q1k chr16 37 1075 634103 635153 F 1039 97.79 1358 accept 0 ALIGNMENT 1029 Y12-10f17.p1k chr16 1282 22 637151 638425 C 1261 95.16 1402 accept 0 ALIGNMENT 534 Y12-10f18.p1k chr04 33 881 1007990 1008823 F 849 89.40 1458 accept_chi 0 ALIGNMENT 521 Y12-10f18.q1k chr13 925 281 513770 514410 C 645 94.73 1431 accept_chi 1 ALIGNMENT 923 Y12-10f19.p1k chr15 1076 17 799552 800609 C 1060 97.08 1396 accept 0 ALIGNMENT 847 Y12-10f19.q1k chr15 27 1072 797490 798542 F 1046 95.22 1351 accept 0 ALIGNMENT 20 Y12-10f20.p1k chr04 309 278 1385465 1385496 C 32 100.00 1317 reject_low 2 ALIGNMENT 1009 Y12-10f20.q1k chr07 1244 36 614851 616068 C 1209 95.78 1334 accept 0 ALIGNMENT 0 Y12-10f20.p1k chr04 872 310 1385466 1385465 C 563 0.00 1317 reject_low 2 ALIGNMENT 924 Y12-10f20.p1k chr07 20 1119 611477 612594 F 1100 96.45 1317 accept 0 ALIGNMENT 24 Y12-10f20.p1k chr05 275 311 31449 31485 F 37 97.30 1317 reject_low 1 ALIGNMENT 0 Y12-10f20.p1k chr04 277 62 1385497 1385496 C 216 0.00 1317 reject_low 2 ALIGNMENT 0 Y12-10f20.p1k chr05 312 872 31485 31484 F 561 0.00 1317 reject_low 1 ALIGNMENT 0 Y12-10f20.p1k chr05 62 274 31449 31448 F 213 0.00 1317 reject_low 1 ALIGNMENT 1100 Y12-10f21.p1k chr12 1270 15 461379 462649 C 1256 96.42 1288 accept 0 ALIGNMENT 0 Y12-10f21.p1k chr12 948 62 490544 490543 C 887 0.00 1288 reject_low 3 ALIGNMENT 1100 Y12-10f21.p1k chr12 1270 15 452242 453512 C 1256 96.42 1288 reject_low 2 ALIGNMENT 959 Y12-10f21.q1k chr12 38 1158 467001 468108 F 1121 96.61 1346 reject_low 1 ALIGNMENT 959 Y12-10f21.q1k chr12 38 1158 457864 458971 F 1121 96.61 1346 accept 0 ALIGNMENT 177 Y12-10f21.p1k chr12 1270 949 490210 490543 C 322 86.65 1288 reject_low 3 ALIGNMENT 175 Y12-10f22.q1k chr14 155 584 174952 175375 F 430 81.86 1415 accept 0 ALIGNMENT 0 Y12-10f23.q1k chr16 292 128 850963 850962 C 165 0.00 1471 reject_low 25 ALIGNMENT 159 Y12-10f23.q1k chr03 506 292 142864 143078 C 215 93.95 1471 reject_low 18 ALIGNMENT 179 Y12-10f23.q1k chr11 506 293 517213 517426 C 214 97.20 1471 reject_low 11 ALIGNMENT 177 Y12-10f23.q1k chr07 292 506 401961 402175 F 215 96.74 1471 reject_low 14 ALIGNMENT 0 Y12-10f23.q1k chr03 283 128 168939 168938 C 156 0.00 1471 reject_low 27 ALIGNMENT 0 Y12-10f23.q1k chr16 466 451 850354 850353 C 16 0.00 1471 reject_low 31 ALIGNMENT 0 Y12-10f23.q1k chr16 292 128 856551 856550 C 165 0.00 1471 reject_low 26 ALIGNMENT 179 Y12-10f23.q1k chr13 506 293 362704 362917 C 214 97.20 1471 reject_low 13 ALIGNMENT 0 Y12-10f23.q1k chr16 409 128 850393 850392 C 282 0.00 1471 reject_low 31 ALIGNMENT 0 Y12-10f23.q1k chr13 128 285 184163 184162 F 158 0.00 1471 reject_low 3 ALIGNMENT 0 Y12-10f23.q1k chr10 128 292 472377 472376 F 165 0.00 1471 reject_low 20 ALIGNMENT 179 Y12-10f23.q1k chr07 506 293 817516 817729 C 214 97.20 1471 reject_low 10 ALIGNMENT 0 Y12-10f23.q1k chr02 128 292 226624 226623 F 165 0.00 1471 reject_low 9 ALIGNMENT 64 Y12-10f23.q1k chr03 450 284 168771 168938 C 167 82.63 1471 reject_low 27 ALIGNMENT 0 Y12-10f23.q1k chr15 128 398 594618 594617 F 271 0.00 1471 reject_low 29 ALIGNMENT 0 Y12-10f23.q1k chr15 128 288 594817 594816 F 161 0.00 1471 reject_low 4 ALIGNMENT 176 Y12-10f23.q1k chr04 293 506 802900 803113 F 214 96.73 1471 reject_low 16 ALIGNMENT 150 Y12-10f23.q1k chr13 506 293 372814 373033 C 214 92.99 1471 reject_low 23 ALIGNMENT 47 Y12-10f23.q1k chr03 120 189 168993 169063 F 70 90.00 1471 reject_low 1 ALIGNMENT 181 Y12-10f23.q1k chr07 506 291 823098 823313 C 216 97.22 1471 reject_low 5 ALIGNMENT 153 Y12-10f23.q1k chr10 293 506 483549 483768 F 214 93.46 1471 reject_low 21 ALIGNMENT 180 Y12-10f23.q1k chr07 292 506 535214 535428 F 215 97.21 1471 reject_low 8 ALIGNMENT 0 Y12-10f23.q1k chr04 128 292 802900 802899 F 165 0.00 1471 reject_low 16 ALIGNMENT 0 Y12-10f23.q1k chr03 190 466 169063 169062 F 277 0.00 1471 reject_low 1 ALIGNMENT 0 Y12-10f23.q1k chr07 128 291 401961 401960 F 164 0.00 1471 reject_low 14 ALIGNMENT 179 Y12-10f23.q1k chr13 506 293 357122 357335 C 214 97.20 1471 reject_low 12 ALIGNMENT 0 Y12-10f23.q1k chr16 289 128 810562 810561 C 162 0.00 1471 reject_low 28 ALIGNMENT 0 Y12-10f23.q1k chr07 292 128 817730 817729 C 165 0.00 1471 reject_low 10 ALIGNMENT 47 Y12-10f23.q1k chr15 399 506 594618 594725 F 108 85.19 1471 reject_low 29 ALIGNMENT 28 Y12-10f23.q1k chr16 450 410 850353 850392 C 41 95.12 1471 reject_low 31 ALIGNMENT 0 Y12-10f23.q1k chr13 292 128 373034 373033 C 165 0.00 1471 reject_low 23 ALIGNMENT 0 Y12-10f23.q1k chr03 128 291 151517 151516 F 164 0.00 1471 reject_low 17 ALIGNMENT 0 Y12-10f23.q1k chr03 291 128 143079 143078 C 164 0.00 1471 reject_low 18 ALIGNMENT 0 Y12-10f23.q1k chr11 285 128 458122 458121 C 158 0.00 1471 reject_low 2 ALIGNMENT 175 Y12-10f23.q1k chr03 292 506 151517 151730 F 215 96.74 1471 reject_low 17 ALIGNMENT 0 Y12-10f23.q1k chr08 292 128 116748 116747 C 165 0.00 1471 reject_low 6 ALIGNMENT 0 Y12-10f23.q1k chr07 290 128 823314 823313 C 163 0.00 1471 reject_low 5 ALIGNMENT 150 Y12-10f23.q1k chr16 293 506 849999 850218 F 214 92.99 1471 reject_low 24 ALIGNMENT 0 Y12-10f23.q1k chr13 292 128 362918 362917 C 165 0.00 1471 reject_low 13 ALIGNMENT 0 Y12-10f23.q1k chr11 292 128 517427 517426 C 165 0.00 1471 reject_low 11 ALIGNMENT 150 Y12-10f23.q1k chr16 506 293 850743 850962 C 214 92.99 1471 reject_low 25 ALIGNMENT 182 Y12-10f23.q1k chr11 506 286 457901 458121 C 221 96.83 1471 reject_low 2 ALIGNMENT 0 Y12-10f23.q1k chr13 292 128 357336 357335 C 165 0.00 1471 reject_low 12 ALIGNMENT 180 Y12-10f23.q1k chr02 292 506 221039 221253 F 215 97.21 1471 reject_low 7 ALIGNMENT 0 Y12-10f23.q1k chr16 128 292 849999 849998 F 165 0.00 1471 reject_low 24 ALIGNMENT 0 Y12-10f23.q1k chr15 293 466 227139 227138 F 174 0.00 1471 accept 0 ALIGNMENT 0 Y12-10f23.q1k chr03 466 451 168772 168771 C 16 0.00 1471 reject_low 27 ALIGNMENT 151 Y12-10f23.q1k chr16 292 506 844407 844627 F 215 93.02 1471 reject_low 22 ALIGNMENT 153 Y12-10f23.q1k chr07 293 506 535764 535983 F 214 93.46 1471 reject_low 19 ALIGNMENT 182 Y12-10f23.q1k chr08 506 293 116534 116747 C 214 97.66 1471 reject_low 6 ALIGNMENT 0 Y12-10f23.q1k chr07 128 292 535764 535763 F 165 0.00 1471 reject_low 19 ALIGNMENT 182 Y12-10f23.q1k chr15 37 292 226883 227139 F 256 91.41 1471 accept 0 ALIGNMENT 66 Y12-10f23.q1k chr16 450 290 810401 810561 C 161 83.23 1471 reject_low 28 ALIGNMENT 179 Y12-10f23.q1k chr13 286 506 184163 184383 F 221 96.38 1471 reject_low 3 ALIGNMENT 182 Y12-10f23.q1k chr15 289 506 594817 595034 F 218 97.25 1471 reject_low 4 ALIGNMENT 179 Y12-10f23.q1k chr02 293 506 226624 226837 F 214 97.20 1471 reject_low 9 ALIGNMENT 150 Y12-10f23.q1k chr16 506 293 856331 856550 C 214 92.99 1471 reject_low 26 ALIGNMENT 0 Y12-10f23.q1k chr10 128 292 483549 483548 F 165 0.00 1471 reject_low 21 ALIGNMENT 176 Y12-10f23.q1k chr03 506 293 124249 124462 C 214 96.73 1471 reject_low 15 ALIGNMENT 0 Y12-10f23.q1k chr03 292 128 124463 124462 C 165 0.00 1471 reject_low 15 ALIGNMENT 916 Y12-10f23.p1k chr15 1133 28 229579 230679 C 1106 95.57 1284 accept 0 ALIGNMENT 0 Y12-10f23.q1k chr07 128 291 535214 535213 F 164 0.00 1471 reject_low 8 ALIGNMENT 0 Y12-10f23.q1k chr16 466 451 810402 810401 C 16 0.00 1471 reject_low 28 ALIGNMENT 153 Y12-10f23.q1k chr10 293 506 472377 472596 F 214 93.46 1471 reject_low 20 ALIGNMENT 0 Y12-10f23.q1k chr16 128 291 844407 844406 F 164 0.00 1471 reject_low 22 ALIGNMENT 0 Y12-10f23.q1k chr02 128 291 221039 221038 F 164 0.00 1471 reject_low 7 ALIGNMENT 0 Y12-10f23.q1k chr03 128 343 149531 149530 F 216 0.00 1471 reject_low 30 ALIGNMENT 39 Y12-10f23.q1k chr03 344 460 149531 149646 F 117 82.05 1471 reject_low 30 ALIGNMENT 1023 Y12-10f24.p1k chr15 19 1237 381755 382993 F 1219 95.82 1287 reject_bad_break 0 ALIGNMENT 0 Y12-10f24.q1k chr15 503 383 385218 385207 C 121 0.00 1278 reject_bad_break 0 ALIGNMENT 380 Y12-10f24.q1k chr15 976 504 384748 385217 C 473 94.08 1278 reject_bad_break 0 ALIGNMENT 297 Y12-10f24.q1k chr15 382 31 385208 385557 C 352 95.45 1278 reject_bad_break 0 ALIGNMENT 1054 Y12-10g01.p1k chr04 1231 16 361379 362603 C 1216 97.04 1367 accept 0 ALIGNMENT 81 Y12-10g02.p1k chr04 492 970 326889 327366 F 479 73.70 1410 accept 0 ALIGNMENT 1040 Y12-10g04.p1k chr11 16 1175 415610 416776 F 1160 97.76 1358 accept 0 ALIGNMENT 1003 Y12-10g04.q1k chr11 1199 42 419116 420285 C 1158 96.55 1400 accept 0 ALIGNMENT 933 Y12-10g05.p1k chr13 1110 17 693611 694715 C 1094 96.89 1340 accept 0 ALIGNMENT 863 Y12-10g05.q1k chr13 33 1052 690497 691516 F 1020 96.27 1370 accept 0 ALIGNMENT 869 Y12-10g06.q1k chr15 1064 33 317915 318936 C 1032 96.03 1426 accept 0 ALIGNMENT 949 Y12-10g06.p1k chr15 15 1120 314596 315712 F 1106 96.65 1419 accept 0 ALIGNMENT 977 Y12-10g07.p1k chr16 15 1178 536941 538119 F 1164 96.13 1377 accept 0 ALIGNMENT 922 Y12-10g07.q1k chr16 1066 37 539789 540825 C 1030 97.67 1360 accept 0 ALIGNMENT 951 Y12-10g08.p1k chr04 15 1097 749157 750256 F 1083 96.77 1379 accept 0 ALIGNMENT 997 Y12-10g08.q1k chr04 1164 35 750960 752101 C 1130 97.26 1393 accept 0 ALIGNMENT 413 Y12-10g09.p1k chr13 570 14 379286 379847 C 557 92.82 1462 accept_trans 0 ALIGNMENT 624 Y12-10g09.q1k chr13 30 750 368596 369313 F 721 97.09 1753 accept_trans 0 ALIGNMENT 903 Y12-10g10.p1k chr15 17 1086 747282 748356 F 1070 96.54 1437 accept 0 ALIGNMENT 872 Y12-10g10.q1k chr15 1071 25 750602 751641 C 1047 95.89 1390 accept 0 ALIGNMENT 573 Y12-10g11.q1k chr04 657 28 961284 961912 C 630 98.73 1428 accept 0 ALIGNMENT 872 Y12-10g11.p1k chr04 18 1073 957865 958915 F 1056 95.45 1440 accept 0 ALIGNMENT 504 Y12-10g13.p1k chr09 848 180 80212 80873 C 669 93.57 1533 accept 0 ALIGNMENT 397 Y12-10g13.q1k chr09 228 732 76605 77101 F 505 94.26 1549 accept 0 ALIGNMENT 888 Y12-10g16.q1k chr11 1154 37 266764 267891 C 1118 95.53 1406 accept 0 ALIGNMENT 1049 Y12-10g16.p1k chr11 22 1179 262814 263972 F 1158 97.24 1409 accept 0 ALIGNMENT 995 Y12-10g17.q1k chr14 1272 36 538842 540083 C 1237 95.15 1384 accept 0 ALIGNMENT 941 Y12-10g17.p1k chr14 30 1120 535908 537012 F 1091 96.43 1292 accept 0 ALIGNMENT 218 Y12-10g18.q1k chr05 1356 780 10084 10664 C 577 81.63 1640 accept 0 ALIGNMENT 858 Y12-10g19.p1k chr02 15 971 370459 371414 F 957 97.18 1372 accept 0 ALIGNMENT 1013 Y12-10g19.q1k chr02 1259 35 373379 374595 C 1225 95.43 1387 accept 0 ALIGNMENT 50 Y12-10g20.q1k vc_3 1 51 2692 2742 F 51 100.00 597 reject_vc 2 ALIGNMENT 50 Y12-10g20.q1k vc_5 1 51 2559 2609 F 51 100.00 597 reject_vc 4 ALIGNMENT 50 Y12-10g20.q1k vc_1 1 51 2692 2742 F 51 100.00 597 reject_vc 0 ALIGNMENT 50 Y12-10g20.q1k vc_7 51 1 2516 2566 C 51 100.00 597 reject_vc 5 ALIGNMENT 50 Y12-10g20.q1k vc_7 51 1 6360 6410 C 51 100.00 597 reject_vc 6 ALIGNMENT 50 Y12-10g20.q1k vc_4 51 1 5601 5651 C 51 100.00 597 reject_vc 3 ALIGNMENT 50 Y12-10g20.q1k vc_2 1 51 2325 2375 F 51 100.00 597 reject_vc 1 ALIGNMENT 851 Y12-10g21.p1k chr07 40 1073 959783 960822 F 1034 94.97 1282 accept 0 ALIGNMENT 65 Y12-10g21.q1k chr07 291 31 965208 965466 C 261 75.48 1414 accept 0 ALIGNMENT 20 Y12-10g22.p1k chr13 779 816 21960 21997 F 38 94.74 1330 reject_low 1 ALIGNMENT 0 Y12-10g22.p1k chr13 62 778 21960 21959 F 717 0.00 1330 reject_low 1 ALIGNMENT 1038 Y12-10g22.p1k chr12 1235 23 881503 882724 C 1213 96.78 1330 accept 0 ALIGNMENT 0 Y12-10g22.p1k chr13 817 913 21997 21996 F 97 0.00 1330 reject_low 1 ALIGNMENT 907 Y12-10g22.q1k chr12 36 1111 877921 879001 F 1076 95.35 1335 accept 0 ALIGNMENT 755 Y12-10g23.q1k chr12 36 872 995140 995976 F 837 97.73 1312 accept 0 ALIGNMENT 1062 Y12-10g23.p1k chr12 1223 17 998887 1000100 C 1207 96.69 1254 accept 0 ALIGNMENT 978 Y12-10g24.q1k chr12 1210 39 457014 458199 C 1172 95.14 1277 reject_low 1 ALIGNMENT 1043 Y12-10g24.p1k chr12 16 1233 451734 452970 F 1218 96.06 1290 reject_low 1 ALIGNMENT 986 Y12-10g24.q1k chr12 1246 39 466115 467336 C 1208 94.54 1277 accept 0 ALIGNMENT 0 Y12-10g24.p1k chr12 856 878 490543 490542 F 23 0.00 1290 reject_low 2 ALIGNMENT 761 Y12-10g24.p1k chr12 66 855 489754 490543 F 790 98.99 1290 reject_low 2 ALIGNMENT 1043 Y12-10g24.p1k chr12 16 1233 460871 462107 F 1218 96.06 1290 accept 0 ALIGNMENT 1006 Y12-10h01.p1k chr11 12 1203 41712 42916 F 1192 96.81 1374 accept 0 ALIGNMENT 522 Y12-10h02.p1k chr11 766 20 22110 22848 C 747 91.16 1399 accept 0 ALIGNMENT 786 Y12-10h03.p1k chr11 16 973 559988 560942 F 958 95.72 1459 accept 0 ALIGNMENT 680 Y12-10h03.q1k chr11 809 31 564601 565375 C 779 97.30 1548 accept 0 ALIGNMENT 950 Y12-10h04.p1k chr12 1166 16 640810 641965 C 1151 95.83 1417 accept 0 ALIGNMENT 938 Y12-10h04.q1k chr12 31 1041 635608 636620 F 1011 98.42 1369 accept 0 ALIGNMENT 829 Y12-10h05.q1k chr12 989 28 228840 229800 C 962 96.47 1421 accept 0 ALIGNMENT 1020 Y12-10h05.p1k chr12 14 1197 224402 225601 F 1184 96.62 1379 accept 0 ALIGNMENT 993 Y12-10h06.q1k chr16 27 1289 408064 409339 F 1263 94.06 1381 accept_chi 1 ALIGNMENT 1026 Y12-10h06.p1k chr13 1225 18 575075 576289 C 1208 95.12 1401 accept_chi 0 ALIGNMENT 898 Y12-10h07.q1k chr04 1072 35 594024 595061 C 1038 96.15 1403 accept 0 ALIGNMENT 964 Y12-10h07.p1k chr04 16 1246 589324 590572 F 1231 94.23 1416 accept 0 ALIGNMENT 932 Y12-10h08.p1k chr12 13 1087 493228 494321 F 1075 96.65 1429 accept 0 ALIGNMENT 691 Y12-10h08.q1k chr12 796 32 497961 498726 C 765 98.04 1387 accept 0 ALIGNMENT 883 Y12-10h09.p1k chr15 15 1091 73732 74804 F 1077 95.54 1492 accept 0 ALIGNMENT 656 Y12-10h09.q1k chr15 864 32 77081 77908 C 833 94.60 1427 accept 0 ALIGNMENT 458 Y12-10h10.q1k chr11 33 587 619790 620338 F 555 96.76 1529 accept 0 ALIGNMENT 896 Y12-10h10.p1k chr11 1137 17 622875 623987 C 1121 96.07 1439 accept 0 ALIGNMENT 915 Y12-10h11.q1k chr09 1094 35 409519 410592 C 1060 96.60 1382 accept 0 ALIGNMENT 986 Y12-10h11.p1k chr09 19 1118 404706 405813 F 1100 97.18 1496 accept 0 ALIGNMENT 878 Y12-10h12.p1k chr06 1010 17 190197 191205 C 994 97.59 1367 accept 0 ALIGNMENT 335 Y12-10h12.q1k chr06 27 429 187268 187669 F 403 95.53 1406 accept 0 ALIGNMENT 986 Y12-10h13.q1k chr16 36 1239 326718 327930 F 1204 95.43 1415 accept 0 ALIGNMENT 973 Y12-10h13.p1k chr16 1160 22 331204 332351 C 1139 96.31 1333 accept 0 ALIGNMENT 0 Y12-10h14.p1k chr01 495 404 107828 107919 C 92 0.00 1452 reject_low 1 ALIGNMENT 909 Y12-10h14.p1k chr15 16 1068 916248 917296 F 1053 96.49 1452 accept 0 ALIGNMENT 24 Y12-10h14.p1k chr01 542 496 107781 107827 C 47 85.11 1452 reject_low 1 ALIGNMENT 880 Y12-10h14.q1k chr15 1019 35 919808 920787 C 985 97.16 1390 accept 0 ALIGNMENT 97 Y12-10h14.p1k chr01 403 32 107920 108291 C 372 76.34 1452 reject_low 1 ALIGNMENT 0 Y12-10h14.p1k chr01 827 543 107782 107781 C 285 0.00 1452 reject_low 1 ALIGNMENT 969 Y12-10h15.p1k chr12 17 1201 607257 608446 F 1185 95.27 1391 accept 0 ALIGNMENT 57 Y12-10h15.p1k chr14 418 357 144083 144144 C 62 100.00 1391 reject_low 1 ALIGNMENT 0 Y12-10h15.p1k chr14 356 62 144145 144144 C 295 0.00 1391 reject_low 1 ALIGNMENT 869 Y12-10h15.q1k chr12 1055 36 611066 612092 C 1020 95.59 1364 accept 0 ALIGNMENT 0 Y12-10h15.p1k chr14 847 419 144084 144083 C 429 0.00 1391 reject_low 1 ALIGNMENT 598 Y12-10h16.q1k chr02 718 32 107915 108602 C 687 96.36 1376 accept 0 ALIGNMENT 847 Y12-10h16.p1k chr02 18 1107 103064 104149 F 1090 94.95 1417 accept 0 ALIGNMENT 1020 Y12-10h18.p1k chr08 22 1174 197711 198872 F 1153 97.14 1392 accept 0 ALIGNMENT 728 Y12-10h18.q1k chr08 904 36 201514 202389 C 869 95.97 1293 accept 0 ALIGNMENT 887 Y12-10h19.q1k chr13 39 1073 881 1917 F 1035 95.65 1326 reject_low 30 ALIGNMENT 49 Y12-10h19.p1k chr13 719 664 3708 3763 C 56 96.43 1337 reject_low 30 ALIGNMENT 66 Y12-10h19.q1k chr09 824 1072 2118 2367 F 249 76.71 1326 reject_low 153 ALIGNMENT 112 Y12-10h19.q1k chr13 827 1072 1814 2060 F 246 82.93 1326 reject_low 119 ALIGNMENT 881 Y12-10h19.q1k chr10 39 1073 883 1919 F 1035 95.46 1326 ambiguous_tel 2 ALIGNMENT 121 Y12-10h19.q1k chr02 824 1073 2098 2348 F 250 84.00 1326 reject_low 106 ALIGNMENT 122 Y12-10h19.q1k chr08 1073 827 560483 560730 C 247 84.21 1326 reject_low 105 ALIGNMENT 0 Y12-10h19.q1k chr12 895 62 1076690 1076689 C 834 0.00 1326 reject_low 45 ALIGNMENT 52 Y12-10h19.p1k chr02 719 664 4033 4088 C 56 98.21 1337 reject_low 25 ALIGNMENT 62 Y12-10h19.q1k chr08 1033 896 560704 560841 C 138 82.61 1326 reject_low 167 ALIGNMENT 0 Y12-10h19.q1k chr07 826 62 1089248 1089247 C 765 0.00 1326 reject_low 118 ALIGNMENT 33 Y12-10h19.q1k chr12 888 823 1069602 1069667 C 66 84.85 1326 reject_low 54 ALIGNMENT 0 Y12-10h19.q1k chr09 62 818 1897 1896 F 757 0.00 1326 reject_low 113 ALIGNMENT 60 Y12-10h19.q1k chr02 824 996 2242 2414 F 173 79.77 1326 reject_low 177 ALIGNMENT 63 Y12-10h19.q1k chr12 1073 860 1076475 1076689 C 214 77.57 1326 reject_low 43 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1076402 1076401 C 762 0.00 1326 reject_low 48 ALIGNMENT 0 Y12-10h19.q1k chr14 62 822 1825 1824 F 761 0.00 1326 reject_low 182 ALIGNMENT 85 Y12-10h19.q1k chr05 860 1068 1470 1679 F 209 81.34 1326 reject_low 39 ALIGNMENT 0 Y12-10h19.q1k chr04 823 62 1530309 1530308 C 762 0.00 1326 reject_low 108 ALIGNMENT 40 Y12-10h19.q1k chr05 823 980 1901 2058 F 158 76.58 1326 reject_low 53 ALIGNMENT 907 Y12-10h19.q1k chr12 39 1069 897 1929 F 1031 96.41 1326 reject_low 26 ALIGNMENT 0 Y12-10h19.q1k chr13 62 859 1667 1666 F 798 0.00 1326 reject_low 160 ALIGNMENT 0 Y12-10h19.p1k chr12 309 323 1067129 1067124 F 15 0.00 1337 ambiguous_tel 0 ALIGNMENT 65 Y12-10h19.q1k chr09 896 1086 1686 1878 F 191 79.06 1326 reject_low 142 ALIGNMENT 60 Y12-10h19.q1k chr12 824 935 2079 2190 F 112 86.61 1326 reject_low 254 ALIGNMENT 62 Y12-10h19.q1k chr09 824 965 2082 2223 F 142 83.10 1326 reject_low 234 ALIGNMENT 0 Y12-10h19.q1k chr08 62 859 1651 1650 F 798 0.00 1326 reject_low 99 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1506 1505 F 762 0.00 1326 reject_low 37 ALIGNMENT 29 Y12-10h19.p1k chr08 610 642 558720 558752 F 33 96.97 1337 reject_low 29 ALIGNMENT 55 Y12-10h19.q1k chr10 824 939 1849 1964 F 116 84.48 1326 reject_low 188 ALIGNMENT 0 Y12-10h19.q1k chr15 823 62 1089618 1089617 C 762 0.00 1326 reject_low 56 ALIGNMENT 82 Y12-10h19.q1k chr06 944 1073 905 1035 F 130 88.46 1326 reject_low 144 ALIGNMENT 195 Y12-10h19.q1k chr09 824 1069 1794 2040 F 246 94.31 1326 reject_low 60 ALIGNMENT 101 Y12-10h19.q1k chr13 835 1032 1894 2091 F 198 84.85 1326 reject_low 135 ALIGNMENT 130 Y12-10h19.q1k chr05 824 1033 1722 1931 F 210 88.57 1326 reject_low 35 ALIGNMENT 22 Y12-10h19.q1k chr09 975 1033 2245 2303 F 59 79.66 1326 reject_low 234 ALIGNMENT 53 Y12-10h19.p1k chr16 441 497 944168 944224 F 57 98.25 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 139 Y12-10h19.q1k chr10 824 1033 1741 1950 F 210 90.00 1326 reject_low 94 ALIGNMENT 886 Y12-10h19.q1k chr05 39 1033 684 1679 F 995 96.78 1326 reject_low 10 ALIGNMENT 0 Y12-10h19.q1k chr16 822 62 946136 946135 C 761 0.00 1326 reject_low 231 ALIGNMENT 62 Y12-10h19.q1k chr05 835 1072 1805 2043 F 238 76.47 1326 reject_low 44 ALIGNMENT 0 Y12-10h19.q1k chr12 62 826 7473 7472 F 765 0.00 1326 reject_low 247 ALIGNMENT 62 Y12-10h19.q1k chr12 896 1033 7326 7463 F 138 82.61 1326 reject_low 261 ALIGNMENT 0 Y12-10h19.p1k chr02 440 62 4211 4210 C 379 0.00 1337 reject_low 25 ALIGNMENT 60 Y12-10h19.q1k chr12 824 935 7614 7725 F 112 86.61 1326 reject_low 255 ALIGNMENT 0 Y12-10h19.q1k chr08 62 823 1759 1758 F 762 0.00 1326 reject_low 195 ALIGNMENT 0 Y12-10h19.q1k chr04 859 62 1530489 1530488 C 798 0.00 1326 reject_low 156 ALIGNMENT 137 Y12-10h19.q1k chr02 835 1072 2145 2383 F 238 86.97 1326 reject_low 92 ALIGNMENT 146 Y12-10h19.q1k chr12 827 1073 7437 7684 F 247 87.45 1326 reject_low 239 ALIGNMENT 53 Y12-10h19.p1k chr12 497 441 3953 4009 C 57 98.25 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 101 Y12-10h19.q1k chr02 823 1086 1845 2110 F 264 80.68 1326 reject_low 97 ALIGNMENT 176 Y12-10h19.q1k chr02 835 1072 1677 1915 F 238 92.44 1326 reject_low 66 ALIGNMENT 0 Y12-10h19.q1k chr09 62 822 2189 2188 F 761 0.00 1326 reject_low 194 ALIGNMENT 47 Y12-10h19.q1k chr08 824 965 1759 1900 F 142 79.58 1326 reject_low 195 ALIGNMENT 0 Y12-10h19.q1k chr09 966 974 2224 2244 F 9 0.00 1326 reject_low 234 ALIGNMENT 130 Y12-10h19.q1k chr12 824 1033 7506 7715 F 210 88.57 1326 reject_low 244 ALIGNMENT 139 Y12-10h19.q1k chr02 824 1086 1918 2182 F 263 85.55 1326 reject_low 67 ALIGNMENT 147 Y12-10h19.q1k chr16 1073 835 946064 946303 C 239 88.28 1326 reject_low 221 ALIGNMENT 0 Y12-10h19.q1k chr10 62 823 1777 1776 F 762 0.00 1326 reject_low 71 ALIGNMENT 68 Y12-10h19.q1k chr05 896 1033 1470 1607 F 138 84.06 1326 reject_low 41 ALIGNMENT 127 Y12-10h19.q1k chr15 1033 824 1089264 1089473 C 210 88.10 1326 reject_low 110 ALIGNMENT 29 Y12-10h19.p1k chr16 610 642 944267 944299 F 33 96.97 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 0 Y12-10h19.q1k chr05 826 62 575207 575206 C 765 0.00 1326 reject_low 72 ALIGNMENT 0 Y12-10h19.q1k chr15 823 62 1089366 1089365 C 762 0.00 1326 reject_low 185 ALIGNMENT 29 Y12-10h19.p1k chr02 642 610 4079 4111 C 33 96.97 1337 reject_low 25 ALIGNMENT 0 Y12-10h19.q1k chr13 62 823 1955 1954 F 762 0.00 1326 reject_low 174 ALIGNMENT 0 Y12-10h19.q1k chr12 826 62 1069880 1069879 C 765 0.00 1326 reject_low 20 ALIGNMENT 890 Y12-10h19.q1k chr07 1073 39 1089144 1090180 C 1035 95.75 1326 reject_low 7 ALIGNMENT 0 Y12-10h19.q1k chr12 62 834 7661 7660 F 773 0.00 1326 reject_low 259 ALIGNMENT 0 Y12-10h19.q1k chr15 823 62 1089474 1089473 C 762 0.00 1326 reject_low 110 ALIGNMENT 52 Y12-10h19.p1k chr16 664 719 944290 944345 F 56 98.21 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 0 Y12-10h19.p1k chr05 273 62 4590 4589 C 212 0.00 1337 reject_low 39,40,41,44,46,53 ALIGNMENT 0 Y12-10h19.p1k chr13 609 590 3787 3782 C 20 0.00 1337 reject_low 30 ALIGNMENT 114 Y12-10h19.q1k chr09 835 1073 1949 2188 F 239 83.68 1326 reject_low 115 ALIGNMENT 0 Y12-10h19.q1k chr16 62 895 1483 1482 F 834 0.00 1326 reject_low 171 ALIGNMENT 0 Y12-10h19.q1k chr16 62 823 1519 1518 F 762 0.00 1326 reject_low 65 ALIGNMENT 0 Y12-10h19.q1k chr07 823 62 1089359 1089358 C 762 0.00 1326 reject_low 62 ALIGNMENT 46 Y12-10h19.q1k chr12 924 835 1076265 1076354 C 90 85.56 1326 reject_low 52 ALIGNMENT 0 Y12-10h19.q1k chr15 834 62 1089319 1089318 C 773 0.00 1326 reject_low 202 ALIGNMENT 0 Y12-10h19.q1k chr07 826 62 1089284 1089283 C 765 0.00 1326 reject_low 73 ALIGNMENT 0 Y12-10h19.q1k chr16 859 62 946495 946494 C 798 0.00 1326 reject_low 222 ALIGNMENT 0 Y12-10h19.q1k chr10 62 823 1813 1812 F 762 0.00 1326 reject_low 151 ALIGNMENT 127 Y12-10h19.q1k chr12 1033 824 1069637 1069846 C 210 88.10 1326 reject_low 18 ALIGNMENT 86 Y12-10h19.q1k chr02 860 1069 1486 1696 F 210 81.43 1326 reject_low 148 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 2046 2045 F 762 0.00 1326 reject_low 125 ALIGNMENT 33 Y12-10h19.q1k chr05 888 823 574893 574958 C 66 84.85 1326 reject_low 208 ALIGNMENT 56 Y12-10h19.q1k chr12 823 996 2042 2215 F 174 78.74 1326 reject_low 256 ALIGNMENT 0 Y12-10h19.q1k chr09 62 859 1686 1685 F 798 0.00 1326 reject_low 145 ALIGNMENT 0 Y12-10h19.q1k chr10 62 834 1932 1931 F 773 0.00 1326 reject_low 217 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 1827 1826 F 762 0.00 1326 reject_low 237 ALIGNMENT 138 Y12-10h19.q1k chr09 835 1033 2021 2219 F 199 90.95 1326 reject_low 96 ALIGNMENT 0 Y12-10h19.q1k chr14 62 822 1933 1932 F 761 0.00 1326 reject_low 211 ALIGNMENT 0 Y12-10h19.q1k chr06 62 822 1072 1071 F 761 0.00 1326 reject_low 193 ALIGNMENT 0 Y12-10h19.p1k chr08 663 643 3620 3609 C 21 0.00 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.q1k chr07 823 62 1089215 1089214 C 762 0.00 1326 reject_low 101 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1686 1685 F 762 0.00 1326 reject_low 34 ALIGNMENT 112 Y12-10h19.q1k chr09 824 1033 1830 2039 F 210 85.71 1326 reject_low 124 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 2073 2072 F 773 0.00 1326 reject_low 111 ALIGNMENT 120 Y12-10h19.q1k chr02 824 1072 1738 1987 F 249 83.94 1326 reject_low 107 ALIGNMENT 146 Y12-10h19.q1k chr13 827 1073 1778 2025 F 247 87.45 1326 reject_low 74 ALIGNMENT 893 Y12-10h19.q1k chr04 1073 39 1530238 1531274 C 1035 95.85 1326 ambiguous_tel 3 ALIGNMENT 0 Y12-10h19.p1k chr05 889 309 4556 4555 C 581 0.00 1337 reject_low 31,32,33,34,35,36,37,38,39,40,41,44,46,53 ALIGNMENT 33 Y12-10h19.q1k chr12 888 823 1076265 1076330 C 66 84.85 1326 reject_low 218 ALIGNMENT 136 Y12-10h19.q1k chr02 824 1086 1990 2254 F 263 85.17 1326 reject_low 68 ALIGNMENT 152 Y12-10h19.q1k chr12 1123 824 1069686 1069990 C 300 85.00 1326 reject_low 12 ALIGNMENT 0 Y12-10h19.q1k chr02 62 859 1486 1485 F 798 0.00 1326 reject_low 148 ALIGNMENT 130 Y12-10h19.q1k chr08 1086 824 560541 560805 C 263 84.41 1326 reject_low 69 ALIGNMENT 0 Y12-10h19.q1k chr06 62 943 905 904 F 882 0.00 1326 reject_low 144 ALIGNMENT 0 Y12-10h19.q1k chr08 62 895 1651 1650 F 834 0.00 1326 reject_low 131 ALIGNMENT 53 Y12-10h19.q1k chr04 996 823 1530064 1530237 C 174 78.16 1326 reject_low 191 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1650 1649 F 762 0.00 1326 reject_low 32 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1076654 1076653 C 762 0.00 1326 reject_low 13 ALIGNMENT 151 Y12-10h19.q1k chr05 1086 824 575017 575281 C 263 87.07 1326 reject_low 61 ALIGNMENT 0 Y12-10h19.p1k chr02 663 643 4089 4078 C 21 0.00 1337 reject_low 25 ALIGNMENT 0 Y12-10h19.q1k chr09 62 834 2021 2020 F 773 0.00 1326 reject_low 96 ALIGNMENT 0 Y12-10h19.q1k chr13 62 822 1918 1917 F 761 0.00 1326 reject_low 181 ALIGNMENT 0 Y12-10h19.q1k chr02 62 822 1881 1880 F 761 0.00 1326 reject_low 126 ALIGNMENT 0 Y12-10h19.p1k chr06 663 643 2925 2914 C 21 0.00 1337 reject_low 27 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946351 946350 C 762 0.00 1326 reject_low 219 ALIGNMENT 23 Y12-10h19.q1k chr10 835 865 1932 1962 F 31 93.55 1326 reject_low 217 ALIGNMENT 57 Y12-10h19.q1k chr12 935 824 1069627 1069738 C 112 85.71 1326 reject_low 47 ALIGNMENT 88 Y12-10h19.q1k chr09 860 1071 1686 1898 F 212 81.60 1326 reject_low 145 ALIGNMENT 46 Y12-10h19.q1k chr05 924 835 574893 574982 C 90 85.56 1326 reject_low 198 ALIGNMENT 0 Y12-10h19.q1k chr12 859 62 1076690 1076689 C 798 0.00 1326 reject_low 43 ALIGNMENT 136 Y12-10h19.q1k chr12 1073 824 1069704 1069954 C 250 86.00 1326 reject_low 16 ALIGNMENT 0 Y12-10h19.q1k chr05 823 62 575282 575281 C 762 0.00 1326 reject_low 61 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 7398 7397 F 762 0.00 1326 reject_low 241 ALIGNMENT 0 Y12-10h19.q1k chr05 823 62 575246 575245 C 762 0.00 1326 reject_low 86 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946423 946422 C 762 0.00 1326 reject_low 227 ALIGNMENT 136 Y12-10h19.q1k chr12 1073 824 1076367 1076617 C 250 86.00 1326 reject_low 17 ALIGNMENT 151 Y12-10h19.q1k chr16 824 1086 1519 1783 F 263 87.07 1326 reject_low 65 ALIGNMENT 0 Y12-10h19.q1k chr12 62 859 1683 1682 F 798 0.00 1326 reject_low 249 ALIGNMENT 24 Y12-10h19.p1k chr12 589 560 9442 9471 C 30 93.33 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 0 Y12-10h19.q1k chr05 895 62 575318 575317 C 834 0.00 1326 reject_low 165 ALIGNMENT 106 Y12-10h19.q1k chr16 1073 824 946172 946422 C 250 82.00 1326 reject_low 227 ALIGNMENT 0 Y12-10h19.q1k chr08 62 834 1806 1805 F 773 0.00 1326 reject_low 196 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 7614 7613 F 762 0.00 1326 reject_low 255 ALIGNMENT 0 Y12-10h19.q1k chr14 62 823 1862 1861 F 762 0.00 1326 reject_low 175 ALIGNMENT 63 Y12-10h19.q1k chr04 1073 860 1530274 1530488 C 214 77.57 1326 reject_low 156 ALIGNMENT 130 Y12-10h19.q1k chr12 824 1033 1971 2180 F 210 88.57 1326 reject_low 243 ALIGNMENT 0 Y12-10h19.q1k chr04 822 62 1530238 1530237 C 761 0.00 1326 reject_low 191 ALIGNMENT 79 Y12-10h19.q1k chr05 824 1033 1830 2039 F 210 80.48 1326 reject_low 40 ALIGNMENT 0 Y12-10h19.q1k chr04 834 62 1530262 1530261 C 773 0.00 1326 reject_low 138 ALIGNMENT 57 Y12-10h19.q1k chr15 935 824 1089254 1089365 C 112 85.71 1326 reject_low 185 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946459 946458 C 762 0.00 1326 reject_low 225 ALIGNMENT 0 Y12-10h19.q1k chr06 62 895 893 892 F 834 0.00 1326 reject_low 127 ALIGNMENT 991 Y12-10h19.p1k chr14 1126 26 3664 4773 C 1101 97.09 1337 reject_low 9 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 2079 2078 F 762 0.00 1326 reject_low 254 ALIGNMENT 53 Y12-10h19.p1k chr13 497 441 3829 3885 C 57 98.25 1337 reject_low 30 ALIGNMENT 0 Y12-10h19.p1k chr12 440 62 9545 9544 C 379 0.00 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1578 1577 F 762 0.00 1326 reject_low 31 ALIGNMENT 151 Y12-10h19.q1k chr12 824 1086 7362 7626 F 263 87.07 1326 reject_low 236 ALIGNMENT 29 Y12-10h19.p1k chr06 642 610 2915 2947 C 33 96.97 1337 reject_low 27 ALIGNMENT 146 Y12-10h19.q1k chr05 1073 827 574959 575206 C 247 87.45 1326 reject_low 72 ALIGNMENT 129 Y12-10h19.q1k chr05 824 1072 1686 1935 F 249 85.14 1326 reject_low 34 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 1755 1754 F 762 0.00 1326 reject_low 248 ALIGNMENT 0 Y12-10h19.p1k chr12 559 498 9472 9487 C 62 0.00 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 53 Y12-10h19.q1k chr15 996 823 1089229 1089402 C 174 78.16 1326 reject_low 192 ALIGNMENT 0 Y12-10h19.q1k chr02 62 895 1486 1485 F 834 0.00 1326 reject_low 152 ALIGNMENT 0 Y12-10h19.q1k chr08 62 823 1687 1686 F 762 0.00 1326 reject_low 109 ALIGNMENT 65 Y12-10h19.q1k chr02 896 1073 1486 1664 F 178 79.78 1326 reject_low 152 ALIGNMENT 0 Y12-10h19.q1k chr04 823 62 1530201 1530200 C 762 0.00 1326 reject_low 184 ALIGNMENT 0 Y12-10h19.q1k chr04 823 62 1530453 1530452 C 762 0.00 1326 reject_low 55 ALIGNMENT 0 Y12-10h19.q1k chr15 859 62 1089654 1089653 C 798 0.00 1326 reject_low 162 ALIGNMENT 45 Y12-10h19.q1k chr09 927 1086 1681 1842 F 160 76.88 1326 reject_low 154 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 2082 2081 F 762 0.00 1326 reject_low 234 ALIGNMENT 991 Y12-10h19.p1k chr07 22 1126 1086190 1087304 F 1105 97.01 1337 reject_low 7 ALIGNMENT 33 Y12-10h19.q1k chr07 888 823 1088970 1089035 C 66 84.85 1326 reject_low 209 ALIGNMENT 101 Y12-10h19.q1k chr06 896 1073 893 1071 F 178 86.52 1326 reject_low 127 ALIGNMENT 0 Y12-10h19.q1k chr16 62 826 1630 1629 F 765 0.00 1326 reject_low 121 ALIGNMENT 113 Y12-10h19.q1k chr09 824 1007 2046 2229 F 184 88.59 1326 reject_low 125 ALIGNMENT 0 Y12-10h19.q1k chr14 62 823 1610 1609 F 762 0.00 1326 reject_low 64 ALIGNMENT 46 Y12-10h19.q1k chr07 924 835 1088970 1089059 C 90 85.56 1326 reject_low 199 ALIGNMENT 33 Y12-10h19.q1k chr16 823 888 1842 1907 F 66 84.85 1326 reject_low 213 ALIGNMENT 136 Y12-10h19.q1k chr16 824 1073 1555 1805 F 250 86.00 1326 reject_low 91 ALIGNMENT 130 Y12-10h19.q1k chr14 824 1033 1754 1963 F 210 88.57 1326 reject_low 103 ALIGNMENT 0 Y12-10h19.q1k chr12 822 62 1076331 1076330 C 761 0.00 1326 reject_low 218 ALIGNMENT 98 Y12-10h19.q1k chr15 1032 835 1089229 1089426 C 198 84.34 1326 reject_low 139 ALIGNMENT 0 Y12-10h19.p1k chr16 643 663 944300 944289 F 21 0.00 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 136 Y12-10h19.q1k chr05 1073 824 574995 575245 C 250 86.00 1326 reject_low 86 ALIGNMENT 0 Y12-10h19.q1k chr10 62 895 1669 1668 F 834 0.00 1326 reject_low 143 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 2026 2025 F 762 0.00 1326 reject_low 81 ALIGNMENT 0 Y12-10h19.p1k chr06 440 62 3047 3046 C 379 0.00 1337 reject_low 27 ALIGNMENT 0 Y12-10h19.q1k chr05 834 62 575091 575090 C 773 0.00 1326 reject_low 133 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 1821 1820 F 773 0.00 1326 reject_low 130 ALIGNMENT 0 Y12-10h19.q1k chr16 62 822 1734 1733 F 761 0.00 1326 reject_low 183 ALIGNMENT 1006 Y12-10h19.p1k chr04 22 1126 1527284 1528398 F 1105 97.47 1337 ambiguous_tel 3 ALIGNMENT 101 Y12-10h19.q1k chr14 835 1032 1801 1998 F 198 84.85 1326 reject_low 136 ALIGNMENT 0 Y12-10h19.q1k chr12 62 822 7577 7576 F 761 0.00 1326 reject_low 257 ALIGNMENT 0 Y12-10h19.q1k chr16 62 822 1842 1841 F 761 0.00 1326 reject_low 213 ALIGNMENT 0 Y12-10h19.q1k chr06 62 834 976 975 F 773 0.00 1326 reject_low 235 ALIGNMENT 0 Y12-10h19.q1k chr07 822 62 1089036 1089035 C 761 0.00 1326 reject_low 209 ALIGNMENT 0 Y12-10h19.q1k chr14 62 823 1754 1753 F 762 0.00 1326 reject_low 103 ALIGNMENT 62 Y12-10h19.q1k chr16 896 1033 1483 1620 F 138 82.61 1326 reject_low 171 ALIGNMENT 1029 Y12-10h19.p1k chr10 1126 26 4035 5145 C 1101 98.27 1337 ambiguous_tel 2 ALIGNMENT 0 Y12-10h19.q1k chr04 895 62 1530489 1530488 C 834 0.00 1326 reject_low 164 ALIGNMENT 0 Y12-10h19.q1k chr14 62 823 1646 1645 F 762 0.00 1326 reject_low 89 ALIGNMENT 0 Y12-10h19.q1k chr04 823 62 1530417 1530416 C 762 0.00 1326 reject_low 85 ALIGNMENT 0 Y12-10h19.q1k chr06 62 823 1001 1000 F 762 0.00 1326 reject_low 150 ALIGNMENT 101 Y12-10h19.q1k chr12 860 1072 1683 1896 F 213 83.57 1326 reject_low 249 ALIGNMENT 112 Y12-10h19.q1k chr16 827 1072 1630 1876 F 246 82.93 1326 reject_low 121 ALIGNMENT 127 Y12-10h19.q1k chr12 824 1033 1719 1928 F 210 88.10 1326 reject_low 245 ALIGNMENT 0 Y12-10h19.q1k chr06 62 834 1048 1047 F 773 0.00 1326 reject_low 186 ALIGNMENT 24 Y12-10h19.p1k chr08 560 589 558694 558723 F 30 93.33 1337 reject_low 29 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 1971 1970 F 762 0.00 1326 reject_low 243 ALIGNMENT 32 Y12-10h19.q1k chr08 823 878 1866 1921 F 56 87.50 1326 reject_low 214 ALIGNMENT 31 Y12-10h19.q1k chr08 888 835 560417 560470 C 54 87.04 1326 reject_low 216 ALIGNMENT 0 Y12-10h19.q1k chr08 823 62 560554 560553 C 762 0.00 1326 reject_low 190 ALIGNMENT 0 Y12-10h19.q1k chr06 62 859 893 892 F 798 0.00 1326 reject_low 140 ALIGNMENT 0 Y12-10h19.q1k chr10 62 823 1705 1704 F 762 0.00 1326 reject_low 84 ALIGNMENT 0 Y12-10h19.p1k chr08 609 590 3643 3638 C 20 0.00 1337 reject_low 24 ALIGNMENT 63 Y12-10h19.q1k chr14 860 1073 1574 1788 F 214 77.57 1326 reject_low 161 ALIGNMENT 189 Y12-10h19.p1k chr05 217 26 4586 4777 C 192 100.00 1337 reject_low 10,31,32,33,34,35,36,37,38 ALIGNMENT 0 Y12-10h19.q1k chr05 822 62 575067 575066 C 761 0.00 1326 reject_low 179 ALIGNMENT 40 Y12-10h19.q1k chr08 924 835 560417 560506 C 90 83.33 1326 reject_low 206 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 2170 2169 F 762 0.00 1326 reject_low 82 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1069991 1069990 C 762 0.00 1326 reject_low 12 ALIGNMENT 0 Y12-10h19.q1k chr05 62 834 1877 1876 F 773 0.00 1326 reject_low 46 ALIGNMENT 56 Y12-10h19.q1k chr13 823 996 1918 2091 F 174 78.74 1326 reject_low 181 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 1866 1865 F 762 0.00 1326 reject_low 59 ALIGNMENT 62 Y12-10h19.q1k chr07 1033 896 1089257 1089394 C 138 82.61 1326 reject_low 166 ALIGNMENT 0 Y12-10h19.q1k chr12 62 826 1902 1901 F 765 0.00 1326 reject_low 238 ALIGNMENT 0 Y12-10h19.q1k chr05 826 62 575171 575170 C 765 0.00 1326 reject_low 117 ALIGNMENT 0 Y12-10h19.q1k chr13 62 823 1739 1738 F 762 0.00 1326 reject_low 88 ALIGNMENT 0 Y12-10h19.q1k chr05 834 62 574983 574982 C 773 0.00 1326 reject_low 198 ALIGNMENT 112 Y12-10h19.q1k chr07 1072 827 1089001 1089247 C 246 82.93 1326 reject_low 118 ALIGNMENT 56 Y12-10h19.q1k chr14 823 996 1825 1998 F 174 78.74 1326 reject_low 182 ALIGNMENT 29 Y12-10h19.p1k chr08 642 610 3610 3642 C 33 96.97 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.q1k chr12 62 834 7553 7552 F 773 0.00 1326 reject_low 251 ALIGNMENT 76 Y12-10h19.q1k chr06 967 1123 892 1053 F 157 84.08 1326 reject_low 58 ALIGNMENT 0 Y12-10h19.q1k chr10 62 859 1669 1668 F 798 0.00 1326 reject_low 146 ALIGNMENT 0 Y12-10h19.q1k chr08 834 62 560615 560614 C 773 0.00 1326 reject_low 129 ALIGNMENT 89 Y12-10h19.q1k chr06 860 1072 893 1106 F 213 81.69 1326 reject_low 140 ALIGNMENT 0 Y12-10h19.p1k chr12 62 273 1067094 1067093 F 212 0.00 1337 reject_low 42,43,45,47,48,49,50,51,52,54,218 ALIGNMENT 0 Y12-10h19.q1k chr08 823 62 560806 560805 C 762 0.00 1326 reject_low 69 ALIGNMENT 40 Y12-10h19.q1k chr02 835 924 2325 2414 F 90 83.33 1326 reject_low 205 ALIGNMENT 136 Y12-10h19.q1k chr15 1073 824 1089331 1089581 C 250 86.00 1326 reject_low 90 ALIGNMENT 62 Y12-10h19.q1k chr05 835 1001 1877 2043 F 167 80.24 1326 reject_low 46 ALIGNMENT 102 Y12-10h19.q1k chr02 823 1073 1881 2132 F 251 81.27 1326 reject_low 126 ALIGNMENT 0 Y12-10h19.q1k chr08 834 62 560507 560506 C 773 0.00 1326 reject_low 206 ALIGNMENT 0 Y12-10h19.q1k chr12 62 822 2150 2149 F 761 0.00 1326 reject_low 261 ALIGNMENT 46 Y12-10h19.q1k chr12 924 835 1069602 1069691 C 90 85.56 1326 reject_low 51 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 1791 1790 F 762 0.00 1326 reject_low 242 ALIGNMENT 112 Y12-10h19.q1k chr05 1072 827 574924 575170 C 246 82.93 1326 reject_low 117 ALIGNMENT 0 Y12-10h19.p1k chr12 559 498 3937 3952 C 62 0.00 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 62 Y12-10h19.q1k chr05 1033 896 575180 575317 C 138 82.61 1326 reject_low 165 ALIGNMENT 53 Y12-10h19.p1k chr02 497 441 4154 4210 C 57 98.25 1337 reject_low 25 ALIGNMENT 99 Y12-10h19.q1k chr02 835 1073 1821 2060 F 239 81.59 1326 reject_low 130 ALIGNMENT 886 Y12-10h19.q1k chr08 1086 39 560577 561627 C 1048 95.32 1326 reject_low 29 ALIGNMENT 0 Y12-10h19.q1k chr10 62 823 1741 1740 F 762 0.00 1326 reject_low 94 ALIGNMENT 0 Y12-10h19.q1k chr14 62 834 1801 1800 F 773 0.00 1326 reject_low 136 ALIGNMENT 890 Y12-10h19.q1k chr16 39 1073 697 1733 F 1035 95.75 1326 reject_low 8 ALIGNMENT 53 Y12-10h19.p1k chr06 497 441 2990 3046 C 57 98.25 1337 reject_low 27 ALIGNMENT 33 Y12-10h19.q1k chr16 888 823 945962 946027 C 66 84.85 1326 reject_low 233 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 2325 2324 F 773 0.00 1326 reject_low 205 ALIGNMENT 0 Y12-10h19.q1k chr12 822 62 1069668 1069667 C 761 0.00 1326 reject_low 54 ALIGNMENT 0 Y12-10h19.q1k chr16 62 823 1771 1770 F 762 0.00 1326 reject_low 176 ALIGNMENT 0 Y12-10h19.q1k chr08 895 62 560842 560841 C 834 0.00 1326 reject_low 167 ALIGNMENT 151 Y12-10h19.q1k chr07 1086 824 1089094 1089358 C 263 87.07 1326 reject_low 62 ALIGNMENT 69 Y12-10h19.q1k chr06 824 1072 1001 1250 F 249 77.11 1326 reject_low 150 ALIGNMENT 130 Y12-10h19.q1k chr05 1033 824 574928 575137 C 210 88.57 1326 reject_low 100 ALIGNMENT 0 Y12-10h19.q1k chr15 823 62 1089582 1089581 C 762 0.00 1326 reject_low 90 ALIGNMENT 0 Y12-10h19.q1k chr04 826 62 1530342 1530341 C 765 0.00 1326 reject_low 122 ALIGNMENT 890 Y12-10h19.q1k chr05 1073 39 575067 576103 C 1035 95.75 1326 reject_low 6 ALIGNMENT 0 Y12-10h19.q1k chr12 62 826 7437 7436 F 765 0.00 1326 reject_low 239 ALIGNMENT 0 Y12-10h19.q1k chr13 62 822 2026 2025 F 761 0.00 1326 reject_low 210 ALIGNMENT 874 Y12-10h19.q1k chr06 39 1033 107 1102 F 995 96.38 1326 reject_low 27 ALIGNMENT 121 Y12-10h19.q1k chr02 827 1033 1705 1911 F 207 87.44 1326 reject_low 114 ALIGNMENT 87 Y12-10h19.q1k chr02 819 1033 1769 1983 F 215 81.40 1326 reject_low 132 ALIGNMENT 112 Y12-10h19.q1k chr12 827 1072 1938 2184 F 246 82.93 1326 reject_low 246 ALIGNMENT 0 Y12-10h19.q1k chr13 62 823 1703 1702 F 762 0.00 1326 reject_low 63 ALIGNMENT 46 Y12-10h19.q1k chr12 835 924 7661 7750 F 90 85.56 1326 reject_low 259 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 1522 1521 F 762 0.00 1326 reject_low 95 ALIGNMENT 0 Y12-10h19.p1k chr16 720 889 944345 944344 F 170 0.00 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 0 Y12-10h19.q1k chr07 834 62 1089060 1089059 C 773 0.00 1326 reject_low 199 ALIGNMENT 113 Y12-10h19.q1k chr02 827 1073 1597 1844 F 247 83.00 1326 reject_low 116 ALIGNMENT 0 Y12-10h19.q1k chr09 62 834 2165 2164 F 773 0.00 1326 reject_low 187 ALIGNMENT 52 Y12-10h19.p1k chr12 719 664 3832 3887 C 56 98.21 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 148 Y12-10h19.q1k chr08 1033 824 560452 560661 C 210 91.43 1326 reject_low 83 ALIGNMENT 0 Y12-10h19.q1k chr02 62 826 1705 1704 F 765 0.00 1326 reject_low 114 ALIGNMENT 0 Y12-10h19.q1k chr08 859 62 560842 560841 C 798 0.00 1326 reject_low 159 ALIGNMENT 886 Y12-10h19.q1k chr02 39 1033 700 1695 F 995 96.78 1326 reject_low 25 ALIGNMENT 0 Y12-10h19.q1k chr12 826 62 1076579 1076578 C 765 0.00 1326 reject_low 15 ALIGNMENT 946 Y12-10h19.q1k chr08 39 1072 865 1900 F 1034 97.58 1326 reject_low 24 ALIGNMENT 145 Y12-10h19.q1k chr05 824 1073 1614 1864 F 250 87.20 1326 reject_low 33 ALIGNMENT 60 Y12-10h19.q1k chr14 824 935 1862 1973 F 112 86.61 1326 reject_low 175 ALIGNMENT 0 Y12-10h19.p1k chr12 663 643 9423 9412 C 21 0.00 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1076510 1076509 C 762 0.00 1326 reject_low 19 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946387 946386 C 762 0.00 1326 reject_low 223 ALIGNMENT 0 Y12-10h19.q1k chr12 62 834 2018 2017 F 773 0.00 1326 reject_low 250 ALIGNMENT 144 Y12-10h19.q1k chr12 835 1073 1874 2113 F 239 87.87 1326 reject_low 240 ALIGNMENT 139 Y12-10h19.q1k chr12 824 1086 1827 2091 F 263 85.55 1326 reject_low 237 ALIGNMENT 116 Y12-10h19.q1k chr05 824 1123 1578 1882 F 300 81.00 1326 reject_low 31 ALIGNMENT 56 Y12-10h19.q1k chr12 823 996 7577 7750 F 174 78.74 1326 reject_low 257 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946207 946206 C 762 0.00 1326 reject_low 224 ALIGNMENT 893 Y12-10h19.q1k chr12 1073 39 1076439 1077475 C 1035 95.85 1326 ambiguous_tel 4 ALIGNMENT 56 Y12-10h19.q1k chr07 996 823 1088970 1089143 C 174 78.74 1326 reject_low 180 ALIGNMENT 0 Y12-10h19.p1k chr02 559 498 4138 4153 C 62 0.00 1337 reject_low 25 ALIGNMENT 0 Y12-10h19.p1k chr12 889 720 9368 9367 C 170 0.00 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 136 Y12-10h19.q1k chr07 1073 824 1089072 1089322 C 250 86.00 1326 reject_low 87 ALIGNMENT 0 Y12-10h19.q1k chr13 62 823 1847 1846 F 762 0.00 1326 reject_low 102 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1830 1829 F 762 0.00 1326 reject_low 40 ALIGNMENT 0 Y12-10h19.q1k chr07 834 62 1089168 1089167 C 773 0.00 1326 reject_low 134 ALIGNMENT 0 Y12-10h19.q1k chr07 822 62 1089144 1089143 C 761 0.00 1326 reject_low 180 ALIGNMENT 152 Y12-10h19.q1k chr04 1123 824 1530148 1530452 C 300 85.00 1326 reject_low 55 ALIGNMENT 0 Y12-10h19.p1k chr06 609 590 2948 2943 C 20 0.00 1337 reject_low 27 ALIGNMENT 109 Y12-10h19.q1k chr15 1072 827 1089260 1089506 C 246 82.52 1326 reject_low 123 ALIGNMENT 0 Y12-10h19.q1k chr05 62 822 1901 1900 F 761 0.00 1326 reject_low 53 ALIGNMENT 101 Y12-10h19.q1k chr16 1032 835 945962 946159 C 198 84.85 1326 reject_low 228 ALIGNMENT 46 Y12-10h19.q1k chr12 835 924 2126 2215 F 90 85.56 1326 reject_low 258 ALIGNMENT 0 Y12-10h19.p1k chr08 62 440 558621 558620 F 379 0.00 1337 reject_low 29 ALIGNMENT 136 Y12-10h19.q1k chr12 824 1073 7398 7648 F 250 86.00 1326 reject_low 241 ALIGNMENT 0 Y12-10h19.q1k chr04 834 62 1530154 1530153 C 773 0.00 1326 reject_low 197 ALIGNMENT 0 Y12-10h19.p1k chr05 273 218 4590 4585 C 56 0.00 1337 reject_low 10,31,32,33,34,35,36,37,38 ALIGNMENT 54 Y12-10h19.q1k chr08 935 824 560442 560553 C 112 84.82 1326 reject_low 190 ALIGNMENT 0 Y12-10h19.q1k chr12 834 62 1069692 1069691 C 773 0.00 1326 reject_low 51 ALIGNMENT 29 Y12-10h19.p1k chr05 308 274 4555 4589 C 35 94.29 1337 reject_low 10,31,32,33,34,35,36,37,38,39,40,41,44,46,53 ALIGNMENT 0 Y12-10h19.q1k chr12 826 62 1069916 1069915 C 765 0.00 1326 reject_low 14 ALIGNMENT 130 Y12-10h19.q1k chr16 1033 824 945997 946206 C 210 88.57 1326 reject_low 224 ALIGNMENT 52 Y12-10h19.p1k chr08 664 719 558743 558798 F 56 98.21 1337 reject_low 29 ALIGNMENT 98 Y12-10h19.q1k chr04 1032 835 1530064 1530261 C 198 84.34 1326 reject_low 138 ALIGNMENT 142 Y12-10h19.q1k chr16 1086 824 946086 946350 C 263 85.93 1326 reject_low 219 ALIGNMENT 102 Y12-10h19.q1k chr16 1086 860 946266 946494 C 227 82.82 1326 reject_low 222 ALIGNMENT 0 Y12-10h19.q1k chr12 834 62 1069800 1069799 C 773 0.00 1326 reject_low 22 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 1722 1721 F 762 0.00 1326 reject_low 57 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 1558 1557 F 762 0.00 1326 reject_low 141 ALIGNMENT 0 Y12-10h19.q1k chr12 822 62 1076439 1076438 C 761 0.00 1326 reject_low 50 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 7362 7361 F 762 0.00 1326 reject_low 236 ALIGNMENT 0 Y12-10h19.q1k chr02 62 822 1953 1952 F 761 0.00 1326 reject_low 112 ALIGNMENT 0 Y12-10h19.q1k chr16 62 834 1710 1709 F 773 0.00 1326 reject_low 137 ALIGNMENT 57 Y12-10h19.q1k chr12 935 824 1076290 1076401 C 112 85.71 1326 reject_low 48 ALIGNMENT 0 Y12-10h19.q1k chr13 62 834 1894 1893 F 773 0.00 1326 reject_low 135 ALIGNMENT 0 Y12-10h19.q1k chr07 823 62 1089107 1089106 C 762 0.00 1326 reject_low 173 ALIGNMENT 0 Y12-10h19.q1k chr13 62 834 2002 2001 F 773 0.00 1326 reject_low 200 ALIGNMENT 0 Y12-10h19.p1k chr13 440 62 3886 3885 C 379 0.00 1337 reject_low 30 ALIGNMENT 60 Y12-10h19.q1k chr16 824 935 1771 1882 F 112 86.61 1326 reject_low 176 ALIGNMENT 0 Y12-10h19.q1k chr07 895 62 1089395 1089394 C 834 0.00 1326 reject_low 166 ALIGNMENT 94 Y12-10h19.q1k chr06 835 1007 940 1112 F 173 86.13 1326 reject_low 147 ALIGNMENT 31 Y12-10h19.q1k chr02 835 888 2361 2414 F 54 87.04 1326 reject_low 215 ALIGNMENT 0 Y12-10h19.p1k chr05 323 309 4559 4554 C 15 0.00 1337 reject_low 10 ALIGNMENT 0 Y12-10h19.q1k chr06 62 966 892 891 F 905 0.00 1326 reject_low 58 ALIGNMENT 145 Y12-10h19.q1k chr09 824 1073 1758 2008 F 250 87.20 1326 reject_low 78 ALIGNMENT 124 Y12-10h19.q1k chr08 1073 824 560519 560769 C 250 84.40 1326 reject_low 98 ALIGNMENT 101 Y12-10h19.q1k chr12 835 1032 7553 7750 F 198 84.85 1326 reject_low 251 ALIGNMENT 123 Y12-10h19.q1k chr08 860 1073 1651 1865 F 214 86.92 1326 reject_low 99 ALIGNMENT 60 Y12-10h19.q1k chr16 935 824 945987 946098 C 112 86.61 1326 reject_low 230 ALIGNMENT 0 Y12-10h19.q1k chr12 62 822 7685 7684 F 761 0.00 1326 reject_low 260 ALIGNMENT 33 Y12-10h19.q1k chr14 823 888 1933 1998 F 66 84.85 1326 reject_low 211 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 1918 1917 F 762 0.00 1326 reject_low 67 ALIGNMENT 24 Y12-10h19.p1k chr13 589 560 3783 3812 C 30 93.33 1337 reject_low 30 ALIGNMENT 0 Y12-10h19.p1k chr16 62 440 944168 944167 F 379 0.00 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 0 Y12-10h19.q1k chr09 62 834 1949 1948 F 773 0.00 1326 reject_low 115 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1722 1721 F 762 0.00 1326 reject_low 35 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 2145 2144 F 773 0.00 1326 reject_low 92 ALIGNMENT 140 Y12-10h19.q1k chr09 824 1123 1722 2026 F 300 83.67 1326 reject_low 57 ALIGNMENT 57 Y12-10h19.q1k chr06 835 1033 1048 1246 F 199 77.39 1326 reject_low 186 ALIGNMENT 46 Y12-10h19.q1k chr15 924 835 1089229 1089318 C 90 85.56 1326 reject_low 202 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1069955 1069954 C 762 0.00 1326 reject_low 16 ALIGNMENT 0 Y12-10h19.q1k chr08 62 823 1723 1722 F 762 0.00 1326 reject_low 149 ALIGNMENT 146 Y12-10h19.q1k chr16 827 1073 1594 1841 F 247 87.45 1326 reject_low 76 ALIGNMENT 103 Y12-10h19.q1k chr12 824 1073 1755 2005 F 250 81.60 1326 reject_low 248 ALIGNMENT 46 Y12-10h19.q1k chr16 835 924 1818 1907 F 90 85.56 1326 reject_low 203 ALIGNMENT 127 Y12-10h19.q1k chr16 1073 824 946136 946386 C 250 84.80 1326 reject_low 223 ALIGNMENT 62 Y12-10h19.q1k chr12 1033 896 1076552 1076689 C 138 82.61 1326 reject_low 45 ALIGNMENT 29 Y12-10h19.p1k chr12 642 610 9413 9445 C 33 96.97 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 46 Y12-10h19.q1k chr14 835 924 1909 1998 F 90 85.56 1326 reject_low 201 ALIGNMENT 0 Y12-10h19.p1k chr13 559 498 3813 3828 C 62 0.00 1337 reject_low 30 ALIGNMENT 62 Y12-10h19.q1k chr13 896 1033 1667 1804 F 138 82.61 1326 reject_low 168 ALIGNMENT 0 Y12-10h19.q1k chr09 62 926 1681 1680 F 865 0.00 1326 reject_low 154 ALIGNMENT 884 Y12-10h19.q1k chr14 39 1073 788 1824 F 1035 95.56 1326 reject_low 9 ALIGNMENT 887 Y12-10h19.q1k chr12 39 1073 6540 7576 F 1035 95.65 1326 reject_low 28 ALIGNMENT 0 Y12-10h19.q1k chr16 834 62 946052 946051 C 773 0.00 1326 reject_low 232 ALIGNMENT 46 Y12-10h19.q1k chr16 924 835 945962 946051 C 90 85.56 1326 reject_low 232 ALIGNMENT 0 Y12-10h19.q1k chr05 822 62 574959 574958 C 761 0.00 1326 reject_low 208 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 1758 1757 F 762 0.00 1326 reject_low 78 ALIGNMENT 60 Y12-10h19.q1k chr05 935 824 574918 575029 C 112 86.61 1326 reject_low 172 ALIGNMENT 0 Y12-10h19.q1k chr15 822 62 1089295 1089294 C 761 0.00 1326 reject_low 212 ALIGNMENT 0 Y12-10h19.q1k chr13 62 895 1667 1666 F 834 0.00 1326 reject_low 168 ALIGNMENT 1029 Y12-10h19.p1k chr09 1126 26 4052 5162 C 1101 98.27 1337 ambiguous_tel 1 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 2217 2216 F 773 0.00 1326 reject_low 128 ALIGNMENT 88 Y12-10h19.q1k chr02 824 1073 1558 1808 F 250 79.60 1326 reject_low 141 ALIGNMENT 0 Y12-10h19.q1k chr07 823 62 1089323 1089322 C 762 0.00 1326 reject_low 87 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1076618 1076617 C 762 0.00 1326 reject_low 17 ALIGNMENT 0 Y12-10h19.q1k chr08 62 822 1866 1865 F 761 0.00 1326 reject_low 214 ALIGNMENT 112 Y12-10h19.q1k chr16 1072 827 945993 946239 C 246 82.93 1326 reject_low 226 ALIGNMENT 63 Y12-10h19.q1k chr07 1073 860 1089180 1089394 C 214 77.57 1326 reject_low 158 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 1990 1989 F 762 0.00 1326 reject_low 68 ALIGNMENT 0 Y12-10h19.q1k chr14 62 895 1574 1573 F 834 0.00 1326 reject_low 169 ALIGNMENT 0 Y12-10h19.p1k chr12 609 590 9446 9441 C 20 0.00 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 152 Y12-10h19.q1k chr12 1123 824 1076349 1076653 C 300 85.00 1326 reject_low 13 ALIGNMENT 53 Y12-10h19.p1k chr08 497 441 3685 3741 C 57 98.25 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.q1k chr16 834 62 946304 946303 C 773 0.00 1326 reject_low 221 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 1794 1793 F 762 0.00 1326 reject_low 60 ALIGNMENT 0 Y12-10h19.p1k chr12 609 590 3911 3906 C 20 0.00 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 89 Y12-10h19.q1k chr08 824 1007 1723 1906 F 184 84.24 1326 reject_low 149 ALIGNMENT 138 Y12-10h19.q1k chr10 824 1072 1705 1954 F 249 86.35 1326 reject_low 84 ALIGNMENT 0 Y12-10h19.p1k chr12 218 273 1067098 1067093 F 56 0.00 1337 ambiguous_tel 0 reject_low 12,13,14,15,16,17,18,19,20,21,22,23 ALIGNMENT 0 Y12-10h19.q1k chr15 826 62 1089507 1089506 C 765 0.00 1326 reject_low 123 ALIGNMENT 136 Y12-10h19.q1k chr08 1072 827 560448 560694 C 246 86.18 1326 reject_low 93 ALIGNMENT 0 Y12-10h19.q1k chr15 895 62 1089654 1089653 C 834 0.00 1326 reject_low 170 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 1630 1629 F 762 0.00 1326 reject_low 77 ALIGNMENT 0 Y12-10h19.q1k chr08 823 62 560770 560769 C 762 0.00 1326 reject_low 98 ALIGNMENT 0 Y12-10h19.q1k chr16 62 823 1663 1662 F 762 0.00 1326 reject_low 104 ALIGNMENT 112 Y12-10h19.q1k chr12 827 1072 7473 7719 F 246 82.93 1326 reject_low 247 ALIGNMENT 98 Y12-10h19.q1k chr12 1032 835 1069602 1069799 C 198 84.34 1326 reject_low 22 ALIGNMENT 143 Y12-10h19.q1k chr12 1073 827 1069668 1069915 C 247 87.04 1326 reject_low 14 ALIGNMENT 0 Y12-10h19.p1k chr16 590 609 944271 944266 F 20 0.00 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1614 1613 F 762 0.00 1326 reject_low 33 ALIGNMENT 110 Y12-10h19.q1k chr02 835 1032 2217 2414 F 198 86.36 1326 reject_low 128 ALIGNMENT 47 Y12-10h19.q1k chr08 835 935 1806 1906 F 101 84.16 1326 reject_low 196 ALIGNMENT 88 Y12-10h19.q1k chr10 860 1071 1669 1881 F 212 81.60 1326 reject_low 146 ALIGNMENT 45 Y12-10h19.q1k chr10 927 1086 1664 1825 F 160 76.88 1326 reject_low 155 ALIGNMENT 56 Y12-10h19.q1k chr16 823 996 1734 1907 F 174 78.74 1326 reject_low 183 ALIGNMENT 63 Y12-10h19.q1k chr16 860 1073 1483 1697 F 214 77.57 1326 reject_low 163 ALIGNMENT 0 Y12-10h19.p1k chr02 889 720 4034 4033 C 170 0.00 1337 reject_low 25 ALIGNMENT 120 Y12-10h19.q1k chr02 835 1073 2073 2312 F 239 84.52 1326 reject_low 111 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 1738 1737 F 762 0.00 1326 reject_low 107 ALIGNMENT 63 Y12-10h19.q1k chr12 1073 860 1069812 1070026 C 214 77.57 1326 reject_low 42 ALIGNMENT 0 Y12-10h19.q1k chr02 62 826 1597 1596 F 765 0.00 1326 reject_low 116 ALIGNMENT 0 Y12-10h19.q1k chr05 859 62 575318 575317 C 798 0.00 1326 reject_low 157 ALIGNMENT 0 Y12-10h19.q1k chr16 62 859 1483 1482 F 798 0.00 1326 reject_low 163 ALIGNMENT 0 Y12-10h19.p1k chr08 720 889 558798 558797 F 170 0.00 1337 reject_low 29 ALIGNMENT 130 Y12-10h19.q1k chr07 1033 824 1089005 1089214 C 210 88.57 1326 reject_low 101 ALIGNMENT 110 Y12-10h19.q1k chr08 1032 835 560417 560614 C 198 86.36 1326 reject_low 129 ALIGNMENT 0 Y12-10h19.q1k chr12 834 62 1076355 1076354 C 773 0.00 1326 reject_low 52 ALIGNMENT 153 Y12-10h19.q1k chr09 824 1072 1974 2223 F 249 88.35 1326 reject_low 70 ALIGNMENT 991 Y12-10h19.p1k chr16 1126 26 3573 4682 C 1101 97.09 1337 reject_low 8 ALIGNMENT 24 Y12-10h19.p1k chr06 589 560 2944 2973 C 30 93.33 1337 reject_low 27 ALIGNMENT 136 Y12-10h19.q1k chr04 1073 824 1530166 1530416 C 250 86.00 1326 reject_low 85 ALIGNMENT 62 Y12-10h19.q1k chr15 1033 896 1089516 1089653 C 138 82.61 1326 reject_low 170 ALIGNMENT 46 Y12-10h19.q1k chr13 835 924 2002 2091 F 90 85.56 1326 reject_low 200 ALIGNMENT 24 Y12-10h19.p1k chr12 589 560 3907 3936 C 30 93.33 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 0 Y12-10h19.q1k chr02 62 822 1845 1844 F 761 0.00 1326 reject_low 97 ALIGNMENT 0 Y12-10h19.p1k chr08 889 720 3565 3564 C 170 0.00 1337 reject_low 24 ALIGNMENT 109 Y12-10h19.q1k chr04 1072 827 1530095 1530341 C 246 82.52 1326 reject_low 122 ALIGNMENT 57 Y12-10h19.q1k chr04 935 824 1530089 1530200 C 112 85.71 1326 reject_low 184 ALIGNMENT 124 Y12-10h19.q1k chr12 824 1073 1791 2041 F 250 84.40 1326 reject_low 242 ALIGNMENT 52 Y12-10h19.p1k chr06 719 664 2869 2924 C 56 98.21 1337 reject_low 27 ALIGNMENT 148 Y12-10h19.q1k chr02 824 1033 2170 2379 F 210 91.43 1326 reject_low 82 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946279 946278 C 762 0.00 1326 reject_low 220 ALIGNMENT 53 Y12-10h19.p1k chr12 497 441 9488 9544 C 57 98.25 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 0 Y12-10h19.q1k chr12 62 822 2042 2041 F 761 0.00 1326 reject_low 256 ALIGNMENT 893 Y12-10h19.q1k chr15 1073 39 1089403 1090439 C 1035 95.85 1326 ambiguous_tel 5 ALIGNMENT 0 Y12-10h19.q1k chr06 966 974 1107 1127 F 9 0.00 1326 reject_low 235 ALIGNMENT 101 Y12-10h19.q1k chr16 835 1032 1710 1907 F 198 84.85 1326 reject_low 137 ALIGNMENT 0 Y12-10h19.q1k chr12 889 895 2216 7325 F 7 0.00 1326 reject_low 261 ALIGNMENT 0 Y12-10h19.q1k chr16 822 62 946028 946027 C 761 0.00 1326 reject_low 233 ALIGNMENT 0 Y12-10h19.p1k chr06 889 720 2870 2869 C 170 0.00 1337 reject_low 27 ALIGNMENT 24 Y12-10h19.p1k chr08 589 560 3639 3668 C 30 93.33 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.p1k chr12 309 889 1067128 1067127 F 581 0.00 1337 reject_low 12,13,14,15,16,17,18,19,20,21,22,23,42,43,45,47,48,49,50,51,52,54,218 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 7506 7505 F 762 0.00 1326 reject_low 244 ALIGNMENT 0 Y12-10h19.q1k chr12 826 62 1076543 1076542 C 765 0.00 1326 reject_low 21 ALIGNMENT 56 Y12-10h19.q1k chr16 996 823 945962 946135 C 174 78.74 1326 reject_low 231 ALIGNMENT 743 Y12-10h19.p1k chr12 324 1213 1067125 1068039 F 890 95.39 1337 ambiguous_tel 0 ALIGNMENT 0 Y12-10h19.q1k chr02 62 818 1769 1768 F 757 0.00 1326 reject_low 132 ALIGNMENT 0 Y12-10h19.p1k chr06 559 498 2974 2989 C 62 0.00 1337 reject_low 27 ALIGNMENT 33 Y12-10h19.q1k chr15 888 823 1089229 1089294 C 66 84.85 1326 reject_low 212 ALIGNMENT 62 Y12-10h19.q1k chr04 1033 896 1530351 1530488 C 138 82.61 1326 reject_low 164 ALIGNMENT 65 Y12-10h19.q1k chr10 896 1086 1669 1861 F 191 79.06 1326 reject_low 143 ALIGNMENT 103 Y12-10h19.q1k chr09 819 1073 1897 2152 F 255 81.18 1326 reject_low 113 ALIGNMENT 56 Y12-10h19.q1k chr05 996 823 574893 575066 C 174 78.74 1326 reject_low 179 ALIGNMENT 893 Y12-10h19.q1k chr12 1073 39 1069776 1070812 C 1035 95.85 1326 ambiguous_tel 0 ALIGNMENT 0 Y12-10h19.q1k chr12 834 62 1076463 1076462 C 773 0.00 1326 reject_low 23 ALIGNMENT 101 Y12-10h19.q1k chr07 1032 835 1088970 1089167 C 198 84.85 1326 reject_low 134 ALIGNMENT 63 Y12-10h19.q1k chr13 860 1073 1667 1881 F 214 77.57 1326 reject_low 160 ALIGNMENT 1006 Y12-10h19.p1k chr15 22 1126 1086449 1087563 F 1105 97.47 1337 ambiguous_tel 5 ALIGNMENT 145 Y12-10h19.q1k chr02 824 1073 1630 1880 F 250 87.20 1326 reject_low 77 ALIGNMENT 92 Y12-10h19.q1k chr08 896 1073 1651 1829 F 178 84.83 1326 reject_low 131 ALIGNMENT 0 Y12-10h19.q1k chr09 62 895 1686 1685 F 834 0.00 1326 reject_low 142 ALIGNMENT 101 Y12-10h19.q1k chr05 824 1007 1758 1941 F 184 86.41 1326 reject_low 38 ALIGNMENT 0 Y12-10h19.q1k chr16 62 823 1555 1554 F 762 0.00 1326 reject_low 91 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 2098 2097 F 762 0.00 1326 reject_low 106 ALIGNMENT 0 Y12-10h19.q1k chr07 859 62 1089395 1089394 C 798 0.00 1326 reject_low 158 ALIGNMENT 149 Y12-10h19.q1k chr12 827 1073 1902 2149 F 247 87.85 1326 reject_low 238 ALIGNMENT 24 Y12-10h19.p1k chr16 560 589 944241 944270 F 30 93.33 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 33 Y12-10h19.q1k chr13 823 888 2026 2091 F 66 84.85 1326 reject_low 210 ALIGNMENT 41 Y12-10h19.q1k chr08 835 925 1842 1932 F 91 83.52 1326 reject_low 204 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1758 1757 F 762 0.00 1326 reject_low 38 ALIGNMENT 109 Y12-10h19.q1k chr12 1072 827 1069633 1069879 C 246 82.52 1326 reject_low 20 ALIGNMENT 49 Y12-10h19.q1k chr06 823 1001 1072 1250 F 179 77.09 1326 reject_low 193 ALIGNMENT 74 Y12-10h19.q1k chr10 824 965 1813 1954 F 142 85.92 1326 reject_low 151 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 1830 1829 F 762 0.00 1326 reject_low 124 ALIGNMENT 60 Y12-10h19.q1k chr07 935 824 1088995 1089106 C 112 86.61 1326 reject_low 173 ALIGNMENT 136 Y12-10h19.q1k chr14 824 1073 1646 1896 F 250 86.00 1326 reject_low 89 ALIGNMENT 127 Y12-10h19.q1k chr12 1033 824 1076300 1076509 C 210 88.10 1326 reject_low 19 ALIGNMENT 112 Y12-10h19.q1k chr14 827 1072 1721 1967 F 246 82.93 1326 reject_low 120 ALIGNMENT 60 Y12-10h19.q1k chr13 824 935 1955 2066 F 112 86.61 1326 reject_low 174 ALIGNMENT 143 Y12-10h19.q1k chr12 1073 827 1076331 1076578 C 247 87.04 1326 reject_low 15 ALIGNMENT 112 Y12-10h19.q1k chr05 824 1073 1542 1792 F 250 82.80 1326 reject_low 36 ALIGNMENT 0 Y12-10h19.q1k chr04 826 62 1530378 1530377 C 765 0.00 1326 reject_low 79 ALIGNMENT 0 Y12-10h19.q1k chr08 62 834 1842 1841 F 773 0.00 1326 reject_low 204 ALIGNMENT 0 Y12-10h19.p1k chr13 663 643 3764 3753 C 21 0.00 1337 reject_low 30 ALIGNMENT 0 Y12-10h19.q1k chr16 62 834 1818 1817 F 773 0.00 1326 reject_low 203 ALIGNMENT 0 Y12-10h19.q1k chr04 822 62 1530130 1530129 C 761 0.00 1326 reject_low 207 ALIGNMENT 881 Y12-10h19.q1k chr09 39 1073 900 1936 F 1035 95.46 1326 ambiguous_tel 1 ALIGNMENT 0 Y12-10h19.q1k chr08 834 62 560471 560470 C 773 0.00 1326 reject_low 216 ALIGNMENT 109 Y12-10h19.q1k chr12 1072 827 1076296 1076542 C 246 82.52 1326 reject_low 21 ALIGNMENT 0 Y12-10h19.q1k chr12 62 895 1683 1682 F 834 0.00 1326 reject_low 252 ALIGNMENT 0 Y12-10h19.q1k chr12 895 889 1070027 1076264 C 7 0.00 1326 reject_low 218 ALIGNMENT 114 Y12-10h19.q1k chr02 823 1073 1953 2204 F 251 82.87 1326 reject_low 112 ALIGNMENT 913 Y12-10h19.q1k chr16 1069 39 946248 947280 C 1031 96.61 1326 reject_low 11 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 1974 1973 F 762 0.00 1326 reject_low 70 ALIGNMENT 98 Y12-10h19.q1k chr12 1032 835 1076265 1076462 C 198 84.34 1326 reject_low 23 ALIGNMENT 0 Y12-10h19.p1k chr08 559 498 3669 3684 C 62 0.00 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.p1k chr08 498 559 558678 558693 F 62 0.00 1337 reject_low 29 ALIGNMENT 29 Y12-10h19.p1k chr12 642 610 3878 3910 C 33 96.97 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 65 Y12-10h19.q1k chr16 1073 896 946316 946494 C 178 79.78 1326 reject_low 229 ALIGNMENT 0 Y12-10h19.q1k chr08 823 62 560590 560589 C 762 0.00 1326 reject_low 178 ALIGNMENT 0 Y12-10h19.q1k chr14 62 826 1685 1684 F 765 0.00 1326 reject_low 75 ALIGNMENT 151 Y12-10h19.q1k chr16 1073 824 946028 946278 C 250 88.00 1326 reject_low 220 ALIGNMENT 53 Y12-10h19.q1k chr06 835 965 976 1106 F 131 81.68 1326 reject_low 235 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1069847 1069846 C 762 0.00 1326 reject_low 18 ALIGNMENT 146 Y12-10h19.q1k chr07 1073 827 1089036 1089283 C 247 87.45 1326 reject_low 73 ALIGNMENT 63 Y12-10h19.q1k chr12 860 1073 7326 7540 F 214 77.57 1326 reject_low 253 ALIGNMENT 0 Y12-10h19.q1k chr16 895 62 946495 946494 C 834 0.00 1326 reject_low 229 ALIGNMENT 0 Y12-10h19.p1k chr13 889 720 3709 3708 C 170 0.00 1337 reject_low 30 ALIGNMENT 0 Y12-10h19.p1k chr08 590 609 558724 558719 F 20 0.00 1337 reject_low 29 ALIGNMENT 22 Y12-10h19.q1k chr06 975 1033 1128 1186 F 59 79.66 1326 reject_low 235 ALIGNMENT 127 Y12-10h19.q1k chr08 824 1033 1687 1896 F 210 88.10 1326 reject_low 109 ALIGNMENT 0 Y12-10h19.q1k chr05 62 823 1542 1541 F 762 0.00 1326 reject_low 36 ALIGNMENT 0 Y12-10h19.q1k chr05 823 62 575138 575137 C 762 0.00 1326 reject_low 100 ALIGNMENT 0 Y12-10h19.p1k chr12 889 720 3833 3832 C 170 0.00 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 62 Y12-10h19.q1k chr14 896 1033 1574 1711 F 138 82.61 1326 reject_low 169 ALIGNMENT 0 Y12-10h19.p1k chr12 440 62 4010 4009 C 379 0.00 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 29 Y12-10h19.p1k chr13 642 610 3754 3786 C 33 96.97 1337 reject_low 30 ALIGNMENT 130 Y12-10h19.q1k chr13 824 1033 1847 2056 F 210 88.57 1326 reject_low 102 ALIGNMENT 0 Y12-10h19.q1k chr13 62 826 1778 1777 F 765 0.00 1326 reject_low 74 ALIGNMENT 189 Y12-10h19.p1k chr12 22 217 1066901 1067097 F 196 99.49 1337 ambiguous_tel 0 reject_low 12,13,14,15,16,17,18,19,20,21,22,23 ALIGNMENT 0 Y12-10h19.p1k chr08 440 62 3742 3741 C 379 0.00 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.q1k chr14 62 826 1721 1720 F 765 0.00 1326 reject_low 120 ALIGNMENT 0 Y12-10h19.q1k chr12 62 834 1874 1873 F 773 0.00 1326 reject_low 240 ALIGNMENT 0 Y12-10h19.q1k chr16 823 62 946099 946098 C 762 0.00 1326 reject_low 230 ALIGNMENT 152 Y12-10h19.q1k chr15 1123 824 1089313 1089617 C 300 85.00 1326 reject_low 56 ALIGNMENT 53 Y12-10h19.q1k chr12 996 823 1076265 1076438 C 174 78.16 1326 reject_low 50 ALIGNMENT 0 Y12-10h19.q1k chr16 826 62 946240 946239 C 765 0.00 1326 reject_low 226 ALIGNMENT 57 Y12-10h19.q1k chr09 835 1033 2165 2363 F 199 77.39 1326 reject_low 187 ALIGNMENT 0 Y12-10h19.q1k chr14 62 834 1909 1908 F 773 0.00 1326 reject_low 201 ALIGNMENT 991 Y12-10h19.p1k chr05 22 1126 572113 573227 F 1105 97.01 1337 reject_low 6 ALIGNMENT 0 Y12-10h19.q1k chr12 822 62 1069776 1069775 C 761 0.00 1326 reject_low 49 ALIGNMENT 60 Y12-10h19.q1k chr08 996 824 560417 560589 C 173 79.77 1326 reject_low 178 ALIGNMENT 130 Y12-10h19.q1k chr16 1033 824 946249 946458 C 210 88.57 1326 reject_low 225 ALIGNMENT 54 Y12-10h19.q1k chr02 824 935 2278 2389 F 112 84.82 1326 reject_low 189 ALIGNMENT 0 Y12-10h19.q1k chr15 822 62 1089403 1089402 C 761 0.00 1326 reject_low 192 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 2242 2241 F 762 0.00 1326 reject_low 177 ALIGNMENT 0 Y12-10h19.q1k chr12 62 823 1719 1718 F 762 0.00 1326 reject_low 245 ALIGNMENT 63 Y12-10h19.q1k chr15 1073 860 1089439 1089653 C 214 77.57 1326 reject_low 162 ALIGNMENT 33 Y12-10h19.q1k chr12 823 888 7685 7750 F 66 84.85 1326 reject_low 260 ALIGNMENT 33 Y12-10h19.q1k chr12 823 888 2150 2215 F 66 84.85 1326 reject_low 261 ALIGNMENT 0 Y12-10h19.q1k chr10 62 823 1849 1848 F 762 0.00 1326 reject_low 188 ALIGNMENT 0 Y12-10h19.q1k chr05 823 62 575030 575029 C 762 0.00 1326 reject_low 172 ALIGNMENT 0 Y12-10h19.q1k chr12 62 826 1938 1937 F 765 0.00 1326 reject_low 246 ALIGNMENT 0 Y12-10h19.q1k chr12 62 859 7326 7325 F 798 0.00 1326 reject_low 253 ALIGNMENT 53 Y12-10h19.p1k chr08 441 497 558621 558677 F 57 98.25 1337 reject_low 29 ALIGNMENT 52 Y12-10h19.p1k chr08 719 664 3564 3619 C 56 98.21 1337 reject_low 24 ALIGNMENT 0 Y12-10h19.q1k chr08 826 62 560731 560730 C 765 0.00 1326 reject_low 105 ALIGNMENT 143 Y12-10h19.q1k chr15 1073 827 1089295 1089542 C 247 87.04 1326 reject_low 80 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 2361 2360 F 773 0.00 1326 reject_low 215 ALIGNMENT 101 Y12-10h19.q1k chr12 835 1032 2018 2215 F 198 84.85 1326 reject_low 250 ALIGNMENT 146 Y12-10h19.q1k chr14 827 1073 1685 1932 F 247 87.45 1326 reject_low 75 ALIGNMENT 0 Y12-10h19.q1k chr05 62 834 1805 1804 F 773 0.00 1326 reject_low 44 ALIGNMENT 29 Y12-10h19.p1k chr12 274 308 1067094 1067128 F 35 94.29 1337 ambiguous_tel 0 reject_low 12,13,14,15,16,17,18,19,20,21,22,23,42,43,45,47,48,49,50,51,52,54,218 ALIGNMENT 24 Y12-10h19.p1k chr02 589 560 4108 4137 C 30 93.33 1337 reject_low 25 ALIGNMENT 0 Y12-10h19.q1k chr13 62 826 1814 1813 F 765 0.00 1326 reject_low 119 ALIGNMENT 0 Y12-10h19.q1k chr10 62 926 1664 1663 F 865 0.00 1326 reject_low 155 ALIGNMENT 1006 Y12-10h19.p1k chr12 22 1126 1073485 1074599 F 1105 97.47 1337 ambiguous_tel 4 ALIGNMENT 0 Y12-10h19.q1k chr08 823 62 560662 560661 C 762 0.00 1326 reject_low 83 ALIGNMENT 53 Y12-10h19.q1k chr12 996 823 1069602 1069775 C 174 78.16 1326 reject_low 49 ALIGNMENT 158 Y12-10h19.q1k chr10 824 1007 1777 1960 F 184 96.74 1326 reject_low 71 ALIGNMENT 49 Y12-10h19.q1k chr09 823 1001 2189 2367 F 179 77.09 1326 reject_low 194 ALIGNMENT 0 Y12-10h19.p1k chr16 498 559 944225 944240 F 62 0.00 1337 reject_low 11,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233 ALIGNMENT 112 Y12-10h19.q1k chr02 824 1086 2026 2290 F 263 82.13 1326 reject_low 81 ALIGNMENT 0 Y12-10h19.q1k chr15 834 62 1089427 1089426 C 773 0.00 1326 reject_low 139 ALIGNMENT 0 Y12-10h19.q1k chr12 823 62 1069739 1069738 C 762 0.00 1326 reject_low 47 ALIGNMENT 169 Y12-10h19.q1k chr05 824 1073 1650 1900 F 250 90.40 1326 reject_low 32 ALIGNMENT 681 Y12-10h19.p1k chr05 1126 324 3728 4558 C 803 95.39 1337 reject_low 10 ALIGNMENT 0 Y12-10h19.q1k chr12 859 62 1070027 1070026 C 798 0.00 1326 reject_low 42 ALIGNMENT 0 Y12-10h19.q1k chr16 834 62 946160 946159 C 773 0.00 1326 reject_low 228 ALIGNMENT 0 Y12-10h19.q1k chr15 826 62 1089543 1089542 C 765 0.00 1326 reject_low 80 ALIGNMENT 0 Y12-10h19.q1k chr08 826 62 560695 560694 C 765 0.00 1326 reject_low 93 ALIGNMENT 0 Y12-10h19.q1k chr09 62 823 2118 2117 F 762 0.00 1326 reject_low 153 ALIGNMENT 127 Y12-10h19.q1k chr04 1033 824 1530099 1530308 C 210 88.10 1326 reject_low 108 ALIGNMENT 143 Y12-10h19.q1k chr04 1073 827 1530130 1530377 C 247 87.04 1326 reject_low 79 ALIGNMENT 151 Y12-10h19.q1k chr14 824 1086 1610 1874 F 263 87.07 1326 reject_low 64 ALIGNMENT 136 Y12-10h19.q1k chr13 824 1073 1739 1989 F 250 86.00 1326 reject_low 88 ALIGNMENT 0 Y12-10h19.q1k chr05 62 895 1470 1469 F 834 0.00 1326 reject_low 41 ALIGNMENT 130 Y12-10h19.q1k chr16 824 1033 1663 1872 F 210 88.57 1326 reject_low 104 ALIGNMENT 0 Y12-10h19.q1k chr16 62 826 1594 1593 F 765 0.00 1326 reject_low 76 ALIGNMENT 63 Y12-10h19.q1k chr08 1073 860 560627 560841 C 214 77.57 1326 reject_low 159 ALIGNMENT 62 Y12-10h19.q1k chr12 1033 896 1069889 1070026 C 138 82.61 1326 reject_low 218 ALIGNMENT 0 Y12-10h19.p1k chr12 663 643 3888 3877 C 21 0.00 1337 reject_low 26,237,238,240,242,243,245,246,248,249,250,252,254,256,258 ALIGNMENT 33 Y12-10h19.q1k chr04 888 823 1530064 1530129 C 66 84.85 1326 reject_low 207 ALIGNMENT 63 Y12-10h19.q1k chr05 1073 860 575103 575317 C 214 77.57 1326 reject_low 157 ALIGNMENT 100 Y12-10h19.q1k chr05 824 1033 1506 1715 F 210 83.81 1326 reject_low 37 ALIGNMENT 122 Y12-10h19.q1k chr09 824 1123 1866 2170 F 300 81.67 1326 reject_low 59 ALIGNMENT 0 Y12-10h19.q1k chr02 62 823 2278 2277 F 762 0.00 1326 reject_low 189 ALIGNMENT 65 Y12-10h19.q1k chr12 896 1073 1683 1861 F 178 79.78 1326 reject_low 252 ALIGNMENT 151 Y12-10h19.q1k chr13 824 1086 1703 1967 F 263 87.07 1326 reject_low 63 ALIGNMENT 52 Y12-10h19.p1k chr12 719 664 9367 9422 C 56 98.21 1337 reject_low 28,236,239,241,244,247,251,253,255,257,259,260,261 ALIGNMENT 0 Y12-10h19.p1k chr08 643 663 558753 558742 F 21 0.00 1337 reject_low 29 ALIGNMENT 0 Y12-10h19.q1k chr02 62 834 1677 1676 F 773 0.00 1326 reject_low 66 ALIGNMENT 101 Y12-10h19.q1k chr05 1032 835 574893 575090 C 198 84.85 1326 reject_low 133 ALIGNMENT 0 Y12-10h19.q1k chr12 62 834 2126 2125 F 773 0.00 1326 reject_low 258 ALIGNMENT 131 Y12-10h19.q1k chr02 824 1071 1522 1770 F 248 85.48 1326 reject_low 95 ALIGNMENT 46 Y12-10h19.q1k chr04 924 835 1530064 1530153 C 90 85.56 1326 reject_low 197 ALIGNMENT 0 Y12-10h19.q1k chr05 62 859 1470 1469 F 798 0.00 1326 reject_low 39 ALIGNMENT 0 Y12-10h19.q1k chr06 62 834 940 939 F 773 0.00 1326 reject_low 147 ALIGNMENT 0 Y12-10h19.p1k chr02 609 590 4112 4107 C 20 0.00 1337 reject_low 25 ALIGNMENT 0 Y12-10h19.q1k chr14 62 859 1574 1573 F 798 0.00 1326 reject_low 161 ALIGNMENT 976 Y12-10h20.q1k chr08 37 1339 444273 445579 F 1303 93.09 1345 accept 0 ALIGNMENT 933 Y12-10h20.p1k chr08 1099 17 447292 448390 C 1083 97.23 1349 accept 0 ALIGNMENT 1056 Y12-10h21.p1k chr14 17 1251 338265 339506 F 1235 96.36 1337 accept 0 ALIGNMENT 993 Y12-10h21.q1k chr14 1248 31 342159 343387 C 1218 95.07 1306 accept 0 ALIGNMENT 730 Y12-10h22.q1k chr02 37 893 497960 498807 F 857 96.27 1402 accept 0 ALIGNMENT 1081 Y12-10h22.p1k chr02 1230 24 501822 503039 C 1207 97.18 1345 accept 0 ALIGNMENT 303 Y12-10h23.q1k chr15 631 33 36790 37387 C 599 83.14 1441 accept 0 ALIGNMENT 1058 Y12-10h23.p1k chr15 30 1267 32822 34067 F 1238 96.53 1293 accept 0 ALIGNMENT 0 Y12-10h24.q1k chr14 702 62 443817 443816 C 641 0.00 1275 reject_low 2 ALIGNMENT 1073 Y12-10h24.p1k chr12 17 1278 659190 660466 F 1262 95.96 1307 accept_chi 0 ALIGNMENT 999 Y12-10h24.q1k chr15 46 1225 505694 506873 F 1180 96.27 1275 accept_chi 1 ALIGNMENT 225 Y12-10h24.q1k chr14 1100 703 443416 443816 C 398 85.93 1275 reject_low 2 ALIGNMENT 209 Y12-10i01.p1k chr09 53 498 13218 13664 F 446 83.63 1299 reject_low 2 ALIGNMENT 0 Y12-10i01.p1k chr14 854 384 752944 752943 C 471 0.00 1299 reject_low 3 ALIGNMENT 903 Y12-10i01.p1k chr03 1112 14 300174 301292 C 1099 95.72 1299 accept 0 ALIGNMENT 0 Y12-10i01.p1k chr10 501 854 13649 13648 F 354 0.00 1299 reject_low 1 ALIGNMENT 226 Y12-10i01.p1k chr10 19 500 13167 13649 F 482 83.61 1299 reject_low 1 ALIGNMENT 173 Y12-10i01.p1k chr14 383 19 752943 753307 C 365 83.56 1299 reject_low 3 ALIGNMENT 0 Y12-10i01.p1k chr09 499 854 13664 13663 F 356 0.00 1299 reject_low 2 ALIGNMENT 877 Y12-10i02.q1k chr02 1054 33 218539 219560 C 1022 96.67 1409 accept 0 ALIGNMENT 753 Y12-10i02.p1k chr02 17 1040 214019 215025 F 1024 93.16 1419 accept 0 ALIGNMENT 0 Y12-10i03.p1k chr06 695 761 158669 158668 F 67 0.00 1356 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-10i03.p1k chr10 711 761 483887 483886 F 51 0.00 1356 ambiguous_trans 11 ALIGNMENT 0 Y12-10i03.p1k chr16 761 536 850354 850353 C 226 0.00 1356 ambiguous_trans_ua 26 ALIGNMENT 582 Y12-10i03.p1k chr12 713 14 215077 215783 C 700 96.57 1356 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-10i03.p1k chr01 761 690 165848 165847 C 72 0.00 1356 ambiguous_trans 22 ALIGNMENT 605 Y12-10i03.p1k chr08 709 14 543610 544306 C 696 97.70 1356 ambiguous_trans 6 ALIGNMENT 661 Y12-10i03.q1k chr14 1074 153 446357 447261 C 922 92.19 1467 accept 0 ALIGNMENT 0 Y12-10i03.p1k chr01 377 62 166164 166163 C 316 0.00 1356 ambiguous_trans 22 ALIGNMENT 641 Y12-10i03.p1k chr15 14 709 600038 600734 F 696 99.43 1356 ambiguous_trans 3 ALIGNMENT 0 Y12-10i03.p1k chr06 62 375 137906 137905 F 314 0.00 1356 ambiguous_trans 24 ALIGNMENT 0 Y12-10i03.p1k chr14 761 690 96631 96630 C 72 0.00 1356 ambiguous_trans 10 ALIGNMENT 0 Y12-10i03.p1k chr05 761 516 492692 492691 C 246 0.00 1356 ambiguous_trans 17 ALIGNMENT 605 Y12-10i03.p1k chr13 14 709 189387 190083 F 696 97.70 1356 ambiguous_trans 7 ALIGNMENT 0 Y12-10i03.p1k chr15 710 761 600734 600733 F 52 0.00 1356 ambiguous_trans 3 ALIGNMENT 0 Y12-10i03.p1k chr04 710 761 1101687 1101686 F 52 0.00 1356 ambiguous_trans 14 ALIGNMENT 160 Y12-10i03.p1k chr06 381 643 137658 137907 F 263 91.25 1356|0,2 ambiguous_trans 28 ALIGNMENT 0 Y12-10i03.p1k chr06 687 761 138216 138215 F 75 0.00 1356 ambiguous_trans 24 ALIGNMENT 131 Y12-10i03.p1k chr06 430 694 158408 158669 F 265 86.04 1356 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-10i03.p1k chr02 690 761 226935 226934 F 72 0.00 1356 ambiguous_trans 9 ALIGNMENT 0 Y12-10i03.p1k chr02 711 761 265493 265492 F 51 0.00 1356 ambiguous_trans 2 ALIGNMENT 192 Y12-10i03.p1k chr01 689 378 165847 166163 C 312 89.74 1356 ambiguous_trans 22 ALIGNMENT 0 Y12-10i03.p1k chr12 761 714 215078 215077 C 48 0.00 1356 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-10i03.p1k chr12 761 690 475996 475995 C 72 0.00 1356 ambiguous_trans 20 ALIGNMENT 560 Y12-10i03.p1k chr16 689 14 850645 851327 C 676 96.45 1356 ambiguous_trans 15 ALIGNMENT 0 Y12-10i03.p1k chr08 761 710 543611 543610 C 52 0.00 1356 ambiguous_trans 6 ALIGNMENT 418 Y12-10i03.p1k chr01 689 14 160259 160940 C 676 89.50 1356 ambiguous_trans 19 ALIGNMENT 0 Y12-10i03.p1k chr07 687 761 817387 817386 F 75 0.00 1356 ambiguous_trans 25 ALIGNMENT 0 Y12-10i03.p1k chr06 62 429 158408 158407 F 368 0.00 1356 ambiguous_trans_ua 23 ALIGNMENT 616 Y12-10i03.p1k chr02 14 689 226259 226935 F 676 99.11 1356 ambiguous_trans 9 ALIGNMENT 0 Y12-10i03.p1k chr07 710 761 541689 541688 F 52 0.00 1356 ambiguous_trans 12 ALIGNMENT 0 Y12-10i03.p1k chr06 642 641 137906 143869 F 0 0.00 1356 ambiguous_trans 28 ALIGNMENT 0 Y12-10i03.p1k chr16 377 62 850509 850508 C 316 0.00 1356 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-10i03.p1k chr13 761 690 357025 357024 C 72 0.00 1356 ambiguous_trans 8 ALIGNMENT 23 Y12-10i03.p1k chr16 535 378 850353 850508 C 158 74.68 1356 ambiguous_trans_ua 26 ALIGNMENT 643 Y12-10i03.p1k chr07 711 14 817396 818094 C 698 99.43 1356 ambiguous_trans_ua 1 ALIGNMENT 58 Y12-10i03.p1k chr07 506 686 817206 817387 F 181 81.77 1356 ambiguous_trans 25 ALIGNMENT 291 Y12-10i03.p1k chr06 15 686 143171 143843 F 672 83.78 1356 ambiguous_trans 21 ALIGNMENT 586 Y12-10i03.p1k chr10 14 710 483184 483887 F 697 96.84 1356 ambiguous_trans 11 ALIGNMENT 422 Y12-10i03.p1k chr05 694 14 443408 444094 C 681 89.57 1356 ambiguous_trans 18 ALIGNMENT 0 Y12-10i03.p1k chr06 712 761 143939 143938 F 50 0.00 1356 ambiguous_trans 28 ALIGNMENT 0 Y12-10i03.p1k chr06 687 761 143843 143842 F 75 0.00 1356 ambiguous_trans 21 ALIGNMENT 36 Y12-10i03.p1k chr06 639 711 143867 143939 F 73 86.30 1356|3,0 ambiguous_trans 28 ALIGNMENT 0 Y12-10i03.p1k chr13 761 710 372697 372696 C 52 0.00 1356 ambiguous_trans 13 ALIGNMENT 0 Y12-10i03.p1k chr06 62 380 137658 137657 F 319 0.00 1356 ambiguous_trans 28 ALIGNMENT 107 Y12-10i03.p1k chr06 376 686 137906 138216 F 311 81.67 1356 ambiguous_trans 24 ALIGNMENT 422 Y12-10i03.p1k chr05 515 14 492691 493193 C 502 96.61 1356 ambiguous_trans 17 ALIGNMENT 0 Y12-10i03.p1k chr05 405 761 443392 443391 F 357 0.00 1356 ambiguous_trans_ua 27 ALIGNMENT 576 Y12-10i03.p1k chr04 14 709 1100985 1101687 F 696 96.41 1356 ambiguous_trans 14 ALIGNMENT 639 Y12-10i03.p1k chr02 14 710 264796 265493 F 697 99.28 1356 ambiguous_trans 2 ALIGNMENT 0 Y12-10i03.p1k chr01 761 690 160260 160259 C 72 0.00 1356 ambiguous_trans 19 ALIGNMENT 488 Y12-10i03.p1k chr15 14 689 122925 123607 F 676 92.90 1356 ambiguous_trans 16 ALIGNMENT 607 Y12-10i03.p1k chr14 689 14 96630 97306 C 676 98.67 1356 ambiguous_trans 10 ALIGNMENT 579 Y12-10i03.p1k chr13 709 14 372696 373398 C 696 96.55 1356 ambiguous_trans 13 ALIGNMENT 0 Y12-10i03.p1k chr07 761 712 817397 817396 C 50 0.00 1356 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-10i03.p1k chr05 62 376 443365 443364 F 315 0.00 1356 ambiguous_trans_ua 27 ALIGNMENT 585 Y12-10i03.p1k chr07 14 709 540987 541689 F 696 96.84 1356 ambiguous_trans 12 ALIGNMENT 0 Y12-10i03.p1k chr16 714 761 850340 850339 F 48 0.00 1356 ambiguous_trans 5 ALIGNMENT 21 Y12-10i03.p1k chr05 377 404 443365 443392 F 28 92.86 1356 ambiguous_trans_ua 27 ALIGNMENT 582 Y12-10i03.p1k chr16 14 713 849634 850340 F 700 96.57 1356 ambiguous_trans 5 ALIGNMENT 0 Y12-10i03.p1k chr15 690 761 123607 123606 F 72 0.00 1356 ambiguous_trans 16 ALIGNMENT 0 Y12-10i03.p1k chr13 710 761 190083 190082 F 52 0.00 1356 ambiguous_trans 7 ALIGNMENT 619 Y12-10i03.p1k chr13 689 14 357024 357700 C 676 99.26 1356 ambiguous_trans 8 ALIGNMENT 418 Y12-10i03.p1k chr12 689 14 475995 476676 C 676 89.50 1356 ambiguous_trans 20 ALIGNMENT 0 Y12-10i03.p1k chr16 761 690 850646 850645 C 72 0.00 1356 ambiguous_trans 15 ALIGNMENT 0 Y12-10i03.p1k chr05 761 695 443409 443408 C 67 0.00 1356 ambiguous_trans 18 ALIGNMENT 0 Y12-10i03.p1k chr07 62 505 817206 817205 F 444 0.00 1356 ambiguous_trans 25 ALIGNMENT 1012 Y12-10i04.p1k chr05 20 1204 561324 562505 F 1185 96.79 1398 accept_chi 0 ALIGNMENT 896 Y12-10i04.q1k chr06 1007 33 116071 117045 C 975 97.74 1356 accept_chi 1 ALIGNMENT 252 Y12-10i05.q1k chr13 690 1000 189752 190063 F 311 96.14 1376 reject_low 19 ALIGNMENT 0 Y12-10i05.q1k chr02 62 686 259573 259572 F 625 0.00 1376 reject_low 12 ALIGNMENT 255 Y12-10i05.q1k chr15 690 1000 600403 600714 F 311 96.46 1376 reject_low 16 ALIGNMENT 0 Y12-10i05.q1k chr03 688 62 143079 143078 C 627 0.00 1376 reject_low 23 ALIGNMENT 265 Y12-10i05.q1k chr14 1018 690 96611 96941 C 329 96.05 1376 reject_low 7 ALIGNMENT 27 Y12-10i05.q1k chr14 660 719 102520 102578 F 60 85.00 1376 reject_low 25 ALIGNMENT 0 Y12-10i05.q1k chr13 689 62 362918 362917 C 628 0.00 1376 reject_low 5 ALIGNMENT 0 Y12-10i05.q1k chr14 689 62 96942 96941 C 628 0.00 1376 reject_low 7 ALIGNMENT 255 Y12-10i05.q1k chr02 687 1000 259573 259887 F 314 96.18 1376 reject_low 12 ALIGNMENT 262 Y12-10i05.q1k chr16 690 1018 560478 560808 F 329 95.74 1376 reject_low 9 ALIGNMENT 0 Y12-10i05.q1k chr13 689 62 357336 357335 C 628 0.00 1376 reject_low 4 ALIGNMENT 252 Y12-10i05.q1k chr13 690 1000 184170 184481 F 311 96.14 1376 reject_low 18 ALIGNMENT 247 Y12-10i05.q1k chr03 1018 690 124132 124462 C 329 94.22 1376 reject_low 11 ALIGNMENT 0 Y12-10i05.q1k chr14 62 659 102520 102519 F 598 0.00 1376 reject_low 25 ALIGNMENT 86 Y12-10i05.q1k chr03 741 987 149531 149773 F 247 83.00 1376 reject_low 26 ALIGNMENT 0 Y12-10i05.q1k chr13 62 689 184170 184169 F 628 0.00 1376 reject_low 18 ALIGNMENT 42 Y12-10i05.q1k chr07 887 994 817278 817383 F 108 81.48 1376 reject_low 28 ALIGNMENT 0 Y12-10i05.q1k chr07 62 688 535214 535213 F 627 0.00 1376 reject_low 6 ALIGNMENT 264 Y12-10i05.q1k chr02 687 1011 221037 221364 F 325 96.00 1376 reject_low 10 ALIGNMENT 274 Y12-10i05.q1k chr13 1018 690 362587 362917 C 329 96.96 1376 reject_low 5 ALIGNMENT 0 Y12-10i05.q1k chr14 720 843 102578 102577 F 124 0.00 1376 reject_low 25 ALIGNMENT 0 Y12-10i05.q1k chr07 688 62 823313 823312 C 627 0.00 1376 reject_low 13 ALIGNMENT 0 Y12-10i05.q1k chr13 62 689 189752 189751 F 628 0.00 1376 reject_low 19 ALIGNMENT 72 Y12-10i05.q1k chr15 808 937 594630 594759 F 130 87.69 1376 reject_low 27 ALIGNMENT 235 Y12-10i05.q1k chr10 690 1006 472377 472700 F 317 94.01 1376 reject_low 22 ALIGNMENT 0 Y12-10i05.q1k chr02 62 686 221037 221036 F 625 0.00 1376 reject_low 10 ALIGNMENT 204 Y12-10i05.p1k chr13 785 82 759805 760508 C 704 76.70 1382 reject_low 1 ALIGNMENT 0 Y12-10i05.q1k chr14 689 62 102524 102523 C 628 0.00 1376 reject_low 8 ALIGNMENT 113 Y12-10i05.q1k chr03 1018 690 168596 168928 C 329 81.76 1376 reject_low 24 ALIGNMENT 255 Y12-10i05.q1k chr07 1000 690 817418 817729 C 311 96.78 1376 reject_low 15 ALIGNMENT 241 Y12-10i05.q1k chr03 687 994 151515 151821 F 308 94.81 1376 reject_low 21 ALIGNMENT 265 Y12-10i05.q1k chr14 1018 690 102193 102523 C 329 96.05 1376 reject_low 8 ALIGNMENT 0 Y12-10i05.q1k chr08 688 62 549639 549638 C 627 0.00 1376 reject_low 20 ALIGNMENT 0 Y12-10i05.q1k chr07 689 62 817730 817729 C 628 0.00 1376 reject_low 15 ALIGNMENT 274 Y12-10i05.q1k chr11 1018 690 517096 517426 C 329 96.96 1376 reject_low 3 ALIGNMENT 0 Y12-10i05.q1k chr09 690 843 336533 336532 F 154 0.00 1376 accept 0 ALIGNMENT 0 Y12-10i05.q1k chr07 62 886 817278 817277 F 825 0.00 1376 reject_low 28 ALIGNMENT 214 Y12-10i05.q1k chr03 960 689 142807 143078 C 272 95.22 1376 reject_low 23 ALIGNMENT 622 Y12-10i05.q1k chr09 36 689 335880 336533 F 654 99.24 1376 accept 0 ALIGNMENT 0 Y12-10i05.q1k chr03 689 62 168929 168928 C 628 0.00 1376 reject_low 24 ALIGNMENT 0 Y12-10i05.p1k chr13 81 62 760509 760508 C 20 0.00 1382 reject_low 1 ALIGNMENT 256 Y12-10i05.q1k chr15 689 1000 594820 595132 F 312 96.47 1376 reject_low 14 ALIGNMENT 995 Y12-10i05.p1k chr09 1268 21 338861 340107 C 1248 94.07 1382 accept 0 ALIGNMENT 250 Y12-10i05.q1k chr08 1000 689 549326 549638 C 312 96.15 1376 reject_low 20 ALIGNMENT 0 Y12-10i05.q1k chr03 689 62 124463 124462 C 628 0.00 1376 reject_low 11 ALIGNMENT 0 Y12-10i05.q1k chr11 689 62 517427 517426 C 628 0.00 1376 reject_low 3 ALIGNMENT 0 Y12-10i05.q1k chr03 62 740 149531 149530 F 679 0.00 1376 reject_low 26 ALIGNMENT 0 Y12-10i05.q1k chr15 62 688 594820 594819 F 627 0.00 1376 reject_low 14 ALIGNMENT 0 Y12-10i05.q1k chr08 689 62 543942 543941 C 628 0.00 1376 reject_low 17 ALIGNMENT 0 Y12-10i05.q1k chr15 62 807 594630 594629 F 746 0.00 1376 reject_low 27 ALIGNMENT 274 Y12-10i05.q1k chr13 1018 690 357005 357335 C 329 96.96 1376 reject_low 4 ALIGNMENT 0 Y12-10i05.q1k chr15 62 689 600403 600402 F 628 0.00 1376 reject_low 16 ALIGNMENT 256 Y12-10i05.q1k chr07 1000 689 823000 823312 C 312 96.79 1376 reject_low 13 ALIGNMENT 274 Y12-10i05.q1k chr02 690 1018 226624 226954 F 329 96.66 1376 reject_low 2 ALIGNMENT 0 Y12-10i05.q1k chr16 62 689 560478 560477 F 628 0.00 1376 reject_low 9 ALIGNMENT 0 Y12-10i05.q1k chr02 62 689 226624 226623 F 628 0.00 1376 reject_low 2 ALIGNMENT 0 Y12-10i05.q1k chr03 62 686 151515 151514 F 625 0.00 1376 reject_low 21 ALIGNMENT 271 Y12-10i05.q1k chr07 689 1015 535214 535542 F 327 96.64 1376 reject_low 6 ALIGNMENT 0 Y12-10i05.q1k chr10 62 689 472377 472376 F 628 0.00 1376 reject_low 22 ALIGNMENT 252 Y12-10i05.q1k chr08 1000 690 543630 543941 C 311 96.46 1376 reject_low 17 ALIGNMENT 0 Y12-10i05.p1k chr13 862 786 759806 759805 C 77 0.00 1382 reject_low 1 ALIGNMENT 132 Y12-10i06.p1k chr07 1025 728 519111 519400 C 298 85.57 1501 reject_low 5 ALIGNMENT 117 Y12-10i06.p1k chr07 786 574 519036 519247 C 213 86.38 1501 reject_low 6 ALIGNMENT 0 Y12-10i06.p1k chr07 828 62 519401 519400 C 767 0.00 1501 reject_low 9 ALIGNMENT 0 Y12-10i06.p1k chr07 778 62 519401 519400 C 717 0.00 1501 reject_low 7 ALIGNMENT 56 Y12-10i06.p1k chr07 995 829 519240 519400 C 167 82.04 1501 reject_low 9 ALIGNMENT 0 Y12-10i06.p1k chr07 573 62 519350 519349 C 512 0.00 1501 reject_low 2 ALIGNMENT 89 Y12-10i06.p1k chr07 1025 779 519162 519400 C 247 83.40 1501 reject_low 7 ALIGNMENT 0 Y12-10i06.p1k chr07 769 736 519037 519036 C 34 0.00 1501 reject_low 8 ALIGNMENT 86 Y12-10i06.p1k chr07 735 574 519036 519196 C 162 85.80 1501 reject_low 8 ALIGNMENT 849 Y12-10i06.p1k chr07 940 23 519036 519951 C 918 98.47 1501 accept 0 ALIGNMENT 186 Y12-10i06.p1k chr07 1021 676 519064 519400 C 346 88.44 1501 reject_low 3 ALIGNMENT 865 Y12-10i06.q1k chr07 30 1081 513610 514657 F 1052 95.25 1430 accept 0 ALIGNMENT 0 Y12-10i06.p1k chr07 573 62 519248 519247 C 512 0.00 1501 reject_low 6 ALIGNMENT 0 Y12-10i06.p1k chr07 573 62 519299 519298 C 512 0.00 1501 reject_low 4 ALIGNMENT 0 Y12-10i06.p1k chr07 727 62 519401 519400 C 666 0.00 1501 reject_low 5 ALIGNMENT 224 Y12-10i06.p1k chr07 985 625 519045 519400 C 361 90.03 1501 reject_low 1 ALIGNMENT 205 Y12-10i06.p1k chr07 887 574 519036 519349 C 314 90.13 1501 reject_low 2 ALIGNMENT 172 Y12-10i06.p1k chr07 836 574 519036 519298 C 263 90.11 1501 reject_low 4 ALIGNMENT 0 Y12-10i06.p1k chr07 573 62 519197 519196 C 512 0.00 1501 reject_low 8 ALIGNMENT 0 Y12-10i06.p1k chr07 675 62 519401 519400 C 614 0.00 1501 reject_low 3 ALIGNMENT 0 Y12-10i06.p1k chr07 624 62 519401 519400 C 563 0.00 1501 reject_low 1 ALIGNMENT 782 Y12-10i07.q1k chr14 962 37 180444 181369 C 926 96.44 1429 accept 0 ALIGNMENT 948 Y12-10i07.p1k chr14 14 1162 176007 177162 F 1149 96.17 1424 accept 0 ALIGNMENT 903 Y12-10i08.q1k chr12 1052 31 460763 461776 C 1022 96.87 1461 accept 0 ALIGNMENT 0 Y12-10i08.q1k chr12 94 62 490544 490543 C 33 0.00 1461 reject_low 3 ALIGNMENT 761 Y12-10i08.q1k chr12 884 95 489754 490543 C 790 98.99 1461 reject_low 3 ALIGNMENT 957 Y12-10i08.p1k chr12 15 1088 456959 458051 F 1074 97.21 1365 accept 0 ALIGNMENT 957 Y12-10i08.p1k chr12 15 1088 466096 467188 F 1074 97.21 1365 reject_low 1 ALIGNMENT 903 Y12-10i08.q1k chr12 1052 31 451626 452639 C 1022 96.87 1461 reject_low 2 ALIGNMENT 0 Y12-10i09.q1k chr04 62 799 945362 945361 F 738 0.00 1474 reject_low 2 ALIGNMENT 70 Y12-10i09.q1k chr04 938 829 434597 434707 C 110 90.91 1474 reject_low 1 ALIGNMENT 1047 Y12-10i09.p1k chr07 1260 18 330704 331943 C 1243 95.90 1422 accept 0 ALIGNMENT 0 Y12-10i09.q1k chr07 62 851 793309 793308 F 790 0.00 1474 reject_low 3 ALIGNMENT 33 Y12-10i09.q1k chr07 852 904 793309 793361 F 53 90.57 1474 reject_low 3 ALIGNMENT 0 Y12-10i09.q1k chr04 828 62 434708 434707 C 767 0.00 1474 reject_low 1 ALIGNMENT 871 Y12-10i09.q1k chr07 34 1075 327158 328192 F 1042 96.35 1474 accept 0 ALIGNMENT 64 Y12-10i09.q1k chr04 800 893 945362 945455 F 94 91.49 1474 reject_low 2 ALIGNMENT 572 Y12-10i10.p1k chr10 12 886 556489 557352 F 875 90.17 1410 accept 0 ALIGNMENT 744 Y12-10i11.q1k chr04 851 30 469256 470077 C 822 97.81 1437 accept 0 ALIGNMENT 863 Y12-10i11.p1k chr04 17 1093 465051 466130 F 1077 94.43 1426 accept 0 ALIGNMENT 21 Y12-10i12.q1k chr07 369 319 467706 467756 C 51 92.16 1415 reject_low 3 ALIGNMENT 0 Y12-10i12.q1k chr05 293 62 143020 143019 C 232 0.00 1415 reject_low 2 ALIGNMENT 687 Y12-10i12.q1k chr12 34 847 700925 701734 F 814 96.56 1415 accept 0 ALIGNMENT 0 Y12-10i12.q1k chr16 62 290 650467 650466 F 229 0.00 1415 reject_low 1 ALIGNMENT 0 Y12-10i12.q1k chr07 710 370 467707 467706 C 341 0.00 1415 reject_low 3 ALIGNMENT 29 Y12-10i12.q1k chr05 374 294 142939 143019 C 81 88.89 1415 reject_low 2 ALIGNMENT 0 Y12-10i12.q1k chr16 387 710 650562 650561 F 324 0.00 1415 reject_low 1 ALIGNMENT 0 Y12-10i12.q1k chr07 318 62 467757 467756 C 257 0.00 1415 reject_low 3 ALIGNMENT 36 Y12-10i12.q1k chr16 291 386 650467 650562 F 96 88.54 1415 reject_low 1 ALIGNMENT 1019 Y12-10i12.p1k chr12 1231 15 704457 705693 C 1217 95.56 1395 accept 0 ALIGNMENT 0 Y12-10i12.q1k chr05 710 375 142940 142939 C 336 0.00 1415 reject_low 2 ALIGNMENT 571 Y12-10i13.q1k chr08 30 695 107959 108624 F 666 96.70 1491 accept 0 ALIGNMENT 985 Y12-10i13.p1k chr08 1188 22 111094 112279 C 1167 96.23 1350 accept 0 ALIGNMENT 0 Y12-10i14.p1k chr16 156 881 819607 819606 F 726 0.00 1391 reject_low 6 ALIGNMENT 0 Y12-10i14.p1k chr07 553 62 739640 739639 C 492 0.00 1391 reject_low 1 ALIGNMENT 79 Y12-10i14.p1k chr14 73 156 602313 602395 F 84 98.81 1391 reject_low 8 ALIGNMENT 79 Y12-10i14.p1k chr14 156 73 569859 569941 C 84 98.81 1391 reject_low 7 ALIGNMENT 937 Y12-10i14.q1k chr07 1157 37 742884 744016 C 1121 96.16 1410 accept 0 ALIGNMENT 80 Y12-10i14.p1k chr16 73 155 819525 819607 F 83 98.80 1391 reject_low 6 ALIGNMENT 80 Y12-10i14.p1k chr05 157 66 443187 443278 C 92 95.65 1391 reject_low 2 ALIGNMENT 25 Y12-10i14.p1k chr07 581 554 739612 739639 C 28 96.43 1391 reject_low 1 ALIGNMENT 0 Y12-10i14.p1k chr14 881 157 569860 569859 C 725 0.00 1391 reject_low 7 ALIGNMENT 0 Y12-10i14.p1k chr02 154 881 197577 197576 F 728 0.00 1391 reject_low 9 ALIGNMENT 77 Y12-10i14.p1k chr05 154 72 551272 551354 C 83 97.59 1391 reject_low 11 ALIGNMENT 80 Y12-10i14.p1k chr04 156 68 667992 668080 C 89 96.63 1391 reject_low 3 ALIGNMENT 0 Y12-10i14.p1k chr12 881 157 1052059 1052058 C 725 0.00 1391 reject_low 10 ALIGNMENT 950 Y12-10i14.p1k chr07 24 1217 739076 740268 F 1194 94.14 1391 accept 0 ALIGNMENT 0 Y12-10i14.p1k chr07 881 582 739613 739612 C 300 0.00 1391 reject_low 1 ALIGNMENT 77 Y12-10i14.p1k chr09 155 73 183428 183510 C 83 97.59 1391 reject_low 12 ALIGNMENT 79 Y12-10i14.p1k chr02 72 153 197496 197577 F 82 98.78 1391 reject_low 9 ALIGNMENT 80 Y12-10i14.p1k chr12 73 155 734804 734886 F 83 98.80 1391 reject_low 5 ALIGNMENT 82 Y12-10i14.p1k chr16 154 73 880284 880365 C 82 100.00 1391 reject_low 4 ALIGNMENT 0 Y12-10i14.p1k chr05 881 158 443188 443187 C 724 0.00 1391 reject_low 2 ALIGNMENT 0 Y12-10i14.p1k chr09 156 881 210744 210743 F 726 0.00 1391 reject_low 13 ALIGNMENT 0 Y12-10i14.p1k chr12 156 881 734886 734885 F 726 0.00 1391 reject_low 5 ALIGNMENT 0 Y12-10i14.p1k chr09 881 156 183429 183428 C 726 0.00 1391 reject_low 12 ALIGNMENT 0 Y12-10i14.p1k chr04 881 157 667993 667992 C 725 0.00 1391 reject_low 3 ALIGNMENT 77 Y12-10i14.p1k chr12 156 73 1052058 1052141 C 84 97.62 1391 reject_low 10 ALIGNMENT 0 Y12-10i14.p1k chr05 881 155 551273 551272 C 727 0.00 1391 reject_low 11 ALIGNMENT 77 Y12-10i14.p1k chr09 73 155 210662 210744 F 83 97.59 1391 reject_low 13 ALIGNMENT 0 Y12-10i14.p1k chr16 881 155 880285 880284 C 727 0.00 1391 reject_low 4 ALIGNMENT 0 Y12-10i14.p1k chr14 157 881 602395 602394 F 725 0.00 1391 reject_low 8 ALIGNMENT 713 Y12-10i15.q1k chr07 34 834 92648 93449 F 801 96.63 1395 accept 0 ALIGNMENT 990 Y12-10i15.p1k chr07 1190 19 97158 98331 C 1172 95.48 1341 accept 0 ALIGNMENT 581 Y12-10i16.q1k chr12 32 831 459853 460689 F 800 92.75 1425 accept_chi 1 ALIGNMENT 0 Y12-10i16.q1k chr12 62 697 451419 451418 F 636 0.00 1425 reject_low 2 ALIGNMENT 965 Y12-10i16.p1k chr15 1108 17 601751 602844 C 1092 97.71 1380 accept_chi 0 ALIGNMENT 88 Y12-10i16.q1k chr12 698 831 451419 451552 F 134 89.55 1425 reject_low 2 ALIGNMENT 940 Y12-10i17.q1k chr16 34 1113 422498 423585 F 1080 96.76 1354 accept 0 ALIGNMENT 1015 Y12-10i17.p1k chr16 1157 16 427832 428983 C 1142 97.72 1312 accept 0 ALIGNMENT 856 Y12-10i18.q1k chr14 29 993 688834 689806 F 965 96.99 1328 accept 0 ALIGNMENT 915 Y12-10i18.p1k chr14 1116 24 693860 694960 C 1093 95.15 1403 accept 0 ALIGNMENT 335 Y12-10i19.q1k chr04 1200 640 16761 17314 C 561 88.06 1400 reject_low 3 ALIGNMENT 0 Y12-10i19.q1k chr15 806 365 1718 1717 C 442 0.00 1400 reject_low 5 ALIGNMENT 356 Y12-10i19.q1k chr06 1200 640 13486 14039 C 561 89.30 1400 reject_low 1 ALIGNMENT 955 Y12-10i19.q1k chr14 1164 36 15426 16546 C 1129 96.01 1400 accept 0 ALIGNMENT 217 Y12-10i19.q1k chr04 442 36 17596 18002 C 407 85.01 1400 reject_low 3 ALIGNMENT 0 Y12-10i19.q1k chr04 639 443 17315 17595 C 197 0.00 1400 reject_low 3 ALIGNMENT 947 Y12-10i19.p1k chr14 54 1287 10829 12078 F 1234 93.44 1374 accept 0 ALIGNMENT 214 Y12-10i19.q1k chr06 442 36 14324 14730 C 407 84.77 1400 reject_low 1 ALIGNMENT 0 Y12-10i19.q1k chr06 639 443 14040 14323 C 197 0.00 1400 reject_low 1 ALIGNMENT 194 Y12-10i19.q1k chr10 36 453 727758 728176 F 418 82.78 1400 reject_low 2 ALIGNMENT 149 Y12-10i19.q1k chr03 36 364 314579 314907 F 329 82.67 1400 reject_low 4 ALIGNMENT 143 Y12-10i19.q1k chr15 364 36 1717 2045 C 329 82.07 1400 reject_low 5 ALIGNMENT 939 Y12-10i19.p1k chr06 54 1177 8922 10050 F 1124 95.37 1374 reject_low 1 ALIGNMENT 0 Y12-10i19.q1k chr03 365 806 314907 314906 F 442 0.00 1400 reject_low 4 ALIGNMENT 0 Y12-10i19.q1k chr10 454 558 728177 728319 F 105 0.00 1400 reject_low 2 ALIGNMENT 442 Y12-10i19.q1k chr10 559 1181 728320 728934 F 623 91.81 1400 reject_low 2 ALIGNMENT 927 Y12-10i20.q1k chr04 1152 40 579697 580812 C 1113 95.69 1356 accept 0 ALIGNMENT 954 Y12-10i20.p1k chr04 13 1102 574721 575814 F 1090 96.88 1373 accept 0 ALIGNMENT 0 Y12-10i21.q1k chr02 150 151 767632 767674 C 0 0.00 1364 accept 0 ALIGNMENT 104 Y12-10i21.q1k chr02 155 33 767670 767792 C 123 95.93 1364|5,0 accept 0 ALIGNMENT 1056 Y12-10i21.p1k chr02 19 1248 762698 763931 F 1230 96.10 1316 accept 0 ALIGNMENT 785 Y12-10i21.q1k chr02 1097 145 766695 767637 C 953 95.59 1364|0,6 accept 0 ALIGNMENT 735 Y12-10i23.q1k chr10 904 34 103358 104217 C 871 96.44 1419 accept 0 ALIGNMENT 1005 Y12-10i23.p1k chr10 18 1124 100032 101127 F 1107 98.10 1331 accept 0 ALIGNMENT 0 Y12-10i24.p1k chr07 62 437 423987 423986 F 376 0.00 1298 reject_low 1 ALIGNMENT 601 Y12-10i24.q1k chr07 790 38 212560 213307 C 753 94.02 1436 accept 0 ALIGNMENT 0 Y12-10i24.p1k chr07 814 863 424362 424361 F 50 0.00 1298 reject_low 1 ALIGNMENT 118 Y12-10i24.p1k chr07 438 813 423987 424362 F 376 77.93 1298 reject_low 1 ALIGNMENT 909 Y12-10i24.p1k chr07 18 1225 208627 209833 F 1208 93.54 1298 accept 0 ALIGNMENT 772 Y12-10j01.p1k chr02 14 886 488953 489817 F 873 97.14 1490 accept 0 ALIGNMENT 801 Y12-10j01.q1k chr02 928 27 492939 493843 C 902 97.01 1424 accept 0 ALIGNMENT 0 Y12-10j02.p1k chr02 62 132 350830 350829 F 71 0.00 1425 reject_low 8 ALIGNMENT 0 Y12-10j02.p1k chr04 62 132 520973 520972 F 71 0.00 1425 reject_low 6 ALIGNMENT 0 Y12-10j02.p1k chr04 506 209 802720 802719 C 298 0.00 1425 reject_low 1 ALIGNMENT 0 Y12-10j02.p1k chr08 208 506 134391 134390 F 299 0.00 1425 reject_low 3 ALIGNMENT 561 Y12-10j02.p1k chr04 864 112 644490 645232 C 753 93.36 1425 accept 0 ALIGNMENT 62 Y12-10j02.p1k chr04 208 133 802719 802792 C 76 96.05 1425 reject_low 1 ALIGNMENT 0 Y12-10j02.p1k chr05 62 132 250290 250289 F 71 0.00 1425 reject_low 5 ALIGNMENT 53 Y12-10j02.p1k chr02 133 201 350830 350896 F 69 94.20 1425 reject_low 8 ALIGNMENT 0 Y12-10j02.p1k chr05 132 62 131149 131148 C 71 0.00 1425 reject_low 7 ALIGNMENT 0 Y12-10j02.p1k chr04 111 62 645233 645232 C 50 0.00 1425 accept 0 ALIGNMENT 56 Y12-10j02.p1k chr04 133 201 520973 521039 F 69 95.65 1425 reject_low 6 ALIGNMENT 0 Y12-10j02.p1k chr03 132 62 168363 168362 C 71 0.00 1425 reject_low 2 ALIGNMENT 924 Y12-10j02.q1k chr04 27 1076 640069 641118 F 1050 97.24 1404 accept 0 ALIGNMENT 0 Y12-10j02.p1k chr05 207 506 250361 250360 F 300 0.00 1425 reject_low 5 ALIGNMENT 0 Y12-10j02.p1k chr02 202 506 350896 350895 F 305 0.00 1425 reject_low 8 ALIGNMENT 0 Y12-10j02.p1k chr05 506 208 131077 131076 C 299 0.00 1425 reject_low 7 ALIGNMENT 0 Y12-10j02.p1k chr12 132 62 448718 448717 C 71 0.00 1425 reject_low 4 ALIGNMENT 0 Y12-10j02.p1k chr04 132 62 802793 802792 C 71 0.00 1425 reject_low 1 ALIGNMENT 0 Y12-10j02.p1k chr03 506 208 168291 168290 C 299 0.00 1425 reject_low 2 ALIGNMENT 57 Y12-10j02.p1k chr05 133 206 250290 250361 F 74 94.59 1425 reject_low 5 ALIGNMENT 58 Y12-10j02.p1k chr03 207 133 168290 168362 C 75 94.67 1425 reject_low 2 ALIGNMENT 0 Y12-10j02.p1k chr12 506 208 448645 448644 C 299 0.00 1425 reject_low 4 ALIGNMENT 52 Y12-10j02.p1k chr05 207 133 131076 131148 C 75 92.00 1425 reject_low 7 ALIGNMENT 0 Y12-10j02.p1k chr08 62 132 134319 134318 F 71 0.00 1425 reject_low 3 ALIGNMENT 57 Y12-10j02.p1k chr12 207 133 448644 448717 C 75 94.67 1425 reject_low 4 ALIGNMENT 58 Y12-10j02.p1k chr08 133 207 134319 134391 F 75 94.67 1425 reject_low 3 ALIGNMENT 0 Y12-10j02.p1k chr04 202 506 521039 521038 F 305 0.00 1425 reject_low 6 ALIGNMENT 859 Y12-10j03.q1k chr07 34 1021 1047203 1048185 F 988 97.27 1408 accept_chi 1 ALIGNMENT 890 Y12-10j03.p1k chr14 1043 14 145361 146384 C 1030 96.99 1481 accept_chi 0 ALIGNMENT 620 Y12-10j05.q1k chr08 32 771 35285 36023 F 740 94.86 1445 reject_low 1 ALIGNMENT 965 Y12-10j05.p1k chr12 1148 15 50960 52105 C 1134 96.12 1394 accept 0 ALIGNMENT 777 Y12-10j05.q1k chr12 32 924 47890 48778 F 893 96.42 1445 accept 0 ALIGNMENT 985 Y12-10j06.q1k chr12 1182 29 464244 465406 C 1154 95.84 1356 accept 0 ALIGNMENT 542 Y12-10j06.p1k chr12 451 1150 451419 452128 F 700 94.29 1400 reject_low 1 ALIGNMENT 0 Y12-10j06.p1k chr12 62 450 451419 451418 F 389 0.00 1400 reject_low 1 ALIGNMENT 0 Y12-10j06.p1k chr12 62 819 489754 489753 F 758 0.00 1400 reject_low 2 ALIGNMENT 210 Y12-10j06.p1k chr12 820 1111 489754 490051 F 292 92.12 1400 reject_low 2 ALIGNMENT 845 Y12-10j06.p1k chr12 20 1150 460096 461265 F 1131 93.28 1400 accept 0 ALIGNMENT 979 Y12-10j06.q1k chr12 1128 29 455165 456269 C 1100 97.00 1356 reject_low 1 ALIGNMENT 1008 Y12-10j07.p1k chr07 11 1180 493626 494792 F 1170 96.32 1426 accept 0 ALIGNMENT 839 Y12-10j07.q1k chr07 976 33 497077 498023 C 944 97.67 1377 accept 0 ALIGNMENT 570 Y12-10j08.p1k chr12 12 725 631995 632709 F 714 94.26 1473 accept 0 ALIGNMENT 828 Y12-10j08.q1k chr12 977 35 635451 636388 C 943 96.82 1471 accept 0 ALIGNMENT 629 Y12-10j09.q1k chr02 28 737 332036 332745 F 710 97.18 1487 accept 0 ALIGNMENT 904 Y12-10j09.p1k chr02 1075 16 335829 336893 C 1060 96.23 1432 accept 0 ALIGNMENT 967 Y12-10j10.p1k chr10 1209 20 47470 48681 C 1190 94.54 1396 accept 0 ALIGNMENT 925 Y12-10j10.q1k chr10 35 1168 45498 46638 F 1134 95.77 1377 accept 0 ALIGNMENT 731 Y12-10j12.p1k chr04 1062 19 72406 73435 C 1044 92.24 1478 accept 0 ALIGNMENT 391 Y12-10j13.q1k chr12 29 525 668781 669275 F 497 94.16 1653 accept 0 ALIGNMENT 42 Y12-10j13.p1k chr15 22 99 648937 649014 F 78 84.62 1338 reject_low 1 ALIGNMENT 999 Y12-10j13.p1k chr12 1215 22 671994 673203 C 1194 96.15 1338 accept 0 ALIGNMENT 0 Y12-10j13.p1k chr15 100 893 649014 649013 F 794 0.00 1338 reject_low 1 ALIGNMENT 901 Y12-10j14.q1k chr13 1102 35 446910 447974 C 1068 96.25 1377 accept 0 ALIGNMENT 993 Y12-10j14.p1k chr13 18 1223 441709 442909 F 1206 95.61 1404 accept 0 ALIGNMENT 1018 Y12-10j18.p1k chr02 19 1227 475518 476730 F 1209 95.45 1411 accept 0 ALIGNMENT 822 Y12-10j18.q1k chr02 980 37 480187 481116 C 944 97.78 1443 accept 0 ALIGNMENT 1056 Y12-10j19.p1k chr10 18 1185 424816 425993 F 1168 97.43 1397 accept 0 ALIGNMENT 942 Y12-10j19.q1k chr10 1145 45 427918 429023 C 1101 96.73 1339 accept 0 ALIGNMENT 845 Y12-10j21.q1k chr11 30 1002 103567 104532 F 973 96.81 1375 accept 0 ALIGNMENT 1062 Y12-10j21.p1k chr11 1202 16 108177 109380 C 1187 97.39 1310 accept 0 ALIGNMENT 1079 Y12-10j22.p1k chr12 1283 17 452126 453404 C 1267 95.66 1339 reject_low 1 ALIGNMENT 0 Y12-10j22.p1k chr12 844 62 490544 490543 C 783 0.00 1339 reject_low 3 ALIGNMENT 1060 Y12-10j22.q1k chr12 34 1283 465883 467144 F 1250 95.92 1302 reject_low 2 ALIGNMENT 1063 Y12-10j22.q1k chr12 34 1294 456746 458017 F 1261 95.80 1302 accept 0 ALIGNMENT 261 Y12-10j22.p1k chr12 1283 845 490094 490543 C 439 87.70 1339 reject_low 3 ALIGNMENT 1079 Y12-10j22.p1k chr12 1283 17 461263 462541 C 1267 95.66 1339 accept 0 ALIGNMENT 1025 Y12-10j23.p1k chr14 1218 18 688928 690149 C 1201 96.09 1282 accept 0 ALIGNMENT 1022 Y12-10j23.q1k chr14 37 1299 686710 687979 F 1263 94.77 1307 accept 0 ALIGNMENT 0 Y12-10j24.q1k chr15 267 62 938120 938119 C 206 0.00 1315 reject_low 2 ALIGNMENT 26 Y12-10j24.q1k chr15 80 46 937863 937897 C 35 91.43 1315 reject_low 1 ALIGNMENT 22 Y12-10j24.q1k chr15 302 268 938085 938119 C 35 88.57 1315 reject_low 2 ALIGNMENT 33 Y12-10j24.p1k chr04 694 811 1279756 1279873 F 118 75.42 1342 reject_low 3 ALIGNMENT 0 Y12-10j24.p1k chr04 62 492 1279585 1279584 F 431 0.00 1342 reject_low 3 ALIGNMENT 22 Y12-10j24.p1k chr04 493 563 1279585 1279655 F 71 77.46 1342 reject_low 3 ALIGNMENT 0 Y12-10j24.q1k chr15 811 81 937864 937863 C 731 0.00 1315 reject_low 1 ALIGNMENT 0 Y12-10j24.p1k chr04 812 858 1279873 1279872 F 47 0.00 1342 reject_low 3 ALIGNMENT 0 Y12-10j24.q1k chr15 811 303 938086 938085 C 509 0.00 1315 reject_low 2 ALIGNMENT 895 Y12-10j24.p1k chr15 18 1126 931707 932803 F 1109 94.59 1342 accept 0 ALIGNMENT 878 Y12-10j24.q1k chr15 1119 33 937051 938132 C 1087 95.12 1315 accept 0 ALIGNMENT 0 Y12-10j24.p1k chr04 564 693 1279656 1279755 F 130 0.00 1342 reject_low 3 ALIGNMENT 1016 Y12-10k01.p1k chr16 1239 13 407483 408720 C 1227 95.60 1297 accept 0 ALIGNMENT 668 Y12-10k01.q1k chr16 27 836 403806 404611 F 810 94.57 1459 accept 0 ALIGNMENT 916 Y12-10k02.q1k chr01 1116 34 90961 92061 C 1083 95.94 1327 accept 0 ALIGNMENT 1082 Y12-10k02.p1k chr01 23 1249 86328 87565 F 1227 96.98 1309 accept 0 ALIGNMENT 969 Y12-10k03.q1k chr04 29 1154 894841 895977 F 1126 96.63 1377 accept_chi 1 ALIGNMENT 975 Y12-10k03.p1k chr02 1107 20 515862 516967 C 1088 97.61 1300 accept_chi 0 ALIGNMENT 0 Y12-10k04.p1k chr06 848 872 14039 14038 F 25 0.00 1381 accept 0 ALIGNMENT 837 Y12-10k04.p1k chr14 20 929 15114 16021 F 910 97.80 1381 reject_low 2 ALIGNMENT 0 Y12-10k04.p1k chr04 848 872 17314 17313 F 25 0.00 1381 reject_low 3 ALIGNMENT 974 Y12-10k04.p1k chr10 1189 20 728056 729229 C 1170 95.13 1381 reject_low 1 ALIGNMENT 748 Y12-10k04.p1k chr04 20 847 16486 17314 F 828 96.98 1381 reject_low 3 ALIGNMENT 778 Y12-10k04.p1k chr06 20 847 13211 14039 F 828 98.19 1381 accept 0 ALIGNMENT 918 Y12-10k04.q1k chr06 1056 37 17677 18710 C 1020 97.06 1311 accept 0 ALIGNMENT 586 Y12-10k06.q1k chr15 33 675 345252 345893 F 643 97.82 1441 accept 0 ALIGNMENT 94 Y12-10k06.p1k chr09 553 916 331569 331933 F 364 76.65 1356 reject_low 1 ALIGNMENT 0 Y12-10k06.p1k chr09 62 552 331569 331568 F 491 0.00 1356 reject_low 1 ALIGNMENT 955 Y12-10k06.p1k chr15 1112 21 349973 351082 C 1092 97.53 1356 accept 0 ALIGNMENT 1030 Y12-10k07.p1k chr07 1209 14 13762 14971 C 1196 96.49 1375 accept_chi 0 ALIGNMENT 874 Y12-10k07.q1k chr04 36 1032 754003 754984 F 997 97.09 1505 accept_chi 1 ALIGNMENT 981 Y12-10k08.p1k chr06 1157 22 52576 53710 C 1136 96.83 1425 accept 0 ALIGNMENT 936 Y12-10k08.q1k chr06 34 1195 50271 51424 F 1162 94.84 1445 accept 0 ALIGNMENT 968 Y12-10k09.p1k chr12 18 1142 463890 465034 F 1125 96.71 1351 reject_bad_break 1 ALIGNMENT 717 Y12-10k09.q1k chr12 956 105 457830 458687 C 852 95.66 1399 reject_bad_break 0 ALIGNMENT 717 Y12-10k09.q1k chr12 956 105 466967 467824 C 852 95.66 1399 reject_bad_break 1 ALIGNMENT 0 Y12-10k09.q1k chr12 104 105 458688 458669 C 0 0.00 1399 reject_bad_break 0 ALIGNMENT 0 Y12-10k09.q1k chr12 104 105 467825 467806 C 0 0.00 1399 reject_bad_break 1 ALIGNMENT 968 Y12-10k09.p1k chr12 18 1142 454753 455897 F 1125 96.71 1351 reject_bad_break 0 ALIGNMENT 62 Y12-10k09.q1k chr12 104 34 467807 467878 C 71 98.59 1399 reject_bad_break 1 ALIGNMENT 62 Y12-10k09.q1k chr12 104 34 458670 458741 C 71 98.59 1399 reject_bad_break 0 ALIGNMENT 0 Y12-10k10.p1k chr12 62 825 451419 451418 F 764 0.00 1429 reject_low 1 ALIGNMENT 0 Y12-10k10.p1k chr12 99 799 485814 485813 F 701 0.00 1429 reject_low 6 ALIGNMENT 78 Y12-10k10.p1k chr12 17 98 485732 485814 F 82 98.78 1429 reject_low 6 ALIGNMENT 109 Y12-10k10.p1k chr12 826 1183 451419 451790 F 358 80.45 1429 reject_low 1 ALIGNMENT 734 Y12-10k10.q1k chr12 863 32 454617 455443 C 832 97.00 1389 reject_low 1 ALIGNMENT 734 Y12-10k10.q1k chr12 863 32 463754 464580 C 832 97.00 1389 accept 0 ALIGNMENT 0 Y12-10k10.p1k chr12 99 799 482162 482161 F 701 0.00 1429 reject_low 5 ALIGNMENT 0 Y12-10k10.p1k chr12 114 799 489481 489480 F 686 0.00 1429 reject_low 2 ALIGNMENT 78 Y12-10k10.p1k chr12 17 98 472500 472582 F 82 98.78 1429 reject_low 4 ALIGNMENT 0 Y12-10k10.p1k chr12 99 799 472582 472581 F 701 0.00 1429 reject_low 4 ALIGNMENT 0 Y12-10k10.p1k chr12 99 799 468930 468929 F 701 0.00 1429 reject_low 3 ALIGNMENT 78 Y12-10k10.p1k chr12 17 98 468848 468930 F 82 98.78 1429 reject_low 3 ALIGNMENT 718 Y12-10k10.p1k chr12 17 1183 459711 460927 F 1167 89.46 1429 accept 0 ALIGNMENT 87 Y12-10k10.p1k chr12 17 113 489384 489481 F 97 96.91 1429 reject_low 2 ALIGNMENT 78 Y12-10k10.p1k chr12 17 98 482080 482162 F 82 98.78 1429 reject_low 5 ALIGNMENT 1023 Y12-10k12.p1k chr15 19 1146 272995 274133 F 1128 97.25 1405 accept 0 ALIGNMENT 904 Y12-10k12.q1k chr15 1121 22 276498 277611 C 1100 95.73 1387 accept 0 ALIGNMENT 392 Y12-10k13.q1k chr11 33 790 22 773 F 758 88.26 1418 reject_low 16 ALIGNMENT 0 Y12-10k13.q1k chr05 88 62 570324 570323 C 27 0.00 1418 reject_low 6 ALIGNMENT 0 Y12-10k13.q1k chr04 103 62 1525318 1525317 C 42 0.00 1418 reject_low 11 ALIGNMENT 130 Y12-10k13.q1k chr15 1082 827 1083475 1083732 C 256 85.94 1418|0,1 reject_low 2 ALIGNMENT 0 Y12-10k13.q1k chr11 819 801 665567 665566 C 19 0.00 1418 reject_low 19 ALIGNMENT 410 Y12-10k13.q1k chr02 803 34 812394 813169 C 770 88.70 1418 reject_low 12 ALIGNMENT 397 Y12-10k13.q1k chr04 33 790 110 869 F 758 88.52 1418 reject_low 14 ALIGNMENT 424 Y12-10k13.q1k chr10 790 33 744852 745601 C 758 89.18 1418 reject_low 9 ALIGNMENT 432 Y12-10k13.q1k chr12 828 33 1064274 1065071 C 796 88.57 1418 reject_low 5 ALIGNMENT 419 Y12-10k13.q1k chr03 828 34 315775 316561 C 795 88.30 1418 reject_low 7 ALIGNMENT 0 Y12-10k13.q1k chr16 828 827 7227 7409 F 0 0.00 1418 reject_low 1 ALIGNMENT 450 Y12-10k13.q1k chr02 69 818 5848 6602 F 750 90.27 1418 reject_low 4 ALIGNMENT 367 Y12-10k13.q1k chr03 33 790 325 1063 F 758 87.60 1418 reject_low 18 ALIGNMENT 920 Y12-10k13.p1k chr13 25 1205 920191 921356 F 1181 93.56 1382 accept 0 ALIGNMENT 0 Y12-10k13.q1k chr05 819 804 569616 569615 C 16 0.00 1418 reject_low 6 ALIGNMENT 0 Y12-10k13.q1k chr15 827 828 1083732 1083914 C 0 0.00 1418 reject_low 2 ALIGNMENT 0 Y12-10k13.q1k chr11 791 819 773 772 F 29 0.00 1418 reject_low 16 ALIGNMENT 398 Y12-10k13.q1k chr07 46 828 10 785 F 783 87.61 1418 reject_low 13 ALIGNMENT 912 Y12-10k13.p1k chr15 25 1133 1080377 1081473 F 1109 94.86 1382 reject_low 2 ALIGNMENT 0 Y12-10k13.q1k chr15 110 62 1084612 1084611 C 49 0.00 1418 reject_low 2 ALIGNMENT 327 Y12-10k13.q1k chr11 800 222 665566 666136 C 579 88.95 1418 reject_low 19 ALIGNMENT 906 Y12-10k13.p1k chr16 1095 25 9706 10765 C 1071 95.61 1382 reject_low 1 ALIGNMENT 450 Y12-10k13.q1k chr05 803 89 569615 570323 C 715 91.19 1418 reject_low 6 ALIGNMENT 406 Y12-10k13.q1k chr04 831 104 1524601 1525317 C 728 89.29 1418 reject_low 11 ALIGNMENT 307 Y12-10k13.q1k chr06 213 803 4920 5509 F 591 87.31 1418 reject_low 20 ALIGNMENT 0 Y12-10k13.q1k chr14 791 819 7393 7392 F 29 0.00 1418 reject_low 17 ALIGNMENT 0 Y12-10k13.q1k chr10 819 791 744853 744852 C 29 0.00 1418 reject_low 9 ALIGNMENT 0 Y12-10k13.q1k chr11 221 62 666137 666136 C 160 0.00 1418 reject_low 19 ALIGNMENT 383 Y12-10k13.q1k chr12 33 828 11311 12089 F 796 87.69 1418 reject_low 15 ALIGNMENT 386 Y12-10k13.q1k chr14 33 790 6652 7393 F 758 88.26 1418 reject_low 17 ALIGNMENT 456 Y12-10k13.q1k chr09 828 41 439061 439846 C 788 89.72 1418 reject_low 3 ALIGNMENT 0 Y12-10k13.q1k chr06 804 819 5509 5508 F 16 0.00 1418 reject_low 20 ALIGNMENT 750 Y12-10k13.q1k chr13 1174 33 923185 924328 C 1142 91.77 1418 accept 0 ALIGNMENT 379 Y12-10k13.q1k chr15 828 111 1083914 1084611 C 718 88.16 1418|1,0 reject_low 2 ALIGNMENT 381 Y12-10k13.q1k chr16 111 828 6530 7227 F 718 88.30 1418|0,1 reject_low 1 ALIGNMENT 60 Y12-10k13.q1k chr06 36 163 4788 4912 F 128 89.84 1418 reject_low 20 ALIGNMENT 425 Y12-10k13.q1k chr15 34 790 68 812 F 757 89.43 1418 reject_low 8 ALIGNMENT 0 Y12-10k13.q1k chr06 164 212 4913 4919 F 49 0.00 1418 reject_low 20 ALIGNMENT 0 Y12-10k13.q1k chr16 62 110 6530 6529 F 49 0.00 1418 reject_low 1 ALIGNMENT 0 Y12-10k13.q1k chr03 791 819 1063 1062 F 29 0.00 1418 reject_low 18 ALIGNMENT 0 Y12-10k13.q1k chr04 791 819 869 868 F 29 0.00 1418 reject_low 14 ALIGNMENT 408 Y12-10k13.q1k chr14 828 39 783274 784057 C 790 88.23 1418 reject_low 10 ALIGNMENT 0 Y12-10k13.q1k chr15 791 819 812 811 F 29 0.00 1418 reject_low 8 ALIGNMENT 124 Y12-10k13.q1k chr16 827 1065 7409 7648 F 239 86.19 1418|1,0 reject_low 1 ALIGNMENT 0 Y12-10k13.q1k chr02 819 804 812395 812394 C 16 0.00 1418 reject_low 12 ALIGNMENT 731 Y12-10k14.q1k chr12 945 30 567805 568714 C 916 94.43 1403 accept 0 ALIGNMENT 1002 Y12-10k14.p1k chr12 20 1100 564914 566005 F 1081 98.24 1353 accept 0 ALIGNMENT 1055 Y12-10k15.p1k chr12 1220 18 464381 465592 C 1203 96.43 1352 accept_chi 1 ALIGNMENT 1055 Y12-10k15.p1k chr12 1220 18 455244 456455 C 1203 96.43 1352 accept_chi 0 ALIGNMENT 969 Y12-10k15.q1k chr11 1233 36 167695 168911 C 1198 95.08 1398 accept_chi 2 ALIGNMENT 916 Y12-10k16.q1k chr15 36 1114 384090 385179 F 1079 96.11 1335 accept 0 ALIGNMENT 1039 Y12-10k16.p1k chr15 1247 23 388809 390045 C 1225 96.33 1375 accept 0 ALIGNMENT 989 Y12-10k17.p1k chr14 1212 15 444477 445671 C 1198 95.41 1345 accept 0 ALIGNMENT 365 Y12-10k17.q1k chr14 2 487 443134 443611 F 486 95.06 977 accept 0 ALIGNMENT 965 Y12-10k18.p1k chr04 1173 18 641636 642806 C 1156 95.93 1312 accept 0 ALIGNMENT 927 Y12-10k18.q1k chr04 34 1170 638003 639153 F 1137 94.90 1356 accept 0 ALIGNMENT 849 Y12-10k19.q1k chr09 1037 25 71353 72366 C 1013 95.66 1356 accept 0 ALIGNMENT 922 Y12-10k19.p1k chr09 16 1144 66423 67554 F 1129 95.93 1314 accept 0 ALIGNMENT 993 Y12-10k20.p1k chr16 1253 20 62878 64111 C 1234 95.46 1395 accept_trans 0 ALIGNMENT 915 Y12-10k20.q1k chr16 27 1078 53219 54262 F 1052 96.86 1376 accept_trans 0 ALIGNMENT 0 Y12-10k20.q1k chr15 62 312 224425 224424 F 251 0.00 1376 reject_low 1 ALIGNMENT 0 Y12-10k20.q1k chr15 818 862 224929 224928 F 45 0.00 1376 reject_low 1 ALIGNMENT 191 Y12-10k20.q1k chr15 313 817 224425 224929 F 505 79.41 1376 reject_low 1 ALIGNMENT 816 Y12-10k21.q1k chr11 25 1018 293628 294613 F 994 95.98 1371 accept 0 ALIGNMENT 1032 Y12-10k21.p1k chr11 1189 18 295755 296919 C 1172 97.18 1299 accept 0 ALIGNMENT 1026 Y12-10k23.p1k chr13 1261 19 294844 296078 C 1243 96.22 1275 accept_chi 0 ALIGNMENT 990 Y12-10k23.q1k chr01 1284 39 44616 45850 C 1246 94.62 1337 accept_chi 1 ALIGNMENT 933 Y12-10k24.p1k chr07 18 1131 346387 347513 F 1114 95.96 1267 accept 0 ALIGNMENT 936 Y12-10k24.q1k chr07 1146 37 351692 352799 C 1110 95.95 1313 accept 0 ALIGNMENT 1038 Y12-10l02.p1k chr06 15 1223 208331 209547 F 1209 96.28 1330 accept_chi 0 ALIGNMENT 965 Y12-10l02.q1k chr14 34 1156 530621 531751 F 1123 95.99 1328 accept_chi 1 ALIGNMENT 972 Y12-10l03.p1k chr11 1165 17 376514 377652 C 1149 96.61 1420 accept 0 ALIGNMENT 643 Y12-10l03.q1k chr11 32 782 372847 373599 F 751 96.14 1449 accept 0 ALIGNMENT 920 Y12-10l04.p1k chr02 13 1119 194985 196084 F 1107 95.39 1430 accept 0 ALIGNMENT 617 Y12-10l04.q1k chr02 804 32 198991 199756 C 773 94.70 1433 accept 0 ALIGNMENT 874 Y12-10l05.q1k chr08 1033 41 357201 358186 C 993 97.28 1429 accept 0 ALIGNMENT 953 Y12-10l07.q1k chr04 1149 39 294367 295477 C 1111 96.40 1437 accept 0 ALIGNMENT 998 Y12-10l07.p1k chr04 16 1126 290336 291454 F 1111 97.48 1381 accept 0 ALIGNMENT 0 Y12-10l08.q1k chr13 859 869 45976 45964 F 11 0.00 1352 reject_bad_break 0 ALIGNMENT 20 Y12-10l08.q1k chr10 852 882 11347 11377 F 31 100.00 1352 reject_low 2 ALIGNMENT 20 Y12-10l08.q1k chr03 880 845 315515 315551 C 36 97.22 1352 reject_low 1 ALIGNMENT 27 Y12-10l08.q1k chr13 870 963 45965 46056 F 94 79.79 1352 reject_bad_break 0 ALIGNMENT 0 Y12-10l08.q1k chr03 844 62 315552 315551 C 783 0.00 1352 reject_low 1 ALIGNMENT 0 Y12-10l08.q1k chr10 62 851 11347 11346 F 790 0.00 1352 reject_low 2 ALIGNMENT 982 Y12-10l08.p1k chr13 1236 13 48060 49297 C 1224 95.42 1396 reject_bad_break 0 ALIGNMENT 794 Y12-10l08.q1k chr13 36 858 45153 45975 F 823 99.39 1352 reject_bad_break 0 ALIGNMENT 994 Y12-10l09.p1k chr02 15 1165 624125 625288 F 1151 96.70 1362 accept 0 ALIGNMENT 968 Y12-10l09.q1k chr02 1242 37 627202 628413 C 1206 94.44 1404 accept 0 ALIGNMENT 1029 Y12-10l10.p1k chr16 1102 16 497733 498829 C 1087 98.62 1391 accept 0 ALIGNMENT 651 Y12-10l10.q1k chr16 31 796 494070 494831 F 766 95.69 1431 accept 0 ALIGNMENT 988 Y12-10l11.q1k chr12 1145 35 456290 457389 C 1111 97.12 1430 accept_chi 1 ALIGNMENT 988 Y12-10l11.q1k chr12 1145 35 465427 466526 C 1111 97.12 1430 accept_chi 2 ALIGNMENT 1000 Y12-10l11.p1k chr13 20 1214 414786 416000 F 1195 96.65 1421 accept_chi 0 ALIGNMENT 1021 Y12-10l12.p1k chr07 16 1216 774928 776149 F 1201 96.09 1428 accept 0 ALIGNMENT 699 Y12-10l12.q1k chr07 958 33 779658 780582 C 926 93.74 1419 accept 0 ALIGNMENT 804 Y12-10l13.q1k chr12 970 29 370954 371892 C 942 96.50 1409 accept 0 ALIGNMENT 945 Y12-10l13.p1k chr12 32 1198 367566 368745 F 1167 94.60 1351 accept 0 ALIGNMENT 958 Y12-10l14.q1k chr03 37 1119 171152 172244 F 1083 97.41 1349 accept 0 ALIGNMENT 956 Y12-10l14.p1k chr03 1157 24 175501 176646 C 1134 96.03 1378 accept 0 ALIGNMENT 912 Y12-10l15.q1k chr07 39 1187 601503 602639 F 1149 95.04 1444 accept 0 ALIGNMENT 924 Y12-10l15.p1k chr07 1090 24 606144 607223 C 1067 96.44 1310 accept 0 ALIGNMENT 1036 Y12-10l16.p1k chr04 25 1178 168383 169546 F 1154 97.66 1372 accept 0 ALIGNMENT 964 Y12-10l16.q1k chr04 1182 37 172670 173829 C 1146 95.81 1336 accept 0 ALIGNMENT 0 Y12-10l18.p1k chr15 880 913 301321 301320 F 34 0.00 1357 reject_low 8 ALIGNMENT 22 Y12-10l18.p1k chr02 877 849 650243 650271 C 29 100.00 1357 reject_low 7 ALIGNMENT 365 Y12-10l18.q1k chr01 76 733 27524 28180 F 658 85.87 1466 accept 0 ALIGNMENT 0 Y12-10l18.p1k chr05 891 913 284445 284444 F 23 0.00 1357 reject_low 4 ALIGNMENT 22 Y12-10l18.p1k chr07 890 847 69360 69404 C 44 93.18 1357 reject_low 5 ALIGNMENT 26 Y12-10l18.p1k chr05 847 890 284402 284445 F 44 95.45 1357 reject_low 4 ALIGNMENT 0 Y12-10l18.p1k chr07 846 62 69405 69404 C 785 0.00 1357 reject_low 5 ALIGNMENT 32 Y12-10l18.p1k chr02 847 889 353617 353659 F 43 100.00 1357 reject_low 2 ALIGNMENT 21 Y12-10l18.p1k chr15 852 879 301294 301321 F 28 100.00 1357 reject_low 8 ALIGNMENT 0 Y12-10l18.p1k chr12 848 62 563532 563531 C 787 0.00 1357 reject_low 6 ALIGNMENT 0 Y12-10l18.p1k chr12 913 891 563491 563490 C 23 0.00 1357 reject_low 6 ALIGNMENT 29 Y12-10l18.p1k chr10 890 851 639917 639956 C 40 100.00 1357 reject_low 3 ALIGNMENT 0 Y12-10l18.p1k chr07 913 891 69361 69360 C 23 0.00 1357 reject_low 5 ALIGNMENT 0 Y12-10l18.p1k chr02 890 913 353659 353658 F 24 0.00 1357 reject_low 2 ALIGNMENT 0 Y12-10l18.p1k chr02 848 62 650272 650271 C 787 0.00 1357 reject_low 7 ALIGNMENT 0 Y12-10l18.q1k chr08 618 418 525495 525494 C 201 0.00 1466 reject_low 1 ALIGNMENT 22 Y12-10l18.p1k chr12 890 849 563490 563531 C 42 92.86 1357 reject_low 6 ALIGNMENT 0 Y12-10l18.p1k chr05 62 846 284402 284401 F 785 0.00 1357 reject_low 4 ALIGNMENT 0 Y12-10l18.p1k chr02 913 878 650244 650243 C 36 0.00 1357 reject_low 7 ALIGNMENT 0 Y12-10l18.p1k chr10 913 891 639918 639917 C 23 0.00 1357 reject_low 3 ALIGNMENT 0 Y12-10l18.p1k chr15 62 851 301294 301293 F 790 0.00 1357 reject_low 8 ALIGNMENT 0 Y12-10l18.p1k chr02 62 846 353617 353616 F 785 0.00 1357 reject_low 2 ALIGNMENT 132 Y12-10l18.q1k chr08 417 32 525494 525880 C 386 77.20 1466 reject_low 1 ALIGNMENT 1035 Y12-10l18.p1k chr01 1207 23 31157 32346 C 1185 96.62 1357 accept 0 ALIGNMENT 0 Y12-10l18.p1k chr10 850 62 639957 639956 C 789 0.00 1357 reject_low 3 ALIGNMENT 0 Y12-10l20.p1k chr13 1155 1112 313744 313789 C 44 0.00 1371 reject_bad_break 0 ALIGNMENT 973 Y12-10l20.p1k chr13 1111 22 313790 314882 C 1090 97.34 1371 reject_bad_break 0 ALIGNMENT 944 Y12-10l20.q1k chr05 1141 36 314336 315443 C 1106 96.29 1321 accept_chi 1 ALIGNMENT 30 Y12-10l20.p1k chr13 1262 1156 313629 313743 C 107 80.37 1371 reject_bad_break 0 ALIGNMENT 881 Y12-10l21.p1k chr06 21 969 220509 221463 F 949 97.79 1268 accept 0 ALIGNMENT 654 Y12-10l21.p1k chr09 767 36 317167 317898 C 732 96.45 1268 reject_low 1 ALIGNMENT 912 Y12-10l21.q1k chr06 1139 41 225054 226156 C 1099 95.09 1334 accept 0 ALIGNMENT 0 Y12-10l21.p1k chr09 871 768 317168 317167 C 104 0.00 1268 reject_low 1 ALIGNMENT 37 Y12-10l22.q1k chr09 897 994 128584 128679 F 98 83.67 1301 accept 0 ALIGNMENT 926 Y12-10l22.p1k chr09 1131 25 131755 132866 C 1107 95.21 1322 accept 0 ALIGNMENT 0 Y12-10l22.q1k chr09 893 896 128519 128583 F 4 0.00 1301 accept 0 ALIGNMENT 779 Y12-10l22.q1k chr09 37 892 127668 128518 F 856 97.90 1301 accept 0 ALIGNMENT 899 Y12-10l23.q1k chr14 1187 36 382609 383764 C 1152 93.84 1311 accept 0 ALIGNMENT 957 Y12-10l23.p1k chr14 20 1195 379799 380990 F 1176 95.41 1286 accept 0 ALIGNMENT 1026 Y12-10l24.p1k chr12 1198 24 452297 453476 C 1175 96.17 1291 reject_low 2 ALIGNMENT 887 Y12-10l24.q1k chr12 36 1067 466096 467129 F 1032 96.22 1292 reject_low 1 ALIGNMENT 0 Y12-10l24.p1k chr12 924 62 490544 490543 C 863 0.00 1291 reject_low 3 ALIGNMENT 887 Y12-10l24.q1k chr12 36 1067 456959 457992 F 1032 96.22 1292 accept 0 ALIGNMENT 140 Y12-10l24.p1k chr12 1276 925 490184 490543 C 352 81.25 1291 reject_low 3 ALIGNMENT 1033 Y12-10l24.p1k chr12 1276 24 461353 462613 C 1253 94.57 1291 accept 0 ALIGNMENT 943 Y12-10m01.q1k chr09 31 1160 109580 110728 F 1130 95.75 1317 accept 0 ALIGNMENT 1025 Y12-10m01.p1k chr09 1194 15 112755 113939 C 1180 96.53 1297 accept 0 ALIGNMENT 543 Y12-10m02.p1k chr13 716 26 727053 727740 C 691 94.65 1449 accept 0 ALIGNMENT 848 Y12-10m02.q1k chr13 32 1014 722172 723156 F 983 96.85 1328 accept 0 ALIGNMENT 975 Y12-10m03.p1k chr16 10 1225 36107 37330 F 1216 94.98 1334 accept 0 ALIGNMENT 938 Y12-10m03.q1k chr16 1153 38 39056 40181 C 1116 95.97 1345 accept 0 ALIGNMENT 938 Y12-10m04.q1k chr15 1207 34 539970 541156 C 1174 94.72 1362 accept 0 ALIGNMENT 1055 Y12-10m04.p1k chr15 27 1293 539248 540529 F 1267 95.74 1364 accept 0 ALIGNMENT 1033 Y12-10m05.p1k chr07 15 1205 775299 776494 F 1191 96.56 1358 accept 0 ALIGNMENT 662 Y12-10m05.q1k chr07 753 6 775709 776450 C 748 97.06 1297 accept 0 ALIGNMENT 991 Y12-10m06.p1k chr01 1282 17 95269 96550 C 1266 94.23 1391 accept 0 ALIGNMENT 935 Y12-10m07.p1k chr05 1124 16 140732 141840 C 1109 96.03 1389 accept 0 ALIGNMENT 397 Y12-10m08.q1k chr16 103 848 531779 532517 F 746 85.79 1422 accept 0 ALIGNMENT 860 Y12-10m08.p1k chr16 1104 30 536800 537873 C 1075 94.98 1387 accept 0 ALIGNMENT 966 Y12-10m09.p1k chr07 1213 13 1047474 1048692 C 1201 95.17 1343 accept 0 ALIGNMENT 478 Y12-10m09.q1k chr07 28 668 1043660 1044304 F 641 92.82 1437 accept 0 ALIGNMENT 909 Y12-10m11.q1k chr13 36 1092 773879 774944 F 1057 95.74 1363 accept 0 ALIGNMENT 901 Y12-10m11.p1k chr13 1038 19 778262 779295 C 1020 97.75 1328 accept 0 ALIGNMENT 1013 Y12-10m12.p1k chr03 1222 21 21312 22528 C 1202 96.01 1425 accept 0 ALIGNMENT 786 Y12-10m12.q1k chr03 29 950 17936 18854 F 922 96.75 1345 accept 0 ALIGNMENT 1065 Y12-10m13.p1k chr16 19 1224 373198 374397 F 1206 97.26 1345 accept 0 ALIGNMENT 946 Y12-10m13.q1k chr16 1165 38 377897 379012 C 1128 95.83 1370 accept 0 ALIGNMENT 992 Y12-10m14.q1k chr02 34 1236 338827 340026 F 1203 95.01 1391 accept 0 ALIGNMENT 1041 Y12-10m14.p1k chr02 1228 21 343028 344246 C 1208 96.11 1373 accept 0 ALIGNMENT 0 Y12-10m14.p1k chr04 431 62 508878 508877 C 370 0.00 1373 reject_low 1 ALIGNMENT 224 Y12-10m14.p1k chr04 1008 432 508300 508877 C 577 80.07 1373 reject_low 1 ALIGNMENT 961 Y12-10m15.q1k chr14 33 1156 274621 275758 F 1124 96.35 1357 accept 0 ALIGNMENT 930 Y12-10m15.p1k chr14 1140 16 279339 280482 C 1125 96.09 1322 accept 0 ALIGNMENT 1041 Y12-10m18.p1k chr12 17 1216 381814 383023 F 1200 96.58 1366 accept 0 ALIGNMENT 1060 Y12-10m18.q1k chr12 1221 37 386704 387898 C 1185 97.05 1346 accept 0 ALIGNMENT 972 Y12-10m19.q1k chr11 27 1215 56031 57200 F 1189 95.71 1399 accept 0 ALIGNMENT 975 Y12-10m19.p1k chr11 1164 27 59438 60595 C 1138 96.31 1286 accept 0 ALIGNMENT 1058 Y12-10m20.q1k chr07 35 1270 913487 914725 F 1236 95.87 1371 accept 0 ALIGNMENT 964 Y12-10m20.p1k chr07 1159 24 916454 917605 C 1136 96.30 1334 accept 0 ALIGNMENT 1042 Y12-10m21.p1k chr13 16 1257 333766 335012 F 1242 95.49 1263 accept 0 ALIGNMENT 953 Y12-10m21.q1k chr13 1208 35 337302 338484 C 1174 95.66 1320 accept 0 ALIGNMENT 112 Y12-10m22.q1k chr12 37 154 452459 452575 F 118 99.15 1301 reject_low 1 ALIGNMENT 1016 Y12-10m22.p1k chr12 1198 25 494035 495224 C 1174 97.10 1297 accept 0 ALIGNMENT 840 Y12-10m22.q1k chr12 37 1055 490427 491449 F 1019 95.68 1301 accept 0 ALIGNMENT 0 Y12-10m22.q1k chr12 155 815 452575 452574 F 661 0.00 1301 reject_low 1 ALIGNMENT 112 Y12-10m22.q1k chr12 37 154 461596 461712 F 118 99.15 1301 reject_low 2 ALIGNMENT 0 Y12-10m22.q1k chr12 155 815 461712 461711 F 661 0.00 1301 reject_low 2 ALIGNMENT 1037 Y12-10m23.p1k chr05 22 1177 247258 248412 F 1156 97.84 1259 accept 0 ALIGNMENT 0 Y12-10m23.q1k chr08 1059 62 134391 134390 C 998 0.00 1319 reject_low 1 ALIGNMENT 0 Y12-10m23.p1k chr05 1178 1190 248413 248413 F 13 0.00 1259 accept 0 ALIGNMENT 27 Y12-10m23.p1k chr05 1191 1248 248414 248473 F 58 84.48 1259 accept 0 ALIGNMENT 971 Y12-10m23.q1k chr05 1155 41 250269 251377 C 1115 97.13 1319 accept 0 ALIGNMENT 41 Y12-10m23.q1k chr08 1121 1060 134330 134390 C 62 90.32 1319 reject_low 1 ALIGNMENT 781 Y12-10m24.q1k chr16 31 925 616181 617066 F 895 96.98 1386 accept 0 ALIGNMENT 995 Y12-10m24.p1k chr16 1312 22 620134 621414 C 1291 94.35 1317 accept 0 ALIGNMENT 938 Y12-10n01.q1k chr08 40 1123 346262 347362 F 1084 96.96 1327 accept 0 ALIGNMENT 971 Y12-10n01.p1k chr08 1129 12 349427 350558 C 1118 97.14 1289 accept 0 ALIGNMENT 210 Y12-10n02.p1k chr14 238 1 524730 524967 C 238 98.74 1109 reject_low 20 ALIGNMENT 0 Y12-10n02.p1k chr07 233 62 931179 931178 C 172 0.00 1109 accept 0 ALIGNMENT 63 Y12-10n02.p1k chr03 238 81 151518 151674 C 158 83.54 1109 reject_low 32 ALIGNMENT 216 Y12-10n02.p1k chr05 238 1 62142 62379 C 238 99.58 1109 reject_low 22 ALIGNMENT 219 Y12-10n02.p1k chr07 238 1 811452 811689 C 238 100.00 1109 reject_low 7 ALIGNMENT 0 Y12-10n02.p1k chr01 240 571 166164 166163 F 332 0.00 1109 reject_low 23 ALIGNMENT 0 Y12-10n02.p1k chr14 239 571 726946 726945 F 333 0.00 1109 reject_low 14 ALIGNMENT 0 Y12-10n02.p1k chr10 571 239 538018 538017 C 333 0.00 1109 reject_low 9 ALIGNMENT 0 Y12-10n02.p1k chr07 571 239 811453 811452 C 333 0.00 1109 reject_low 7 ALIGNMENT 216 Y12-10n02.p1k chr08 1 238 91858 92095 F 238 99.58 1109 reject_low 18 ALIGNMENT 0 Y12-10n02.p1k chr03 80 62 149637 149636 C 19 0.00 1109 reject_low 27 ALIGNMENT 47 Y12-10n02.p1k chr03 205 81 149513 149636 C 125 82.40 1109 reject_low 27 ALIGNMENT 77 Y12-10n02.p1k chr06 469 384 180955 181039 C 86 97.67 1109 reject_low 21 ALIGNMENT 0 Y12-10n02.p1k chr09 571 240 246217 246216 C 332 0.00 1109 reject_low 3 ALIGNMENT 219 Y12-10n02.p1k chr12 1 238 976348 976585 F 238 100.00 1109 reject_low 12 ALIGNMENT 0 Y12-10n02.p1k chr03 239 571 143077 143076 F 333 0.00 1109 reject_low 26 ALIGNMENT 78 Y12-10n02.p1k chr06 385 471 162220 162307 F 87 97.70 1109 reject_low 31 ALIGNMENT 0 Y12-10n02.p1k chr13 239 571 168681 168680 F 333 0.00 1109 reject_low 13 ALIGNMENT 0 Y12-10n02.p1k chr15 571 241 970281 970280 C 331 0.00 1109 reject_low 2 ALIGNMENT 0 Y12-10n02.p1k chr01 239 571 160575 160574 F 333 0.00 1109 reject_low 24 ALIGNMENT 216 Y12-10n02.p1k chr04 238 1 871816 872053 C 238 99.58 1109 reject_low 17 ALIGNMENT 219 Y12-10n02.p1k chr06 238 1 143535 143772 C 238 100.00 1109 reject_low 6 ALIGNMENT 0 Y12-10n02.p1k chr08 239 571 92095 92094 F 333 0.00 1109 reject_low 18 ALIGNMENT 0 Y12-10n02.p1k chr03 239 571 124462 124461 F 333 0.00 1109 reject_low 25 ALIGNMENT 62 Y12-10n02.p1k chr03 81 238 142920 143077 F 158 82.91 1109 reject_low 26 ALIGNMENT 0 Y12-10n02.p1k chr12 239 571 976585 976584 F 333 0.00 1109 reject_low 12 ALIGNMENT 0 Y12-10n02.p1k chr06 472 571 162307 162306 F 100 0.00 1109 reject_low 31 ALIGNMENT 0 Y12-10n02.p1k chr06 571 470 180956 180955 C 102 0.00 1109 reject_low 21 ALIGNMENT 76 Y12-10n02.p1k chr05 457 382 61890 61965 C 76 100.00 1109 reject_low 22 ALIGNMENT 506 Y12-10n02.p1k chr07 923 234 930500 931178 C 690 92.75 1109 accept 0 ALIGNMENT 0 Y12-10n02.p1k chr06 571 172 137719 137718 C 400 0.00 1109 reject_low 29 ALIGNMENT 219 Y12-10n02.p1k chr04 1 238 519406 519643 F 238 100.00 1109 reject_low 4 ALIGNMENT 0 Y12-10n02.p1k chr05 381 239 61966 62141 C 143 0.00 1109 reject_low 22 ALIGNMENT 62 Y12-10n02.p1k chr03 81 238 124305 124462 F 158 82.91 1109 reject_low 25 ALIGNMENT 870 Y12-10n02.q1k chr07 35 1014 926851 927844 F 980 97.76 1274 accept 0 ALIGNMENT 219 Y12-10n02.p1k chr10 238 1 538017 538254 C 238 100.00 1109 reject_low 9 ALIGNMENT 0 Y12-10n02.p1k chr06 571 203 158393 158392 C 369 0.00 1109 reject_low 30 ALIGNMENT 42 Y12-10n02.p1k chr10 88 205 537832 537948 F 118 81.36 1109 reject_low 28 ALIGNMENT 0 Y12-10n02.p1k chr08 239 571 389512 389511 F 333 0.00 1109 reject_low 8 ALIGNMENT 210 Y12-10n02.p1k chr14 238 1 519164 519401 C 238 98.74 1109 reject_low 19 ALIGNMENT 0 Y12-10n02.p1k chr06 62 80 161972 161971 F 19 0.00 1109 reject_low 31 ALIGNMENT 0 Y12-10n02.p1k chr06 239 384 162130 162219 F 146 0.00 1109 reject_low 31 ALIGNMENT 73 Y12-10n02.p1k chr03 458 386 142697 142769 C 73 100.00 1109 reject_low 32 ALIGNMENT 0 Y12-10n02.p1k chr03 80 62 151675 151674 C 19 0.00 1109 reject_low 32 ALIGNMENT 219 Y12-10n02.p1k chr05 1 246 431581 431825 F 246 99.19 1109 reject_low 1 ALIGNMENT 0 Y12-10n02.p1k chr04 239 571 645830 645829 F 333 0.00 1109 reject_low 16 ALIGNMENT 219 Y12-10n02.p1k chr10 1 238 541104 541341 F 238 100.00 1109 reject_low 10 ALIGNMENT 0 Y12-10n02.p1k chr03 385 239 142770 151517 C 147 0.00 1109 reject_low 32 ALIGNMENT 33 Y12-10n02.p1k chr06 202 81 158392 158511 C 122 79.51 1109 reject_low 30 ALIGNMENT 0 Y12-10n02.p1k chr10 239 571 541341 541340 F 333 0.00 1109 reject_low 10 ALIGNMENT 39 Y12-10n02.p1k chr06 171 81 137718 137807 C 91 84.62 1109 reject_low 29 ALIGNMENT 219 Y12-10n02.p1k chr15 240 1 970280 970519 C 240 99.58 1109 reject_low 2 ALIGNMENT 0 Y12-10n02.p1k chr03 62 80 124305 124304 F 19 0.00 1109 reject_low 25 ALIGNMENT 0 Y12-10n02.p1k chr06 571 239 143536 143535 C 333 0.00 1109 reject_low 6 ALIGNMENT 219 Y12-10n02.p1k chr08 1 238 389275 389512 F 238 100.00 1109 reject_low 8 ALIGNMENT 0 Y12-10n02.p1k chr05 247 571 431825 431824 F 325 0.00 1109 reject_low 1 ALIGNMENT 0 Y12-10n02.p1k chr06 383 62 181040 181039 C 322 0.00 1109 reject_low 21 ALIGNMENT 0 Y12-10n02.p1k chr04 571 239 871817 871816 C 333 0.00 1109 reject_low 17 ALIGNMENT 0 Y12-10n02.p1k chr05 571 458 61891 61890 C 114 0.00 1109 reject_low 22 ALIGNMENT 0 Y12-10n02.p1k chr10 62 87 537832 537831 F 26 0.00 1109 reject_low 28 ALIGNMENT 0 Y12-10n02.p1k chr10 206 571 537948 537947 F 366 0.00 1109 reject_low 28 ALIGNMENT 0 Y12-10n02.p1k chr12 571 239 941190 941189 C 333 0.00 1109 reject_low 11 ALIGNMENT 0 Y12-10n02.p1k chr04 239 571 519643 519642 F 333 0.00 1109 reject_low 4 ALIGNMENT 59 Y12-10n02.p1k chr06 81 238 161972 162129 F 158 82.28 1109 reject_low 31 ALIGNMENT 0 Y12-10n02.p1k chr14 571 239 519165 519164 C 333 0.00 1109 reject_low 19 ALIGNMENT 0 Y12-10n02.p1k chr06 571 239 137909 137908 C 333 0.00 1109 reject_low 5 ALIGNMENT 0 Y12-10n02.p1k chr06 80 62 158512 158511 C 19 0.00 1109 reject_low 30 ALIGNMENT 0 Y12-10n02.p1k chr03 571 459 142698 142697 C 113 0.00 1109 reject_low 32 ALIGNMENT 151 Y12-10n02.p1k chr01 1 238 160335 160575 F 238 90.76 1109 reject_low 24 ALIGNMENT 219 Y12-10n02.p1k chr12 238 1 941189 941426 C 238 100.00 1109 reject_low 11 ALIGNMENT 0 Y12-10n02.p1k chr14 571 239 524731 524730 C 333 0.00 1109 reject_low 20 ALIGNMENT 0 Y12-10n02.p1k chr06 80 62 137808 137807 C 19 0.00 1109 reject_low 29 ALIGNMENT 0 Y12-10n02.p1k chr03 571 206 149514 149513 C 366 0.00 1109 reject_low 27 ALIGNMENT 219 Y12-10n02.p1k chr06 238 1 137908 138145 C 238 100.00 1109 reject_low 5 ALIGNMENT 221 Y12-10n02.p1k chr09 239 1 246216 246454 C 239 100.00 1109 reject_low 3 ALIGNMENT 153 Y12-10n02.p1k chr01 1 239 165923 166164 F 239 90.79 1109 reject_low 23 ALIGNMENT 0 Y12-10n02.p1k chr03 239 571 168928 168927 F 333 0.00 1109 reject_low 15 ALIGNMENT 216 Y12-10n02.p1k chr03 1 238 168691 168928 F 238 99.58 1109 reject_low 15 ALIGNMENT 0 Y12-10n02.p1k chr03 62 80 142920 142919 F 19 0.00 1109 reject_low 26 ALIGNMENT 216 Y12-10n02.p1k chr04 1 238 645593 645830 F 238 99.58 1109 reject_low 16 ALIGNMENT 219 Y12-10n02.p1k chr14 1 238 726709 726946 F 238 100.00 1109 reject_low 14 ALIGNMENT 219 Y12-10n02.p1k chr13 1 238 168444 168681 F 238 100.00 1109 reject_low 13 ALIGNMENT 904 Y12-10n03.q1k chr12 35 1036 234956 235972 F 1002 98.30 1285 accept 0 ALIGNMENT 1025 Y12-10n03.p1k chr12 1196 15 238033 239218 C 1182 97.21 1340 accept 0 ALIGNMENT 1020 Y12-10n04.q1k chr12 36 1233 1033670 1034865 F 1198 95.91 1362 accept 0 ALIGNMENT 1029 Y12-10n04.p1k chr12 1199 14 1036799 1038000 C 1186 96.54 1360 accept 0 ALIGNMENT 944 Y12-10n05.q1k chr04 1229 37 1111479 1112696 C 1193 94.47 1382 accept 0 ALIGNMENT 1023 Y12-10n05.p1k chr04 24 1247 1108654 1109881 F 1224 95.02 1391 accept 0 ALIGNMENT 729 Y12-10n06.q1k chr12 28 980 826276 827227 F 953 93.81 1354 accept 0 ALIGNMENT 972 Y12-10n06.p1k chr12 1219 12 831167 832372 C 1208 95.36 1386 accept 0 ALIGNMENT 897 Y12-10n07.q1k chr15 1193 36 294699 295846 C 1158 94.13 1432 accept 0 ALIGNMENT 1013 Y12-10n07.p1k chr15 13 1193 289817 290995 F 1181 96.44 1390 accept 0 ALIGNMENT 20 Y12-10n09.q1k chr02 682 653 455756 455785 C 30 96.67 1437 reject_low 3 ALIGNMENT 1064 Y12-10n09.p1k chr08 1210 21 69899 71102 C 1190 97.23 1391 accept 0 ALIGNMENT 23 Y12-10n09.q1k chr04 649 678 1346522 1346551 F 30 100.00 1437 reject_low 5 ALIGNMENT 0 Y12-10n09.q1k chr04 62 648 1346522 1346521 F 587 0.00 1437 reject_low 5 ALIGNMENT 0 Y12-10n09.q1k chr07 214 62 169926 169925 C 153 0.00 1437 reject_low 1 ALIGNMENT 0 Y12-10n09.q1k chr07 556 249 169893 169892 C 308 0.00 1437 reject_low 1 ALIGNMENT 20 Y12-10n09.q1k chr15 649 674 936841 936866 F 26 100.00 1437 reject_low 6 ALIGNMENT 24 Y12-10n09.q1k chr02 677 615 780386 780448 C 63 82.54 1437 reject_low 2 ALIGNMENT 0 Y12-10n09.q1k chr02 652 62 455786 455785 C 591 0.00 1437 reject_low 3 ALIGNMENT 0 Y12-10n09.q1k chr02 614 62 780449 780448 C 553 0.00 1437 reject_low 2 ALIGNMENT 20 Y12-10n09.q1k chr08 653 682 169164 169193 F 30 96.67 1437 reject_low 4 ALIGNMENT 0 Y12-10n09.q1k chr15 62 648 936841 936840 F 587 0.00 1437 reject_low 6 ALIGNMENT 641 Y12-10n09.q1k chr08 33 897 65947 66810 F 865 92.49 1437 accept 0 ALIGNMENT 21 Y12-10n09.q1k chr07 248 215 169892 169925 C 34 97.06 1437 reject_low 1 ALIGNMENT 0 Y12-10n09.q1k chr08 62 652 169164 169163 F 591 0.00 1437 reject_low 4 ALIGNMENT 867 Y12-10n10.q1k chr05 1060 35 562694 563717 C 1026 96.49 1373 accept 0 ALIGNMENT 1028 Y12-10n10.p1k chr05 16 1178 559057 560222 F 1163 96.90 1400 accept 0 ALIGNMENT 933 Y12-10n11.p1k chr02 22 1104 726537 727633 F 1083 96.77 1367 accept 0 ALIGNMENT 932 Y12-10n11.q1k chr02 1207 35 729091 730271 C 1173 94.63 1394 accept 0 ALIGNMENT 965 Y12-10n12.p1k chr06 1062 17 115232 116280 C 1046 97.71 1444 accept 0 ALIGNMENT 793 Y12-10n12.q1k chr06 35 1040 112185 113168 F 1006 95.13 1427 accept 0 ALIGNMENT 1021 Y12-10n13.p1k chr08 14 1279 477996 479266 F 1266 94.79 1383 accept_chi 0 ALIGNMENT 730 Y12-10n13.q1k chr13 30 912 152598 153467 F 883 96.38 1466 accept_chi 1 ALIGNMENT 0 Y12-10n14.p1k chr11 62 144 162488 162487 F 83 0.00 1349 reject_low 8 ALIGNMENT 76 Y12-10n14.p1k chr11 145 223 162488 162566 F 79 98.73 1349 reject_low 8 ALIGNMENT 0 Y12-10n14.p1k chr05 885 234 138654 138653 C 652 0.00 1349 reject_low 5 ALIGNMENT 79 Y12-10n14.p1k chr07 141 222 828720 828801 F 82 98.78 1349 reject_low 7 ALIGNMENT 0 Y12-10n14.p1k chr13 223 885 747964 747963 F 663 0.00 1349 reject_low 9 ALIGNMENT 0 Y12-10n14.p1k chr10 62 136 374410 374409 F 75 0.00 1349 reject_low 2 ALIGNMENT 0 Y12-10n14.p1k chr10 234 885 374507 374506 F 652 0.00 1349 reject_low 2 ALIGNMENT 0 Y12-10n14.p1k chr11 224 885 162566 162565 F 662 0.00 1349 reject_low 8 ALIGNMENT 0 Y12-10n14.p1k chr10 136 62 355374 355373 C 75 0.00 1349 reject_low 4 ALIGNMENT 75 Y12-10n14.p1k chr05 233 141 138653 138745 C 93 93.55 1349 reject_low 5 ALIGNMENT 0 Y12-10n14.p1k chr07 62 140 828720 828719 F 79 0.00 1349 reject_low 7 ALIGNMENT 0 Y12-10n14.p1k chr07 885 223 405472 405471 C 663 0.00 1349 reject_low 6 ALIGNMENT 0 Y12-10n14.p1k chr07 148 62 736417 736416 C 87 0.00 1349 reject_low 10 ALIGNMENT 0 Y12-10n14.p1k chr13 62 144 747887 747886 F 83 0.00 1349 reject_low 9 ALIGNMENT 74 Y12-10n14.p1k chr07 222 149 736343 736416 C 74 100.00 1349 reject_low 10 ALIGNMENT 1009 Y12-10n14.p1k chr13 21 1178 131697 132862 F 1158 96.89 1349 accept 0 ALIGNMENT 87 Y12-10n14.p1k chr02 233 137 405858 405955 C 97 96.91 1349 reject_low 1 ALIGNMENT 79 Y12-10n14.p1k chr07 222 141 405471 405552 C 82 98.78 1349 reject_low 6 ALIGNMENT 0 Y12-10n14.p1k chr04 136 62 568963 568962 C 75 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-10n14.p1k chr10 885 223 355289 355288 C 663 0.00 1349 reject_low 4 ALIGNMENT 0 Y12-10n14.p1k chr05 140 62 138746 138745 C 79 0.00 1349 reject_low 5 ALIGNMENT 0 Y12-10n14.p1k chr02 136 62 405956 405955 C 75 0.00 1349 reject_low 1 ALIGNMENT 0 Y12-10n14.p1k chr07 223 885 828801 828800 F 663 0.00 1349 reject_low 7 ALIGNMENT 975 Y12-10n14.q1k chr13 1182 38 134816 135968 C 1145 96.33 1331 accept 0 ALIGNMENT 75 Y12-10n14.p1k chr13 145 222 747887 747964 F 78 98.72 1349 reject_low 9 ALIGNMENT 85 Y12-10n14.p1k chr10 222 137 355288 355373 C 86 100.00 1349 reject_low 4 ALIGNMENT 0 Y12-10n14.p1k chr04 885 223 568878 568877 C 663 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-10n14.p1k chr07 140 62 405553 405552 C 79 0.00 1349 reject_low 6 ALIGNMENT 0 Y12-10n14.p1k chr07 885 223 736344 736343 C 663 0.00 1349 reject_low 10 ALIGNMENT 0 Y12-10n14.p1k chr02 885 234 405859 405858 C 652 0.00 1349 reject_low 1 ALIGNMENT 85 Y12-10n14.p1k chr04 222 137 568877 568962 C 86 100.00 1349 reject_low 3 ALIGNMENT 87 Y12-10n14.p1k chr10 137 233 374410 374507 F 97 96.91 1349 reject_low 2 ALIGNMENT 0 Y12-10n15.p1k chr15 187 873 3180 3179 F 687 0.00 1458 reject_low 3 ALIGNMENT 0 Y12-10n15.p1k chr07 873 216 327925 327924 C 658 0.00 1458 reject_low 1 ALIGNMENT 43 Y12-10n15.p1k chr06 229 63 261286 261455 C 167 79.04 1458 reject_low 2 ALIGNMENT 932 Y12-10n15.q1k chr04 33 1114 941637 942709 F 1082 96.58 1434 accept 0 ALIGNMENT 1037 Y12-10n15.p1k chr04 1335 21 944251 945556 C 1315 94.83 1458 accept 0 ALIGNMENT 62 Y12-10n15.p1k chr07 215 43 327924 328101 C 173 82.08 1458 reject_low 1 ALIGNMENT 38 Y12-10n15.p1k chr15 64 186 3053 3180 F 123 80.49 1458 reject_low 3 ALIGNMENT 0 Y12-10n15.p1k chr06 873 230 261287 261286 C 644 0.00 1458 reject_low 2 ALIGNMENT 957 Y12-10n16.q1k chr07 35 1211 280574 281763 F 1177 95.33 1380 accept 0 ALIGNMENT 880 Y12-10n16.p1k chr07 1028 24 284700 285720 C 1005 97.11 1348 accept 0 ALIGNMENT 70 Y12-10n17.p1k chr04 610 381 768607 768836 C 230 77.39 1324 reject_low 1 ALIGNMENT 922 Y12-10n17.q1k chr04 34 1246 1067394 1068596 F 1213 94.23 1383 accept 0 ALIGNMENT 984 Y12-10n17.p1k chr04 1161 25 1071491 1072650 C 1137 96.57 1324 accept 0 ALIGNMENT 0 Y12-10n17.p1k chr04 380 62 768837 768836 C 319 0.00 1324 reject_low 1 ALIGNMENT 0 Y12-10n17.p1k chr04 881 611 768608 768607 C 271 0.00 1324 reject_low 1 ALIGNMENT 894 Y12-10n18.q1k chr04 1038 42 1267775 1268783 C 997 97.49 1292 accept 0 ALIGNMENT 963 Y12-10n18.p1k chr04 20 1163 1264419 1265580 F 1144 96.15 1333 accept 0 ALIGNMENT 1021 Y12-10n19.q1k chr02 1263 37 678609 679838 C 1227 95.44 1365 accept 0 ALIGNMENT 941 Y12-10n19.p1k chr02 33 1176 675982 677147 F 1144 95.54 1324 accept 0 ALIGNMENT 1079 Y12-10n20.p1k chr10 1278 22 112584 113855 C 1257 96.58 1356 accept 0 ALIGNMENT 727 Y12-10n20.q1k chr10 32 864 110379 111208 F 833 97.12 1390 accept 0 ALIGNMENT 1020 Y12-10n21.p1k chr02 1238 24 720574 721798 C 1215 95.72 1287 accept 0 ALIGNMENT 965 Y12-10n21.q1k chr02 30 1211 717410 718595 F 1182 95.18 1307 accept 0 ALIGNMENT 1005 Y12-10n22.p1k chr04 1146 18 177749 178884 C 1129 97.52 1324 accept 0 ALIGNMENT 811 Y12-10n22.q1k chr04 29 1056 174692 175711 F 1028 94.65 1322 accept 0 ALIGNMENT 974 Y12-10n24.q1k chr12 49 1151 451749 452862 F 1103 96.65 1257 accept 0 ALIGNMENT 0 Y12-10n24.q1k chr12 62 85 489754 489753 F 24 0.00 1257 reject_low 2 ALIGNMENT 976 Y12-10n24.p1k chr12 1260 27 454486 455720 C 1234 93.84 1323 accept 0 ALIGNMENT 761 Y12-10n24.q1k chr12 86 875 489754 490543 F 790 98.99 1257 reject_low 2 ALIGNMENT 974 Y12-10n24.q1k chr12 49 1151 460886 461999 F 1103 96.65 1257 accept 1 ALIGNMENT 976 Y12-10n24.p1k chr12 1260 27 463623 464857 C 1234 93.84 1323 accept 1 ALIGNMENT 1060 Y12-10o01.p1k chr12 1264 29 564448 565683 C 1236 96.44 1276 accept 0 ALIGNMENT 825 Y12-10o01.q1k chr12 31 1026 560427 561425 F 996 95.08 1321 accept 0 ALIGNMENT 1000 Y12-10o02.p1k chr12 1190 19 456595 457761 C 1172 96.16 1310 reject_low 1 ALIGNMENT 1011 Y12-10o02.p1k chr12 1227 19 465697 466898 C 1209 95.62 1310 accept 0 ALIGNMENT 810 Y12-10o03.p1k chr09 26 985 20259 21218 F 960 95.31 1327 reject_low 1 ALIGNMENT 32 Y12-10o03.p1k chr12 540 834 291492 291786 F 295 71.86 1327 reject_low 3 ALIGNMENT 0 Y12-10o03.p1k chr12 62 539 291492 291491 F 478 0.00 1327 reject_low 3 ALIGNMENT 783 Y12-10o03.p1k chr10 28 1036 20241 21248 F 1009 93.16 1327 accept_tel 0 ALIGNMENT 751 Y12-10o03.p1k chr15 24 985 26011 26973 F 962 93.24 1327 reject_low 2 ALIGNMENT 661 Y12-10o05.q1k chr04 29 804 1164753 1165526 F 776 96.01 1414 accept 0 ALIGNMENT 1017 Y12-10o05.p1k chr04 1204 20 1169338 1170528 C 1185 96.12 1334 accept 0 ALIGNMENT 994 Y12-10o06.p1k chr07 17 1189 911452 912635 F 1173 96.33 1354 accept_chi 0 ALIGNMENT 973 Y12-10o06.q1k chr09 1211 34 34416 35609 C 1178 95.42 1356 accept_chi 1 ALIGNMENT 983 Y12-10o07.p1k chr11 27 1260 622004 623236 F 1234 95.38 1377 accept 0 ALIGNMENT 766 Y12-10o07.q1k chr11 1124 201 626237 627172 C 924 95.89 1338 accept 0 ALIGNMENT 1007 Y12-10o09.p1k chr13 1215 17 275618 276829 C 1199 96.00 1333 accept 0 ALIGNMENT 272 Y12-10o10.q1k chr09 30 342 210331 210644 F 313 96.81 1377 reject_low 5 ALIGNMENT 273 Y12-10o10.q1k chr01 30 344 182640 182955 F 315 96.83 1377 reject_low 1 ALIGNMENT 251 Y12-10o10.q1k chr07 342 30 319426 319739 C 313 94.57 1377 reject_low 15 ALIGNMENT 0 Y12-10o10.q1k chr07 760 343 319427 319426 C 418 0.00 1377 reject_low 15 ALIGNMENT 272 Y12-10o10.q1k chr07 30 342 712236 712549 F 313 96.81 1377 reject_low 3 ALIGNMENT 0 Y12-10o10.q1k chr05 760 344 249929 249928 C 417 0.00 1377 reject_low 13 ALIGNMENT 272 Y12-10o10.q1k chr07 30 342 707225 707538 F 313 96.81 1377 reject_low 2 ALIGNMENT 250 Y12-10o10.q1k chr14 47 347 726279 726580 F 301 95.68 1377 reject_low 9 ALIGNMENT 130 Y12-10o10.q1k chr03 208 343 168929 169064 F 136 100.00 1377|3,0 reject_low 20 ALIGNMENT 250 Y12-10o10.q1k chr08 342 30 146324 146638 C 313 94.57 1377 reject_low 18 ALIGNMENT 251 Y12-10o10.q1k chr15 30 342 854299 854612 F 313 94.89 1377 reject_low 16 ALIGNMENT 253 Y12-10o10.q1k chr16 30 342 769343 769657 F 313 94.89 1377 reject_low 14 ALIGNMENT 256 Y12-10o10.q1k chr04 342 30 945949 946263 C 313 95.21 1377 reject_low 10 ALIGNMENT 256 Y12-10o10.q1k chr05 342 30 434627 434941 C 313 95.21 1377 reject_low 11 ALIGNMENT 0 Y12-10o10.q1k chr07 343 760 712549 712548 F 418 0.00 1377 reject_low 3 ALIGNMENT 0 Y12-10o10.q1k chr07 343 760 736327 736326 F 418 0.00 1377 reject_low 12 ALIGNMENT 0 Y12-10o10.q1k chr09 343 760 210644 210643 F 418 0.00 1377 reject_low 5 ALIGNMENT 0 Y12-10o10.q1k chr16 343 760 769657 769656 F 418 0.00 1377 reject_low 14 ALIGNMENT 254 Y12-10o10.q1k chr05 343 30 249928 250243 C 314 94.90 1377 reject_low 13 ALIGNMENT 0 Y12-10o10.q1k chr09 343 760 205556 205555 F 418 0.00 1377 reject_low 4 ALIGNMENT 272 Y12-10o10.q1k chr11 342 30 202290 202603 C 313 96.81 1377 reject_low 6 ALIGNMENT 0 Y12-10o10.q1k chr07 343 760 707538 707537 F 418 0.00 1377 reject_low 2 ALIGNMENT 0 Y12-10o10.q1k chr11 341 92 74619 74618 C 250 0.00 1377 accept 0 ALIGNMENT 0 Y12-10o10.q1k chr05 760 343 492435 492434 C 418 0.00 1377 reject_low 19 ALIGNMENT 256 Y12-10o10.q1k chr07 30 342 736013 736327 F 313 95.21 1377 reject_low 12 ALIGNMENT 0 Y12-10o10.q1k chr14 348 760 726580 726579 F 413 0.00 1377 reject_low 9 ALIGNMENT 0 Y12-10o10.q1k chr03 344 760 169064 169063 F 417 0.00 1377 reject_low 20 ALIGNMENT 0 Y12-10o10.q1k chr03 211 210 168593 168931 F 0 0.00 1377 reject_low 20 ALIGNMENT 0 Y12-10o10.q1k chr04 343 760 668431 668430 F 418 0.00 1377 reject_low 17 ALIGNMENT 0 Y12-10o10.q1k chr11 760 343 202291 202290 C 418 0.00 1377 reject_low 6 ALIGNMENT 269 Y12-10o10.q1k chr14 30 342 546765 547078 F 313 96.49 1377 reject_low 8 ALIGNMENT 131 Y12-10o10.q1k chr03 30 213 168410 168595 F 184 91.85 1377|0,3 reject_low 20 ALIGNMENT 0 Y12-10o10.q1k chr15 343 760 854612 854611 F 418 0.00 1377 reject_low 16 ALIGNMENT 0 Y12-10o10.q1k chr08 760 343 146325 146324 C 418 0.00 1377 reject_low 18 ALIGNMENT 262 Y12-10o10.q1k chr16 30 346 856567 856885 F 317 95.58 1377 reject_low 7 ALIGNMENT 991 Y12-10o10.p1k chr11 25 1293 70883 72167 F 1269 93.77 1378 accept 0 ALIGNMENT 0 Y12-10o10.q1k chr04 760 343 945950 945949 C 418 0.00 1377 reject_low 10 ALIGNMENT 0 Y12-10o10.q1k chr16 347 760 856885 856884 F 414 0.00 1377 reject_low 7 ALIGNMENT 0 Y12-10o10.q1k chr05 760 343 434628 434627 C 418 0.00 1377 reject_low 11 ALIGNMENT 272 Y12-10o10.q1k chr09 30 342 205243 205556 F 313 96.81 1377 reject_low 4 ALIGNMENT 0 Y12-10o10.q1k chr01 345 760 182955 182954 F 416 0.00 1377 reject_low 1 ALIGNMENT 563 Y12-10o10.q1k chr11 1120 342 73842 74618 C 779 92.30 1377 accept 0 ALIGNMENT 0 Y12-10o10.q1k chr14 343 760 547078 547077 F 418 0.00 1377 reject_low 8 ALIGNMENT 234 Y12-10o10.q1k chr05 342 87 492434 492690 C 256 98.44 1377 reject_low 19 ALIGNMENT 250 Y12-10o10.q1k chr04 30 342 668117 668431 F 313 94.57 1377 reject_low 17 ALIGNMENT 869 Y12-10o11.q1k chr12 33 1008 413024 413998 F 976 97.95 1530 accept 0 ALIGNMENT 1034 Y12-10o11.p1k chr12 1172 28 416860 418015 C 1145 97.21 1316 accept 0 ALIGNMENT 1057 Y12-10o13.p1k chr12 1217 21 380234 381426 C 1197 97.41 1321 accept 0 ALIGNMENT 231 Y12-10o13.q1k chr12 34 461 376938 377349 F 428 87.62 1898 accept 0 ALIGNMENT 0 Y12-10o14.q1k chr14 1105 1171 90544 90609 F 67 0.00 1340 accept 0 ALIGNMENT 22 Y12-10o14.q1k chr14 1172 1222 90610 90664 F 51 84.31 1340 accept 0 ALIGNMENT 944 Y12-10o14.p1k chr14 1128 18 92990 94112 C 1111 96.22 1314 accept 0 ALIGNMENT 980 Y12-10o14.q1k chr14 34 1104 89462 90543 F 1071 98.13 1340 accept 0 ALIGNMENT 836 Y12-10o15.q1k chr12 39 1019 194137 195138 F 981 96.84 1311 accept 0 ALIGNMENT 944 Y12-10o15.p1k chr12 1289 19 197061 198329 C 1271 92.29 1333 accept 0 ALIGNMENT 949 Y12-10o16.p1k chr13 24 1225 324879 326081 F 1202 94.34 1338 accept 0 ALIGNMENT 906 Y12-10o16.q1k chr13 1105 28 327681 328759 C 1078 96.38 1356 accept 0 ALIGNMENT 845 Y12-10o17.q1k chr07 35 983 756319 757273 F 949 97.37 1364 accept 0 ALIGNMENT 1039 Y12-10o17.p1k chr07 1224 19 759133 760352 C 1206 96.35 1299 accept 0 ALIGNMENT 210 Y12-10o18.p1k chr04 701 1153 1525355 1525805 F 453 86.53 1368 ambiguous_tel 25 ALIGNMENT 0 Y12-10o18.p1k chr15 62 796 1084616 1084615 F 735 0.00 1368 ambiguous_tel 27 ALIGNMENT 61 Y12-10o18.q1k chr13 716 962 372718 372968 F 247 77.33 1365 reject_low 34 ALIGNMENT 492 Y12-10o18.p1k chr07 24 635 1090330 1090943 F 612 95.10 1368 ambiguous_tel 13 ALIGNMENT 0 Y12-10o18.p1k chr07 636 847 1090943 1090942 F 212 0.00 1368 ambiguous_tel 13 ALIGNMENT 0 Y12-10o18.p1k chr13 751 62 5585 5584 C 690 0.00 1368 ambiguous_tel 24 ALIGNMENT 0 Y12-10o18.p1k chr09 847 769 4 3 C 79 0.00 1368 ambiguous_tel 1 ALIGNMENT 431 Y12-10o18.p1k chr05 551 24 2 534 C 528 95.45 1368 ambiguous_tel 19 ALIGNMENT 434 Y12-10o18.p1k chr02 567 24 2 550 C 544 94.85 1368 ambiguous_tel 17 ALIGNMENT 432 Y12-10o18.p1k chr12 24 568 1077625 1078174 F 545 94.68 1368 ambiguous_tel 18 ALIGNMENT 22 Y12-10o18.q1k chr05 911 879 138336 138368 C 33 90.91 1365 reject_low 39 ALIGNMENT 0 Y12-10o18.q1k chr07 772 62 328161 328160 C 711 0.00 1365 reject_low 29 ALIGNMENT 0 Y12-10o18.p1k chr05 62 796 570325 570324 F 735 0.00 1368 ambiguous_tel 20 ALIGNMENT 39 Y12-10o18.q1k chr05 840 716 138407 138531 C 125 78.40 1365 reject_low 39 ALIGNMENT 61 Y12-10o18.q1k chr15 962 716 123355 123605 C 247 77.33 1365 reject_low 35 ALIGNMENT 0 Y12-10o18.q1k chr03 715 62 169518 169517 C 654 0.00 1365 reject_low 32 ALIGNMENT 522 Y12-10o18.p1k chr13 748 24 2 731 C 725 92.97 1368 ambiguous_tel 4 ALIGNMENT 208 Y12-10o18.p1k chr13 1153 752 5182 5584 C 402 87.06 1368 ambiguous_tel 24 ALIGNMENT 0 Y12-10o18.q1k chr16 62 715 856235 856234 F 654 0.00 1365 reject_low 36 ALIGNMENT 0 Y12-10o18.p1k chr05 971 62 6339 6338 C 910 0.00 1368 ambiguous_tel 30 ALIGNMENT 0 Y12-10o18.p1k chr05 636 847 576866 576865 F 212 0.00 1368 ambiguous_tel 12 ALIGNMENT 0 Y12-10o18.p1k chr12 569 847 1078174 1078173 F 279 0.00 1368 ambiguous_tel 18 ALIGNMENT 0 Y12-10o18.q1k chr13 62 715 372718 372717 F 654 0.00 1365 reject_low 34 ALIGNMENT 288 Y12-10o18.p1k chr12 694 1155 1065050 1065502 F 462 91.56 1368 ambiguous_tel 14 ALIGNMENT 622 Y12-10o18.p1k chr10 750 24 5 733 C 727 97.11 1368 ambiguous_tel 2 ALIGNMENT 1002 Y12-10o18.q1k chr11 39 1199 218382 219542 F 1161 96.90 1365 accept 0 ALIGNMENT 497 Y12-10o18.p1k chr12 773 24 2 747 C 750 91.87 1368 ambiguous_tel 7 ALIGNMENT 0 Y12-10o18.p1k chr12 847 758 5665 5664 C 90 0.00 1368 ambiguous_tel 5 ALIGNMENT 0 Y12-10o18.p1k chr12 729 62 5725 5724 C 668 0.00 1368 ambiguous_tel 31 ALIGNMENT 93 Y12-10o18.p1k chr05 1186 972 6137 6338 C 215 85.58 1368 ambiguous_tel 30 ALIGNMENT 0 Y12-10o18.q1k chr05 715 62 138532 138531 C 654 0.00 1365 reject_low 39 ALIGNMENT 58 Y12-10o18.q1k chr12 716 962 220691 220941 F 247 76.92 1365 reject_low 37 ALIGNMENT 624 Y12-10o18.p1k chr09 768 24 3 750 C 745 96.78 1368 ambiguous_tel 1 ALIGNMENT 511 Y12-10o18.p1k chr12 24 703 1070962 1071651 F 680 93.53 1368 ambiguous_tel 9 ALIGNMENT 0 Y12-10o18.p1k chr16 651 847 948062 948061 F 197 0.00 1368 ambiguous_tel 11 ALIGNMENT 0 Y12-10o18.q1k chr05 878 841 138369 138406 C 38 0.00 1365 reject_low 39 ALIGNMENT 498 Y12-10o18.p1k chr14 654 24 2 638 C 631 94.61 1368 ambiguous_tel 10 ALIGNMENT 0 Y12-10o18.q1k chr12 62 715 220691 220690 F 654 0.00 1365 reject_low 37 ALIGNMENT 0 Y12-10o18.p1k chr02 847 568 3 2 C 280 0.00 1368 ambiguous_tel 17 ALIGNMENT 556 Y12-10o18.p1k chr08 24 796 561777 562556 F 773 93.14 1368 ambiguous_tel 3 ALIGNMENT 0 Y12-10o18.p1k chr04 502 847 1531908 1531907 F 346 0.00 1368 ambiguous_tel 22 ALIGNMENT 213 Y12-10o18.p1k chr06 1153 696 4329 4781 C 458 86.90 1368 ambiguous_tel 23 ALIGNMENT 238 Y12-10o18.p1k chr08 694 1155 556891 557343 F 462 87.88 1368 ambiguous_tel 21 ALIGNMENT 60 Y12-10o18.q1k chr07 912 716 535879 536079 C 197 78.68 1365 reject_low 38 ALIGNMENT 0 Y12-10o18.p1k chr13 847 749 3 2 C 99 0.00 1368 ambiguous_tel 4 ALIGNMENT 0 Y12-10o18.p1k chr08 797 847 562556 562555 F 51 0.00 1368 ambiguous_tel 3 ALIGNMENT 204 Y12-10o18.p1k chr10 1186 845 6605 6931 C 342 90.06 1368 ambiguous_tel 15 ALIGNMENT 130 Y12-10o18.p1k chr12 964 730 5485 5724 C 235 88.51 1368 ambiguous_tel 31 ALIGNMENT 511 Y12-10o18.p1k chr12 757 24 5664 6390 C 734 92.64 1368 ambiguous_tel 5 ALIGNMENT 0 Y12-10o18.p1k chr15 714 847 1091287 1091286 F 134 0.00 1368 ambiguous_tel 8 ALIGNMENT 182 Y12-10o18.p1k chr07 797 1153 1084352 1084706 F 357 86.55 1368 ambiguous_tel 26 ALIGNMENT 0 Y12-10o18.p1k chr04 62 700 1525355 1525354 F 639 0.00 1368 ambiguous_tel 25 ALIGNMENT 61 Y12-10o18.q1k chr04 962 716 1101415 1101665 C 247 77.33 1365 reject_low 33 ALIGNMENT 0 Y12-10o18.p1k chr10 847 751 6 5 C 97 0.00 1368 ambiguous_tel 2 ALIGNMENT 0 Y12-10o18.q1k chr07 715 62 536080 536079 C 654 0.00 1365 reject_low 38 ALIGNMENT 0 Y12-10o18.p1k chr12 62 693 1065050 1065049 F 632 0.00 1368 ambiguous_tel 14 ALIGNMENT 0 Y12-10o18.p1k chr12 847 774 3 2 C 74 0.00 1368 ambiguous_tel 7 ALIGNMENT 0 Y12-10o18.q1k chr04 715 62 1101666 1101665 C 654 0.00 1365 reject_low 33 ALIGNMENT 182 Y12-10o18.p1k chr15 797 1153 1084616 1084970 F 357 86.55 1368 ambiguous_tel 27 ALIGNMENT 61 Y12-10o18.q1k chr03 962 716 169267 169517 C 247 77.33 1365 reject_low 32 ALIGNMENT 0 Y12-10o18.p1k chr12 704 787 1071652 1071643 F 84 0.00 1368 ambiguous_tel 9 ALIGNMENT 515 Y12-10o18.p1k chr15 24 713 1090589 1091287 F 690 93.48 1368 ambiguous_tel 8 ALIGNMENT 0 Y12-10o18.q1k chr15 715 62 123606 123605 C 654 0.00 1365 reject_low 35 ALIGNMENT 66 Y12-10o18.q1k chr07 989 773 327946 328160 C 217 79.26 1365 reject_low 29 ALIGNMENT 0 Y12-10o18.p1k chr08 847 727 6 5 C 121 0.00 1368 ambiguous_tel 6 ALIGNMENT 182 Y12-10o18.p1k chr16 1153 797 6171 6525 C 357 86.55 1368 ambiguous_tel 28 ALIGNMENT 0 Y12-10o18.p1k chr16 796 62 6526 6525 C 735 0.00 1368 ambiguous_tel 28 ALIGNMENT 441 Y12-10o18.p1k chr16 567 24 2 547 C 544 95.22 1368 ambiguous_tel 16 ALIGNMENT 0 Y12-10o18.p1k chr06 695 62 4782 4781 C 634 0.00 1368 ambiguous_tel 23 ALIGNMENT 0 Y12-10o18.p1k chr16 847 568 3 2 C 280 0.00 1368 ambiguous_tel 16 ALIGNMENT 61 Y12-10o18.q1k chr16 716 962 856235 856485 F 247 77.33 1365 reject_low 36 ALIGNMENT 0 Y12-10o18.p1k chr14 847 655 3 2 C 193 0.00 1368 ambiguous_tel 10 ALIGNMENT 515 Y12-10o18.p1k chr08 726 24 5 715 C 703 93.17 1368 ambiguous_tel 6 ALIGNMENT 396 Y12-10o18.p1k chr04 24 501 1531424 1531908 F 478 95.82 1368 ambiguous_tel 22 ALIGNMENT 0 Y12-10o18.p1k chr05 847 552 3 2 C 296 0.00 1368 ambiguous_tel 19 ALIGNMENT 186 Y12-10o18.p1k chr12 788 1153 1071644 1072006 F 366 86.61 1368 ambiguous_tel 9 ALIGNMENT 0 Y12-10o18.p1k chr07 62 796 1084352 1084351 F 735 0.00 1368 ambiguous_tel 26 ALIGNMENT 496 Y12-10o18.p1k chr16 24 650 947430 948062 F 627 94.74 1368 ambiguous_tel 11 ALIGNMENT 492 Y12-10o18.p1k chr05 24 635 576253 576866 F 612 95.10 1368 ambiguous_tel 12 ALIGNMENT 0 Y12-10o18.p1k chr08 62 693 556891 556890 F 632 0.00 1368 ambiguous_tel 21 ALIGNMENT 249 Y12-10o18.p1k chr05 797 1155 570325 570672 F 359 92.48 1368 ambiguous_tel 20 ALIGNMENT 0 Y12-10o18.p1k chr10 844 62 6932 6931 C 783 0.00 1368 ambiguous_tel 15 ALIGNMENT 1016 Y12-10o19.p1k chr10 17 1212 441575 442779 F 1196 96.57 1291 accept 0 ALIGNMENT 806 Y12-10o19.q1k chr10 1386 256 446166 447299 C 1131 92.04 1421 accept 0 ALIGNMENT 954 Y12-10o20.q1k chr04 1157 35 251487 252620 C 1123 96.44 1310 accept 0 ALIGNMENT 933 Y12-10o20.p1k chr04 27 1255 247531 248772 F 1229 93.73 1313 accept 0 ALIGNMENT 984 Y12-10o21.q1k chr13 1197 34 88333 89507 C 1164 96.74 1301 accept 0 ALIGNMENT 914 Y12-10o21.p1k chr13 23 1081 83991 85068 F 1059 97.92 1256 accept 0 ALIGNMENT 71 Y12-10o22.p1k chr04 1075 934 307182 307335 C 142 85.92 1309 reject_low 1 ALIGNMENT 938 Y12-10o22.p1k chr13 25 1075 551583 552646 F 1051 97.62 1309 accept 0 ALIGNMENT 1006 Y12-10o22.q1k chr13 1189 38 554558 555711 C 1152 96.96 1319 accept 0 ALIGNMENT 0 Y12-10o22.p1k chr04 933 62 307336 307335 C 872 0.00 1309 reject_low 1 ALIGNMENT 626 Y12-10o23.q1k chr05 752 41 53313 54023 C 712 96.63 1362 accept 0 ALIGNMENT 936 Y12-10o23.p1k chr05 23 1056 50010 51032 F 1034 98.16 1307 accept 0 ALIGNMENT 1027 Y12-10o24.p1k chr04 1277 19 309121 310366 C 1259 95.71 1297 accept_chi 1 ALIGNMENT 0 Y12-10o24.p1k chr04 62 380 230322 230321 F 319 0.00 1297 reject_low 3 ALIGNMENT 31 Y12-10o24.p1k chr15 518 576 254553 254608 F 59 88.14 1297 reject_low 2 ALIGNMENT 1030 Y12-10o24.q1k chr10 1273 39 205424 206666 C 1235 95.79 1273 accept_chi 0 ALIGNMENT 0 Y12-10o24.p1k chr15 62 517 254553 254552 F 456 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-10o24.p1k chr04 430 524 230371 230468 F 95 0.00 1297 reject_low 3 ALIGNMENT 34 Y12-10o24.p1k chr04 525 576 230469 230520 F 52 90.38 1297 reject_low 3 ALIGNMENT 25 Y12-10o24.p1k chr04 381 429 230322 230370 F 49 83.67 1297 reject_low 3 ALIGNMENT 0 Y12-10o24.p1k chr15 577 854 254608 254607 F 278 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-10o24.p1k chr04 577 854 230520 230519 F 278 0.00 1297 reject_low 3 ALIGNMENT 1073 Y12-10p01.p1k chr07 21 1292 858358 859631 F 1272 95.75 1318 accept 0 ALIGNMENT 910 Y12-10p01.q1k chr07 1023 26 862192 863182 C 998 98.80 1416 accept 0 ALIGNMENT 0 Y12-10p02.p1k chr04 62 148 1504068 1504067 F 87 0.00 1339 reject_low 4 ALIGNMENT 858 Y12-10p02.q1k chr04 1004 27 1507215 1508185 C 978 96.93 1326 accept 0 ALIGNMENT 0 Y12-10p02.p1k chr15 140 732 1060821 1061220 F 593 0.00 1339 reject_low 6 ALIGNMENT 229 Y12-10p02.p1k chr04 18 355 1504146 1504469 F 338 90.83 1339 reject_low 1 ALIGNMENT 0 Y12-10p02.p1k chr15 758 831 1061245 1061244 F 74 0.00 1339 reject_low 2,5,6 ALIGNMENT 23 Y12-10p02.p1k chr15 733 757 1061221 1061245 F 25 100.00 1339 reject_low 2,5,6 ALIGNMENT 1006 Y12-10p02.p1k chr04 18 1227 1504341 1505535 F 1210 95.45 1339 accept 0 ALIGNMENT 0 Y12-10p02.p1k chr04 356 419 1504470 1504506 F 64 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-10p02.p1k chr15 62 185 1060657 1060656 F 124 0.00 1339 reject_low 2 ALIGNMENT 39 Y12-10p02.p1k chr15 18 139 1060698 1060820 F 122 77.05 1339 reject_low 6 ALIGNMENT 0 Y12-10p02.p1k chr04 146 182 1504680 1504743 F 37 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-10p02.p1k chr04 272 831 1504832 1504831 F 560 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-10p02.p1k chr04 336 419 1504240 1504506 F 84 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-10p02.p1k chr15 62 415 1060650 1060649 F 354 0.00 1339 reject_low 5 ALIGNMENT 108 Y12-10p02.p1k chr04 18 145 1504551 1504679 F 128 94.53 1339 reject_low 3 ALIGNMENT 0 Y12-10p02.p1k chr15 589 732 1061072 1061220 F 144 0.00 1339 reject_low 2 ALIGNMENT 0 Y12-10p02.p1k chr04 509 831 1504595 1504594 F 323 0.00 1339 reject_low 1,4 ALIGNMENT 122 Y12-10p02.p1k chr04 149 297 1504068 1504216 F 149 93.96 1339 reject_low 4 ALIGNMENT 0 Y12-10p02.p1k chr04 298 307 1504217 1504211 F 10 0.00 1339 reject_low 4 ALIGNMENT 86 Y12-10p02.p1k chr15 186 588 1060657 1061071 F 403 74.94 1339 reject_low 2 ALIGNMENT 24 Y12-10p02.p1k chr04 308 335 1504212 1504239 F 28 96.43 1339 reject_low 4 ALIGNMENT 37 Y12-10p02.p1k chr04 420 508 1504507 1504595 F 89 80.90 1339 reject_low 1,4 ALIGNMENT 0 Y12-10p02.p1k chr15 509 732 1060743 1061220 F 224 0.00 1339 reject_low 5 ALIGNMENT 48 Y12-10p02.p1k chr15 416 508 1060650 1060742 F 93 83.87 1339 reject_low 5 ALIGNMENT 36 Y12-10p02.p1k chr04 183 271 1504744 1504832 F 89 80.90 1339 reject_low 3 ALIGNMENT 889 Y12-10p03.p1k chr03 1079 20 178611 179664 C 1060 96.23 1349 accept 0 ALIGNMENT 979 Y12-10p03.q1k chr03 36 1172 175588 176729 F 1137 96.48 1313 accept 0 ALIGNMENT 1021 Y12-10p04.q1k chr04 36 1219 40640 41837 F 1184 96.71 1298 accept 0 ALIGNMENT 1039 Y12-10p04.p1k chr04 1229 27 42627 43833 C 1203 95.84 1337 accept 0 ALIGNMENT 47 Y12-10p05.q1k chr07 931 523 858453 858861 C 409 71.64 1491 accept 0 ALIGNMENT 1074 Y12-10p07.p1k chr16 27 1230 473008 474222 F 1204 97.34 1350 accept 0 ALIGNMENT 999 Y12-10p07.q1k chr16 1191 37 476191 477361 C 1155 96.62 1353 accept 0 ALIGNMENT 949 Y12-10p08.p1k chr15 21 1130 750645 751763 F 1110 96.40 1349 accept 0 ALIGNMENT 969 Y12-10p08.q1k chr15 1214 36 754073 755268 C 1179 95.50 1317 accept 0 ALIGNMENT 1017 Y12-10p09.p1k chr14 24 1188 502959 504132 F 1165 96.74 1370 accept 0 ALIGNMENT 955 Y12-10p09.q1k chr14 1220 44 506265 507430 C 1177 95.24 1418 accept 0 ALIGNMENT 1033 Y12-10p10.p1k chr07 1230 16 921150 922382 C 1215 96.21 1357 accept 0 ALIGNMENT 309 Y12-10p10.p1k chr12 1197 603 242744 243350 C 595 85.38 1357 reject_low 1 ALIGNMENT 842 Y12-10p10.q1k chr07 38 1074 917532 918573 F 1037 95.47 1284 accept 0 ALIGNMENT 0 Y12-10p10.p1k chr12 602 62 243351 243350 C 541 0.00 1357 reject_low 1 ALIGNMENT 975 Y12-10p11.p1k chr04 1143 17 1248581 1249735 C 1127 96.63 1310 accept_chi 1 ALIGNMENT 1040 Y12-10p11.q1k chr04 29 1261 110451 111685 F 1233 95.70 1403 accept_chi 0 ALIGNMENT 928 Y12-10p12.q1k chr16 1139 38 38499 39610 C 1102 96.37 1318 accept 0 ALIGNMENT 943 Y12-10p12.p1k chr16 21 1123 33861 34979 F 1103 96.46 1386 accept 0 ALIGNMENT 967 Y12-10p13.q1k chr03 1189 32 45403 46576 C 1158 95.68 1348 accept 0 ALIGNMENT 942 Y12-10p13.p1k chr03 20 1154 41985 43136 F 1135 95.86 1326 accept 0 ALIGNMENT 866 Y12-10p14.p1k chr13 1113 43 198868 199943 C 1071 94.77 1326 ambiguous_trans 16 ALIGNMENT 940 Y12-10p14.p1k chr02 1113 29 262107 263199 C 1085 96.77 1326 ambiguous_trans 2 ALIGNMENT 925 Y12-10p14.p1k chr08 29 1113 545903 546992 F 1085 96.22 1326 ambiguous_trans 6 ALIGNMENT 866 Y12-10p14.p1k chr15 1113 43 120239 121314 C 1071 94.77 1326 ambiguous_trans 18 ALIGNMENT 866 Y12-10p14.p1k chr13 43 1113 375009 376084 F 1071 94.77 1326 ambiguous_trans 17 ALIGNMENT 866 Y12-10p14.p1k chr10 1113 43 474914 475989 C 1071 94.77 1326 ambiguous_trans 13 ALIGNMENT 964 Y12-10p14.p1k chr02 1113 29 223573 224662 C 1085 97.42 1326 ambiguous_trans 1 ALIGNMENT 866 Y12-10p14.p1k chr16 43 1113 806950 808025 F 1071 94.77 1326 ambiguous_trans 19 ALIGNMENT 928 Y12-10p14.p1k chr13 29 1113 359297 360386 F 1085 96.31 1326 ambiguous_trans 4 ALIGNMENT 863 Y12-10p14.p1k chr04 1113 43 1209227 1210302 C 1071 94.68 1326 ambiguous_trans 20 ALIGNMENT 905 Y12-10p14.p1k chr04 43 1113 880607 881682 F 1071 95.99 1326 ambiguous_trans 9 ALIGNMENT 866 Y12-10p14.p1k chr04 43 1113 989028 990103 F 1071 94.77 1326 ambiguous_trans 11 ALIGNMENT 842 Y12-10p14.p1k chr14 1113 29 521697 522768 C 1085 94.38 1326 ambiguous_trans 23 ALIGNMENT 863 Y12-10p14.p1k chr16 1094 43 846969 848023 C 1052 95.06 1326 ambiguous_trans 22 ALIGNMENT 866 Y12-10p14.p1k chr13 1113 43 186701 187776 C 1071 94.77 1326 ambiguous_trans 15 ALIGNMENT 866 Y12-10p14.p1k chr10 1113 43 480498 481573 C 1071 94.77 1326 ambiguous_trans 14 ALIGNMENT 866 Y12-10p14.p1k chr04 1113 43 1098299 1099374 C 1071 94.77 1326 ambiguous_trans 12 ALIGNMENT 842 Y12-10p14.p1k chr16 43 1113 852938 854013 F 1071 94.02 1326 ambiguous_trans 24 ALIGNMENT 928 Y12-10p14.p1k chr12 29 1113 217380 218469 F 1085 96.31 1326 ambiguous_trans_ua 3 ALIGNMENT 925 Y12-10p14.p1k chr05 29 1113 494790 495879 F 1085 96.22 1326 ambiguous_trans 5 ALIGNMENT 970 Y12-10p14.q1k chr14 39 1131 94385 95488 F 1093 97.90 1322 accept 0 ALIGNMENT 910 Y12-10p14.p1k chr14 29 1113 98903 99992 F 1085 95.76 1326 ambiguous_trans 8 ALIGNMENT 866 Y12-10p14.p1k chr01 43 1113 162551 163626 F 1071 94.77 1326 ambiguous_trans 10 ALIGNMENT 863 Y12-10p14.p1k chr16 1113 43 58988 60063 C 1071 94.68 1326 ambiguous_trans 21 ALIGNMENT 922 Y12-10p14.p1k chr07 29 1113 819691 820780 F 1085 96.13 1326 ambiguous_trans 7 ALIGNMENT 1035 Y12-10p15.p1k chr04 22 1261 1020037 1021268 F 1240 95.81 1382 accept 0 ALIGNMENT 939 Y12-10p15.q1k chr04 1038 38 1023471 1024471 C 1001 98.90 1330 accept 0 ALIGNMENT 1021 Y12-10p17.q1k chr04 1239 36 7270 8462 C 1204 96.51 1379 ambiguous_tel 1 ALIGNMENT 979 Y12-10p17.p1k chr04 20 1203 3814 5011 F 1184 95.78 1332 ambiguous_tel 1 ALIGNMENT 1026 Y12-10p17.q1k chr10 36 1239 737253 738446 F 1204 96.51 1379 ambiguous_tel 0 ALIGNMENT 976 Y12-10p17.p1k chr10 1203 20 740705 741902 C 1184 95.78 1332 ambiguous_tel 0 ALIGNMENT 1006 Y12-10p18.q1k chr12 37 1237 455579 456796 F 1201 95.42 1324 manual 0 ALIGNMENT 94 Y12-10p18.p1k chr06 340 447 31622 31729 F 108 98.15 1381 reject_low 2 ALIGNMENT 52 Y12-10p18.p1k chr12 80 21 485696 485757 C 60 96.67 1381 reject_low 5 ALIGNMENT 1037 Y12-10p18.p1k chr12 1244 21 458513 459736 C 1224 96.41 1381 manual 0 ALIGNMENT 0 Y12-10p18.p1k chr12 852 81 485697 485696 C 772 0.00 1381 reject_low 5 ALIGNMENT 1005 Y12-10p18.q1k chr12 37 1236 464716 465932 F 1200 95.42 1324 manual 1 ALIGNMENT 0 Y12-10p18.p1k chr12 852 81 482045 482044 C 772 0.00 1381 reject_low 4 ALIGNMENT 0 Y12-10p18.p1k chr06 62 339 31622 31621 F 278 0.00 1381 reject_low 2 ALIGNMENT 0 Y12-10p18.p1k chr12 852 81 489349 489348 C 772 0.00 1381 reject_low 6 ALIGNMENT 1037 Y12-10p18.p1k chr12 1244 21 467650 468873 C 1224 96.41 1381 manual 1 ALIGNMENT 0 Y12-10p18.p1k chr06 448 852 31729 31728 F 405 0.00 1381 reject_low 2 ALIGNMENT 52 Y12-10p18.p1k chr12 80 21 489348 489409 C 60 96.67 1381 reject_low 6 ALIGNMENT 52 Y12-10p18.p1k chr12 80 21 472464 472525 C 60 96.67 1381 reject_low 3 ALIGNMENT 0 Y12-10p18.p1k chr12 852 81 472465 472464 C 772 0.00 1381 reject_low 3 ALIGNMENT 52 Y12-10p18.p1k chr12 80 21 482044 482105 C 60 96.67 1381 reject_low 4 ALIGNMENT 996 Y12-10p19.q1k chr11 38 1257 375434 376647 F 1220 95.49 1345 accept_chi 0 ALIGNMENT 1021 Y12-10p19.p1k chr08 1225 19 199211 200428 C 1207 96.11 1324 accept_chi 1 ALIGNMENT 222 Y12-10p19.p1k chr11 19 969 156542 157495 F 951 75.60 1324 reject_low 2 ALIGNMENT 973 Y12-10p20.q1k chr07 1140 31 482582 483697 C 1110 97.12 1279 accept 0 ALIGNMENT 0 Y12-10p20.p1k chr02 1006 62 803194 803193 C 945 0.00 1364 ambiguous_tel 1 ALIGNMENT 55 Y12-10p20.p1k chr02 1100 1007 803100 803193 C 94 87.23 1364 ambiguous_tel 1 ALIGNMENT 847 Y12-10p21.q1k chr14 94 1183 445464 446540 F 1090 94.04 1319 accept 0 ALIGNMENT 954 Y12-10p21.p1k chr14 1164 18 448469 449618 C 1147 95.55 1328 accept 0 ALIGNMENT 970 Y12-10p22.q1k chr15 1158 36 291464 292590 C 1123 96.79 1297 accept 0 ALIGNMENT 931 Y12-10p22.p1k chr15 18 1058 288324 289367 F 1041 97.21 1388 accept 0 ALIGNMENT 906 Y12-10p23.p1k chr06 1087 27 37698 38767 C 1061 96.70 1259 accept 0 ALIGNMENT 1012 Y12-10p23.q1k chr06 37 1189 34879 36043 F 1153 96.70 1265 accept 0 ALIGNMENT 0 Y12-10p24.q1k chr04 884 846 437146 437145 C 39 0.00 1290 reject_low 18 ALIGNMENT 0 Y12-10p24.q1k chr12 912 62 976252 976251 C 851 0.00 1290 accept_chi 4 ALIGNMENT 265 Y12-10p24.q1k chr15 844 554 703773 704063 C 291 98.28 1290|0,3 reject_low 23 ALIGNMENT 57 Y12-10p24.q1k chr15 558 474 710025 710108 C 85 94.12 1290|2,0 reject_low 23 ALIGNMENT 0 Y12-10p24.q1k chr14 884 849 561605 561604 C 36 0.00 1290 reject_low 9 ALIGNMENT 343 Y12-10p24.q1k chr08 845 474 91386 91757 C 372 98.92 1290 reject_low 11 ALIGNMENT 27 Y12-10p24.q1k chr15 849 897 709943 709991 F 49 87.76 1290 reject_low 21 ALIGNMENT 344 Y12-10p24.q1k chr16 473 845 436886 437258 F 373 98.93 1290 reject_low 10 ALIGNMENT 0 Y12-10p24.q1k chr14 62 473 632121 632120 F 412 0.00 1290 reject_low 15 ALIGNMENT 0 Y12-10p24.q1k chr07 473 62 111230 111229 C 412 0.00 1290 reject_low 12 ALIGNMENT 1063 Y12-10p24.p1k chr10 1231 21 167153 168368 C 1211 96.61 1296 accept_chi 0 ALIGNMENT 0 Y12-10p24.q1k chr14 473 62 561979 561978 C 412 0.00 1290 reject_low 9 ALIGNMENT 355 Y12-10p24.q1k chr09 474 844 196650 197020 F 371 100.00 1290 reject_low 8 ALIGNMENT 0 Y12-10p24.q1k chr13 472 62 504142 504141 C 411 0.00 1290 reject_low 6 ALIGNMENT 0 Y12-10p24.q1k chr15 884 845 703774 703773 C 40 0.00 1290 reject_low 23 ALIGNMENT 334 Y12-10p24.q1k chr14 474 844 632121 632491 F 371 98.11 1290 reject_low 15 ALIGNMENT 0 Y12-10p24.q1k chr13 62 473 808536 808535 F 412 0.00 1290 reject_low 17 ALIGNMENT 0 Y12-10p24.q1k chr16 845 884 443109 443108 F 40 0.00 1290 ambiguous_trans 3 ALIGNMENT 0 Y12-10p24.q1k chr15 62 844 703592 703591 F 783 0.00 1290 reject_low 14 ALIGNMENT 0 Y12-10p24.q1k chr10 472 62 203691 203690 C 411 0.00 1290 reject_low 5 ALIGNMENT 312 Y12-10p24.q1k chr04 845 474 437145 437515 C 372 96.24 1290 reject_low 18 ALIGNMENT 0 Y12-10p24.q1k chr15 556 557 704061 710026 C 0 0.00 1290 reject_low 23 ALIGNMENT 0 Y12-10p24.q1k chr09 845 884 197020 197019 F 40 0.00 1290 reject_low 8 ALIGNMENT 340 Y12-10p24.q1k chr07 845 474 110858 111229 C 372 98.66 1290 reject_low 12 ALIGNMENT 0 Y12-10p24.q1k chr15 473 62 710109 710108 C 412 0.00 1290 reject_low 23 ALIGNMENT 33 Y12-10p24.q1k chr15 845 916 703592 703663 F 72 84.72 1290 reject_low 14 ALIGNMENT 0 Y12-10p24.q1k chr02 846 884 643854 643853 F 39 0.00 1290 reject_low 13 ALIGNMENT 0 Y12-10p24.q1k chr08 884 846 91387 91386 C 39 0.00 1290 reject_low 11 ALIGNMENT 0 Y12-10p24.q1k chr10 884 846 197464 197463 C 39 0.00 1290 ambiguous_trans 1 ALIGNMENT 0 Y12-10p24.q1k chr13 884 845 503771 503770 C 40 0.00 1290 reject_low 6 ALIGNMENT 106 Y12-10p24.q1k chr12 1070 913 976098 976251 C 158 93.67 1290 accept_chi 4 ALIGNMENT 0 Y12-10p24.q1k chr05 845 884 354726 354725 F 40 0.00 1290 reject_low 16 ALIGNMENT 0 Y12-10p24.q1k chr08 473 62 91758 91757 C 412 0.00 1290 reject_low 11 ALIGNMENT 0 Y12-10p24.q1k chr15 62 848 709943 709942 F 787 0.00 1290 reject_low 21 ALIGNMENT 0 Y12-10p24.q1k chr04 473 62 437516 437515 C 412 0.00 1290 reject_low 18 ALIGNMENT 0 Y12-10p24.q1k chr16 846 884 437258 437257 F 39 0.00 1290 reject_low 10 ALIGNMENT 148 Y12-10p24.q1k chr14 848 686 96447 96609 C 163 98.16 1290 reject_low 22 ALIGNMENT 0 Y12-10p24.q1k chr14 685 62 96610 96609 C 624 0.00 1290 reject_low 22 ALIGNMENT 0 Y12-10p24.q1k chr08 884 850 85531 85530 C 35 0.00 1290 ambiguous_trans 2 ALIGNMENT 765 Y12-10p24.q1k chr10 845 41 197463 198267 C 805 99.88 1290 ambiguous_trans 1 ALIGNMENT 0 Y12-10p24.q1k chr02 62 472 643482 643481 F 411 0.00 1290 reject_low 13 ALIGNMENT 0 Y12-10p24.q1k chr07 845 884 931543 931542 F 40 0.00 1290 reject_low 19 ALIGNMENT 331 Y12-10p24.q1k chr05 474 844 354356 354726 F 371 97.84 1290 reject_low 16 ALIGNMENT 27 Y12-10p24.q1k chr15 849 897 704315 704363 F 49 87.76 1290 reject_low 20 ALIGNMENT 0 Y12-10p24.q1k chr05 62 473 354356 354355 F 412 0.00 1290 reject_low 16 ALIGNMENT 0 Y12-10p24.q1k chr15 62 848 704315 704314 F 787 0.00 1290 reject_low 20 ALIGNMENT 0 Y12-10p24.q1k chr07 62 473 931174 931173 F 412 0.00 1290 reject_low 19 ALIGNMENT 0 Y12-10p24.q1k chr10 884 846 203319 203318 C 39 0.00 1290 reject_low 5 ALIGNMENT 0 Y12-10p24.q1k chr02 845 884 36218 36217 F 40 0.00 1290 reject_low 7 ALIGNMENT 744 Y12-10p24.q1k chr16 41 844 442306 443109 F 804 99.00 1290 ambiguous_trans 3 ALIGNMENT 343 Y12-10p24.q1k chr14 848 474 561604 561978 C 375 98.67 1290 reject_low 9 ALIGNMENT 0 Y12-10p24.q1k chr14 884 849 96448 96447 C 36 0.00 1290 reject_low 22 ALIGNMENT 0 Y12-10p24.q1k chr14 845 884 632491 632490 F 40 0.00 1290 reject_low 15 ALIGNMENT 308 Y12-10p24.q1k chr07 474 844 931174 931543 F 371 95.96 1290 reject_low 19 ALIGNMENT 0 Y12-10p24.q1k chr09 62 473 196650 196649 F 412 0.00 1290 reject_low 8 ALIGNMENT 0 Y12-10p24.q1k chr07 884 846 110859 110858 C 39 0.00 1290 reject_low 12 ALIGNMENT 356 Y12-10p24.q1k chr10 845 473 203318 203690 C 373 100.00 1290 reject_low 5 ALIGNMENT 355 Y12-10p24.q1k chr13 844 473 503770 504141 C 372 100.00 1290 reject_low 6 ALIGNMENT 748 Y12-10p24.q1k chr08 849 41 85530 86338 C 809 99.01 1290 ambiguous_trans 2 ALIGNMENT 355 Y12-10p24.q1k chr02 474 844 35848 36218 F 371 100.00 1290 reject_low 7 ALIGNMENT 338 Y12-10p24.q1k chr02 473 845 643482 643854 F 373 98.39 1290 reject_low 13 ALIGNMENT 0 Y12-10p24.q1k chr16 62 472 436886 436885 F 411 0.00 1290 reject_low 10 ALIGNMENT 327 Y12-10p24.q1k chr13 474 845 808536 808906 F 372 97.58 1290 reject_low 17 ALIGNMENT 0 Y12-10p24.q1k chr02 62 473 35848 35847 F 412 0.00 1290 reject_low 7 ALIGNMENT 0 Y12-10p24.q1k chr13 846 884 808906 808905 F 39 0.00 1290 reject_low 17 ALIGNMENT 1117 Y12-11a01.p1k chr12 25 1287 451645 452915 F 1263 96.60 1336 accept 0 ALIGNMENT 761 Y12-11a01.p1k chr12 166 955 489754 490543 F 790 98.99 1336 reject_low 2 ALIGNMENT 0 Y12-11a01.p1k chr12 62 165 489754 489753 F 104 0.00 1336 reject_low 2 ALIGNMENT 1117 Y12-11a01.p1k chr12 25 1287 460782 462052 F 1263 96.60 1336 accept 1 ALIGNMENT 0 Y12-11a02.q1k chr06 307 62 28916 28915 C 246 0.00 1306 reject_low 3 ALIGNMENT 0 Y12-11a02.q1k chr02 838 779 800746 800745 C 60 0.00 1306 reject_low 1 ALIGNMENT 887 Y12-11a02.p1k chr16 16 1109 928228 929311 F 1094 95.80 1324 accept 0 ALIGNMENT 0 Y12-11a02.q1k chr07 838 573 1070749 1070748 C 266 0.00 1306 reject_low 2 ALIGNMENT 159 Y12-11a02.q1k chr02 778 42 800745 801481 C 737 74.63 1306 reject_low 1 ALIGNMENT 0 Y12-11a02.q1k chr06 948 779 28289 28444 C 170 0.00 1306 reject_low 3 ALIGNMENT 21 Y12-11a02.q1k chr06 778 308 28445 28915 C 471 69.21 1306 reject_low 3 ALIGNMENT 70 Y12-11a02.q1k chr07 572 168 1070748 1071152 C 405 73.33 1306 reject_low 2 ALIGNMENT 20 Y12-11a02.q1k chr06 975 949 28262 28288 C 27 92.59 1306 reject_low 3 ALIGNMENT 0 Y12-11a02.q1k chr07 167 62 1071153 1071152 C 106 0.00 1306 reject_low 2 ALIGNMENT 929 Y12-11a02.q1k chr16 1165 38 931216 932340 C 1128 95.39 1306 accept 0 ALIGNMENT 462 Y12-11a03.p1k chr13 517 21 480703 481201 C 497 98.59 1323 reject_bad_break 0 ALIGNMENT 23 Y12-11a03.p1k chr14 654 765 546561 546674 F 112 75.89 1323 reject_low 22 ALIGNMENT 327 Y12-11a03.p1k chr07 517 857 712209 712549 F 341 100.00 1323 reject_low 2 ALIGNMENT 0 Y12-11a03.p1k chr03 726 725 168593 168931 F 0 0.00 1323 reject_low 21 ALIGNMENT 0 Y12-11a03.p1k chr05 517 62 434968 434967 C 456 0.00 1323 reject_low 11 ALIGNMENT 0 Y12-11a03.p1k chr16 62 517 769317 769316 F 456 0.00 1323 reject_low 13 ALIGNMENT 327 Y12-11a03.p1k chr01 518 857 182614 182953 F 340 100.00 1323 reject_low 5 ALIGNMENT 0 Y12-11a03.p1k chr11 62 849 202622 202621 F 788 0.00 1323 reject_low 1 ALIGNMENT 0 Y12-11a03.q1k chr11 214 62 204770 204769 C 153 0.00 1292 reject_low 1 ALIGNMENT 305 Y12-11a03.p1k chr04 518 857 668091 668431 F 340 97.94 1323 reject_low 16 ALIGNMENT 213 Y12-11a03.p1k chr13 1260 858 480319 480707 C 403 87.84 1323 reject_bad_break 0 ALIGNMENT 0 Y12-11a03.p1k chr04 517 62 946290 946289 C 456 0.00 1323 reject_low 10 ALIGNMENT 0 Y12-11a03.q1k chr11 490 395 204494 204589 C 96 0.00 1292 reject_low 1 ALIGNMENT 183 Y12-11a03.p1k chr03 514 728 168380 168595 F 215 96.74 1323|0,3 reject_low 21 ALIGNMENT 0 Y12-11a03.p1k chr13 857 518 480708 480702 C 340 0.00 1323 reject_bad_break 0 ALIGNMENT 324 Y12-11a03.p1k chr14 518 858 546739 547079 F 341 99.71 1323 reject_low 8 ALIGNMENT 0 Y12-11a03.p1k chr04 62 517 668091 668090 F 456 0.00 1323 reject_low 16 ALIGNMENT 327 Y12-11a03.p1k chr09 517 857 205216 205556 F 341 100.00 1323 reject_low 3 ALIGNMENT 200 Y12-11a03.q1k chr11 1091 491 203889 204493 C 601 78.37 1292 reject_low 1 ALIGNMENT 33 Y12-11a03.q1k chr11 394 215 204590 204769 C 180 73.33 1292 reject_low 1 ALIGNMENT 293 Y12-11a03.p1k chr14 518 857 726235 726575 F 340 96.76 1323 reject_low 20 ALIGNMENT 0 Y12-11a03.p1k chr14 62 517 546739 546738 F 456 0.00 1323 reject_low 8 ALIGNMENT 308 Y12-11a03.p1k chr05 857 518 434627 434967 C 340 98.24 1323 reject_low 11 ALIGNMENT 0 Y12-11a03.p1k chr07 62 517 707199 707198 F 456 0.00 1323 reject_low 6 ALIGNMENT 302 Y12-11a03.p1k chr08 857 518 146324 146664 C 340 97.65 1323 reject_low 17 ALIGNMENT 0 Y12-11a03.p1k chr07 62 517 735987 735986 F 456 0.00 1323 reject_low 12 ALIGNMENT 327 Y12-11a03.p1k chr11 857 518 202290 202629 C 340 100.00 1323 reject_low 7 ALIGNMENT 0 Y12-11a03.p1k chr16 62 527 856551 856550 F 466 0.00 1323 reject_low 14 ALIGNMENT 0 Y12-11a03.p1k chr01 62 517 182614 182613 F 456 0.00 1323 reject_low 5 ALIGNMENT 0 Y12-11a03.p1k chr09 62 516 205216 205215 F 455 0.00 1323 reject_low 3 ALIGNMENT 308 Y12-11a03.p1k chr07 518 857 735987 736327 F 340 98.24 1323 reject_low 12 ALIGNMENT 0 Y12-11a03.p1k chr11 517 62 202630 202629 C 456 0.00 1323 reject_low 7 ALIGNMENT 327 Y12-11a03.p1k chr09 517 857 210304 210644 F 341 100.00 1323 reject_low 4 ALIGNMENT 0 Y12-11a03.p1k chr12 62 517 374000 373999 F 456 0.00 1323 reject_low 18 ALIGNMENT 0 Y12-11a03.p1k chr14 62 517 726235 726234 F 456 0.00 1323 reject_low 20 ALIGNMENT 0 Y12-11a03.p1k chr09 62 516 210304 210303 F 455 0.00 1323 reject_low 4 ALIGNMENT 306 Y12-11a03.p1k chr15 518 857 854273 854612 F 340 98.24 1323 reject_low 15 ALIGNMENT 308 Y12-11a03.p1k chr04 857 518 945949 946289 C 340 98.24 1323 reject_low 10 ALIGNMENT 0 Y12-11a03.p1k chr15 62 517 854273 854272 F 456 0.00 1323 reject_low 15 ALIGNMENT 307 Y12-11a03.p1k chr16 528 858 856551 856882 F 331 99.09 1323 reject_low 14 ALIGNMENT 0 Y12-11a03.p1k chr08 517 62 146665 146664 C 456 0.00 1323 reject_low 17 ALIGNMENT 293 Y12-11a03.p1k chr04 517 857 1023130 1023471 F 341 96.77 1323 reject_low 19 ALIGNMENT 1041 Y12-11a03.q1k chr13 37 1199 475848 477017 F 1163 97.16 1292 reject_bad_break 0 ALIGNMENT 0 Y12-11a03.p1k chr14 62 653 546561 546560 F 592 0.00 1323 reject_low 22 ALIGNMENT 0 Y12-11a03.p1k chr03 62 513 168380 168379 F 452 0.00 1323 reject_low 21 ALIGNMENT 0 Y12-11a03.p1k chr07 62 516 712209 712208 F 455 0.00 1323 reject_low 2 ALIGNMENT 0 Y12-11a03.p1k chr14 766 871 546674 546673 F 106 0.00 1323 reject_low 22 ALIGNMENT 308 Y12-11a03.p1k chr16 518 857 769317 769657 F 340 98.24 1323 reject_low 13 ALIGNMENT 0 Y12-11a03.p1k chr04 62 516 1023130 1023129 F 455 0.00 1323 reject_low 19 ALIGNMENT 0 Y12-11a03.p1k chr07 517 62 319766 319765 C 456 0.00 1323 reject_low 9 ALIGNMENT 307 Y12-11a03.p1k chr07 859 518 319424 319765 C 342 97.95 1323 reject_low 9 ALIGNMENT 296 Y12-11a03.p1k chr12 518 860 374000 374342 F 343 97.08 1323 reject_low 18 ALIGNMENT 327 Y12-11a03.p1k chr07 518 857 707199 707538 F 340 100.00 1323 reject_low 6 ALIGNMENT 61 Y12-11a03.p1k chr11 850 952 202622 202725 F 103 87.38 1323 reject_low 1 ALIGNMENT 130 Y12-11a03.p1k chr03 723 862 168929 169068 F 140 99.29 1323|3,0 reject_low 21 ALIGNMENT 996 Y12-11a04.q1k chr16 35 1247 860446 861663 F 1213 94.97 1295 accept 0 ALIGNMENT 1068 Y12-11a04.p1k chr16 1280 16 863169 864434 C 1265 95.73 1283 accept 0 ALIGNMENT 94 Y12-11a05.q1k chr06 799 692 31622 31729 C 108 98.15 1374 reject_low 3 ALIGNMENT 904 Y12-11a05.p1k chr12 1052 20 463466 464495 C 1033 96.61 1318 accept 0 ALIGNMENT 819 Y12-11a05.q1k chr12 53 1072 467807 468815 F 1020 95.49 1374 reject_low 2 ALIGNMENT 0 Y12-11a05.q1k chr06 691 62 31730 31729 C 630 0.00 1374 reject_low 3 ALIGNMENT 819 Y12-11a05.q1k chr12 53 1072 458670 459678 F 1020 95.49 1374 accept 0 ALIGNMENT 904 Y12-11a05.p1k chr12 1052 20 454329 455358 C 1033 96.61 1318 reject_low 1 ALIGNMENT 966 Y12-11a06.p1k chr16 21 1219 620701 621893 F 1199 95.08 1271 accept 0 ALIGNMENT 868 Y12-11a06.q1k chr16 1125 39 622731 623804 C 1087 95.03 1334 accept 0 ALIGNMENT 119 Y12-11a07.p1k chr12 446 564 485696 485814 F 119 100.00 1340 reject_low 6 ALIGNMENT 0 Y12-11a07.p1k chr12 137 445 482044 482043 F 309 0.00 1340 reject_low 5 ALIGNMENT 462 Y12-11a07.p1k chr12 24 564 468397 468930 F 541 97.04 1340 reject_low 2 ALIGNMENT 128 Y12-11a07.p1k chr12 446 579 489348 489481 F 134 98.51 1340 reject_low 3 ALIGNMENT 0 Y12-11a07.p1k chr12 565 808 485814 485813 F 244 0.00 1340 reject_low 6 ALIGNMENT 0 Y12-11a07.p1k chr12 137 445 485696 485695 F 309 0.00 1340 reject_low 6 ALIGNMENT 957 Y12-11a07.q1k chr12 1116 37 455775 456851 C 1080 96.57 1344 reject_low 1 ALIGNMENT 0 Y12-11a07.p1k chr12 137 445 472464 472463 F 309 0.00 1340 reject_low 4 ALIGNMENT 0 Y12-11a07.p1k chr12 137 445 489348 489347 F 309 0.00 1340 reject_low 3 ALIGNMENT 119 Y12-11a07.p1k chr12 446 564 482044 482162 F 119 100.00 1340 reject_low 5 ALIGNMENT 0 Y12-11a07.p1k chr12 580 808 489481 489480 F 229 0.00 1340 reject_low 3 ALIGNMENT 776 Y12-11a07.p1k chr12 24 1142 459260 460394 F 1119 92.49 1340 accept 0 ALIGNMENT 0 Y12-11a07.p1k chr12 565 808 482162 482161 F 244 0.00 1340 reject_low 5 ALIGNMENT 0 Y12-11a07.p1k chr06 808 187 31623 31622 C 622 0.00 1340 reject_low 7 ALIGNMENT 998 Y12-11a07.q1k chr12 1332 37 464700 465988 C 1296 93.44 1344 accept 0 ALIGNMENT 69 Y12-11a07.p1k chr06 186 98 31622 31708 C 89 96.63 1340 reject_low 7 ALIGNMENT 119 Y12-11a07.p1k chr12 446 564 472464 472582 F 119 100.00 1340 reject_low 4 ALIGNMENT 0 Y12-11a07.p1k chr12 565 808 468930 468929 F 244 0.00 1340 reject_low 2 ALIGNMENT 0 Y12-11a07.p1k chr12 565 808 472582 472581 F 244 0.00 1340 reject_low 4 ALIGNMENT 1002 Y12-11a09.p1k chr07 1248 20 720079 721294 C 1229 95.85 1325 accept 0 ALIGNMENT 956 Y12-11a09.q1k chr07 34 1120 716033 717127 F 1087 97.24 1292 accept 0 ALIGNMENT 979 Y12-11a10.q1k chr02 1207 35 721764 722934 C 1173 95.48 1345 accept 0 ALIGNMENT 1032 Y12-11a10.p1k chr02 18 1191 717584 718762 F 1174 97.19 1290 accept 0 ALIGNMENT 46 Y12-11a11.q1k chr09 1157 977 439487 439681 C 181 79.01 1323 reject_low 7 ALIGNMENT 200 Y12-11a11.q1k chr15 98 455 29186 29543 F 358 86.03 1323 reject_low 5 ALIGNMENT 0 Y12-11a11.q1k chr09 277 801 23505 23504 F 525 0.00 1323 reject_low 12 ALIGNMENT 0 Y12-11a11.q1k chr01 103 62 222644 222643 C 42 0.00 1323 reject_low 20 ALIGNMENT 69 Y12-11a11.q1k chr09 82 276 23314 23505 F 195 80.00 1323 reject_low 12 ALIGNMENT 985 Y12-11a11.p1k chr12 18 1166 1060379 1061552 F 1149 96.26 1277 accept_tel 0 ALIGNMENT 769 Y12-11a11.q1k chr08 918 34 542557 543432 C 885 96.72 1323 reject_low 3 ALIGNMENT 72 Y12-11a11.q1k chr15 82 276 29065 29256 F 195 80.51 1323 reject_low 10 ALIGNMENT 0 Y12-11a11.q1k chr15 62 113 28980 28979 F 52 0.00 1323 reject_low 22 ALIGNMENT 0 Y12-11a11.q1k chr09 62 103 23549 23548 F 42 0.00 1323 reject_low 14 ALIGNMENT 53 Y12-11a11.q1k chr15 104 183 29300 29379 F 80 90.00 1323 reject_low 19 ALIGNMENT 0 Y12-11a11.q1k chr09 62 96 23755 23754 F 35 0.00 1323 reject_low 4 ALIGNMENT 0 Y12-11a11.q1k chr09 277 801 23826 23825 F 525 0.00 1323 reject_low 11 ALIGNMENT 26 Y12-11a11.q1k chr15 114 167 28980 29033 F 54 83.33 1323 reject_low 22 ALIGNMENT 52 Y12-11a11.q1k chr01 168 104 222579 222643 C 65 93.85 1323 reject_low 20 ALIGNMENT 0 Y12-11a11.q1k chr13 62 979 5728 5727 F 918 0.00 1323 reject_low 8 ALIGNMENT 48 Y12-11a11.q1k chr09 185 279 23309 23403 F 95 84.21 1323 reject_low 17 ALIGNMENT 24 Y12-11a11.q1k chr05 1147 1057 570023 570113 C 91 76.92 1323 reject_low 21 ALIGNMENT 0 Y12-11a11.q1k chr15 168 184 29034 29059 F 17 0.00 1323 reject_low 22 ALIGNMENT 53 Y12-11a11.q1k chr09 82 183 23848 23949 F 102 85.29 1323 reject_low 13 ALIGNMENT 96 Y12-11a11.q1k chr09 761 918 24305 24462 F 158 86.08 1323 reject_low 4,6 ALIGNMENT 0 Y12-11a11.q1k chr09 490 760 24148 24304 F 271 0.00 1323 reject_low 4 ALIGNMENT 0 Y12-11a11.q1k chr09 62 81 23848 23847 F 20 0.00 1323 reject_low 13 ALIGNMENT 0 Y12-11a11.q1k chr09 62 81 23314 23313 F 20 0.00 1323 reject_low 12 ALIGNMENT 0 Y12-11a11.q1k chr09 274 801 23715 23714 F 528 0.00 1323 reject_low 14 ALIGNMENT 165 Y12-11a11.q1k chr09 97 489 23755 24147 F 393 81.42 1323 reject_low 4 ALIGNMENT 0 Y12-11a11.q1k chr08 801 277 543299 543298 C 525 0.00 1323 reject_low 16 ALIGNMENT 775 Y12-11a11.q1k chr01 918 34 221946 222821 C 885 96.95 1323 reject_low 2 ALIGNMENT 45 Y12-11a11.q1k chr15 185 279 29060 29154 F 95 83.16 1323 reject_low 22 ALIGNMENT 0 Y12-11a11.q1k chr08 801 172 543188 543187 C 630 0.00 1323 reject_low 18 ALIGNMENT 0 Y12-11a11.q1k chr08 103 62 543255 543254 C 42 0.00 1323 reject_low 18 ALIGNMENT 55 Y12-11a11.q1k chr08 276 212 543298 543362 C 65 95.38 1323 reject_low 16 ALIGNMENT 41 Y12-11a11.q1k chr13 980 1130 5728 5889 F 151 79.47 1323 reject_low 8 ALIGNMENT 32 Y12-11a11.q1k chr07 974 1157 167 361 F 184 76.63 1323 reject_low 9 ALIGNMENT 55 Y12-11a11.q1k chr01 276 212 222687 222751 C 65 95.38 1323 reject_low 15 ALIGNMENT 0 Y12-11a11.q1k chr09 280 801 23403 23402 F 522 0.00 1323 reject_low 17 ALIGNMENT 39 Y12-11a11.q1k chr05 1056 974 570125 570208 C 83 86.75 1323 reject_low 21 ALIGNMENT 0 Y12-11a11.q1k chr07 62 973 167 166 F 912 0.00 1323 reject_low 9 ALIGNMENT 0 Y12-11a11.q1k chr01 801 277 222688 222687 C 525 0.00 1323 reject_low 15 ALIGNMENT 0 Y12-11a11.q1k chr15 456 801 29543 29542 F 346 0.00 1323 reject_low 5 ALIGNMENT 0 Y12-11a11.q1k chr15 280 801 29154 29153 F 522 0.00 1323 reject_low 22 ALIGNMENT 0 Y12-11a11.q1k chr09 976 62 439682 439681 C 915 0.00 1323 reject_low 7 ALIGNMENT 0 Y12-11a11.q1k chr09 62 184 23309 23308 F 123 0.00 1323 reject_low 17 ALIGNMENT 0 Y12-11a11.q1k chr15 184 801 29379 29378 F 618 0.00 1323 reject_low 19 ALIGNMENT 33 Y12-11a11.q1k chr12 1056 974 1064815 1064898 C 83 84.34 1323 accept_tel 0 ALIGNMENT 0 Y12-11a11.q1k chr09 62 97 23435 23434 F 36 0.00 1323 reject_low 6 ALIGNMENT 937 Y12-11a11.p1k chr03 18 1166 304982 306155 F 1149 94.87 1277 reject_low 1 ALIGNMENT 0 Y12-11a11.q1k chr09 184 801 23949 23948 F 618 0.00 1323 reject_low 13 ALIGNMENT 0 Y12-11a11.q1k chr09 62 96 23647 23646 F 35 0.00 1323 reject_low 11 ALIGNMENT 0 Y12-11a11.q1k chr15 62 103 29300 29299 F 42 0.00 1323 reject_low 19 ALIGNMENT 77 Y12-11a11.q1k chr09 97 276 23647 23826 F 180 81.67 1323 reject_low 11 ALIGNMENT 55 Y12-11a11.q1k chr08 171 104 543187 543254 C 68 94.12 1323 reject_low 18 ALIGNMENT 0 Y12-11a11.q1k chr15 277 801 29256 29255 F 525 0.00 1323 reject_low 10 ALIGNMENT 0 Y12-11a11.q1k chr05 973 62 570209 570208 C 912 0.00 1323 reject_low 21 ALIGNMENT 124 Y12-11a11.q1k chr09 98 279 23435 23616 F 182 90.11 1323 reject_low 6 ALIGNMENT 0 Y12-11a11.q1k chr05 1056 1057 570114 570124 C 0 0.00 1323 reject_low 21 ALIGNMENT 0 Y12-11a11.q1k chr15 62 97 29186 29185 F 36 0.00 1323 reject_low 5 ALIGNMENT 0 Y12-11a11.q1k chr15 62 81 29065 29064 F 20 0.00 1323 reject_low 10 ALIGNMENT 0 Y12-11a11.q1k chr01 801 169 222580 222579 C 633 0.00 1323 reject_low 20 ALIGNMENT 0 Y12-11a11.q1k chr01 211 62 222752 222751 C 150 0.00 1323 reject_low 15 ALIGNMENT 0 Y12-11a11.q1k chr12 973 62 1064899 1064898 C 912 0.00 1323 accept_tel 0 ALIGNMENT 0 Y12-11a11.q1k chr08 211 62 543363 543362 C 150 0.00 1323 reject_low 16 ALIGNMENT 0 Y12-11a11.q1k chr09 280 760 23617 24304 F 481 0.00 1323 reject_low 6 ALIGNMENT 63 Y12-11a11.q1k chr09 104 273 23549 23715 F 170 80.59 1323 reject_low 14 ALIGNMENT 1053 Y12-11a12.p1k chr03 1229 21 160527 161749 C 1209 96.53 1294 accept 0 ALIGNMENT 934 Y12-11a12.q1k chr03 32 1165 156264 157404 F 1134 95.24 1303 accept 0 ALIGNMENT 1007 Y12-11a13.q1k chr05 1176 35 378343 379485 C 1142 96.94 1283 accept_chi 0 ALIGNMENT 998 Y12-11a13.p1k chr07 30 1184 433243 434398 F 1155 96.19 1274 accept_chi 1 ALIGNMENT 936 Y12-11a14.q1k chr15 1166 33 36880 38013 C 1134 94.97 1295 accept 0 ALIGNMENT 1038 Y12-11a14.p1k chr15 23 1191 33737 34893 F 1169 97.95 1282 accept 0 ALIGNMENT 1007 Y12-11a15.q1k chr15 38 1296 1047892 1049157 F 1259 94.52 1296 accept 0 ALIGNMENT 1030 Y12-11a15.p1k chr15 1246 20 1050823 1052059 C 1227 95.60 1338 accept 0 ALIGNMENT 259 Y12-11a16.p1k chr02 1270 684 430375 430959 C 587 81.94 1347 reject_low 1 ALIGNMENT 168 Y12-11a16.p1k chr01 22 241 226625 226844 F 220 92.27 1347 reject_low 3 ALIGNMENT 989 Y12-11a16.q1k chr02 37 1138 423760 424872 F 1102 97.73 1272 accept 0 ALIGNMENT 0 Y12-11a16.p1k chr01 62 692 225446 225445 F 631 0.00 1347 reject_low 5 ALIGNMENT 0 Y12-11a16.p1k chr08 242 881 553492 553491 F 640 0.00 1347 reject_low 4 ALIGNMENT 150 Y12-11a16.p1k chr08 726 1196 552127 552596 F 471 77.28 1347 reject_low 6 ALIGNMENT 0 Y12-11a16.p1k chr01 242 881 226844 226843 F 640 0.00 1347 reject_low 3 ALIGNMENT 1125 Y12-11a16.p1k chr02 1283 22 428511 429771 C 1262 97.15 1347 accept 0 ALIGNMENT 168 Y12-11a16.p1k chr08 22 241 553273 553492 F 220 92.27 1347 reject_low 4 ALIGNMENT 160 Y12-11a16.p1k chr01 693 1196 225446 225948 F 504 77.38 1347 reject_low 5 ALIGNMENT 0 Y12-11a16.p1k chr02 683 62 430960 430959 C 622 0.00 1347 reject_low 1 ALIGNMENT 0 Y12-11a16.p1k chr02 881 296 427651 427650 C 586 0.00 1347 reject_low 2 ALIGNMENT 0 Y12-11a16.p1k chr08 62 725 552127 552126 F 664 0.00 1347 reject_low 6 ALIGNMENT 183 Y12-11a16.p1k chr02 295 22 427650 427921 C 274 90.15 1347 reject_low 2 ALIGNMENT 1038 Y12-11a18.q1k chr15 1254 36 885908 887130 C 1219 96.39 1268 accept 0 ALIGNMENT 951 Y12-11a19.q1k chr14 33 1225 230894 232069 F 1193 94.97 1284 accept 0 ALIGNMENT 948 Y12-11a19.p1k chr14 1093 19 234011 235089 C 1075 97.30 1269 accept 0 ALIGNMENT 983 Y12-11a20.q1k chr14 40 1241 508901 510122 F 1202 95.34 1246 accept 0 ALIGNMENT 1004 Y12-11a20.p1k chr14 1284 14 512909 514177 C 1271 95.04 1295 accept 0 ALIGNMENT 746 Y12-11a21.q1k chr12 2 918 131299 132207 F 917 95.31 1196 accept 0 ALIGNMENT 428 Y12-11a21.p1k chr12 665 35 134513 135138 C 631 91.60 1226 accept 0 ALIGNMENT 996 Y12-11a22.q1k chr07 32 1180 799027 800172 F 1149 96.61 1241 accept 0 ALIGNMENT 929 Y12-11a23.q1k chr04 1094 30 1133753 1134807 C 1065 97.28 1205 accept_chi 0 ALIGNMENT 777 Y12-11a23.p1k chr10 183 1066 330442 331319 F 884 97.40 1237 accept_chi 1 ALIGNMENT 661 Y12-11a24.p1k chr12 1042 182 436593 437447 C 861 93.50 1201 accept 0 ALIGNMENT 936 Y12-11b01.q1k chr15 34 1110 157998 159075 F 1077 96.47 1309 accept 0 ALIGNMENT 182 Y12-11b02.p1k chr16 1015 451 551128 551677 C 565 79.29 1533 accept 0 ALIGNMENT 932 Y12-11b02.q1k chr16 35 1182 547111 548237 F 1148 95.56 1345 accept 0 ALIGNMENT 1033 Y12-11b03.p1k chr09 18 1185 281564 282741 F 1168 97.43 1249 accept 0 ALIGNMENT 964 Y12-11b03.q1k chr09 1195 37 283452 284623 C 1159 95.43 1283 accept 0 ALIGNMENT 817 Y12-11b04.q1k chr01 34 1236 4922 6100 F 1203 92.02 1324 accept 0 ALIGNMENT 1004 Y12-11b04.p1k chr01 1275 15 7672 8922 C 1261 95.24 1276 accept 0 ALIGNMENT 949 Y12-11b06.q1k chr13 1161 38 473856 474984 C 1124 95.73 1300 accept 0 ALIGNMENT 1047 Y12-11b06.p1k chr13 19 1216 468351 469543 F 1198 97.33 1261 accept 0 ALIGNMENT 1023 Y12-11b07.p1k chr04 1231 18 599226 600445 C 1214 95.55 1281 accept 0 ALIGNMENT 935 Y12-11b07.q1k chr04 29 1158 596297 597428 F 1130 95.49 1324 accept 0 ALIGNMENT 1021 Y12-11b08.q1k chr15 40 1213 948281 949473 F 1174 96.42 1317 accept 0 ALIGNMENT 1009 Y12-11b08.p1k chr15 1209 20 951800 953002 C 1190 96.64 1267 accept 0 ALIGNMENT 23 Y12-11b09.q1k chr13 160 108 587686 587738 C 53 94.34 1271 reject_low 2 ALIGNMENT 30 Y12-11b09.q1k chr04 161 76 390424 390509 C 86 89.53 1271 reject_low 1 ALIGNMENT 985 Y12-11b09.p1k chr07 17 1226 951513 952734 F 1210 95.12 1280 accept 0 ALIGNMENT 842 Y12-11b09.q1k chr07 1050 41 956556 957584 C 1010 96.53 1271 accept 0 ALIGNMENT 0 Y12-11b09.q1k chr13 787 161 587687 587686 C 627 0.00 1271 reject_low 2 ALIGNMENT 0 Y12-11b09.q1k chr04 787 162 390425 390424 C 626 0.00 1271 reject_low 1 ALIGNMENT 0 Y12-11b09.q1k chr13 107 62 587739 587738 C 46 0.00 1271 reject_low 2 ALIGNMENT 993 Y12-11b11.p1k chr02 1289 16 753790 755069 C 1274 94.51 1304 accept 0 ALIGNMENT 782 Y12-11b11.q1k chr02 33 1057 750794 751804 F 1025 94.15 1381 accept 0 ALIGNMENT 1044 Y12-11b13.p1k chr14 14 1218 262154 263360 F 1205 96.51 1258 accept 0 ALIGNMENT 1003 Y12-11b13.q1k chr14 1223 32 265933 267137 C 1192 95.89 1280 accept 0 ALIGNMENT 872 Y12-11b15.p1k chr15 20 1022 315424 316429 F 1003 96.71 1319 reject_bad_break 0 ALIGNMENT 34 Y12-11b15.p1k chr15 1031 1172 316451 316594 F 142 76.06 1319 reject_bad_break 0 ALIGNMENT 987 Y12-11b15.q1k chr15 1268 34 319066 320291 C 1235 95.06 1303 reject_bad_break 0 ALIGNMENT 0 Y12-11b15.p1k chr15 1023 1030 316430 316450 F 8 0.00 1319 reject_bad_break 0 ALIGNMENT 1045 Y12-11b16.p1k chr09 17 1264 229128 230386 F 1248 96.23 1326 accept 0 ALIGNMENT 986 Y12-11b16.q1k chr09 1140 38 232734 233843 C 1103 97.55 1272 accept 0 ALIGNMENT 0 Y12-11b17.p1k chr14 805 483 604230 604229 C 323 0.00 1238 reject_low 1 ALIGNMENT 0 Y12-11b17.p1k chr14 444 62 604267 604266 C 383 0.00 1238 reject_low 1 ALIGNMENT 21 Y12-11b17.p1k chr14 482 445 604229 604266 C 38 94.74 1238 reject_low 1 ALIGNMENT 987 Y12-11b17.p1k chr12 1206 22 646204 647407 C 1185 95.27 1238 accept 0 ALIGNMENT 1047 Y12-11b17.q1k chr12 38 1300 642194 643436 F 1263 95.72 1304 accept 0 ALIGNMENT 0 Y12-11b18.q1k chr15 859 454 282165 282164 C 406 0.00 1274 reject_low 17 ALIGNMENT 29 Y12-11b18.q1k chr02 944 992 198167 198215 F 49 87.76 1274 reject_low 19 ALIGNMENT 0 Y12-11b18.q1k chr15 455 859 226680 226679 F 405 0.00 1274 reject_low 7 ALIGNMENT 0 Y12-11b18.q1k chr05 455 859 61961 61960 F 405 0.00 1274 reject_low 14 ALIGNMENT 0 Y12-11b18.q1k chr03 456 859 142770 142769 F 404 0.00 1274 reject_low 10 ALIGNMENT 0 Y12-11b18.q1k chr10 378 62 531817 531816 C 317 0.00 1274 reject_low 12 ALIGNMENT 0 Y12-11b18.q1k chr15 62 376 226603 226602 F 315 0.00 1274 reject_low 7 ALIGNMENT 0 Y12-11b18.q1k chr10 859 455 531742 531741 C 405 0.00 1274 reject_low 12 ALIGNMENT 0 Y12-11b18.q1k chr06 859 455 162222 162221 C 405 0.00 1274 reject_low 11 ALIGNMENT 0 Y12-11b18.q1k chr07 62 376 930950 930949 F 315 0.00 1274 reject_low 6 ALIGNMENT 0 Y12-11b18.q1k chr10 455 859 396713 396712 F 405 0.00 1274 reject_low 16 ALIGNMENT 0 Y12-11b18.q1k chr06 62 382 180966 180965 F 321 0.00 1274 reject_low 15 ALIGNMENT 0 Y12-11b18.q1k chr15 786 62 113384 113383 C 725 0.00 1274 reject_low 13 ALIGNMENT 75 Y12-11b18.q1k chr04 454 377 992825 992902 C 78 98.72 1274 reject_low 4 ALIGNMENT 0 Y12-11b18.q1k chr13 454 859 183968 183967 F 406 0.00 1274 reject_low 8 ALIGNMENT 75 Y12-11b18.q1k chr15 377 454 226603 226680 F 78 98.72 1274 reject_low 7 ALIGNMENT 0 Y12-11b18.q1k chr15 382 62 282235 282234 C 321 0.00 1274 reject_low 17 ALIGNMENT 70 Y12-11b18.q1k chr15 453 383 282164 282234 C 71 100.00 1274 reject_low 17 ALIGNMENT 67 Y12-11b18.q1k chr12 547 706 688371 688530 F 160 83.75 1274 reject_low 2 ALIGNMENT 72 Y12-11b18.q1k chr05 383 454 61890 61961 F 72 100.00 1274 reject_low 14 ALIGNMENT 0 Y12-11b18.q1k chr16 62 582 571724 571723 F 521 0.00 1274 reject_low 18 ALIGNMENT 75 Y12-11b18.q1k chr07 454 377 845653 845730 C 78 98.72 1274 reject_low 5 ALIGNMENT 933 Y12-11b18.q1k chr16 1228 37 571483 572682 C 1192 94.04 1274 accept 0 ALIGNMENT 75 Y12-11b18.q1k chr02 380 454 197629 197703 F 75 100.00 1274 reject_low 19 ALIGNMENT 0 Y12-11b18.q1k chr16 62 606 560815 560814 F 545 0.00 1274 reject_low 1 ALIGNMENT 0 Y12-11b18.q1k chr16 663 934 571804 572074 F 272 0.00 1274 reject_low 18 ALIGNMENT 73 Y12-11b18.q1k chr10 454 379 531741 531816 C 76 98.68 1274 reject_low 12 ALIGNMENT 79 Y12-11b18.q1k chr04 459 378 83543 83624 C 82 98.78 1274 reject_low 3 ALIGNMENT 0 Y12-11b18.q1k chr07 859 455 845654 845653 C 405 0.00 1274 reject_low 5 ALIGNMENT 22 Y12-11b18.q1k chr15 855 787 113315 113383 C 69 81.16 1274 reject_low 13 ALIGNMENT 0 Y12-11b18.q1k chr04 859 460 83544 83543 C 400 0.00 1274 reject_low 3 ALIGNMENT 155 Y12-11b18.q1k chr16 607 940 560815 561145 F 334 84.43 1274 reject_low 1 ALIGNMENT 0 Y12-11b18.q1k chr04 377 62 83625 83624 C 316 0.00 1274 reject_low 3 ALIGNMENT 0 Y12-11b18.q1k chr12 707 859 688530 688529 F 153 0.00 1274 reject_low 2 ALIGNMENT 0 Y12-11b18.q1k chr06 455 859 181037 181036 F 405 0.00 1274 reject_low 15 ALIGNMENT 0 Y12-11b18.q1k chr04 376 62 992903 992902 C 315 0.00 1274 reject_low 4 ALIGNMENT 0 Y12-11b18.q1k chr16 859 455 860375 860374 C 405 0.00 1274 reject_low 9 ALIGNMENT 0 Y12-11b18.q1k chr12 62 546 688371 688370 F 485 0.00 1274 reject_low 2 ALIGNMENT 72 Y12-11b18.q1k chr10 383 454 396642 396713 F 72 100.00 1274 reject_low 16 ALIGNMENT 0 Y12-11b18.q1k chr05 62 382 61890 61889 F 321 0.00 1274 reject_low 14 ALIGNMENT 29 Y12-11b18.q1k chr16 935 994 572075 572134 F 60 85.00 1274 reject_low 18 ALIGNMENT 0 Y12-11b18.q1k chr06 378 62 162297 162296 C 317 0.00 1274 reject_low 11 ALIGNMENT 72 Y12-11b18.q1k chr13 377 453 183891 183968 F 77 98.70 1274 reject_low 8 ALIGNMENT 0 Y12-11b18.q1k chr04 859 455 992826 992825 C 405 0.00 1274 reject_low 4 ALIGNMENT 53 Y12-11b18.q1k chr16 583 662 571724 571803 F 80 90.00 1274 reject_low 18 ALIGNMENT 0 Y12-11b18.q1k chr07 376 62 845731 845730 C 315 0.00 1274 reject_low 5 ALIGNMENT 73 Y12-11b18.q1k chr03 383 455 142698 142770 F 73 100.00 1274 reject_low 10 ALIGNMENT 0 Y12-11b18.q1k chr07 455 859 931027 931026 F 405 0.00 1274 reject_low 6 ALIGNMENT 975 Y12-11b18.p1k chr16 17 1175 566208 567380 F 1159 95.34 1235 accept 0 ALIGNMENT 0 Y12-11b18.q1k chr02 455 943 197704 198166 F 489 0.00 1274 reject_low 19 ALIGNMENT 0 Y12-11b18.q1k chr10 62 382 396642 396641 F 321 0.00 1274 reject_low 16 ALIGNMENT 0 Y12-11b18.q1k chr02 62 379 197629 197628 F 318 0.00 1274 reject_low 19 ALIGNMENT 0 Y12-11b18.q1k chr13 62 376 183891 183890 F 315 0.00 1274 reject_low 8 ALIGNMENT 72 Y12-11b18.q1k chr06 383 454 180966 181037 F 72 100.00 1274 reject_low 15 ALIGNMENT 75 Y12-11b18.q1k chr07 377 454 930950 931027 F 78 98.72 1274 reject_low 6 ALIGNMENT 0 Y12-11b18.q1k chr16 377 62 860452 860451 C 316 0.00 1274 reject_low 9 ALIGNMENT 73 Y12-11b18.q1k chr06 454 379 162221 162296 C 76 98.68 1274 reject_low 11 ALIGNMENT 73 Y12-11b18.q1k chr16 454 378 860374 860451 C 77 98.70 1274 reject_low 9 ALIGNMENT 0 Y12-11b18.q1k chr03 62 382 142698 142697 F 321 0.00 1274 reject_low 10 ALIGNMENT 1025 Y12-11b19.p1k chr16 1227 22 216710 217927 C 1206 95.69 1276 accept 0 ALIGNMENT 1007 Y12-11b19.q1k chr16 40 1240 213055 214260 F 1201 95.42 1269 accept 0 ALIGNMENT 835 Y12-11b20.p1k chr12 30 1272 890848 892069 F 1243 90.10 1295 accept 0 ALIGNMENT 994 Y12-11b20.q1k chr12 1176 32 894024 895162 C 1145 96.86 1283 accept 0 ALIGNMENT 984 Y12-11b21.q1k chr10 25 1217 17896 19083 F 1193 95.05 1222 reject_low 2 ALIGNMENT 886 Y12-11b21.p1k chr09 1131 23 20817 21931 C 1109 94.77 1333 accept_tel 0 ALIGNMENT 489 Y12-11b21.q1k chr07 25 664 1068357 1068997 F 640 92.34 1222 reject_low 3 ALIGNMENT 890 Y12-11b21.p1k chr15 1131 23 26572 27684 C 1109 94.86 1333 reject_low 1 ALIGNMENT 887 Y12-11b21.q1k chr15 25 1171 23653 24808 F 1147 93.20 1222 reject_low 1 ALIGNMENT 281 Y12-11b21.p1k chr10 1131 704 20797 21229 C 428 90.19 1333 reject_low 2 ALIGNMENT 0 Y12-11b21.q1k chr02 820 654 805354 805353 C 167 0.00 1222 reject_low 4 ALIGNMENT 0 Y12-11b21.p1k chr10 703 62 21230 21229 C 642 0.00 1333 reject_low 2 ALIGNMENT 980 Y12-11b21.q1k chr09 25 1217 17913 19101 F 1193 94.97 1222 accept_tel 0 ALIGNMENT 140 Y12-11b21.q1k chr10 172 625 25609 26062 F 454 77.09 1222 reject_low 6 ALIGNMENT 0 Y12-11b21.q1k chr07 665 820 1068997 1068996 F 156 0.00 1222 reject_low 3 ALIGNMENT 298 Y12-11b21.q1k chr02 653 25 805353 805982 C 629 82.83 1222 reject_low 4 ALIGNMENT 0 Y12-11b21.q1k chr07 820 654 1076614 1076613 C 167 0.00 1222 reject_low 5 ALIGNMENT 0 Y12-11b21.q1k chr10 626 820 26062 26061 F 195 0.00 1222 reject_low 6 ALIGNMENT 0 Y12-11b21.q1k chr10 62 171 25609 25608 F 110 0.00 1222 reject_low 6 ALIGNMENT 298 Y12-11b21.q1k chr07 653 25 1076613 1077242 C 629 82.83 1222 reject_low 5 ALIGNMENT 878 Y12-11b22.p1k chr15 18 1068 199712 200787 F 1051 96.38 1306 accept 0 ALIGNMENT 1027 Y12-11b22.q1k chr15 1245 36 201752 202951 C 1210 96.03 1253 accept 0 ALIGNMENT 891 Y12-11b23.p1k chr11 15 1102 569847 570926 F 1088 95.77 1199 accept 0 ALIGNMENT 960 Y12-11b23.q1k chr11 1118 31 573754 574827 C 1088 97.61 1205 accept 0 ALIGNMENT 815 Y12-11b24.q1k chr16 31 960 179868 180785 F 930 97.85 1239 accept 0 ALIGNMENT 787 Y12-11b24.p1k chr16 1157 237 183488 184402 C 921 96.63 1244 accept 0 ALIGNMENT 915 Y12-11c02.q1k chr14 1118 37 559474 560565 C 1082 95.75 1283 accept 0 ALIGNMENT 1012 Y12-11c02.p1k chr14 15 1201 554209 555409 F 1187 96.38 1256 accept 0 ALIGNMENT 1028 Y12-11c03.p1k chr07 1245 18 798795 800031 C 1228 95.44 1327 accept 0 ALIGNMENT 952 Y12-11c03.q1k chr07 30 1278 795571 796818 F 1249 93.67 1335 accept 0 ALIGNMENT 1024 Y12-11c04.p1k chr05 15 1257 71167 72424 F 1243 95.33 1310 accept 0 ALIGNMENT 974 Y12-11c04.q1k chr05 1185 37 74296 75461 C 1149 96.08 1307 accept 0 ALIGNMENT 1090 Y12-11c05.p1k chr12 19 1228 462976 464198 F 1210 97.36 1312 reject_low 1 ALIGNMENT 1099 Y12-11c05.p1k chr12 19 1284 453839 455122 F 1266 96.37 1312 accept 0 ALIGNMENT 969 Y12-11c05.q1k chr12 1194 33 466926 468098 C 1162 95.61 1335 reject_low 1 ALIGNMENT 969 Y12-11c05.q1k chr12 1194 33 457789 458961 C 1162 95.61 1335 accept 0 ALIGNMENT 611 Y12-11c06.q1k chr14 1066 33 479020 480066 C 1034 87.33 1311 accept 0 ALIGNMENT 914 Y12-11c06.p1k chr14 18 1185 475163 476324 F 1168 94.35 1308 accept 0 ALIGNMENT 504 Y12-11c08.q1k chr13 1062 311 146494 147250 C 752 89.63 1302 reject_low 1 ALIGNMENT 1048 Y12-11c08.p1k chr12 1270 18 1021247 1022507 C 1253 96.01 1284 accept 0 ALIGNMENT 960 Y12-11c08.q1k chr12 36 1143 1017861 1018981 F 1108 96.75 1302 accept 0 ALIGNMENT 0 Y12-11c08.q1k chr13 310 62 147251 147250 C 249 0.00 1302 reject_low 1 ALIGNMENT 0 Y12-11c10.p1k chr15 149 62 663889 663888 C 88 0.00 1247 reject_low 5 ALIGNMENT 82 Y12-11c10.p1k chr13 233 135 372437 372536 C 99 94.95 1247 reject_low 1 ALIGNMENT 0 Y12-11c10.p1k chr13 866 234 372438 372437 C 633 0.00 1247 reject_low 1 ALIGNMENT 0 Y12-11c10.p1k chr11 866 234 307783 307782 C 633 0.00 1247 reject_low 4 ALIGNMENT 0 Y12-11c10.p1k chr13 134 62 372537 372536 C 73 0.00 1247 reject_low 1 ALIGNMENT 0 Y12-11c10.p1k chr15 866 232 663808 663807 C 635 0.00 1247 reject_low 5 ALIGNMENT 80 Y12-11c10.p1k chr07 233 150 73821 73904 C 84 98.81 1247 reject_low 3 ALIGNMENT 0 Y12-11c10.p1k chr07 149 62 73905 73904 C 88 0.00 1247 reject_low 3 ALIGNMENT 0 Y12-11c10.p1k chr10 235 866 378357 378356 F 632 0.00 1247 reject_low 6 ALIGNMENT 78 Y12-11c10.p1k chr08 233 152 85287 85368 C 82 98.78 1247 reject_low 8 ALIGNMENT 79 Y12-11c10.p1k chr12 232 153 687855 687934 C 80 100.00 1247 reject_low 9 ALIGNMENT 79 Y12-11c10.p1k chr15 231 150 663807 663888 C 82 98.78 1247 reject_low 5 ALIGNMENT 78 Y12-11c10.p1k chr10 153 234 378276 378357 F 82 98.78 1247 reject_low 6 ALIGNMENT 0 Y12-11c10.p1k chr10 62 152 378276 378275 F 91 0.00 1247 reject_low 6 ALIGNMENT 0 Y12-11c10.p1k chr08 866 234 85288 85287 C 633 0.00 1247 reject_low 8 ALIGNMENT 0 Y12-11c10.p1k chr12 866 233 687856 687855 C 634 0.00 1247 reject_low 9 ALIGNMENT 0 Y12-11c10.p1k chr13 152 62 420661 420660 C 91 0.00 1247 reject_low 10 ALIGNMENT 0 Y12-11c10.p1k chr11 149 62 307866 307865 C 88 0.00 1247 reject_low 4 ALIGNMENT 1038 Y12-11c10.p1k chr07 15 1247 823347 824581 F 1233 95.70 1247 accept 0 ALIGNMENT 75 Y12-11c10.p1k chr07 226 152 412297 412371 C 75 100.00 1247 reject_low 12 ALIGNMENT 0 Y12-11c10.p1k chr11 227 866 379396 379395 F 640 0.00 1247 reject_low 13 ALIGNMENT 0 Y12-11c10.p1k chr08 151 62 85369 85368 C 90 0.00 1247 reject_low 8 ALIGNMENT 0 Y12-11c10.p1k chr07 866 234 73822 73821 C 633 0.00 1247 reject_low 3 ALIGNMENT 0 Y12-11c10.p1k chr05 62 152 438696 438695 F 91 0.00 1247 reject_low 11 ALIGNMENT 0 Y12-11c10.p1k chr11 62 152 379323 379322 F 91 0.00 1247 reject_low 13 ALIGNMENT 0 Y12-11c10.p1k chr13 866 239 586624 586623 C 628 0.00 1247 reject_low 2 ALIGNMENT 80 Y12-11c10.p1k chr11 233 150 307782 307865 C 84 98.81 1247 reject_low 4 ALIGNMENT 981 Y12-11c10.q1k chr07 1157 34 826177 827296 C 1124 96.89 1338 accept 0 ALIGNMENT 77 Y12-11c10.p1k chr05 153 233 438696 438776 F 81 98.77 1247 reject_low 11 ALIGNMENT 0 Y12-11c10.p1k chr07 151 62 412372 412371 C 90 0.00 1247 reject_low 12 ALIGNMENT 80 Y12-11c10.p1k chr05 152 232 469451 469531 F 81 100.00 1247 reject_low 7 ALIGNMENT 0 Y12-11c10.p1k chr13 866 232 420583 420582 C 635 0.00 1247 reject_low 10 ALIGNMENT 0 Y12-11c10.p1k chr07 866 227 412298 412297 C 640 0.00 1247 reject_low 12 ALIGNMENT 74 Y12-11c10.p1k chr11 153 226 379323 379396 F 74 100.00 1247 reject_low 13 ALIGNMENT 86 Y12-11c10.p1k chr13 238 152 586623 586709 C 87 100.00 1247 reject_low 2 ALIGNMENT 0 Y12-11c10.p1k chr13 151 62 586710 586709 C 90 0.00 1247 reject_low 2 ALIGNMENT 0 Y12-11c10.p1k chr05 234 866 438776 438775 F 633 0.00 1247 reject_low 11 ALIGNMENT 0 Y12-11c10.p1k chr12 152 62 687935 687934 C 91 0.00 1247 reject_low 9 ALIGNMENT 0 Y12-11c10.p1k chr05 233 866 469531 469530 F 634 0.00 1247 reject_low 7 ALIGNMENT 79 Y12-11c10.p1k chr13 231 153 420582 420660 C 79 100.00 1247 reject_low 10 ALIGNMENT 0 Y12-11c10.p1k chr05 62 151 469451 469450 F 90 0.00 1247 reject_low 7 ALIGNMENT 414 Y12-11c11.p1k chr07 885 116 720423 721194 C 770 85.84 1332 accept 0 ALIGNMENT 986 Y12-11c12.p1k chr15 1186 11 210362 211550 C 1176 95.58 1340 accept 0 ALIGNMENT 987 Y12-11c12.q1k chr15 22 1247 207651 208882 F 1226 94.37 1320 accept 0 ALIGNMENT 573 Y12-11c13.p1k chr11 150 926 80936 81713 F 777 91.63 1397 accept_chi 1 ALIGNMENT 944 Y12-11c13.q1k chr07 31 1186 942746 943887 F 1156 95.07 1330 accept_chi 0 ALIGNMENT 119 Y12-11c15.q1k chr16 548 813 856224 856498 F 266 83.83 1320 reject_low 13 ALIGNMENT 0 Y12-11c15.q1k chr12 551 62 656731 656730 C 490 0.00 1320 reject_low 27 ALIGNMENT 114 Y12-11c15.q1k chr16 558 813 850646 850910 F 256 83.59 1320 reject_low 20 ALIGNMENT 126 Y12-11c15.q1k chr05 548 813 443404 443677 F 266 84.59 1320 reject_low 6 ALIGNMENT 0 Y12-11c15.q1k chr08 814 862 543889 543888 F 49 0.00 1320 reject_low 5 ALIGNMENT 0 Y12-11c15.q1k chr10 862 814 472430 472429 C 49 0.00 1320 reject_low 19 ALIGNMENT 131 Y12-11c15.q1k chr16 813 558 560530 560788 C 256 85.55 1320 reject_low 12 ALIGNMENT 0 Y12-11c15.q1k chr07 62 551 817413 817412 F 490 0.00 1320 reject_low 4 ALIGNMENT 0 Y12-11c15.q1k chr13 814 862 372981 372980 F 49 0.00 1320 reject_low 18 ALIGNMENT 0 Y12-11c15.q1k chr04 62 557 434441 434440 F 496 0.00 1320 reject_low 25 ALIGNMENT 0 Y12-11c15.q1k chr03 550 62 149794 149793 C 489 0.00 1320 reject_low 1 ALIGNMENT 134 Y12-11c15.q1k chr14 558 813 102213 102471 F 256 85.94 1320 reject_low 8 ALIGNMENT 0 Y12-11c15.q1k chr07 862 829 327947 327946 C 34 0.00 1320 reject_low 9 ALIGNMENT 0 Y12-11c15.q1k chr14 62 557 102213 102212 F 496 0.00 1320 reject_low 8 ALIGNMENT 0 Y12-11c15.q1k chr12 862 814 650879 650878 C 49 0.00 1320 reject_low 28 ALIGNMENT 131 Y12-11c15.q1k chr13 558 813 362607 362865 F 256 85.55 1320 reject_low 11 ALIGNMENT 0 Y12-11c15.q1k chr05 557 62 138533 138532 C 496 0.00 1320 reject_low 21 ALIGNMENT 0 Y12-11c15.q1k chr05 62 547 443404 443403 F 486 0.00 1320 reject_low 6 ALIGNMENT 86 Y12-11c15.q1k chr12 832 559 657484 657755 C 274 79.93 1320 reject_low 24 ALIGNMENT 121 Y12-11c15.q1k chr01 558 813 160260 160523 F 256 84.38 1320 reject_low 15 ALIGNMENT 0 Y12-11c15.q1k chr02 862 814 221093 221092 C 49 0.00 1320 reject_low 14 ALIGNMENT 0 Y12-11c15.q1k chr13 814 862 357283 357282 F 49 0.00 1320 reject_low 10 ALIGNMENT 0 Y12-11c15.q1k chr08 62 551 543625 543624 F 490 0.00 1320 reject_low 5 ALIGNMENT 79 Y12-11c15.q1k chr12 813 558 650878 651138 C 256 80.08 1320 reject_low 28 ALIGNMENT 0 Y12-11c15.q1k chr14 814 862 96889 96888 F 49 0.00 1320 reject_low 7 ALIGNMENT 0 Y12-11c15.q1k chr12 862 834 688405 688404 C 29 0.00 1320 reject_low 26 ALIGNMENT 131 Y12-11c15.q1k chr13 558 813 357025 357283 F 256 85.55 1320 reject_low 10 ALIGNMENT 0 Y12-11c15.q1k chr13 62 557 362607 362606 F 496 0.00 1320 reject_low 11 ALIGNMENT 0 Y12-11c15.q1k chr06 559 62 138217 138216 C 498 0.00 1320 reject_low 30 ALIGNMENT 0 Y12-11c15.q1k chr06 862 751 137767 137766 C 112 0.00 1320 reject_low 29 ALIGNMENT 0 Y12-11c15.q1k chr12 862 833 657485 657484 C 30 0.00 1320 reject_low 24 ALIGNMENT 134 Y12-11c15.q1k chr14 558 813 96631 96889 F 256 85.94 1320 reject_low 7 ALIGNMENT 115 Y12-11c15.q1k chr13 552 813 372711 372981 F 262 83.59 1320 reject_low 18 ALIGNMENT 0 Y12-11c15.q1k chr12 609 62 688631 688630 C 548 0.00 1320 reject_low 26 ALIGNMENT 109 Y12-11c15.q1k chr02 755 580 327176 327352 C 176 89.77 1320 reject_low 23 ALIGNMENT 0 Y12-11c15.q1k chr13 814 862 362865 362864 F 49 0.00 1320 reject_low 11 ALIGNMENT 0 Y12-11c15.q1k chr03 557 62 83015 83014 C 496 0.00 1320 reject_low 17 ALIGNMENT 58 Y12-11c15.q1k chr06 813 560 143587 143843 C 254 77.95 1320 reject_low 31 ALIGNMENT 114 Y12-11c15.q1k chr10 813 558 472429 472693 C 256 83.59 1320 reject_low 19 ALIGNMENT 0 Y12-11c15.q1k chr16 814 862 850910 850909 F 49 0.00 1320 reject_low 20 ALIGNMENT 106 Y12-11c15.q1k chr04 541 751 520173 520385 F 211 85.31 1320 reject_low 3 ALIGNMENT 0 Y12-11c15.q1k chr12 862 814 656465 656464 C 49 0.00 1320 reject_low 27 ALIGNMENT 123 Y12-11c15.q1k chr03 850 551 149496 149793 C 300 82.67 1320 reject_low 1 ALIGNMENT 70 Y12-11c15.q1k chr12 833 610 688404 688630 C 224 79.02 1320 reject_low 26 ALIGNMENT 116 Y12-11c15.q1k chr12 549 843 365823 366121 F 295 81.36 1320 reject_low 2 ALIGNMENT 0 Y12-11c15.q1k chr12 558 62 657756 657755 C 497 0.00 1320 reject_low 24 ALIGNMENT 0 Y12-11c15.q1k chr04 814 862 434699 434698 F 49 0.00 1320 reject_low 25 ALIGNMENT 0 Y12-11c15.q1k chr01 814 862 160523 160522 F 49 0.00 1320 reject_low 15 ALIGNMENT 0 Y12-11c15.q1k chr03 862 814 82752 82751 C 49 0.00 1320 reject_low 17 ALIGNMENT 101 Y12-11c15.q1k chr04 558 813 434441 434699 F 256 82.81 1320 reject_low 25 ALIGNMENT 69 Y12-11c15.q1k chr06 750 606 137766 137904 C 145 86.90 1320 reject_low 29 ALIGNMENT 0 Y12-11c15.q1k chr02 557 62 221353 221352 C 496 0.00 1320 reject_low 14 ALIGNMENT 0 Y12-11c15.q1k chr05 814 862 443677 443676 F 49 0.00 1320 reject_low 6 ALIGNMENT 0 Y12-11c15.q1k chr06 862 814 143588 143587 C 49 0.00 1320 reject_low 31 ALIGNMENT 0 Y12-11c15.q1k chr16 814 862 856498 856497 F 49 0.00 1320 reject_low 13 ALIGNMENT 0 Y12-11c15.q1k chr06 605 62 137905 137904 C 544 0.00 1320 reject_low 29 ALIGNMENT 0 Y12-11c15.q1k chr07 814 862 817677 817676 F 49 0.00 1320 reject_low 4 ALIGNMENT 0 Y12-11c15.q1k chr01 62 557 160260 160259 F 496 0.00 1320 reject_low 15 ALIGNMENT 0 Y12-11c15.q1k chr02 579 62 327353 327352 C 518 0.00 1320 reject_low 23 ALIGNMENT 135 Y12-11c15.q1k chr07 552 813 817413 817677 F 262 85.88 1320 reject_low 4 ALIGNMENT 0 Y12-11c15.q1k chr01 814 862 166111 166110 F 49 0.00 1320 reject_low 16 ALIGNMENT 0 Y12-11c15.q1k chr01 62 557 165848 165847 F 496 0.00 1320 reject_low 16 ALIGNMENT 121 Y12-11c15.q1k chr01 558 813 165848 166111 F 256 84.38 1320 reject_low 16 ALIGNMENT 1075 Y12-11c15.p1k chr06 15 1274 153822 155096 F 1260 96.35 1332 accept 0 ALIGNMENT 0 Y12-11c15.q1k chr16 62 547 856224 856223 F 486 0.00 1320 reject_low 13 ALIGNMENT 0 Y12-11c15.q1k chr07 862 752 876073 876072 C 111 0.00 1320 reject_low 22 ALIGNMENT 0 Y12-11c15.q1k chr16 557 62 560789 560788 C 496 0.00 1320 reject_low 12 ALIGNMENT 0 Y12-11c15.q1k chr06 862 814 137961 137960 C 49 0.00 1320 reject_low 30 ALIGNMENT 0 Y12-11c15.q1k chr12 62 548 365823 365822 F 487 0.00 1320 reject_low 2 ALIGNMENT 0 Y12-11c15.q1k chr07 557 62 876264 876263 C 496 0.00 1320 reject_low 22 ALIGNMENT 0 Y12-11c15.q1k chr05 862 814 138274 138273 C 49 0.00 1320 reject_low 21 ALIGNMENT 113 Y12-11c15.q1k chr05 813 558 138273 138532 C 256 83.59 1320 reject_low 21 ALIGNMENT 109 Y12-11c15.q1k chr07 751 558 876072 876263 C 194 88.14 1320 reject_low 22 ALIGNMENT 0 Y12-11c15.q1k chr16 862 814 560531 560530 C 49 0.00 1320 reject_low 12 ALIGNMENT 124 Y12-11c15.q1k chr02 813 558 221092 221352 C 256 84.77 1320 reject_low 14 ALIGNMENT 0 Y12-11c15.q1k chr10 557 62 472694 472693 C 496 0.00 1320 reject_low 19 ALIGNMENT 0 Y12-11c15.q1k chr07 555 62 328211 328210 C 494 0.00 1320 reject_low 9 ALIGNMENT 0 Y12-11c15.q1k chr16 62 557 850646 850645 F 496 0.00 1320 reject_low 20 ALIGNMENT 0 Y12-11c15.q1k chr13 62 551 372711 372710 F 490 0.00 1320 reject_low 18 ALIGNMENT 1003 Y12-11c15.q1k chr06 1244 34 157960 159187 C 1211 96.20 1320 accept 0 ALIGNMENT 114 Y12-11c15.q1k chr07 828 556 327946 328210 C 273 83.52 1320 reject_low 9 ALIGNMENT 0 Y12-11c15.q1k chr12 844 862 366121 366120 F 19 0.00 1320 reject_low 2 ALIGNMENT 0 Y12-11c15.q1k chr04 62 540 520173 520172 F 479 0.00 1320 reject_low 3 ALIGNMENT 0 Y12-11c15.q1k chr14 814 862 102471 102470 F 49 0.00 1320 reject_low 8 ALIGNMENT 135 Y12-11c15.q1k chr08 552 813 543625 543889 F 262 85.88 1320 reject_low 5 ALIGNMENT 0 Y12-11c15.q1k chr13 62 557 357025 357024 F 496 0.00 1320 reject_low 10 ALIGNMENT 0 Y12-11c15.q1k chr02 862 756 327177 327176 C 107 0.00 1320 reject_low 23 ALIGNMENT 0 Y12-11c15.q1k chr14 62 557 96631 96630 F 496 0.00 1320 reject_low 7 ALIGNMENT 58 Y12-11c15.q1k chr06 813 560 137960 138216 C 254 77.95 1320 reject_low 30 ALIGNMENT 0 Y12-11c15.q1k chr12 557 62 651139 651138 C 496 0.00 1320 reject_low 28 ALIGNMENT 81 Y12-11c15.q1k chr12 813 552 656464 656730 C 262 80.15 1320 reject_low 27 ALIGNMENT 121 Y12-11c15.q1k chr03 813 558 82751 83014 C 256 84.38 1320 reject_low 17 ALIGNMENT 0 Y12-11c15.q1k chr04 752 862 520385 520384 F 111 0.00 1320 reject_low 3 ALIGNMENT 0 Y12-11c15.q1k chr06 559 62 143844 143843 C 498 0.00 1320 reject_low 31 ALIGNMENT 77 Y12-11c17.p1k chr03 870 951 82451 82532 F 82 97.56 1348 reject_low 5 ALIGNMENT 0 Y12-11c17.p1k chr05 878 62 177171 177170 C 817 0.00 1348 reject_low 12 ALIGNMENT 72 Y12-11c17.p1k chr05 951 879 177098 177170 C 73 98.63 1348 reject_low 12 ALIGNMENT 78 Y12-11c17.p1k chr13 951 869 290800 290882 C 83 97.59 1348 reject_low 4 ALIGNMENT 0 Y12-11c17.p1k chr05 62 874 487321 487320 F 813 0.00 1348 reject_low 10 ALIGNMENT 1018 Y12-11c17.q1k chr16 1196 35 213325 214501 C 1162 96.90 1285 accept 0 ALIGNMENT 0 Y12-11c17.p1k chr09 878 62 370487 370486 C 817 0.00 1348 reject_low 7 ALIGNMENT 84 Y12-11c17.p1k chr07 960 876 328577 328661 C 85 98.82 1348 reject_low 3 ALIGNMENT 77 Y12-11c17.p1k chr07 951 870 541854 541935 C 82 97.56 1348 reject_low 6 ALIGNMENT 0 Y12-11c17.p1k chr12 879 62 797250 797249 C 818 0.00 1348 reject_low 11 ALIGNMENT 0 Y12-11c17.p1k chr05 878 62 355003 355002 C 817 0.00 1348 reject_low 13 ALIGNMENT 74 Y12-11c17.p1k chr07 871 975 401521 401624 F 105 90.48 1348 reject_low 1 ALIGNMENT 0 Y12-11c17.p1k chr03 62 869 82451 82450 F 808 0.00 1348 reject_low 5 ALIGNMENT 0 Y12-11c17.p1k chr07 875 62 328662 328661 C 814 0.00 1348 reject_low 3 ALIGNMENT 0 Y12-11c17.p1k chr13 868 62 290883 290882 C 807 0.00 1348 reject_low 4 ALIGNMENT 1071 Y12-11c17.p1k chr16 20 1283 209329 210600 F 1264 96.44 1348 accept 0 ALIGNMENT 0 Y12-11c17.p1k chr02 864 62 645248 645247 C 803 0.00 1348 reject_low 2 ALIGNMENT 76 Y12-11c17.p1k chr11 875 951 141018 141094 F 77 98.70 1348 reject_low 8 ALIGNMENT 0 Y12-11c17.p1k chr10 62 871 115926 115925 F 810 0.00 1348 reject_low 9 ALIGNMENT 72 Y12-11c17.p1k chr05 951 879 354930 355002 C 73 98.63 1348 reject_low 13 ALIGNMENT 76 Y12-11c17.p1k chr02 957 865 645156 645247 C 93 94.62 1348 reject_low 2 ALIGNMENT 0 Y12-11c17.p1k chr09 870 62 197670 197669 C 809 0.00 1348 reject_low 14 ALIGNMENT 0 Y12-11c17.p1k chr07 62 870 401521 401520 F 809 0.00 1348 reject_low 1 ALIGNMENT 73 Y12-11c17.p1k chr05 875 951 487321 487397 F 77 97.40 1348 reject_low 10 ALIGNMENT 72 Y12-11c17.p1k chr12 952 880 797177 797249 C 73 98.63 1348 reject_low 11 ALIGNMENT 73 Y12-11c17.p1k chr10 872 951 115926 116005 F 80 96.25 1348 reject_low 9 ALIGNMENT 59 Y12-11c17.p1k chr09 951 871 197589 197669 C 81 90.12 1348 reject_low 14 ALIGNMENT 0 Y12-11c17.p1k chr11 62 874 141018 141017 F 813 0.00 1348 reject_low 8 ALIGNMENT 0 Y12-11c17.p1k chr07 869 62 541936 541935 C 808 0.00 1348 reject_low 6 ALIGNMENT 73 Y12-11c17.p1k chr09 958 879 370407 370486 C 80 96.25 1348 reject_low 7 ALIGNMENT 1053 Y12-11c18.p1k chr07 1256 13 35486 36748 C 1244 95.98 1312 accept 0 ALIGNMENT 1008 Y12-11c18.q1k chr07 37 1181 32308 33462 F 1145 97.38 1282 accept 0 ALIGNMENT 963 Y12-11c20.p1k chr15 1199 19 867960 869146 C 1181 95.26 1281 accept 0 ALIGNMENT 996 Y12-11c20.q1k chr15 34 1185 863424 864586 F 1152 96.61 1265 accept 0 ALIGNMENT 993 Y12-11c21.q1k chr10 34 1260 395465 396691 F 1227 94.78 1260 accept 0 ALIGNMENT 1019 Y12-11c21.p1k chr10 1228 34 398428 399632 C 1195 96.32 1268 accept 0 ALIGNMENT 1043 Y12-11c22.p1k chr04 1264 21 1013626 1014855 C 1244 96.06 1272 accept 0 ALIGNMENT 919 Y12-11c22.q1k chr04 32 1259 1009989 1011201 F 1228 93.49 1259 accept 0 ALIGNMENT 22 Y12-11c24.q1k chr07 692 656 307182 307218 C 37 97.30 1288 reject_low 2 ALIGNMENT 574 Y12-11c24.q1k chr15 31 934 195720 196594 F 904 89.82 1288 accept_chi 0 ALIGNMENT 0 Y12-11c24.q1k chr07 655 274 307219 307218 C 382 0.00 1288 reject_low 2 ALIGNMENT 527 Y12-11c24.p1k chr04 848 198 1014058 1014705 C 651 94.62 1466 accept_chi 1 ALIGNMENT 967 Y12-11d01.p1k chr09 14 1177 211627 212818 F 1164 95.88 1237 accept 0 ALIGNMENT 993 Y12-11d01.q1k chr09 1202 28 215963 217135 C 1175 95.49 1325 accept 0 ALIGNMENT 1049 Y12-11d03.p1k chr16 27 1317 876650 877944 F 1291 95.27 1318 accept 0 ALIGNMENT 950 Y12-11d03.q1k chr16 1185 36 881305 882457 C 1150 95.57 1311 accept 0 ALIGNMENT 963 Y12-11d04.q1k chr07 1116 35 558570 559667 C 1082 97.13 1277 accept 0 ALIGNMENT 962 Y12-11d04.p1k chr07 18 1157 555452 556610 F 1140 96.05 1276 accept 0 ALIGNMENT 138 Y12-11d04.p1k chr12 871 1147 819775 820064 F 277 84.84 1276 reject_low 1 ALIGNMENT 0 Y12-11d04.p1k chr12 62 870 819775 819774 F 809 0.00 1276 reject_low 1 ALIGNMENT 0 Y12-11d05.p1k chr12 261 930 490543 490542 F 670 0.00 1280 reject_low 2 ALIGNMENT 1083 Y12-11d05.p1k chr12 20 1219 452334 453545 F 1200 97.08 1280 accept 0 ALIGNMENT 230 Y12-11d05.p1k chr12 20 260 490302 490543 F 241 98.76 1280 reject_low 2 ALIGNMENT 1083 Y12-11d05.p1k chr12 20 1219 461471 462682 F 1200 97.08 1280 accept 1 ALIGNMENT 1080 Y12-11d06.p1k chr15 1274 18 829116 830381 C 1257 96.10 1288 accept 0 ALIGNMENT 982 Y12-11d06.q1k chr15 37 1245 825343 826558 F 1209 94.29 1357 accept 0 ALIGNMENT 0 Y12-11d07.p1k chr04 489 888 437516 437515 F 400 0.00 1274 reject_low 22 ALIGNMENT 357 Y12-11d07.p1k chr13 115 487 503768 504140 F 373 100.00 1274 reject_low 10 ALIGNMENT 115 Y12-11d07.q1k chr12 845 964 485696 485814 F 120 99.17 1343 reject_low 7 ALIGNMENT 0 Y12-11d07.p1k chr16 116 62 443110 443109 C 55 0.00 1274 reject_low 17 ALIGNMENT 0 Y12-11d07.p1k chr16 116 62 437258 437257 C 55 0.00 1274 reject_low 16 ALIGNMENT 0 Y12-11d07.p1k chr14 488 888 561978 561977 F 401 0.00 1274 reject_low 14 ALIGNMENT 115 Y12-11d07.q1k chr12 845 964 482044 482162 F 120 99.17 1343 reject_low 6 ALIGNMENT 357 Y12-11d07.p1k chr02 487 115 35848 36220 C 373 100.00 1274 reject_low 9 ALIGNMENT 0 Y12-11d07.p1k chr13 116 62 808906 808905 C 55 0.00 1274 reject_low 8 ALIGNMENT 0 Y12-11d07.q1k chr06 829 586 31623 31622 C 244 0.00 1343 reject_low 3 ALIGNMENT 0 Y12-11d07.p1k chr02 888 488 643484 643483 C 401 0.00 1274 reject_low 19 ALIGNMENT 355 Y12-11d07.p1k chr10 117 487 203319 203689 F 371 100.00 1274 reject_low 13 ALIGNMENT 0 Y12-11d07.p1k chr14 116 62 632492 632491 C 55 0.00 1274 reject_low 20 ALIGNMENT 0 Y12-11d07.p1k chr10 62 116 197464 197463 F 55 0.00 1274 reject_low 12 ALIGNMENT 0 Y12-11d07.p1k chr08 62 113 85532 85531 F 52 0.00 1274 reject_low 11 ALIGNMENT 0 Y12-11d07.p1k chr06 487 888 144518 144517 F 402 0.00 1274 reject_low 25 ALIGNMENT 94 Y12-11d07.q1k chr06 585 478 31622 31729 C 108 98.15 1343 reject_low 3 ALIGNMENT 0 Y12-11d07.q1k chr12 62 844 472464 472463 F 783 0.00 1343 reject_low 5 ALIGNMENT 46 Y12-11d07.p1k chr06 293 486 144325 144518 F 194 77.84 1274 reject_low 25 ALIGNMENT 0 Y12-11d07.q1k chr12 62 844 489348 489347 F 783 0.00 1343 reject_low 4 ALIGNMENT 0 Y12-11d07.p1k chr07 888 489 931174 931173 C 400 0.00 1274 reject_low 23 ALIGNMENT 340 Y12-11d07.p1k chr07 117 487 110859 111229 F 371 98.65 1274 reject_low 18 ALIGNMENT 337 Y12-11d07.p1k chr02 487 117 643483 643853 C 371 98.38 1274 reject_low 19 ALIGNMENT 0 Y12-11d07.p1k chr14 62 116 96451 96450 F 55 0.00 1274 reject_low 24 ALIGNMENT 0 Y12-11d07.p1k chr05 888 488 354357 354356 C 401 0.00 1274 reject_low 21 ALIGNMENT 1048 Y12-11d07.p1k chr09 1261 18 195876 197119 C 1244 96.38 1274 accept_chi 0 ALIGNMENT 0 Y12-11d07.p1k chr07 62 116 110859 110858 F 55 0.00 1274 reject_low 18 ALIGNMENT 145 Y12-11d07.p1k chr14 117 275 96451 96609 F 159 98.11 1274 reject_low 24 ALIGNMENT 0 Y12-11d07.p1k chr02 114 62 36221 36220 C 53 0.00 1274 reject_low 9 ALIGNMENT 309 Y12-11d07.p1k chr07 488 117 931173 931543 C 372 95.97 1274 reject_low 23 ALIGNMENT 0 Y12-11d07.p1k chr02 888 488 35849 35848 C 401 0.00 1274 reject_low 9 ALIGNMENT 0 Y12-11d07.p1k chr08 488 888 91757 91756 F 401 0.00 1274 reject_low 15 ALIGNMENT 0 Y12-11d07.p1k chr07 488 888 111229 111228 F 401 0.00 1274 reject_low 18 ALIGNMENT 0 Y12-11d07.p1k chr04 62 116 437146 437145 F 55 0.00 1274 reject_low 22 ALIGNMENT 0 Y12-11d07.p1k chr15 62 115 703772 703771 F 54 0.00 1274 reject_low 26 ALIGNMENT 0 Y12-11d07.p1k chr02 116 62 643854 643853 C 55 0.00 1274 reject_low 19 ALIGNMENT 913 Y12-11d07.q1k chr12 31 1185 458861 460016 F 1155 94.98 1343 accept_chi 1 ALIGNMENT 0 Y12-11d07.p1k chr07 116 62 931544 931543 C 55 0.00 1274 reject_low 23 ALIGNMENT 334 Y12-11d07.p1k chr14 487 117 632121 632491 C 371 98.11 1274 reject_low 20 ALIGNMENT 266 Y12-11d07.p1k chr15 116 407 703772 704063 F 292 98.29 1274|0,2 reject_low 26 ALIGNMENT 118 Y12-11d07.q1k chr12 845 970 489348 489472 F 126 98.41 1343 reject_low 4 ALIGNMENT 0 Y12-11d07.p1k chr10 488 888 203689 203688 F 401 0.00 1274 reject_low 13 ALIGNMENT 0 Y12-11d07.q1k chr12 62 844 482044 482043 F 783 0.00 1343 reject_low 6 ALIGNMENT 348 Y12-11d07.p1k chr08 114 487 85532 85905 F 374 99.20 1274 reject_low 11 ALIGNMENT 115 Y12-11d07.q1k chr12 845 964 472464 472582 F 120 99.17 1343 reject_low 5 ALIGNMENT 329 Y12-11d07.p1k chr13 495 117 808527 808905 C 379 97.36 1274 reject_low 8 ALIGNMENT 0 Y12-11d07.p1k chr08 488 888 85905 85904 F 401 0.00 1274 reject_low 11 ALIGNMENT 0 Y12-11d07.p1k chr14 888 488 632122 632121 C 401 0.00 1274 reject_low 20 ALIGNMENT 882 Y12-11d07.q1k chr12 31 964 467998 468930 F 934 99.36 1343 reject_low 2 ALIGNMENT 0 Y12-11d07.p1k chr05 115 62 354728 354727 C 54 0.00 1274 reject_low 21 ALIGNMENT 345 Y12-11d07.p1k chr14 114 487 561605 561978 F 374 98.93 1274 reject_low 14 ALIGNMENT 0 Y12-11d07.p1k chr08 62 116 91387 91386 F 55 0.00 1274 reject_low 15 ALIGNMENT 0 Y12-11d07.p1k chr16 888 488 442740 442739 C 401 0.00 1274 reject_low 17 ALIGNMENT 0 Y12-11d07.p1k chr14 62 113 561605 561604 F 52 0.00 1274 reject_low 14 ALIGNMENT 0 Y12-11d07.q1k chr12 62 844 485696 485695 F 783 0.00 1343 reject_low 7 ALIGNMENT 0 Y12-11d07.q1k chr06 477 62 31730 31729 C 416 0.00 1343 reject_low 3 ALIGNMENT 332 Y12-11d07.p1k chr05 487 116 354356 354727 C 372 97.85 1274 reject_low 21 ALIGNMENT 312 Y12-11d07.p1k chr04 117 488 437146 437516 F 372 96.24 1274 reject_low 22 ALIGNMENT 0 Y12-11d07.p1k chr16 888 488 436888 436887 C 401 0.00 1274 reject_low 16 ALIGNMENT 57 Y12-11d07.p1k chr15 403 487 710025 710108 F 85 94.12 1274|3,0 reject_low 26 ALIGNMENT 0 Y12-11d07.p1k chr06 62 292 144325 144324 F 231 0.00 1274 reject_low 25 ALIGNMENT 343 Y12-11d07.p1k chr16 487 117 436887 437257 C 371 98.92 1274 reject_low 16 ALIGNMENT 0 Y12-11d07.p1k chr14 276 888 96609 96608 F 613 0.00 1274 reject_low 24 ALIGNMENT 0 Y12-11d07.p1k chr10 62 116 203319 203318 F 55 0.00 1274 reject_low 13 ALIGNMENT 0 Y12-11d07.p1k chr13 488 888 504140 504139 F 401 0.00 1274 reject_low 10 ALIGNMENT 0 Y12-11d07.p1k chr15 406 405 704062 710027 F 0 0.00 1274 reject_low 26 ALIGNMENT 0 Y12-11d07.p1k chr13 888 496 808528 808527 C 393 0.00 1274 reject_low 8 ALIGNMENT 343 Y12-11d07.p1k chr08 117 487 91387 91757 F 371 98.92 1274 reject_low 15 ALIGNMENT 0 Y12-11d07.p1k chr15 488 888 710108 710107 F 401 0.00 1274 reject_low 26 ALIGNMENT 355 Y12-11d07.p1k chr10 117 487 197464 197834 F 371 100.00 1274 reject_low 12 ALIGNMENT 0 Y12-11d07.p1k chr13 62 114 503768 503767 F 53 0.00 1274 reject_low 10 ALIGNMENT 343 Y12-11d07.p1k chr16 487 117 442739 443109 C 371 98.92 1274 reject_low 17 ALIGNMENT 0 Y12-11d07.p1k chr10 488 888 197834 197833 F 401 0.00 1274 reject_low 12 ALIGNMENT 1026 Y12-11d08.q1k chr13 1209 29 721430 722618 C 1181 96.27 1317 accept 0 ALIGNMENT 1009 Y12-11d08.p1k chr13 14 1211 717831 719024 F 1198 96.49 1266 accept 0 ALIGNMENT 951 Y12-11d09.p1k chr02 13 1159 282847 283986 F 1147 95.99 1258 accept 0 ALIGNMENT 940 Y12-11d09.q1k chr02 1094 35 286257 287319 C 1060 97.17 1326 accept 0 ALIGNMENT 970 Y12-11d10.q1k chr09 1132 35 318404 319504 C 1098 97.45 1325 accept_chi 1 ALIGNMENT 1050 Y12-11d10.p1k chr12 1229 13 378139 379354 C 1217 96.38 1246 accept_chi 0 ALIGNMENT 1009 Y12-11d11.q1k chr13 33 1187 571168 572340 F 1155 97.14 1312 accept 0 ALIGNMENT 1074 Y12-11d11.p1k chr13 1289 23 573402 574678 C 1267 96.53 1362 accept 0 ALIGNMENT 0 Y12-11d12.p1k chr09 862 710 169458 169457 C 153 0.00 1291 reject_low 4 ALIGNMENT 0 Y12-11d12.p1k chr04 862 705 923043 923042 C 158 0.00 1291 reject_low 5 ALIGNMENT 23 Y12-11d12.p1k chr04 704 675 923042 923071 C 30 100.00 1291 reject_low 5 ALIGNMENT 0 Y12-11d12.p1k chr04 62 674 747495 747494 F 613 0.00 1291 reject_low 2 ALIGNMENT 0 Y12-11d12.p1k chr09 674 62 169492 169491 C 613 0.00 1291 reject_low 4 ALIGNMENT 0 Y12-11d12.q1k chr13 62 483 817125 817124 F 422 0.00 1293 reject_low 1 ALIGNMENT 931 Y12-11d12.q1k chr13 1109 33 47696 48789 C 1077 96.75 1293 accept 0 ALIGNMENT 0 Y12-11d12.p1k chr05 674 62 83197 83196 C 613 0.00 1291 reject_low 3 ALIGNMENT 0 Y12-11d12.p1k chr04 674 62 923072 923071 C 613 0.00 1291 reject_low 5 ALIGNMENT 26 Y12-11d12.p1k chr05 720 675 83151 83196 C 46 91.30 1291 reject_low 3 ALIGNMENT 0 Y12-11d12.p1k chr04 726 862 747545 747544 F 137 0.00 1291 reject_low 2 ALIGNMENT 20 Y12-11d12.p1k chr07 710 675 53130 53165 C 36 94.44 1291 reject_low 6 ALIGNMENT 0 Y12-11d12.p1k chr05 862 721 83152 83151 C 142 0.00 1291 reject_low 3 ALIGNMENT 27 Y12-11d12.p1k chr04 675 725 747495 747545 F 51 90.20 1291 reject_low 2 ALIGNMENT 0 Y12-11d12.p1k chr07 862 711 53131 53130 C 152 0.00 1291 reject_low 6 ALIGNMENT 0 Y12-11d12.p1k chr07 674 62 53166 53165 C 613 0.00 1291 reject_low 6 ALIGNMENT 23 Y12-11d12.p1k chr09 709 675 169457 169491 C 35 97.14 1291 reject_low 4 ALIGNMENT 70 Y12-11d12.q1k chr13 484 812 817125 817452 F 329 75.68 1293 reject_low 1 ALIGNMENT 956 Y12-11d12.p1k chr13 17 1069 43717 44777 F 1053 97.82 1291 accept 0 ALIGNMENT 20 Y12-11d14.p1k chrm 276 338 60302 60362 F 63 87.30 1341 reject_low 1 ALIGNMENT 1028 Y12-11d14.q1k chr15 28 1187 458398 459571 F 1160 97.07 1293 accept 0 ALIGNMENT 0 Y12-11d14.p1k chrm 62 275 60302 60301 F 214 0.00 1341 reject_low 1 ALIGNMENT 998 Y12-11d14.p1k chr15 1195 17 461367 462526 C 1179 96.10 1341 accept 0 ALIGNMENT 0 Y12-11d14.p1k chrm 339 809 60362 60361 F 471 0.00 1341 reject_low 1 ALIGNMENT 751 Y12-11d15.p1k chr14 25 988 262167 263120 F 964 94.40 1309 accept 0 ALIGNMENT 991 Y12-11d17.p1k chr12 1253 13 682493 683731 C 1241 95.25 1331 accept 0 ALIGNMENT 1003 Y12-11d17.q1k chr12 28 1213 680877 682075 F 1186 95.78 1288 accept 0 ALIGNMENT 32 Y12-11d19.q1k chr11 241 320 313455 313534 F 80 83.75 1291 reject_low 1 ALIGNMENT 917 Y12-11d19.q1k chr02 1282 32 349536 350788 C 1251 92.73 1291 accept 0 ALIGNMENT 0 Y12-11d19.q1k chr11 62 240 313455 313454 F 179 0.00 1291 reject_low 1 ALIGNMENT 0 Y12-11d19.q1k chr11 321 853 313534 313533 F 533 0.00 1291 reject_low 1 ALIGNMENT 1038 Y12-11d19.p1k chr02 25 1223 344693 345884 F 1199 97.00 1304 accept 0 ALIGNMENT 0 Y12-11d20.p1k chr09 288 880 10627 10626 F 593 0.00 1277 reject_low 2 ALIGNMENT 222 Y12-11d20.p1k chr03 287 19 303899 304167 C 269 94.80 1277 reject_low 1 ALIGNMENT 0 Y12-11d20.p1k chr10 288 880 10610 10609 F 593 0.00 1277 reject_low 3 ALIGNMENT 1052 Y12-11d20.p1k chr12 1262 20 1058303 1059560 C 1243 96.46 1277 accept 0 ALIGNMENT 157 Y12-11d20.p1k chr10 19 287 10343 10610 F 269 86.99 1277 reject_low 3 ALIGNMENT 0 Y12-11d20.p1k chr03 880 288 303900 303899 C 593 0.00 1277 reject_low 1 ALIGNMENT 1045 Y12-11d20.q1k chr12 34 1270 1054339 1055573 F 1237 96.36 1296 accept 0 ALIGNMENT 157 Y12-11d20.p1k chr09 19 287 10360 10627 F 269 86.99 1277 reject_low 2 ALIGNMENT 919 Y12-11d21.p1k chr04 1233 175 94356 95423 C 1059 96.03 1248 accept 0 ALIGNMENT 1005 Y12-11d21.q1k chr04 25 1248 89274 90493 F 1224 95.34 1264 accept 0 ALIGNMENT 1032 Y12-11d22.q1k chr14 1262 32 384538 385769 C 1231 95.86 1264 accept 0 ALIGNMENT 952 Y12-11d22.p1k chr14 24 1249 381219 382448 F 1226 94.37 1249 accept 0 ALIGNMENT 653 Y12-11d24.p1k chr04 1081 206 273191 274050 C 876 92.12 1237 accept 0 ALIGNMENT 937 Y12-11d24.q1k chr04 34 1198 269032 270200 F 1165 95.28 1223 accept 0 ALIGNMENT 856 Y12-11e01.q1k chr05 33 1116 305604 306704 F 1084 95.11 1301 accept 0 ALIGNMENT 0 Y12-11e01.p1k chr11 891 193 196358 196357 C 699 0.00 1239 reject_low 7 ALIGNMENT 0 Y12-11e01.p1k chr08 160 62 365463 365462 C 99 0.00 1239 reject_low 4 ALIGNMENT 0 Y12-11e01.p1k chr16 163 62 187380 187379 C 102 0.00 1239 reject_low 3 ALIGNMENT 21 Y12-11e01.p1k chr07 170 192 394460 394482 F 23 100.00 1239 reject_low 10 ALIGNMENT 0 Y12-11e01.p1k chr09 62 92 105351 105350 F 31 0.00 1239 reject_low 1 ALIGNMENT 0 Y12-11e01.p1k chr11 160 62 561433 561432 C 99 0.00 1239 reject_low 6 ALIGNMENT 24 Y12-11e01.p1k chr16 197 164 187346 187379 C 34 94.12 1239 reject_low 3 ALIGNMENT 20 Y12-11e01.p1k chr11 192 160 196357 196389 C 33 90.91 1239 reject_low 7 ALIGNMENT 0 Y12-11e01.p1k chr11 159 62 196390 196389 C 98 0.00 1239 reject_low 7 ALIGNMENT 0 Y12-11e01.p1k chr13 196 891 209904 209903 F 696 0.00 1239 reject_low 2 ALIGNMENT 23 Y12-11e01.p1k chr08 197 161 365426 365462 C 37 91.89 1239 reject_low 4 ALIGNMENT 21 Y12-11e01.p1k chr10 167 189 138893 138915 F 23 100.00 1239 reject_low 9 ALIGNMENT 0 Y12-11e01.p1k chr13 197 891 354229 354228 F 695 0.00 1239 reject_low 5 ALIGNMENT 20 Y12-11e01.p1k chr03 197 173 271472 271496 C 25 100.00 1239 reject_low 8 ALIGNMENT 0 Y12-11e01.p1k chr10 62 166 138893 138892 F 105 0.00 1239 reject_low 9 ALIGNMENT 27 Y12-11e01.p1k chr13 162 195 209871 209904 F 34 97.06 1239 reject_low 2 ALIGNMENT 22 Y12-11e01.p1k chr11 184 161 561409 561432 C 24 100.00 1239 reject_low 6 ALIGNMENT 0 Y12-11e01.p1k chr10 190 891 138915 138914 F 702 0.00 1239 reject_low 9 ALIGNMENT 21 Y12-11e01.p1k chr13 159 196 354192 354229 F 38 89.47 1239 reject_low 5 ALIGNMENT 0 Y12-11e01.p1k chr08 891 198 365427 365426 C 694 0.00 1239 reject_low 4 ALIGNMENT 0 Y12-11e01.p1k chr07 62 169 394460 394459 F 108 0.00 1239 reject_low 10 ALIGNMENT 0 Y12-11e01.p1k chr11 891 185 561410 561409 C 707 0.00 1239 reject_low 6 ALIGNMENT 0 Y12-11e01.p1k chr13 62 158 354192 354191 F 97 0.00 1239 reject_low 5 ALIGNMENT 0 Y12-11e01.p1k chr03 891 198 271473 271472 C 694 0.00 1239 reject_low 8 ALIGNMENT 0 Y12-11e01.p1k chr09 134 891 105391 105390 F 758 0.00 1239 reject_low 1 ALIGNMENT 20 Y12-11e01.p1k chr09 93 133 105351 105391 F 41 90.24 1239 reject_low 1 ALIGNMENT 0 Y12-11e01.p1k chr03 172 62 271497 271496 C 111 0.00 1239 reject_low 8 ALIGNMENT 0 Y12-11e01.p1k chr16 891 198 187347 187346 C 694 0.00 1239 reject_low 3 ALIGNMENT 0 Y12-11e01.p1k chr13 62 161 209871 209870 F 100 0.00 1239 reject_low 2 ALIGNMENT 928 Y12-11e01.p1k chr05 1237 23 307963 309165 C 1215 94.73 1239 accept 0 ALIGNMENT 0 Y12-11e01.p1k chr07 193 891 394482 394481 F 699 0.00 1239 reject_low 10 ALIGNMENT 996 Y12-11e02.p1k chr15 1141 15 512916 514031 C 1127 97.60 1226 accept 0 ALIGNMENT 913 Y12-11e02.q1k chr15 43 1068 507857 508897 F 1026 96.78 1266 accept 0 ALIGNMENT 973 Y12-11e04.q1k chr04 29 1191 960074 961254 F 1163 95.44 1309 accept 0 ALIGNMENT 1025 Y12-11e04.p1k chr04 1222 16 963270 964492 C 1207 95.53 1267 accept 0 ALIGNMENT 963 Y12-11e05.p1k chr02 1126 32 554000 555088 C 1095 97.17 1325 accept 0 ALIGNMENT 899 Y12-11e05.q1k chr02 39 1093 550000 551068 F 1055 96.49 1247 accept 0 ALIGNMENT 0 Y12-11e07.q1k chr16 62 718 622527 622526 F 657 0.00 1359 reject_low 3 ALIGNMENT 84 Y12-11e07.q1k chr08 719 822 358472 358575 F 104 93.27 1359 reject_low 6 ALIGNMENT 0 Y12-11e07.q1k chr16 62 726 560193 560192 F 665 0.00 1359 reject_low 8 ALIGNMENT 84 Y12-11e07.q1k chr07 728 826 440720 440819 F 99 93.94 1359 reject_low 4 ALIGNMENT 0 Y12-11e07.p1k chr13 62 302 348390 348389 F 241 0.00 1237 reject_low 1 ALIGNMENT 89 Y12-11e07.q1k chr06 719 826 157900 158008 F 108 93.52 1359 reject_low 2 ALIGNMENT 1009 Y12-11e07.q1k chr13 1258 36 351838 353063 C 1223 94.44 1359 accept 0 ALIGNMENT 0 Y12-11e07.q1k chr06 62 718 157900 157899 F 657 0.00 1359 reject_low 2 ALIGNMENT 0 Y12-11e07.q1k chr08 62 718 358472 358471 F 657 0.00 1359 reject_low 6 ALIGNMENT 871 Y12-11e07.p1k chr13 19 979 348106 349064 F 961 98.86 1237 accept 0 ALIGNMENT 0 Y12-11e07.q1k chr04 62 716 1095353 1095352 F 655 0.00 1359 reject_low 9 ALIGNMENT 86 Y12-11e07.q1k chr16 719 823 622527 622632 F 105 93.33 1359 reject_low 3 ALIGNMENT 70 Y12-11e07.q1k chr04 717 820 1095353 1095457 F 104 88.46 1359 reject_low 9 ALIGNMENT 0 Y12-11e07.q1k chr02 719 62 36495 36494 C 658 0.00 1359 reject_low 5 ALIGNMENT 0 Y12-11e07.q1k chr14 728 62 374962 374961 C 667 0.00 1359 reject_low 10 ALIGNMENT 677 Y12-11e07.p1k chr13 303 1181 348390 349254 F 879 94.88 1237 reject_low 1 ALIGNMENT 78 Y12-11e07.q1k chr14 823 729 374867 374961 C 95 92.63 1359 reject_low 10 ALIGNMENT 84 Y12-11e07.q1k chr08 727 822 237848 237944 F 96 94.79 1359 reject_low 7 ALIGNMENT 86 Y12-11e07.q1k chr02 822 720 36392 36494 C 103 93.20 1359 reject_low 5 ALIGNMENT 82 Y12-11e07.q1k chr16 727 820 560193 560287 F 94 94.68 1359 reject_low 8 ALIGNMENT 0 Y12-11e07.q1k chr07 62 727 440720 440719 F 666 0.00 1359 reject_low 4 ALIGNMENT 0 Y12-11e07.q1k chr08 62 726 237848 237847 F 665 0.00 1359 reject_low 7 ALIGNMENT 75 Y12-11e08.p1k chr11 793 868 313042 313117 F 76 100.00 1212 reject_low 4 ALIGNMENT 810 Y12-11e08.p1k chr07 886 15 319766 320637 C 872 98.74 1212|2,0 accept 0 ALIGNMENT 73 Y12-11e08.p1k chr05 868 792 207356 207432 C 77 98.70 1212 reject_low 6 ALIGNMENT 0 Y12-11e08.p1k chr07 62 789 110622 110621 F 728 0.00 1212 reject_low 1 ALIGNMENT 75 Y12-11e08.p1k chr08 868 790 62753 62831 C 79 98.73 1212 reject_low 2 ALIGNMENT 0 Y12-11e08.p1k chr07 884 885 319423 319767 C 0 0.00 1212 accept 0 ALIGNMENT 75 Y12-11e08.p1k chr07 790 868 110622 110700 F 79 98.73 1212 reject_low 1 ALIGNMENT 0 Y12-11e08.p1k chr13 792 62 363139 363138 C 731 0.00 1212 reject_low 5 ALIGNMENT 0 Y12-11e08.p1k chr05 62 792 434533 434532 F 731 0.00 1212 reject_low 3 ALIGNMENT 0 Y12-11e08.p1k chr08 789 62 62832 62831 C 728 0.00 1212 reject_low 2 ALIGNMENT 0 Y12-11e08.p1k chr11 62 792 313042 313041 F 731 0.00 1212 reject_low 4 ALIGNMENT 188 Y12-11e08.p1k chr07 1205 882 319101 319425 C 324 87.04 1212|0,3 accept 0 ALIGNMENT 75 Y12-11e08.p1k chr13 868 793 363063 363138 C 76 100.00 1212 reject_low 5 ALIGNMENT 0 Y12-11e08.p1k chr05 791 62 207433 207432 C 730 0.00 1212 reject_low 6 ALIGNMENT 75 Y12-11e08.p1k chr05 793 868 434533 434608 F 76 100.00 1212 reject_low 3 ALIGNMENT 885 Y12-11e08.q1k chr07 37 1121 314335 315444 F 1085 95.12 1296 accept 0 ALIGNMENT 1002 Y12-11e09.q1k chr13 1252 39 16268 17496 C 1214 94.65 1332 accept 0 ALIGNMENT 1071 Y12-11e09.p1k chr13 26 1319 11995 13305 F 1294 95.36 1325 accept 0 ALIGNMENT 1012 Y12-11e10.p1k chr04 1207 16 913937 915140 C 1192 96.06 1293 accept 0 ALIGNMENT 961 Y12-11e10.q1k chr04 37 1146 909079 910195 F 1110 96.58 1307 accept 0 ALIGNMENT 0 Y12-11e10.p1k chr02 62 459 236507 236506 F 398 0.00 1293 reject_low 1 ALIGNMENT 245 Y12-11e10.p1k chr02 460 843 236507 236890 F 384 88.28 1293 reject_low 1 ALIGNMENT 1008 Y12-11e11.p1k chr02 22 1185 488176 489351 F 1164 96.48 1327 accept 0 ALIGNMENT 1042 Y12-11e11.q1k chr02 1211 33 491079 492261 C 1179 96.69 1351 accept 0 ALIGNMENT 1020 Y12-11e12.p1k chr04 16 1177 1141234 1142408 F 1162 97.16 1291 accept 0 ALIGNMENT 1001 Y12-11e12.q1k chr04 1259 34 1144601 1145834 C 1226 95.02 1359 accept 0 ALIGNMENT 798 Y12-11e14.q1k chr07 35 1024 911472 912471 F 990 94.75 1216 accept_chi 0 ALIGNMENT 216 Y12-11e14.p1k chr04 103 458 666520 666876 F 356 87.36 1399 accept_chi 1 ALIGNMENT 945 Y12-11e15.q1k chr07 29 1205 280574 281758 F 1177 94.82 1282 accept 0 ALIGNMENT 987 Y12-11e15.p1k chr07 1237 17 284526 285729 C 1221 95.50 1308 accept 0 ALIGNMENT 105 Y12-11e16.q1k chr16 1023 499 182198 182719 C 525 74.48 1351 accept 0 ALIGNMENT 119 Y12-11e16.p1k chr16 582 973 179039 179430 F 392 77.55 1321 accept 0 ALIGNMENT 1043 Y12-11e17.p1k chr15 21 1209 233672 234879 F 1189 96.72 1373 accept 0 ALIGNMENT 937 Y12-11e17.q1k chr15 1282 33 237832 239077 C 1250 93.60 1321 accept 0 ALIGNMENT 1037 Y12-11e18.p1k chr12 1146 16 272558 273693 C 1131 97.88 1344 accept 0 ALIGNMENT 1025 Y12-11e18.q1k chr12 31 1259 268493 269736 F 1229 96.18 1287 accept 0 ALIGNMENT 1032 Y12-11e19.p1k chr02 1254 30 411918 413157 C 1225 95.51 1260 accept_chi 1 ALIGNMENT 881 Y12-11e19.q1k chr04 1148 37 211804 212922 C 1112 95.14 1255 accept_chi 0 ALIGNMENT 230 Y12-11e19.p1k chr07 955 167 907050 907839 C 789 76.55 1260 reject_low 2 ALIGNMENT 0 Y12-11e19.p1k chr07 166 62 907840 907839 C 105 0.00 1260 reject_low 2 ALIGNMENT 997 Y12-11e20.q1k chr13 39 1223 74406 75576 F 1185 96.62 1330 accept 0 ALIGNMENT 1048 Y12-11e20.p1k chr13 1233 14 79083 80319 C 1220 96.23 1368 accept 0 ALIGNMENT 881 Y12-11e21.p1k chr11 1199 163 369934 370985 C 1037 95.95 1273 accept 0 ALIGNMENT 933 Y12-11e21.q1k chr11 34 1128 366083 367186 F 1095 95.89 1233 accept 0 ALIGNMENT 1067 Y12-11e22.q1k chr14 1241 38 408246 409448 C 1204 96.51 1256 accept 0 ALIGNMENT 861 Y12-11e22.p1k chr14 177 1209 405215 406229 F 1033 96.42 1307 accept 0 ALIGNMENT 0 Y12-11e23.p1k chr09 458 884 325825 325824 F 427 0.00 1241 reject_low 7 ALIGNMENT 0 Y12-11e23.p1k chr14 884 257 519165 519164 C 628 0.00 1241 reject_low 20 ALIGNMENT 0 Y12-11e23.p1k chr04 184 167 1095834 1095833 C 18 0.00 1241 reject_low 16 ALIGNMENT 0 Y12-11e23.p1k chr15 257 884 980586 980585 F 628 0.00 1241 reject_low 12 ALIGNMENT 74 Y12-11e23.p1k chr14 451 378 560693 560766 C 74 100.00 1241 reject_low 9 ALIGNMENT 55 Y12-11e23.p1k chr08 248 181 133680 133747 C 68 95.59 1241 reject_low 13 ALIGNMENT 0 Y12-11e23.p1k chr02 884 257 226625 226624 C 628 0.00 1241 reject_low 14 ALIGNMENT 57 Y12-11e23.p1k chr16 256 185 844408 844479 C 72 95.83 1241 reject_low 18 ALIGNMENT 74 Y12-11e23.p1k chr14 378 451 104805 104878 F 74 100.00 1241 reject_low 8 ALIGNMENT 0 Y12-11e23.p1k chr04 167 184 513515 513514 F 18 0.00 1241 reject_low 15 ALIGNMENT 25 Y12-11e23.p1k chr02 257 226 266150 266181 C 32 93.75 1241 reject_low 23 ALIGNMENT 0 Y12-11e23.p1k chr01 884 257 183137 183136 C 628 0.00 1241 reject_low 19 ALIGNMENT 0 Y12-11e23.p1k chr08 260 884 116750 116749 F 625 0.00 1241 reject_low 11 ALIGNMENT 57 Y12-11e23.p1k chr04 185 256 513515 513586 F 72 95.83 1241 reject_low 15 ALIGNMENT 0 Y12-11e23.p1k chr15 884 457 354035 354034 C 428 0.00 1241 reject_low 1 ALIGNMENT 82 Y12-11e23.p1k chr15 456 375 354034 354115 C 82 100.00 1241 reject_low 1 ALIGNMENT 60 Y12-11e23.p1k chr04 259 185 802897 802971 C 75 96.00 1241 reject_low 10 ALIGNMENT 0 Y12-11e23.p1k chr14 181 167 524805 524804 C 15 0.00 1241 reject_low 21 ALIGNMENT 0 Y12-11e23.p1k chr14 884 452 560694 560693 C 433 0.00 1241 reject_low 9 ALIGNMENT 0 Y12-11e23.p1k chr04 184 167 802972 802971 C 18 0.00 1241 reject_low 10 ALIGNMENT 79 Y12-11e23.p1k chr08 456 378 116096 116174 C 79 100.00 1241 reject_low 4 ALIGNMENT 0 Y12-11e23.p1k chr14 452 884 104878 104877 F 433 0.00 1241 reject_low 8 ALIGNMENT 0 Y12-11e23.p1k chr10 884 460 59092 59091 C 425 0.00 1241 reject_low 2 ALIGNMENT 29 Y12-11e23.p1k chr10 182 256 355017 355091 F 75 81.33 1241 reject_low 22 ALIGNMENT 57 Y12-11e23.p1k chr02 256 185 226624 226695 C 72 95.83 1241 reject_low 14 ALIGNMENT 0 Y12-11e23.p1k chr10 257 884 355091 355090 F 628 0.00 1241 reject_low 22 ALIGNMENT 851 Y12-11e23.p1k chr02 181 1228 266181 267214 F 1048 95.32 1241 accept 0 ALIGNMENT 57 Y12-11e23.p1k chr04 256 185 1095762 1095833 C 72 95.83 1241 reject_low 16 ALIGNMENT 0 Y12-11e23.p1k chr15 167 184 980515 980514 F 18 0.00 1241 reject_low 12 ALIGNMENT 0 Y12-11e23.p1k chr04 884 257 1095763 1095762 C 628 0.00 1241 reject_low 16 ALIGNMENT 0 Y12-11e23.p1k chr03 167 377 295480 295479 F 211 0.00 1241 reject_low 3 ALIGNMENT 0 Y12-11e23.p1k chr15 257 377 113626 113800 F 121 0.00 1241 reject_low 24 ALIGNMENT 0 Y12-11e23.p1k chr14 167 377 104805 104804 F 211 0.00 1241 reject_low 8 ALIGNMENT 0 Y12-11e23.p1k chr03 457 884 295558 295557 F 428 0.00 1241 reject_low 3 ALIGNMENT 0 Y12-11e23.p1k chr08 884 457 116097 116096 C 428 0.00 1241 reject_low 4 ALIGNMENT 0 Y12-11e23.p1k chr04 884 260 802898 802897 C 625 0.00 1241 reject_low 10 ALIGNMENT 0 Y12-11e23.p1k chr16 184 167 844480 844479 C 18 0.00 1241 reject_low 18 ALIGNMENT 0 Y12-11e23.p1k chr05 167 184 492757 492756 F 18 0.00 1241 reject_low 17 ALIGNMENT 990 Y12-11e23.q1k chr02 1175 33 269661 270797 C 1143 96.50 1203 accept 0 ALIGNMENT 56 Y12-11e23.p1k chr01 256 186 183136 183206 C 71 95.77 1241 reject_low 19 ALIGNMENT 0 Y12-11e23.p1k chr02 884 258 266151 266150 C 627 0.00 1241 reject_low 23 ALIGNMENT 0 Y12-11e23.p1k chr09 167 377 175028 175027 F 211 0.00 1241 reject_low 6 ALIGNMENT 0 Y12-11e23.p1k chr05 257 884 492828 492827 F 628 0.00 1241 reject_low 17 ALIGNMENT 0 Y12-11e23.p1k chr14 884 257 524731 524730 C 628 0.00 1241 reject_low 21 ALIGNMENT 0 Y12-11e23.p1k chr15 458 884 113880 113879 F 427 0.00 1241 reject_low 24 ALIGNMENT 77 Y12-11e23.p1k chr09 378 457 325746 325825 F 80 98.75 1241 reject_low 7 ALIGNMENT 32 Y12-11e23.p1k chr14 256 182 519164 519238 C 75 82.67 1241 reject_low 20 ALIGNMENT 0 Y12-11e23.p1k chr09 167 377 325746 325745 F 211 0.00 1241 reject_low 7 ALIGNMENT 0 Y12-11e23.p1k chr09 458 884 175107 175106 F 427 0.00 1241 reject_low 6 ALIGNMENT 0 Y12-11e23.p1k chr04 257 884 513586 513585 F 628 0.00 1241 reject_low 15 ALIGNMENT 57 Y12-11e23.p1k chr15 181 256 113550 113625 F 76 93.42 1241 reject_low 24 ALIGNMENT 32 Y12-11e23.p1k chr14 256 182 524730 524804 C 75 82.67 1241 reject_low 21 ALIGNMENT 60 Y12-11e23.p1k chr08 185 259 116676 116750 F 75 96.00 1241 reject_low 11 ALIGNMENT 0 Y12-11e23.p1k chr15 374 167 354116 354115 C 208 0.00 1241 reject_low 1 ALIGNMENT 60 Y12-11e23.p1k chr15 185 256 980515 980586 F 72 97.22 1241 reject_low 12 ALIGNMENT 0 Y12-11e23.p1k chr14 181 167 519239 519238 C 15 0.00 1241 reject_low 20 ALIGNMENT 77 Y12-11e23.p1k chr04 457 378 434254 434333 C 80 98.75 1241 reject_low 5 ALIGNMENT 0 Y12-11e23.p1k chr02 184 167 226696 226695 C 18 0.00 1241 reject_low 14 ALIGNMENT 0 Y12-11e23.p1k chr08 377 167 116175 116174 C 211 0.00 1241 reject_low 4 ALIGNMENT 0 Y12-11e23.p1k chr04 884 458 434255 434254 C 427 0.00 1241 reject_low 5 ALIGNMENT 80 Y12-11e23.p1k chr15 378 457 113801 113880 F 80 100.00 1241 reject_low 24 ALIGNMENT 77 Y12-11e23.p1k chr09 378 457 175028 175107 F 80 98.75 1241 reject_low 6 ALIGNMENT 0 Y12-11e23.p1k chr10 167 181 355017 355016 F 15 0.00 1241 reject_low 22 ALIGNMENT 0 Y12-11e23.p1k chr14 377 167 560767 560766 C 211 0.00 1241 reject_low 9 ALIGNMENT 0 Y12-11e23.p1k chr16 884 257 844409 844408 C 628 0.00 1241 reject_low 18 ALIGNMENT 0 Y12-11e23.p1k chr10 377 167 59173 59172 C 211 0.00 1241 reject_low 2 ALIGNMENT 76 Y12-11e23.p1k chr10 459 378 59091 59172 C 82 97.56 1241 reject_low 2 ALIGNMENT 0 Y12-11e23.p1k chr01 185 167 183207 183206 C 19 0.00 1241 reject_low 19 ALIGNMENT 0 Y12-11e23.p1k chr08 884 249 133681 133680 C 636 0.00 1241 reject_low 13 ALIGNMENT 0 Y12-11e23.p1k chr08 167 184 116676 116675 F 18 0.00 1241 reject_low 11 ALIGNMENT 0 Y12-11e23.p1k chr04 377 167 434334 434333 C 211 0.00 1241 reject_low 5 ALIGNMENT 57 Y12-11e23.p1k chr05 185 256 492757 492828 F 72 95.83 1241 reject_low 17 ALIGNMENT 0 Y12-11e23.p1k chr02 225 167 266182 266181 C 59 0.00 1241 reject_low 23 ALIGNMENT 79 Y12-11e23.p1k chr03 378 456 295480 295558 F 79 100.00 1241 reject_low 3 ALIGNMENT 169 Y12-11e24.q1k chr14 440 25 9188 9604 C 416 81.49 1223 reject_low 3 ALIGNMENT 0 Y12-11e24.q1k chr13 91 62 8446 8445 C 30 0.00 1223 reject_low 5 ALIGNMENT 908 Y12-11e24.q1k chr11 1057 24 14817 15837 C 1034 97.49 1223 accept 0 ALIGNMENT 0 Y12-11e24.q1k chr04 171 62 2929 2928 C 110 0.00 1223 reject_low 1 ALIGNMENT 0 Y12-11e24.q1k chr10 441 743 743056 743055 F 303 0.00 1223 reject_low 7 ALIGNMENT 242 Y12-11e24.q1k chr04 955 172 2142 2928 C 784 78.44 1223 reject_low 1 ALIGNMENT 0 Y12-11e24.q1k chr10 62 171 742788 742787 F 110 0.00 1223 reject_low 7 ALIGNMENT 163 Y12-11e24.q1k chr07 25 440 1081461 1081877 F 416 81.01 1223 reject_low 4 ALIGNMENT 0 Y12-11e24.q1k chr14 743 441 9189 9188 C 303 0.00 1223 reject_low 3 ALIGNMENT 175 Y12-11e24.q1k chr02 173 441 810354 810622 F 269 89.22 1223 reject_low 6 ALIGNMENT 0 Y12-11e24.q1k chr06 743 442 7278 7277 C 302 0.00 1223 reject_low 8 ALIGNMENT 0 Y12-11e24.q1k chr02 442 743 810622 810621 F 302 0.00 1223 reject_low 6 ALIGNMENT 177 Y12-11e24.q1k chr13 441 92 8095 8445 C 350 84.29 1223 reject_low 5 ALIGNMENT 138 Y12-11e24.q1k chr09 182 440 437060 437318 F 259 86.10 1223 reject_low 9 ALIGNMENT 20 Y12-11e24.q1k chr09 589 620 437473 437504 F 32 87.50 1223 reject_low 9 ALIGNMENT 169 Y12-11e24.q1k chr06 441 181 7277 7537 C 261 89.27 1223 reject_low 8 ALIGNMENT 185 Y12-11e24.q1k chr08 922 172 6772 7526 C 751 76.83 1223 reject_low 2 ALIGNMENT 0 Y12-11e24.q1k chr09 621 743 437504 437503 F 123 0.00 1223 reject_low 9 ALIGNMENT 0 Y12-11e24.q1k chr08 171 62 7527 7526 C 110 0.00 1223 reject_low 2 ALIGNMENT 0 Y12-11e24.q1k chr09 441 588 437319 437472 F 148 0.00 1223 reject_low 9 ALIGNMENT 0 Y12-11e24.q1k chr09 62 181 437060 437059 F 120 0.00 1223 reject_low 9 ALIGNMENT 0 Y12-11e24.q1k chr13 743 442 8096 8095 C 302 0.00 1223 reject_low 5 ALIGNMENT 0 Y12-11e24.q1k chr07 441 743 1081877 1081876 F 303 0.00 1223 reject_low 4 ALIGNMENT 0 Y12-11e24.q1k chr06 180 62 7538 7537 C 119 0.00 1223 reject_low 8 ALIGNMENT 172 Y12-11e24.q1k chr10 172 440 742788 743056 F 269 88.85 1223 reject_low 7 ALIGNMENT 0 Y12-11e24.q1k chr02 62 172 810354 810353 F 111 0.00 1223 reject_low 6 ALIGNMENT 991 Y12-11f01.p1k chr08 13 1211 77335 78526 F 1199 96.00 1212 accept 0 ALIGNMENT 901 Y12-11f01.q1k chr08 1076 38 82139 83190 C 1039 96.25 1271 accept 0 ALIGNMENT 67 Y12-11f02.q1k chr11 736 664 202644 202716 C 73 97.26 1435 reject_low 5 ALIGNMENT 0 Y12-11f02.q1k chr03 379 663 151282 151281 F 285 0.00 1435 reject_low 4 ALIGNMENT 26 Y12-11f02.q1k chr16 1105 1034 844481 844552 C 72 81.94 1435 reject_low 28,29 ALIGNMENT 0 Y12-11f02.q1k chr03 379 907 142803 142802 F 529 0.00 1435 reject_low 19 ALIGNMENT 0 Y12-11f02.q1k chr10 663 379 414953 414952 C 285 0.00 1435 reject_low 2 ALIGNMENT 0 Y12-11f02.q1k chr13 869 379 190064 190063 C 491 0.00 1435 reject_low 15 ALIGNMENT 0 Y12-11f02.q1k chr03 1033 1009 169347 169383 C 25 0.00 1435 reject_low 26 ALIGNMENT 31 Y12-11f02.q1k chr03 908 1105 142803 143004 F 198 75.25 1435 reject_low 19 ALIGNMENT 0 Y12-11f02.q1k chr07 663 379 122345 122344 C 285 0.00 1435 reject_low 1 ALIGNMENT 63 Y12-11f02.q1k chr16 850 950 810225 810324 F 101 89.11 1435 reject_low 18 ALIGNMENT 81 Y12-11f02.q1k chr16 850 1008 850625 850780 F 159 85.53 1435 reject_low 23 ALIGNMENT 76 Y12-11f02.q1k chr10 1008 849 483731 483887 C 160 84.38 1435 reject_low 22 ALIGNMENT 0 Y12-11f02.q1k chr16 379 849 850625 850624 F 471 0.00 1435 reject_low 23 ALIGNMENT 0 Y12-11f02.q1k chr11 663 379 202717 202716 C 285 0.00 1435 reject_low 5 ALIGNMENT 26 Y12-11f02.q1k chr03 1105 1034 169275 169346 C 72 81.94 1435 reject_low 26 ALIGNMENT 70 Y12-11f02.q1k chr16 1008 870 844590 844725 C 139 85.61 1435 reject_low 28 ALIGNMENT 25 Y12-11f02.q1k chr16 1034 1096 850818 850880 F 63 82.54 1435 reject_low 23 ALIGNMENT 0 Y12-11f02.q1k chr16 379 844 804636 804635 F 466 0.00 1435 reject_low 16 ALIGNMENT 79 Y12-11f02.q1k chr02 1105 870 259649 259887 C 236 80.51 1435 reject_low 14 ALIGNMENT 0 Y12-11f02.q1k chr10 1033 1009 472522 472558 C 25 0.00 1435 reject_low 25 ALIGNMENT 0 Y12-11f02.q1k chr04 849 379 803231 803230 C 471 0.00 1435 reject_low 12 ALIGNMENT 0 Y12-11f02.q1k chr16 869 379 844726 844725 C 491 0.00 1435 reject_low 28 ALIGNMENT 0 Y12-11f02.q1k chr09 379 663 300228 300227 F 285 0.00 1435 reject_low 21 ALIGNMENT 0 Y12-11f02.q1k chr10 848 379 483888 483887 C 470 0.00 1435 reject_low 22 ALIGNMENT 0 Y12-11f02.q1k chr03 379 845 124127 124126 F 467 0.00 1435 reject_low 6 ALIGNMENT 0 Y12-11f02.q1k chr13 379 663 480621 480620 F 285 0.00 1435 reject_low 3 ALIGNMENT 0 Y12-11f02.q1k chr02 869 379 265473 265472 C 491 0.00 1435 reject_low 13 ALIGNMENT 68 Y12-11f02.q1k chr07 737 664 122271 122344 C 74 97.30 1435 reject_low 1 ALIGNMENT 82 Y12-11f02.q1k chr04 1105 850 802973 803230 C 256 80.08 1435 reject_low 12 ALIGNMENT 84 Y12-11f02.q1k chr07 1105 856 535288 535540 C 250 80.40 1435 reject_low 11 ALIGNMENT 88 Y12-11f02.q1k chr03 846 1105 124127 124389 F 260 80.38 1435 reject_low 6 ALIGNMENT 0 Y12-11f02.q1k chr09 738 851 300301 300408 F 114 0.00 1435 reject_low 21 ALIGNMENT 29 Y12-11f02.q1k chr07 1105 1034 541425 541496 C 72 83.33 1435 reject_low 24 ALIGNMENT 75 Y12-11f02.q1k chr07 1008 850 541534 541689 C 159 84.28 1435 reject_low 24 ALIGNMENT 51 Y12-11f02.q1k chr09 852 942 300409 300500 F 91 87.91 1435 reject_low 21 ALIGNMENT 71 Y12-11f02.q1k chr02 1096 862 221122 221361 C 235 80.00 1435 reject_low 17 ALIGNMENT 87 Y12-11f02.q1k chr13 850 1105 357004 357262 F 256 80.86 1435 reject_low 10 ALIGNMENT 0 Y12-11f02.q1k chr10 849 379 472715 472714 C 471 0.00 1435 reject_low 25 ALIGNMENT 0 Y12-11f02.q1k chr02 861 379 221362 221361 C 483 0.00 1435 reject_low 17 ALIGNMENT 82 Y12-11f02.q1k chr02 1105 870 265234 265472 C 236 80.93 1435 reject_low 13 ALIGNMENT 0 Y12-11f02.q1k chr14 379 849 96610 96609 F 471 0.00 1435 reject_low 7 ALIGNMENT 68 Y12-11f02.q1k chr10 737 664 414879 414952 C 74 97.30 1435 reject_low 2 ALIGNMENT 0 Y12-11f02.q1k chr16 869 379 850317 850316 C 491 0.00 1435 reject_low 29 ALIGNMENT 0 Y12-11f02.q1k chr16 1009 1033 850781 850817 F 25 0.00 1435 reject_low 23 ALIGNMENT 29 Y12-11f02.q1k chr10 1105 1034 483622 483693 C 72 83.33 1435 reject_low 22 ALIGNMENT 0 Y12-11f02.q1k chr07 855 379 535541 535540 C 477 0.00 1435 reject_low 11 ALIGNMENT 502 Y12-11f02.q1k chr07 1106 293 876029 876841 C 814 88.57 1435 accept 0 ALIGNMENT 70 Y12-11f02.q1k chr03 1008 870 169384 169519 C 139 85.61 1435 reject_low 26 ALIGNMENT 0 Y12-11f02.q1k chr16 1033 379 850144 850143 C 655 0.00 1435 reject_low 20 ALIGNMENT 90 Y12-11f02.q1k chr14 850 1105 96610 96868 F 256 81.25 1435 reject_low 7 ALIGNMENT 66 Y12-11f02.q1k chr09 664 737 300228 300300 F 74 97.30 1435 reject_low 21 ALIGNMENT 0 Y12-11f02.q1k chr16 1033 1009 844553 850180 C 25 0.00 1435 reject_low 29 ALIGNMENT 67 Y12-11f02.q1k chr03 664 736 151282 151354 F 73 97.26 1435 reject_low 4 ALIGNMENT 85 Y12-11f02.q1k chr12 850 1106 818073 818332 F 257 80.16 1435 reject_low 9 ALIGNMENT 0 Y12-11f02.q1k chr04 869 379 1101668 1101667 C 491 0.00 1435 reject_low 27 ALIGNMENT 70 Y12-11f02.q1k chr16 1008 870 850181 850316 C 139 85.61 1435 reject_low 29 ALIGNMENT 0 Y12-11f02.q1k chr16 1033 1009 844553 844589 C 25 0.00 1435 reject_low 28 ALIGNMENT 68 Y12-11f02.q1k chr13 664 737 480621 480694 F 74 97.30 1435 reject_low 3 ALIGNMENT 0 Y12-11f02.q1k chr02 869 379 259888 259887 C 491 0.00 1435 reject_low 14 ALIGNMENT 0 Y12-11f02.q1k chr04 1033 1009 1101495 1101531 C 25 0.00 1435 reject_low 27 ALIGNMENT 0 Y12-11f02.q1k chr02 848 379 226957 226956 C 470 0.00 1435 reject_low 8 ALIGNMENT 64 Y12-11f02.q1k chr16 845 950 804636 804740 F 106 88.68 1435 reject_low 16 ALIGNMENT 0 Y12-11f02.q1k chr07 849 379 541690 541689 C 471 0.00 1435 reject_low 24 ALIGNMENT 0 Y12-11f02.q1k chr07 1033 1009 541497 541533 C 25 0.00 1435 reject_low 24 ALIGNMENT 0 Y12-11f02.q1k chr03 869 379 169520 169519 C 491 0.00 1435 reject_low 26 ALIGNMENT 0 Y12-11f02.q1k chr13 379 849 357004 357003 F 471 0.00 1435 reject_low 10 ALIGNMENT 88 Y12-11f02.q1k chr02 1105 849 226697 226956 C 257 80.54 1435 reject_low 8 ALIGNMENT 0 Y12-11f02.q1k chr10 1033 1009 483694 483730 C 25 0.00 1435 reject_low 22 ALIGNMENT 0 Y12-11f02.q1k chr12 379 849 818073 818072 F 471 0.00 1435 reject_low 9 ALIGNMENT 75 Y12-11f02.q1k chr10 1008 850 472559 472714 C 159 84.28 1435 reject_low 25 ALIGNMENT 26 Y12-11f02.q1k chr16 1105 1034 850072 850143 C 72 81.94 1435 reject_low 20 ALIGNMENT 29 Y12-11f02.q1k chr10 1105 1034 472450 472521 C 72 83.33 1435 reject_low 25 ALIGNMENT 70 Y12-11f02.q1k chr04 1008 870 1101532 1101667 C 139 85.61 1435 reject_low 27 ALIGNMENT 26 Y12-11f02.q1k chr04 1105 1034 1101423 1101494 C 72 81.94 1435 reject_low 27 ALIGNMENT 0 Y12-11f02.q1k chr16 379 849 810225 810224 F 471 0.00 1435 reject_low 18 ALIGNMENT 79 Y12-11f02.q1k chr13 1105 870 189825 190063 C 236 80.51 1435 reject_low 15 ALIGNMENT 935 Y12-11f03.q1k chr13 36 1144 143907 145022 F 1109 95.85 1332 accept 0 ALIGNMENT 1076 Y12-11f03.p1k chr13 1283 15 148662 149934 C 1269 95.74 1305 accept 0 ALIGNMENT 1005 Y12-11f04.p1k chr16 1172 17 612624 613793 C 1156 96.63 1256 accept 0 ALIGNMENT 1056 Y12-11f04.q1k chr16 36 1253 610094 611319 F 1218 95.89 1356 accept 0 ALIGNMENT 938 Y12-11f05.q1k chr10 1273 38 198876 200102 C 1236 93.61 1302 ambiguous_trans 1 ALIGNMENT 983 Y12-11f05.p1k chr11 17 1196 311673 312860 F 1180 95.85 1309 accept 0 ALIGNMENT 892 Y12-11f05.q1k chr16 38 1143 440475 441572 F 1106 95.48 1302 ambiguous_trans 3 ALIGNMENT 908 Y12-11f05.q1k chr08 1273 38 86944 88170 C 1236 92.80 1302 ambiguous_trans 2 ALIGNMENT 922 Y12-11f06.q1k chr12 1133 35 695350 696445 C 1099 96.36 1309 accept 0 ALIGNMENT 1048 Y12-11f06.p1k chr12 6 1209 691750 692951 F 1204 96.93 1312 accept 0 ALIGNMENT 0 Y12-11f07.p1k chr08 811 860 555965 555964 F 50 0.00 1232 reject_low 2 ALIGNMENT 972 Y12-11f07.p1k chr12 15 1154 1003326 1004454 F 1140 96.67 1232 accept 0 ALIGNMENT 0 Y12-11f07.p1k chr01 836 860 229330 229329 F 25 0.00 1232 reject_low 1 ALIGNMENT 0 Y12-11f07.p1k chr13 860 801 162207 162206 C 60 0.00 1232 reject_low 3 ALIGNMENT 572 Y12-11f07.p1k chr01 33 835 228525 229330 F 803 91.16 1232 reject_low 1 ALIGNMENT 914 Y12-11f07.q1k chr12 1230 27 1005914 1007104 C 1204 94.27 1384 accept 0 ALIGNMENT 541 Y12-11f07.p1k chr13 800 16 162206 162991 C 785 90.19 1232 reject_low 3 ALIGNMENT 552 Y12-11f07.p1k chr08 33 810 555188 555965 F 778 90.87 1232 reject_low 2 ALIGNMENT 0 Y12-11f08.q1k chr10 831 373 293009 293008 C 459 0.00 1314 reject_low 3 ALIGNMENT 510 Y12-11f08.q1k chr10 1098 419 292374 293057 C 680 93.38 1314 accept_chi 2 ALIGNMENT 1063 Y12-11f08.p1k chr12 17 1196 456320 457500 F 1180 97.20 1204 accept_chi 0 ALIGNMENT 1063 Y12-11f08.p1k chr12 17 1196 465457 466637 F 1180 97.20 1204 accept_chi 1 ALIGNMENT 0 Y12-11f08.q1k chr10 418 62 293058 293057 C 357 0.00 1314 accept_chi 2 ALIGNMENT 266 Y12-11f08.q1k chr10 372 35 293008 293357 C 338 93.79 1314 reject_low 3 ALIGNMENT 1011 Y12-11f09.p1k chr02 1244 14 445790 447043 C 1231 95.53 1293 accept 0 ALIGNMENT 954 Y12-11f09.q1k chr02 28 1156 442141 443284 F 1129 96.19 1315 accept 0 ALIGNMENT 58 Y12-11f10.q1k chr03 245 526 142798 143077 F 282 76.60 1325 reject_low 26 ALIGNMENT 0 Y12-11f10.q1k chr12 62 202 731679 731678 F 141 0.00 1325 reject_low 10 ALIGNMENT 0 Y12-11f10.q1k chr03 527 846 168928 168927 F 320 0.00 1325 reject_low 18 ALIGNMENT 78 Y12-11f10.q1k chr03 493 201 149513 149799 C 293 79.52 1325 reject_low 24 ALIGNMENT 0 Y12-11f10.q1k chr10 846 473 204037 204036 C 374 0.00 1325 reject_low 27 ALIGNMENT 0 Y12-11f10.q1k chr03 203 62 90759 90758 C 142 0.00 1325 reject_low 13 ALIGNMENT 450 Y12-11f10.q1k chr16 1217 527 818741 819448 C 691 90.16 1325 reject_bad_break 0 ALIGNMENT 0 Y12-11f10.q1k chr03 62 200 124138 124137 F 139 0.00 1325 reject_low 23 ALIGNMENT 0 Y12-11f10.q1k chr12 846 527 946817 946816 C 320 0.00 1325 reject_low 16 ALIGNMENT 296 Y12-11f10.q1k chr13 194 526 168349 168681 F 333 98.50 1325 reject_low 5 ALIGNMENT 1044 Y12-11f10.p1k chr16 13 1255 814372 815618 F 1243 95.90 1301 reject_bad_break 0 ALIGNMENT 0 Y12-11f10.q1k chr15 62 198 704069 704068 F 137 0.00 1325 reject_low 9 ALIGNMENT 40 Y12-11f10.q1k chr10 378 493 537834 537948 F 116 81.03 1325 reject_low 28 ALIGNMENT 0 Y12-11f10.q1k chr01 528 846 166164 166163 F 319 0.00 1325 reject_low 20 ALIGNMENT 0 Y12-11f10.q1k chr12 203 62 947138 947137 C 142 0.00 1325 reject_low 16 ALIGNMENT 0 Y12-11f10.q1k chr03 846 301 84632 84631 C 546 0.00 1325 reject_low 29 ALIGNMENT 0 Y12-11f10.q1k chr16 526 194 819449 819443 C 333 0.00 1325 reject_bad_break 0 ALIGNMENT 302 Y12-11f10.q1k chr05 194 526 431486 431818 F 333 99.10 1325 reject_low 2 ALIGNMENT 0 Y12-11f10.q1k chr03 203 62 151839 151838 C 142 0.00 1325 reject_low 22 ALIGNMENT 0 Y12-11f10.q1k chr13 527 846 168681 168680 F 320 0.00 1325 reject_low 5 ALIGNMENT 0 Y12-11f10.q1k chr05 193 62 62475 62474 C 132 0.00 1325 reject_low 4 ALIGNMENT 0 Y12-11f10.q1k chr04 62 203 513695 513694 F 142 0.00 1325 reject_low 12 ALIGNMENT 0 Y12-11f10.q1k chr03 62 244 142798 142797 F 183 0.00 1325 reject_low 26 ALIGNMENT 0 Y12-11f10.q1k chr15 846 527 664815 664814 C 320 0.00 1325 reject_low 6 ALIGNMENT 0 Y12-11f10.q1k chr10 203 62 538339 538338 C 142 0.00 1325 reject_low 14 ALIGNMENT 0 Y12-11f10.q1k chr07 328 846 817532 817531 F 519 0.00 1325 reject_low 25 ALIGNMENT 300 Y12-11f10.q1k chr09 527 194 246216 246549 C 334 98.80 1325 reject_low 1 ALIGNMENT 206 Y12-11f10.q1k chr01 201 527 165834 166164 F 327 90.21 1325 reject_low 20 ALIGNMENT 0 Y12-11f10.q1k chr13 62 193 168349 168348 F 132 0.00 1325 reject_low 5 ALIGNMENT 0 Y12-11f10.q1k chr05 527 846 431818 431817 F 320 0.00 1325 reject_low 2 ALIGNMENT 302 Y12-11f10.q1k chr08 194 526 389180 389512 F 333 99.10 1325 reject_low 3 ALIGNMENT 0 Y12-11f10.q1k chr14 527 846 562365 562364 F 320 0.00 1325 reject_low 19 ALIGNMENT 277 Y12-11f10.q1k chr03 526 204 90437 90758 C 323 97.83 1325 reject_low 13 ALIGNMENT 61 Y12-11f10.q1k chr07 214 327 817418 817532 F 114 86.84 1325 reject_low 25 ALIGNMENT 0 Y12-11f10.q1k chr04 527 846 513586 513585 F 320 0.00 1325 reject_low 30 ALIGNMENT 0 Y12-11f10.q1k chr01 527 846 160575 160574 F 320 0.00 1325 reject_low 21 ALIGNMENT 101 Y12-11f10.q1k chr03 526 204 151518 151838 C 323 80.80 1325 reject_low 22 ALIGNMENT 0 Y12-11f10.q1k chr03 527 846 143077 143076 F 320 0.00 1325 reject_low 26 ALIGNMENT 0 Y12-11f10.q1k chr01 62 200 160246 160245 F 139 0.00 1325 reject_low 21 ALIGNMENT 285 Y12-11f10.q1k chr10 194 526 203704 204035 F 333 97.60 1325 reject_low 7 ALIGNMENT 0 Y12-11f10.q1k chr08 527 846 389512 389511 F 320 0.00 1325 reject_low 3 ALIGNMENT 142 Y12-11f10.q1k chr16 193 41 819444 819596 C 153 98.04 1325 reject_bad_break 0 ALIGNMENT 270 Y12-11f10.q1k chr03 201 526 168602 168928 F 326 96.63 1325 reject_low 18 ALIGNMENT 0 Y12-11f10.q1k chr10 62 377 537834 537833 F 316 0.00 1325 reject_low 28 ALIGNMENT 0 Y12-11f10.q1k chr15 528 846 710025 710024 F 319 0.00 1325 reject_low 8 ALIGNMENT 0 Y12-11f10.q1k chr03 203 62 85132 85131 C 142 0.00 1325 reject_low 11 ALIGNMENT 274 Y12-11f10.q1k chr07 526 217 817079 817387 C 310 98.71 1325 reject_low 17 ALIGNMENT 0 Y12-11f10.q1k chr15 62 198 709697 709696 F 137 0.00 1325 reject_low 8 ALIGNMENT 0 Y12-11f10.q1k chr07 216 62 817388 817387 C 155 0.00 1325 reject_low 17 ALIGNMENT 46 Y12-11f10.q1k chr10 472 282 204036 204224 C 191 79.06 1325 reject_low 27 ALIGNMENT 28 Y12-11f10.q1k chr03 300 215 84631 84717 C 86 80.23 1325 reject_low 29 ALIGNMENT 0 Y12-11f10.q1k chr09 846 528 246217 246216 C 319 0.00 1325 reject_low 1 ALIGNMENT 205 Y12-11f10.q1k chr01 201 526 160246 160575 F 326 90.18 1325 reject_low 21 ALIGNMENT 271 Y12-11f10.q1k chr14 204 526 562044 562365 F 323 97.21 1325 reject_low 19 ALIGNMENT 0 Y12-11f10.q1k chr04 62 453 513514 513513 F 392 0.00 1325 reject_low 30 ALIGNMENT 290 Y12-11f10.q1k chr12 203 526 731679 732002 F 324 98.77 1325 reject_low 10 ALIGNMENT 277 Y12-11f10.q1k chr12 526 204 941189 941510 C 323 97.83 1325 reject_low 15 ALIGNMENT 0 Y12-11f10.q1k chr05 62 193 431486 431485 F 132 0.00 1325 reject_low 2 ALIGNMENT 0 Y12-11f10.q1k chr12 846 527 941190 941189 C 320 0.00 1325 reject_low 15 ALIGNMENT 0 Y12-11f10.q1k chr10 281 62 204225 204224 C 220 0.00 1325 reject_low 27 ALIGNMENT 299 Y12-11f10.q1k chr05 526 194 62142 62474 C 333 98.80 1325 reject_low 4 ALIGNMENT 277 Y12-11f10.q1k chr03 528 204 84808 85131 C 325 97.54 1325 reject_low 11 ALIGNMENT 0 Y12-11f10.q1k chr10 494 846 537948 537947 F 353 0.00 1325 reject_low 28 ALIGNMENT 277 Y12-11f10.q1k chr12 526 204 946816 947137 C 323 97.83 1325 reject_low 16 ALIGNMENT 0 Y12-11f10.q1k chr10 62 193 203704 203703 F 132 0.00 1325 reject_low 7 ALIGNMENT 0 Y12-11f10.q1k chr03 527 846 124462 124461 F 320 0.00 1325 reject_low 23 ALIGNMENT 277 Y12-11f10.q1k chr10 526 204 538017 538338 C 323 97.83 1325 reject_low 14 ALIGNMENT 283 Y12-11f10.q1k chr04 204 526 513695 514016 F 323 98.45 1325 reject_low 12 ALIGNMENT 26 Y12-11f10.q1k chr04 454 526 513514 513586 F 73 80.82 1325 reject_low 30 ALIGNMENT 0 Y12-11f10.q1k chr03 62 200 168602 168601 F 139 0.00 1325 reject_low 18 ALIGNMENT 0 Y12-11f10.q1k chr12 527 846 732002 732001 F 320 0.00 1325 reject_low 10 ALIGNMENT 0 Y12-11f10.q1k chr03 200 62 149800 149799 C 139 0.00 1325 reject_low 24 ALIGNMENT 0 Y12-11f10.q1k chr10 527 846 204035 204034 F 320 0.00 1325 reject_low 7 ALIGNMENT 0 Y12-11f10.q1k chr08 62 193 389180 389179 F 132 0.00 1325 reject_low 3 ALIGNMENT 0 Y12-11f10.q1k chr03 214 62 84718 84717 C 153 0.00 1325 reject_low 29 ALIGNMENT 0 Y12-11f10.q1k chr03 846 527 90438 90437 C 320 0.00 1325 reject_low 13 ALIGNMENT 0 Y12-11f10.q1k chr07 846 527 817080 817079 C 320 0.00 1325 reject_low 17 ALIGNMENT 98 Y12-11f10.q1k chr03 201 526 124138 124462 F 326 80.06 1325 reject_low 23 ALIGNMENT 0 Y12-11f10.q1k chr12 203 62 941511 941510 C 142 0.00 1325 reject_low 15 ALIGNMENT 0 Y12-11f10.q1k chr09 193 62 246550 246549 C 132 0.00 1325 reject_low 1 ALIGNMENT 0 Y12-11f10.q1k chr05 846 527 62143 62142 C 320 0.00 1325 reject_low 4 ALIGNMENT 0 Y12-11f10.q1k chr01 62 200 165834 165833 F 139 0.00 1325 reject_low 20 ALIGNMENT 0 Y12-11f10.q1k chr15 527 846 704396 704395 F 320 0.00 1325 reject_low 9 ALIGNMENT 0 Y12-11f10.q1k chr03 846 529 84809 84808 C 318 0.00 1325 reject_low 11 ALIGNMENT 0 Y12-11f10.q1k chr04 527 846 514016 514015 F 320 0.00 1325 reject_low 12 ALIGNMENT 0 Y12-11f10.q1k chr03 846 494 149514 149513 C 353 0.00 1325 reject_low 24 ALIGNMENT 0 Y12-11f10.q1k chr10 846 527 538018 538017 C 320 0.00 1325 reject_low 14 ALIGNMENT 0 Y12-11f10.q1k chr15 193 62 665147 665146 C 132 0.00 1325 reject_low 6 ALIGNMENT 296 Y12-11f10.q1k chr15 526 194 664814 665146 C 333 98.50 1325 reject_low 6 ALIGNMENT 0 Y12-11f10.q1k chr14 62 203 562044 562043 F 142 0.00 1325 reject_low 19 ALIGNMENT 294 Y12-11f10.q1k chr15 199 526 704069 704396 F 328 98.78 1325 reject_low 9 ALIGNMENT 295 Y12-11f10.q1k chr15 199 527 709697 710025 F 329 98.78 1325 reject_low 8 ALIGNMENT 0 Y12-11f10.q1k chr07 62 213 817418 817417 F 152 0.00 1325 reject_low 25 ALIGNMENT 0 Y12-11f10.q1k chr03 846 527 151519 151518 C 320 0.00 1325 reject_low 22 ALIGNMENT 1016 Y12-11f12.p1k chr15 1265 15 188232 189496 C 1251 95.92 1308 accept 0 ALIGNMENT 971 Y12-11f12.q1k chr15 37 1219 185484 186676 F 1183 95.35 1346 accept 0 ALIGNMENT 985 Y12-11f13.q1k chr16 1207 36 637070 638259 C 1172 95.99 1316 accept 0 ALIGNMENT 1005 Y12-11f14.q1k chr15 1238 30 634568 635790 C 1209 95.45 1329 accept 0 ALIGNMENT 0 Y12-11f15.p1k chr12 566 841 472582 472581 F 276 0.00 1279 reject_low 5 ALIGNMENT 0 Y12-11f15.p1k chr06 841 188 31623 31622 C 654 0.00 1279 reject_low 4 ALIGNMENT 0 Y12-11f15.p1k chr12 62 446 472464 472463 F 385 0.00 1279 reject_low 5 ALIGNMENT 1022 Y12-11f15.q1k chr12 1175 29 452957 454098 C 1147 96.86 1305 reject_low 1 ALIGNMENT 119 Y12-11f15.p1k chr12 447 565 485696 485814 F 119 100.00 1279 reject_low 7 ALIGNMENT 0 Y12-11f15.p1k chr12 62 446 489348 489347 F 385 0.00 1279 reject_low 3 ALIGNMENT 0 Y12-11f15.p1k chr12 1139 1150 460395 460412 F 12 0.00 1279 reject_bad_break 0 ALIGNMENT 0 Y12-11f15.p1k chr12 566 841 468930 468929 F 276 0.00 1279 reject_low 2 ALIGNMENT 0 Y12-11f15.p1k chr12 62 446 485696 485695 F 385 0.00 1279 reject_low 7 ALIGNMENT 0 Y12-11f15.p1k chr12 566 841 482162 482161 F 276 0.00 1279 reject_low 6 ALIGNMENT 119 Y12-11f15.p1k chr12 447 565 482044 482162 F 119 100.00 1279 reject_low 6 ALIGNMENT 0 Y12-11f15.p1k chr06 79 62 31730 31729 C 18 0.00 1279 reject_low 4 ALIGNMENT 0 Y12-11f15.p1k chr12 62 446 482044 482043 F 385 0.00 1279 reject_low 6 ALIGNMENT 0 Y12-11f15.p1k chr12 566 841 485814 485813 F 276 0.00 1279 reject_low 7 ALIGNMENT 526 Y12-11f15.p1k chr12 17 565 468381 468930 F 549 99.64 1279 reject_low 2 ALIGNMENT 0 Y12-11f15.p1k chr12 581 841 489481 489480 F 261 0.00 1279 reject_low 3 ALIGNMENT 1022 Y12-11f15.q1k chr12 1175 29 462094 463235 C 1147 96.86 1305 reject_bad_break 0 ALIGNMENT 20 Y12-11f15.p1k chr12 1151 1238 460413 460500 F 88 75.00 1279 reject_bad_break 0 ALIGNMENT 898 Y12-11f15.p1k chr12 17 1138 459244 460394 F 1122 95.10 1279 reject_bad_break 0 ALIGNMENT 119 Y12-11f15.p1k chr12 447 565 472464 472582 F 119 100.00 1279 reject_low 5 ALIGNMENT 94 Y12-11f15.p1k chr06 187 80 31622 31729 C 108 98.15 1279 reject_low 4 ALIGNMENT 128 Y12-11f15.p1k chr12 447 580 489348 489481 F 134 98.51 1279 reject_low 3 ALIGNMENT 45 Y12-11f16.q1k chr11 259 38 494989 495210 C 222 74.77 1283 reject_low 1 ALIGNMENT 0 Y12-11f16.q1k chr11 968 476 494292 494772 C 493 0.00 1283 reject_low 1 ALIGNMENT 1020 Y12-11f16.p1k chr10 14 1260 237471 238709 F 1247 95.03 1275 accept 0 ALIGNMENT 20 Y12-11f16.q1k chr11 475 414 494773 494834 C 62 79.03 1283 reject_low 1 ALIGNMENT 996 Y12-11f16.q1k chr10 1210 38 242106 243288 C 1173 96.08 1283 accept 0 ALIGNMENT 0 Y12-11f16.q1k chr11 413 260 494835 494988 C 154 0.00 1283 reject_low 1 ALIGNMENT 35 Y12-11f16.q1k chr11 1048 969 494211 494291 C 80 82.50 1283 reject_low 1 ALIGNMENT 0 Y12-11f19.p1k chr05 431 62 61961 61960 C 370 0.00 1266 reject_low 3 ALIGNMENT 76 Y12-11f19.p1k chr15 518 432 226593 226679 C 87 96.55 1266 reject_low 2 ALIGNMENT 0 Y12-11f19.p1k chr06 431 62 181037 181036 C 370 0.00 1266 reject_low 14 ALIGNMENT 0 Y12-11f19.p1k chr07 431 62 931027 931026 C 370 0.00 1266 reject_low 6 ALIGNMENT 0 Y12-11f19.p1k chr04 503 880 83619 83618 F 378 0.00 1266 reject_low 13 ALIGNMENT 965 Y12-11f19.q1k chr13 28 1158 180566 181711 F 1131 96.11 1261 accept_trans 0 ALIGNMENT 0 Y12-11f19.p1k chr02 880 513 197624 197623 C 368 0.00 1266 reject_low 10 ALIGNMENT 72 Y12-11f19.p1k chr07 432 512 845654 845733 F 81 97.53 1266 reject_low 11 ALIGNMENT 0 Y12-11f19.p1k chr07 62 431 845654 845653 F 370 0.00 1266 reject_low 11 ALIGNMENT 0 Y12-11f19.p1k chr03 431 62 142769 142768 C 370 0.00 1266 reject_low 8 ALIGNMENT 0 Y12-11f19.p1k chr15 513 880 282244 282243 F 368 0.00 1266 reject_low 5 ALIGNMENT 71 Y12-11f19.p1k chr04 432 509 992826 992903 F 78 97.44 1266 reject_low 12 ALIGNMENT 0 Y12-11f19.p1k chr15 62 430 282163 282162 F 369 0.00 1266 reject_low 5 ALIGNMENT 731 Y12-11f19.p1k chr13 1252 228 183145 184169 C 1025 92.98 1266|0,3 accept_trans 0 ALIGNMENT 75 Y12-11f19.p1k chr15 431 512 282163 282244 F 82 97.56 1266 reject_low 5 ALIGNMENT 0 Y12-11f19.p1k chr16 510 880 572342 572341 F 371 0.00 1266 reject_low 4 ALIGNMENT 0 Y12-11f19.p1k chr10 503 880 531812 531811 F 378 0.00 1266 reject_low 15 ALIGNMENT 0 Y12-11f19.p1k chr06 880 503 180967 180966 C 378 0.00 1266 reject_low 14 ALIGNMENT 0 Y12-11f19.p1k chr02 431 62 197703 197702 C 370 0.00 1266 reject_low 10 ALIGNMENT 74 Y12-11f19.p1k chr16 430 509 572264 572342 F 80 98.75 1266 reject_low 4 ALIGNMENT 0 Y12-11f19.p1k chr10 431 62 396713 396712 C 370 0.00 1266 reject_low 1 ALIGNMENT 0 Y12-11f19.p1k chr06 62 431 162222 162221 F 370 0.00 1266 reject_low 9 ALIGNMENT 70 Y12-11f19.p1k chr04 432 502 83549 83619 F 71 100.00 1266 reject_low 13 ALIGNMENT 0 Y12-11f19.p1k chr15 880 519 226594 226593 C 362 0.00 1266 reject_low 2 ALIGNMENT 0 Y12-11f19.p1k chr04 62 431 83549 83548 F 370 0.00 1266 reject_low 13 ALIGNMENT 0 Y12-11f19.p1k chr15 431 62 226680 226679 C 370 0.00 1266 reject_low 2 ALIGNMENT 0 Y12-11f19.p1k chr10 62 431 531742 531741 F 370 0.00 1266 reject_low 15 ALIGNMENT 70 Y12-11f19.p1k chr06 502 432 180966 181036 C 71 100.00 1266 reject_low 14 ALIGNMENT 194 Y12-11f19.p1k chr13 232 13 190084 190303 C 220 98.64 1266|2,0 accept_trans 0 ALIGNMENT 75 Y12-11f19.p1k chr03 510 432 142690 142768 C 79 98.73 1266 reject_low 8 ALIGNMENT 0 Y12-11f19.p1k chr16 62 429 572264 572263 F 368 0.00 1266 reject_low 4 ALIGNMENT 0 Y12-11f19.p1k chr04 510 880 992903 992902 F 371 0.00 1266 reject_low 12 ALIGNMENT 72 Y12-11f19.p1k chr02 512 432 197623 197702 C 81 97.53 1266 reject_low 10 ALIGNMENT 0 Y12-11f19.p1k chr16 515 880 860457 860456 F 366 0.00 1266 reject_low 7 ALIGNMENT 70 Y12-11f19.p1k chr10 432 502 531742 531812 F 71 100.00 1266 reject_low 15 ALIGNMENT 0 Y12-11f19.p1k chr16 62 431 860375 860374 F 370 0.00 1266 reject_low 7 ALIGNMENT 0 Y12-11f19.p1k chr04 62 431 992826 992825 F 370 0.00 1266 reject_low 12 ALIGNMENT 0 Y12-11f19.p1k chr05 880 518 61875 61874 C 363 0.00 1266 reject_low 3 ALIGNMENT 0 Y12-11f19.p1k chr13 230 231 184167 190085 C 0 0.00 1266 accept_trans 0 ALIGNMENT 0 Y12-11f19.p1k chr03 880 511 142691 142690 C 370 0.00 1266 reject_low 8 ALIGNMENT 72 Y12-11f19.p1k chr06 432 514 162222 162304 F 83 96.39 1266 reject_low 9 ALIGNMENT 0 Y12-11f19.p1k chr10 880 520 396626 396625 C 361 0.00 1266 reject_low 1 ALIGNMENT 74 Y12-11f19.p1k chr05 517 432 61874 61960 C 86 96.51 1266 reject_low 3 ALIGNMENT 0 Y12-11f19.p1k chr06 515 880 162304 162303 F 366 0.00 1266 reject_low 9 ALIGNMENT 75 Y12-11f19.p1k chr16 432 514 860375 860457 F 83 97.59 1266 reject_low 7 ALIGNMENT 0 Y12-11f19.p1k chr07 513 880 845733 845732 F 368 0.00 1266 reject_low 11 ALIGNMENT 75 Y12-11f19.p1k chr07 514 432 930944 931026 C 83 97.59 1266 reject_low 6 ALIGNMENT 0 Y12-11f19.p1k chr07 880 515 930945 930944 C 366 0.00 1266 reject_low 6 ALIGNMENT 74 Y12-11f19.p1k chr10 519 432 396625 396712 C 88 95.45 1266 reject_low 1 ALIGNMENT 990 Y12-11f20.q1k chr05 1241 36 96588 97795 C 1206 95.27 1312 accept 0 ALIGNMENT 1000 Y12-11f20.p1k chr05 13 1236 93502 94718 F 1224 95.75 1249 accept 0 ALIGNMENT 955 Y12-11f21.p1k chr09 18 1262 90454 91695 F 1245 93.90 1273 accept 0 ALIGNMENT 979 Y12-11f21.q1k chr09 1172 32 93450 94592 C 1141 96.23 1255 accept 0 ALIGNMENT 860 Y12-11f24.q1k chr02 980 26 723909 724853 C 955 98.22 1251 accept 0 ALIGNMENT 941 Y12-11g01.q1k chr13 1152 34 426221 427345 C 1119 95.80 1276 accept 0 ALIGNMENT 968 Y12-11g01.p1k chr13 25 1157 423345 424463 F 1133 97.00 1274 accept 0 ALIGNMENT 991 Y12-11g02.q1k chr13 1180 29 822821 823977 C 1152 96.44 1280 accept 0 ALIGNMENT 1002 Y12-11g02.p1k chr13 15 1155 819412 820539 F 1141 97.02 1263 accept 0 ALIGNMENT 500 Y12-11g03.p1k chr12 519 1232 451419 452157 F 714 91.60 1257 reject_low 1 ALIGNMENT 224 Y12-11g03.p1k chr12 866 1232 489754 490125 F 367 88.56 1257 reject_low 2 ALIGNMENT 963 Y12-11g03.q1k chr12 1197 28 454092 455288 C 1170 95.30 1279 reject_low 1 ALIGNMENT 0 Y12-11g03.p1k chr12 62 865 489754 489753 F 804 0.00 1257 reject_low 2 ALIGNMENT 0 Y12-11g03.p1k chr12 62 518 451419 451418 F 457 0.00 1257 reject_low 1 ALIGNMENT 849 Y12-11g03.p1k chr12 17 1232 460029 461294 F 1216 91.61 1257 accept 0 ALIGNMENT 967 Y12-11g03.q1k chr12 1227 28 463196 464425 C 1200 94.75 1279 accept 0 ALIGNMENT 946 Y12-11g04.q1k chr15 1182 40 655572 656731 C 1143 95.10 1295 accept_chi 1 ALIGNMENT 1063 Y12-11g04.p1k chr15 19 1210 1043079 1044272 F 1192 96.98 1229 accept_chi 0 ALIGNMENT 988 Y12-11g06.q1k chr05 1209 41 194553 195719 C 1169 94.95 1363 accept 0 ALIGNMENT 1023 Y12-11g06.p1k chr05 14 1133 190924 192051 F 1120 97.86 1247 accept 0 ALIGNMENT 912 Y12-11g07.q1k chr16 1134 34 370220 371333 C 1101 95.19 1314 accept 0 ALIGNMENT 1031 Y12-11g07.p1k chr16 20 1234 366239 367470 F 1215 96.54 1359 accept 0 ALIGNMENT 954 Y12-11g08.q1k chr03 37 1163 185112 186253 F 1127 96.10 1305 accept 0 ALIGNMENT 1020 Y12-11g08.p1k chr03 1243 26 188102 189324 C 1218 95.81 1343 accept 0 ALIGNMENT 625 Y12-11g09.p1k chr05 16 1073 496634 497694 F 1058 87.62 1320 ambiguous_trans 27 ALIGNMENT 0 Y12-11g09.q1k chr04 701 404 1336433 1336730 C 298 0.00 1359 reject_low 28 ALIGNMENT 635 Y12-11g09.p1k chr16 16 1141 808780 809911 F 1126 86.77 1320 ambiguous_trans 18 ALIGNMENT 635 Y12-11g09.p1k chr10 1141 16 478612 479743 C 1126 86.77 1320 ambiguous_trans 17 ALIGNMENT 641 Y12-11g09.p1k chr16 1141 16 57102 58233 C 1126 86.94 1320 ambiguous_trans 12 ALIGNMENT 626 Y12-11g09.p1k chr16 1141 16 845059 846190 C 1126 86.50 1320 ambiguous_trans 25 ALIGNMENT 641 Y12-11g09.p1k chr07 1141 16 536415 537546 C 1126 86.94 1320 ambiguous_trans 8 ALIGNMENT 54 Y12-11g09.q1k chr04 898 702 1336236 1336432 C 197 77.66 1359 reject_low 28 ALIGNMENT 905 Y12-11g09.p1k chr14 16 1141 100747 101878 F 1126 94.76 1320 ambiguous_trans 4 ALIGNMENT 641 Y12-11g09.p1k chr13 1141 16 196982 198113 C 1126 86.94 1320 ambiguous_trans 11 ALIGNMENT 644 Y12-11g09.p1k chr16 16 1141 854768 855899 F 1126 87.03 1320 ambiguous_trans 5 ALIGNMENT 635 Y12-11g09.p1k chr07 16 1141 565986 567117 F 1126 86.77 1320 ambiguous_trans 16 ALIGNMENT 632 Y12-11g09.p1k chr13 1141 16 184815 185946 C 1126 86.68 1320 ambiguous_trans 21 ALIGNMENT 641 Y12-11g09.p1k chr05 16 1141 447535 448666 F 1126 86.94 1320 ambiguous_trans 7 ALIGNMENT 641 Y12-11g09.p1k chr10 1141 16 473028 474159 C 1126 86.94 1320 ambiguous_trans 9 ALIGNMENT 635 Y12-11g09.p1k chr04 16 1141 649636 650767 F 1126 86.77 1320 ambiguous_trans 15 ALIGNMENT 965 Y12-11g09.q1k chr05 1185 28 432969 434138 C 1158 96.29 1359 accept 0 ALIGNMENT 641 Y12-11g09.p1k chr04 1141 16 1207341 1208472 C 1126 86.94 1320 ambiguous_trans 6 ALIGNMENT 638 Y12-11g09.p1k chr12 1141 16 651473 652604 C 1126 86.86 1320 ambiguous_trans 13 ALIGNMENT 623 Y12-11g09.p1k chr02 1141 16 260221 261352 C 1126 86.41 1320 ambiguous_trans 26 ALIGNMENT 996 Y12-11g09.p1k chr04 1214 16 803468 804675 C 1199 95.66 1320 ambiguous_trans_ua 3 ALIGNMENT 626 Y12-11g09.p1k chr04 16 1141 882437 883568 F 1126 86.50 1320 ambiguous_trans 23 ALIGNMENT 629 Y12-11g09.p1k chr13 16 1141 376839 377970 F 1126 86.59 1320 ambiguous_trans 22 ALIGNMENT 29 Y12-11g09.q1k chr04 403 320 1336731 1336814 C 84 79.76 1359 reject_low 28 ALIGNMENT 0 Y12-11g09.q1k chr04 319 62 1336815 1336814 C 258 0.00 1359 reject_low 28 ALIGNMENT 1028 Y12-11g09.p1k chr13 16 1250 361141 362386 F 1235 95.63 1320 ambiguous_trans 2 ALIGNMENT 632 Y12-11g09.p1k chr04 1141 16 1096413 1097544 C 1126 86.68 1320 ambiguous_trans 20 ALIGNMENT 638 Y12-11g09.p1k chr15 1141 16 118353 119484 C 1126 86.86 1320 ambiguous_trans 14 ALIGNMENT 641 Y12-11g09.p1k chr12 16 1141 480117 481248 F 1126 86.94 1320 ambiguous_trans 10 ALIGNMENT 626 Y12-11g09.p1k chr15 1141 16 595466 596597 C 1126 86.50 1320 ambiguous_trans 24 ALIGNMENT 1037 Y12-11g09.p1k chr02 1250 16 221573 222818 C 1235 95.87 1320 ambiguous_trans 1 ALIGNMENT 638 Y12-11g09.p1k chr12 1087 16 593850 594925 C 1072 87.78 1320 ambiguous_trans 19 ALIGNMENT 971 Y12-11g10.q1k chr04 1175 35 1047807 1048962 C 1141 95.97 1371 accept 0 ALIGNMENT 945 Y12-11g10.p1k chr04 11 1207 1044800 1045997 F 1197 94.90 1317 accept 0 ALIGNMENT 1038 Y12-11g11.p1k chr07 21 1225 801169 802384 F 1205 96.60 1316 accept 0 ALIGNMENT 973 Y12-11g11.q1k chr07 1294 35 803862 805139 C 1260 94.29 1409 accept 0 ALIGNMENT 123 Y12-11g12.p1k chr04 19 204 134428 134615 F 186 89.78 1270 reject_low 1 ALIGNMENT 906 Y12-11g12.p1k chr04 19 1080 228425 229504 F 1062 95.86 1270 accept 0 ALIGNMENT 0 Y12-11g12.p1k chr04 205 843 134615 134614 F 639 0.00 1270 reject_low 1 ALIGNMENT 934 Y12-11g12.q1k chr04 1118 37 233508 234605 C 1082 96.40 1343 accept 0 ALIGNMENT 151 Y12-11g13.q1k chr11 839 1138 1800 2099 F 300 83.67 1306 reject_low 16 ALIGNMENT 408 Y12-11g13.p1k chr09 982 458 10305 10826 C 525 93.33 1276 reject_low 2 ALIGNMENT 0 Y12-11g13.q1k chr01 62 796 1749 1748 F 735 0.00 1306 reject_low 9 ALIGNMENT 237 Y12-11g13.q1k chr10 839 1161 8765 9087 F 323 91.33 1306 reject_low 3 ALIGNMENT 251 Y12-11g13.q1k chr07 819 1161 6259 6601 F 343 91.25 1306 reject_low 10 ALIGNMENT 0 Y12-11g13.q1k chr02 738 62 809537 809536 C 677 0.00 1306 reject_low 7 ALIGNMENT 0 Y12-11g13.q1k chr07 62 818 6259 6258 F 757 0.00 1306 reject_low 10 ALIGNMENT 233 Y12-11g13.q1k chr12 819 1161 13052 13394 F 343 89.50 1306 reject_low 14 ALIGNMENT 0 Y12-11g13.q1k chr12 724 62 1063413 1063412 C 663 0.00 1306 reject_low 4 ALIGNMENT 0 Y12-11g13.q1k chr09 62 838 8782 8781 F 777 0.00 1306 reject_low 2 ALIGNMENT 0 Y12-11g13.q1k chr07 738 62 1080793 1080792 C 677 0.00 1306 reject_low 6 ALIGNMENT 0 Y12-11g13.q1k chr02 62 818 7574 7573 F 757 0.00 1306 reject_low 11 ALIGNMENT 128 Y12-11g13.q1k chr13 1138 819 922722 923042 C 320 80.62 1306 reject_low 19 ALIGNMENT 0 Y12-11g13.p1k chr14 383 890 755629 755628 F 508 0.00 1276 reject_low 5 ALIGNMENT 408 Y12-11g13.p1k chr10 982 458 10288 10809 C 525 93.33 1276 reject_low 3 ALIGNMENT 142 Y12-11g13.q1k chr01 826 1155 176631 176958 F 330 81.52 1306 reject_low 17 ALIGNMENT 0 Y12-11g13.q1k chr10 62 838 8765 8764 F 777 0.00 1306 reject_low 3 ALIGNMENT 223 Y12-11g13.q1k chr05 1161 769 63779 64180 C 393 86.51 1306 reject_low 8 ALIGNMENT 239 Y12-11g13.q1k chr15 819 1161 11517 11859 F 343 90.09 1306 reject_low 12 ALIGNMENT 0 Y12-11g13.q1k chr13 818 62 923043 923042 C 757 0.00 1306 reject_low 19 ALIGNMENT 0 Y12-11g13.p1k chr12 62 656 1059293 1059292 F 595 0.00 1276 reject_low 4 ALIGNMENT 232 Y12-11g13.q1k chr12 1161 725 1062967 1063412 C 437 85.58 1306 reject_low 4 ALIGNMENT 0 Y12-11g13.q1k chr15 62 818 11517 11516 F 757 0.00 1306 reject_low 12 ALIGNMENT 0 Y12-11g13.p1k chr09 457 62 10827 10826 C 396 0.00 1276 reject_low 2 ALIGNMENT 327 Y12-11g13.p1k chr12 657 1224 1059293 1059860 F 568 87.32 1276 reject_low 4 ALIGNMENT 233 Y12-11g13.q1k chr14 1161 819 781969 782311 C 343 89.50 1306 reject_low 15 ALIGNMENT 0 Y12-11g13.q1k chr12 62 818 13052 13051 F 757 0.00 1306 reject_low 14 ALIGNMENT 0 Y12-11g13.q1k chr05 768 62 64181 64180 C 707 0.00 1306 reject_low 8 ALIGNMENT 246 Y12-11g13.q1k chr02 1161 739 809102 809536 C 423 87.00 1306 reject_low 7 ALIGNMENT 0 Y12-11g13.q1k chr04 838 62 1523606 1523605 C 777 0.00 1306 reject_low 13 ALIGNMENT 0 Y12-11g13.q1k chr06 62 846 99222 99221 F 785 0.00 1306 reject_low 18 ALIGNMENT 242 Y12-11g13.q1k chr01 797 1161 1749 2118 F 365 89.32 1306 reject_low 9 ALIGNMENT 168 Y12-11g13.p1k chr14 16 382 755266 755629 F 367 83.92 1276 reject_low 5 ALIGNMENT 861 Y12-11g13.p1k chr03 16 1156 303257 304391 F 1141 92.99 1276 ambiguous_tel 1 ALIGNMENT 269 Y12-11g13.q1k chr07 1161 739 1080363 1080792 C 423 88.89 1306 reject_low 6 ALIGNMENT 240 Y12-11g13.q1k chr04 1161 839 1523283 1523605 C 323 91.64 1306 reject_low 13 ALIGNMENT 0 Y12-11g13.q1k chr11 62 838 1800 1799 F 777 0.00 1306 reject_low 16 ALIGNMENT 137 Y12-11g13.q1k chr06 847 1132 99222 99507 F 286 82.87 1306 reject_low 18 ALIGNMENT 979 Y12-11g13.q1k chr08 28 1161 11097 12232 F 1134 96.30 1306 accept 0 ALIGNMENT 0 Y12-11g13.q1k chr01 62 825 176631 176630 F 764 0.00 1306 reject_low 17 ALIGNMENT 251 Y12-11g13.q1k chr02 819 1159 7574 7914 F 341 91.50 1306 reject_low 11 ALIGNMENT 237 Y12-11g13.q1k chr09 839 1161 8782 9104 F 323 91.33 1306 reject_low 2 ALIGNMENT 0 Y12-11g13.q1k chr14 818 62 782312 782311 C 757 0.00 1306 reject_low 15 ALIGNMENT 0 Y12-11g13.p1k chr10 457 62 10810 10809 C 396 0.00 1276 reject_low 3 ALIGNMENT 915 Y12-11g14.p1k chr12 21 1102 743410 744475 F 1082 97.04 1298 accept 0 ALIGNMENT 1002 Y12-11g14.q1k chr12 1217 36 746901 748090 C 1182 96.62 1298 accept 0 ALIGNMENT 0 Y12-11g15.q1k chr06 288 62 31730 31729 C 227 0.00 1358 reject_low 4 ALIGNMENT 0 Y12-11g15.q1k chr06 799 397 31623 31622 C 403 0.00 1358 reject_low 4 ALIGNMENT 0 Y12-11g15.q1k chr12 62 655 482044 482043 F 594 0.00 1358 reject_low 6 ALIGNMENT 0 Y12-11g15.q1k chr12 775 799 485814 485813 F 25 0.00 1358 reject_low 7 ALIGNMENT 0 Y12-11g15.q1k chr12 62 655 489348 489347 F 594 0.00 1358 reject_low 3 ALIGNMENT 94 Y12-11g15.q1k chr06 396 289 31622 31729 C 108 98.15 1358 reject_low 4 ALIGNMENT 119 Y12-11g15.q1k chr12 656 774 482044 482162 F 119 100.00 1358 reject_low 6 ALIGNMENT 1073 Y12-11g15.p1k chr12 1315 27 454108 455405 C 1289 95.27 1331 reject_low 1 ALIGNMENT 1073 Y12-11g15.p1k chr12 1315 27 463245 464542 C 1289 95.27 1331 accept 0 ALIGNMENT 128 Y12-11g15.q1k chr12 656 789 489348 489481 F 134 98.51 1358 reject_low 3 ALIGNMENT 119 Y12-11g15.q1k chr12 656 774 485696 485814 F 119 100.00 1358 reject_low 7 ALIGNMENT 705 Y12-11g15.q1k chr12 36 774 468192 468930 F 739 99.59 1358 reject_low 2 ALIGNMENT 0 Y12-11g15.q1k chr12 775 799 472582 472581 F 25 0.00 1358 reject_low 5 ALIGNMENT 915 Y12-11g15.q1k chr12 36 1159 459055 460195 F 1124 95.37 1358 accept 0 ALIGNMENT 0 Y12-11g15.q1k chr12 62 655 485696 485695 F 594 0.00 1358 reject_low 7 ALIGNMENT 0 Y12-11g15.q1k chr12 775 799 468930 468929 F 25 0.00 1358 reject_low 2 ALIGNMENT 0 Y12-11g15.q1k chr12 62 655 472464 472463 F 594 0.00 1358 reject_low 5 ALIGNMENT 0 Y12-11g15.q1k chr12 775 799 482162 482161 F 25 0.00 1358 reject_low 6 ALIGNMENT 119 Y12-11g15.q1k chr12 656 774 472464 472582 F 119 100.00 1358 reject_low 5 ALIGNMENT 931 Y12-11g16.q1k chr04 1180 38 670550 671714 C 1143 94.66 1303 accept 0 ALIGNMENT 1056 Y12-11g16.p1k chr04 18 1300 666450 667751 F 1283 95.17 1313 accept 0 ALIGNMENT 714 Y12-11g17.p1k chr07 20 775 816069 816824 F 756 100.00 775 ambiguous_trans 4 ALIGNMENT 695 Y12-11g17.p1k chr04 24 775 876437 877188 F 752 99.34 775 ambiguous_trans 11 ALIGNMENT 714 Y12-11g17.p1k chr03 20 775 89427 90182 F 756 100.00 775 ambiguous_trans 1 ALIGNMENT 575 Y12-11g17.p1k chr16 20 774 848989 849743 F 755 93.91 775 ambiguous_trans 21 ALIGNMENT 690 Y12-11g17.p1k chr04 775 20 878886 879641 C 756 98.94 775 ambiguous_trans 13 ALIGNMENT 702 Y12-11g17.p1k chr12 20 775 945806 946561 F 756 99.47 775 ambiguous_trans 9 ALIGNMENT 536 Y12-11g17.p1k chr13 24 775 200913 201664 F 752 92.29 775 ambiguous_trans 24 ALIGNMENT 705 Y12-11g17.p1k chr04 775 20 646085 646840 C 756 99.60 775 ambiguous_trans 7 ALIGNMENT 276 Y12-11g17.p1k chr10 20 616 482539 483135 F 597 84.25 775 ambiguous_trans 26 ALIGNMENT 695 Y12-11g17.p1k chr15 775 24 704651 705402 C 752 99.34 775 ambiguous_trans 12 ALIGNMENT 569 Y12-11g17.p1k chr16 774 20 851218 851972 C 755 93.64 775 ambiguous_trans 22 ALIGNMENT 711 Y12-11g17.p1k chr14 775 20 562620 563375 C 756 99.87 775 ambiguous_trans 5 ALIGNMENT 575 Y12-11g17.p1k chr13 20 774 188742 189496 F 755 93.91 775 ambiguous_trans 20 ALIGNMENT 648 Y12-11g17.p1k chr07 775 20 562435 563190 C 756 97.09 775 ambiguous_trans 15 ALIGNMENT 714 Y12-11g17.p1k chr06 20 775 142525 143280 F 756 100.00 775 ambiguous_trans 2 ALIGNMENT 705 Y12-11g17.p1k chr15 20 775 974899 975654 F 756 99.60 775 ambiguous_trans 8 ALIGNMENT 0 Y12-11g17.p1k chr10 617 775 483135 483134 F 159 0.00 775 ambiguous_trans 26 ALIGNMENT 705 Y12-11g17.p1k chr04 775 20 514271 515026 C 756 99.60 775 ambiguous_trans 6 ALIGNMENT 714 Y12-11g17.p1k chr07 775 20 569331 570086 C 756 100.00 775 ambiguous_trans 3 ALIGNMENT 978 Y12-11g17.q1k chr10 35 1279 350325 351556 F 1245 94.78 1339 accept 0 ALIGNMENT 594 Y12-11g17.p1k chr10 20 775 476955 477710 F 756 94.71 775 ambiguous_trans 19 ALIGNMENT 612 Y12-11g17.p1k chr04 20 775 985782 986537 F 756 95.50 775 ambiguous_trans 18 ALIGNMENT 648 Y12-11g17.p1k chr12 20 775 597721 598476 F 756 97.09 775 ambiguous_trans 16 ALIGNMENT 648 Y12-11g17.p1k chr16 775 20 805229 805984 C 756 97.09 775 ambiguous_trans 17 ALIGNMENT 678 Y12-11g17.p1k chr14 20 775 523720 524475 F 756 98.41 775 ambiguous_trans 14 ALIGNMENT 467 Y12-11g17.p1k chr05 774 20 493084 493838 C 755 89.14 775 ambiguous_trans 25 ALIGNMENT 699 Y12-11g17.p1k chr02 20 775 34258 35013 F 756 99.34 775 ambiguous_trans 10 ALIGNMENT 536 Y12-11g17.p1k chr05 775 24 443984 444735 C 752 92.29 775 ambiguous_trans 23 ALIGNMENT 941 Y12-11g18.q1k chr15 30 1167 125039 126195 F 1138 94.11 1271 accept 0 ALIGNMENT 0 Y12-11g18.q1k chr04 816 759 1443758 1443757 C 58 0.00 1271 reject_low 1 ALIGNMENT 239 Y12-11g18.q1k chr04 758 44 1443757 1444471 C 715 78.60 1271 reject_low 1 ALIGNMENT 1077 Y12-11g18.p1k chr15 1233 16 129831 131055 C 1218 97.04 1294 accept 0 ALIGNMENT 548 Y12-11g19.p1k chr02 243 1088 34472 35315 F 846 88.42 1357 ambiguous_trans 11 ALIGNMENT 544 Y12-11g19.p1k chr14 275 1088 523965 524777 F 814 89.93 1357 ambiguous_trans 14 ALIGNMENT 554 Y12-11g19.p1k chr04 1088 243 645783 646626 C 846 88.65 1357 ambiguous_trans 6 ALIGNMENT 542 Y12-11g19.p1k chr04 243 1088 1211482 1212325 F 846 88.18 1357 ambiguous_trans 15 ALIGNMENT 560 Y12-11g19.p1k chr07 1088 243 569029 569872 C 846 88.89 1357 ambiguous_trans 2 ALIGNMENT 554 Y12-11g19.p1k chr04 243 1088 876647 877490 F 846 88.65 1357 ambiguous_trans 7 ALIGNMENT 554 Y12-11g19.p1k chr15 243 1088 975113 975956 F 846 88.65 1357 ambiguous_trans 9 ALIGNMENT 560 Y12-11g19.p1k chr07 243 1088 816283 817126 F 846 88.89 1357 ambiguous_trans 3 ALIGNMENT 548 Y12-11g19.p1k chr12 243 1088 655616 656459 F 846 88.42 1357 ambiguous_trans 12 ALIGNMENT 560 Y12-11g19.p1k chr14 1088 243 562318 563161 C 846 88.89 1357 ambiguous_trans 4 ALIGNMENT 388 Y12-11g19.p1k chr16 243 1062 849203 850021 F 820 82.44 1357 reject_low 22 ALIGNMENT 554 Y12-11g19.p1k chr04 1088 243 878584 879427 C 846 88.65 1357 ambiguous_trans 8 ALIGNMENT 536 Y12-11g19.p1k chr07 1088 243 562133 562976 C 846 87.94 1357 ambiguous_trans 16 ALIGNMENT 548 Y12-11g19.p1k chr15 1088 243 704349 705192 C 846 88.42 1357 ambiguous_trans 13 ALIGNMENT 536 Y12-11g19.p1k chr16 1088 243 804927 805770 C 846 87.94 1357 ambiguous_trans 18 ALIGNMENT 431 Y12-11g19.p1k chr13 243 1088 201123 201966 F 846 83.81 1357 reject_low 20 ALIGNMENT 560 Y12-11g19.p1k chr06 243 1088 142739 143582 F 846 88.89 1357 ambiguous_trans 1 ALIGNMENT 554 Y12-11g19.p1k chr04 1088 243 513969 514812 C 846 88.65 1357 ambiguous_trans 5 ALIGNMENT 381 Y12-11g19.p1k chr16 1062 243 850940 851758 C 820 82.32 1357 reject_low 23 ALIGNMENT 388 Y12-11g19.p1k chr13 243 1062 188956 189774 F 820 82.44 1357 reject_low 21 ALIGNMENT 551 Y12-11g19.p1k chr12 243 1088 946020 946863 F 846 88.53 1357 ambiguous_trans 10 ALIGNMENT 560 Y12-11g19.p1k chr03 243 1088 89641 90484 F 846 88.89 1357 ambiguous_trans 0 ALIGNMENT 536 Y12-11g19.p1k chr12 243 1088 597935 598778 F 846 87.94 1357 ambiguous_trans 17 ALIGNMENT 485 Y12-11g19.p1k chr10 243 1088 477169 478012 F 846 85.93 1357 ambiguous_trans 19 ALIGNMENT 966 Y12-11g20.p1k chr01 1235 18 125939 127172 C 1218 94.58 1324 accept 0 ALIGNMENT 922 Y12-11g20.q1k chr01 32 1110 122999 124094 F 1079 96.39 1268 accept 0 ALIGNMENT 961 Y12-11g21.q1k chr15 1168 35 908083 909227 C 1134 95.15 1230 accept 0 ALIGNMENT 981 Y12-11g21.p1k chr15 19 1267 904615 905889 F 1249 94.40 1274 accept 0 ALIGNMENT 1002 Y12-11g23.q1k chr12 1201 38 54511 55665 C 1164 95.79 1254 accept_chi 0 ALIGNMENT 857 Y12-11g23.p1k chr05 52 1130 535712 536806 F 1079 94.53 1244 accept_chi 1 ALIGNMENT 1023 Y12-11h01.q1k chr06 1218 34 213171 214371 C 1185 96.12 1275 accept 0 ALIGNMENT 985 Y12-11h01.p1k chr06 17 1131 208538 209663 F 1115 96.77 1218 accept 0 ALIGNMENT 1029 Y12-11h03.p1k chr12 17 1244 380285 381523 F 1228 95.28 1247 accept 0 ALIGNMENT 939 Y12-11h03.q1k chr12 1162 38 381807 382936 C 1125 95.02 1297 accept 0 ALIGNMENT 989 Y12-11h05.p1k chr15 18 1255 857324 858578 F 1238 94.83 1255 accept 0 ALIGNMENT 932 Y12-11h05.q1k chr15 1109 40 860821 861909 C 1070 95.89 1326 accept 0 ALIGNMENT 679 Y12-11h06.p1k chr16 1112 184 156373 157299 C 929 92.25 1349 accept 0 ALIGNMENT 415 Y12-11h06.q1k chr16 32 720 153293 153972 F 689 88.24 1308 accept 0 ALIGNMENT 961 Y12-11h07.q1k chr16 40 1237 623628 624829 F 1198 94.32 1352 accept 0 ALIGNMENT 995 Y12-11h07.p1k chr16 1176 18 626772 627942 C 1159 96.29 1324 accept 0 ALIGNMENT 1060 Y12-11h09.p1k chr04 1239 14 723293 724531 C 1226 96.33 1296 accept 0 ALIGNMENT 998 Y12-11h09.q1k chr04 37 1186 720202 721356 F 1150 96.87 1359 accept 0 ALIGNMENT 997 Y12-11h10.p1k chr07 1280 14 683859 685126 C 1267 94.55 1317 accept 0 ALIGNMENT 941 Y12-11h10.q1k chr07 40 1186 681762 682907 F 1147 95.38 1386 accept 0 ALIGNMENT 991 Y12-11h11.q1k chr12 1183 34 190912 192076 C 1150 97.04 1366 accept 0 ALIGNMENT 1037 Y12-11h11.p1k chr12 14 1251 188177 189424 F 1238 96.45 1300 accept 0 ALIGNMENT 1011 Y12-11h13.q1k chr16 38 1232 502016 503222 F 1195 95.48 1299 accept 0 ALIGNMENT 1029 Y12-11h13.p1k chr16 1240 14 507029 508265 C 1227 95.68 1251 accept 0 ALIGNMENT 1034 Y12-11h14.p1k chr12 21 1259 358092 359331 F 1239 95.56 1260 accept 0 ALIGNMENT 939 Y12-11h14.q1k chr12 1124 39 360470 361572 C 1086 96.50 1272 accept 0 ALIGNMENT 0 Y12-11h15.q1k chr07 1031 62 530057 530056 C 970 0.00 1329 reject_low 1 ALIGNMENT 1048 Y12-11h15.p1k chr12 17 1273 859760 861028 F 1257 95.15 1318 accept 0 ALIGNMENT 0 Y12-11h15.q1k chr05 1030 62 309029 309028 C 969 0.00 1329 reject_low 2 ALIGNMENT 22 Y12-11h15.q1k chr07 1059 1032 530029 530056 C 28 100.00 1329 reject_low 1 ALIGNMENT 1009 Y12-11h15.q1k chr12 1210 41 863533 864714 C 1170 96.07 1329 accept 0 ALIGNMENT 20 Y12-11h15.q1k chr05 1055 1031 309004 309028 C 25 100.00 1329 reject_low 2 ALIGNMENT 926 Y12-11h17.p1k chr07 20 1178 832033 833208 F 1159 94.48 1291 accept 0 ALIGNMENT 962 Y12-11h17.q1k chr07 1192 37 836523 837688 C 1156 95.67 1296 accept 0 ALIGNMENT 969 Y12-11h19.q1k chr13 38 1288 432756 434034 F 1251 93.76 1299 accept 0 ALIGNMENT 969 Y12-11h19.p1k chr13 1140 24 436560 437694 C 1117 96.51 1295 accept 0 ALIGNMENT 0 Y12-11h20.q1k chr13 866 350 651621 651620 C 517 0.00 1305 reject_low 1 ALIGNMENT 994 Y12-11h20.q1k chr16 37 1218 75676 76869 F 1182 95.52 1305 accept 0 ALIGNMENT 207 Y12-11h20.q1k chr13 349 60 651620 651909 C 290 90.69 1305 reject_low 1 ALIGNMENT 1038 Y12-11h20.p1k chr16 1288 21 80351 81630 C 1268 94.56 1328 accept 0 ALIGNMENT 931 Y12-11h21.q1k chr04 41 1275 918084 919309 F 1235 93.20 1278 accept 0 ALIGNMENT 1034 Y12-11h21.p1k chr04 1251 16 921460 922699 C 1236 95.95 1266 accept 0 ALIGNMENT 998 Y12-11h22.p1k chr02 1168 19 772865 774017 C 1150 96.61 1246 accept 0 ALIGNMENT 975 Y12-11h22.q1k chr02 36 1205 769604 770783 F 1170 95.21 1238 accept 0 ALIGNMENT 987 Y12-11h24.q1k chr03 28 1209 108832 110004 F 1182 96.02 1237 accept 0 ALIGNMENT 700 Y12-11h24.p1k chr03 1043 11 113510 114526 C 1033 91.97 1247 accept 0 ALIGNMENT 1035 Y12-11i01.p1k chr15 1188 21 75552 76720 C 1168 96.66 1513 accept 0 ALIGNMENT 526 Y12-11i01.p1k chr06 43 1103 33552 34613 F 1061 83.69 1513 reject_low 1 ALIGNMENT 1056 Y12-11i01.q1k chr15 23 1283 70949 72223 F 1261 95.00 1291 accept 0 ALIGNMENT 962 Y12-11i02.q1k chr03 27 1145 118734 119866 F 1119 96.51 1258 accept 0 ALIGNMENT 995 Y12-11i02.p1k chr03 1167 19 122401 123559 C 1149 96.17 1423 accept 0 ALIGNMENT 944 Y12-11i03.q1k chr04 1128 34 709265 710365 C 1095 96.35 1295 accept 0 ALIGNMENT 1059 Y12-11i03.p1k chr04 18 1311 705555 706848 F 1294 95.36 1314 accept 0 ALIGNMENT 1006 Y12-11i04.p1k chr07 1214 4 24814 26019 C 1211 95.95 1289 accept 0 ALIGNMENT 1024 Y12-11i04.q1k chr07 25 1187 21801 22965 F 1163 96.47 1314 accept 0 ALIGNMENT 1050 Y12-11i05.p1k chr05 18 1225 234078 235298 F 1208 96.69 1280 accept 0 ALIGNMENT 914 Y12-11i05.q1k chr05 1105 26 236975 238076 C 1080 95.93 1308 accept 0 ALIGNMENT 801 Y12-11i06.p1k chr13 1117 5 802510 803610 C 1113 92.27 1267 accept 0 ALIGNMENT 845 Y12-11i06.q1k chr13 31 1049 799425 800429 F 1019 95.78 1415 accept 0 ALIGNMENT 997 Y12-11i07.q1k chr03 1221 34 136137 137333 C 1188 95.45 1348 accept 0 ALIGNMENT 1049 Y12-11i07.p1k chr03 21 1213 132971 134167 F 1193 96.81 1237 accept 0 ALIGNMENT 909 Y12-11i08.q1k chr12 38 1137 762354 763469 F 1100 96.55 1315 accept 0 ALIGNMENT 1032 Y12-11i08.p1k chr12 1224 31 765323 766513 C 1194 96.40 1230 accept 0 ALIGNMENT 0 Y12-11i09.q1k chr10 819 498 741824 741823 C 322 0.00 1305 reject_low 2 ALIGNMENT 1001 Y12-11i09.p1k chr05 1201 22 8539 9732 C 1180 96.27 1305 accept 0 ALIGNMENT 331 Y12-11i09.q1k chr04 32 497 3431 3893 F 466 91.42 1305 reject_low 1 ALIGNMENT 0 Y12-11i09.q1k chr04 498 819 3893 3892 F 322 0.00 1305 reject_low 1 ALIGNMENT 331 Y12-11i09.q1k chr10 497 32 741823 742285 C 466 91.42 1305 reject_low 2 ALIGNMENT 981 Y12-11i09.q1k chr05 32 1179 7087 8247 F 1148 96.34 1305 accept 0 ALIGNMENT 979 Y12-11i11.q1k chr07 1288 34 1033045 1034317 C 1255 93.86 1328 accept 0 ALIGNMENT 1003 Y12-11i11.p1k chr07 23 1314 1030302 1031594 F 1292 94.04 1321 accept 0 ALIGNMENT 1056 Y12-11i12.p1k chr14 1284 14 682898 684176 C 1271 95.44 1285 accept 0 ALIGNMENT 972 Y12-11i12.q1k chr14 39 1171 679174 680306 F 1133 95.94 1343 accept 0 ALIGNMENT 664 Y12-11i13.p1k chr04 17 1217 1234600 1235772 F 1201 87.76 1355 accept 0 ALIGNMENT 646 Y12-11i13.q1k chr04 1045 31 1238407 1239418 C 1015 88.97 1327 accept 0 ALIGNMENT 945 Y12-11i14.p1k chr12 1117 20 858054 859152 C 1098 96.17 1290 accept_chi 0 ALIGNMENT 896 Y12-11i14.q1k chr08 1101 34 356422 357490 C 1068 95.69 1330 accept_chi 1 ALIGNMENT 993 Y12-11i16.q1k chr09 33 1198 360333 361512 F 1166 96.05 1319 accept 0 ALIGNMENT 914 Y12-11i16.p1k chr09 1211 17 365582 366827 C 1195 92.89 1306 accept 0 ALIGNMENT 1068 Y12-11i17.p1k chr02 1214 13 466307 467513 C 1202 96.84 1387 accept 0 ALIGNMENT 969 Y12-11i17.q1k chr02 38 1111 461350 462441 F 1074 97.77 1262 accept 0 ALIGNMENT 946 Y12-11i18.q1k chr10 1143 34 674794 675917 C 1110 96.94 1287 accept 0 ALIGNMENT 1018 Y12-11i18.p1k chr10 12 1124 670560 671680 F 1113 98.02 1333 accept 0 ALIGNMENT 999 Y12-11i22.q1k chr07 37 1255 955914 957143 F 1219 94.67 1263 accept 0 ALIGNMENT 978 Y12-11i22.p1k chr07 1160 19 958642 959799 C 1142 96.32 1241 accept 0 ALIGNMENT 1027 Y12-11i23.q1k chr12 37 1215 461763 462952 F 1179 96.35 1233 accept 1 ALIGNMENT 1027 Y12-11i23.q1k chr12 37 1215 452626 453815 F 1179 96.35 1233 accept 0 ALIGNMENT 1066 Y12-11i23.p1k chr12 1248 18 466205 467455 C 1231 95.94 1255 accept 1 ALIGNMENT 1066 Y12-11i23.p1k chr12 1248 18 457068 458318 C 1231 95.94 1255 accept 0 ALIGNMENT 991 Y12-11i24.p1k chr05 19 1226 71335 72546 F 1208 95.36 1243 accept 0 ALIGNMENT 982 Y12-11i24.q1k chr05 1117 37 74638 75707 C 1081 98.33 1275 accept 0 ALIGNMENT 20 Y12-11i24.p1k chr04 1008 985 1346534 1346557 C 24 100.00 1243 reject_low 1 ALIGNMENT 0 Y12-11i24.p1k chr04 984 62 1346558 1346557 C 923 0.00 1243 reject_low 1 ALIGNMENT 971 Y12-11j01.q1k chr02 37 1235 484109 485295 F 1199 94.41 1309 accept_chi 0 ALIGNMENT 970 Y12-11j01.p1k chr12 16 1185 255964 257151 F 1170 95.47 1412 accept_chi 1 ALIGNMENT 1003 Y12-11j03.q1k chr02 37 1242 685275 686490 F 1206 94.86 1303 accept 0 ALIGNMENT 1038 Y12-11j03.p1k chr02 1270 15 687990 689258 C 1256 95.38 1286 accept 0 ALIGNMENT 82 Y12-11j04.p1k chr09 571 203 423155 423523 C 369 75.07 1263 reject_low 1 ALIGNMENT 981 Y12-11j04.p1k chr02 1125 21 706990 708108 C 1105 97.65 1263 accept 0 ALIGNMENT 919 Y12-11j04.q1k chr02 39 1224 703846 705032 F 1186 92.66 1335 accept 0 ALIGNMENT 0 Y12-11j04.p1k chr09 879 572 423156 423155 C 308 0.00 1263 reject_low 1 ALIGNMENT 0 Y12-11j04.p1k chr09 202 62 423524 423523 C 141 0.00 1263 reject_low 1 ALIGNMENT 92 Y12-11j05.p1k chr16 125 16 135786 135897 C 110 96.36 1251 reject_low 1 ALIGNMENT 0 Y12-11j05.p1k chr16 848 126 135787 135786 C 723 0.00 1251 reject_low 1 ALIGNMENT 904 Y12-11j05.q1k chr07 30 1097 249085 250165 F 1068 95.41 1307 accept 0 ALIGNMENT 961 Y12-11j05.p1k chr07 1248 16 253509 254754 C 1233 93.92 1251 accept 0 ALIGNMENT 830 Y12-11j06.q1k chr16 35 1011 153286 154274 F 977 95.70 1254 accept 0 ALIGNMENT 1009 Y12-11j06.p1k chr16 1245 18 156180 157420 C 1228 95.36 1250 accept 0 ALIGNMENT 954 Y12-11j07.q1k chr16 38 1157 267861 268997 F 1120 96.34 1318 accept 0 ALIGNMENT 1011 Y12-11j07.p1k chr16 1209 16 273395 274586 C 1194 96.57 1227 accept 0 ALIGNMENT 969 Y12-11j08.p1k chr15 14 1159 79946 81083 F 1146 96.34 1226 accept 0 ALIGNMENT 851 Y12-11j08.q1k chr03 1041 25 10018 11051 C 1017 95.38 1278 ambiguous_tel 1 ALIGNMENT 851 Y12-11j08.q1k chr11 25 1030 658385 659404 F 1006 95.63 1278 ambiguous_tel 2 ALIGNMENT 939 Y12-11j09.p1k chr16 1125 14 816998 818121 C 1112 96.94 1285 accept 0 ALIGNMENT 1007 Y12-11j09.q1k chr16 37 1237 813478 814687 F 1201 95.75 1334 accept 0 ALIGNMENT 908 Y12-11j10.q1k chr04 36 1067 570941 571981 F 1032 96.90 1296 accept 0 ALIGNMENT 968 Y12-11j10.p1k chr04 1250 16 575344 576596 C 1235 94.17 1288 accept 0 ALIGNMENT 735 Y12-11j11.p1k chr15 999 21 517412 518383 C 979 92.65 1275 accept 0 ALIGNMENT 897 Y12-11j11.q1k chr15 42 1103 513629 514704 F 1062 95.57 1325 accept 0 ALIGNMENT 974 Y12-11j12.q1k chr11 1239 35 545584 546804 C 1205 94.69 1344 accept 0 ALIGNMENT 971 Y12-11j12.p1k chr11 17 1208 542542 543759 F 1192 95.39 1248 accept 0 ALIGNMENT 916 Y12-11j13.q1k chr07 1144 36 656641 657763 C 1109 95.85 1315 accept 0 ALIGNMENT 1046 Y12-11j13.p1k chr07 16 1262 653500 654753 F 1247 95.43 1300 accept 0 ALIGNMENT 947 Y12-11j14.q1k chr16 1127 40 729620 730722 C 1088 97.06 1289 accept 0 ALIGNMENT 922 Y12-11j14.p1k chr16 23 1077 727572 728633 F 1055 96.87 1244 accept 0 ALIGNMENT 1022 Y12-11j16.p1k chr16 1189 19 791986 793163 C 1171 96.16 1321 accept 0 ALIGNMENT 935 Y12-11j16.q1k chr16 36 1125 788742 789844 F 1090 95.60 1321 accept 0 ALIGNMENT 75 Y12-11j17.q1k chr14 133 52 560685 560766 C 82 96.34 1293 reject_low 6 ALIGNMENT 1028 Y12-11j17.p1k chr03 1161 16 297746 298905 C 1146 97.56 1358 accept 0 ALIGNMENT 76 Y12-11j17.q1k chr02 52 131 266378 266457 F 80 97.50 1293 reject_low 7 ALIGNMENT 77 Y12-11j17.q1k chr14 51 135 104804 104889 F 85 96.47 1293 reject_low 2 ALIGNMENT 76 Y12-11j17.q1k chr09 51 133 325745 325827 F 83 96.39 1293 reject_low 3 ALIGNMENT 0 Y12-11j17.q1k chr15 859 127 354039 354038 C 733 0.00 1293 reject_low 10 ALIGNMENT 75 Y12-11j17.q1k chr09 51 132 175027 175108 F 82 96.34 1293 reject_low 8 ALIGNMENT 75 Y12-11j17.q1k chr15 126 52 354038 354112 C 75 100.00 1293 reject_low 10 ALIGNMENT 0 Y12-11j17.q1k chr14 136 859 104889 104888 F 724 0.00 1293 reject_low 2 ALIGNMENT 0 Y12-11j17.q1k chr14 859 134 560686 560685 C 726 0.00 1293 reject_low 6 ALIGNMENT 0 Y12-11j17.q1k chr10 859 126 59100 59099 C 734 0.00 1293 reject_low 5 ALIGNMENT 0 Y12-11j17.q1k chr15 135 859 113883 113882 F 725 0.00 1293 reject_low 1 ALIGNMENT 0 Y12-11j17.q1k chr09 133 859 175108 175107 F 727 0.00 1293 reject_low 8 ALIGNMENT 896 Y12-11j17.q1k chr03 38 1155 295466 296595 F 1118 95.35 1293 accept 0 ALIGNMENT 76 Y12-11j17.q1k chr04 125 50 434260 434335 C 76 100.00 1293 reject_low 4 ALIGNMENT 0 Y12-11j17.q1k chr02 132 859 266457 266456 F 728 0.00 1293 reject_low 7 ALIGNMENT 0 Y12-11j17.q1k chr04 859 126 434261 434260 C 734 0.00 1293 reject_low 4 ALIGNMENT 76 Y12-11j17.q1k chr08 126 51 116100 116175 C 76 100.00 1293 reject_low 9 ALIGNMENT 0 Y12-11j17.q1k chr08 859 127 116101 116100 C 733 0.00 1293 reject_low 9 ALIGNMENT 76 Y12-11j17.q1k chr10 125 50 59099 59174 C 76 100.00 1293 reject_low 5 ALIGNMENT 80 Y12-11j17.q1k chr15 47 134 113796 113883 F 88 96.59 1293 reject_low 1 ALIGNMENT 0 Y12-11j17.q1k chr09 134 859 325827 325826 F 726 0.00 1293 reject_low 3 ALIGNMENT 1037 Y12-11j18.p1k chr12 17 1178 556508 557669 F 1162 96.90 1400 accept 0 ALIGNMENT 1003 Y12-11j18.q1k chr12 1212 37 560212 561394 C 1176 95.92 1317 accept 0 ALIGNMENT 914 Y12-11j19.p1k chr11 16 1173 438669 439838 F 1158 94.39 1270 accept 0 ALIGNMENT 986 Y12-11j19.q1k chr11 1172 38 443471 444608 C 1135 95.86 1288 accept 0 ALIGNMENT 638 Y12-11j20.p1k chr12 5 920 556601 557529 F 916 91.59 1216 accept 0 ALIGNMENT 0 Y12-11j21.p1k chr10 374 899 486349 486348 F 526 0.00 1266 reject_low 2 ALIGNMENT 1027 Y12-11j21.q1k chr10 26 1253 470308 471541 F 1228 95.44 1273 accept_chi 1 ALIGNMENT 1073 Y12-11j21.p1k chr10 1253 24 485431 486668 C 1230 96.75 1266 accept_chi 0 ALIGNMENT 32 Y12-11j21.p1k chr10 335 373 486310 486349 F 39 94.87 1266 reject_low 2 ALIGNMENT 0 Y12-11j21.p1k chr10 62 334 486310 486309 F 273 0.00 1266 reject_low 2 ALIGNMENT 1064 Y12-11j23.p1k chr05 23 1230 77197 78412 F 1208 96.85 1230 accept 0 ALIGNMENT 1017 Y12-11j23.q1k chr05 1160 35 80595 81713 C 1126 97.69 1270 accept 0 ALIGNMENT 0 Y12-11j23.q1k chr04 62 512 1290974 1290973 F 451 0.00 1270 reject_low 1 ALIGNMENT 20 Y12-11j23.q1k chr04 513 551 1290974 1291012 F 39 100.00 1270 reject_low 1 ALIGNMENT 0 Y12-11j23.q1k chr04 552 840 1291012 1291011 F 289 0.00 1270 reject_low 1 ALIGNMENT 917 Y12-11k01.p1k chr10 18 1073 132461 133500 F 1056 97.54 1303 accept_chi 1 ALIGNMENT 923 Y12-11k01.q1k chr07 31 1077 510535 511583 F 1047 97.04 1256 accept_chi 0 ALIGNMENT 973 Y12-11k02.q1k chr11 32 1244 158966 160169 F 1213 95.14 1247 accept_chi 1 ALIGNMENT 0 Y12-11k02.q1k chr08 810 291 147858 147857 C 520 0.00 1247 reject_low 2 ALIGNMENT 131 Y12-11k02.q1k chr08 290 34 147857 148113 C 257 84.05 1247 reject_low 2 ALIGNMENT 880 Y12-11k02.p1k chr10 1021 19 180573 181569 C 1003 97.21 1264 accept_chi 0 ALIGNMENT 949 Y12-11k03.q1k chr12 1119 12 462981 464097 C 1108 95.94 1271 accept 0 ALIGNMENT 969 Y12-11k03.p1k chr12 14 1277 467281 468546 F 1264 94.15 1339 reject_low 1 ALIGNMENT 969 Y12-11k03.p1k chr12 14 1277 458144 459409 F 1264 94.15 1339 accept 0 ALIGNMENT 949 Y12-11k03.q1k chr12 1119 12 453844 454960 C 1108 95.94 1271 reject_low 2 ALIGNMENT 994 Y12-11k05.p1k chr04 15 1249 709193 710430 F 1235 94.41 1291 accept 0 ALIGNMENT 929 Y12-11k05.q1k chr04 1097 32 714255 715327 C 1066 96.44 1329 accept 0 ALIGNMENT 129 Y12-11k06.p1k chr11 25 314 394472 394758 F 290 82.41 1384 accept_chi 1 ALIGNMENT 927 Y12-11k06.q1k chr13 1204 34 866925 868088 C 1171 94.53 1371 accept_chi 0 ALIGNMENT 938 Y12-11k07.q1k chr09 1137 34 272780 273897 C 1104 95.92 1352 accept 0 ALIGNMENT 1065 Y12-11k07.p1k chr09 14 1274 269847 271122 F 1261 95.80 1348 accept 0 ALIGNMENT 981 Y12-11k08.q1k chr11 1169 37 397941 399088 C 1133 96.91 1346 accept 0 ALIGNMENT 969 Y12-11k08.p1k chr11 21 1163 394369 395519 F 1143 96.15 1311 accept 0 ALIGNMENT 1052 Y12-11k10.p1k chr12 1208 15 419002 420213 C 1194 96.98 1357 accept 0 ALIGNMENT 936 Y12-11k10.q1k chr12 35 1132 415336 416443 F 1098 95.90 1344 accept 0 ALIGNMENT 1011 Y12-11k11.q1k chr06 38 1201 80537 81702 F 1164 96.31 1354 accept 0 ALIGNMENT 1047 Y12-11k11.p1k chr06 1262 15 84380 85642 C 1248 95.99 1313 accept 0 ALIGNMENT 883 Y12-11k12.q1k chr14 1056 38 730325 731349 C 1019 97.35 1304 accept 0 ALIGNMENT 1014 Y12-11k12.p1k chr14 15 1246 727921 729169 F 1232 95.29 1306 accept 0 ALIGNMENT 456 Y12-11k13.p1k chr15 32 872 502743 503579 F 841 85.61 1399 accept 0 ALIGNMENT 920 Y12-11k15.q1k chr15 1061 28 507288 508339 C 1034 97.29 1254 accept 0 ALIGNMENT 1068 Y12-11k15.p1k chr15 17 1232 502727 503952 F 1216 97.12 1260 accept 0 ALIGNMENT 1003 Y12-11k16.p1k chr02 1168 12 479887 481025 C 1157 97.58 1280 accept 1 ALIGNMENT 1013 Y12-11k16.q1k chr05 33 1196 26337 27502 F 1164 96.05 1331 ambiguous_tel 0 ALIGNMENT 783 Y12-11k17.q1k chr15 38 1129 121601 122699 F 1092 92.22 1306 ambiguous_trans 19 ALIGNMENT 864 Y12-11k17.q1k chr02 38 1189 263472 264639 F 1152 93.49 1306 ambiguous_trans 7 ALIGNMENT 786 Y12-11k17.q1k chr04 38 1129 1099661 1100759 F 1092 92.31 1306 ambiguous_trans 14 ALIGNMENT 867 Y12-11k17.q1k chr15 38 1189 598714 599881 F 1152 93.58 1306 ambiguous_trans 6 ALIGNMENT 786 Y12-11k17.q1k chr13 38 1129 188063 189161 F 1092 92.31 1306 ambiguous_trans 16 ALIGNMENT 1011 Y12-11k17.p1k chr14 1159 18 444658 445809 C 1142 97.11 1300 accept 0 ALIGNMENT 767 Y12-11k17.q1k chr13 38 1084 200230 201279 F 1047 92.65 1306 ambiguous_trans 22 ALIGNMENT 843 Y12-11k17.q1k chr07 1189 38 818251 819418 C 1152 92.88 1306 ambiguous_trans 11 ALIGNMENT 936 Y12-11k17.q1k chr10 38 1189 481860 483027 F 1152 95.66 1306 ambiguous_trans 4 ALIGNMENT 783 Y12-11k17.q1k chr16 38 1129 60350 61448 F 1092 92.22 1306 ambiguous_trans 20 ALIGNMENT 881 Y12-11k17.q1k chr12 38 1124 654723 655815 F 1087 95.22 1306 ambiguous_trans 10 ALIGNMENT 918 Y12-11k17.q1k chr14 1189 38 97463 98630 C 1152 95.14 1306 ambiguous_trans 5 ALIGNMENT 756 Y12-11k17.q1k chr16 1129 38 851553 852651 C 1092 91.39 1306 ambiguous_trans 24 ALIGNMENT 882 Y12-11k17.q1k chr04 1129 38 987643 988741 C 1092 95.15 1306 ambiguous_trans 8 ALIGNMENT 786 Y12-11k17.q1k chr07 1129 38 562771 563869 C 1092 92.31 1306 ambiguous_trans 15 ALIGNMENT 837 Y12-11k17.q1k chr05 1189 38 493350 494517 C 1152 92.88 1306 ambiguous_trans 12 ALIGNMENT 954 Y12-11k17.q1k chr13 1189 38 357857 359024 C 1152 96.18 1306 ambiguous_trans 2 ALIGNMENT 834 Y12-11k17.q1k chr13 1189 38 373555 374722 C 1152 92.80 1306 ambiguous_trans 13 ALIGNMENT 762 Y12-11k17.q1k chr10 38 1129 476276 477374 F 1092 91.58 1306 ambiguous_trans 23 ALIGNMENT 786 Y12-11k17.q1k chr16 38 1129 848310 849408 F 1092 92.31 1306 ambiguous_trans 17 ALIGNMENT 882 Y12-11k17.q1k chr04 38 1129 1210589 1211687 F 1092 95.15 1306 ambiguous_trans 9 ALIGNMENT 957 Y12-11k17.q1k chr02 38 1189 224935 226102 F 1152 96.27 1306 ambiguous_trans 1 ALIGNMENT 945 Y12-11k17.q1k chr07 38 1189 539663 540830 F 1152 95.92 1306 ambiguous_trans 3 ALIGNMENT 783 Y12-11k17.q1k chr12 1129 38 476902 478000 C 1092 92.22 1306 ambiguous_trans 18 ALIGNMENT 749 Y12-11k17.q1k chr16 1124 38 805571 806663 C 1087 91.26 1306 ambiguous_trans 25 ALIGNMENT 767 Y12-11k17.q1k chr05 1084 38 444369 445418 C 1047 92.65 1306 ambiguous_trans 21 ALIGNMENT 1037 Y12-11k19.p1k chr04 1290 24 707415 708686 C 1267 94.87 1304 accept 0 ALIGNMENT 1026 Y12-11k19.q1k chr04 35 1248 705374 706588 F 1214 95.80 1287 accept 0 ALIGNMENT 930 Y12-11k20.p1k chr15 16 1105 875269 876343 F 1090 97.16 1345 accept 0 ALIGNMENT 1018 Y12-11k20.q1k chr15 1264 35 878553 879787 C 1230 95.04 1281 accept 0 ALIGNMENT 0 Y12-11k21.q1k chr14 62 540 507419 507418 F 479 0.00 1281 reject_low 2 ALIGNMENT 935 Y12-11k21.q1k chr14 1133 38 506857 507949 C 1096 96.35 1281 reject_bad_break 0 ALIGNMENT 0 Y12-11k21.q1k chr14 569 854 507446 507445 F 286 0.00 1281 reject_low 2 ALIGNMENT 0 Y12-11k21.q1k chr14 1165 764 506839 507221 C 402 0.00 1281 reject_low 1 ALIGNMENT 0 Y12-11k21.q1k chr14 1165 1134 506839 506856 C 32 0.00 1281 reject_bad_break 0 ALIGNMENT 27 Y12-11k21.q1k chr14 1257 1166 506755 506838 C 92 81.52 1281 reject_bad_break 0 reject_low 1 ALIGNMENT 24 Y12-11k21.q1k chr14 541 568 507419 507446 F 28 100.00 1281 reject_low 2 ALIGNMENT 378 Y12-11k21.q1k chr14 763 343 507222 507644 C 421 98.10 1281 reject_low 1 ALIGNMENT 1054 Y12-11k21.p1k chr14 22 1240 501999 503220 F 1219 95.98 1315 reject_bad_break 0 ALIGNMENT 0 Y12-11k21.q1k chr14 342 62 507645 507644 C 281 0.00 1281 reject_low 1 ALIGNMENT 1044 Y12-11k22.q1k chr14 1243 29 640580 641800 C 1215 96.13 1246 accept_chi 0 ALIGNMENT 996 Y12-11k22.p1k chr15 23 1241 1004539 1005770 F 1219 95.65 1279 accept_chi 1 ALIGNMENT 1036 Y12-11k23.p1k chr13 1251 16 805436 806680 C 1236 95.87 1258 accept 0 ALIGNMENT 938 Y12-11k23.q1k chr13 31 1219 801153 802346 F 1189 94.03 1228 accept 0 ALIGNMENT 878 Y12-11k24.q1k chr09 36 1119 318209 319270 F 1084 95.94 1278 accept 0 ALIGNMENT 1009 Y12-11k24.p1k chr09 1196 12 323049 324232 C 1185 95.95 1245 accept 0 ALIGNMENT 945 Y12-11l02.q1k chr12 32 1161 336155 337269 F 1130 96.46 1265 accept 0 ALIGNMENT 921 Y12-11l02.p1k chr12 1065 14 340172 341212 C 1052 96.67 1251 accept 0 ALIGNMENT 764 Y12-11l03.p1k chr12 5 991 256002 256994 F 987 94.12 1323 accept 0 ALIGNMENT 72 Y12-11l04.p1k chr14 47 156 519388 519497 F 110 90.00 1276 reject_low 25 ALIGNMENT 0 Y12-11l04.p1k chr12 62 496 793916 793915 F 435 0.00 1276 reject_low 8 ALIGNMENT 0 Y12-11l04.p1k chr07 159 861 876286 876285 F 703 0.00 1276 reject_low 7 ALIGNMENT 914 Y12-11l04.q1k chr10 1064 34 208040 209080 C 1031 97.19 1244 accept 0 ALIGNMENT 84 Y12-11l04.p1k chr01 156 30 165827 165953 C 127 90.55 1276 reject_low 17 ALIGNMENT 0 Y12-11l04.p1k chr12 861 157 220670 220669 C 705 0.00 1276 reject_low 18 ALIGNMENT 0 Y12-11l04.p1k chr11 498 62 513046 513045 C 437 0.00 1276 reject_low 14 ALIGNMENT 0 Y12-11l04.p1k chr04 580 861 569041 569040 F 282 0.00 1276 reject_low 15 ALIGNMENT 0 Y12-11l04.p1k chr12 62 497 427132 427131 F 436 0.00 1276 reject_low 9 ALIGNMENT 86 Y12-11l04.p1k chr07 30 158 876157 876286 F 129 90.70 1276 reject_low 7 ALIGNMENT 78 Y12-11l04.p1k chr09 578 499 324293 324372 C 80 100.00 1276 reject_low 12 ALIGNMENT 76 Y12-11l04.p1k chr07 499 579 531614 531694 F 81 98.77 1276 reject_low 16 ALIGNMENT 78 Y12-11l04.p1k chr13 499 578 463553 463632 F 80 100.00 1276 reject_low 13 ALIGNMENT 0 Y12-11l04.p1k chr10 581 861 355453 355452 F 281 0.00 1276 reject_low 4 ALIGNMENT 0 Y12-11l04.p1k chr14 157 861 525063 525062 F 705 0.00 1276 reject_low 26 ALIGNMENT 79 Y12-11l04.p1k chr12 497 576 793916 793995 F 80 100.00 1276 reject_low 8 ALIGNMENT 978 Y12-11l04.p1k chr10 30 1190 204187 205358 F 1161 96.38 1276 accept 0 ALIGNMENT 0 Y12-11l04.p1k chr09 157 861 325162 325161 F 705 0.00 1276 reject_low 27 ALIGNMENT 83 Y12-11l04.p1k chr10 495 578 541418 541501 F 84 100.00 1276 reject_low 1 ALIGNMENT 0 Y12-11l04.p1k chr10 579 861 541501 541500 F 283 0.00 1276 reject_low 1 ALIGNMENT 0 Y12-11l04.p1k chr01 861 159 160238 160237 C 703 0.00 1276 reject_low 6 ALIGNMENT 0 Y12-11l04.p1k chr13 579 861 463632 463631 F 283 0.00 1276 reject_low 13 ALIGNMENT 0 Y12-11l04.p1k chr11 861 578 512968 512967 C 284 0.00 1276 reject_low 14 ALIGNMENT 77 Y12-11l04.p1k chr12 498 579 427132 427213 F 82 98.78 1276 reject_low 9 ALIGNMENT 0 Y12-11l04.p1k chr14 157 861 519497 519496 F 705 0.00 1276 reject_low 25 ALIGNMENT 0 Y12-11l04.p1k chr07 861 579 544574 544573 C 283 0.00 1276 reject_low 11 ALIGNMENT 0 Y12-11l04.p1k chr12 577 861 793995 793994 F 285 0.00 1276 reject_low 8 ALIGNMENT 78 Y12-11l04.p1k chr09 154 30 300409 300535 C 125 89.60 1276 reject_low 21 ALIGNMENT 0 Y12-11l04.p1k chr09 495 62 336421 336420 C 434 0.00 1276 reject_low 3 ALIGNMENT 78 Y12-11l04.p1k chr07 578 499 544573 544652 C 80 100.00 1276 reject_low 11 ALIGNMENT 78 Y12-11l04.p1k chr13 156 30 357004 357130 C 127 88.98 1276 reject_low 19 ALIGNMENT 0 Y12-11l04.p1k chr07 861 162 817394 817393 C 700 0.00 1276 reject_low 5 ALIGNMENT 0 Y12-11l04.p1k chr07 144 861 817397 817396 F 718 0.00 1276 reject_low 28 ALIGNMENT 78 Y12-11l04.p1k chr02 499 578 405954 406033 F 80 100.00 1276 reject_low 10 ALIGNMENT 76 Y12-11l04.p1k chr04 499 579 568961 569041 F 81 98.77 1276 reject_low 15 ALIGNMENT 78 Y12-11l04.p1k chr13 156 30 362586 362712 C 127 88.98 1276 reject_low 20 ALIGNMENT 0 Y12-11l04.p1k chr13 861 157 372697 372696 C 705 0.00 1276 reject_low 22 ALIGNMENT 0 Y12-11l04.p1k chr04 62 498 568961 568960 F 437 0.00 1276 reject_low 15 ALIGNMENT 0 Y12-11l04.p1k chr13 861 157 357005 357004 C 705 0.00 1276 reject_low 19 ALIGNMENT 0 Y12-11l04.p1k chr15 62 494 571954 571953 F 433 0.00 1276 reject_low 2 ALIGNMENT 78 Y12-11l04.p1k chr12 156 30 220669 220795 C 127 88.98 1276 reject_low 18 ALIGNMENT 0 Y12-11l04.p1k chr07 580 861 531694 531693 F 282 0.00 1276 reject_low 16 ALIGNMENT 0 Y12-11l04.p1k chr15 579 861 572037 572036 F 283 0.00 1276 reject_low 2 ALIGNMENT 75 Y12-11l04.p1k chr13 156 30 378284 378410 C 127 88.19 1276 reject_low 23 ALIGNMENT 0 Y12-11l04.p1k chr14 861 578 519094 519093 C 284 0.00 1276 reject_low 24 ALIGNMENT 87 Y12-11l04.p1k chr01 158 30 160237 160365 C 129 90.70 1276 reject_low 6 ALIGNMENT 0 Y12-11l04.p1k chr09 498 62 324373 324372 C 437 0.00 1276 reject_low 12 ALIGNMENT 80 Y12-11l04.p1k chr10 499 580 355372 355453 F 82 100.00 1276 reject_low 4 ALIGNMENT 0 Y12-11l04.p1k chr09 861 579 336339 336338 C 283 0.00 1276 reject_low 3 ALIGNMENT 0 Y12-11l04.p1k chr07 62 498 531614 531613 F 437 0.00 1276 reject_low 16 ALIGNMENT 80 Y12-11l04.p1k chr07 161 30 817393 817524 C 132 88.64 1276 reject_low 5 ALIGNMENT 0 Y12-11l04.p1k chr10 62 494 541418 541417 F 433 0.00 1276 reject_low 1 ALIGNMENT 0 Y12-11l04.p1k chr14 506 62 519164 519163 C 445 0.00 1276 reject_low 24 ALIGNMENT 0 Y12-11l04.p1k chr09 861 579 324294 324293 C 283 0.00 1276 reject_low 12 ALIGNMENT 0 Y12-11l04.p1k chr13 861 157 378285 378284 C 705 0.00 1276 reject_low 23 ALIGNMENT 72 Y12-11l04.p1k chr14 47 156 524954 525063 F 110 90.00 1276 reject_low 26 ALIGNMENT 75 Y12-11l04.p1k chr13 156 30 372696 372822 C 127 88.19 1276 reject_low 22 ALIGNMENT 0 Y12-11l04.p1k chr13 861 157 362587 362586 C 705 0.00 1276 reject_low 20 ALIGNMENT 0 Y12-11l04.p1k chr02 62 498 405954 405953 F 437 0.00 1276 reject_low 10 ALIGNMENT 0 Y12-11l04.p1k chr01 861 157 165828 165827 C 705 0.00 1276 reject_low 17 ALIGNMENT 0 Y12-11l04.p1k chr09 861 155 300410 300409 C 707 0.00 1276 reject_low 21 ALIGNMENT 42 Y12-11l04.p1k chr07 33 143 817289 817397 F 111 81.98 1276 reject_low 28 ALIGNMENT 78 Y12-11l04.p1k chr11 577 499 512967 513045 C 79 100.00 1276 reject_low 14 ALIGNMENT 0 Y12-11l04.p1k chr10 62 498 355372 355371 F 437 0.00 1276 reject_low 4 ALIGNMENT 83 Y12-11l04.p1k chr15 495 578 571954 572037 F 84 100.00 1276 reject_low 2 ALIGNMENT 0 Y12-11l04.p1k chr02 579 861 406033 406032 F 283 0.00 1276 reject_low 10 ALIGNMENT 55 Y12-11l04.p1k chr09 30 156 325034 325162 F 127 83.46 1276 reject_low 27 ALIGNMENT 0 Y12-11l04.p1k chr13 62 498 463553 463552 F 437 0.00 1276 reject_low 13 ALIGNMENT 70 Y12-11l04.p1k chr14 577 507 519093 519163 C 71 100.00 1276 reject_low 24 ALIGNMENT 0 Y12-11l04.p1k chr07 498 62 544653 544652 C 437 0.00 1276 reject_low 11 ALIGNMENT 82 Y12-11l04.p1k chr09 578 496 336338 336420 C 83 100.00 1276 reject_low 3 ALIGNMENT 0 Y12-11l04.p1k chr12 580 861 427213 427212 F 282 0.00 1276 reject_low 9 ALIGNMENT 1017 Y12-11l05.p1k chr07 1233 13 218295 219506 C 1221 96.48 1281 accept 0 ALIGNMENT 938 Y12-11l05.q1k chr07 27 1170 212714 213874 F 1144 95.19 1363 accept 0 ALIGNMENT 992 Y12-11l06.q1k chr05 35 1214 34493 35685 F 1180 96.10 1369 accept 0 ALIGNMENT 981 Y12-11l06.p1k chr05 1218 14 37301 38492 C 1205 96.51 1295 accept 0 ALIGNMENT 0 Y12-11l07.p1k chr11 323 745 458121 458120 F 423 0.00 1363 reject_low 18 ALIGNMENT 0 Y12-11l07.p1k chr07 318 745 823313 823312 F 428 0.00 1363 reject_low 4 ALIGNMENT 0 Y12-11l07.p1k chr08 316 745 543941 543940 F 430 0.00 1363 reject_low 11 ALIGNMENT 0 Y12-11l07.p1k chr08 318 745 549639 549638 F 428 0.00 1363 reject_low 17 ALIGNMENT 249 Y12-11l07.p1k chr11 11 322 457810 458121 F 312 95.83 1363 reject_low 18 ALIGNMENT 262 Y12-11l07.p1k chr08 11 315 543637 543941 F 305 97.70 1363 reject_low 11 ALIGNMENT 262 Y12-11l07.p1k chr13 11 315 357031 357335 F 305 97.70 1363 reject_low 14 ALIGNMENT 85 Y12-11l07.p1k chr15 208 67 594618 594759 C 142 89.44 1363 reject_low 23 ALIGNMENT 264 Y12-11l07.p1k chr13 322 11 184163 184474 C 312 97.44 1363 reject_low 2 ALIGNMENT 0 Y12-11l07.p1k chr08 316 745 116747 116746 F 430 0.00 1363 reject_low 10 ALIGNMENT 268 Y12-11l07.p1k chr15 319 11 594817 595125 C 309 98.06 1363 reject_low 3 ALIGNMENT 0 Y12-11l07.p1k chr07 316 745 817729 817728 F 430 0.00 1363 reject_low 5 ALIGNMENT 0 Y12-11l07.p1k chr07 745 107 817290 817289 C 639 0.00 1363 reject_low 24 ALIGNMENT 171 Y12-11l07.p1k chr01 11 315 160266 160575 F 305 88.20 1363 reject_low 21 ALIGNMENT 0 Y12-11l07.p1k chr15 745 320 594818 594817 C 426 0.00 1363 reject_low 3 ALIGNMENT 259 Y12-11l07.p1k chr07 315 11 931691 931995 C 305 97.38 1363 reject_low 19 ALIGNMENT 0 Y12-11l07.p1k chr15 315 62 227140 227139 C 254 0.00 1363 accept 0 ALIGNMENT 0 Y12-11l07.p1k chr13 745 323 184164 184163 C 423 0.00 1363 reject_low 2 ALIGNMENT 51 Y12-11l07.p1k chr07 106 11 817289 817383 C 96 87.50 1363 reject_low 24 ALIGNMENT 262 Y12-11l07.p1k chr13 315 11 189752 190056 C 305 97.70 1363 reject_low 13 ALIGNMENT 262 Y12-11l07.p1k chr14 11 315 96637 96941 F 305 97.70 1363 reject_low 16 ALIGNMENT 262 Y12-11l07.p1k chr11 11 315 517122 517426 F 305 97.70 1363 reject_low 12 ALIGNMENT 266 Y12-11l07.p1k chr07 11 317 823007 823313 F 307 98.05 1363 reject_low 4 ALIGNMENT 0 Y12-11l07.p1k chr07 745 317 535215 535214 C 429 0.00 1363 reject_low 8 ALIGNMENT 262 Y12-11l07.p1k chr13 11 315 362613 362917 F 305 97.70 1363 reject_low 15 ALIGNMENT 0 Y12-11l07.p1k chr14 316 745 96941 96940 F 430 0.00 1363 reject_low 16 ALIGNMENT 260 Y12-11l07.p1k chr08 11 317 549333 549639 F 307 97.39 1363 reject_low 17 ALIGNMENT 0 Y12-11l07.p1k chr11 316 745 517426 517425 F 430 0.00 1363 reject_low 12 ALIGNMENT 256 Y12-11l07.p1k chr02 316 11 221039 221346 C 306 97.06 1363 reject_low 20 ALIGNMENT 265 Y12-11l07.p1k chr07 11 315 817425 817729 F 305 98.03 1363 reject_low 5 ALIGNMENT 263 Y12-11l07.p1k chr02 316 11 259575 259880 C 306 97.71 1363 reject_low 7 ALIGNMENT 0 Y12-11l07.p1k chr13 316 745 357335 357334 F 430 0.00 1363 reject_low 14 ALIGNMENT 0 Y12-11l07.p1k chr01 316 745 166163 166162 F 430 0.00 1363 reject_low 22 ALIGNMENT 306 Y12-11l07.p1k chr15 683 316 226772 227139 C 368 95.65 1363 accept 0 ALIGNMENT 92 Y12-11l07.p1k chr14 1059 896 96452 96609 C 164 88.41 1363 reject_low 1 ALIGNMENT 0 Y12-11l07.p1k chr07 745 316 931692 931691 C 430 0.00 1363 reject_low 19 ALIGNMENT 262 Y12-11l07.p1k chr02 315 11 265161 265465 C 305 97.70 1363 reject_low 9 ALIGNMENT 0 Y12-11l07.p1k chr13 316 745 362917 362916 F 430 0.00 1363 reject_low 15 ALIGNMENT 262 Y12-11l07.p1k chr08 11 315 116443 116747 F 305 97.70 1363 reject_low 10 ALIGNMENT 0 Y12-11l07.p1k chr15 745 684 226773 226772 C 62 0.00 1363 accept 0 ALIGNMENT 0 Y12-11l07.p1k chr15 745 209 594619 594618 C 537 0.00 1363 reject_low 23 ALIGNMENT 0 Y12-11l07.p1k chr01 316 745 160575 160574 F 430 0.00 1363 reject_low 21 ALIGNMENT 0 Y12-11l07.p1k chr02 745 317 221040 221039 C 429 0.00 1363 reject_low 20 ALIGNMENT 0 Y12-11l07.p1k chr13 745 316 189753 189752 C 430 0.00 1363 reject_low 13 ALIGNMENT 888 Y12-11l07.q1k chr15 33 1049 223622 224641 F 1017 97.15 1293 accept 0 ALIGNMENT 0 Y12-11l07.p1k chr15 745 316 600404 600403 C 430 0.00 1363 reject_low 6 ALIGNMENT 0 Y12-11l07.p1k chr02 745 317 259576 259575 C 429 0.00 1363 reject_low 7 ALIGNMENT 0 Y12-11l07.p1k chr02 745 316 265162 265161 C 430 0.00 1363 reject_low 9 ALIGNMENT 171 Y12-11l07.p1k chr01 11 315 165854 166163 F 305 88.20 1363 reject_low 22 ALIGNMENT 263 Y12-11l07.p1k chr07 316 11 535214 535519 C 306 97.71 1363 reject_low 8 ALIGNMENT 0 Y12-11l07.p1k chr14 895 62 96610 96609 C 834 0.00 1363 reject_low 1 ALIGNMENT 265 Y12-11l07.p1k chr15 315 11 600403 600707 C 305 98.03 1363 reject_low 6 ALIGNMENT 0 Y12-11l08.p1k chr02 784 62 780429 780428 C 723 0.00 1328 reject_low 3 ALIGNMENT 23 Y12-11l08.p1k chr06 61 26 160559 160594 C 36 97.22 1328 reject_low 4 ALIGNMENT 977 Y12-11l08.p1k chr13 1188 15 43244 44421 C 1174 95.06 1328 accept 0 ALIGNMENT 26 Y12-11l08.p1k chr05 16 61 83151 83196 F 46 91.30 1328 reject_low 1 ALIGNMENT 998 Y12-11l08.q1k chr13 34 1281 39534 40791 F 1248 94.55 1372 accept 0 ALIGNMENT 25 Y12-11l08.p1k chr02 58 18 780332 780372 C 41 92.68 1328 reject_low 2 ALIGNMENT 23 Y12-11l08.p1k chr04 61 27 747495 747529 C 35 97.14 1328 reject_low 5 ALIGNMENT 0 Y12-11l08.p1k chr05 62 784 83196 83195 F 723 0.00 1328 reject_low 1 ALIGNMENT 0 Y12-11l08.p1k chr09 62 784 169491 169490 F 723 0.00 1328 reject_low 6 ALIGNMENT 23 Y12-11l08.p1k chr09 27 61 169457 169491 F 35 97.14 1328 reject_low 6 ALIGNMENT 24 Y12-11l08.p1k chr02 61 30 780428 780459 C 32 100.00 1328 reject_low 3 ALIGNMENT 0 Y12-11l08.p1k chr02 784 59 780333 780332 C 726 0.00 1328 reject_low 2 ALIGNMENT 0 Y12-11l08.p1k chr04 784 62 747496 747495 C 723 0.00 1328 reject_low 5 ALIGNMENT 0 Y12-11l08.p1k chr06 784 62 160560 160559 C 723 0.00 1328 reject_low 4 ALIGNMENT 985 Y12-11l10.q1k chr15 40 1241 922183 923401 F 1202 95.09 1334 accept 0 ALIGNMENT 921 Y12-11l10.p1k chr15 1060 14 926223 927287 C 1047 97.52 1290 accept 0 ALIGNMENT 376 Y12-11l11.p1k chr04 29 567 1163942 1164482 F 539 91.47 1321 reject_low 2 ALIGNMENT 978 Y12-11l11.p1k chr04 29 1281 1160593 1161853 F 1253 93.85 1321 accept 0 ALIGNMENT 0 Y12-11l11.p1k chr13 845 537 288262 288261 C 309 0.00 1321 reject_low 5 ALIGNMENT 0 Y12-11l11.p1k chr08 525 845 292406 292405 F 321 0.00 1321 reject_low 4 ALIGNMENT 399 Y12-11l11.p1k chr08 25 594 288073 288644 F 570 91.40 1321 reject_low 3 ALIGNMENT 0 Y12-11l11.p1k chr08 670 845 288722 288721 F 176 0.00 1321 reject_low 3 ALIGNMENT 0 Y12-11l11.p1k chr08 595 625 288645 288678 F 31 0.00 1321 reject_low 3 ALIGNMENT 922 Y12-11l11.q1k chr04 1143 36 1165585 1166703 C 1108 95.67 1336 accept 0 ALIGNMENT 245 Y12-11l11.p1k chr08 29 524 291909 292406 F 496 84.68 1321 reject_low 4 ALIGNMENT 0 Y12-11l11.p1k chr04 568 845 1164482 1164481 F 278 0.00 1321 reject_low 2 ALIGNMENT 132 Y12-11l11.p1k chr13 536 40 288261 288758 C 497 77.26 1321 reject_low 5 ALIGNMENT 22 Y12-11l11.p1k chr08 626 669 288679 288722 F 44 86.36 1321 reject_low 3 ALIGNMENT 664 Y12-11l11.p1k chr04 29 845 1155201 1156017 F 817 94.86 1321 reject_low 1 ALIGNMENT 599 Y12-11l12.p1k chr04 1000 2 575554 576556 C 999 88.79 1229 accept 0 ALIGNMENT 953 Y12-11l13.p1k chr14 11 1110 253701 254796 F 1100 96.27 1310 accept_chi 1 ALIGNMENT 169 Y12-11l13.p1k chr04 23 210 45721 45909 F 188 96.81 1310 reject_low 2 ALIGNMENT 1017 Y12-11l13.q1k chr11 1227 33 171326 172518 C 1195 95.73 1340 accept_chi 0 ALIGNMENT 0 Y12-11l13.p1k chr04 211 822 45909 45908 F 612 0.00 1310 reject_low 2 ALIGNMENT 924 Y12-11l14.p1k chr06 17 1158 222364 223497 F 1142 94.66 1280 accept 0 ALIGNMENT 990 Y12-11l14.q1k chr06 1142 39 227367 228471 C 1104 97.19 1340 accept 0 ALIGNMENT 953 Y12-11l15.q1k chr04 27 1114 150096 151198 F 1088 96.88 1285 accept 0 ALIGNMENT 893 Y12-11l16.p1k chr12 1182 12 208114 209286 C 1171 94.11 1232 accept 0 ALIGNMENT 971 Y12-11l16.q1k chr12 31 1253 205394 206630 F 1223 94.52 1321 accept 0 ALIGNMENT 1017 Y12-11l17.p1k chr12 9 1300 464346 465646 F 1292 94.27 1300 accept 1 ALIGNMENT 859 Y12-11l17.q1k chr12 1076 37 467166 468201 C 1040 95.87 1295 accept 1 ALIGNMENT 859 Y12-11l17.q1k chr12 1076 37 458029 459064 C 1040 95.87 1295 accept 0 ALIGNMENT 1017 Y12-11l17.p1k chr12 9 1300 455209 456509 F 1292 94.27 1300 accept 0 ALIGNMENT 353 Y12-11l18.p1k chr08 489 1137 11795 12437 F 649 86.75 1288 reject_low 13 ALIGNMENT 848 Y12-11l18.p1k chr12 30 1225 12489 13676 F 1196 91.39 1288 reject_low 2 ALIGNMENT 0 Y12-11l18.p1k chr05 613 62 64107 64106 C 552 0.00 1288 reject_low 19 ALIGNMENT 810 Y12-11l18.p1k chr11 23 1150 1202 2340 F 1128 91.22 1288 reject_low 9 ALIGNMENT 0 Y12-11l18.p1k chr12 641 62 95106 95105 C 580 0.00 1288 reject_low 22 ALIGNMENT 0 Y12-11l18.p1k chr15 62 124 11050 11049 F 63 0.00 1288 reject_low 11 ALIGNMENT 266 Y12-11l18.p1k chr13 1102 229 922530 923414 C 874 78.72 1288 reject_low 18 ALIGNMENT 0 Y12-11l18.p1k chr02 503 62 809535 809534 C 442 0.00 1288 reject_low 15 ALIGNMENT 0 Y12-11l18.p1k chr03 485 62 308310 308309 C 424 0.00 1288 reject_low 12 ALIGNMENT 400 Y12-11l18.p1k chr07 533 1150 6195 6810 F 618 89.00 1288 accept 0 ALIGNMENT 355 Y12-11l18.p1k chr02 1092 504 808951 809534 C 589 87.78 1288 reject_low 15 ALIGNMENT 0 Y12-11l18.p1k chr07 503 62 1080791 1080790 C 442 0.00 1288 reject_low 14 ALIGNMENT 144 Y12-11l18.q1k chr09 240 583 430454 430801 F 344 81.69 1331 reject_low 1 ALIGNMENT 26 Y12-11l18.p1k chr12 1000 945 94738 94793 C 56 82.14 1288 reject_low 22 ALIGNMENT 849 Y12-11l18.p1k chr01 23 1103 1198 2280 F 1081 93.71 1288 reject_low 8 ALIGNMENT 977 Y12-11l18.q1k chr07 1202 36 8964 10128 C 1167 96.06 1331 accept 0 ALIGNMENT 0 Y12-11l18.p1k chr01 62 627 176651 176650 F 566 0.00 1288 reject_low 20 ALIGNMENT 876 Y12-11l18.p1k chr09 23 1137 8181 9300 F 1115 93.63 1288 reject_low 5 ALIGNMENT 0 Y12-11l18.p1k chr12 944 933 94794 94814 C 12 0.00 1288 reject_low 22 ALIGNMENT 272 Y12-11l18.p1k chr15 1137 229 1082689 1083610 C 909 78.66 1288 reject_low 16 ALIGNMENT 48 Y12-11l18.p1k chr03 908 822 290108 290193 C 87 85.06 1288 reject_low 21 ALIGNMENT 841 Y12-11l18.p1k chr12 1225 23 1062686 1063880 C 1203 91.11 1288 reject_low 3 ALIGNMENT 271 Y12-11l18.p1k chr16 229 1137 7531 8452 F 909 78.55 1288 reject_low 17 ALIGNMENT 174 Y12-11l18.p1k chr12 932 642 94815 95105 C 291 86.60 1288 reject_low 22 ALIGNMENT 795 Y12-11l18.p1k chr04 1026 23 1523198 1524210 C 1004 93.73 1288 reject_low 10 ALIGNMENT 846 Y12-11l18.p1k chr14 1150 30 781759 782874 C 1121 92.77 1288 reject_low 7 ALIGNMENT 362 Y12-11l18.p1k chr07 1092 504 1080212 1080790 C 589 88.46 1288 reject_low 14 ALIGNMENT 0 Y12-11l18.p1k chr03 821 62 290194 290193 C 760 0.00 1288 reject_low 21 ALIGNMENT 0 Y12-11l18.p1k chr15 228 62 1083611 1083610 C 167 0.00 1288 reject_low 16 ALIGNMENT 199 Y12-11l18.p1k chr01 628 1000 176651 177029 F 373 84.72 1288 reject_low 20 ALIGNMENT 710 Y12-11l18.p1k chr15 125 1137 11050 12055 F 1013 90.92 1288 reject_low 11 ALIGNMENT 0 Y12-11l18.p1k chr07 62 532 6195 6194 F 471 0.00 1288 accept 0 ALIGNMENT 830 Y12-11l18.p1k chr02 30 1225 7012 8199 F 1196 90.97 1288 reject_low 4 ALIGNMENT 0 Y12-11l18.p1k chr16 62 228 7531 7530 F 167 0.00 1288 reject_low 17 ALIGNMENT 0 Y12-11l18.q1k chr09 584 827 430801 430800 F 244 0.00 1331 reject_low 1 ALIGNMENT 0 Y12-11l18.p1k chr13 228 62 923415 923414 C 167 0.00 1288 reject_low 18 ALIGNMENT 873 Y12-11l18.p1k chr10 23 1137 8164 9283 F 1115 93.54 1288 reject_low 6 ALIGNMENT 312 Y12-11l18.p1k chr05 1031 614 63693 64106 C 418 92.11 1288 reject_low 19 ALIGNMENT 0 Y12-11l18.q1k chr09 62 239 430454 430453 F 178 0.00 1331 reject_low 1 ALIGNMENT 287 Y12-11l18.p1k chr03 1225 486 307566 308309 C 740 81.22 1288 reject_low 12 ALIGNMENT 0 Y12-11l18.p1k chr08 62 488 11795 11794 F 427 0.00 1288 reject_low 13 ALIGNMENT 930 Y12-11l20.q1k chr07 1144 35 397290 398393 C 1110 95.68 1311 accept 0 ALIGNMENT 987 Y12-11l20.p1k chr07 28 1233 394910 396129 F 1206 95.02 1252 accept 0 ALIGNMENT 1061 Y12-11l21.p1k chr04 9 1255 729245 730495 F 1247 96.39 1284 accept 0 ALIGNMENT 1030 Y12-11l21.q1k chr04 1254 29 733073 734295 C 1226 96.08 1263 accept 0 ALIGNMENT 1009 Y12-11l22.p1k chr16 1250 14 223362 224595 C 1237 95.55 1280 accept 0 ALIGNMENT 961 Y12-11l22.q1k chr16 34 1240 219930 221121 F 1207 95.19 1270 accept 0 ALIGNMENT 1032 Y12-11l24.q1k chr10 37 1219 598011 599183 F 1183 96.70 1247 reject_bad_break 0 ALIGNMENT 926 Y12-11l24.p1k chr10 1146 77 603305 604355 C 1070 97.20 1281 reject_bad_break 0 ALIGNMENT 53 Y12-11l24.p1k chr10 76 19 604377 604434 C 58 100.00 1281 reject_bad_break 0 ALIGNMENT 0 Y12-11l24.p1k chr10 76 77 604356 604376 C 0 0.00 1281 reject_bad_break 0 ALIGNMENT 0 Y12-11m01.q1k chr02 111 62 236891 236890 C 50 0.00 1270 reject_low 1 ALIGNMENT 994 Y12-11m01.q1k chr04 31 1144 914230 915352 F 1114 97.40 1270 accept 0 ALIGNMENT 0 Y12-11m01.q1k chr02 804 496 236508 236507 C 309 0.00 1270 reject_low 1 ALIGNMENT 925 Y12-11m01.p1k chr04 1136 31 917890 918991 C 1106 96.11 1214 accept 0 ALIGNMENT 248 Y12-11m01.q1k chr02 495 112 236507 236890 C 384 88.80 1270 reject_low 1 ALIGNMENT 878 Y12-11m02.p1k chr16 1058 21 570158 571182 C 1038 96.92 1232 accept 0 ALIGNMENT 982 Y12-11m02.q1k chr16 28 1248 566252 567477 F 1221 94.68 1281 accept 0 ALIGNMENT 655 Y12-11m03.q1k chr12 402 1181 489754 490540 F 780 95.26 1281 reject_low 2 ALIGNMENT 982 Y12-11m03.q1k chr12 34 1252 460536 461788 F 1219 94.59 1281 accept 0 ALIGNMENT 964 Y12-11m03.q1k chr12 54 1252 451419 452651 F 1199 94.50 1281 reject_low 1 ALIGNMENT 0 Y12-11m03.q1k chr12 62 401 489754 489753 F 340 0.00 1281 reject_low 2 ALIGNMENT 934 Y12-11m03.p1k chr12 1020 13 456591 457593 C 1008 98.41 1289 reject_low 1 ALIGNMENT 934 Y12-11m03.p1k chr12 1020 13 465728 466730 C 1008 98.41 1289 accept 0 ALIGNMENT 179 Y12-11m04.p1k chr08 17 215 146466 146664 F 199 97.99 1200 reject_low 8 ALIGNMENT 975 Y12-11m04.q1k chr13 31 1171 833648 834791 F 1141 96.23 1288 accept 0 ALIGNMENT 182 Y12-11m04.p1k chr16 215 17 769317 769515 C 199 98.49 1200 reject_low 5 ALIGNMENT 0 Y12-11m04.p1k chr01 876 216 182615 182614 C 661 0.00 1200 reject_low 16 ALIGNMENT 0 Y12-11m04.p1k chr07 554 62 405149 405148 C 493 0.00 1200 reject_low 23 ALIGNMENT 0 Y12-11m04.p1k chr16 876 216 769318 769317 C 661 0.00 1200 reject_low 5 ALIGNMENT 185 Y12-11m04.p1k chr15 215 17 854273 854471 C 199 98.99 1200 reject_low 3 ALIGNMENT 161 Y12-11m04.p1k chr14 215 17 726235 726433 C 199 94.97 1200 reject_low 20 ALIGNMENT 0 Y12-11m04.p1k chr01 876 582 183252 183251 C 295 0.00 1200 reject_low 2 ALIGNMENT 172 Y12-11m04.p1k chr03 217 17 168382 168582 C 201 96.52 1200 reject_low 10 ALIGNMENT 0 Y12-11m04.p1k chr03 644 876 143025 143024 F 233 0.00 1200 reject_low 4 ALIGNMENT 24 Y12-11m04.p1k chr07 605 555 405098 405148 C 51 86.27 1200 reject_low 23 ALIGNMENT 0 Y12-11m04.p1k chr09 876 217 210305 210304 C 660 0.00 1200 reject_low 13 ALIGNMENT 0 Y12-11m04.p1k chr16 582 876 856435 856434 F 295 0.00 1200 reject_low 22 ALIGNMENT 0 Y12-11m04.p1k chr05 216 373 434968 435127 F 158 0.00 1200 reject_low 24 ALIGNMENT 105 Y12-11m04.p1k chr03 374 643 124138 124410 F 270 83.33 1200 reject_low 1 ALIGNMENT 0 Y12-11m04.p1k chr07 216 876 319765 319764 F 661 0.00 1200 reject_low 19 ALIGNMENT 0 Y12-11m04.p1k chr14 876 216 546740 546739 C 661 0.00 1200 reject_low 18 ALIGNMENT 174 Y12-11m04.p1k chr11 17 215 202432 202629 F 199 97.49 1200 reject_low 17 ALIGNMENT 0 Y12-11m04.p1k chr03 62 425 142803 142802 F 364 0.00 1200 reject_low 4 ALIGNMENT 0 Y12-11m04.p1k chr02 876 216 197718 197717 C 661 0.00 1200 reject_low 14 ALIGNMENT 175 Y12-11m04.p1k chr09 216 17 205216 205414 C 200 97.50 1200 reject_low 12 ALIGNMENT 760 Y12-11m04.p1k chr13 1124 215 837003 837915 C 910 96.37 1200 accept 0 ALIGNMENT 93 Y12-11m04.p1k chr01 581 372 183251 183463 C 210 84.76 1200 reject_low 2 ALIGNMENT 0 Y12-11m04.p1k chr14 876 216 726236 726235 C 661 0.00 1200 reject_low 20 ALIGNMENT 0 Y12-11m04.p1k chr03 876 218 168383 168382 C 659 0.00 1200 reject_low 10 ALIGNMENT 21 Y12-11m04.p1k chr05 374 608 435128 435368 F 235 74.89 1200 reject_low 24 ALIGNMENT 179 Y12-11m04.p1k chr04 17 215 946091 946289 F 199 97.99 1200 reject_low 6 ALIGNMENT 175 Y12-11m04.p1k chr07 216 17 712209 712407 C 200 97.50 1200 reject_low 11 ALIGNMENT 174 Y12-11m04.p1k chr01 215 17 182614 182811 C 199 97.49 1200 reject_low 16 ALIGNMENT 175 Y12-11m04.p1k chr09 216 17 210304 210502 C 200 97.50 1200 reject_low 13 ALIGNMENT 0 Y12-11m04.p1k chr16 62 514 856362 856361 F 453 0.00 1200 reject_low 22 ALIGNMENT 171 Y12-11m04.p1k chr07 17 215 319568 319765 F 199 96.98 1200 reject_low 19 ALIGNMENT 174 Y12-11m04.p1k chr14 215 17 546739 546936 C 199 97.49 1200 reject_low 18 ALIGNMENT 179 Y12-11m04.p1k chr12 215 17 374000 374198 C 199 97.99 1200 reject_low 9 ALIGNMENT 0 Y12-11m04.p1k chr05 609 876 435368 435367 F 268 0.00 1200 reject_low 24 ALIGNMENT 0 Y12-11m04.p1k chr07 876 606 405099 405098 C 271 0.00 1200 reject_low 23 ALIGNMENT 0 Y12-11m04.p1k chr04 216 876 946289 946288 F 661 0.00 1200 reject_low 6 ALIGNMENT 179 Y12-11m04.p1k chr07 215 17 735987 736185 C 199 97.99 1200 reject_low 7 ALIGNMENT 0 Y12-11m04.p1k chr07 876 216 735988 735987 C 661 0.00 1200 reject_low 7 ALIGNMENT 0 Y12-11m04.p1k chr01 371 62 183464 183463 C 310 0.00 1200 reject_low 2 ALIGNMENT 173 Y12-11m04.p1k chr05 17 215 434769 434967 F 199 96.98 1200 reject_low 24 ALIGNMENT 0 Y12-11m04.p1k chr11 216 876 202629 202628 F 661 0.00 1200 reject_low 17 ALIGNMENT 0 Y12-11m04.p1k chr15 876 216 854274 854273 C 661 0.00 1200 reject_low 3 ALIGNMENT 0 Y12-11m04.p1k chr13 214 62 837916 837915 C 153 0.00 1200 accept 0 ALIGNMENT 0 Y12-11m04.p1k chr08 216 876 146664 146663 F 661 0.00 1200 reject_low 8 ALIGNMENT 0 Y12-11m04.p1k chr03 62 373 124138 124137 F 312 0.00 1200 reject_low 1 ALIGNMENT 31 Y12-11m04.p1k chr16 515 581 856362 856435 F 67 88.06 1200 reject_low 22 ALIGNMENT 175 Y12-11m04.p1k chr16 205 17 856551 856739 C 189 98.94 1200 reject_low 15 ALIGNMENT 0 Y12-11m04.p1k chr03 644 876 124410 124409 F 233 0.00 1200 reject_low 1 ALIGNMENT 176 Y12-11m04.p1k chr02 215 17 197717 197915 C 199 97.49 1200 reject_low 14 ALIGNMENT 137 Y12-11m04.p1k chr07 17 215 405263 405456 F 199 91.96 1200 reject_low 21 ALIGNMENT 0 Y12-11m04.p1k chr07 876 217 712210 712209 C 660 0.00 1200 reject_low 11 ALIGNMENT 73 Y12-11m04.p1k chr03 426 643 142803 143025 F 218 82.11 1200 reject_low 4 ALIGNMENT 0 Y12-11m04.p1k chr09 876 217 205217 205216 C 660 0.00 1200 reject_low 12 ALIGNMENT 0 Y12-11m04.p1k chr16 876 206 856552 856551 C 671 0.00 1200 reject_low 15 ALIGNMENT 0 Y12-11m04.p1k chr07 216 876 405456 405455 F 661 0.00 1200 reject_low 21 ALIGNMENT 0 Y12-11m04.p1k chr12 876 216 374001 374000 C 661 0.00 1200 reject_low 9 ALIGNMENT 952 Y12-11m05.q1k chr04 1203 30 1131534 1132716 C 1174 95.06 1334 accept 0 ALIGNMENT 605 Y12-11m05.p1k chr04 12 916 1129057 1129956 F 905 89.83 1551 accept 0 ALIGNMENT 0 Y12-11m07.p1k chr04 832 117 747496 747495 C 716 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-11m07.p1k chr02 832 117 780429 780428 C 716 0.00 1297 reject_low 3 ALIGNMENT 917 Y12-11m07.q1k chr13 33 1072 40064 41115 F 1040 97.40 1301 accept 0 ALIGNMENT 1034 Y12-11m07.p1k chr13 1273 17 43211 44474 C 1257 95.07 1297 accept 0 ALIGNMENT 28 Y12-11m07.p1k chr02 113 66 780332 780379 C 48 91.67 1297 reject_low 1 ALIGNMENT 0 Y12-11m07.p1k chr06 832 117 160560 160559 C 716 0.00 1297 reject_low 4 ALIGNMENT 0 Y12-11m07.p1k chr06 80 62 160595 160594 C 19 0.00 1297 reject_low 4 ALIGNMENT 27 Y12-11m07.p1k chr04 116 66 747495 747545 C 51 90.20 1297 reject_low 2 ALIGNMENT 23 Y12-11m07.p1k chr06 116 81 160559 160594 C 36 97.22 1297 reject_low 4 ALIGNMENT 0 Y12-11m07.p1k chr02 84 62 780460 780459 C 23 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-11m07.p1k chr02 832 114 780333 780332 C 719 0.00 1297 reject_low 1 ALIGNMENT 24 Y12-11m07.p1k chr02 116 85 780428 780459 C 32 100.00 1297 reject_low 3 ALIGNMENT 973 Y12-11m08.p1k chr16 16 1189 273366 274526 F 1174 96.25 1289 accept 0 ALIGNMENT 854 Y12-11m08.q1k chr16 1034 34 276926 277940 C 1001 97.00 1277 accept 0 ALIGNMENT 382 Y12-11m10.p1k chr10 765 2 233973 234717 C 764 86.26 1276 accept 0 ALIGNMENT 951 Y12-11m11.q1k chr08 1182 38 113987 115153 C 1145 95.55 1312 accept 0 ALIGNMENT 1033 Y12-11m11.p1k chr08 25 1181 110362 111522 F 1157 97.23 1320 accept 0 ALIGNMENT 741 Y12-11m12.p1k chr05 1222 12 263144 264329 C 1211 89.43 1355 accept 0 ALIGNMENT 490 Y12-11m12.q1k chr05 36 930 259835 260707 F 895 87.26 1366 accept 0 ALIGNMENT 998 Y12-11m13.q1k chr13 29 1261 207966 209204 F 1233 94.16 1315 accept 0 ALIGNMENT 1005 Y12-11m13.p1k chr13 1189 21 212101 213287 C 1169 96.49 1316 accept 0 ALIGNMENT 897 Y12-11m14.q1k chr16 1108 29 489909 491013 C 1080 95.93 1261 accept 0 ALIGNMENT 1013 Y12-11m14.p1k chr16 13 1192 485958 487136 F 1180 96.95 1327 accept 0 ALIGNMENT 805 Y12-11m15.q1k chr12 995 27 352505 353460 C 969 96.59 1376 accept 0 ALIGNMENT 973 Y12-11m15.p1k chr12 23 1189 349149 350305 F 1167 95.89 1357 accept 0 ALIGNMENT 0 Y12-11m16.p1k chr13 62 176 184173 184172 F 115 0.00 1291 reject_low 16 ALIGNMENT 176 Y12-11m16.p1k chr15 172 476 117700 118017 F 305 87.87 1291 reject_low 20 ALIGNMENT 0 Y12-11m16.p1k chr10 176 62 204033 204032 C 115 0.00 1291 reject_low 30 ALIGNMENT 174 Y12-11m16.p1k chr04 177 498 1095765 1096099 F 322 86.65 1291 reject_low 21 ALIGNMENT 0 Y12-11m16.p1k chr07 903 499 822981 822980 C 405 0.00 1291 reject_low 11 ALIGNMENT 736 Y12-11m16.p1k chr10 228 1233 204036 205061 F 1006 92.74 1291 accept 0 ALIGNMENT 0 Y12-11m16.p1k chr15 903 499 980256 980255 C 405 0.00 1291 reject_low 5 ALIGNMENT 0 Y12-11m16.p1k chr03 176 62 124460 124459 C 115 0.00 1291 reject_low 6 ALIGNMENT 0 Y12-11m16.p1k chr12 903 499 92050 92049 C 405 0.00 1291 reject_low 9 ALIGNMENT 0 Y12-11m16.p1k chr15 499 903 595152 595151 F 405 0.00 1291 reject_low 12 ALIGNMENT 203 Y12-11m16.p1k chr15 177 498 600406 600734 F 322 89.44 1291 reject_low 13 ALIGNMENT 0 Y12-11m16.p1k chr12 170 62 92384 92383 C 109 0.00 1291 reject_low 9 ALIGNMENT 0 Y12-11m16.p1k chr02 62 176 221043 221042 F 115 0.00 1291 reject_low 17 ALIGNMENT 209 Y12-11m16.p1k chr14 498 177 96610 96938 C 322 90.06 1291 reject_low 7 ALIGNMENT 0 Y12-11m16.p1k chr01 903 499 165828 165827 C 405 0.00 1291 reject_low 14 ALIGNMENT 0 Y12-11m16.p1k chr13 477 903 184479 184478 F 427 0.00 1291 reject_low 16 ALIGNMENT 0 Y12-11m16.p1k chr03 489 903 151838 151837 F 415 0.00 1291 reject_low 19 ALIGNMENT 0 Y12-11m16.p1k chr15 62 171 117700 117699 F 110 0.00 1291 reject_low 20 ALIGNMENT 0 Y12-11m16.p1k chr15 499 903 600734 600733 F 405 0.00 1291 reject_low 13 ALIGNMENT 0 Y12-11m16.p1k chr14 499 903 519497 519496 F 405 0.00 1291 reject_low 25 ALIGNMENT 99 Y12-11m16.p1k chr14 177 498 519167 519497 F 322 79.19 1291 reject_low 25 ALIGNMENT 0 Y12-11m16.p1k chr10 903 489 354771 354770 C 415 0.00 1291 reject_low 31 ALIGNMENT 0 Y12-11m16.p1k chr04 499 903 1096099 1096098 F 405 0.00 1291 reject_low 21 ALIGNMENT 0 Y12-11m16.p1k chr01 162 62 166175 166174 C 101 0.00 1291 reject_low 14 ALIGNMENT 0 Y12-11m16.p1k chr15 62 176 594824 594823 F 115 0.00 1291 reject_low 12 ALIGNMENT 0 Y12-11m16.p1k chr10 374 62 354882 354881 C 313 0.00 1291 reject_low 31 ALIGNMENT 206 Y12-11m16.p1k chr13 498 177 362586 362914 C 322 89.75 1291 reject_low 8 ALIGNMENT 42 Y12-11m16.p1k chr07 375 485 817289 817397 F 111 81.98 1291 reject_low 33 ALIGNMENT 0 Y12-11m16.p1k chr15 477 903 118017 118016 F 427 0.00 1291 reject_low 20 ALIGNMENT 0 Y12-11m16.p1k chr02 508 903 265502 265501 F 396 0.00 1291 reject_low 3 ALIGNMENT 0 Y12-11m16.p1k chr13 176 62 362915 362914 C 115 0.00 1291 reject_low 8 ALIGNMENT 0 Y12-11m16.p1k chr15 172 62 980588 980587 C 111 0.00 1291 reject_low 5 ALIGNMENT 33 Y12-11m16.p1k chr15 372 416 594717 594761 F 45 91.11 1291 reject_low 32 ALIGNMENT 149 Y12-11m16.p1k chr01 498 163 165827 166174 C 336 83.33 1291 reject_low 14 ALIGNMENT 203 Y12-11m16.p1k chr07 498 177 822980 823308 C 322 89.44 1291 reject_low 11 ALIGNMENT 200 Y12-11m16.p1k chr08 498 177 543610 543938 C 322 89.13 1291 reject_low 15 ALIGNMENT 0 Y12-11m16.p1k chr08 176 62 543939 543938 C 115 0.00 1291 reject_low 15 ALIGNMENT 0 Y12-11m16.p1k chr08 903 499 543611 543610 C 405 0.00 1291 reject_low 15 ALIGNMENT 0 Y12-11m16.p1k chr04 62 176 1095765 1095764 F 115 0.00 1291 reject_low 21 ALIGNMENT 0 Y12-11m16.p1k chr03 903 501 124130 124129 C 403 0.00 1291 reject_low 6 ALIGNMENT 0 Y12-11m16.p1k chr03 903 499 168596 168595 C 405 0.00 1291 reject_low 1 ALIGNMENT 202 Y12-11m16.p1k chr02 177 507 265164 265502 F 331 88.82 1291 reject_low 3 ALIGNMENT 0 Y12-11m16.p1k chr06 62 175 137657 137656 F 114 0.00 1291 reject_low 24 ALIGNMENT 48 Y12-11m16.p1k chr10 488 375 354770 354881 C 114 83.33 1291 reject_low 31 ALIGNMENT 122 Y12-11m16.p1k chr06 176 432 137657 137907 F 257 85.99 1291 reject_low 24 ALIGNMENT 73 Y12-11m16.p1k chr06 177 488 137911 138229 F 312 77.56 1291 reject_low 27 ALIGNMENT 0 Y12-11m16.p1k chr02 482 903 221356 221355 F 422 0.00 1291 reject_low 17 ALIGNMENT 0 Y12-11m16.p1k chr10 903 331 203879 203878 C 573 0.00 1291 reject_low 30 ALIGNMENT 0 Y12-11m16.p1k chr15 417 903 594761 594760 F 487 0.00 1291 reject_low 32 ALIGNMENT 0 Y12-11m16.p1k chr06 433 903 137907 137906 F 471 0.00 1291 reject_low 24 ALIGNMENT 0 Y12-11m16.p1k chr03 62 176 151521 151520 F 115 0.00 1291 reject_low 19 ALIGNMENT 190 Y12-11m16.p1k chr12 498 171 92049 92383 C 328 87.80 1291 reject_low 9 ALIGNMENT 0 Y12-11m16.p1k chr10 196 62 354760 354759 C 135 0.00 1291 reject_low 18 ALIGNMENT 0 Y12-11m16.p1k chr10 903 490 354460 354459 C 414 0.00 1291 reject_low 18 ALIGNMENT 210 Y12-11m16.p1k chr15 498 173 980255 980587 C 326 89.88 1291 reject_low 5 ALIGNMENT 0 Y12-11m16.p1k chr15 62 371 594717 594716 F 310 0.00 1291 reject_low 32 ALIGNMENT 193 Y12-11m16.p1k chr02 177 481 221043 221356 F 305 89.84 1291 reject_low 17 ALIGNMENT 0 Y12-11m16.p1k chr15 62 176 600406 600405 F 115 0.00 1291 reject_low 13 ALIGNMENT 0 Y12-11m16.p1k chr06 62 176 137911 137910 F 115 0.00 1291 reject_low 27 ALIGNMENT 73 Y12-11m16.p1k chr06 177 488 143538 143856 F 312 77.56 1291 reject_low 28 ALIGNMENT 0 Y12-11m16.p1k chr07 903 504 817394 817393 C 400 0.00 1291 reject_low 4 ALIGNMENT 57 Y12-11m16.p1k chr10 330 177 203878 204032 C 154 81.17 1291 reject_low 30 ALIGNMENT 0 Y12-11m16.p1k chr14 499 903 525063 525062 F 405 0.00 1291 reject_low 26 ALIGNMENT 0 Y12-11m16.p1k chr14 903 499 96611 96610 C 405 0.00 1291 reject_low 7 ALIGNMENT 976 Y12-11m16.q1k chr10 1211 34 209094 210270 C 1178 95.50 1315 accept 0 ALIGNMENT 199 Y12-11m16.p1k chr13 177 476 184173 184479 F 300 90.67 1291 reject_low 16 ALIGNMENT 203 Y12-11m16.p1k chr15 177 498 594824 595152 F 322 89.44 1291 reject_low 12 ALIGNMENT 148 Y12-11m16.p1k chr03 441 177 142803 143074 C 265 87.55 1291 reject_low 23 ALIGNMENT 187 Y12-11m16.p1k chr03 177 488 151521 151838 F 312 88.78 1291 reject_low 19 ALIGNMENT 0 Y12-11m16.p1k chr04 499 903 1175639 1175638 F 405 0.00 1291 reject_low 10 ALIGNMENT 0 Y12-11m16.p1k chr07 176 62 823309 823308 C 115 0.00 1291 reject_low 11 ALIGNMENT 0 Y12-11m16.p1k chr06 489 903 143856 143855 F 415 0.00 1291 reject_low 28 ALIGNMENT 207 Y12-11m16.p1k chr07 503 177 817393 817726 C 327 89.60 1291 reject_low 4 ALIGNMENT 150 Y12-11m16.p1k chr01 500 177 160237 160572 C 324 83.95 1291 reject_low 22 ALIGNMENT 0 Y12-11m16.p1k chr13 903 499 362587 362586 C 405 0.00 1291 reject_low 8 ALIGNMENT 0 Y12-11m16.p1k chr02 62 176 265164 265163 F 115 0.00 1291 reject_low 3 ALIGNMENT 0 Y12-11m16.p1k chr07 331 374 817237 817288 F 44 0.00 1291 reject_low 33 ALIGNMENT 0 Y12-11m16.p1k chr03 62 224 149531 149530 F 163 0.00 1291 reject_low 29 ALIGNMENT 0 Y12-11m16.p1k chr14 62 176 524733 524732 F 115 0.00 1291 reject_low 26 ALIGNMENT 0 Y12-11m16.p1k chr07 486 903 817397 817396 F 418 0.00 1291 reject_low 33 ALIGNMENT 132 Y12-11m16.p1k chr03 498 49 168595 169042 C 450 79.56 1291 reject_low 1 ALIGNMENT 0 Y12-11m16.p1k chr01 176 62 160573 160572 C 115 0.00 1291 reject_low 22 ALIGNMENT 0 Y12-11m16.p1k chr14 176 62 96939 96938 C 115 0.00 1291 reject_low 7 ALIGNMENT 0 Y12-11m16.p1k chr10 62 227 204036 204035 F 166 0.00 1291 accept 0 ALIGNMENT 0 Y12-11m16.p1k chr03 176 62 143075 143074 C 115 0.00 1291 reject_low 23 ALIGNMENT 0 Y12-11m16.p1k chr06 489 903 138229 138228 F 415 0.00 1291 reject_low 27 ALIGNMENT 0 Y12-11m16.p1k chr01 903 501 160238 160237 C 403 0.00 1291 reject_low 22 ALIGNMENT 192 Y12-11m16.p1k chr10 489 197 354459 354759 C 293 90.44 1291 reject_low 18 ALIGNMENT 99 Y12-11m16.p1k chr14 177 498 524733 525063 F 322 79.19 1291 reject_low 26 ALIGNMENT 0 Y12-11m16.p1k chr06 62 176 143538 143537 F 115 0.00 1291 reject_low 28 ALIGNMENT 22 Y12-11m16.p1k chr07 300 330 817205 817236 F 31 96.77 1291 reject_low 33 ALIGNMENT 0 Y12-11m16.p1k chr14 62 176 519167 519166 F 115 0.00 1291 reject_low 25 ALIGNMENT 0 Y12-11m16.p1k chr03 477 903 149785 149784 F 427 0.00 1291 reject_low 29 ALIGNMENT 0 Y12-11m16.p1k chr04 62 172 1175307 1175306 F 111 0.00 1291 reject_low 10 ALIGNMENT 196 Y12-11m16.p1k chr04 173 498 1175307 1175639 F 326 88.34 1291 reject_low 10 ALIGNMENT 0 Y12-11m16.p1k chr03 903 442 142804 142803 C 462 0.00 1291 reject_low 23 ALIGNMENT 0 Y12-11m16.p1k chr07 62 299 817205 817204 F 238 0.00 1291 reject_low 33 ALIGNMENT 0 Y12-11m16.p1k chr07 176 62 817727 817726 C 115 0.00 1291 reject_low 4 ALIGNMENT 207 Y12-11m16.p1k chr03 500 177 124129 124459 C 324 89.81 1291 reject_low 6 ALIGNMENT 69 Y12-11m16.p1k chr14 919 849 519093 519163 C 71 98.59 1291 reject_low 2 ALIGNMENT 0 Y12-11m16.p1k chr14 848 62 519164 519163 C 787 0.00 1291 reject_low 2 ALIGNMENT 71 Y12-11m16.p1k chr03 225 476 149531 149785 F 252 79.37 1291 reject_low 29 ALIGNMENT 981 Y12-11m17.p1k chr07 1164 18 17470 18624 C 1147 97.12 1294 accept 0 ALIGNMENT 1064 Y12-11m17.q1k chr07 30 1242 12754 13972 F 1213 96.95 1296 accept 0 ALIGNMENT 1011 Y12-11m18.q1k chr04 35 1234 1055994 1057189 F 1200 95.83 1295 accept 0 ALIGNMENT 1034 Y12-11m18.p1k chr04 1288 13 1060695 1061968 C 1276 95.06 1294 accept 0 ALIGNMENT 710 Y12-11m19.p1k chr12 792 21 451419 452188 C 772 98.32 1289 reject_low 2 ALIGNMENT 377 Y12-11m19.p1k chr12 422 21 489754 490156 C 402 98.26 1289 reject_low 3 ALIGNMENT 945 Y12-11m19.q1k chr12 35 1191 466080 467257 F 1157 94.81 1286 reject_low 1 ALIGNMENT 945 Y12-11m19.q1k chr12 35 1191 456943 458120 F 1157 94.81 1286 accept 0 ALIGNMENT 0 Y12-11m19.p1k chr12 799 423 489755 489754 C 377 0.00 1289 reject_low 3 ALIGNMENT 884 Y12-11m19.p1k chr12 1111 21 460217 461325 C 1091 95.05 1289 accept 0 ALIGNMENT 1012 Y12-11m20.p1k chr14 1265 15 671926 673174 C 1251 95.28 1265 accept 0 ALIGNMENT 966 Y12-11m20.q1k chr14 32 1229 668957 670143 F 1198 95.16 1304 accept 0 ALIGNMENT 1005 Y12-11m21.q1k chr15 26 1248 697298 698527 F 1223 95.50 1250 accept 0 ALIGNMENT 1006 Y12-11m21.p1k chr15 1192 18 700409 701599 C 1175 96.00 1297 accept 0 ALIGNMENT 1004 Y12-11m22.q1k chr16 1240 37 541318 542527 C 1204 95.27 1261 accept 0 ALIGNMENT 982 Y12-11m22.p1k chr16 23 1215 536976 538146 F 1193 96.65 1300 accept 0 ALIGNMENT 1053 Y12-11m23.p1k chr15 17 1226 508530 509745 F 1210 96.20 1243 accept 0 ALIGNMENT 1007 Y12-11m23.q1k chr15 1232 34 512475 513654 C 1199 96.25 1257 accept 0 ALIGNMENT 930 Y12-11m24.q1k chr08 1149 36 472427 473555 C 1114 96.50 1216 accept 0 ALIGNMENT 1004 Y12-11m24.p1k chr08 15 1182 468137 469307 F 1168 96.32 1239 accept 0 ALIGNMENT 0 Y12-11n01.p1k chr05 823 852 34077 34108 F 30 0.00 1242 accept 0 ALIGNMENT 864 Y12-11n01.q1k chr05 1095 35 37229 38303 C 1061 96.04 1266 accept 0 ALIGNMENT 530 Y12-11n01.p1k chr05 26 822 33288 34076 F 797 90.21 1242 accept 0 ALIGNMENT 25 Y12-11n01.p1k chr05 853 977 34109 34228 F 125 76.80 1242 accept 0 ALIGNMENT 612 Y12-11n02.p1k chr06 912 1 251197 252092 C 912 90.35 1326 accept 0 ALIGNMENT 1033 Y12-11n03.q1k chr16 28 1235 542378 543599 F 1208 96.11 1267 accept 0 ALIGNMENT 1045 Y12-11n03.p1k chr16 1199 16 545156 546344 C 1184 96.79 1218 accept 0 ALIGNMENT 851 Y12-11n05.p1k chr12 997 15 697625 698614 C 983 96.64 1428 accept 0 ALIGNMENT 891 Y12-11n05.q1k chr12 33 1108 693494 694583 F 1076 95.35 1286 accept 0 ALIGNMENT 926 Y12-11n08.p1k chr14 12 1072 728537 729591 F 1061 96.80 1334 accept 0 ALIGNMENT 961 Y12-11n08.q1k chr14 1210 30 731839 733021 C 1181 94.92 1356 accept 0 ALIGNMENT 866 Y12-11n09.p1k chr02 1084 8 691240 692311 C 1077 95.17 1290 accept_chi 1 ALIGNMENT 883 Y12-11n09.q1k chr13 1091 39 696540 697604 C 1053 94.59 1305 accept_chi 0 ALIGNMENT 0 Y12-11n10.q1k chr04 62 712 1023129 1023128 F 651 0.00 1286 reject_low 18 ALIGNMENT 0 Y12-11n10.q1k chr07 62 709 401614 401613 F 648 0.00 1286 reject_low 20 ALIGNMENT 243 Y12-11n10.q1k chr14 715 1040 546739 547075 F 326 93.56 1286 reject_low 9 ALIGNMENT 0 Y12-11n10.q1k chr09 62 708 205211 205210 F 647 0.00 1286 reject_low 5 ALIGNMENT 212 Y12-11n10.q1k chr14 715 1040 726235 726572 F 326 90.49 1286 reject_low 19 ALIGNMENT 0 Y12-11n10.q1k chr14 62 714 546739 546738 F 653 0.00 1286 reject_low 9 ALIGNMENT 155 Y12-11n10.q1k chr03 717 923 168386 168595 F 207 93.72 1286 reject_low 21 ALIGNMENT 0 Y12-11n10.q1k chr07 62 708 712204 712203 F 647 0.00 1286 reject_low 4 ALIGNMENT 249 Y12-11n10.q1k chr09 709 1040 205211 205553 F 332 93.67 1286 reject_low 5 ALIGNMENT 225 Y12-11n10.q1k chr07 1040 715 319429 319765 C 326 91.72 1286 reject_low 15 ALIGNMENT 0 Y12-11n10.q1k chr16 62 671 769274 769273 F 610 0.00 1286 reject_low 3 ALIGNMENT 224 Y12-11n10.q1k chr08 1040 715 146327 146664 C 326 91.72 1286 reject_low 16 ALIGNMENT 0 Y12-11n10.q1k chr07 635 62 405535 405534 C 574 0.00 1286 reject_low 11 ALIGNMENT 145 Y12-11n10.q1k chr07 942 636 405231 405534 C 307 85.02 1286 reject_low 11 ALIGNMENT 214 Y12-11n10.q1k chr12 711 1038 373996 374334 F 328 90.85 1286 reject_low 17 ALIGNMENT 84 Y12-11n10.q1k chr03 617 703 151272 151358 F 87 98.85 1286 reject_low 2 ALIGNMENT 0 Y12-11n10.q1k chr08 714 62 146665 146664 C 653 0.00 1286 reject_low 16 ALIGNMENT 642 Y12-11n10.q1k chr05 38 715 134840 135514 F 678 99.26 1286 accept 0 ALIGNMENT 213 Y12-11n10.q1k chr04 713 1040 1023129 1023468 F 328 90.55 1286 reject_low 18 ALIGNMENT 227 Y12-11n10.q1k chr04 1040 715 945952 946289 C 326 92.02 1286 reject_low 13 ALIGNMENT 0 Y12-11n10.q1k chr03 62 616 151272 151271 F 555 0.00 1286 reject_low 2 ALIGNMENT 944 Y12-11n10.p1k chr05 1243 18 138762 139984 C 1226 94.29 1244 accept 0 ALIGNMENT 0 Y12-11n10.q1k chr14 62 714 726235 726234 F 653 0.00 1286 reject_low 19 ALIGNMENT 0 Y12-11n10.q1k chr01 62 714 182614 182613 F 653 0.00 1286 reject_low 8 ALIGNMENT 0 Y12-11n10.q1k chr04 714 62 946290 946289 C 653 0.00 1286 reject_low 13 ALIGNMENT 0 Y12-11n10.q1k chr15 62 709 854268 854267 F 648 0.00 1286 reject_low 10 ALIGNMENT 249 Y12-11n10.q1k chr07 709 1040 712204 712546 F 332 93.67 1286 reject_low 4 ALIGNMENT 249 Y12-11n10.q1k chr09 709 1040 210299 210641 F 332 93.67 1286 reject_low 6 ALIGNMENT 0 Y12-11n10.q1k chr07 714 62 319766 319765 C 653 0.00 1286 reject_low 15 ALIGNMENT 0 Y12-11n10.q1k chr11 617 62 202726 202725 C 556 0.00 1286 reject_low 1 ALIGNMENT 227 Y12-11n10.q1k chr02 715 1040 197717 198054 F 326 92.02 1286 reject_low 12 ALIGNMENT 0 Y12-11n10.q1k chr03 704 792 151358 151357 F 89 0.00 1286 reject_low 2 ALIGNMENT 0 Y12-11n10.q1k chr02 62 714 197717 197716 F 653 0.00 1286 reject_low 12 ALIGNMENT 0 Y12-11n10.q1k chr09 62 708 210299 210298 F 647 0.00 1286 reject_low 6 ALIGNMENT 226 Y12-11n10.q1k chr16 725 1040 856551 856878 F 316 92.72 1286 reject_low 14 ALIGNMENT 0 Y12-11n10.q1k chr03 62 716 168386 168385 F 655 0.00 1286 reject_low 21 ALIGNMENT 246 Y12-11n10.q1k chr01 715 1040 182614 182950 F 326 93.87 1286 reject_low 8 ALIGNMENT 247 Y12-11n10.q1k chr07 710 1040 707194 707535 F 331 93.66 1286 reject_low 7 ALIGNMENT 208 Y12-11n10.q1k chr07 710 985 401614 401894 F 276 93.48 1286 reject_low 20 ALIGNMENT 318 Y12-11n10.q1k chr11 1040 618 202293 202725 C 423 93.38 1286 reject_low 1 ALIGNMENT 0 Y12-11n10.q1k chr16 62 724 856551 856550 F 663 0.00 1286 reject_low 14 ALIGNMENT 0 Y12-11n10.q1k chr05 716 792 135514 135513 F 77 0.00 1286 accept 0 ALIGNMENT 235 Y12-11n10.q1k chr15 710 1040 854268 854609 F 331 92.45 1286 reject_low 10 ALIGNMENT 229 Y12-11n10.q1k chr16 672 1040 769274 769654 F 369 89.16 1286 reject_low 3 ALIGNMENT 0 Y12-11n10.q1k chr07 62 709 707194 707193 F 648 0.00 1286 reject_low 7 ALIGNMENT 0 Y12-11n10.q1k chr12 62 710 373996 373995 F 649 0.00 1286 reject_low 17 ALIGNMENT 678 Y12-11n11.q1k chr15 1029 29 640164 641151 C 1001 91.31 1391 accept 0 ALIGNMENT 438 Y12-11n12.q1k chr08 37 637 179737 180353 F 601 91.85 1061 accept_chi 1 ALIGNMENT 1021 Y12-11n12.p1k chr09 1214 20 212341 213550 C 1195 96.32 1289 accept_chi 0 ALIGNMENT 595 Y12-11n13.p1k chrm 16 974 18361 19315 F 959 92.39 1372 accept 0 ALIGNMENT 976 Y12-11n14.q1k chr07 40 1240 532126 533353 F 1201 95.25 1313 accept 0 ALIGNMENT 984 Y12-11n14.p1k chr07 1206 18 543075 544259 C 1189 95.79 1302 accept 0 ALIGNMENT 1028 Y12-11n15.q1k chr12 1273 33 580479 581722 C 1241 95.08 1312 accept 0 ALIGNMENT 1037 Y12-11n15.p1k chr12 20 1246 577219 578456 F 1227 96.33 1296 accept 0 ALIGNMENT 23 Y12-11n16.q1k chr15 39 61 93822 93844 F 23 100.00 1301 reject_low 1 ALIGNMENT 74 Y12-11n16.q1k chr15 486 604 94284 94402 F 119 88.24 1301 reject_low 1 ALIGNMENT 1003 Y12-11n16.p1k chr14 1257 15 67407 68640 C 1243 95.09 1309 accept 0 ALIGNMENT 0 Y12-11n16.q1k chr15 605 866 94402 94401 F 262 0.00 1301 reject_low 1 ALIGNMENT 0 Y12-11n16.q1k chr15 62 485 93845 94283 F 424 0.00 1301 reject_low 1 ALIGNMENT 997 Y12-11n16.q1k chr14 39 1205 63998 65173 F 1167 96.32 1301 accept 0 ALIGNMENT 0 Y12-11n17.p1k chr16 62 421 212814 212813 F 360 0.00 1312 reject_low 7 ALIGNMENT 83 Y12-11n17.p1k chr04 112 195 519739 519822 F 84 100.00 1312 reject_low 6 ALIGNMENT 0 Y12-11n17.p1k chr04 62 111 519739 519738 F 50 0.00 1312 reject_low 6 ALIGNMENT 91 Y12-11n17.p1k chr11 110 204 84211 84305 F 95 98.95 1312 reject_low 1 ALIGNMENT 0 Y12-11n17.p1k chr11 62 109 84211 84210 F 48 0.00 1312 reject_low 1 ALIGNMENT 0 Y12-11n17.p1k chr14 110 62 726220 726219 C 49 0.00 1312 reject_low 3 ALIGNMENT 92 Y12-11n17.p1k chr02 111 204 9582 9675 F 94 100.00 1312 reject_low 2 ALIGNMENT 0 Y12-11n17.p1k chr02 205 667 9675 9674 F 463 0.00 1312 reject_low 2 ALIGNMENT 0 Y12-11n17.p1k chr02 199 667 347687 347686 F 469 0.00 1312 reject_low 5 ALIGNMENT 91 Y12-11n17.p1k chr12 204 112 962959 963051 C 93 100.00 1312 reject_low 4 ALIGNMENT 896 Y12-11n17.p1k chr10 1117 15 423426 424527 C 1103 94.83 1312 accept 0 ALIGNMENT 935 Y12-11n17.q1k chr10 35 1185 419276 420425 F 1151 94.61 1304 accept 0 ALIGNMENT 0 Y12-11n17.p1k chr14 667 205 726127 726126 C 463 0.00 1312 reject_low 3 ALIGNMENT 86 Y12-11n17.p1k chr02 112 198 347601 347687 F 87 100.00 1312 reject_low 5 ALIGNMENT 0 Y12-11n17.p1k chr02 62 111 347601 347600 F 50 0.00 1312 reject_low 5 ALIGNMENT 0 Y12-11n17.p1k chr16 453 667 212844 212843 F 215 0.00 1312 reject_low 7 ALIGNMENT 0 Y12-11n17.p1k chr11 205 667 84305 84304 F 463 0.00 1312 reject_low 1 ALIGNMENT 20 Y12-11n17.p1k chr16 422 452 212814 212844 F 31 96.77 1312 reject_low 7 ALIGNMENT 0 Y12-11n17.p1k chr12 667 205 962960 962959 C 463 0.00 1312 reject_low 4 ALIGNMENT 0 Y12-11n17.p1k chr02 62 110 9582 9581 F 49 0.00 1312 reject_low 2 ALIGNMENT 0 Y12-11n17.p1k chr04 196 667 519822 519821 F 472 0.00 1312 reject_low 6 ALIGNMENT 0 Y12-11n17.p1k chr12 111 62 963052 963051 C 50 0.00 1312 reject_low 4 ALIGNMENT 92 Y12-11n17.p1k chr14 204 111 726126 726219 C 94 100.00 1312 reject_low 3 ALIGNMENT 1008 Y12-11n21.q1k chr14 38 1259 433084 434312 F 1222 95.17 1266 accept 0 ALIGNMENT 1046 Y12-11n21.p1k chr14 1249 22 436094 437336 C 1228 96.50 1265 accept 0 ALIGNMENT 0 Y12-11n22.q1k chr07 617 62 156144 156143 C 556 0.00 1232 reject_low 1 ALIGNMENT 21 Y12-11n22.q1k chr07 651 618 156110 156143 C 34 97.06 1232 reject_low 1 ALIGNMENT 874 Y12-11n22.q1k chr04 27 1125 681377 682478 F 1099 94.63 1232 accept 0 ALIGNMENT 1031 Y12-11n22.p1k chr04 1247 11 684284 685531 C 1237 95.63 1258 accept 0 ALIGNMENT 0 Y12-11n22.q1k chr07 844 652 156111 156110 C 193 0.00 1232 reject_low 1 ALIGNMENT 991 Y12-11n23.p1k chr15 1233 24 608575 609791 C 1210 95.37 1248 accept 0 ALIGNMENT 1034 Y12-11n23.q1k chr15 32 1230 607148 608347 F 1199 96.83 1247 accept 0 ALIGNMENT 999 Y12-11n24.p1k chr04 20 1163 569755 570896 F 1144 97.03 1234 accept 0 ALIGNMENT 565 Y12-11n24.q1k chr04 761 33 573653 574399 C 729 93.55 1062 accept 0 ALIGNMENT 992 Y12-11o02.q1k chr13 34 1224 645011 646204 F 1191 94.88 1245 accept 0 ALIGNMENT 973 Y12-11o02.p1k chr13 1136 21 647840 648947 C 1116 97.49 1142 accept 0 ALIGNMENT 980 Y12-11o03.q1k chr15 1221 27 71241 72443 C 1195 94.31 1264 accept 0 ALIGNMENT 1008 Y12-11o03.p1k chr15 26 1201 67708 68899 F 1176 96.60 1232 accept 0 ALIGNMENT 1065 Y12-11o05.p1k chr15 27 1288 834405 835669 F 1262 95.56 1291 accept 0 ALIGNMENT 1027 Y12-11o05.q1k chr15 1338 34 837859 839159 C 1305 94.10 1343 accept 0 ALIGNMENT 899 Y12-11o06.q1k chr08 1124 3 83194 84320 C 1122 94.83 1283 accept 0 ALIGNMENT 681 Y12-11o06.p1k chr08 5 950 80682 81616 F 946 91.75 1271 accept 0 ALIGNMENT 119 Y12-11o07.p1k chr12 40 158 485696 485814 F 119 100.00 1301 reject_low 6 ALIGNMENT 0 Y12-11o07.p1k chr12 159 860 468930 468929 F 702 0.00 1301 reject_low 3 ALIGNMENT 754 Y12-11o07.p1k chr12 25 1239 459658 460924 F 1215 89.55 1301 accept 0 ALIGNMENT 0 Y12-11o07.p1k chr12 159 860 472582 472581 F 702 0.00 1301 reject_low 4 ALIGNMENT 119 Y12-11o07.p1k chr12 40 158 482044 482162 F 119 100.00 1301 reject_low 5 ALIGNMENT 898 Y12-11o07.q1k chr12 1088 26 454550 455630 C 1063 95.58 1292 reject_low 1 ALIGNMENT 119 Y12-11o07.p1k chr12 40 158 472464 472582 F 119 100.00 1301 reject_low 4 ALIGNMENT 0 Y12-11o07.p1k chr12 159 860 485814 485813 F 702 0.00 1301 reject_low 6 ALIGNMENT 0 Y12-11o07.p1k chr12 159 860 482162 482161 F 702 0.00 1301 reject_low 5 ALIGNMENT 117 Y12-11o07.p1k chr12 873 1239 451419 451787 F 367 80.93 1301 reject_low 1 ALIGNMENT 128 Y12-11o07.p1k chr12 40 173 489348 489481 F 134 98.51 1301 reject_low 2 ALIGNMENT 898 Y12-11o07.q1k chr12 1088 26 463687 464767 C 1063 95.58 1292 accept 0 ALIGNMENT 0 Y12-11o07.p1k chr12 62 872 451419 451418 F 811 0.00 1301 reject_low 1 ALIGNMENT 126 Y12-11o07.p1k chr12 25 158 468795 468930 F 134 98.51 1301 reject_low 3 ALIGNMENT 0 Y12-11o07.p1k chr12 174 860 489481 489480 F 687 0.00 1301 reject_low 2 ALIGNMENT 965 Y12-11o08.p1k chr16 20 1275 35187 36448 F 1256 93.95 1289 accept 0 ALIGNMENT 943 Y12-11o08.q1k chr16 1156 30 38750 39876 C 1127 94.68 1319 accept 0 ALIGNMENT 965 Y12-11o09.q1k chr04 1216 34 721492 722688 C 1183 94.76 1319 accept 0 ALIGNMENT 948 Y12-11o09.p1k chr04 22 1215 718184 719392 F 1194 94.81 1235 accept 0 ALIGNMENT 20 Y12-11o10.q1k chr12 690 642 369814 369859 C 49 83.67 1321 reject_low 18 ALIGNMENT 22 Y12-11o10.p1k chr16 134 188 187372 187426 F 55 83.64 1223 reject_low 8 ALIGNMENT 0 Y12-11o10.p1k chr06 140 62 66274 66273 C 79 0.00 1223 reject_low 13 ALIGNMENT 0 Y12-11o10.p1k chr07 203 905 530053 530052 F 703 0.00 1223 reject_low 2 ALIGNMENT 20 Y12-11o10.q1k chr12 822 774 369814 369859 C 49 83.67 1321 reject_low 18 ALIGNMENT 0 Y12-11o10.p1k chr13 905 200 354194 354193 C 706 0.00 1223 reject_low 15 ALIGNMENT 0 Y12-11o10.p1k chr07 905 199 394464 394463 C 707 0.00 1223 reject_low 16 ALIGNMENT 0 Y12-11o10.p1k chr07 62 132 529984 529983 F 71 0.00 1223 reject_low 2 ALIGNMENT 0 Y12-11o10.p1k chr12 197 905 252956 252955 F 709 0.00 1223 reject_low 7 ALIGNMENT 0 Y12-11o10.p1k chr16 62 136 187315 187314 F 75 0.00 1223 reject_low 4 ALIGNMENT 28 Y12-11o10.p1k chr08 134 202 365362 365430 F 69 84.06 1223 reject_low 5 ALIGNMENT 594 Y12-11o10.q1k chr04 35 781 600477 601201 F 747 95.45 1321 accept 0 ALIGNMENT 0 Y12-11o10.p1k chr02 62 154 272523 272522 F 93 0.00 1223 reject_low 9 ALIGNMENT 40 Y12-11o10.p1k chr07 133 202 529984 530053 F 70 90.00 1223 reject_low 2 ALIGNMENT 0 Y12-11o10.q1k chr12 773 757 369860 369813 C 17 0.00 1321 reject_low 18 ALIGNMENT 22 Y12-11o10.p1k chr11 203 164 280027 280066 C 40 90.00 1223 reject_low 12 ALIGNMENT 0 Y12-11o10.p1k chr08 203 905 365430 365429 F 703 0.00 1223 reject_low 5 ALIGNMENT 0 Y12-11o10.p1k chr12 62 138 252899 252898 F 77 0.00 1223 reject_low 7 ALIGNMENT 24 Y12-11o10.p1k chr11 163 202 196356 196395 F 40 90.00 1223 reject_low 11 ALIGNMENT 0 Y12-11o10.p1k chr11 62 165 561409 561408 F 104 0.00 1223 reject_low 17 ALIGNMENT 0 Y12-11o10.p1k chr15 62 139 427988 427987 F 78 0.00 1223 reject_low 6 ALIGNMENT 0 Y12-11o10.p1k chr15 202 905 428049 428048 F 704 0.00 1223 reject_low 6 ALIGNMENT 0 Y12-11o10.p1k chr16 202 905 187379 187378 F 704 0.00 1223 reject_low 4 ALIGNMENT 0 Y12-11o10.p1k chr11 62 162 196356 196355 F 101 0.00 1223 reject_low 11 ALIGNMENT 0 Y12-11o10.p1k chr11 905 204 280028 280027 C 702 0.00 1223 reject_low 12 ALIGNMENT 0 Y12-11o10.p1k chr06 905 204 92723 92722 C 702 0.00 1223 reject_low 14 ALIGNMENT 0 Y12-11o10.p1k chr06 905 186 66230 66229 C 720 0.00 1223 reject_low 13 ALIGNMENT 20 Y12-11o10.q1k chr12 756 708 369814 369859 C 49 83.67 1321 reject_low 18 ALIGNMENT 996 Y12-11o10.p1k chr04 1212 16 603217 604412 C 1197 95.91 1223 accept 0 ALIGNMENT 0 Y12-11o10.p1k chr16 62 133 187372 187371 F 72 0.00 1223 reject_low 8 ALIGNMENT 30 Y12-11o10.p1k chr16 137 201 187315 187379 F 65 86.15 1223 reject_low 4 ALIGNMENT 28 Y12-11o10.p1k chr12 139 196 252899 252956 F 58 86.21 1223 reject_low 7 ALIGNMENT 0 Y12-11o10.p1k chr07 160 62 394501 394500 C 99 0.00 1223 reject_low 16 ALIGNMENT 0 Y12-11o10.p1k chr11 163 62 386822 386821 C 102 0.00 1223 reject_low 10 ALIGNMENT 0 Y12-11o10.p1k chr11 203 905 196395 196394 F 703 0.00 1223 reject_low 11 ALIGNMENT 31 Y12-11o10.p1k chr15 134 192 427907 427965 F 59 88.14 1223 reject_low 3 ALIGNMENT 0 Y12-11o10.p1k chr11 905 201 386786 386785 C 705 0.00 1223 reject_low 10 ALIGNMENT 0 Y12-11o10.p1k chr11 190 905 561432 561431 F 716 0.00 1223 reject_low 17 ALIGNMENT 28 Y12-11o10.p1k chr15 140 201 427988 428049 F 62 85.48 1223 reject_low 6 ALIGNMENT 25 Y12-11o10.p1k chr13 199 164 354193 354228 C 36 94.44 1223 reject_low 15 ALIGNMENT 0 Y12-11o10.q1k chr04 782 822 601201 601200 F 41 0.00 1321 accept 0 ALIGNMENT 204 Y12-11o10.q1k chr04 782 1168 601136 601541 F 387 87.86 1321 reject_low 1 ALIGNMENT 0 Y12-11o10.p1k chr16 189 905 187426 187425 F 717 0.00 1223 reject_low 8 ALIGNMENT 20 Y12-11o10.p1k chr06 203 174 92722 92751 C 30 93.33 1223 reject_low 14 ALIGNMENT 0 Y12-11o10.q1k chr12 707 691 369860 369813 C 17 0.00 1321 reject_low 18 ALIGNMENT 0 Y12-11o10.q1k chr04 62 781 601136 601135 F 720 0.00 1321 reject_low 1 ALIGNMENT 0 Y12-11o10.p1k chr06 173 62 92752 92751 C 112 0.00 1223 reject_low 14 ALIGNMENT 22 Y12-11o10.p1k chr07 198 161 394463 394500 C 38 89.47 1223 reject_low 16 ALIGNMENT 22 Y12-11o10.p1k chr11 166 189 561409 561432 F 24 100.00 1223 reject_low 17 ALIGNMENT 0 Y12-11o10.p1k chr11 163 62 280067 280066 C 102 0.00 1223 reject_low 12 ALIGNMENT 26 Y12-11o10.p1k chr11 200 164 386785 386821 C 37 94.59 1223 reject_low 10 ALIGNMENT 20 Y12-11o10.p1k chr06 185 141 66229 66273 C 45 84.44 1223 reject_low 13 ALIGNMENT 0 Y12-11o10.p1k chr02 196 905 272563 272562 F 710 0.00 1223 reject_low 9 ALIGNMENT 0 Y12-11o10.p1k chr15 62 133 427907 427906 F 72 0.00 1223 reject_low 3 ALIGNMENT 0 Y12-11o10.p1k chr13 163 62 354229 354228 C 102 0.00 1223 reject_low 15 ALIGNMENT 0 Y12-11o10.q1k chr12 641 62 369860 369859 C 580 0.00 1321 reject_low 18 ALIGNMENT 0 Y12-11o10.p1k chr15 193 905 427965 427964 F 713 0.00 1223 reject_low 3 ALIGNMENT 25 Y12-11o10.p1k chr02 155 195 272523 272563 F 41 90.24 1223 reject_low 9 ALIGNMENT 0 Y12-11o10.p1k chr08 62 133 365362 365361 F 72 0.00 1223 reject_low 5 ALIGNMENT 1011 Y12-11o11.p1k chr09 20 1192 243928 245114 F 1173 96.25 1269 accept 0 ALIGNMENT 1045 Y12-11o11.q1k chr09 1210 33 247141 248323 C 1178 97.03 1323 accept 0 ALIGNMENT 1018 Y12-11o12.p1k chr10 1265 18 233522 234780 C 1248 95.27 1265 accept_chi 0 ALIGNMENT 60 Y12-11o12.p1k chr05 869 942 492347 492419 F 74 93.24 1265 reject_low 6 ALIGNMENT 63 Y12-11o12.p1k chr12 944 868 374354 374429 C 77 93.51 1265 reject_low 5 ALIGNMENT 0 Y12-11o12.p1k chr04 62 867 619963 619962 F 806 0.00 1265 reject_low 4 ALIGNMENT 63 Y12-11o12.p1k chr04 868 944 619963 620038 F 77 93.51 1265 reject_low 4 ALIGNMENT 0 Y12-11o12.p1k chr11 865 62 490687 490686 C 804 0.00 1265 reject_low 2 ALIGNMENT 0 Y12-11o12.p1k chr12 867 62 374430 374429 C 806 0.00 1265 reject_low 5 ALIGNMENT 0 Y12-11o12.p1k chr05 62 868 492347 492346 F 807 0.00 1265 reject_low 6 ALIGNMENT 0 Y12-11o12.p1k chr15 62 867 340298 340297 F 806 0.00 1265 reject_low 3 ALIGNMENT 955 Y12-11o12.q1k chr06 1109 39 29823 30893 C 1071 97.01 1327 accept_chi 1 ALIGNMENT 65 Y12-11o12.p1k chr15 868 946 340298 340375 F 79 93.67 1265 reject_low 3 ALIGNMENT 67 Y12-11o12.p1k chr11 956 866 490595 490686 C 91 91.21 1265 reject_low 2 ALIGNMENT 993 Y12-11o13.q1k chr14 1193 35 46318 47494 C 1159 96.38 1291 accept 0 ALIGNMENT 966 Y12-11o13.p1k chr14 17 1153 43320 44478 F 1137 96.13 1272 accept 0 ALIGNMENT 0 Y12-11o14.p1k chr13 302 273 362919 372695 C 30 0.00 1317 reject_low 36 ALIGNMENT 36 Y12-11o14.p1k chr06 202 274 143867 143939 F 73 86.30 1317|3,0 reject_low 40 ALIGNMENT 97 Y12-11o14.p1k chr14 134 16 102330 102449 C 119 97.48 1317 reject_low 39 ALIGNMENT 0 Y12-11o14.p1k chr06 332 879 143562 143561 F 548 0.00 1317 reject_low 41 ALIGNMENT 226 Y12-11o14.p1k chr02 16 272 259650 259907 F 257 98.05 1317 reject_low 33 ALIGNMENT 229 Y12-11o14.p1k chr15 16 272 594895 595152 F 257 98.44 1317 reject_low 32 ALIGNMENT 0 Y12-11o14.p1k chr07 253 879 535526 535525 F 627 0.00 1317 reject_low 8 ALIGNMENT 0 Y12-11o14.p1k chr07 303 62 823312 823311 C 242 0.00 1317 reject_low 21 ALIGNMENT 0 Y12-11o14.p1k chr02 334 879 259605 259604 F 546 0.00 1317 reject_low 18 ALIGNMENT 30 Y12-11o14.p1k chr13 333 303 357306 357336 C 31 100.00 1317 reject_low 37 ALIGNMENT 223 Y12-11o14.p1k chr13 16 272 184244 184501 F 257 97.67 1317 reject_low 35 ALIGNMENT 159 Y12-11o14.p1k chr01 252 31 165847 166074 C 222 92.79 1317 reject_low 14 ALIGNMENT 0 Y12-11o14.p1k chr13 334 879 184199 184198 F 546 0.00 1317 reject_low 24 ALIGNMENT 30 Y12-11o14.p1k chr13 333 303 373004 373034 C 31 100.00 1317 reject_low 16 ALIGNMENT 0 Y12-11o14.p1k chr11 303 62 517427 517426 C 242 0.00 1317 reject_low 23 ALIGNMENT 0 Y12-11o14.p1k chr13 879 334 357307 357306 C 546 0.00 1317 reject_low 37 ALIGNMENT 212 Y12-11o14.p1k chr02 16 252 226698 226935 F 237 98.73 1317 reject_low 7 ALIGNMENT 0 Y12-11o14.p1k chr07 879 275 817397 817396 C 605 0.00 1317 reject_low 2 ALIGNMENT 30 Y12-11o14.p1k chr15 303 333 600402 600432 F 31 100.00 1317 reject_low 32 ALIGNMENT 0 Y12-11o14.p1k chr15 273 302 595153 600401 F 30 0.00 1317 reject_low 32 ALIGNMENT 29 Y12-11o14.p1k chr11 333 304 517397 517426 C 30 100.00 1317 reject_low 23 ALIGNMENT 0 Y12-11o14.p1k chr06 258 879 158669 158668 F 622 0.00 1317 reject_low 15 ALIGNMENT 29 Y12-11o14.p1k chr06 333 304 162100 162129 C 30 100.00 1317 reject_low 19 ALIGNMENT 0 Y12-11o14.p1k chr13 879 334 362889 362888 C 546 0.00 1317 reject_low 36 ALIGNMENT 0 Y12-11o14.p1k chr02 274 879 265493 265492 F 606 0.00 1317 reject_low 3 ALIGNMENT 29 Y12-11o14.p1k chr07 333 304 823282 823311 C 30 100.00 1317 reject_low 21 ALIGNMENT 54 Y12-11o14.p1k chr07 69 249 817206 817387 F 181 81.22 1317 reject_low 30 ALIGNMENT 0 Y12-11o14.p1k chr13 273 302 184502 189750 F 30 0.00 1317 reject_low 35 ALIGNMENT 758 Y12-11o14.p1k chr14 279 1211 102524 103443 F 933 96.03 1317 accept 0 ALIGNMENT 0 Y12-11o14.p1k chr14 879 253 96631 96630 C 627 0.00 1317 reject_low 11 ALIGNMENT 72 Y12-11o14.p1k chr06 31 249 137997 138216 F 219 81.28 1317 reject_low 41 ALIGNMENT 29 Y12-11o14.p1k chr08 333 304 549608 549637 C 30 100.00 1317 reject_low 22 ALIGNMENT 29 Y12-11o14.p1k chr14 333 304 102494 102523 C 30 100.00 1317 reject_low 25 ALIGNMENT 124 Y12-11o14.p1k chr06 56 257 158470 158669 F 202 90.10 1317 reject_low 15 ALIGNMENT 0 Y12-11o14.p1k chr14 302 135 96943 102329 C 168 0.00 1317 reject_low 39 ALIGNMENT 231 Y12-11o14.p1k chr07 274 16 817396 817655 C 259 98.46 1317 reject_low 2 ALIGNMENT 206 Y12-11o14.p1k chr14 252 16 96630 96867 C 237 97.89 1317 reject_low 11 ALIGNMENT 223 Y12-11o14.p1k chr08 272 16 549306 549563 C 257 97.67 1317 reject_low 34 ALIGNMENT 0 Y12-11o14.p1k chr02 253 302 221354 226622 F 50 0.00 1317 reject_low 38 ALIGNMENT 229 Y12-11o14.p1k chr15 16 272 600477 600734 F 257 98.44 1317 reject_low 4 ALIGNMENT 0 Y12-11o14.p1k chr02 62 303 221040 221039 F 242 0.00 1317 reject_low 17 ALIGNMENT 0 Y12-11o14.p1k chr13 302 62 373035 373034 C 241 0.00 1317 reject_low 16 ALIGNMENT 0 Y12-11o14.p1k chr06 205 204 137906 143869 F 0 0.00 1317 reject_low 40 ALIGNMENT 0 Y12-11o14.p1k chr07 302 273 817731 822979 C 30 0.00 1317 reject_low 31 ALIGNMENT 212 Y12-11o14.p1k chr11 252 16 517115 517352 C 237 98.73 1317 reject_low 9 ALIGNMENT 0 Y12-11o14.p1k chr13 879 334 373005 373004 C 546 0.00 1317 reject_low 16 ALIGNMENT 212 Y12-11o14.p1k chr13 252 16 357024 357261 C 237 98.73 1317 reject_low 10 ALIGNMENT 0 Y12-11o14.p1k chr06 250 879 143843 143842 F 630 0.00 1317 reject_low 27 ALIGNMENT 0 Y12-11o14.p1k chr07 879 334 823283 823282 C 546 0.00 1317 reject_low 21 ALIGNMENT 0 Y12-11o14.p1k chr07 334 879 535244 535243 F 546 0.00 1317 reject_low 20 ALIGNMENT 0 Y12-11o14.p1k chr08 303 62 549638 549637 C 242 0.00 1317 reject_low 22 ALIGNMENT 0 Y12-11o14.p1k chr06 470 62 137555 137554 C 409 0.00 1317 reject_low 1 ALIGNMENT 0 Y12-11o14.p1k chr06 62 302 137907 137906 F 241 0.00 1317 reject_low 29 ALIGNMENT 0 Y12-11o14.p1k chr06 303 62 162130 162129 C 242 0.00 1317 reject_low 19 ALIGNMENT 0 Y12-11o14.p1k chr02 334 879 265190 265189 F 546 0.00 1317 reject_low 33 ALIGNMENT 0 Y12-11o14.p1k chr14 303 62 102524 102523 C 242 0.00 1317 reject_low 25 ALIGNMENT 78 Y12-11o14.p1k chr06 551 471 137474 137554 C 81 98.77 1317 reject_low 1 ALIGNMENT 0 Y12-11o14.p1k chr07 879 334 817701 817700 C 546 0.00 1317 reject_low 31 ALIGNMENT 0 Y12-11o14.p1k chr13 273 879 190083 190082 F 607 0.00 1317 reject_low 6 ALIGNMENT 0 Y12-11o14.p1k chr15 273 879 600734 600733 F 607 0.00 1317 reject_low 4 ALIGNMENT 212 Y12-11o14.p1k chr13 252 16 362606 362843 C 237 98.73 1317 reject_low 37 ALIGNMENT 205 Y12-11o14.p1k chr02 16 252 221114 221353 F 237 97.89 1317 reject_low 38 ALIGNMENT 229 Y12-11o14.p1k chr07 272 16 822980 823237 C 257 98.44 1317 reject_low 31 ALIGNMENT 0 Y12-11o14.p1k chr14 879 334 96913 96912 C 546 0.00 1317 reject_low 39 ALIGNMENT 0 Y12-11o14.p1k chr13 334 879 189781 189780 F 546 0.00 1317 reject_low 35 ALIGNMENT 30 Y12-11o14.p1k chr14 333 303 96912 96942 C 31 100.00 1317 reject_low 39 ALIGNMENT 227 Y12-11o14.p1k chr02 16 273 265235 265493 F 258 98.06 1317 reject_low 3 ALIGNMENT 226 Y12-11o14.p1k chr08 272 16 543610 543867 C 257 98.05 1317 reject_low 5 ALIGNMENT 194 Y12-11o14.p1k chr06 252 16 161818 162055 C 237 96.20 1317 reject_low 12 ALIGNMENT 0 Y12-11o14.p1k chr02 62 303 259576 259575 F 242 0.00 1317 reject_low 18 ALIGNMENT 0 Y12-11o14.p1k chr14 62 278 102524 102523 F 217 0.00 1317 accept 0 ALIGNMENT 30 Y12-11o14.p1k chr02 303 333 265160 265190 F 31 100.00 1317 reject_low 33 ALIGNMENT 0 Y12-11o14.p1k chr02 253 879 226935 226934 F 627 0.00 1317 reject_low 7 ALIGNMENT 0 Y12-11o14.p1k chr08 879 273 543611 543610 C 607 0.00 1317 reject_low 5 ALIGNMENT 0 Y12-11o14.p1k chr01 879 253 160260 160259 C 627 0.00 1317 reject_low 13 ALIGNMENT 22 Y12-11o14.p1k chr06 303 331 137907 137935 F 29 93.10 1317 reject_low 29 ALIGNMENT 0 Y12-11o14.p1k chr08 302 273 543943 549305 C 30 0.00 1317 reject_low 34 ALIGNMENT 0 Y12-11o14.p1k chr06 879 253 161819 161818 C 627 0.00 1317 reject_low 12 ALIGNMENT 29 Y12-11o14.p1k chr02 304 333 259576 259605 F 30 100.00 1317 reject_low 18 ALIGNMENT 212 Y12-11o14.p1k chr07 16 252 535289 535526 F 237 98.73 1317 reject_low 8 ALIGNMENT 0 Y12-11o14.p1k chr06 62 306 137658 137657 F 245 0.00 1317 reject_low 28 ALIGNMENT 0 Y12-11o14.p1k chr14 879 334 102495 102494 C 546 0.00 1317 reject_low 25 ALIGNMENT 30 Y12-11o14.p1k chr13 333 303 362888 362918 C 31 100.00 1317 reject_low 36 ALIGNMENT 30 Y12-11o14.p1k chr13 303 333 189751 189781 F 31 100.00 1317 reject_low 35 ALIGNMENT 0 Y12-11o14.p1k chr11 879 334 517398 517397 C 546 0.00 1317 reject_low 23 ALIGNMENT 0 Y12-11o14.p1k chr08 879 334 543913 543912 C 546 0.00 1317 reject_low 34 ALIGNMENT 0 Y12-11o14.p1k chr07 250 879 817387 817386 F 630 0.00 1317 reject_low 30 ALIGNMENT 23 Y12-11o14.p1k chr06 307 333 137658 137684 F 27 96.30 1317 reject_low 28 ALIGNMENT 226 Y12-11o14.p1k chr13 16 272 189826 190083 F 257 98.05 1317 reject_low 6 ALIGNMENT 0 Y12-11o14.p1k chr15 334 879 600432 600431 F 546 0.00 1317 reject_low 32 ALIGNMENT 30 Y12-11o14.p1k chr08 333 303 543912 543942 C 31 100.00 1317 reject_low 34 ALIGNMENT 159 Y12-11o14.p1k chr01 252 31 160259 160486 C 222 92.79 1317 reject_low 13 ALIGNMENT 0 Y12-11o14.p1k chr13 879 253 357025 357024 C 627 0.00 1317 reject_low 10 ALIGNMENT 0 Y12-11o14.p1k chr08 879 334 549609 549608 C 546 0.00 1317 reject_low 22 ALIGNMENT 0 Y12-11o14.p1k chr01 879 253 165848 165847 C 627 0.00 1317 reject_low 14 ALIGNMENT 200 Y12-11o14.p1k chr13 272 16 372696 372959 C 257 94.94 1317 reject_low 36 ALIGNMENT 0 Y12-11o14.p1k chr02 273 302 259908 265159 F 30 0.00 1317 reject_low 33 ALIGNMENT 0 Y12-11o14.p1k chr06 334 879 137684 137683 F 546 0.00 1317 reject_low 28 ALIGNMENT 0 Y12-11o14.p1k chr13 302 253 357337 362605 C 50 0.00 1317 reject_low 37 ALIGNMENT 0 Y12-11o14.p1k chr13 62 303 184170 184169 F 242 0.00 1317 reject_low 24 ALIGNMENT 0 Y12-11o14.p1k chr15 62 303 594821 594820 F 242 0.00 1317 reject_low 26 ALIGNMENT 29 Y12-11o14.p1k chr15 304 333 594821 594850 F 30 100.00 1317 reject_low 26 ALIGNMENT 0 Y12-11o14.p1k chr07 62 303 535215 535214 F 242 0.00 1317 reject_low 20 ALIGNMENT 112 Y12-11o14.p1k chr06 16 206 137724 137907 F 191 90.58 1317|0,2 reject_low 40 ALIGNMENT 0 Y12-11o14.p1k chr02 334 879 226653 226652 F 546 0.00 1317 reject_low 38 ALIGNMENT 0 Y12-11o14.p1k chr06 879 334 162101 162100 C 546 0.00 1317 reject_low 19 ALIGNMENT 30 Y12-11o14.p1k chr02 303 333 226623 226653 F 31 100.00 1317 reject_low 38 ALIGNMENT 0 Y12-11o14.p1k chr02 334 879 221069 221068 F 546 0.00 1317 reject_low 17 ALIGNMENT 29 Y12-11o14.p1k chr07 304 333 535215 535244 F 30 100.00 1317 reject_low 20 ALIGNMENT 0 Y12-11o14.p1k chr06 275 879 143939 143938 F 605 0.00 1317 reject_low 40 ALIGNMENT 969 Y12-11o14.q1k chr14 1227 38 106940 108137 C 1190 94.71 1316 accept 0 ALIGNMENT 0 Y12-11o14.p1k chr06 879 552 137475 137474 C 328 0.00 1317 reject_low 1 ALIGNMENT 0 Y12-11o14.p1k chr06 332 879 137935 137934 F 548 0.00 1317 reject_low 29 ALIGNMENT 0 Y12-11o14.p1k chr15 334 879 594850 594849 F 546 0.00 1317 reject_low 26 ALIGNMENT 22 Y12-11o14.p1k chr06 303 331 143534 143562 F 29 93.10 1317 reject_low 41 ALIGNMENT 0 Y12-11o14.p1k chr06 250 302 138217 143533 F 53 0.00 1317 reject_low 41 ALIGNMENT 29 Y12-11o14.p1k chr13 304 333 184170 184199 F 30 100.00 1317 reject_low 24 ALIGNMENT 0 Y12-11o14.p1k chr11 879 253 517116 517115 C 627 0.00 1317 reject_low 9 ALIGNMENT 30 Y12-11o14.p1k chr07 333 303 817700 817730 C 31 100.00 1317 reject_low 31 ALIGNMENT 72 Y12-11o14.p1k chr06 31 249 143624 143843 F 219 81.28 1317 reject_low 27 ALIGNMENT 29 Y12-11o14.p1k chr02 304 333 221040 221069 F 30 100.00 1317 reject_low 17 ALIGNMENT 855 Y12-11o16.q1k chr04 1008 25 96608 97577 C 984 97.36 1371 accept 0 ALIGNMENT 872 Y12-11o16.p1k chr04 23 1077 92277 93318 F 1055 96.49 1293 accept 0 ALIGNMENT 975 Y12-11o17.p1k chr10 1175 26 140017 141179 C 1150 96.43 1235 accept 0 ALIGNMENT 988 Y12-11o17.q1k chr10 34 1115 136087 137175 F 1082 97.69 1288 accept 0 ALIGNMENT 1004 Y12-11o18.q1k chr04 33 1220 58929 60125 F 1188 95.45 1266 accept 0 ALIGNMENT 1019 Y12-11o18.p1k chr04 1167 21 63671 64828 C 1147 96.69 1223 accept 0 ALIGNMENT 998 Y12-11o19.p1k chr12 19 1156 970084 971229 F 1138 96.40 1260 accept 0 ALIGNMENT 954 Y12-11o19.q1k chr12 1150 34 974533 975659 C 1117 96.87 1251 accept 0 ALIGNMENT 0 Y12-11o20.q1k chr12 253 870 215418 215417 F 618 0.00 1288 reject_low 23 ALIGNMENT 193 Y12-11o20.q1k chr08 37 252 116532 116747 F 216 99.07 1288 reject_low 12 ALIGNMENT 0 Y12-11o20.q1k chr03 62 94 168771 168770 F 33 0.00 1288 reject_low 2 ALIGNMENT 63 Y12-11o20.q1k chr03 95 252 168771 168928 F 158 82.91 1288 reject_low 2 ALIGNMENT 0 Y12-11o20.q1k chr13 870 264 184159 184158 C 607 0.00 1288 reject_low 4 ALIGNMENT 262 Y12-11o20.q1k chr07 326 37 401888 402177 C 290 99.66 1288 accept 0 ALIGNMENT 0 Y12-11o20.q1k chr08 254 870 549638 549637 F 617 0.00 1288 reject_low 7 ALIGNMENT 194 Y12-11o20.q1k chr02 254 37 221038 221255 C 218 99.08 1288 reject_low 5 ALIGNMENT 0 Y12-11o20.q1k chr07 870 253 931692 931691 C 618 0.00 1288 reject_low 11 ALIGNMENT 45 Y12-11o20.q1k chr07 306 371 401829 401894 F 66 90.91 1288 reject_low 18 ALIGNMENT 0 Y12-11o20.q1k chr03 870 254 169202 169201 C 617 0.00 1288 reject_low 27 ALIGNMENT 0 Y12-11o20.q1k chr03 253 870 124462 124461 F 618 0.00 1288 reject_low 21 ALIGNMENT 193 Y12-11o20.q1k chr14 37 252 96726 96941 F 216 99.07 1288 reject_low 16 ALIGNMENT 0 Y12-11o20.q1k chr07 372 870 401894 401893 F 499 0.00 1288 reject_low 18 ALIGNMENT 45 Y12-11o20.q1k chr03 201 37 149531 149691 C 165 81.21 1288 reject_low 26 ALIGNMENT 0 Y12-11o20.q1k chr02 870 255 221039 221038 C 616 0.00 1288 reject_low 5 ALIGNMENT 191 Y12-11o20.q1k chr02 254 37 259574 259791 C 218 98.62 1288 reject_low 19 ALIGNMENT 0 Y12-11o20.q1k chr15 870 254 594821 594820 C 617 0.00 1288 reject_low 8 ALIGNMENT 170 Y12-11o20.q1k chr12 37 252 215197 215418 F 216 95.83 1288 reject_low 23 ALIGNMENT 194 Y12-11o20.q1k chr07 37 264 823096 823323 F 228 97.81 1288 reject_low 3 ALIGNMENT 0 Y12-11o20.q1k chr07 265 870 823323 823322 F 606 0.00 1288 reject_low 3 ALIGNMENT 0 Y12-11o20.q1k chr15 870 253 600404 600403 C 618 0.00 1288 reject_low 17 ALIGNMENT 0 Y12-11o20.q1k chr02 870 253 226625 226624 C 618 0.00 1288 reject_low 9 ALIGNMENT 0 Y12-11o20.q1k chr13 253 870 357335 357334 F 618 0.00 1288 reject_low 15 ALIGNMENT 0 Y12-11o20.q1k chr07 431 327 401624 401887 C 105 0.00 1288 accept 0 ALIGNMENT 54 Y12-11o20.q1k chr15 134 38 594630 594726 C 97 88.66 1288 reject_low 25 ALIGNMENT 0 Y12-11o20.q1k chr03 870 255 151517 151516 C 616 0.00 1288 reject_low 20 ALIGNMENT 193 Y12-11o20.q1k chr13 37 252 357120 357335 F 216 99.07 1288 reject_low 15 ALIGNMENT 0 Y12-11o20.q1k chr11 870 309 457781 457780 C 562 0.00 1288 reject_low 24 ALIGNMENT 0 Y12-11o20.q1k chr03 221 62 169233 169232 C 160 0.00 1288 reject_low 27 ALIGNMENT 0 Y12-11o20.q1k chr15 870 135 594631 594630 C 736 0.00 1288 reject_low 25 ALIGNMENT 193 Y12-11o20.q1k chr15 252 37 600403 600618 C 216 99.07 1288 reject_low 17 ALIGNMENT 31 Y12-11o20.q1k chr03 253 222 169201 169232 C 32 100.00 1288 reject_low 27 ALIGNMENT 193 Y12-11o20.q1k chr08 37 252 543726 543941 F 216 99.07 1288 reject_low 13 ALIGNMENT 0 Y12-11o20.q1k chr04 870 429 1175134 1175133 C 442 0.00 1288 reject_low 1 ALIGNMENT 0 Y12-11o20.q1k chr11 275 62 457813 457812 C 214 0.00 1288 reject_low 24 ALIGNMENT 223 Y12-11o20.q1k chr04 428 37 1175133 1175523 C 392 88.27 1288 reject_low 1 ALIGNMENT 193 Y12-11o20.q1k chr11 37 252 457899 458114 F 216 99.07 1288 reject_low 14 ALIGNMENT 194 Y12-11o20.q1k chr15 253 37 594820 595036 C 217 99.08 1288 reject_low 8 ALIGNMENT 192 Y12-11o20.q1k chr13 263 37 184158 184385 C 227 97.80 1288 reject_low 4 ALIGNMENT 184 Y12-11o20.q1k chr03 37 252 124247 124462 F 216 97.69 1288 reject_low 21 ALIGNMENT 0 Y12-11o20.q1k chr08 253 870 116747 116746 F 618 0.00 1288 reject_low 12 ALIGNMENT 0 Y12-11o20.q1k chr03 253 305 168929 168932 F 53 0.00 1288 reject_low 2 ALIGNMENT 0 Y12-11o20.q1k chr03 870 202 149532 149531 C 669 0.00 1288 reject_low 26 ALIGNMENT 0 Y12-11o20.q1k chr03 254 870 143078 143077 F 617 0.00 1288 reject_low 22 ALIGNMENT 0 Y12-11o20.q1k chr07 253 870 817729 817728 F 618 0.00 1288 reject_low 10 ALIGNMENT 173 Y12-11o20.q1k chr03 37 253 142862 143078 F 217 95.85 1288 reject_low 22 ALIGNMENT 0 Y12-11o20.q1k chr11 253 870 458114 458113 F 618 0.00 1288 reject_low 14 ALIGNMENT 193 Y12-11o20.q1k chr07 37 252 817514 817729 F 216 99.07 1288 reject_low 10 ALIGNMENT 0 Y12-11o20.q1k chr08 253 870 543941 543940 F 618 0.00 1288 reject_low 13 ALIGNMENT 0 Y12-11o20.q1k chr02 870 255 259575 259574 C 616 0.00 1288 reject_low 19 ALIGNMENT 20 Y12-11o20.q1k chr11 308 276 457780 457812 C 33 93.94 1288 reject_low 24 ALIGNMENT 0 Y12-11o20.q1k chr14 253 870 96941 96940 F 618 0.00 1288 reject_low 16 ALIGNMENT 193 Y12-11o20.q1k chr02 252 37 226624 226839 C 216 99.07 1288 reject_low 9 ALIGNMENT 194 Y12-11o20.q1k chr08 37 253 549422 549638 F 217 99.08 1288 reject_low 7 ALIGNMENT 0 Y12-11o20.q1k chr03 435 870 169061 169060 F 436 0.00 1288 reject_low 2 ALIGNMENT 621 Y12-11o20.q1k chr07 1232 432 400830 401623 C 801 93.88 1288 accept 0 ALIGNMENT 194 Y12-11o20.q1k chr07 253 37 535214 535430 C 217 99.08 1288 reject_low 6 ALIGNMENT 193 Y12-11o20.q1k chr07 252 37 931691 931906 C 216 99.07 1288 reject_low 11 ALIGNMENT 96 Y12-11o20.q1k chr03 306 434 168933 169061 F 129 92.25 1288 reject_low 2 ALIGNMENT 0 Y12-11o20.q1k chr07 870 254 535215 535214 C 617 0.00 1288 reject_low 6 ALIGNMENT 0 Y12-11o20.q1k chr07 62 305 401829 401828 F 244 0.00 1288 reject_low 18 ALIGNMENT 190 Y12-11o20.q1k chr03 254 37 151516 151732 C 218 98.62 1288 reject_low 20 ALIGNMENT 1016 Y12-11o22.p1k chr02 17 1248 677561 678807 F 1232 94.97 1262 accept 0 ALIGNMENT 999 Y12-11o22.q1k chr02 1242 33 682349 683550 C 1210 95.62 1273 accept 0 ALIGNMENT 0 Y12-11o23.q1k chr12 62 419 489754 489753 F 358 0.00 1233 reject_low 2 ALIGNMENT 1047 Y12-11o23.p1k chr12 1222 23 464235 465446 C 1200 96.42 1228 accept 0 ALIGNMENT 635 Y12-11o23.q1k chr12 420 1210 489754 490543 F 791 94.31 1233 reject_low 2 ALIGNMENT 1047 Y12-11o23.p1k chr12 1222 23 455098 456309 C 1200 96.42 1228 reject_low 1 ALIGNMENT 968 Y12-11o23.q1k chr12 37 1218 460521 461721 F 1182 94.92 1233 accept 0 ALIGNMENT 935 Y12-11o23.q1k chr12 72 1218 451419 452584 F 1147 94.77 1233 reject_low 1 ALIGNMENT 1021 Y12-11o24.q1k chr13 1227 40 318535 319713 C 1188 96.63 1244 accept 0 ALIGNMENT 906 Y12-11o24.p1k chr13 23 1044 316589 317603 F 1022 97.55 1275 accept 0 ALIGNMENT 302 Y12-11p01.q1k chr04 781 239 57010 57550 C 543 86.19 1377 accept 0 ALIGNMENT 868 Y12-11p02.q1k chr03 1208 39 113510 114692 C 1170 93.08 1240 accept_chi 1 ALIGNMENT 988 Y12-11p02.p1k chr02 1131 20 520921 522029 C 1112 97.48 1131 accept_chi 0 ALIGNMENT 918 Y12-11p03.q1k chr04 1221 40 56564 57759 C 1182 93.74 1293 accept 0 ALIGNMENT 1023 Y12-11p03.p1k chr04 17 1247 51756 52989 F 1231 95.21 1250 accept 0 ALIGNMENT 1013 Y12-11p04.q1k chr06 32 1179 247669 248824 F 1148 96.69 1281 accept 0 ALIGNMENT 1028 Y12-11p04.p1k chr06 1225 17 250913 252123 C 1209 95.37 1237 accept 0 ALIGNMENT 202 Y12-11p05.p1k chr12 800 7 464790 465575 C 794 76.70 1306 accept 0 ALIGNMENT 185 Y12-11p05.p1k chr12 646 7 455807 456438 C 640 77.50 1306 reject_low 1 ALIGNMENT 1015 Y12-11p06.p1k chr01 1246 16 174902 176142 C 1231 95.45 1252 accept 0 ALIGNMENT 979 Y12-11p06.q1k chr01 40 1206 170392 171578 F 1167 95.54 1308 accept 0 ALIGNMENT 128 Y12-11p07.q1k chr12 181 314 489348 489481 F 134 98.51 1331 reject_low 3 ALIGNMENT 0 Y12-11p07.q1k chr12 62 180 472464 472463 F 119 0.00 1331 reject_low 4 ALIGNMENT 1046 Y12-11p07.p1k chr12 1215 18 464385 465595 C 1198 96.58 1270 accept 0 ALIGNMENT 119 Y12-11p07.q1k chr12 181 299 482044 482162 F 119 100.00 1331 reject_low 5 ALIGNMENT 268 Y12-11p07.q1k chr12 29 299 468660 468930 F 271 100.00 1331 reject_low 2 ALIGNMENT 0 Y12-11p07.q1k chr12 315 833 489481 489480 F 519 0.00 1331 reject_low 3 ALIGNMENT 0 Y12-11p07.q1k chr12 62 180 485696 485695 F 119 0.00 1331 reject_low 6 ALIGNMENT 0 Y12-11p07.q1k chr12 62 180 489348 489347 F 119 0.00 1331 reject_low 3 ALIGNMENT 0 Y12-11p07.q1k chr12 300 833 472582 472581 F 534 0.00 1331 reject_low 4 ALIGNMENT 827 Y12-11p07.q1k chr12 29 1156 459523 460691 F 1128 92.64 1331 accept 0 ALIGNMENT 0 Y12-11p07.q1k chr12 300 833 468930 468929 F 534 0.00 1331 reject_low 2 ALIGNMENT 0 Y12-11p07.q1k chr12 62 180 482044 482043 F 119 0.00 1331 reject_low 5 ALIGNMENT 0 Y12-11p07.q1k chr12 300 833 482162 482161 F 534 0.00 1331 reject_low 5 ALIGNMENT 0 Y12-11p07.q1k chr12 300 833 485814 485813 F 534 0.00 1331 reject_low 6 ALIGNMENT 119 Y12-11p07.q1k chr12 181 299 485696 485814 F 119 100.00 1331 reject_low 6 ALIGNMENT 1046 Y12-11p07.p1k chr12 1215 18 455248 456458 C 1198 96.58 1270 reject_low 1 ALIGNMENT 119 Y12-11p07.q1k chr12 181 299 472464 472582 F 119 100.00 1331 reject_low 4 ALIGNMENT 997 Y12-11p08.p1k chr03 1251 22 67944 69193 C 1230 94.96 1277 accept 0 ALIGNMENT 808 Y12-11p08.q1k chr03 39 1027 64655 65657 F 989 95.15 1255 accept 0 ALIGNMENT 36 Y12-11p09.q1k chr12 147 188 806784 806825 F 42 95.24 1336 reject_low 3 ALIGNMENT 0 Y12-11p09.q1k chr12 189 878 806825 806824 F 690 0.00 1336 reject_low 3 ALIGNMENT 69 Y12-11p09.q1k chr15 62 188 254492 254615 F 127 86.61 1336 reject_low 1 ALIGNMENT 0 Y12-11p09.q1k chr15 189 878 254615 254614 F 690 0.00 1336 reject_low 1 ALIGNMENT 42 Y12-11p09.q1k chr04 181 82 309809 309908 C 100 81.00 1336 reject_low 2 ALIGNMENT 0 Y12-11p09.q1k chr12 62 146 806784 806783 F 85 0.00 1336 reject_low 3 ALIGNMENT 0 Y12-11p09.q1k chr04 878 182 309810 309809 C 697 0.00 1336 reject_low 2 ALIGNMENT 1013 Y12-11p09.p1k chr04 1214 18 233196 234413 C 1197 96.24 1232 accept 0 ALIGNMENT 962 Y12-11p09.q1k chr04 37 1175 230378 231530 F 1139 95.70 1336 accept 0 ALIGNMENT 0 Y12-11p09.q1k chr04 81 62 309909 309908 C 20 0.00 1336 reject_low 2 ALIGNMENT 0 Y12-11p10.p1k chr07 227 863 365671 365670 F 637 0.00 1234 reject_low 1 ALIGNMENT 55 Y12-11p10.p1k chr07 27 127 365430 365531 F 101 86.14 1234 reject_low 1 ALIGNMENT 0 Y12-11p10.p1k chr07 128 180 365532 365625 F 53 0.00 1234 reject_low 1 ALIGNMENT 1001 Y12-11p10.p1k chr16 1181 27 172519 173670 C 1155 97.14 1234 accept 0 ALIGNMENT 813 Y12-11p10.q1k chr16 35 991 169582 170556 F 957 96.45 1266 accept 0 ALIGNMENT 39 Y12-11p10.p1k chr07 181 226 365626 365671 F 46 95.65 1234 reject_low 1 ALIGNMENT 181 Y12-11p11.p1k chr07 1097 709 1080294 1080677 C 389 83.55 1267 reject_low 7 ALIGNMENT 182 Y12-11p11.p1k chr01 709 1090 1804 2179 F 382 83.77 1267 reject_low 11 ALIGNMENT 0 Y12-11p11.p1k chr12 723 62 95106 95105 C 662 0.00 1267 reject_low 3 ALIGNMENT 0 Y12-11p11.p1k chr12 62 711 13083 13082 F 650 0.00 1267 reject_low 15 ALIGNMENT 0 Y12-11p11.p1k chr01 62 708 1804 1803 F 647 0.00 1267 reject_low 11 ALIGNMENT 175 Y12-11p11.p1k chr02 1097 619 809033 809507 C 479 80.58 1267 reject_low 2 ALIGNMENT 187 Y12-11p11.p1k chr12 1090 712 1062906 1063278 C 379 84.43 1267 reject_low 8 ALIGNMENT 195 Y12-11p11.p1k chr12 1108 724 94719 95105 C 385 84.42 1267 reject_low 3 ALIGNMENT 0 Y12-11p11.p1k chr16 62 723 7948 7947 F 662 0.00 1267 reject_low 18 ALIGNMENT 166 Y12-11p11.p1k chr16 724 1090 7948 8317 F 367 82.56 1267 reject_low 18 ALIGNMENT 0 Y12-11p11.p1k chr15 62 708 11545 11544 F 647 0.00 1267 reject_low 10 ALIGNMENT 0 Y12-11p11.p1k chr03 723 62 308157 308156 C 662 0.00 1267 reject_low 20 ALIGNMENT 157 Y12-11p11.p1k chr03 1090 724 307787 308156 C 367 81.74 1267 reject_low 20 ALIGNMENT 0 Y12-11p11.p1k chr10 62 708 8773 8772 F 647 0.00 1267 reject_low 14 ALIGNMENT 0 Y12-11p11.p1k chr12 711 62 1063279 1063278 C 650 0.00 1267 reject_low 8 ALIGNMENT 0 Y12-11p11.p1k chr02 618 62 809508 809507 C 557 0.00 1267 reject_low 2 ALIGNMENT 188 Y12-11p11.p1k chr02 712 1090 7605 7978 F 379 84.43 1267 reject_low 6 ALIGNMENT 0 Y12-11p11.p1k chr07 62 708 6287 6286 F 647 0.00 1267 reject_low 5 ALIGNMENT 0 Y12-11p11.p1k chr08 62 708 11918 11917 F 647 0.00 1267 reject_low 12 ALIGNMENT 0 Y12-11p11.p1k chr09 723 62 434285 434284 C 662 0.00 1267 reject_low 13 ALIGNMENT 0 Y12-11p11.p1k chr07 708 62 1080678 1080677 C 647 0.00 1267 reject_low 7 ALIGNMENT 316 Y12-11p11.p1k chr01 710 1180 176651 177126 F 471 90.02 1267 reject_low 1 ALIGNMENT 163 Y12-11p11.p1k chr13 1090 724 922629 922998 C 367 82.29 1267 reject_low 19 ALIGNMENT 185 Y12-11p11.p1k chr15 709 1090 11545 11920 F 382 84.03 1267 reject_low 10 ALIGNMENT 0 Y12-11p11.p1k chr05 708 62 64094 64093 C 647 0.00 1267 reject_low 9 ALIGNMENT 184 Y12-11p11.p1k chr04 1097 709 1523214 1523597 C 389 83.80 1267 reject_low 4 ALIGNMENT 0 Y12-11p11.p1k chr13 723 62 922999 922998 C 662 0.00 1267 reject_low 19 ALIGNMENT 185 Y12-11p11.p1k chr05 1090 709 63718 64093 C 382 84.03 1267 reject_low 9 ALIGNMENT 992 Y12-11p11.q1k chr06 1208 41 102714 103879 C 1168 96.06 1354 accept 0 ALIGNMENT 0 Y12-11p11.p1k chr01 62 709 176651 176650 F 648 0.00 1267 reject_low 1 ALIGNMENT 173 Y12-11p11.p1k chr14 1090 712 781908 782280 C 379 83.11 1267 reject_low 16 ALIGNMENT 0 Y12-11p11.p1k chr04 708 62 1523598 1523597 C 647 0.00 1267 reject_low 4 ALIGNMENT 0 Y12-11p11.p1k chr02 62 711 7605 7604 F 650 0.00 1267 reject_low 6 ALIGNMENT 176 Y12-11p11.p1k chr12 724 1076 222701 223056 F 353 84.14 1267 reject_low 17 ALIGNMENT 985 Y12-11p11.p1k chr06 20 1216 98536 99737 F 1197 95.49 1267 accept 0 ALIGNMENT 188 Y12-11p11.p1k chr07 709 1090 6287 6662 F 382 84.29 1267 reject_low 5 ALIGNMENT 181 Y12-11p11.p1k chr09 1097 724 433907 434284 C 374 83.69 1267 reject_low 13 ALIGNMENT 173 Y12-11p11.p1k chr12 712 1090 13083 13455 F 379 83.11 1267 reject_low 15 ALIGNMENT 182 Y12-11p11.p1k chr08 709 1090 11918 12293 F 382 83.77 1267 reject_low 12 ALIGNMENT 0 Y12-11p11.p1k chr12 62 723 222701 222700 F 662 0.00 1267 reject_low 17 ALIGNMENT 179 Y12-11p11.p1k chr10 709 1090 8773 9148 F 382 83.51 1267 reject_low 14 ALIGNMENT 0 Y12-11p11.p1k chr14 711 62 782281 782280 C 650 0.00 1267 reject_low 16 ALIGNMENT 955 Y12-11p12.q1k chr16 39 1100 311870 312938 F 1062 97.74 1315 accept_chi 0 ALIGNMENT 338 Y12-11p12.p1k chr16 745 6 172870 173598 C 740 83.65 1216 accept_chi 1 ALIGNMENT 1022 Y12-11p13.q1k chr16 36 1178 644426 645585 F 1143 96.76 1312 accept 0 ALIGNMENT 1026 Y12-11p13.p1k chr16 1204 14 647089 648280 C 1191 96.22 1278 accept 0 ALIGNMENT 0 Y12-11p14.q1k chr12 150 866 490543 490542 F 717 0.00 1290 reject_low 2 ALIGNMENT 935 Y12-11p14.q1k chr12 46 1114 452473 453559 F 1069 96.45 1290 accept 0 ALIGNMENT 91 Y12-11p14.q1k chr12 46 149 490441 490543 F 104 97.12 1290 reject_low 2 ALIGNMENT 935 Y12-11p14.q1k chr12 46 1114 461610 462696 F 1069 96.45 1290 accept 1 ALIGNMENT 923 Y12-11p14.p1k chr12 1051 34 455756 456789 C 1018 97.35 1203 accept 0 ALIGNMENT 923 Y12-11p14.p1k chr12 1051 34 464893 465926 C 1018 97.35 1203 accept 1 ALIGNMENT 21 Y12-11p15.p1k chr07 593 624 158959 158990 F 32 90.62 1246 reject_low 5 ALIGNMENT 0 Y12-11p15.p1k chr07 62 592 158905 158904 F 531 0.00 1246 reject_low 3 ALIGNMENT 0 Y12-11p15.p1k chr15 625 881 236262 236261 F 257 0.00 1246 reject_low 4 ALIGNMENT 0 Y12-11p15.p1k chr15 62 604 235643 235642 F 543 0.00 1246 reject_low 6 ALIGNMENT 796 Y12-11p15.q1k chr14 45 989 340057 341012 F 945 95.98 1253 accept 0 ALIGNMENT 24 Y12-11p15.p1k chr15 593 624 236231 236262 F 32 93.75 1246 reject_low 4 ALIGNMENT 0 Y12-11p15.p1k chr07 62 592 158959 158958 F 531 0.00 1246 reject_low 5 ALIGNMENT 0 Y12-11p15.p1k chr07 625 881 158990 158989 F 257 0.00 1246 reject_low 5 ALIGNMENT 996 Y12-11p15.p1k chr14 1209 15 343398 344604 C 1195 95.82 1246 accept 0 ALIGNMENT 0 Y12-11p15.p1k chr05 232 881 405614 405613 F 650 0.00 1246 reject_low 2 ALIGNMENT 0 Y12-11p15.p1k chr15 628 881 235665 235664 F 254 0.00 1246 reject_low 6 ALIGNMENT 21 Y12-11p15.p1k chr07 593 637 158905 158949 F 45 84.44 1246 reject_low 3 ALIGNMENT 0 Y12-11p15.p1k chr08 881 525 373150 373149 C 357 0.00 1246 reject_low 1 ALIGNMENT 163 Y12-11p15.p1k chr08 524 15 373149 373660 C 510 78.43 1246 reject_low 1 ALIGNMENT 0 Y12-11p15.p1k chr15 62 592 236231 236230 F 531 0.00 1246 reject_low 4 ALIGNMENT 0 Y12-11p15.p1k chr07 638 881 158949 158948 F 244 0.00 1246 reject_low 3 ALIGNMENT 20 Y12-11p15.p1k chr15 605 627 235643 235665 F 23 100.00 1246 reject_low 6 ALIGNMENT 57 Y12-11p15.p1k chr05 25 231 405408 405614 F 207 77.29 1246 reject_low 2 ALIGNMENT 989 Y12-11p16.p1k chr05 18 1184 288627 289808 F 1167 96.14 1230 accept 0 ALIGNMENT 949 Y12-11p16.q1k chr05 1117 27 292004 293102 C 1091 96.24 1282 accept 0 ALIGNMENT 968 Y12-11p17.q1k chr12 1264 40 973917 975141 C 1225 94.78 1321 accept 0 ALIGNMENT 1001 Y12-11p17.p1k chr12 22 1203 970922 972116 F 1182 95.26 1237 accept 0 ALIGNMENT 0 Y12-11p18.p1k chr04 648 853 477232 477231 F 206 0.00 1218 reject_low 1 ALIGNMENT 973 Y12-11p18.p1k chr15 18 1140 450867 452002 F 1123 97.06 1218 accept 0 ALIGNMENT 0 Y12-11p18.p1k chr04 62 519 477108 477107 F 458 0.00 1218 reject_low 1 ALIGNMENT 89 Y12-11p18.p1k chr04 520 647 477108 477232 F 128 92.97 1218 reject_low 1 ALIGNMENT 1050 Y12-11p18.q1k chr15 1207 38 456192 457372 C 1170 97.44 1294 accept 0 ALIGNMENT 0 Y12-11p19.q1k chr14 220 851 525054 525053 F 632 0.00 1287 reject_low 20 ALIGNMENT 0 Y12-11p19.q1k chr03 108 62 168715 168714 C 47 0.00 1287 reject_low 18 ALIGNMENT 101 Y12-11p19.q1k chr05 208 53 498099 498254 C 156 90.38 1287 reject_low 16 ALIGNMENT 0 Y12-11p19.q1k chr03 209 851 169519 169518 F 643 0.00 1287 reject_low 12 ALIGNMENT 93 Y12-11p19.q1k chr11 219 51 457792 457960 C 169 86.98 1287 reject_low 17 ALIGNMENT 109 Y12-11p19.q1k chr12 219 53 475984 476150 C 167 90.42 1287 reject_low 4 ALIGNMENT 107 Y12-11p19.q1k chr03 51 218 151671 151838 F 168 89.88 1287 reject_low 6 ALIGNMENT 109 Y12-11p19.q1k chr01 219 53 165836 166002 C 167 90.42 1287 reject_low 3 ALIGNMENT 0 Y12-11p19.q1k chr12 851 220 475985 475984 C 632 0.00 1287 reject_low 4 ALIGNMENT 0 Y12-11p19.q1k chr16 220 851 56779 56778 F 632 0.00 1287 reject_low 5 ALIGNMENT 0 Y12-11p19.q1k chr07 851 209 823001 823000 C 643 0.00 1287 reject_low 10 ALIGNMENT 0 Y12-11p19.q1k chr07 240 851 402303 402302 F 612 0.00 1287 reject_low 1 ALIGNMENT 0 Y12-11p19.q1k chr03 208 851 149786 149785 F 644 0.00 1287 reject_low 21 ALIGNMENT 0 Y12-11p19.q1k chr08 851 220 91773 91772 C 632 0.00 1287 reject_low 23 ALIGNMENT 0 Y12-11p19.q1k chr16 209 851 844725 844724 F 643 0.00 1287 reject_low 14 ALIGNMENT 74 Y12-11p19.q1k chr03 219 109 168604 168714 C 111 90.09 1287 reject_low 18 ALIGNMENT 108 Y12-11p19.q1k chr07 51 239 402116 402303 F 189 87.83 1287 reject_low 1 ALIGNMENT 60 Y12-11p19.q1k chr08 219 109 91772 91881 C 111 86.49 1287 reject_low 23 ALIGNMENT 1021 Y12-11p19.p1k chr05 1268 17 315077 316343 C 1252 95.13 1268 accept 0 ALIGNMENT 104 Y12-11p19.q1k chr03 53 208 169364 169519 F 156 91.03 1287 reject_low 12 ALIGNMENT 0 Y12-11p19.q1k chr10 213 851 59767 59766 F 639 0.00 1287 reject_low 22 ALIGNMENT 0 Y12-11p19.q1k chr12 213 851 941504 941503 F 639 0.00 1287 reject_low 24 ALIGNMENT 65 Y12-11p19.q1k chr10 52 212 59613 59767 F 161 84.47 1287 reject_low 22 ALIGNMENT 0 Y12-11p19.q1k chr05 851 209 498100 498099 C 643 0.00 1287 reject_low 16 ALIGNMENT 73 Y12-11p19.q1k chr14 119 219 524954 525054 F 101 92.08 1287 reject_low 20 ALIGNMENT 109 Y12-11p19.q1k chr16 53 219 56613 56779 F 167 90.42 1287 reject_low 5 ALIGNMENT 0 Y12-11p19.q1k chr07 220 851 876275 876274 F 632 0.00 1287 reject_low 9 ALIGNMENT 104 Y12-11p19.q1k chr16 53 208 844570 844725 F 156 91.03 1287 reject_low 14 ALIGNMENT 99 Y12-11p19.q1k chr03 219 51 124140 124308 C 169 88.17 1287 reject_low 15 ALIGNMENT 0 Y12-11p19.q1k chr11 851 220 457793 457792 C 632 0.00 1287 reject_low 17 ALIGNMENT 0 Y12-11p19.q1k chr01 851 220 165837 165836 C 632 0.00 1287 reject_low 3 ALIGNMENT 103 Y12-11p19.q1k chr04 51 219 803054 803221 F 169 89.35 1287 reject_low 11 ALIGNMENT 104 Y12-11p19.q1k chr07 51 219 876106 876275 F 169 89.35 1287 reject_low 9 ALIGNMENT 106 Y12-11p19.q1k chr07 208 51 823000 823157 C 158 91.14 1287 reject_low 10 ALIGNMENT 107 Y12-11p19.q1k chr10 53 218 483711 483876 F 166 90.36 1287 reject_low 8 ALIGNMENT 108 Y12-11p19.q1k chr07 51 210 931845 932004 F 160 91.25 1287 reject_low 7 ALIGNMENT 0 Y12-11p19.q1k chr14 62 118 519388 519387 F 57 0.00 1287 reject_low 19 ALIGNMENT 0 Y12-11p19.q1k chr03 851 220 168605 168604 C 632 0.00 1287 reject_low 18 ALIGNMENT 0 Y12-11p19.q1k chr01 851 220 160249 160248 C 632 0.00 1287 reject_low 2 ALIGNMENT 73 Y12-11p19.q1k chr14 119 219 519388 519488 F 101 92.08 1287 reject_low 19 ALIGNMENT 0 Y12-11p19.q1k chr07 211 851 932004 932003 F 641 0.00 1287 reject_low 7 ALIGNMENT 1033 Y12-11p19.q1k chr05 30 1191 312249 313410 F 1162 96.56 1287 accept 0 ALIGNMENT 0 Y12-11p19.q1k chr13 851 209 378305 378304 C 643 0.00 1287 reject_low 13 ALIGNMENT 0 Y12-11p19.q1k chr08 108 62 91882 91881 C 47 0.00 1287 reject_low 23 ALIGNMENT 104 Y12-11p19.q1k chr13 208 53 378304 378459 C 156 91.03 1287 reject_low 13 ALIGNMENT 0 Y12-11p19.q1k chr14 220 851 519488 519487 F 632 0.00 1287 reject_low 19 ALIGNMENT 48 Y12-11p19.q1k chr12 109 212 941403 941504 F 104 84.62 1287 reject_low 24 ALIGNMENT 0 Y12-11p19.q1k chr04 220 851 803221 803220 F 632 0.00 1287 reject_low 11 ALIGNMENT 0 Y12-11p19.q1k chr03 851 220 124141 124140 C 632 0.00 1287 reject_low 15 ALIGNMENT 109 Y12-11p19.q1k chr01 219 53 160248 160414 C 167 90.42 1287 reject_low 2 ALIGNMENT 0 Y12-11p19.q1k chr14 62 118 524954 524953 F 57 0.00 1287 reject_low 20 ALIGNMENT 0 Y12-11p19.q1k chr10 219 851 483876 483875 F 633 0.00 1287 reject_low 8 ALIGNMENT 0 Y12-11p19.q1k chr12 62 108 941403 941402 F 47 0.00 1287 reject_low 24 ALIGNMENT 0 Y12-11p19.q1k chr03 219 851 151838 151837 F 633 0.00 1287 reject_low 6 ALIGNMENT 72 Y12-11p19.q1k chr03 84 207 149663 149786 F 124 87.90 1287 reject_low 21 ALIGNMENT 0 Y12-11p19.q1k chr03 62 83 149663 149662 F 22 0.00 1287 reject_low 21 ALIGNMENT 1005 Y12-11p20.q1k chr02 1193 36 55362 56519 C 1158 96.80 1291 accept 0 ALIGNMENT 1057 Y12-11p20.p1k chr02 12 1208 51427 52632 F 1197 97.08 1240 accept 0 ALIGNMENT 992 Y12-11p21.p1k chr14 21 1201 436596 437782 F 1181 96.10 1276 accept 0 ALIGNMENT 950 Y12-11p21.q1k chr14 1103 37 440090 441155 C 1067 96.72 1300 accept 0 ALIGNMENT 935 Y12-11p23.q1k chr04 1164 28 971395 972529 C 1137 95.43 1244 accept 0 ALIGNMENT 939 Y12-11p23.p1k chr04 20 1196 967164 968321 F 1177 95.50 1238 accept 0 ALIGNMENT 905 Y12-11p24.q1k chr02 1092 32 520207 521252 C 1061 97.36 1280 accept 0 ALIGNMENT 899 Y12-11p24.p1k chr02 1 1135 515806 516925 F 1135 94.54 1180 accept 0 ALIGNMENT 758 Y12-12a01.q1k chr07 36 1125 153558 154647 F 1090 91.28 1322 accept 0 ALIGNMENT 999 Y12-12a02.q1k chr16 1321 33 35778 37067 C 1289 94.49 1328 accept 0 ALIGNMENT 611 Y12-12a02.p1k chr16 18 994 31267 32238 F 977 88.23 1411 accept 0 ALIGNMENT 0 Y12-12a03.p1k chr13 249 160 608911 608910 C 90 0.00 1442 reject_low 5 ALIGNMENT 0 Y12-12a03.p1k chr13 445 89 609659 609676 C 357 0.00 1442 reject_low 12 ALIGNMENT 0 Y12-12a03.p1k chr13 632 558 609077 609544 C 75 0.00 1442 reject_low 12 ALIGNMENT 1007 Y12-12a03.q1k chr13 37 1199 603901 605056 F 1163 96.65 1261 reject_bad_break 0 ALIGNMENT 0 Y12-12a03.p1k chr13 762 710 609619 609624 C 53 0.00 1442 reject_low 6 ALIGNMENT 138 Y12-12a03.p1k chr13 216 35 608925 609106 C 182 92.86 1442 reject_low 3 ALIGNMENT 0 Y12-12a03.p1k chr13 596 543 609737 609772 C 54 0.00 1442 reject_low 6 ALIGNMENT 0 Y12-12a03.p1k chr13 632 62 609539 609538 C 571 0.00 1442 reject_low 7 ALIGNMENT 158 Y12-12a03.p1k chr13 621 112 608938 609410 C 510 80.98 1442 reject_low 1 ALIGNMENT 0 Y12-12a03.p1k chr13 442 312 609740 609759 C 131 0.00 1442 reject_low 10 ALIGNMENT 0 Y12-12a03.p1k chr13 263 214 609106 609152 C 50 0.00 1442 reject_low 11 ALIGNMENT 124 Y12-12a03.p1k chr13 288 25 609003 609269 C 264 83.33 1442 reject_low 2 ALIGNMENT 0 Y12-12a03.p1k chr13 249 217 608926 608925 C 33 0.00 1442 reject_low 3 ALIGNMENT 40 Y12-12a03.p1k chr13 731 633 608979 609076 C 99 81.82 1442 reject_low 11,12 ALIGNMENT 49 Y12-12a03.p1k chr13 709 597 609625 609736 C 113 82.30 1442 reject_low 6 ALIGNMENT 49 Y12-12a03.p1k chr13 709 597 609232 609343 C 113 82.30 1442 reject_bad_break 0 ALIGNMENT 72 Y12-12a03.p1k chr13 213 25 609153 609347 C 189 80.95 1442 reject_low 11 ALIGNMENT 22 Y12-12a03.p1k chr13 316 264 609053 609105 C 53 81.13 1442 reject_low 11 ALIGNMENT 248 Y12-12a03.p1k chr13 586 89 609330 609835 C 498 84.54 1442 reject_bad_break 0 ALIGNMENT 0 Y12-12a03.p1k chr13 718 543 609742 609772 C 176 0.00 1442 reject_low 9 ALIGNMENT 0 Y12-12a03.p1k chr13 88 62 609836 609835 C 27 0.00 1442 reject_bad_break 0 ALIGNMENT 67 Y12-12a03.p1k chr13 708 368 609545 609892 C 341 74.78 1442 reject_low 4 ALIGNMENT 0 Y12-12a03.p1k chr13 111 109 609411 609578 C 3 0.00 1442 reject_low 1 ALIGNMENT 0 Y12-12a03.p1k chr13 632 563 609434 609620 C 70 0.00 1442 reject_low 10 ALIGNMENT 20 Y12-12a03.p1k chr13 704 633 609468 609538 C 72 77.78 1442 reject_low 7 ALIGNMENT 23 Y12-12a03.p1k chr13 70 29 608945 608986 C 42 85.71 1442 reject_low 8 ALIGNMENT 0 Y12-12a03.p1k chr13 367 62 609893 609892 C 306 0.00 1442 reject_low 4 ALIGNMENT 0 Y12-12a03.p1k chr13 454 62 609857 609856 C 393 0.00 1442 reject_low 6,9 ALIGNMENT 68 Y12-12a03.p1k chr13 785 633 609281 609433 C 153 83.01 1442 reject_low 10 ALIGNMENT 0 Y12-12a03.p1k chr13 263 62 609808 609807 C 202 0.00 1442 reject_low 10 ALIGNMENT 49 Y12-12a03.p1k chr13 159 25 608910 609038 C 135 82.22 1442 reject_low 5 ALIGNMENT 0 Y12-12a03.p1k chr13 249 71 608946 608945 C 179 0.00 1442 reject_low 8 ALIGNMENT 32 Y12-12a03.p1k chr13 785 719 609674 609741 C 67 83.58 1442 reject_low 9 ALIGNMENT 23 Y12-12a03.p1k chr13 311 264 609760 609807 C 48 83.33 1442 reject_low 10 ALIGNMENT 48 Y12-12a03.p1k chr13 562 443 609621 609739 C 120 80.83 1442 reject_low 10 ALIGNMENT 30 Y12-12a03.p1k chr13 542 455 609773 609856 C 88 80.68 1442 reject_low 6,9 ALIGNMENT 41 Y12-12a03.p1k chr13 88 25 609677 609740 C 64 89.06 1442 reject_low 12 ALIGNMENT 0 Y12-12a03.p1k chr13 596 587 609344 609329 C 10 0.00 1442 reject_bad_break 0 ALIGNMENT 70 Y12-12a03.p1k chr13 108 25 609579 609662 C 84 95.24 1442 reject_low 1 ALIGNMENT 47 Y12-12a03.p1k chr13 557 446 609545 609658 C 112 82.14 1442 reject_low 12 ALIGNMENT 0 Y12-12a03.p1k chr13 632 317 609077 609052 C 316 0.00 1442 reject_low 11 ALIGNMENT 32 Y12-12a03.p1k chr13 869 763 609515 609618 C 107 80.37 1442 reject_low 6 ALIGNMENT 905 Y12-12a04.q1k chr11 36 1208 498903 500079 F 1173 93.69 1251 accept 0 ALIGNMENT 1124 Y12-12a04.p1k chr11 1297 19 503839 505129 C 1279 97.26 1374 accept 0 ALIGNMENT 899 Y12-12a05.q1k chr16 1099 36 800086 801170 C 1064 96.05 1300 accept 0 ALIGNMENT 291 Y12-12a05.p1k chr16 25 402 795362 795739 F 378 92.86 1516 accept 0 ALIGNMENT 250 Y12-12a05.p1k chr07 51 402 727361 727711 F 352 90.91 1516 reject_low 1 ALIGNMENT 1019 Y12-12a06.p1k chr04 23 1186 943934 945103 F 1164 96.91 1346 accept 0 ALIGNMENT 966 Y12-12a06.q1k chr04 1126 34 947552 948650 C 1093 96.71 1334 accept 0 ALIGNMENT 99 Y12-12a07.p1k chr10 28 268 477090 477332 F 241 81.33 1449 ambiguous_trans 10 ALIGNMENT 100 Y12-12a07.p1k chr04 268 32 987685 987922 C 237 81.43 1449 ambiguous_trans 16 ALIGNMENT 82 Y12-12a07.p1k chr02 32 268 34398 34635 F 237 78.90 1449 ambiguous_trans 25 ALIGNMENT 980 Y12-12a07.q1k chr09 1236 36 208867 210076 C 1201 95.00 1367 ambiguous_trans 1 ALIGNMENT 136 Y12-12a07.p1k chr14 268 32 97574 97811 C 237 86.50 1449 ambiguous_trans 9 ALIGNMENT 141 Y12-12a07.p1k chr02 28 268 225749 225991 F 241 87.14 1449 ambiguous_trans 2 ALIGNMENT 136 Y12-12a07.p1k chr13 268 32 373666 373903 C 237 86.50 1449 ambiguous_trans 8 ALIGNMENT 100 Y12-12a07.p1k chr12 268 32 476944 477181 C 237 81.43 1449 ambiguous_trans 20 ALIGNMENT 100 Y12-12a07.p1k chr07 268 32 562813 563050 C 237 81.43 1449 ambiguous_trans 18 ALIGNMENT 136 Y12-12a07.p1k chr12 268 32 216051 216288 C 237 86.50 1449 ambiguous_trans_ua 7 ALIGNMENT 141 Y12-12a07.p1k chr07 28 268 540477 540719 F 241 87.14 1449 ambiguous_trans 3 ALIGNMENT 99 Y12-12a07.p1k chr16 28 268 61164 61406 F 241 81.33 1449 ambiguous_trans 14 ALIGNMENT 99 Y12-12a07.p1k chr16 28 268 849124 849366 F 241 81.33 1449 ambiguous_trans 15 ALIGNMENT 99 Y12-12a07.p1k chr13 28 268 188877 189119 F 241 81.33 1449 ambiguous_trans 12 ALIGNMENT 980 Y12-12a07.q1k chr07 1250 36 710756 711981 C 1215 94.65 1367 ambiguous_trans 0 ALIGNMENT 100 Y12-12a07.p1k chr08 268 32 544574 544811 C 237 81.43 1449 ambiguous_trans 19 ALIGNMENT 99 Y12-12a07.p1k chr13 28 268 201044 201286 F 241 81.33 1449 ambiguous_trans 13 ALIGNMENT 99 Y12-12a07.p1k chr12 28 268 655537 655779 F 241 81.33 1449 ambiguous_trans 11 ALIGNMENT 94 Y12-12a07.p1k chr01 268 32 161208 161445 C 237 80.59 1449 ambiguous_trans 23 ALIGNMENT 142 Y12-12a07.p1k chr13 268 32 357968 358205 C 237 87.34 1449 ambiguous_trans 4 ALIGNMENT 100 Y12-12a07.p1k chr05 268 32 444362 444599 C 237 81.43 1449 ambiguous_trans 17 ALIGNMENT 88 Y12-12a07.p1k chr04 268 32 879264 879501 C 237 79.75 1449 ambiguous_trans 24 ALIGNMENT 100 Y12-12a07.p1k chr16 268 32 805607 805844 C 237 81.43 1449 ambiguous_trans 21 ALIGNMENT 135 Y12-12a07.p1k chr10 28 268 482674 482916 F 241 86.31 1449 ambiguous_trans 5 ALIGNMENT 79 Y12-12a07.p1k chr04 268 32 646463 646700 C 237 78.48 1449 ambiguous_trans 26 ALIGNMENT 100 Y12-12a07.p1k chr16 268 32 851595 851832 C 237 81.43 1449 ambiguous_trans 22 ALIGNMENT 136 Y12-12a07.p1k chr05 268 32 493461 493698 C 237 86.50 1449 ambiguous_trans 6 ALIGNMENT 952 Y12-12a08.q1k chr11 1188 34 453298 454462 C 1155 94.98 1366 accept 0 ALIGNMENT 578 Y12-12a08.p1k chr11 20 860 449905 450740 F 841 90.84 1442 accept 0 ALIGNMENT 1045 Y12-12a09.q1k chr02 36 1312 705801 707070 F 1277 95.07 1320 accept 0 ALIGNMENT 584 Y12-12a09.p1k chr02 949 19 710392 711312 C 931 89.37 1406 accept 0 ALIGNMENT 994 Y12-12a10.q1k chr03 25 1261 248853 250120 F 1237 94.26 1307 accept 0 ALIGNMENT 1031 Y12-12a10.p1k chr03 1196 30 250803 251955 C 1167 97.43 1442 accept 0 ALIGNMENT 261 Y12-12a11.p1k chr11 28 346 350810 351127 F 319 94.67 1440 accept 0 ALIGNMENT 969 Y12-12a11.q1k chr11 1238 31 354136 355327 C 1208 94.87 1364 accept 0 ALIGNMENT 1013 Y12-12a12.p1k chr13 1187 23 402126 403300 C 1165 97.25 1471 accept 0 ALIGNMENT 1045 Y12-12a12.q1k chr13 32 1201 397125 398306 F 1170 96.84 1354 accept 0 ALIGNMENT 936 Y12-12a13.q1k chr10 1172 41 331448 332590 C 1132 95.41 1351 accept_chi 0 ALIGNMENT 403 Y12-12a13.p1k chr12 766 137 332338 332965 C 630 88.41 1351 accept_chi 1 ALIGNMENT 1029 Y12-12a14.p1k chr01 1203 24 153978 155156 C 1180 96.69 1431 accept 0 ALIGNMENT 985 Y12-12a14.q1k chr01 34 1258 150640 151881 F 1225 95.43 1375 accept 0 ALIGNMENT 1026 Y12-12a15.q1k chr04 30 1173 265839 266994 F 1144 97.38 1173 accept 0 ALIGNMENT 537 Y12-12a15.p1k chr04 850 20 270116 270944 C 831 89.29 1344 accept 0 ALIGNMENT 977 Y12-12a16.p1k chr07 1187 26 305786 306962 C 1162 95.70 1357 accept 0 ALIGNMENT 995 Y12-12a16.q1k chr07 34 1190 300976 302129 F 1157 96.63 1194 accept 0 ALIGNMENT 941 Y12-12a17.p1k chr04 1158 19 1329706 1330860 C 1140 95.61 1332 accept 0 ALIGNMENT 1040 Y12-12a17.q1k chr04 29 1248 1325498 1326730 F 1220 95.90 1333 accept 0 ALIGNMENT 918 Y12-12a18.q1k chr14 36 1090 470147 471211 F 1055 96.40 1316 accept 0 ALIGNMENT 1016 Y12-12a18.p1k chr14 1344 20 473865 475199 C 1325 94.04 1384 accept 0 ALIGNMENT 118 Y12-12a21.q1k chr11 572 233 457781 458111 C 340 82.06 1161 reject_low 5 ALIGNMENT 0 Y12-12a21.q1k chr07 881 551 823001 823000 C 331 0.00 1161 reject_low 4 ALIGNMENT 0 Y12-12a21.q1k chr04 881 735 1095794 1095793 C 147 0.00 1161 reject_low 23 ALIGNMENT 0 Y12-12a21.q1k chr11 881 573 457782 457781 C 309 0.00 1161 reject_low 5 ALIGNMENT 0 Y12-12a21.q1k chr12 735 881 215387 215386 F 147 0.00 1161 reject_low 25 ALIGNMENT 0 Y12-12a21.q1k chr03 551 881 169519 169518 F 331 0.00 1161 reject_low 9 ALIGNMENT 0 Y12-12a21.q1k chr08 62 246 133690 133689 F 185 0.00 1161 reject_low 38 ALIGNMENT 0 Y12-12a21.q1k chr15 881 735 117734 117733 C 147 0.00 1161 reject_low 26 ALIGNMENT 0 Y12-12a21.q1k chr07 735 881 823280 823279 F 147 0.00 1161 reject_low 17 ALIGNMENT 0 Y12-12a21.q1k chr14 881 717 519214 519213 C 165 0.00 1161 reject_low 31 ALIGNMENT 0 Y12-12a21.q1k chr14 571 881 519497 519496 F 311 0.00 1161 reject_low 28 ALIGNMENT 0 Y12-12a21.q1k chr05 881 572 443393 443392 C 310 0.00 1161 reject_low 14 ALIGNMENT 115 Y12-12a21.q1k chr04 233 550 1095765 1096079 F 318 82.39 1161 reject_low 10 ALIGNMENT 76 Y12-12a21.q1k chr07 929 854 707110 707185 C 76 100.00 1161 reject_low 3 ALIGNMENT 0 Y12-12a21.q1k chr15 608 62 117862 117861 C 547 0.00 1161 reject_low 26 ALIGNMENT 115 Y12-12a21.q1k chr03 233 550 169205 169519 F 318 82.39 1161 reject_low 9 ALIGNMENT 0 Y12-12a21.q1k chr05 232 62 498414 498413 C 171 0.00 1161 reject_low 13 ALIGNMENT 0 Y12-12a21.q1k chr16 232 62 850960 850959 C 171 0.00 1161 reject_low 37 ALIGNMENT 0 Y12-12a21.q1k chr05 232 62 443727 443726 C 171 0.00 1161 reject_low 14 ALIGNMENT 112 Y12-12a21.q1k chr08 247 570 133690 134002 F 324 82.41 1161 reject_low 38 ALIGNMENT 0 Y12-12a21.q1k chr08 735 881 543910 543909 F 147 0.00 1161 reject_low 18 ALIGNMENT 44 Y12-12a21.q1k chr10 556 463 354774 354865 C 94 87.23 1161 reject_low 35 ALIGNMENT 0 Y12-12a21.q1k chr01 594 62 189593 189592 C 533 0.00 1161 reject_low 16 ALIGNMENT 37 Y12-12a21.q1k chr08 610 734 543784 543910 F 125 80.80 1161 reject_low 18 ALIGNMENT 120 Y12-12a21.q1k chr07 233 571 401965 402294 F 339 82.30 1161 reject_low 6 ALIGNMENT 124 Y12-12a21.q1k chr16 570 233 850625 850959 C 338 82.54 1161 reject_low 37 ALIGNMENT 0 Y12-12a21.q1k chr08 62 608 91937 91936 F 547 0.00 1161 reject_low 30 ALIGNMENT 0 Y12-12a21.q1k chr14 608 62 519323 519322 C 547 0.00 1161 reject_low 31 ALIGNMENT 0 Y12-12a21.q1k chr08 881 560 91775 91774 C 322 0.00 1161 reject_low 34 ALIGNMENT 31 Y12-12a21.q1k chr16 734 609 844439 844567 C 126 79.37 1161 reject_low 37 ALIGNMENT 0 Y12-12a21.q1k chr07 572 881 402294 402293 F 310 0.00 1161 reject_low 6 ALIGNMENT 123 Y12-12a21.q1k chr08 550 233 543630 543938 C 318 83.33 1161 reject_low 7 ALIGNMENT 0 Y12-12a21.q1k chr03 608 62 169362 169361 C 547 0.00 1161 reject_low 22 ALIGNMENT 79 Y12-12a21.q1k chr02 937 853 642993 643076 C 85 98.82 1161 reject_low 2 ALIGNMENT 0 Y12-12a21.q1k chr12 881 551 215102 215101 C 331 0.00 1161 reject_low 11 ALIGNMENT 0 Y12-12a21.q1k chr05 62 608 443571 443570 F 547 0.00 1161 reject_low 29 ALIGNMENT 0 Y12-12a21.q1k chr05 881 551 498100 498099 C 331 0.00 1161 reject_low 13 ALIGNMENT 112 Y12-12a21.q1k chr05 550 233 498099 498413 C 318 82.08 1161 reject_low 13 ALIGNMENT 0 Y12-12a21.q1k chr01 62 232 183139 183138 F 171 0.00 1161 reject_low 15 ALIGNMENT 32 Y12-12a21.q1k chr14 716 609 524779 524888 C 108 82.41 1161 reject_low 32 ALIGNMENT 0 Y12-12a21.q1k chr08 717 881 134166 134165 F 165 0.00 1161 reject_low 38 ALIGNMENT 32 Y12-12a21.q1k chr05 609 716 443571 443680 F 108 82.41 1161 reject_low 29 ALIGNMENT 31 Y12-12a21.q1k chr15 734 609 117733 117861 C 126 79.37 1161 reject_low 26 ALIGNMENT 0 Y12-12a21.q1k chr07 881 735 401994 401993 C 147 0.00 1161 reject_low 21 ALIGNMENT 0 Y12-12a21.q1k chr01 609 62 183294 183293 C 548 0.00 1161 reject_low 27 ALIGNMENT 0 Y12-12a21.q1k chr10 881 567 354455 354454 C 315 0.00 1161 reject_low 8 ALIGNMENT 0 Y12-12a21.q1k chr10 251 62 354760 354759 C 190 0.00 1161 reject_low 8 ALIGNMENT 0 Y12-12a21.q1k chr05 735 881 498385 498384 F 147 0.00 1161 reject_low 24 ALIGNMENT 0 Y12-12a21.q1k chr07 62 609 823154 823153 F 548 0.00 1161 reject_low 17 ALIGNMENT 0 Y12-12a21.q1k chr15 62 232 117705 117704 F 171 0.00 1161 reject_low 12 ALIGNMENT 115 Y12-12a21.q1k chr16 233 550 844411 844725 F 318 82.39 1161 reject_low 39 ALIGNMENT 31 Y12-12a21.q1k chr01 734 610 183167 183293 C 125 79.20 1161 reject_low 27 ALIGNMENT 35 Y12-12a21.q1k chr08 610 716 134059 134166 F 107 82.24 1161 reject_low 38 ALIGNMENT 0 Y12-12a21.q1k chr11 232 62 458112 458111 C 171 0.00 1161 reject_low 5 ALIGNMENT 0 Y12-12a21.q1k chr12 62 608 215259 215258 F 547 0.00 1161 reject_low 25 ALIGNMENT 52 Y12-12a21.q1k chr08 559 233 91774 92092 C 327 76.15 1161 reject_low 34 ALIGNMENT 0 Y12-12a21.q1k chr10 462 62 354866 354865 C 401 0.00 1161 reject_low 35 ALIGNMENT 0 Y12-12a21.q1k chr16 881 735 844440 844439 C 147 0.00 1161 reject_low 37 ALIGNMENT 0 Y12-12a21.q1k chr07 853 62 707186 707185 C 792 0.00 1161 reject_low 3 ALIGNMENT 0 Y12-12a21.q1k chr10 881 557 354775 354774 C 325 0.00 1161 reject_low 35 ALIGNMENT 31 Y12-12a21.q1k chr08 724 610 133713 133828 C 115 80.00 1161 reject_low 33 ALIGNMENT 0 Y12-12a21.q1k chr01 881 735 183168 183167 C 147 0.00 1161 reject_low 27 ALIGNMENT 0 Y12-12a21.q1k chr07 609 62 402120 402119 C 548 0.00 1161 reject_low 21 ALIGNMENT 29 Y12-12a21.q1k chr01 716 595 189469 189592 C 122 80.33 1161 reject_low 16 ALIGNMENT 990 Y12-12a21.q1k chr16 1161 35 435656 436783 C 1127 97.78 1161 accept 0 ALIGNMENT 115 Y12-12a21.q1k chr12 550 233 215101 215415 C 318 82.39 1161 reject_low 11 ALIGNMENT 92 Y12-12a21.q1k chr01 233 571 183139 183469 F 339 79.94 1161 reject_low 15 ALIGNMENT 0 Y12-12a21.q1k chr16 551 608 844726 850802 F 58 0.00 1161 reject_low 39 ALIGNMENT 0 Y12-12a21.q1k chr15 551 881 118019 118018 F 331 0.00 1161 reject_low 12 ALIGNMENT 85 Y12-12a21.q1k chr16 936 851 775754 775839 C 86 100.00 1161 reject_low 1 ALIGNMENT 0 Y12-12a21.q1k chr11 62 609 457957 457956 F 548 0.00 1161 reject_low 19 ALIGNMENT 0 Y12-12a21.q1k chr14 608 62 524889 524888 C 547 0.00 1161 reject_low 32 ALIGNMENT 34 Y12-12a21.q1k chr07 734 610 401993 402119 C 125 80.00 1161 reject_low 21 ALIGNMENT 0 Y12-12a21.q1k chr08 232 62 543939 543938 C 171 0.00 1161 reject_low 7 ALIGNMENT 0 Y12-12a21.q1k chr08 571 609 134003 134058 F 39 0.00 1161 reject_low 38 ALIGNMENT 0 Y12-12a21.q1k chr11 735 881 458083 458082 F 147 0.00 1161 reject_low 19 ALIGNMENT 64 Y12-12a21.q1k chr14 233 571 524733 525064 F 339 76.99 1161 reject_low 20 ALIGNMENT 0 Y12-12a21.q1k chr08 881 725 133714 133713 C 157 0.00 1161 reject_low 33 ALIGNMENT 58 Y12-12a21.q1k chr14 278 570 519213 519497 F 293 77.47 1161 reject_low 28 ALIGNMENT 31 Y12-12a21.q1k chr16 609 734 850803 850931 F 126 79.37 1161 reject_low 39 ALIGNMENT 32 Y12-12a21.q1k chr08 609 716 91937 92046 F 108 82.41 1161 reject_low 30 ALIGNMENT 0 Y12-12a21.q1k chr01 559 881 189739 189738 F 323 0.00 1161 reject_low 36 ALIGNMENT 31 Y12-12a21.q1k chr04 734 609 1095793 1095921 C 126 79.37 1161 reject_low 23 ALIGNMENT 0 Y12-12a21.q1k chr14 881 717 524780 524779 C 165 0.00 1161 reject_low 32 ALIGNMENT 102 Y12-12a21.q1k chr05 571 233 443392 443726 C 339 80.24 1161 reject_low 14 ALIGNMENT 31 Y12-12a21.q1k chr03 734 609 169233 169361 C 126 79.37 1161 reject_low 22 ALIGNMENT 0 Y12-12a21.q1k chr01 62 232 189423 189422 F 171 0.00 1161 reject_low 36 ALIGNMENT 0 Y12-12a21.q1k chr16 735 881 850931 850930 F 147 0.00 1161 reject_low 39 ALIGNMENT 0 Y12-12a21.q1k chr16 608 571 844568 850624 C 38 0.00 1161 reject_low 37 ALIGNMENT 0 Y12-12a21.q1k chr03 881 735 169234 169233 C 147 0.00 1161 reject_low 22 ALIGNMENT 0 Y12-12a21.q1k chr12 232 62 215416 215415 C 171 0.00 1161 reject_low 11 ALIGNMENT 0 Y12-12a21.q1k chr08 609 62 133829 133828 C 548 0.00 1161 reject_low 33 ALIGNMENT 126 Y12-12a21.q1k chr07 550 233 823000 823308 C 318 83.65 1161 reject_low 4 ALIGNMENT 0 Y12-12a21.q1k chr14 62 277 519213 519212 F 216 0.00 1161 reject_low 28 ALIGNMENT 0 Y12-12a21.q1k chr05 62 608 498257 498256 F 547 0.00 1161 reject_low 24 ALIGNMENT 0 Y12-12a21.q1k chr14 572 881 525064 525063 F 310 0.00 1161 reject_low 20 ALIGNMENT 37 Y12-12a21.q1k chr11 610 734 457957 458083 F 125 80.80 1161 reject_low 19 ALIGNMENT 0 Y12-12a21.q1k chr16 850 62 775840 775839 C 789 0.00 1161 reject_low 1 ALIGNMENT 0 Y12-12a21.q1k chr14 62 232 524733 524732 F 171 0.00 1161 reject_low 20 ALIGNMENT 32 Y12-12a21.q1k chr14 716 609 519213 519322 C 108 82.41 1161 reject_low 31 ALIGNMENT 31 Y12-12a21.q1k chr12 609 734 215259 215387 F 126 79.37 1161 reject_low 25 ALIGNMENT 0 Y12-12a21.q1k chr08 881 551 543631 543630 C 331 0.00 1161 reject_low 7 ALIGNMENT 31 Y12-12a21.q1k chr05 609 734 498257 498385 F 126 79.37 1161 reject_low 24 ALIGNMENT 0 Y12-12a21.q1k chr01 881 717 189470 189469 C 165 0.00 1161 reject_low 16 ALIGNMENT 1048 Y12-12a21.p1k chr16 23 1242 432507 433739 F 1220 96.23 1314 accept 0 ALIGNMENT 0 Y12-12a21.q1k chr07 232 62 823309 823308 C 171 0.00 1161 reject_low 4 ALIGNMENT 0 Y12-12a21.q1k chr02 852 62 643077 643076 C 791 0.00 1161 reject_low 2 ALIGNMENT 115 Y12-12a21.q1k chr15 233 550 117705 118019 F 318 82.39 1161 reject_low 12 ALIGNMENT 0 Y12-12a21.q1k chr08 62 609 543784 543783 F 548 0.00 1161 reject_low 18 ALIGNMENT 37 Y12-12a21.q1k chr07 610 734 823154 823280 F 125 80.80 1161 reject_low 17 ALIGNMENT 0 Y12-12a21.q1k chr04 62 232 1095765 1095764 F 171 0.00 1161 reject_low 10 ALIGNMENT 0 Y12-12a21.q1k chr03 62 232 169205 169204 F 171 0.00 1161 reject_low 9 ALIGNMENT 0 Y12-12a21.q1k chr08 717 881 92046 92045 F 165 0.00 1161 reject_low 30 ALIGNMENT 0 Y12-12a21.q1k chr05 717 881 443680 443679 F 165 0.00 1161 reject_low 29 ALIGNMENT 0 Y12-12a21.q1k chr04 608 62 1095922 1095921 C 547 0.00 1161 reject_low 23 ALIGNMENT 116 Y12-12a21.q1k chr10 566 252 354454 354759 C 315 82.86 1161 reject_low 8 ALIGNMENT 0 Y12-12a21.q1k chr07 62 232 401965 401964 F 171 0.00 1161 reject_low 6 ALIGNMENT 37 Y12-12a21.q1k chr01 233 558 189423 189739 F 326 75.15 1161 reject_low 36 ALIGNMENT 0 Y12-12a21.q1k chr04 551 881 1096079 1096078 F 331 0.00 1161 reject_low 10 ALIGNMENT 0 Y12-12a21.q1k chr01 572 881 183469 183468 F 310 0.00 1161 reject_low 15 ALIGNMENT 0 Y12-12a21.q1k chr16 62 232 844411 844410 F 171 0.00 1161 reject_low 39 ALIGNMENT 0 Y12-12a21.q1k chr08 232 62 92093 92092 C 171 0.00 1161 reject_low 34 ALIGNMENT 937 Y12-12a23.p1k chr03 33 1187 187364 188527 F 1155 95.76 1284 accept 0 ALIGNMENT 979 Y12-12a23.q1k chr03 1137 35 190787 191888 C 1103 97.55 1144 accept 0 ALIGNMENT 0 Y12-12b01.p1k chr08 62 771 550424 550423 F 710 0.00 1434 accept_tel 0 ALIGNMENT 0 Y12-12b01.q1k chr13 576 896 163272 163271 F 321 0.00 1306 reject_low 3 ALIGNMENT 1011 Y12-12b01.q1k chr08 1230 27 554223 555437 C 1204 95.35 1306 accept_tel 0 ALIGNMENT 924 Y12-12b01.q1k chr01 1243 27 227546 228774 C 1217 92.77 1306 reject_low 1 ALIGNMENT 575 Y12-12b01.q1k chr12 1096 27 1002522 1003594 C 1070 85.05 1306 reject_low 2 ALIGNMENT 76 Y12-12b01.p1k chr08 772 944 550424 550598 F 173 82.66 1434 accept_tel 0 ALIGNMENT 211 Y12-12b01.q1k chr13 27 575 162724 163272 F 549 79.78 1306 reject_low 3 ALIGNMENT 996 Y12-12b02.p1k chr04 1213 20 947291 948490 C 1194 95.39 1391 accept 0 ALIGNMENT 976 Y12-12b02.q1k chr04 30 1197 942210 943392 F 1168 95.72 1271 accept 0 ALIGNMENT 1018 Y12-12b03.q1k chr09 38 1231 83009 84211 F 1194 95.56 1271 accept 0 ALIGNMENT 912 Y12-12b03.p1k chr09 1077 20 87588 88664 C 1058 97.16 1278 accept 0 ALIGNMENT 1006 Y12-12b04.q1k chr04 32 1266 385527 386763 F 1235 95.06 1266 accept 0 ALIGNMENT 1019 Y12-12b04.p1k chr04 1268 19 388862 390104 C 1250 95.68 1407 accept 0 ALIGNMENT 986 Y12-12b05.p1k chr10 23 1184 681049 682226 F 1162 95.96 1347 accept 0 ALIGNMENT 867 Y12-12b05.q1k chr10 1015 34 685901 686898 C 982 97.76 1294 accept 0 ALIGNMENT 0 Y12-12b06.p1k chr08 666 62 365414 365413 C 605 0.00 1395 reject_low 3 ALIGNMENT 0 Y12-12b06.p1k chr15 668 62 428044 428043 C 607 0.00 1395 reject_low 5 ALIGNMENT 0 Y12-12b06.p1k chr11 666 62 576154 576153 C 605 0.00 1395 reject_low 4 ALIGNMENT 0 Y12-12b06.p1k chr15 874 704 428010 428009 C 171 0.00 1395 reject_low 5 ALIGNMENT 0 Y12-12b06.p1k chr15 874 701 427947 427946 C 174 0.00 1395 reject_low 2 ALIGNMENT 0 Y12-12b06.p1k chr08 874 705 365377 365376 C 170 0.00 1395 reject_low 3 ALIGNMENT 0 Y12-12b06.p1k chr08 668 62 365454 365453 C 607 0.00 1395 reject_low 1 ALIGNMENT 29 Y12-12b06.p1k chr15 700 667 427946 427979 C 34 97.06 1395 reject_low 2 ALIGNMENT 0 Y12-12b06.p1k chr15 666 62 427980 427979 C 605 0.00 1395 reject_low 2 ALIGNMENT 759 Y12-12b06.q1k chr09 1049 29 385054 386118 C 1021 92.85 1301 accept 0 ALIGNMENT 31 Y12-12b06.p1k chr08 704 669 365418 365453 C 36 97.22 1395 reject_low 1 ALIGNMENT 24 Y12-12b06.p1k chr15 703 669 428009 428043 C 35 91.43 1395 reject_low 5 ALIGNMENT 0 Y12-12b06.p1k chr08 874 705 365419 365418 C 170 0.00 1395 reject_low 1 ALIGNMENT 0 Y12-12b06.p1k chr11 874 705 576117 576116 C 170 0.00 1395 reject_low 4 ALIGNMENT 24 Y12-12b06.p1k chr11 704 667 576116 576153 C 38 89.47 1395 reject_low 4 ALIGNMENT 1010 Y12-12b06.p1k chr09 25 1299 382246 383523 F 1275 93.65 1395 accept 0 ALIGNMENT 27 Y12-12b06.p1k chr08 704 667 365376 365413 C 38 92.11 1395 reject_low 3 ALIGNMENT 995 Y12-12b08.p1k chr11 1164 18 176006 177162 C 1147 96.77 1380 accept 0 ALIGNMENT 1013 Y12-12b08.q1k chr11 32 1184 170655 171820 F 1153 96.53 1350 accept 0 ALIGNMENT 935 Y12-12b09.p1k chr07 23 1086 57894 58972 F 1064 96.90 1321 accept 0 ALIGNMENT 1005 Y12-12b09.q1k chr07 1257 34 61491 62728 C 1224 95.83 1301 accept 0 ALIGNMENT 990 Y12-12b10.p1k chr08 1206 21 405688 406885 C 1186 96.88 1367 accept 0 ALIGNMENT 1070 Y12-12b10.q1k chr08 34 1304 402634 403910 F 1271 95.75 1307 accept 0 ALIGNMENT 1015 Y12-12b11.p1k chr16 26 1168 604272 605427 F 1143 97.38 1439 accept 0 ALIGNMENT 1010 Y12-12b11.q1k chr16 1272 33 608474 609722 C 1240 94.68 1364 accept 0 ALIGNMENT 1016 Y12-12b12.q1k chr15 1270 28 875162 876418 C 1243 95.41 1356 accept 0 ALIGNMENT 965 Y12-12b12.p1k chr15 19 1096 872213 873300 F 1078 97.59 1432 accept 0 ALIGNMENT 762 Y12-12b13.q1k chr02 1004 37 374976 375959 C 968 92.46 1303 accept 0 ALIGNMENT 985 Y12-12b13.p1k chr02 21 1126 370844 371966 F 1106 97.29 1355 accept 0 ALIGNMENT 965 Y12-12b14.p1k chr01 1100 16 141631 142723 C 1085 97.88 1371 accept 0 ALIGNMENT 919 Y12-12b14.q1k chr01 36 1084 137007 138067 F 1049 96.57 1334 accept 0 ALIGNMENT 1025 Y12-12b15.q1k chr11 1195 36 488192 489359 C 1160 96.90 1196 accept 0 ALIGNMENT 922 Y12-12b15.p1k chr11 20 1161 483117 484274 F 1142 95.45 1343 accept 0 ALIGNMENT 895 Y12-12b16.q1k chr16 1072 38 180422 181449 C 1035 97.29 1225 accept 0 ALIGNMENT 1005 Y12-12b16.p1k chr16 26 1204 176997 178184 F 1179 96.61 1379 accept 0 ALIGNMENT 1005 Y12-12b18.q1k chr02 1176 30 619390 620543 C 1147 97.12 1320 accept 0 ALIGNMENT 1064 Y12-12b18.p1k chr02 20 1197 615740 616933 F 1178 97.54 1355 accept 0 ALIGNMENT 1036 Y12-12b19.q1k chr07 33 1179 620635 621783 F 1147 97.65 1238 accept 0 ALIGNMENT 1006 Y12-12b19.p1k chr07 1151 16 624012 625162 C 1136 96.92 1361 accept 0 ALIGNMENT 1018 Y12-12b20.q1k chr05 33 1234 317195 318393 F 1202 95.76 1237 accept 0 ALIGNMENT 911 Y12-12b20.p1k chr05 1057 30 320246 321286 C 1028 97.47 1309 accept 0 ALIGNMENT 1023 Y12-12b21.q1k chr11 1167 31 418027 419166 C 1137 97.71 1169 accept 0 ALIGNMENT 1039 Y12-12b21.p1k chr11 20 1353 413748 415067 F 1334 94.45 1378 accept 0 ALIGNMENT 855 Y12-12b23.q1k chr13 30 1057 370650 371671 F 1028 96.30 1170 accept_trans 0 ALIGNMENT 1004 Y12-12b23.p1k chr13 1205 28 380662 381854 C 1178 96.77 1294 accept_trans 0 ALIGNMENT 947 Y12-12b24.p1k chr12 17 1155 261305 262431 F 1139 95.87 1333 accept 0 ALIGNMENT 848 Y12-12b24.q1k chr12 1005 30 265762 266722 C 976 97.75 1218 accept 0 ALIGNMENT 1023 Y12-12c02.p1k chr02 22 1174 546089 547249 F 1153 97.66 1403 accept 0 ALIGNMENT 1022 Y12-12c02.q1k chr02 1254 31 549459 550675 C 1224 96.16 1298 accept 0 ALIGNMENT 877 Y12-12c03.p1k chr07 21 1069 296484 297548 F 1049 96.09 1358 accept 0 ALIGNMENT 1028 Y12-12c03.q1k chr07 1247 37 300200 301425 C 1211 96.53 1338 accept 0 ALIGNMENT 963 Y12-12c04.p1k chr12 1163 25 716456 717591 C 1139 96.05 1419 accept 0 ALIGNMENT 1058 Y12-12c04.q1k chr12 27 1199 713354 714531 F 1173 97.27 1348 accept 0 ALIGNMENT 82 Y12-12c05.p1k vc_1 179 44 1970 2105 C 136 86.76 1476|68,0 reject_low 5 ALIGNMENT 304 Y12-12c05.p1k chr12 218 848 451418 452061 F 631 84.79 1476 manual 1 ALIGNMENT 21 Y12-12c05.p1k vc_1 64 44 2452 2472 C 21 100.00 1476|0,68 reject_low 5 ALIGNMENT 82 Y12-12c05.p1k vc_2 179 44 1970 2105 C 136 86.76 1476 reject_low 2 ALIGNMENT 82 Y12-12c05.p1k vc_7 44 179 100 235 F 136 86.76 1476 reject_low 4 ALIGNMENT 306 Y12-12c05.p1k chr12 204 848 460541 461198 F 645 84.50 1476 manual 0 ALIGNMENT 82 Y12-12c05.p1k vc_5 179 44 4890 5025 C 136 86.76 1476 reject_low 3 ALIGNMENT 0 Y12-12c05.p1k vc_1 111 112 2405 2037 C 0 0.00 1476 reject_low 5 ALIGNMENT 133 Y12-12c05.p1k chr12 569 848 489754 490029 F 280 84.64 1476 reject_low 6 ALIGNMENT 960 Y12-12c06.q1k chr09 29 1147 271580 272713 F 1119 96.87 1358 accept 0 ALIGNMENT 1024 Y12-12c06.p1k chr09 1197 29 274822 276005 C 1169 96.49 1372 accept 0 ALIGNMENT 511 Y12-12c07.p1k chr12 21 636 454791 455404 F 616 95.29 1384 accept 0 ALIGNMENT 965 Y12-12c07.q1k chr12 1196 38 466927 468087 C 1159 95.69 1357 accept 0,1 ALIGNMENT 962 Y12-12c07.q1k chr12 1192 38 457794 458950 C 1155 95.67 1357 reject_low 2 ALIGNMENT 511 Y12-12c07.p1k chr12 21 636 463928 464541 F 616 95.29 1384 accept 1 ALIGNMENT 1041 Y12-12c08.q1k chr12 1228 34 895481 896686 C 1195 96.82 1387 accept 0 ALIGNMENT 1095 Y12-12c08.p1k chr12 18 1313 891303 892613 F 1296 96.06 1430 accept 0 ALIGNMENT 156 Y12-12c09.q1k chr11 531 171 646909 647242 C 361 85.04 1238 reject_low 5 ALIGNMENT 52 Y12-12c09.q1k chr11 882 819 647746 647809 C 64 93.75 1238 reject_low 3 ALIGNMENT 0 Y12-12c09.q1k chr11 190 62 647304 647303 C 129 0.00 1238 reject_low 11 ALIGNMENT 36 Y12-12c09.q1k chr11 736 677 647730 647789 C 60 86.67 1238 reject_low 15 ALIGNMENT 0 Y12-12c09.q1k chr11 795 532 646910 646909 C 264 0.00 1238 reject_low 5 ALIGNMENT 0 Y12-12c09.q1k chr11 676 62 647790 647789 C 615 0.00 1238 reject_low 15 ALIGNMENT 0 Y12-12c09.q1k chr11 795 613 646910 646909 C 183 0.00 1238 reject_low 8 ALIGNMENT 34 Y12-12c09.q1k chr11 1061 1001 647243 647303 C 61 85.25 1238 reject_low 15 ALIGNMENT 0 Y12-12c09.q1k chr11 170 62 647243 647242 C 109 0.00 1238 reject_low 5 ALIGNMENT 0 Y12-12c09.q1k chr11 383 251 646976 646973 C 133 0.00 1238 reject_low 13 ALIGNMENT 36 Y12-12c09.q1k chr11 466 407 647730 647789 C 60 86.67 1238 reject_low 2,4 ALIGNMENT 236 Y12-12c09.q1k chr11 972 299 646900 647600 C 674 80.56 1238 reject_low 7 ALIGNMENT 532 Y12-12c09.q1k chr11 1051 37 646902 647943 C 1015 85.71 1238 accept 0 ALIGNMENT 0 Y12-12c09.q1k chr11 406 62 647790 647789 C 345 0.00 1238 reject_low 2,4 ALIGNMENT 0 Y12-12c09.q1k chr11 818 62 647810 647809 C 757 0.00 1238 reject_low 3 ALIGNMENT 300 Y12-12c09.q1k chr11 979 488 647163 647681 C 492 88.01 1238 reject_low 2 ALIGNMENT 0 Y12-12c09.q1k chr11 1057 1058 646977 647624 C 0 0.00 1238 reject_low 6 ALIGNMENT 44 Y12-12c09.q1k chr11 1238 1053 646797 646981 C 186 77.42 1238|0,5 reject_low 2,3,4,6,11 ALIGNMENT 48 Y12-12c09.q1k chr11 250 191 647055 647114 C 60 93.33 1238 reject_low 14 ALIGNMENT 0 Y12-12c09.q1k chr11 1052 1035 646982 647566 C 18 0.00 1238 reject_low 3 ALIGNMENT 37 Y12-12c09.q1k chr11 1061 1001 647621 647681 C 61 86.89 1238|4,0 reject_low 6 ALIGNMENT 0 Y12-12c09.q1k chr11 1000 980 647682 647729 C 21 0.00 1238 reject_low 6 ALIGNMENT 0 Y12-12c09.q1k chr11 190 62 647682 647681 C 129 0.00 1238 reject_low 7 ALIGNMENT 0 Y12-12c09.q1k chr11 190 62 647115 647114 C 129 0.00 1238 reject_low 14 ALIGNMENT 0 Y12-12c09.q1k chr11 1052 980 646982 647162 C 73 0.00 1238 reject_low 2 ALIGNMENT 0 Y12-12c09.q1k chr11 899 62 647810 647809 C 838 0.00 1238 reject_low 6 ALIGNMENT 0 Y12-12c09.q1k chr11 795 235 646910 646909 C 561 0.00 1238 reject_low 12 ALIGNMENT 0 Y12-12c09.q1k chr11 795 460 646901 646900 C 336 0.00 1238 reject_low 13 ALIGNMENT 647 Y12-12c09.p1k chr11 20 757 643825 644561 F 738 96.75 1462 accept 0 ALIGNMENT 0 Y12-12c09.q1k chr11 298 251 647034 647243 C 48 0.00 1238 reject_low 11 ALIGNMENT 0 Y12-12c09.q1k chr11 298 251 647412 647432 C 48 0.00 1238 reject_low 9 ALIGNMENT 42 Y12-12c09.q1k chr11 250 191 647622 647681 C 60 90.00 1238 reject_low 7 ALIGNMENT 0 Y12-12c09.q1k chr11 170 62 647432 647431 C 109 0.00 1238 reject_low 10 ALIGNMENT 0 Y12-12c09.q1k chr11 275 251 646976 647054 C 25 0.00 1238 reject_low 14 ALIGNMENT 0 Y12-12c09.q1k chr11 170 62 647054 647053 C 109 0.00 1238 reject_low 13 ALIGNMENT 399 Y12-12c09.q1k chr11 891 171 646900 647620 C 721 86.69 1238 reject_low 1 ALIGNMENT 0 Y12-12c09.q1k chr11 298 251 647601 647621 C 48 0.00 1238 reject_low 7 ALIGNMENT 0 Y12-12c09.q1k chr11 298 251 647223 647432 C 48 0.00 1238 reject_low 8 ALIGNMENT 252 Y12-12c09.q1k chr11 612 299 646909 647222 C 314 93.63 1238 reject_low 8 ALIGNMENT 0 Y12-12c09.q1k chr11 487 467 647682 647729 C 21 0.00 1238 reject_low 2 ALIGNMENT 31 Y12-12c09.q1k chr11 919 887 647601 647633 C 33 100.00 1238 reject_low 15 ALIGNMENT 0 Y12-12c09.q1k chr11 1000 920 647304 647600 C 81 0.00 1238 reject_low 15 ALIGNMENT 0 Y12-12c09.q1k chr11 919 883 647682 647745 C 37 0.00 1238 reject_low 3 ALIGNMENT 50 Y12-12c09.q1k chr11 979 900 647730 647809 C 80 87.50 1238 reject_low 6 ALIGNMENT 88 Y12-12c09.q1k chr11 1034 920 647567 647681 C 115 92.17 1238 reject_low 3 ALIGNMENT 39 Y12-12c09.q1k chr11 358 299 646974 647033 C 60 88.33 1238 reject_low 11 ALIGNMENT 0 Y12-12c09.q1k chr11 1052 359 646982 646973 C 694 0.00 1238 reject_low 11 ALIGNMENT 48 Y12-12c09.q1k chr11 250 191 647433 647492 C 60 93.33 1238 reject_low 8,9 ALIGNMENT 52 Y12-12c09.q1k chr11 342 276 646909 646975 C 67 92.54 1238 reject_low 14 ALIGNMENT 61 Y12-12c09.q1k chr11 459 384 646900 646975 C 76 93.42 1238 reject_low 13 ALIGNMENT 0 Y12-12c09.q1k chr11 919 883 647493 647556 C 37 0.00 1238 reject_low 4 ALIGNMENT 35 Y12-12c09.q1k chr11 234 191 646909 646952 C 44 93.18 1238 reject_low 12 ALIGNMENT 214 Y12-12c09.q1k chr11 810 299 646900 647411 C 512 82.62 1238 reject_low 9 ALIGNMENT 0 Y12-12c09.q1k chr11 886 737 647634 647729 C 150 0.00 1238 reject_low 15 ALIGNMENT 56 Y12-12c09.q1k chr11 250 171 646974 647053 C 80 90.00 1238 reject_low 13 ALIGNMENT 61 Y12-12c09.q1k chr11 729 654 646900 646975 C 76 93.42 1238 reject_low 10 ALIGNMENT 0 Y12-12c09.q1k chr11 190 62 647493 647492 C 129 0.00 1238 reject_low 8,9 ALIGNMENT 0 Y12-12c09.q1k chr11 795 343 646910 646909 C 453 0.00 1238 reject_low 14 ALIGNMENT 0 Y12-12c09.q1k chr11 170 62 647621 647620 C 109 0.00 1238 reject_low 1 ALIGNMENT 0 Y12-12c09.q1k chr11 190 62 646953 646952 C 129 0.00 1238 reject_low 12 ALIGNMENT 0 Y12-12c09.q1k chr11 653 629 646976 646973 C 25 0.00 1238 reject_low 10 ALIGNMENT 79 Y12-12c09.q1k chr11 1034 920 647378 647492 C 115 89.57 1238 reject_low 4 ALIGNMENT 0 Y12-12c09.q1k chr11 1052 1035 646982 647377 C 18 0.00 1238 reject_low 4 ALIGNMENT 168 Y12-12c09.q1k chr11 628 171 646974 647431 C 458 81.00 1238 reject_low 10 ALIGNMENT 0 Y12-12c09.q1k chr11 795 730 646901 646900 C 66 0.00 1238 reject_low 10 ALIGNMENT 45 Y12-12c09.q1k chr11 250 191 647244 647303 C 60 91.67 1238 reject_low 11 ALIGNMENT 119 Y12-12c09.q1k chr11 882 758 647557 647681 C 125 98.40 1238 reject_low 4 ALIGNMENT 0 Y12-12c09.q1k chr11 757 467 647682 647729 C 291 0.00 1238 reject_low 4 ALIGNMENT 0 Y12-12c10.q1k chr12 221 893 490543 490542 F 673 0.00 1279 reject_low 2 ALIGNMENT 1053 Y12-12c10.q1k chr12 30 1273 452385 453607 F 1244 95.98 1279 accept 0 ALIGNMENT 1044 Y12-12c10.p1k chr12 1167 19 465655 466822 C 1149 97.65 1391 accept 1 ALIGNMENT 1044 Y12-12c10.p1k chr12 1167 19 456518 457685 C 1149 97.65 1391 accept 0 ALIGNMENT 184 Y12-12c10.q1k chr12 30 220 490353 490543 F 191 98.95 1279 reject_low 2 ALIGNMENT 1053 Y12-12c10.q1k chr12 30 1273 461522 462744 F 1244 95.98 1279 accept 1 ALIGNMENT 1039 Y12-12c12.q1k chr07 34 1157 135383 136512 F 1124 97.86 1327 accept 0 ALIGNMENT 962 Y12-12c12.p1k chr07 1127 18 140038 141161 C 1110 96.94 1389 accept 0 ALIGNMENT 1066 Y12-12c13.q1k chr12 1318 29 456621 457934 C 1290 95.04 1365 accept 0 ALIGNMENT 421 Y12-12c13.p1k chr12 21 587 489856 490423 F 567 91.53 1401 reject_low 2 ALIGNMENT 437 Y12-12c13.p1k chr12 21 663 461025 461668 F 643 89.42 1401 reject_low 1 ALIGNMENT 1063 Y12-12c13.q1k chr12 1289 29 465790 467071 C 1261 95.48 1365 reject_low 1 ALIGNMENT 437 Y12-12c13.p1k chr12 21 663 451888 452531 F 643 89.42 1401 accept 0 ALIGNMENT 1020 Y12-12c15.q1k chr13 1259 37 236388 237628 C 1223 95.83 1352 accept 0 ALIGNMENT 930 Y12-12c15.p1k chr13 22 1206 233410 234590 F 1185 94.26 1393 accept 0 ALIGNMENT 960 Y12-12c16.p1k chr05 25 1120 35902 37009 F 1096 97.72 1343 accept 0 ALIGNMENT 1000 Y12-12c16.q1k chr05 1183 32 39675 40838 C 1152 96.35 1358 accept 0 ALIGNMENT 920 Y12-12c17.p1k chr15 1112 20 815424 816530 C 1093 96.43 1386 accept 0 ALIGNMENT 1028 Y12-12c17.q1k chr15 36 1182 812086 813237 F 1147 97.56 1189 accept 0 ALIGNMENT 254 Y12-12c18.q1k chr07 147 528 195199 195570 F 382 91.62 1070 accept 0 ALIGNMENT 1009 Y12-12c18.p1k chr07 1164 23 199027 200183 C 1142 97.02 1392 accept 0 ALIGNMENT 957 Y12-12c19.q1k chr02 1186 36 513397 514566 C 1151 96.09 1248 accept 0 ALIGNMENT 999 Y12-12c19.p1k chr02 23 1157 508493 509645 F 1135 97.62 1337 accept 0 ALIGNMENT 983 Y12-12c20.q1k chr04 1200 31 124335 125535 C 1170 95.90 1240 accept 0 ALIGNMENT 274 Y12-12c20.q1k chr04 1180 718 220155 220644 C 463 88.12 1240 reject_low 1 ALIGNMENT 0 Y12-12c20.q1k chr04 717 62 220645 220644 C 656 0.00 1240 reject_low 1 ALIGNMENT 1057 Y12-12c21.q1k chr07 1215 36 759701 760880 C 1180 97.46 1216 accept 0 ALIGNMENT 1054 Y12-12c21.p1k chr07 22 1300 756805 758097 F 1279 95.31 1319 accept 0 ALIGNMENT 1077 Y12-12c22.p1k chr13 20 1246 139377 140608 F 1227 97.15 1344 accept 0 ALIGNMENT 1041 Y12-12c22.q1k chr13 1202 26 143717 144899 C 1177 97.37 1235 accept 0 ALIGNMENT 929 Y12-12c24.p1k chr04 1102 21 1391471 1392555 C 1082 96.58 1270 accept 0 ALIGNMENT 908 Y12-12c24.q1k chr04 30 1098 1388172 1389233 F 1069 97.38 1208 accept 0 ALIGNMENT 118 Y12-12d01.p1k chr13 895 1106 753932 754155 F 212 87.74 1393 accept 0 ALIGNMENT 937 Y12-12d01.q1k chr13 1224 31 757932 759127 C 1194 93.63 1306 accept 0 ALIGNMENT 0 Y12-12d01.q1k chr03 256 859 247958 247957 F 604 0.00 1306 reject_low 2 ALIGNMENT 0 Y12-12d01.p1k chr13 62 894 753932 753931 F 833 0.00 1393 accept 0 ALIGNMENT 0 Y12-12d01.q1k chr03 62 229 247933 247932 F 168 0.00 1306 reject_low 2 ALIGNMENT 20 Y12-12d01.q1k chr03 230 255 247933 247958 F 26 100.00 1306 reject_low 2 ALIGNMENT 840 Y12-12d01.p1k chr07 896 24 941819 942691 C 873 99.54 1393 reject_low 1 ALIGNMENT 0 Y12-12d02.p1k chr05 62 484 177097 177096 F 423 0.00 1436 reject_low 12 ALIGNMENT 0 Y12-12d02.p1k chr12 927 384 598767 598766 C 544 0.00 1436 reject_low 19 ALIGNMENT 0 Y12-12d02.p1k chr05 62 484 354929 354928 F 423 0.00 1436 reject_low 13 ALIGNMENT 0 Y12-12d02.p1k chr12 274 206 598874 598941 C 69 0.00 1436 reject_low 19 ALIGNMENT 0 Y12-12d02.p1k chr13 568 927 290881 290880 F 360 0.00 1436 reject_low 5 ALIGNMENT 0 Y12-12d02.p1k chr03 927 570 82450 82449 C 358 0.00 1436 reject_low 2 ALIGNMENT 191 Y12-12d02.p1k chr07 110 326 535547 535763 F 217 98.16 1436|3,2 accept_trans 0 ALIGNMENT 0 Y12-12d02.p1k chr07 927 368 535267 535266 C 560 0.00 1436 reject_low 17 ALIGNMENT 79 Y12-12d02.p1k chr03 569 485 82449 82533 C 85 97.65 1436 reject_low 2 ALIGNMENT 0 Y12-12d02.p1k chr07 274 62 535908 535907 C 213 0.00 1436 reject_low 18 ALIGNMENT 0 Y12-12d02.p1k chr07 62 485 328586 328585 F 424 0.00 1436 reject_low 14 ALIGNMENT 73 Y12-12d02.p1k chr07 24 114 535121 535214 F 91 96.70 1436|0,2 accept_trans 0 ALIGNMENT 0 Y12-12d02.p1k chr10 927 566 115927 115926 C 362 0.00 1436 reject_low 7 ALIGNMENT 0 Y12-12d02.p1k chr09 559 927 197661 197660 F 369 0.00 1436 reject_low 16 ALIGNMENT 971 Y12-12d02.q1k chr07 1178 28 545310 546475 C 1151 96.26 1256 accept_trans 0 ALIGNMENT 0 Y12-12d02.p1k chr07 485 62 401602 401601 C 424 0.00 1436 reject_low 6 ALIGNMENT 77 Y12-12d02.p1k chr13 485 567 290799 290881 F 83 97.59 1436 reject_low 5 ALIGNMENT 0 Y12-12d02.p1k chr05 927 563 487322 487321 C 365 0.00 1436 reject_low 9 ALIGNMENT 76 Y12-12d02.p1k chr09 477 558 370405 370486 F 82 97.56 1436 reject_low 1 ALIGNMENT 78 Y12-12d02.p1k chr16 567 486 210181 210262 C 82 98.78 1436 reject_low 4 ALIGNMENT 0 Y12-12d02.p1k chr16 927 568 210182 210181 C 360 0.00 1436 reject_low 4 ALIGNMENT 0 Y12-12d02.p1k chr07 113 112 535213 535549 F 0 0.00 1436 accept_trans 0 ALIGNMENT 27 Y12-12d02.p1k chr12 383 275 598766 598873 C 109 77.98 1436 reject_low 19 ALIGNMENT 0 Y12-12d02.p1k chr09 62 476 370405 370404 F 415 0.00 1436 reject_low 1 ALIGNMENT 0 Y12-12d02.p1k chr12 142 62 599005 599004 C 81 0.00 1436 reject_low 19 ALIGNMENT 0 Y12-12d02.p1k chr07 927 368 535816 535815 C 560 0.00 1436 reject_low 18 ALIGNMENT 75 Y12-12d02.p1k chr07 566 486 401521 401601 C 81 97.53 1436 reject_low 6 ALIGNMENT 0 Y12-12d02.p1k chr02 62 484 645161 645160 F 423 0.00 1436 reject_low 11 ALIGNMENT 0 Y12-12d02.p1k chr04 480 62 1017278 1017277 C 419 0.00 1436 reject_low 8 ALIGNMENT 75 Y12-12d02.p1k chr05 562 485 487321 487398 C 78 98.72 1436 reject_low 9 ALIGNMENT 0 Y12-12d02.p1k chr03 484 62 82534 82533 C 423 0.00 1436 reject_low 2 ALIGNMENT 0 Y12-12d02.p1k chr11 927 563 141019 141018 C 365 0.00 1436 reject_low 10 ALIGNMENT 20 Y12-12d02.p1k chr07 367 275 535815 535907 C 93 77.42 1436 reject_low 18 ALIGNMENT 59 Y12-12d02.p1k chr09 485 558 197588 197661 F 74 93.24 1436 reject_low 16 ALIGNMENT 75 Y12-12d02.p1k chr11 562 485 141018 141095 C 78 98.72 1436 reject_low 10 ALIGNMENT 787 Y12-12d02.p1k chr07 322 1281 541690 542653 F 960 94.48 1436|3,0 accept_trans 0 ALIGNMENT 0 Y12-12d02.p1k chr05 559 927 355002 355001 F 369 0.00 1436 reject_low 13 ALIGNMENT 74 Y12-12d02.p1k chr05 485 558 354929 355002 F 74 100.00 1436 reject_low 13 ALIGNMENT 64 Y12-12d02.p1k chr04 567 481 1017192 1017277 C 87 91.95 1436 reject_low 8 ALIGNMENT 0 Y12-12d02.p1k chr07 260 62 535373 535372 C 199 0.00 1436 reject_low 17 ALIGNMENT 0 Y12-12d02.p1k chr07 559 927 328658 328657 F 369 0.00 1436 reject_low 14 ALIGNMENT 72 Y12-12d02.p1k chr12 486 557 797178 797249 F 72 100.00 1436 reject_low 15 ALIGNMENT 0 Y12-12d02.p1k chr07 325 324 535762 541692 F 0 0.00 1436 accept_trans 0 ALIGNMENT 0 Y12-12d02.p1k chr09 62 484 197588 197587 F 423 0.00 1436 reject_low 16 ALIGNMENT 0 Y12-12d02.p1k chr15 142 62 595093 595092 C 81 0.00 1436 reject_low 3 ALIGNMENT 0 Y12-12d02.p1k chr11 484 62 141096 141095 C 423 0.00 1436 reject_low 10 ALIGNMENT 0 Y12-12d02.p1k chr07 927 567 401522 401521 C 361 0.00 1436 reject_low 6 ALIGNMENT 0 Y12-12d02.p1k chr12 558 927 797249 797248 F 370 0.00 1436 reject_low 15 ALIGNMENT 0 Y12-12d02.p1k chr15 927 368 594873 594872 C 560 0.00 1436 reject_low 3 ALIGNMENT 0 Y12-12d02.p1k chr13 62 484 290799 290798 F 423 0.00 1436 reject_low 5 ALIGNMENT 75 Y12-12d02.p1k chr10 565 485 115926 116006 C 81 97.53 1436 reject_low 7 ALIGNMENT 21 Y12-12d02.p1k chr12 205 143 598942 599004 C 63 79.37 1436 reject_low 19 ALIGNMENT 73 Y12-12d02.p1k chr07 486 558 328586 328658 F 73 100.00 1436 reject_low 14 ALIGNMENT 74 Y12-12d02.p1k chr05 485 558 177097 177170 F 74 100.00 1436 reject_low 12 ALIGNMENT 0 Y12-12d02.p1k chr16 485 62 210263 210262 C 424 0.00 1436 reject_low 4 ALIGNMENT 0 Y12-12d02.p1k chr05 559 927 177170 177169 F 369 0.00 1436 reject_low 12 ALIGNMENT 0 Y12-12d02.p1k chr05 484 62 487399 487398 C 423 0.00 1436 reject_low 9 ALIGNMENT 20 Y12-12d02.p1k chr07 367 261 535266 535372 C 107 76.64 1436 reject_low 17 ALIGNMENT 0 Y12-12d02.p1k chr09 559 927 370486 370485 F 369 0.00 1436 reject_low 1 ALIGNMENT 74 Y12-12d02.p1k chr02 485 558 645161 645234 F 74 100.00 1436 reject_low 11 ALIGNMENT 0 Y12-12d02.p1k chr04 927 568 1017193 1017192 C 360 0.00 1436 reject_low 8 ALIGNMENT 23 Y12-12d02.p1k chr15 367 143 594872 595092 C 225 74.67 1436 reject_low 3 ALIGNMENT 0 Y12-12d02.p1k chr10 484 62 116007 116006 C 423 0.00 1436 reject_low 7 ALIGNMENT 0 Y12-12d02.p1k chr02 559 927 645234 645233 F 369 0.00 1436 reject_low 11 ALIGNMENT 0 Y12-12d02.p1k chr12 62 485 797178 797177 F 424 0.00 1436 reject_low 15 ALIGNMENT 0 Y12-12d03.p1k chr02 62 126 5890 5889 F 65 0.00 1389 reject_low 5 ALIGNMENT 29 Y12-12d03.p1k chr11 215 28 666125 666318 C 188 82.45 1389 reject_low 20 ALIGNMENT 0 Y12-12d03.p1k chr14 893 914 7478 7477 F 22 0.00 1389 reject_low 17 ALIGNMENT 0 Y12-12d03.p1k chr09 62 294 7242 7241 F 233 0.00 1389 reject_low 1 ALIGNMENT 506 Y12-12d03.p1k chr01 28 1183 2 1157 F 1156 85.12 1389 reject_low 6 ALIGNMENT 0 Y12-12d03.p1k chr15 126 62 1084611 1084610 C 65 0.00 1389 reject_low 12 ALIGNMENT 339 Y12-12d03.p1k chr06 228 892 4920 5580 F 665 86.92 1389 reject_low 19 ALIGNMENT 416 Y12-12d03.p1k chr13 46 893 5537 6394 F 848 87.26 1389 reject_low 16 ALIGNMENT 522 Y12-12d03.p1k chr11 31 1183 2 1161 F 1153 85.26 1389 reject_low 4 ALIGNMENT 540 Y12-12d03.p1k chr10 295 1183 7225 8123 F 889 89.43 1389 accept_tel 0 ALIGNMENT 77 Y12-12d03.p1k chr11 1136 981 665387 665548 C 156 84.62 1389 reject_low 20 ALIGNMENT 406 Y12-12d03.p1k chr03 22 922 286 1178 F 901 86.13 1389 reject_low 15 ALIGNMENT 0 Y12-12d03.p1k chr11 236 216 666137 666124 C 21 0.00 1389 reject_low 20 ALIGNMENT 512 Y12-12d03.p1k chr05 987 127 569450 570300 C 861 89.66 1389 reject_low 10 ALIGNMENT 489 Y12-12d03.p1k chr15 1038 127 1083721 1084610 C 912 87.50 1389 reject_low 12 ALIGNMENT 0 Y12-12d03.p1k chr05 126 62 570301 570300 C 65 0.00 1389 reject_low 10 ALIGNMENT 376 Y12-12d03.p1k chr08 805 21 556141 556931 C 785 87.52 1389 reject_low 18 ALIGNMENT 0 Y12-12d03.p1k chr06 893 914 5580 5579 F 22 0.00 1389 reject_low 19 ALIGNMENT 503 Y12-12d03.p1k chr13 845 25 923535 924351 C 821 91.11 1389 reject_low 13 ALIGNMENT 522 Y12-12d03.p1k chr14 1145 22 782966 784091 C 1124 85.85 1389 reject_low 7 ALIGNMENT 544 Y12-12d03.p1k chr03 1032 22 315589 316596 C 1011 88.23 1389 reject_low 8 ALIGNMENT 0 Y12-12d03.p1k chr13 894 914 6394 6393 F 21 0.00 1389 reject_low 16 ALIGNMENT 526 Y12-12d03.p1k chr15 22 1017 24 1022 F 996 87.75 1389 reject_low 9 ALIGNMENT 0 Y12-12d03.p1k chr13 914 846 923536 923535 C 69 0.00 1389 reject_low 13 ALIGNMENT 455 Y12-12d03.p1k chr09 893 26 439013 439882 C 868 88.25 1389 reject_low 14 ALIGNMENT 492 Y12-12d03.p1k chr16 127 1038 6531 7420 F 912 87.61 1389 reject_low 11 ALIGNMENT 0 Y12-12d03.p1k chr08 914 806 556142 556141 C 109 0.00 1389 reject_low 18 ALIGNMENT 0 Y12-12d03.p1k chr16 62 126 6531 6530 F 65 0.00 1389 reject_low 11 ALIGNMENT 582 Y12-12d03.p1k chr02 127 1145 5890 6919 F 1019 88.22 1389 reject_low 5 ALIGNMENT 0 Y12-12d03.p1k chr04 126 62 1525310 1525309 C 65 0.00 1389 reject_low 3 ALIGNMENT 0 Y12-12d03.p1k chr11 980 837 665549 665546 C 144 0.00 1389 reject_low 20 ALIGNMENT 400 Y12-12d03.p1k chr14 23 892 6617 7478 F 870 86.67 1389 reject_low 17 ALIGNMENT 580 Y12-12d03.p1k chr04 1153 127 1524285 1525309 C 1027 88.61 1389 reject_low 3 ALIGNMENT 0 Y12-12d03.p1k chr10 62 294 7225 7224 F 233 0.00 1389 accept_tel 0 ALIGNMENT 860 Y12-12d03.q1k chr09 1205 31 10587 11758 C 1175 93.11 1337 reject_low 1 ALIGNMENT 540 Y12-12d03.p1k chr09 295 1183 7242 8140 F 889 89.43 1389 reject_low 1 ALIGNMENT 338 Y12-12d03.p1k chr11 836 237 665547 666136 C 600 89.00 1389 reject_low 20 ALIGNMENT 0 Y12-12d03.p1k chr06 62 227 4920 4919 F 166 0.00 1389 reject_low 19 ALIGNMENT 0 Y12-12d03.p1k chr09 914 894 439014 439013 C 21 0.00 1389 reject_low 14 ALIGNMENT 864 Y12-12d03.q1k chr10 1231 31 10541 11741 C 1201 92.67 1337 accept_tel 0 ALIGNMENT 642 Y12-12d03.p1k chr12 1168 22 1063938 1065101 C 1147 88.40 1389 reject_low 2 ALIGNMENT 957 Y12-12d04.q1k chr14 30 1232 428750 429957 F 1203 94.43 1358 accept 0 ALIGNMENT 1037 Y12-12d04.p1k chr14 1182 22 432029 433197 C 1161 97.59 1388 accept 0 ALIGNMENT 0 Y12-12d05.p1k chr05 287 62 53219 53218 C 226 0.00 1397 reject_low 1 ALIGNMENT 956 Y12-12d05.q1k chr04 1139 38 1305704 1306814 C 1102 96.37 1346 accept 0 ALIGNMENT 369 Y12-12d05.p1k chr05 781 288 52725 53218 C 494 91.70 1397 reject_low 1 ALIGNMENT 989 Y12-12d05.p1k chr04 22 1207 1301341 1302539 F 1186 95.53 1397 accept 0 ALIGNMENT 0 Y12-12d05.p1k chr05 897 782 52726 52725 C 116 0.00 1397 reject_low 1 ALIGNMENT 964 Y12-12d07.q1k chr09 1168 40 148610 149752 C 1129 95.48 1355 accept 0 ALIGNMENT 1001 Y12-12d07.p1k chr09 20 1188 143964 145145 F 1169 96.92 1412 accept 0 ALIGNMENT 1009 Y12-12d09.q1k chr15 32 1244 679856 681084 F 1213 95.80 1244 accept 0 ALIGNMENT 1057 Y12-12d09.p1k chr15 1212 25 683280 684475 C 1188 97.05 1411 accept 0 ALIGNMENT 946 Y12-12d10.q1k chr12 33 1262 467347 468555 F 1230 94.55 1265 reject_low 2 ALIGNMENT 946 Y12-12d10.q1k chr12 33 1262 458210 459418 F 1230 94.55 1265 accept 0 ALIGNMENT 1067 Y12-12d10.p1k chr12 1240 23 454299 455529 C 1218 96.63 1421 reject_low 1 ALIGNMENT 1067 Y12-12d10.p1k chr12 1240 23 463436 464666 C 1218 96.63 1421 accept 0 ALIGNMENT 1059 Y12-12d11.p1k chr13 16 1254 865684 866942 F 1239 96.21 1426 accept 0 ALIGNMENT 903 Y12-12d11.q1k chr13 1077 33 869442 870498 C 1045 96.75 1298 accept 0 ALIGNMENT 976 Y12-12d13.q1k chr16 32 1195 922897 924067 F 1164 95.10 1383 accept 0 ALIGNMENT 923 Y12-12d13.p1k chr16 1251 24 926218 927494 C 1228 93.32 1430 accept 0 ALIGNMENT 905 Y12-12d14.q1k chr04 33 1118 1521196 1522296 F 1086 95.95 1360 ambiguous_tel 1 ALIGNMENT 963 Y12-12d14.p1k chr16 1072 16 922074 923145 C 1057 97.73 1372 ambiguous_tel 0 ALIGNMENT 962 Y12-12d15.p1k chr15 24 1229 571848 573044 F 1206 94.86 1428 accept 0 ALIGNMENT 0 Y12-12d15.p1k chr12 212 844 427212 427211 F 633 0.00 1428 reject_low 12 ALIGNMENT 0 Y12-12d15.p1k chr07 131 62 544653 544652 C 70 0.00 1428 reject_low 8 ALIGNMENT 0 Y12-12d15.p1k chr02 62 131 405954 405953 F 70 0.00 1428 reject_low 5 ALIGNMENT 0 Y12-12d15.p1k chr12 210 844 793995 793994 F 635 0.00 1428 reject_low 7 ALIGNMENT 78 Y12-12d15.p1k chr13 132 211 463553 463632 F 80 100.00 1428 reject_low 11 ALIGNMENT 0 Y12-12d15.p1k chr09 131 62 324373 324372 C 70 0.00 1428 reject_low 9 ALIGNMENT 77 Y12-12d15.p1k chr12 131 211 427132 427212 F 81 98.77 1428 reject_low 12 ALIGNMENT 0 Y12-12d15.p1k chr10 844 213 374332 374331 C 632 0.00 1428 reject_low 6 ALIGNMENT 0 Y12-12d15.p1k chr04 212 844 569040 569039 F 633 0.00 1428 reject_low 14 ALIGNMENT 0 Y12-12d15.p1k chr13 62 131 463553 463552 F 70 0.00 1428 reject_low 11 ALIGNMENT 0 Y12-12d15.p1k chr11 844 211 512968 512967 C 634 0.00 1428 reject_low 13 ALIGNMENT 78 Y12-12d15.p1k chr11 210 132 512967 513045 C 79 100.00 1428 reject_low 13 ALIGNMENT 0 Y12-12d15.p1k chr12 62 129 793916 793915 F 68 0.00 1428 reject_low 7 ALIGNMENT 0 Y12-12d15.p1k chr12 62 130 427132 427131 F 69 0.00 1428 reject_low 12 ALIGNMENT 0 Y12-12d15.p1k chr11 131 62 513046 513045 C 70 0.00 1428 reject_low 13 ALIGNMENT 0 Y12-12d15.p1k chr09 844 212 336339 336338 C 633 0.00 1428 reject_low 4 ALIGNMENT 78 Y12-12d15.p1k chr09 211 132 324293 324372 C 80 100.00 1428 reject_low 9 ALIGNMENT 0 Y12-12d15.p1k chr10 62 131 355372 355371 F 70 0.00 1428 reject_low 10 ALIGNMENT 0 Y12-12d15.p1k chr10 62 127 541418 541417 F 66 0.00 1428 reject_low 2 ALIGNMENT 0 Y12-12d15.p1k chr14 844 211 519094 519093 C 634 0.00 1428 reject_low 16 ALIGNMENT 0 Y12-12d15.p1k chr10 212 844 204731 204730 F 633 0.00 1428 reject_low 3 ALIGNMENT 0 Y12-12d15.p1k chr09 844 212 324294 324293 C 633 0.00 1428 reject_low 9 ALIGNMENT 82 Y12-12d15.p1k chr09 211 129 336338 336420 C 83 100.00 1428 reject_low 4 ALIGNMENT 0 Y12-12d15.p1k chr07 62 131 531614 531613 F 70 0.00 1428 reject_low 15 ALIGNMENT 0 Y12-12d15.q1k chr04 829 679 1243221 1243220 C 151 0.00 1366 reject_low 1 ALIGNMENT 0 Y12-12d15.p1k chr07 212 844 531693 531692 F 633 0.00 1428 reject_low 15 ALIGNMENT 0 Y12-12d15.p1k chr13 212 844 463632 463631 F 633 0.00 1428 reject_low 11 ALIGNMENT 1037 Y12-12d15.q1k chr15 1136 30 574638 575747 C 1107 98.37 1366 accept 0 ALIGNMENT 84 Y12-12d15.p1k chr10 128 212 541418 541502 F 85 100.00 1428 reject_low 2 ALIGNMENT 0 Y12-12d15.p1k chr10 131 62 374412 374411 C 70 0.00 1428 reject_low 6 ALIGNMENT 83 Y12-12d15.p1k chr10 128 211 204648 204731 F 84 100.00 1428 reject_low 3 ALIGNMENT 0 Y12-12d15.p1k chr07 844 212 544574 544573 C 633 0.00 1428 reject_low 8 ALIGNMENT 0 Y12-12d15.p1k chr10 62 127 204648 204647 F 66 0.00 1428 reject_low 3 ALIGNMENT 78 Y12-12d15.p1k chr07 211 132 544573 544652 C 80 100.00 1428 reject_low 8 ALIGNMENT 632 Y12-12d15.q1k chr04 678 30 1243220 1243869 C 649 99.38 1366 reject_low 1 ALIGNMENT 70 Y12-12d15.p1k chr14 210 140 519093 519163 C 71 100.00 1428 reject_low 16 ALIGNMENT 78 Y12-12d15.p1k chr10 132 211 355372 355451 F 80 100.00 1428 reject_low 10 ALIGNMENT 79 Y12-12d15.p1k chr12 130 209 793916 793995 F 80 100.00 1428 reject_low 7 ALIGNMENT 0 Y12-12d15.p1k chr10 213 844 541502 541501 F 632 0.00 1428 reject_low 2 ALIGNMENT 0 Y12-12d15.p1k chr14 139 62 519164 519163 C 78 0.00 1428 reject_low 16 ALIGNMENT 79 Y12-12d15.p1k chr10 212 132 374331 374411 C 81 100.00 1428 reject_low 6 ALIGNMENT 0 Y12-12d15.p1k chr02 213 844 406034 406033 F 632 0.00 1428 reject_low 5 ALIGNMENT 79 Y12-12d15.p1k chr02 132 212 405954 406034 F 81 100.00 1428 reject_low 5 ALIGNMENT 0 Y12-12d15.p1k chr09 128 62 336421 336420 C 67 0.00 1428 reject_low 4 ALIGNMENT 75 Y12-12d15.p1k chr07 132 211 531614 531693 F 80 98.75 1428 reject_low 15 ALIGNMENT 0 Y12-12d15.p1k chr04 62 131 568961 568960 F 70 0.00 1428 reject_low 14 ALIGNMENT 0 Y12-12d15.p1k chr10 212 844 355451 355450 F 633 0.00 1428 reject_low 10 ALIGNMENT 75 Y12-12d15.p1k chr04 132 211 568961 569040 F 80 98.75 1428 reject_low 14 ALIGNMENT 1005 Y12-12d16.q1k chr04 33 1220 279171 280371 F 1188 96.38 1362 accept 0 ALIGNMENT 1042 Y12-12d16.p1k chr04 1246 25 282506 283710 C 1222 96.64 1442 accept 0 ALIGNMENT 23 Y12-12d17.q1k vc_1 31 4 2496 2522 C 28 96.43 1233 reject_low 1 ALIGNMENT 0 Y12-12d17.q1k vc_1 793 32 2497 2496 C 762 0.00 1233 reject_low 1 ALIGNMENT 875 Y12-12d17.p1k chr15 998 25 318745 319734 C 974 98.05 1341 accept 0 ALIGNMENT 861 Y12-12d17.q1k chr15 32 1144 315593 316702 F 1113 94.07 1233 accept 0 ALIGNMENT 0 Y12-12d18.p1k chr06 191 178 3196 3241 C 14 0.00 1382 reject_low 15 ALIGNMENT 91 Y12-12d18.p1k chr16 192 339 944019 944166 F 148 87.16 1382 reject_low 14 ALIGNMENT 88 Y12-12d18.p1k chr02 339 192 4212 4359 C 148 86.49 1382 reject_low 17 ALIGNMENT 0 Y12-12d18.p1k chr05 847 714 4538 4592 C 134 0.00 1382 reject_low 10 ALIGNMENT 68 Y12-12d18.p1k chr08 28 177 558275 558425 F 150 82.67 1382 reject_low 18 ALIGNMENT 77 Y12-12d18.p1k chr12 177 28 9740 9890 C 150 84.67 1382 reject_low 11 ALIGNMENT 77 Y12-12d18.p1k chr12 177 28 4205 4355 C 150 84.67 1382 reject_low 12 ALIGNMENT 0 Y12-12d18.p1k chr14 191 178 5109 5154 C 14 0.00 1382 reject_low 8 ALIGNMENT 0 Y12-12d18.p1k chr08 178 191 558426 558471 F 14 0.00 1382 reject_low 18 ALIGNMENT 406 Y12-12d18.p1k chr10 1003 192 4669 5480 C 812 84.11 1382 ambiguous_tel 1 ALIGNMENT 0 Y12-12d18.p1k chr08 191 178 3891 3936 C 14 0.00 1382 reject_low 16 ALIGNMENT 77 Y12-12d18.p1k chr10 177 28 5527 5677 C 150 84.67 1382 ambiguous_tel 1 ALIGNMENT 74 Y12-12d18.p1k chr16 28 177 943822 943972 F 150 84.00 1382 reject_low 14 ALIGNMENT 385 Y12-12d18.p1k chr04 192 1003 1526954 1527764 F 812 83.25 1382 reject_low 3 ALIGNMENT 0 Y12-12d18.p1k chr13 191 178 4035 4080 C 14 0.00 1382 reject_low 13 ALIGNMENT 385 Y12-12d18.p1k chr15 192 1003 1086119 1086929 F 812 83.25 1382 reject_low 5 ALIGNMENT 0 Y12-12d18.p1k chr05 178 191 571737 571782 F 14 0.00 1382 reject_low 6 ALIGNMENT 30 Y12-12d18.p1k chr05 923 848 4463 4537 C 76 81.58 1382 reject_low 10 ALIGNMENT 74 Y12-12d18.p1k chr06 177 28 3242 3392 C 150 84.00 1382 reject_low 15 ALIGNMENT 119 Y12-12d18.q1k chr09 329 638 51 357 F 310 81.94 1490 ambiguous_tel 0 ALIGNMENT 370 Y12-12d18.p1k chr05 192 1003 571783 572593 F 812 82.64 1382 reject_low 6 ALIGNMENT 65 Y12-12d18.p1k chr07 28 177 1085663 1085813 F 150 82.00 1382 reject_low 7 ALIGNMENT 77 Y12-12d18.p1k chr13 177 28 4081 4231 C 150 84.67 1382 reject_low 13 ALIGNMENT 0 Y12-12d18.p1k chr07 178 191 1085814 1085859 F 14 0.00 1382 reject_low 7 ALIGNMENT 406 Y12-12d18.p1k chr09 1003 192 4686 5497 C 812 84.11 1382 ambiguous_tel 0 ALIGNMENT 119 Y12-12d18.q1k chr10 329 638 34 340 F 310 81.94 1490 ambiguous_tel 1 ALIGNMENT 387 Y12-12d18.p1k chr05 713 28 4593 5277 C 686 85.86 1382 reject_low 10 ALIGNMENT 74 Y12-12d18.p1k chr04 28 177 1526757 1526907 F 150 84.00 1382 reject_low 3 ALIGNMENT 368 Y12-12d18.p1k chr07 192 923 1085860 1086588 F 732 84.15 1382 reject_low 7 ALIGNMENT 0 Y12-12d18.p1k chr04 178 191 1526908 1526953 F 14 0.00 1382 reject_low 3 ALIGNMENT 91 Y12-12d18.p1k chr13 339 192 3887 4034 C 148 87.16 1382 reject_low 13 ALIGNMENT 368 Y12-12d18.p1k chr16 923 192 4289 5017 C 732 84.15 1382 reject_low 9 ALIGNMENT 0 Y12-12d18.p1k chr12 178 191 1073109 1073154 F 14 0.00 1382 reject_low 4 ALIGNMENT 72 Y12-12d18.p1k chr05 52 177 571611 571736 F 126 86.51 1382 reject_low 6 ALIGNMENT 0 Y12-12d18.p1k chr16 191 178 5018 5063 C 14 0.00 1382 reject_low 9 ALIGNMENT 0 Y12-12d18.p1k chr12 191 178 9694 9739 C 14 0.00 1382 reject_low 11 ALIGNMENT 68 Y12-12d18.p1k chr02 177 28 4406 4556 C 150 82.67 1382 reject_low 17 ALIGNMENT 91 Y12-12d18.p1k chr12 339 192 4011 4158 C 148 87.16 1382 reject_low 12 ALIGNMENT 74 Y12-12d18.p1k chr08 177 28 3937 4087 C 150 84.00 1382 reject_low 16 ALIGNMENT 65 Y12-12d18.p1k chr14 177 28 5155 5305 C 150 82.00 1382 reject_low 8 ALIGNMENT 88 Y12-12d18.p1k chr08 339 192 3743 3890 C 148 86.49 1382 reject_low 16 ALIGNMENT 0 Y12-12d18.p1k chr02 191 178 4360 4405 C 14 0.00 1382 reject_low 17 ALIGNMENT 0 Y12-12d18.p1k chr16 178 191 943973 944018 F 14 0.00 1382 reject_low 14 ALIGNMENT 74 Y12-12d18.p1k chr12 28 177 1072958 1073108 F 150 84.00 1382 reject_low 4 ALIGNMENT 89 Y12-12d18.p1k chr06 337 192 3050 3195 C 146 86.99 1382 reject_low 15 ALIGNMENT 77 Y12-12d18.p1k chr09 177 28 5544 5694 C 150 84.67 1382 ambiguous_tel 0 ALIGNMENT 0 Y12-12d18.p1k chr15 178 191 1086073 1086118 F 14 0.00 1382 reject_low 5 ALIGNMENT 65 Y12-12d18.p1k chr16 177 28 5064 5214 C 150 82.00 1382 reject_low 9 ALIGNMENT 88 Y12-12d18.p1k chr08 192 339 558472 558619 F 148 86.49 1382 reject_low 18 ALIGNMENT 0 Y12-12d18.p1k chr10 191 178 5481 5526 C 14 0.00 1382 ambiguous_tel 1 ALIGNMENT 0 Y12-12d18.p1k chr09 191 178 5498 5543 C 14 0.00 1382 ambiguous_tel 0 ALIGNMENT 368 Y12-12d18.p1k chr14 923 192 4380 5108 C 732 84.15 1382 reject_low 8 ALIGNMENT 74 Y12-12d18.p1k chr15 28 177 1085922 1086072 F 150 84.00 1382 reject_low 5 ALIGNMENT 385 Y12-12d18.p1k chr12 192 1003 1073155 1073965 F 812 83.25 1382 reject_low 4 ALIGNMENT 91 Y12-12d18.p1k chr12 339 192 9546 9693 C 148 87.16 1382 reject_low 11 ALIGNMENT 74 Y12-12d18.q1k chr12 638 347 1071362 1071651 C 292 77.74 1490 reject_low 2 ALIGNMENT 387 Y12-12d18.p1k chr12 28 713 1066406 1067090 F 686 85.86 1382 reject_low 2 ALIGNMENT 0 Y12-12d18.p1k chr12 191 178 4159 4204 C 14 0.00 1382 reject_low 12 ALIGNMENT 70 Y12-12d18.q1k chr12 330 483 5697 5852 F 154 83.77 1490 reject_low 11 ALIGNMENT 0 Y12-12d19.q1k chr04 849 544 915517 915516 C 306 0.00 1283 reject_low 1 ALIGNMENT 325 Y12-12d19.q1k chr04 543 135 915516 915924 C 409 93.64 1283 reject_low 1 ALIGNMENT 825 Y12-12d19.p1k chr02 1154 25 237604 238749 C 1130 93.45 1349 accept 0 ALIGNMENT 1028 Y12-12d19.q1k chr02 33 1273 235294 236535 F 1241 95.17 1283 accept 0 ALIGNMENT 0 Y12-12d19.q1k chr04 134 62 915925 915924 C 73 0.00 1283 reject_low 1 ALIGNMENT 1058 Y12-12d20.q1k chr02 1277 28 525983 527240 C 1250 96.24 1279 accept 0 ALIGNMENT 985 Y12-12d20.p1k chr02 20 1115 520903 522014 F 1096 97.99 1355 accept 0 ALIGNMENT 1040 Y12-12d21.p1k chr10 1241 20 312114 313347 C 1222 96.07 1337 accept 0 ALIGNMENT 1019 Y12-12d21.q1k chr10 36 1227 308285 309472 F 1192 96.39 1257 accept 0 ALIGNMENT 42 Y12-12d22.q1k chr12 638 786 126757 126905 F 149 77.18 1240 reject_low 1 ALIGNMENT 21 Y12-12d22.q1k chr12 366 410 126470 126514 F 45 82.22 1240 reject_low 1 ALIGNMENT 40 Y12-12d22.q1k chr12 91 213 126198 126320 F 123 78.05 1240 reject_low 1 ALIGNMENT 0 Y12-12d22.q1k chr12 411 637 126515 126756 F 227 0.00 1240 reject_low 1 ALIGNMENT 993 Y12-12d22.p1k chr12 20 1271 179306 180574 F 1252 94.81 1333 accept 0 ALIGNMENT 0 Y12-12d22.q1k chr12 214 365 126321 126469 F 152 0.00 1240 reject_low 1 ALIGNMENT 998 Y12-12d22.q1k chr12 1234 33 181685 182884 C 1202 95.67 1240 accept 0 ALIGNMENT 0 Y12-12d22.q1k chr12 787 880 126905 126904 F 94 0.00 1240 reject_low 1 ALIGNMENT 0 Y12-12d22.q1k chr12 62 90 126198 126197 F 29 0.00 1240 reject_low 1 ALIGNMENT 80 Y12-12d24.p1k chr07 126 45 544573 544654 C 82 100.00 1347 reject_low 6 ALIGNMENT 0 Y12-12d24.p1k chr10 128 720 204732 204731 F 593 0.00 1347 reject_low 7 ALIGNMENT 0 Y12-12d24.p1k chr07 720 127 544574 544573 C 594 0.00 1347 reject_low 6 ALIGNMENT 77 Y12-12d24.p1k chr12 47 128 427133 427214 F 82 98.78 1347 reject_low 5 ALIGNMENT 78 Y12-12d24.p1k chr15 47 126 571958 572037 F 80 100.00 1347 reject_low 13 ALIGNMENT 78 Y12-12d24.p1k chr11 125 46 512967 513046 C 80 100.00 1347 reject_low 9 ALIGNMENT 0 Y12-12d24.p1k chr09 720 127 336339 336338 C 594 0.00 1347 reject_low 10 ALIGNMENT 0 Y12-12d24.q1k chr07 123 124 535212 535548 C 0 0.00 1261 accept 0 ALIGNMENT 78 Y12-12d24.p1k chr13 47 126 463553 463632 F 80 100.00 1347 reject_low 12 ALIGNMENT 0 Y12-12d24.p1k chr13 127 720 463632 463631 F 594 0.00 1347 reject_low 12 ALIGNMENT 0 Y12-12d24.p1k chr12 125 720 793995 793994 F 596 0.00 1347 reject_low 14 ALIGNMENT 0 Y12-12d24.p1k chr12 129 720 427214 427213 F 592 0.00 1347 reject_low 5 ALIGNMENT 82 Y12-12d24.p1k chr10 41 127 355366 355452 F 87 98.85 1347 reject_low 1 ALIGNMENT 0 Y12-12d24.p1k chr09 720 127 324294 324293 C 594 0.00 1347 reject_low 8 ALIGNMENT 79 Y12-12d24.p1k chr04 41 127 568955 569041 F 87 97.70 1347 reject_low 4 ALIGNMENT 0 Y12-12d24.p1k chr10 720 127 374333 374332 C 594 0.00 1347 reject_low 3 ALIGNMENT 78 Y12-12d24.p1k chr09 126 47 336338 336417 C 80 100.00 1347 reject_low 10 ALIGNMENT 78 Y12-12d24.p1k chr10 47 126 541422 541501 F 80 100.00 1347 reject_low 11 ALIGNMENT 0 Y12-12d24.p1k chr04 128 720 569041 569040 F 593 0.00 1347 reject_low 4 ALIGNMENT 0 Y12-12d24.p1k chr10 127 720 541501 541500 F 594 0.00 1347 reject_low 11 ALIGNMENT 79 Y12-12d24.p1k chr09 126 46 324293 324373 C 81 100.00 1347 reject_low 8 ALIGNMENT 81 Y12-12d24.p1k chr10 126 41 374332 374417 C 86 98.84 1347 reject_low 3 ALIGNMENT 0 Y12-12d24.p1k chr10 128 720 355452 355451 F 593 0.00 1347 reject_low 1 ALIGNMENT 0 Y12-12d24.p1k chr14 720 126 519094 519093 C 595 0.00 1347 reject_low 15 ALIGNMENT 79 Y12-12d24.p1k chr10 47 127 204652 204732 F 81 100.00 1347 reject_low 7 ALIGNMENT 0 Y12-12d24.p1k chr02 127 720 406033 406032 F 594 0.00 1347 reject_low 2 ALIGNMENT 0 Y12-12d24.p1k chr11 720 126 512968 512967 C 595 0.00 1347 reject_low 9 ALIGNMENT 77 Y12-12d24.p1k chr12 47 124 793918 793995 F 78 100.00 1347 reject_low 14 ALIGNMENT 88 Y12-12d24.q1k chr07 125 32 535547 535640 C 94 98.94 1261|2,0 accept 0 ALIGNMENT 81 Y12-12d24.p1k chr02 41 126 405948 406033 F 86 98.84 1347 reject_low 2 ALIGNMENT 70 Y12-12d24.p1k chr14 125 55 519093 519163 C 71 100.00 1347 reject_low 15 ALIGNMENT 0 Y12-12d24.p1k chr15 127 720 572037 572036 F 594 0.00 1347 reject_low 13 ALIGNMENT 802 Y12-12d24.p1k chr07 18 1201 531583 532746 F 1184 91.98 1347 accept 0 ALIGNMENT 716 Y12-12d24.q1k chr07 973 121 534370 535214 C 853 96.48 1261|0,3 accept 0 ALIGNMENT 0 Y12-12e02.q1k chr10 917 62 422925 422924 C 856 0.00 1250 reject_low 3 ALIGNMENT 0 Y12-12e02.q1k chr13 62 910 572875 572874 F 849 0.00 1250 reject_low 1 ALIGNMENT 74 Y12-12e02.q1k chr10 991 918 422851 422924 C 74 100.00 1250 reject_low 3 ALIGNMENT 0 Y12-12e02.q1k chr04 912 62 1175899 1175898 C 851 0.00 1250 reject_low 2 ALIGNMENT 939 Y12-12e02.p1k chr10 1114 24 395191 396291 C 1091 96.88 1335 accept 0 ALIGNMENT 74 Y12-12e02.q1k chr13 911 990 572875 572954 F 80 97.50 1250 reject_low 1 ALIGNMENT 0 Y12-12e02.q1k chr15 917 62 976489 976488 C 856 0.00 1250 reject_low 4 ALIGNMENT 75 Y12-12e02.q1k chr04 990 913 1175821 1175898 C 78 98.72 1250 reject_low 2 ALIGNMENT 73 Y12-12e02.q1k chr15 990 918 976416 976488 C 73 100.00 1250 reject_low 4 ALIGNMENT 1022 Y12-12e02.q1k chr10 32 1214 390073 391264 F 1183 96.37 1250 accept 0 ALIGNMENT 0 Y12-12e04.q1k chr08 865 232 287104 287103 C 634 0.00 1311 reject_low 2 ALIGNMENT 0 Y12-12e04.q1k chr04 865 252 1162950 1162949 C 614 0.00 1311 reject_low 1 ALIGNMENT 894 Y12-12e04.p1k chr08 24 1071 286247 287306 F 1048 96.09 1322 accept 0 ALIGNMENT 92 Y12-12e04.q1k chr08 231 35 287103 287300 C 197 83.25 1311 reject_low 2 ALIGNMENT 106 Y12-12e04.q1k chr04 251 35 1162949 1163165 C 217 83.41 1311 reject_low 1 ALIGNMENT 871 Y12-12e04.q1k chr08 1046 35 290109 291132 C 1012 96.64 1311 accept 0 ALIGNMENT 856 Y12-12e05.p1k chr13 31 1100 590391 591452 F 1070 94.67 1479 accept_chi 1 ALIGNMENT 988 Y12-12e05.q1k chr05 1114 38 256374 257459 C 1077 98.14 1315 accept_chi 0 ALIGNMENT 1067 Y12-12e06.p1k chr12 1264 23 461700 462956 C 1242 95.97 1495 accept 0 ALIGNMENT 957 Y12-12e06.q1k chr12 37 1170 466759 467916 F 1134 95.59 1356 reject_low 1 ALIGNMENT 957 Y12-12e06.q1k chr12 37 1170 457622 458779 F 1134 95.59 1356 accept 0 ALIGNMENT 1066 Y12-12e06.p1k chr12 1235 23 452595 453819 C 1213 96.54 1495 reject_low 2 ALIGNMENT 26 Y12-12e07.q1k chr04 1122 1201 1503810 1503888 F 80 81.25 1255 reject_low 2 ALIGNMENT 0 Y12-12e07.q1k chr04 62 1017 1503867 1503866 F 956 0.00 1255 reject_low 1 ALIGNMENT 813 Y12-12e07.q1k chr04 29 1088 1502959 1504009 F 1060 93.87 1255 accept 0 ALIGNMENT 0 Y12-12e07.q1k chr15 62 1103 1060765 1060764 F 1042 0.00 1255 reject_low 3 ALIGNMENT 697 Y12-12e07.p1k chr04 863 18 1506116 1506950 C 846 96.22 1450 accept 0 ALIGNMENT 0 Y12-12e07.q1k chr15 62 1043 1060760 1060759 F 982 0.00 1255 reject_low 4 ALIGNMENT 0 Y12-12e07.q1k chr04 62 1121 1503810 1503809 F 1060 0.00 1255 reject_low 2 ALIGNMENT 48 Y12-12e07.q1k chr04 1018 1163 1503867 1504011 F 146 82.19 1255 reject_low 1 ALIGNMENT 21 Y12-12e07.q1k chr15 1104 1134 1060765 1060794 F 31 93.55 1255 reject_low 3 ALIGNMENT 27 Y12-12e07.q1k chr15 1044 1088 1060760 1060804 F 45 91.11 1255 reject_low 4 ALIGNMENT 979 Y12-12e08.p1k chr04 19 1144 1177070 1178205 F 1126 96.63 1378 accept_chi 1 ALIGNMENT 1096 Y12-12e08.q1k chr05 1234 33 204672 205876 C 1202 97.67 1249 accept_chi 0 ALIGNMENT 823 Y12-12e09.p1k chr15 23 954 219518 220445 F 932 96.78 1624 accept 0 ALIGNMENT 863 Y12-12e09.q1k chr15 1040 35 223241 224255 C 1006 96.42 1404 accept 0 ALIGNMENT 890 Y12-12e10.p1k chr03 19 1123 211522 212656 F 1105 94.39 1482 accept 0 ALIGNMENT 951 Y12-12e11.p1k chr11 1185 21 602484 603651 C 1165 94.76 1393 accept 0 ALIGNMENT 1089 Y12-12e11.q1k chr11 30 1254 599009 600248 F 1225 97.06 1278 accept 0 ALIGNMENT 0 Y12-12e12.p1k chr04 902 510 6556 6555 C 393 0.00 1335 reject_low 2 ALIGNMENT 45 Y12-12e12.p1k chr04 509 303 6555 6761 C 207 74.88 1335 reject_low 2 ALIGNMENT 0 Y12-12e12.p1k chr04 302 62 6762 6761 C 241 0.00 1335 reject_low 2 ALIGNMENT 940 Y12-12e12.p1k chr07 35 1059 1074751 1075786 F 1025 97.76 1335 ambiguous_tel 1 ALIGNMENT 1019 Y12-12e12.q1k chr07 33 1214 1051490 1052684 F 1182 96.19 1287 accept 0 ALIGNMENT 881 Y12-12e13.p1k chr02 1081 24 290224 291282 C 1058 95.65 1382 accept 0 ALIGNMENT 1024 Y12-12e13.q1k chr02 36 1226 287256 288440 F 1191 96.14 1250 accept 0 ALIGNMENT 1026 Y12-12e14.p1k chr12 1234 23 633141 634370 C 1212 96.12 1397 accept 0 ALIGNMENT 1051 Y12-12e14.q1k chr12 29 1242 630048 631267 F 1214 97.20 1250 accept 0 ALIGNMENT 911 Y12-12e15.p1k chr12 1138 20 454253 455361 C 1119 95.08 1508 reject_low 1 ALIGNMENT 0 Y12-12e15.q1k chr12 62 238 485696 485695 F 177 0.00 1306 reject_low 6 ALIGNMENT 0 Y12-12e15.q1k chr12 358 916 482162 482161 F 559 0.00 1306 reject_low 5 ALIGNMENT 857 Y12-12e15.q1k chr12 38 1197 459475 460693 F 1160 93.19 1306 accept 0 ALIGNMENT 0 Y12-12e15.q1k chr12 358 916 485814 485813 F 559 0.00 1306 reject_low 6 ALIGNMENT 0 Y12-12e15.q1k chr12 373 916 489481 489480 F 544 0.00 1306 reject_low 3 ALIGNMENT 310 Y12-12e15.q1k chr12 38 357 468612 468930 F 320 99.69 1306 reject_low 2 ALIGNMENT 911 Y12-12e15.p1k chr12 1138 20 463390 464498 C 1119 95.08 1508 accept 0 ALIGNMENT 128 Y12-12e15.q1k chr12 239 372 489348 489481 F 134 98.51 1306 reject_low 3 ALIGNMENT 0 Y12-12e15.q1k chr12 358 916 472582 472581 F 559 0.00 1306 reject_low 4 ALIGNMENT 0 Y12-12e15.q1k chr12 62 238 482044 482043 F 177 0.00 1306 reject_low 5 ALIGNMENT 0 Y12-12e15.q1k chr12 358 916 468930 468929 F 559 0.00 1306 reject_low 2 ALIGNMENT 119 Y12-12e15.q1k chr12 239 357 472464 472582 F 119 100.00 1306 reject_low 4 ALIGNMENT 119 Y12-12e15.q1k chr12 239 357 485696 485814 F 119 100.00 1306 reject_low 6 ALIGNMENT 0 Y12-12e15.q1k chr12 62 238 489348 489347 F 177 0.00 1306 reject_low 3 ALIGNMENT 119 Y12-12e15.q1k chr12 239 357 482044 482162 F 119 100.00 1306 reject_low 5 ALIGNMENT 0 Y12-12e15.q1k chr12 62 238 472464 472463 F 177 0.00 1306 reject_low 4 ALIGNMENT 0 Y12-12e16.q1k chr15 600 885 94402 94401 F 286 0.00 1323 reject_low 1 ALIGNMENT 957 Y12-12e16.p1k chr14 1189 17 67462 68646 C 1173 95.23 1475 accept 0 ALIGNMENT 23 Y12-12e16.q1k chr15 34 56 93822 93844 F 23 100.00 1323 reject_low 1 ALIGNMENT 1040 Y12-12e16.q1k chr14 34 1228 63998 65207 F 1195 97.15 1323 accept 0 ALIGNMENT 74 Y12-12e16.q1k chr15 481 599 94284 94402 F 119 88.24 1323 reject_low 1 ALIGNMENT 0 Y12-12e16.q1k chr15 57 480 93845 94283 F 424 0.00 1323 reject_low 1 ALIGNMENT 1004 Y12-12e17.p1k chr12 20 1200 864535 865724 F 1181 96.36 1436 accept 0 ALIGNMENT 923 Y12-12e17.q1k chr12 1117 36 867380 868470 C 1082 96.03 1330 accept 0 ALIGNMENT 961 Y12-12e18.q1k chr07 35 1111 546888 547962 F 1077 96.56 1409 accept 0 ALIGNMENT 458 Y12-12e18.p1k chr12 1156 30 811433 812557 C 1127 81.01 1462 reject_low 1 ALIGNMENT 1073 Y12-12e18.p1k chr07 1279 17 549630 550899 C 1263 96.36 1462 accept 0 ALIGNMENT 172 Y12-12e19.p1k chr03 813 1164 293028 293396 F 352 85.51 1369 reject_low 2 ALIGNMENT 929 Y12-12e19.p1k chr03 25 1143 11452 12584 F 1119 95.35 1369 accept 0 ALIGNMENT 873 Y12-12e19.q1k chr03 1107 37 14753 15818 C 1071 96.17 1369 accept 0 ALIGNMENT 890 Y12-12e19.p1k chr03 83 1164 198666 199762 F 1082 95.10 1369 reject_low 1 ALIGNMENT 0 Y12-12e19.p1k chr03 62 82 198666 198665 F 21 0.00 1369 reject_low 1 ALIGNMENT 0 Y12-12e19.p1k chr03 62 812 293028 293027 F 751 0.00 1369 reject_low 2 ALIGNMENT 310 Y12-12e20.q1k chr03 383 29 15463 15818 C 355 97.46 1355 accept 0 ALIGNMENT 947 Y12-12e20.p1k chr03 18 1159 11445 12607 F 1142 95.53 1370 accept 0 ALIGNMENT 908 Y12-12e20.p1k chr03 82 1159 198666 199762 F 1078 95.92 1370 reject_low 1 ALIGNMENT 0 Y12-12e20.p1k chr03 62 811 293028 293027 F 750 0.00 1370 reject_low 2 ALIGNMENT 189 Y12-12e20.p1k chr03 812 1159 293028 293396 F 348 87.64 1370 reject_low 2 ALIGNMENT 0 Y12-12e20.p1k chr03 62 81 198666 198665 F 20 0.00 1370 reject_low 1 ALIGNMENT 1033 Y12-12e23.p1k chr10 1144 32 495920 497031 C 1113 98.65 1336 accept 0 ALIGNMENT 989 Y12-12e23.q1k chr10 37 1162 491932 493041 F 1126 97.87 1211 accept 0 ALIGNMENT 1014 Y12-12f02.p1k chr11 1209 18 323449 324655 C 1192 95.97 1375 accept 0 ALIGNMENT 868 Y12-12f02.q1k chr11 31 1073 320233 321266 F 1043 97.22 1285 accept 0 ALIGNMENT 1001 Y12-12f03.p1k chr02 1191 19 540187 541375 C 1173 96.25 1389 accept 0 ALIGNMENT 1060 Y12-12f03.q1k chr02 32 1287 535848 537106 F 1256 95.54 1424 accept 0 ALIGNMENT 618 Y12-12f04.p1k chr12 313 1115 451419 452259 F 803 93.90 1369 reject_low 1 ALIGNMENT 0 Y12-12f04.p1k chr12 62 312 451419 451418 F 251 0.00 1369 reject_low 1 ALIGNMENT 974 Y12-12f04.q1k chr12 1173 38 463512 464643 C 1136 95.60 1414 accept 0 ALIGNMENT 974 Y12-12f04.q1k chr12 1173 38 454375 455506 C 1136 95.60 1414 reject_low 1 ALIGNMENT 325 Y12-12f04.p1k chr12 661 1106 489754 490217 F 446 93.05 1369 reject_low 2 ALIGNMENT 0 Y12-12f04.p1k chr12 62 660 489754 489753 F 599 0.00 1369 reject_low 2 ALIGNMENT 844 Y12-12f04.p1k chr12 22 1115 460260 461396 F 1094 93.97 1369 accept 0 ALIGNMENT 0 Y12-12f05.q1k chr04 886 402 757400 757399 C 485 0.00 1325 reject_low 12 ALIGNMENT 0 Y12-12f05.q1k chr04 1044 839 757756 759712 C 206 0.00 1325 reject_low 19 ALIGNMENT 540 Y12-12f05.q1k chr04 1020 35 757398 758362 C 986 87.12 1325 reject_low 5 ALIGNMENT 0 Y12-12f05.q1k chr04 886 807 757400 757399 C 80 0.00 1325 reject_low 6 ALIGNMENT 410 Y12-12f05.q1k chr04 1146 372 759026 759774 C 775 87.48 1325 reject_low 9 ALIGNMENT 584 Y12-12f05.q1k chr04 1144 35 758068 759130 C 1110 87.30 1325 reject_low 4 ALIGNMENT 0 Y12-12f05.q1k chr04 886 189 757400 757399 C 698 0.00 1325 reject_low 13 ALIGNMENT 471 Y12-12f05.q1k chr04 806 35 757399 758170 C 772 88.60 1325 reject_low 6 ALIGNMENT 170 Y12-12f05.q1k chr04 1146 848 759410 759724 C 299 87.96 1325 reject_low 17 ALIGNMENT 635 Y12-12f05.q1k chr04 1041 35 757782 758746 C 1007 89.97 1325 reject_low 8 ALIGNMENT 27 Y12-12f05.q1k chr04 1144 1062 757855 757950 C 83 83.13 1325 reject_low 16 ALIGNMENT 0 Y12-12f05.q1k chr04 1061 62 757951 757950 C 1000 0.00 1325 reject_low 16 ALIGNMENT 39 Y12-12f05.q1k chr04 625 564 759713 759774 C 62 88.71 1325 reject_low 18 ALIGNMENT 0 Y12-12f05.q1k chr04 158 62 759775 759774 C 97 0.00 1325 reject_low 11,14,17 ALIGNMENT 0 Y12-12f05.q1k chr04 776 62 759775 759774 C 715 0.00 1325 reject_low 19 ALIGNMENT 0 Y12-12f05.q1k chr04 227 221 759727 759712 C 7 0.00 1325 reject_low 11 ALIGNMENT 0 Y12-12f05.q1k chr04 847 221 759725 759712 C 627 0.00 1325 reject_low 17 ALIGNMENT 28 Y12-12f05.q1k chr04 1144 1045 757642 757755 C 100 81.00 1325 reject_low 8,10,18,19 ALIGNMENT 0 Y12-12f05.q1k chr04 990 62 759775 759774 C 929 0.00 1325 reject_low 15 ALIGNMENT 0 Y12-12f05.q1k chr04 1044 1042 757756 757781 C 3 0.00 1325 reject_low 8 ALIGNMENT 548 Y12-12f05.q1k chr04 1041 35 757995 758938 C 1007 87.69 1325 reject_low 10 ALIGNMENT 0 Y12-12f05.q1k chr04 886 594 757400 757399 C 293 0.00 1325 reject_low 7 ALIGNMENT 0 Y12-12f05.q1k chr04 632 221 759727 759712 C 412 0.00 1325 reject_low 14 ALIGNMENT 39 Y12-12f05.q1k chr04 220 159 759713 759774 C 62 88.71 1325 reject_low 11,14,17 ALIGNMENT 130 Y12-12f05.q1k chr04 188 35 757399 757552 C 154 94.81 1325 reject_low 13 ALIGNMENT 0 Y12-12f05.q1k chr04 1044 1042 757756 757994 C 3 0.00 1325 reject_low 10 ALIGNMENT 47 Y12-12f05.q1k chr04 1134 991 759616 759774 C 144 81.25 1325 reject_low 15 ALIGNMENT 1062 Y12-12f05.p1k chr04 19 1169 754131 755289 F 1151 98.35 1451 accept 0 ALIGNMENT 735 Y12-12f05.q1k chr04 1144 35 757450 758554 C 1110 90.54 1325 accept 0 ALIGNMENT 0 Y12-12f05.q1k chr04 1044 626 757756 759712 C 419 0.00 1325 reject_low 18 ALIGNMENT 213 Y12-12f05.q1k chr04 401 35 757399 757744 C 367 88.56 1325 reject_low 12 ALIGNMENT 0 Y12-12f05.q1k chr04 371 62 759775 759774 C 310 0.00 1325 reject_low 9 ALIGNMENT 38 Y12-12f05.q1k chr04 838 777 759713 759774 C 62 88.71 1325 reject_low 19 ALIGNMENT 592 Y12-12f05.q1k chr04 1146 35 758450 759514 C 1112 87.50 1325 reject_low 3 ALIGNMENT 526 Y12-12f05.q1k chr04 1146 228 758834 759726 C 919 88.47 1325 reject_low 11 ALIGNMENT 277 Y12-12f05.q1k chr04 1146 633 759218 759726 C 514 87.55 1325 reject_low 14 ALIGNMENT 453 Y12-12f05.q1k chr04 593 37 757399 757955 C 557 94.08 1325 reject_low 7 ALIGNMENT 596 Y12-12f05.q1k chr04 1146 35 758258 759322 C 1112 87.59 1325 reject_low 2 ALIGNMENT 599 Y12-12f05.q1k chr04 1144 35 758644 759706 C 1110 87.75 1325 reject_low 1 ALIGNMENT 0 Y12-12f05.q1k chr04 563 62 759775 759774 C 502 0.00 1325 reject_low 18 ALIGNMENT 967 Y12-12f06.p1k chr04 1211 24 978726 979934 C 1188 95.12 1463 accept 0 ALIGNMENT 1041 Y12-12f06.q1k chr04 37 1260 976023 977257 F 1224 95.75 1387 accept 0 ALIGNMENT 1040 Y12-12f07.q1k chr15 36 1279 367973 369220 F 1244 95.26 1279 accept 0 ALIGNMENT 980 Y12-12f07.p1k chr15 1182 18 373077 374260 C 1165 96.39 1406 accept 0 ALIGNMENT 1059 Y12-12f08.q1k chr12 35 1249 461153 462376 F 1215 96.30 1255 accept 1 ALIGNMENT 1028 Y12-12f08.p1k chr12 1164 25 456036 457189 C 1140 97.63 1377 accept 0 ALIGNMENT 1059 Y12-12f08.q1k chr12 35 1249 452016 453239 F 1215 96.30 1255 accept 0 ALIGNMENT 1028 Y12-12f08.p1k chr12 1164 25 465173 466326 C 1140 97.63 1377 accept 1 ALIGNMENT 0 Y12-12f08.q1k chr12 595 847 490543 490542 F 253 0.00 1255 reject_low 2 ALIGNMENT 552 Y12-12f08.q1k chr12 35 594 489984 490543 F 560 99.64 1255 reject_low 2 ALIGNMENT 913 Y12-12f09.p1k chr02 1104 28 206041 207135 C 1077 96.75 1474 accept 0 ALIGNMENT 1023 Y12-12f09.q1k chr02 37 1217 202809 204000 F 1181 95.77 1507 accept 0 ALIGNMENT 445 Y12-12f11.q1k chrm 539 1281 39141 39880 F 743 93.14 1308 accept 0 ALIGNMENT 36 Y12-12f11.p1k chrm 899 840 53206 53267 C 60 86.67 1416 reject_low 5 ALIGNMENT 21 Y12-12f11.p1k chrm 879 856 65898 65921 C 24 100.00 1416 reject_low 8 ALIGNMENT 780 Y12-12f11.p1k chrm 1026 23 40205 41206 C 1004 96.81 1416 accept 0 ALIGNMENT 31 Y12-12f11.p1k chrm 898 840 65673 65732 C 59 84.75 1416 reject_low 7 ALIGNMENT 0 Y12-12f11.p1k chrm 839 62 77100 77099 C 778 0.00 1416 reject_low 6 ALIGNMENT 0 Y12-12f11.p1k chr09 142 793 7244 7243 F 652 0.00 1416 reject_low 1 ALIGNMENT 0 Y12-12f11.p1k chrm 839 62 55464 55463 C 778 0.00 1416 reject_low 3 ALIGNMENT 0 Y12-12f11.p1k chrm 840 62 12393 12392 C 779 0.00 1416 reject_low 4 ALIGNMENT 37 Y12-12f11.p1k chrm 894 840 77043 77099 C 55 89.09 1416 reject_low 6 ALIGNMENT 426 Y12-12f11.q1k chrm 34 524 36464 36954 F 491 100.00 1308 accept 0 ALIGNMENT 38 Y12-12f11.p1k chrm 905 841 12326 12392 C 65 86.15 1416 reject_low 4 ALIGNMENT 0 Y12-12f11.p1k chrm 839 62 65733 65732 C 778 0.00 1416 reject_low 7 ALIGNMENT 0 Y12-12f11.p1k chrm 839 62 53268 53267 C 778 0.00 1416 reject_low 5 ALIGNMENT 0 Y12-12f11.p1k chrm 855 62 65922 65921 C 794 0.00 1416 reject_low 8 ALIGNMENT 100 Y12-12f11.p1k chr10 23 141 7109 7227 F 119 99.16 1416 reject_low 2 ALIGNMENT 0 Y12-12f11.p1k chr10 142 793 7227 7226 F 652 0.00 1416 reject_low 2 ALIGNMENT 100 Y12-12f11.p1k chr09 23 141 7126 7244 F 119 99.16 1416 reject_low 1 ALIGNMENT 36 Y12-12f11.p1k chrm 909 840 55391 55463 C 70 85.71 1416 reject_low 3 ALIGNMENT 0 Y12-12f11.q1k chrm 525 538 36955 39140 F 14 0.00 1308 accept 0 ALIGNMENT 942 Y12-12f12.q1k chr16 1103 35 283902 284977 C 1069 96.73 1274 accept 0 ALIGNMENT 1042 Y12-12f12.p1k chr16 19 1174 279776 280938 F 1156 97.66 1393 accept 0 ALIGNMENT 1059 Y12-12f13.q1k chr15 28 1277 198993 200241 F 1250 96.00 1281 accept 0 ALIGNMENT 1017 Y12-12f13.p1k chr15 1160 24 202258 203409 C 1137 97.19 1377 accept 0 ALIGNMENT 0 Y12-12f14.q1k chr10 900 215 156469 156468 C 686 0.00 1241 reject_low 1 ALIGNMENT 360 Y12-12f14.p1k chr10 662 1125 153422 153902 F 464 94.18 1330 reject_low 1 ALIGNMENT 0 Y12-12f14.p1k chr10 62 661 153422 153421 F 600 0.00 1330 reject_low 1 ALIGNMENT 960 Y12-12f14.p1k chr11 1125 21 555336 556458 C 1105 97.29 1330 accept 0 ALIGNMENT 130 Y12-12f14.q1k chr10 214 32 156468 156651 C 183 90.71 1241 reject_low 1 ALIGNMENT 1008 Y12-12f14.q1k chr11 32 1214 551701 552895 F 1183 96.03 1241 accept 0 ALIGNMENT 0 Y12-12f15.p1k chr11 941 62 141095 141094 C 880 0.00 1443 reject_low 7 ALIGNMENT 59 Y12-12f15.p1k chr09 935 1010 370407 370484 F 76 93.42 1443 reject_low 6 ALIGNMENT 61 Y12-12f15.p1k chr11 1016 942 141018 141094 C 75 94.67 1443 reject_low 7 ALIGNMENT 0 Y12-12f15.p1k chr09 62 941 197589 197588 F 880 0.00 1443 reject_low 13 ALIGNMENT 0 Y12-12f15.p1k chr05 941 62 487398 487397 C 880 0.00 1443 reject_low 11 ALIGNMENT 62 Y12-12f15.p1k chr07 942 1021 541854 541935 F 80 93.75 1443 reject_low 5 ALIGNMENT 978 Y12-12f15.q1k chr16 38 1146 205532 206650 F 1109 97.20 1322 accept 0 ALIGNMENT 901 Y12-12f15.p1k chr16 1104 27 210088 211180 C 1078 96.66 1443 accept 0 ALIGNMENT 58 Y12-12f15.p1k chr05 942 1010 354930 355000 F 69 95.65 1443 reject_low 10 ALIGNMENT 0 Y12-12f15.p1k chr09 62 934 370407 370406 F 873 0.00 1443 reject_low 6 ALIGNMENT 58 Y12-12f15.p1k chr07 1020 918 401521 401624 C 103 87.38 1443 reject_low 1 ALIGNMENT 61 Y12-12f15.p1k chr02 936 1026 645156 645247 F 91 91.21 1443 reject_low 2 ALIGNMENT 58 Y12-12f15.p1k chr05 1010 942 487327 487397 C 69 95.65 1443 reject_low 11 ALIGNMENT 0 Y12-12f15.p1k chr12 62 940 797177 797176 F 879 0.00 1443 reject_low 8 ALIGNMENT 0 Y12-12f15.p1k chr05 62 941 177098 177097 F 880 0.00 1443 reject_low 9 ALIGNMENT 0 Y12-12f15.p1k chr07 62 941 541854 541853 F 880 0.00 1443 reject_low 5 ALIGNMENT 0 Y12-12f15.p1k chr02 62 935 645156 645155 F 874 0.00 1443 reject_low 2 ALIGNMENT 0 Y12-12f15.p1k chr07 62 932 328577 328576 F 871 0.00 1443 reject_low 3 ALIGNMENT 59 Y12-12f15.p1k chr12 941 1010 797177 797248 F 70 95.71 1443 reject_low 8 ALIGNMENT 0 Y12-12f15.p1k chr05 62 941 354930 354929 F 880 0.00 1443 reject_low 10 ALIGNMENT 58 Y12-12f15.p1k chr10 1010 942 115935 116005 C 69 95.65 1443 reject_low 12 ALIGNMENT 0 Y12-12f15.p1k chr10 941 62 116006 116005 C 880 0.00 1443 reject_low 12 ALIGNMENT 45 Y12-12f15.p1k chr09 942 1002 197589 197650 F 61 91.80 1443 reject_low 13 ALIGNMENT 69 Y12-12f15.p1k chr07 933 1015 328577 328661 F 83 95.18 1443 reject_low 3 ALIGNMENT 62 Y12-12f15.p1k chr03 1021 942 82451 82532 C 80 93.75 1443 reject_low 4 ALIGNMENT 0 Y12-12f15.p1k chr03 941 62 82533 82532 C 880 0.00 1443 reject_low 4 ALIGNMENT 58 Y12-12f15.p1k chr05 942 1010 177098 177168 F 69 95.65 1443 reject_low 9 ALIGNMENT 0 Y12-12f15.p1k chr07 917 62 401625 401624 C 856 0.00 1443 reject_low 1 ALIGNMENT 985 Y12-12f16.p1k chr12 1138 18 153387 154521 C 1121 97.23 1450 accept 0 ALIGNMENT 969 Y12-12f16.q1k chr12 36 1137 149244 150356 F 1102 96.91 1310 accept 0 ALIGNMENT 900 Y12-12f17.q1k chr15 38 1107 740046 741128 F 1070 95.33 1323 accept 0 ALIGNMENT 933 Y12-12f17.p1k chr15 1046 20 743376 744414 C 1027 98.15 1358 accept 0 ALIGNMENT 654 Y12-12f18.q1k chr12 36 815 148650 149448 F 780 96.03 1204 accept_chi 0 ALIGNMENT 441 Y12-12f18.p1k chr12 20 825 117940 118737 F 806 86.60 1569 accept_chi 1 ALIGNMENT 0 Y12-12f19.p1k chr10 586 62 150105 150104 C 525 0.00 1472 reject_low 3 ALIGNMENT 22 Y12-12f19.p1k chr14 590 617 70028 70055 F 28 100.00 1472 reject_low 4 ALIGNMENT 0 Y12-12f19.p1k chr10 918 618 150075 150074 C 301 0.00 1472 reject_low 3 ALIGNMENT 20 Y12-12f19.p1k chr13 592 616 514628 514652 F 25 100.00 1472 reject_low 6 ALIGNMENT 21 Y12-12f19.p1k chr10 617 587 150074 150104 C 31 93.55 1472 reject_low 3 ALIGNMENT 0 Y12-12f19.p1k chr13 617 918 514652 514651 F 302 0.00 1472 reject_low 6 ALIGNMENT 24 Y12-12f19.p1k chr07 589 615 379165 379191 F 27 100.00 1472 reject_low 2 ALIGNMENT 891 Y12-12f19.q1k chr02 1097 35 652759 653837 C 1063 95.30 1298 accept 0 ALIGNMENT 0 Y12-12f19.p1k chr09 918 616 169452 169451 C 303 0.00 1472 reject_low 5 ALIGNMENT 0 Y12-12f19.p1k chr02 617 918 780466 780465 F 302 0.00 1472 reject_low 1 ALIGNMENT 0 Y12-12f19.p1k chr13 62 591 514628 514627 F 530 0.00 1472 reject_low 6 ALIGNMENT 0 Y12-12f19.p1k chr02 62 585 780436 780435 F 524 0.00 1472 reject_low 1 ALIGNMENT 24 Y12-12f19.p1k chr02 586 616 780436 780466 F 31 96.77 1472 reject_low 1 ALIGNMENT 0 Y12-12f19.p1k chr07 616 918 379191 379190 F 303 0.00 1472 reject_low 2 ALIGNMENT 20 Y12-12f19.p1k chr09 615 586 169451 169480 C 30 93.33 1472 reject_low 5 ALIGNMENT 0 Y12-12f19.p1k chr09 585 62 169481 169480 C 524 0.00 1472 reject_low 5 ALIGNMENT 0 Y12-12f19.p1k chr14 62 589 70028 70027 F 528 0.00 1472 reject_low 4 ALIGNMENT 0 Y12-12f19.p1k chr14 618 918 70055 70054 F 301 0.00 1472 reject_low 4 ALIGNMENT 1015 Y12-12f19.p1k chr02 25 1215 648768 649970 F 1191 96.14 1472 accept 0 ALIGNMENT 0 Y12-12f19.p1k chr07 62 588 379165 379164 F 527 0.00 1472 reject_low 2 ALIGNMENT 82 Y12-12f20.q1k chr01 312 644 189420 189752 F 333 77.78 1310 reject_low 31 ALIGNMENT 0 Y12-12f20.q1k chr08 311 62 543942 543941 C 250 0.00 1310 reject_low 28 ALIGNMENT 0 Y12-12f20.q1k chr15 62 311 600403 600402 F 250 0.00 1310 reject_low 10 ALIGNMENT 0 Y12-12f20.q1k chr07 62 310 535214 535213 F 249 0.00 1310 reject_low 24 ALIGNMENT 0 Y12-12f20.q1k chr07 626 905 932004 932003 F 280 0.00 1310 reject_low 12 ALIGNMENT 969 Y12-12f20.p1k chr03 1119 30 154688 155786 C 1090 98.07 1370 reject_bad_break 0 ALIGNMENT 0 Y12-12f20.q1k chr15 624 905 600714 600713 F 282 0.00 1310 reject_low 10 ALIGNMENT 272 Y12-12f20.q1k chr13 685 1007 184158 184481 F 323 96.90 1310 reject_low 13 ALIGNMENT 259 Y12-12f20.q1k chr14 633 312 96620 96941 C 322 95.65 1310 reject_low 4 ALIGNMENT 0 Y12-12f20.q1k chr07 62 311 931691 931690 F 250 0.00 1310 reject_low 12 ALIGNMENT 0 Y12-12f20.q1k chr13 905 626 362605 362604 C 280 0.00 1310 reject_low 7 ALIGNMENT 0 Y12-12f20.q1k chr07 626 695 535529 535763 F 70 0.00 1310 reject_low 24 ALIGNMENT 0 Y12-12f20.q1k chr16 62 311 560478 560477 F 250 0.00 1310 reject_low 8 ALIGNMENT 260 Y12-12f20.q1k chr02 308 625 221036 221355 F 318 96.23 1310 reject_low 21 ALIGNMENT 0 Y12-12f20.q1k chr02 62 311 265161 265160 F 250 0.00 1310 reject_low 27 ALIGNMENT 198 Y12-12f20.q1k chr01 1029 696 160237 160575 C 334 88.62 1310 reject_low 34 ALIGNMENT 100 Y12-12f20.q1k chr01 696 1027 189420 189751 F 332 79.52 1310 reject_low 35 ALIGNMENT 290 Y12-12f20.q1k chr14 1027 696 96610 96941 C 332 97.59 1310 reject_low 17 ALIGNMENT 281 Y12-12f20.q1k chr07 696 1027 931691 932022 F 332 96.69 1310 reject_low 20 ALIGNMENT 0 Y12-12f20.q1k chr13 695 62 362918 362917 C 634 0.00 1310 reject_low 15 ALIGNMENT 0 Y12-12f20.q1k chr15 560 905 594759 594758 F 346 0.00 1310 reject_low 32 ALIGNMENT 0 Y12-12f20.q1k chr15 62 813 594630 594629 F 752 0.00 1310 reject_low 33 ALIGNMENT 0 Y12-12f20.q1k chr16 62 695 560478 560477 F 634 0.00 1310 reject_low 19 ALIGNMENT 261 Y12-12f20.q1k chr07 696 1027 535764 536101 F 332 94.88 1310 reject_low 24 ALIGNMENT 280 Y12-12f20.q1k chr07 1007 684 823000 823323 C 324 97.53 1310 reject_low 3 ALIGNMENT 258 Y12-12f20.q1k chr03 695 1015 151517 151836 F 321 95.33 1310 reject_low 1 ALIGNMENT 0 Y12-12f20.q1k chr02 62 694 221039 221038 F 633 0.00 1310 reject_low 18 ALIGNMENT 297 Y12-12f20.q1k chr07 695 1027 535214 535546 F 333 98.20 1310 reject_low 16 ALIGNMENT 240 Y12-12f20.q1k chr07 312 645 535764 536103 F 334 92.81 1310 reject_low 2 ALIGNMENT 256 Y12-12f20.q1k chr16 312 633 560478 560799 F 322 95.34 1310 reject_low 8 ALIGNMENT 0 Y12-12f20.q1k chr03 696 1027 151901 151895 F 332 0.00 1310 reject_bad_break 0 ALIGNMENT 0 Y12-12f20.q1k chr01 645 905 189752 189751 F 261 0.00 1310 reject_low 31 ALIGNMENT 299 Y12-12f20.q1k chr13 1027 696 362586 362917 C 332 98.49 1310 reject_low 15 ALIGNMENT 0 Y12-12f20.q1k chr13 62 311 184170 184169 F 250 0.00 1310 reject_low 11 ALIGNMENT 272 Y12-12f20.q1k chr08 1007 696 543630 543941 C 312 97.76 1310 reject_low 28 ALIGNMENT 259 Y12-12f20.q1k chr06 1015 696 161810 162129 C 320 95.62 1310 reject_low 30 ALIGNMENT 272 Y12-12f20.q1k chr02 696 1007 265161 265472 F 312 97.76 1310 reject_low 27 ALIGNMENT 259 Y12-12f20.q1k chr15 311 623 594820 595132 F 313 96.49 1310 reject_low 23,25 ALIGNMENT 0 Y12-12f20.q1k chr07 62 694 535214 535213 F 633 0.00 1310 reject_low 16 ALIGNMENT 0 Y12-12f20.q1k chr16 634 905 560799 560798 F 272 0.00 1310 reject_low 8 ALIGNMENT 0 Y12-12f20.q1k chr01 62 311 183136 183135 F 250 0.00 1310 reject_low 35 ALIGNMENT 0 Y12-12f20.q1k chr01 695 62 166164 166163 C 634 0.00 1310 reject_low 29 ALIGNMENT 0 Y12-12f20.q1k chr07 62 695 931691 931690 F 634 0.00 1310 reject_low 20 ALIGNMENT 0 Y12-12f20.q1k chr07 646 905 536103 536102 F 260 0.00 1310 reject_low 2 ALIGNMENT 0 Y12-12f20.q1k chr15 62 429 594630 594629 F 368 0.00 1310 reject_low 32 ALIGNMENT 275 Y12-12f20.q1k chr15 695 1007 594820 595132 F 313 98.08 1310 reject_low 23 ALIGNMENT 0 Y12-12f20.q1k chr03 62 694 151517 151516 F 633 0.00 1310 reject_low 1 ALIGNMENT 0 Y12-12f20.q1k chr13 62 684 184158 184157 F 623 0.00 1310 reject_low 13 ALIGNMENT 0 Y12-12f20.q1k chr03 1016 1027 151837 151895 F 12 0.00 1310 reject_low 1 ALIGNMENT 73 Y12-12f20.q1k chr15 430 559 594630 594759 F 130 88.46 1310 reject_low 32 ALIGNMENT 259 Y12-12f20.q1k chr07 623 311 823000 823312 C 313 96.49 1310 reject_low 9 ALIGNMENT 0 Y12-12f20.q1k chr06 695 632 162130 161809 C 64 0.00 1310 reject_low 30 ALIGNMENT 81 Y12-12f20.q1k chr15 814 943 594630 594759 F 130 90.00 1310 reject_low 33 ALIGNMENT 300 Y12-12f20.q1k chr02 696 1028 226624 226956 F 333 98.50 1310 reject_low 21 ALIGNMENT 255 Y12-12f20.q1k chr13 312 623 184170 184481 F 312 96.15 1310 reject_low 11 ALIGNMENT 0 Y12-12f20.q1k chr07 310 62 823313 823312 C 249 0.00 1310 reject_low 9 ALIGNMENT 275 Y12-12f20.q1k chr15 696 1007 600403 600714 F 312 98.08 1310 reject_low 25 ALIGNMENT 0 Y12-12f20.q1k chr11 695 62 517427 517426 C 634 0.00 1310 reject_low 14 ALIGNMENT 0 Y12-12f20.q1k chr02 624 695 265473 265160 F 72 0.00 1310 reject_low 27 ALIGNMENT 264 Y12-12f20.q1k chr07 311 625 535214 535528 F 315 96.83 1310 reject_low 24 ALIGNMENT 0 Y12-12f20.q1k chr13 311 62 362918 362917 C 250 0.00 1310 reject_low 7 ALIGNMENT 258 Y12-12f20.q1k chr15 312 623 600403 600714 F 312 96.47 1310 reject_low 10 ALIGNMENT 0 Y12-12f20.q1k chr02 62 307 221036 221035 F 246 0.00 1310 reject_low 21 ALIGNMENT 0 Y12-12f20.q1k chr08 695 624 543942 543629 C 72 0.00 1310 reject_low 28 ALIGNMENT 263 Y12-12f20.q1k chr02 312 625 226624 226937 F 314 96.82 1310 reject_low 5 ALIGNMENT 90 Y12-12f20.q1k chr03 1028 1204 151896 152084 F 177 87.01 1310 reject_bad_break 0 reject_low 1 ALIGNMENT 0 Y12-12f20.q1k chr15 624 695 595133 600402 F 72 0.00 1310 reject_low 25 ALIGNMENT 255 Y12-12f20.q1k chr08 623 312 543630 543941 C 312 96.15 1310 reject_low 28 ALIGNMENT 238 Y12-12f20.q1k chr01 696 1027 183136 183468 F 332 92.47 1310 reject_low 22 ALIGNMENT 0 Y12-12f20.q1k chr01 695 634 160576 165836 C 62 0.00 1310 reject_low 34 ALIGNMENT 0 Y12-12f20.q1k chr11 905 626 517114 517113 C 280 0.00 1310 reject_low 6 ALIGNMENT 287 Y12-12f20.q1k chr02 695 1027 221039 221373 F 333 97.30 1310 reject_low 18 ALIGNMENT 166 Y12-12f20.q1k chr01 633 312 160249 160575 C 322 86.34 1310 reject_low 26 ALIGNMENT 0 Y12-12f20.q1k chr14 311 62 96942 96941 C 250 0.00 1310 reject_low 4 ALIGNMENT 0 Y12-12f20.q1k chr01 311 62 160576 160575 C 250 0.00 1310 reject_low 26 ALIGNMENT 0 Y12-12f20.q1k chr07 905 624 823001 823000 C 282 0.00 1310 reject_low 9 ALIGNMENT 263 Y12-12f20.q1k chr13 625 312 362604 362917 C 314 96.82 1310 reject_low 7 ALIGNMENT 0 Y12-12f20.q1k chr02 626 905 226937 226936 F 280 0.00 1310 reject_low 5 ALIGNMENT 284 Y12-12f20.q1k chr16 696 1027 560478 560809 F 332 96.99 1310 reject_low 19 ALIGNMENT 0 Y12-12f20.q1k chr01 62 695 183136 183135 F 634 0.00 1310 reject_low 22 ALIGNMENT 196 Y12-12f20.q1k chr01 1027 696 165827 166163 C 332 88.55 1310 reject_low 29 ALIGNMENT 211 Y12-12f20.q1k chr01 312 631 183136 183456 F 320 90.94 1310 reject_low 35 ALIGNMENT 0 Y12-12f20.q1k chr11 311 62 517427 517426 C 250 0.00 1310 reject_low 6 ALIGNMENT 0 Y12-12f20.q1k chr02 62 311 226624 226623 F 250 0.00 1310 reject_low 5 ALIGNMENT 0 Y12-12f20.q1k chr13 624 905 184481 184480 F 282 0.00 1310 reject_low 11 ALIGNMENT 0 Y12-12f20.q1k chr07 683 62 823324 823323 C 622 0.00 1310 reject_low 3 ALIGNMENT 0 Y12-12f20.q1k chr14 695 62 96942 96941 C 634 0.00 1310 reject_low 17 ALIGNMENT 0 Y12-12f20.q1k chr07 62 311 535764 535763 F 250 0.00 1310 reject_low 2 ALIGNMENT 263 Y12-12f20.q1k chr11 625 312 517113 517426 C 314 96.82 1310 reject_low 6 ALIGNMENT 0 Y12-12f20.q1k chr01 62 311 189420 189419 F 250 0.00 1310 reject_low 31 ALIGNMENT 299 Y12-12f20.q1k chr11 1027 696 517095 517426 C 332 98.49 1310 reject_low 14 ALIGNMENT 564 Y12-12f20.q1k chr03 31 695 151235 151900 F 665 96.69 1310 reject_bad_break 0 ALIGNMENT 0 Y12-12f20.q1k chr06 311 62 162130 162129 C 250 0.00 1310 reject_low 30 ALIGNMENT 248 Y12-12f20.q1k chr06 631 312 161810 162129 C 320 94.69 1310 reject_low 30 ALIGNMENT 0 Y12-12f20.q1k chr15 62 310 594820 594819 F 249 0.00 1310 reject_low 23,25 ALIGNMENT 0 Y12-12f20.q1k chr15 624 694 595133 594819 F 71 0.00 1310 reject_low 23 ALIGNMENT 0 Y12-12f20.q1k chr01 632 695 183457 189419 F 64 0.00 1310 reject_low 35 ALIGNMENT 166 Y12-12f20.q1k chr01 633 312 165837 166163 C 322 86.34 1310 reject_low 34 ALIGNMENT 0 Y12-12f20.q1k chr14 905 634 96621 96620 C 272 0.00 1310 reject_low 4 ALIGNMENT 255 Y12-12f20.q1k chr02 312 623 265161 265472 F 312 96.15 1310 reject_low 27 ALIGNMENT 0 Y12-12f20.q1k chr01 311 62 166164 166163 C 250 0.00 1310 reject_low 34 ALIGNMENT 0 Y12-12f20.q1k chr02 626 695 221356 226623 F 70 0.00 1310 reject_low 21 ALIGNMENT 254 Y12-12f20.q1k chr07 312 625 931691 932004 F 314 95.86 1310 reject_low 12 ALIGNMENT 0 Y12-12f20.q1k chr01 905 634 160250 160249 C 272 0.00 1310 reject_low 26 ALIGNMENT 0 Y12-12f21.p1k chr02 480 808 227168 227167 F 329 0.00 1381 reject_low 2 ALIGNMENT 0 Y12-12f21.p1k chr04 367 808 668426 668425 F 442 0.00 1381 reject_low 10 ALIGNMENT 191 Y12-12f21.p1k chr07 36 366 712212 712544 F 331 87.92 1381 reject_low 16 ALIGNMENT 206 Y12-12f21.p1k chr05 376 31 249924 250272 C 346 88.44 1381 reject_low 3 ALIGNMENT 191 Y12-12f21.p1k chr07 36 366 707201 707533 F 331 87.92 1381 reject_low 15 ALIGNMENT 0 Y12-12f21.p1k chr01 367 808 182948 182947 F 442 0.00 1381 reject_low 8 ALIGNMENT 191 Y12-12f21.p1k chr11 366 36 202295 202627 C 331 87.92 1381 reject_low 18 ALIGNMENT 188 Y12-12f21.p1k chr14 36 366 726237 726570 F 331 87.31 1381 reject_low 19 ALIGNMENT 0 Y12-12f21.p1k chr01 387 62 182599 182598 C 326 0.00 1381 reject_low 1 ALIGNMENT 164 Y12-12f21.p1k chr07 36 306 401621 401894 F 271 88.93 1381 reject_low 21 ALIGNMENT 203 Y12-12f21.p1k chr02 36 366 197719 198052 F 331 88.82 1381 reject_low 9 ALIGNMENT 1004 Y12-12f21.q1k chr12 36 1133 161708 162794 F 1098 98.36 1190 accept 0 ALIGNMENT 209 Y12-12f21.p1k chr05 366 36 434632 434965 C 331 89.43 1381 reject_low 5 ALIGNMENT 191 Y12-12f21.p1k chr09 36 366 205219 205551 F 331 87.92 1381 reject_low 17 ALIGNMENT 0 Y12-12f21.p1k chr12 343 808 793871 793870 F 466 0.00 1381 reject_low 22 ALIGNMENT 206 Y12-12f21.p1k chr16 36 366 880384 880717 F 331 89.12 1381 reject_low 7 ALIGNMENT 202 Y12-12f21.p1k chr07 28 365 735980 736321 F 338 88.46 1381 reject_low 4 ALIGNMENT 183 Y12-12f21.p1k chr09 32 366 324387 324727 F 335 86.87 1381 reject_low 20 ALIGNMENT 0 Y12-12f21.p1k chr16 367 808 880717 880716 F 442 0.00 1381 reject_low 7 ALIGNMENT 0 Y12-12f21.p1k chr11 808 367 202296 202295 C 442 0.00 1381 reject_low 18 ALIGNMENT 192 Y12-12f21.p1k chr01 28 366 182608 182948 F 339 87.61 1381 reject_low 8 ALIGNMENT 89 Y12-12f21.p1k chr02 389 479 227078 227168 F 91 100.00 1381 reject_low 2 ALIGNMENT 0 Y12-12f21.p1k chr14 367 808 726570 726569 F 442 0.00 1381 reject_low 19 ALIGNMENT 142 Y12-12f21.p1k chr12 38 342 793556 793871 F 305 84.26 1381 reject_low 22 ALIGNMENT 206 Y12-12f21.p1k chr04 366 36 945954 946287 C 331 89.12 1381 reject_low 6 ALIGNMENT 200 Y12-12f21.p1k chr08 366 36 146329 146662 C 331 88.52 1381 reject_low 11 ALIGNMENT 0 Y12-12f21.p1k chr12 367 808 374334 374333 F 442 0.00 1381 reject_low 12 ALIGNMENT 0 Y12-12f21.p1k chr02 367 808 198052 198051 F 442 0.00 1381 reject_low 9 ALIGNMENT 0 Y12-12f21.p1k chr07 808 367 319432 319431 C 442 0.00 1381 reject_low 14 ALIGNMENT 0 Y12-12f21.p1k chr02 62 388 227078 227077 F 327 0.00 1381 reject_low 2 ALIGNMENT 203 Y12-12f21.p1k chr04 36 366 668093 668426 F 331 88.82 1381 reject_low 10 ALIGNMENT 0 Y12-12f21.p1k chr07 367 808 707533 707532 F 442 0.00 1381 reject_low 15 ALIGNMENT 963 Y12-12f21.p1k chr12 1238 22 167159 168392 C 1217 94.58 1381 accept 0 ALIGNMENT 0 Y12-12f21.p1k chr04 808 367 945955 945954 C 442 0.00 1381 reject_low 6 ALIGNMENT 0 Y12-12f21.p1k chr05 808 377 249925 249924 C 432 0.00 1381 reject_low 3 ALIGNMENT 195 Y12-12f21.p1k chr12 36 366 374002 374334 F 331 88.22 1381 reject_low 12 ALIGNMENT 0 Y12-12f21.p1k chr07 366 808 736321 736320 F 443 0.00 1381 reject_low 4 ALIGNMENT 0 Y12-12f21.p1k chr09 367 808 324727 324726 F 442 0.00 1381 reject_low 20 ALIGNMENT 194 Y12-12f21.p1k chr14 36 366 546741 547073 F 331 88.22 1381 reject_low 13 ALIGNMENT 0 Y12-12f21.p1k chr01 808 480 182508 182507 C 329 0.00 1381 reject_low 1 ALIGNMENT 191 Y12-12f21.p1k chr07 366 36 319431 319763 C 331 87.92 1381 reject_low 14 ALIGNMENT 0 Y12-12f21.p1k chr07 307 808 401894 401893 F 502 0.00 1381 reject_low 21 ALIGNMENT 0 Y12-12f21.p1k chr05 808 367 434633 434632 C 442 0.00 1381 reject_low 5 ALIGNMENT 0 Y12-12f21.p1k chr09 367 808 205551 205550 F 442 0.00 1381 reject_low 17 ALIGNMENT 0 Y12-12f21.p1k chr08 808 367 146330 146329 C 442 0.00 1381 reject_low 11 ALIGNMENT 90 Y12-12f21.p1k chr01 479 388 182507 182598 C 92 100.00 1381 reject_low 1 ALIGNMENT 0 Y12-12f21.p1k chr14 367 808 547073 547072 F 442 0.00 1381 reject_low 13 ALIGNMENT 0 Y12-12f21.p1k chr07 367 808 712544 712543 F 442 0.00 1381 reject_low 16 ALIGNMENT 306 Y12-12f22.p1k chr14 446 779 102190 102523 F 334 99.10 1334 reject_low 7 ALIGNMENT 0 Y12-12f22.p1k chr07 447 62 535547 535546 C 386 0.00 1334 reject_low 6 ALIGNMENT 0 Y12-12f22.p1k chr07 470 62 817388 817387 C 409 0.00 1334 reject_low 23 ALIGNMENT 0 Y12-12f22.p1k chr15 467 62 600715 600714 C 406 0.00 1334 reject_low 17 ALIGNMENT 0 Y12-12f22.p1k chr13 62 447 357004 357003 F 386 0.00 1334 reject_low 5 ALIGNMENT 0 Y12-12f22.p1k chr11 780 897 517426 517425 F 118 0.00 1334 reject_low 4 ALIGNMENT 310 Y12-12f22.p1k chr07 779 448 535215 535546 C 332 99.70 1334 reject_low 6 ALIGNMENT 0 Y12-12f22.p1k chr13 467 62 184482 184481 C 406 0.00 1334 reject_low 13 ALIGNMENT 212 Y12-12f22.p1k chr01 446 779 165825 166163 F 334 90.12 1334 reject_low 20 ALIGNMENT 304 Y12-12f22.p1k chr14 448 779 96610 96941 F 332 99.10 1334 reject_low 9 ALIGNMENT 0 Y12-12f22.p1k chr13 780 897 357335 357334 F 118 0.00 1334 reject_low 5 ALIGNMENT 315 Y12-12f22.p1k chr13 446 779 362584 362917 F 334 100.00 1334 reject_low 2 ALIGNMENT 0 Y12-12f22.p1k chr07 62 467 817418 817417 F 406 0.00 1334 reject_low 14 ALIGNMENT 0 Y12-12f22.p1k chr02 447 62 226956 226955 C 386 0.00 1334 reject_low 3 ALIGNMENT 0 Y12-12f22.p1k chr07 897 787 931685 931684 C 111 0.00 1334 reject_low 1 ALIGNMENT 0 Y12-12f22.p1k chr13 780 897 362917 362916 F 118 0.00 1334 reject_low 2 ALIGNMENT 0 Y12-12f22.p1k chr10 897 785 472372 472371 C 113 0.00 1334 reject_low 11 ALIGNMENT 0 Y12-12f22.p1k chr01 62 445 165825 165824 F 384 0.00 1334 reject_low 20 ALIGNMENT 0 Y12-12f22.p1k chr02 897 780 221041 221040 C 118 0.00 1334 reject_low 8 ALIGNMENT 306 Y12-12f22.p1k chr07 786 443 931684 932027 C 344 98.26 1334 reject_low 1 ALIGNMENT 0 Y12-12f22.p1k chr03 782 897 124464 124463 F 116 0.00 1334 reject_low 12 ALIGNMENT 288 Y12-12f22.p1k chr13 781 468 184168 184481 C 314 99.36 1334 reject_low 13 ALIGNMENT 815 Y12-12f22.q1k chr02 974 34 200160 201106 C 941 96.49 976 reject_bad_break 0 ALIGNMENT 0 Y12-12f22.p1k chr14 62 445 102190 102189 F 384 0.00 1334 reject_low 7 ALIGNMENT 0 Y12-12f22.p1k chr02 897 780 259577 259576 C 118 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-12f22.p1k chr01 780 897 166163 166162 F 118 0.00 1334 reject_low 20 ALIGNMENT 389 Y12-12f22.p1k chr02 18 447 196960 197391 F 430 99.30 1334 reject_bad_break 0 ALIGNMENT 0 Y12-12f22.p1k chr07 780 897 823311 823310 F 118 0.00 1334 reject_low 15 ALIGNMENT 0 Y12-12f22.p1k chr07 780 897 817729 817728 F 118 0.00 1334 reject_low 14 ALIGNMENT 0 Y12-12f22.p1k chr15 897 662 594631 594630 C 236 0.00 1334 reject_low 22 ALIGNMENT 57 Y12-12f22.p1k chr07 582 471 817278 817387 C 112 86.61 1334 reject_low 23 ALIGNMENT 313 Y12-12f22.p1k chr02 779 448 226624 226955 C 332 100.00 1334 reject_low 3 ALIGNMENT 0 Y12-12f22.p1k chr07 62 467 823000 822999 F 406 0.00 1334 reject_low 15 ALIGNMENT 195 Y12-12f22.p1k chr02 780 979 197387 197586 F 200 99.50 1334 reject_bad_break 0 ALIGNMENT 0 Y12-12f22.p1k chr02 448 779 197392 197386 F 332 0.00 1334 reject_bad_break 0 ALIGNMENT 0 Y12-12f22.p1k chr08 62 467 543630 543629 F 406 0.00 1334 reject_low 19 ALIGNMENT 0 Y12-12f22.p1k chr01 780 897 160575 160574 F 118 0.00 1334 reject_low 21 ALIGNMENT 0 Y12-12f22.p1k chr13 897 782 184169 184168 C 116 0.00 1334 reject_low 13 ALIGNMENT 0 Y12-12f22.p1k chr11 62 447 517095 517094 F 386 0.00 1334 reject_low 4 ALIGNMENT 0 Y12-12f22.p1k chr11 782 897 458116 458115 F 116 0.00 1334 reject_low 10 ALIGNMENT 288 Y12-12f22.p1k chr07 468 779 817418 817729 F 312 99.68 1334 reject_low 14 ALIGNMENT 29 Y12-12f22.p1k chr14 779 750 102549 102578 C 30 100.00 1334 reject_low 24 ALIGNMENT 0 Y12-12f22.p1k chr15 467 62 595133 595132 C 406 0.00 1334 reject_low 16 ALIGNMENT 302 Y12-12f22.p1k chr02 779 446 221040 221375 C 334 98.80 1334 reject_low 8 ALIGNMENT 0 Y12-12f22.p1k chr03 62 447 124131 124130 F 386 0.00 1334 reject_low 12 ALIGNMENT 0 Y12-12f22.p1k chr10 445 62 472717 472716 C 384 0.00 1334 reject_low 11 ALIGNMENT 0 Y12-12f22.p1k chr14 780 897 102523 102522 F 118 0.00 1334 reject_low 7 ALIGNMENT 0 Y12-12f22.p1k chr14 780 897 96941 96940 F 118 0.00 1334 reject_low 9 ALIGNMENT 288 Y12-12f22.p1k chr15 779 468 600403 600714 C 312 99.68 1334 reject_low 17 ALIGNMENT 288 Y12-12f22.p1k chr15 779 468 594821 595132 C 312 99.68 1334 reject_low 16 ALIGNMENT 294 Y12-12f22.p1k chr11 448 781 457783 458116 F 334 97.90 1334 reject_low 10 ALIGNMENT 288 Y12-12f22.p1k chr07 468 779 823000 823311 F 312 99.68 1334 reject_low 15 ALIGNMENT 0 Y12-12f22.p1k chr07 897 780 535216 535215 C 118 0.00 1334 reject_low 6 ALIGNMENT 0 Y12-12f22.p1k chr02 897 780 226625 226624 C 118 0.00 1334 reject_low 3 ALIGNMENT 0 Y12-12f22.p1k chr01 62 447 160239 160238 F 386 0.00 1334 reject_low 21 ALIGNMENT 0 Y12-12f22.p1k chr15 531 62 594760 594759 C 470 0.00 1334 reject_low 22 ALIGNMENT 288 Y12-12f22.p1k chr03 448 781 124131 124464 F 334 97.31 1334 reject_low 12 ALIGNMENT 210 Y12-12f22.p1k chr01 448 779 160239 160575 F 332 90.06 1334 reject_low 21 ALIGNMENT 313 Y12-12f22.p1k chr13 448 779 357004 357335 F 332 100.00 1334 reject_low 5 ALIGNMENT 278 Y12-12f22.p1k chr10 784 446 472371 472716 C 339 96.17 1334 reject_low 11 ALIGNMENT 0 Y12-12f22.p1k chr13 62 445 362584 362583 F 384 0.00 1334 reject_low 2 ALIGNMENT 0 Y12-12f22.p1k chr02 445 62 221376 221375 C 384 0.00 1334 reject_low 8 ALIGNMENT 285 Y12-12f22.p1k chr02 779 468 259576 259887 C 312 99.36 1334 reject_low 18 ALIGNMENT 0 Y12-12f22.p1k chr15 897 780 600404 600403 C 118 0.00 1334 reject_low 17 ALIGNMENT 313 Y12-12f22.p1k chr11 448 779 517095 517426 F 332 100.00 1334 reject_low 4 ALIGNMENT 0 Y12-12f22.p1k chr07 897 583 817279 817278 C 315 0.00 1334 reject_low 23 ALIGNMENT 81 Y12-12f22.p1k chr15 661 532 594630 594759 C 130 90.00 1334 reject_low 22 ALIGNMENT 285 Y12-12f22.p1k chr08 468 779 543630 543941 F 312 99.36 1334 reject_low 19 ALIGNMENT 0 Y12-12f22.p1k chr11 62 447 457783 457782 F 386 0.00 1334 reject_low 10 ALIGNMENT 0 Y12-12f22.p1k chr08 780 897 543941 543940 F 118 0.00 1334 reject_low 19 ALIGNMENT 0 Y12-12f22.p1k chr14 749 62 102579 102578 C 688 0.00 1334 reject_low 24 ALIGNMENT 0 Y12-12f22.p1k chr14 62 447 96610 96609 F 386 0.00 1334 reject_low 9 ALIGNMENT 0 Y12-12f22.p1k chr15 897 780 594822 594821 C 118 0.00 1334 reject_low 16 ALIGNMENT 0 Y12-12f22.p1k chr14 897 780 102550 102549 C 118 0.00 1334 reject_low 24 ALIGNMENT 0 Y12-12f22.p1k chr02 467 62 259888 259887 C 406 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-12f22.p1k chr07 442 62 932028 932027 C 381 0.00 1334 reject_low 1 ALIGNMENT 890 Y12-12g01.p1k chr08 22 1081 401537 402609 F 1060 96.32 1315 accept 0 ALIGNMENT 959 Y12-12g01.q1k chr08 1211 30 405324 406512 C 1182 96.45 1329 accept 0 ALIGNMENT 327 Y12-12g02.q1k chr12 616 13 454401 454996 C 604 85.93 1252 accept 0 ALIGNMENT 271 Y12-12g02.q1k chr12 784 196 463371 463951 C 589 83.36 1252 reject_low 1 ALIGNMENT 917 Y12-12g03.q1k chr04 35 1096 1377609 1378684 F 1062 97.08 1262 accept 0 ALIGNMENT 893 Y12-12g03.p1k chr04 1133 36 1381566 1382676 C 1098 95.45 1367 accept 0 ALIGNMENT 913 Y12-12g04.q1k chr05 1057 34 393888 394925 C 1024 97.56 1277 accept 0 ALIGNMENT 1077 Y12-12g04.p1k chr05 25 1295 390175 391451 F 1271 95.44 1405 accept 0 ALIGNMENT 210 Y12-12g07.p1k chr13 245 21 503770 503995 C 225 99.11 1433 reject_low 5 ALIGNMENT 198 Y12-12g07.p1k chr15 245 21 703773 703998 C 225 97.33 1433 reject_low 16 ALIGNMENT 210 Y12-12g07.p1k chr10 245 21 197464 197689 C 225 99.11 1433 reject_low 3 ALIGNMENT 0 Y12-12g07.p1k chr07 735 246 110860 110859 C 490 0.00 1433 reject_low 15 ALIGNMENT 0 Y12-12g07.p1k chr15 735 246 703774 703773 C 490 0.00 1433 reject_low 16 ALIGNMENT 201 Y12-12g07.p1k chr13 21 245 808680 808905 F 225 97.78 1433 reject_low 13 ALIGNMENT 0 Y12-12g07.p1k chr05 246 735 354726 354725 F 490 0.00 1433 reject_low 11 ALIGNMENT 0 Y12-12g07.p1k chr13 246 735 808905 808904 F 490 0.00 1433 reject_low 13 ALIGNMENT 716 Y12-12g07.p1k chr07 246 1143 287855 288750 F 898 94.77 1433 accept 0 ALIGNMENT 204 Y12-12g07.p1k chr05 21 245 354501 354726 F 225 98.22 1433 reject_low 11 ALIGNMENT 204 Y12-12g07.p1k chr08 245 21 85535 85760 C 225 98.22 1433 reject_low 12 ALIGNMENT 0 Y12-12g07.p1k chr04 735 246 437147 437146 C 490 0.00 1433 reject_low 17 ALIGNMENT 210 Y12-12g07.p1k chr10 245 21 203319 203544 C 225 99.11 1433 reject_low 4 ALIGNMENT 184 Y12-12g07.p1k chr07 21 246 931318 931544 F 226 95.13 1433 reject_low 18 ALIGNMENT 210 Y12-12g07.p1k chr09 21 245 196795 197020 F 225 99.11 1433 reject_low 2 ALIGNMENT 0 Y12-12g07.p1k chr14 735 246 96452 96451 C 490 0.00 1433 reject_low 19 ALIGNMENT 0 Y12-12g07.p1k chr10 735 246 197465 197464 C 490 0.00 1433 reject_low 3 ALIGNMENT 0 Y12-12g07.p1k chr13 735 246 503771 503770 C 490 0.00 1433 reject_low 5 ALIGNMENT 207 Y12-12g07.p1k chr16 21 245 437032 437257 F 225 98.67 1433 reject_low 9 ALIGNMENT 0 Y12-12g07.p1k chr07 62 245 287855 287854 F 184 0.00 1433 accept 0 ALIGNMENT 0 Y12-12g07.p1k chr08 735 246 85536 85535 C 490 0.00 1433 reject_low 12 ALIGNMENT 0 Y12-12g07.p1k chr07 247 735 931544 931543 F 489 0.00 1433 reject_low 18 ALIGNMENT 0 Y12-12g07.p1k chr16 247 735 443110 443109 F 489 0.00 1433 reject_low 7 ALIGNMENT 979 Y12-12g07.q1k chr07 1112 36 290514 291600 C 1077 97.86 1359 accept 0 ALIGNMENT 0 Y12-12g07.p1k chr14 247 735 632492 632491 F 489 0.00 1433 reject_low 6 ALIGNMENT 0 Y12-12g07.p1k chr16 246 735 437257 437256 F 490 0.00 1433 reject_low 9 ALIGNMENT 0 Y12-12g07.p1k chr02 246 735 643853 643852 F 490 0.00 1433 reject_low 10 ALIGNMENT 207 Y12-12g07.p1k chr08 245 21 91387 91612 C 225 98.67 1433 reject_low 8 ALIGNMENT 0 Y12-12g07.p1k chr14 87 62 96610 96609 C 26 0.00 1433 reject_low 19 ALIGNMENT 210 Y12-12g07.p1k chr02 21 245 35993 36218 F 225 99.11 1433 reject_low 1 ALIGNMENT 204 Y12-12g07.p1k chr02 21 245 643628 643853 F 225 98.22 1433 reject_low 10 ALIGNMENT 189 Y12-12g07.p1k chr04 245 21 437146 437371 C 225 96.00 1433 reject_low 17 ALIGNMENT 198 Y12-12g07.p1k chr07 245 21 110859 111084 C 225 97.33 1433 reject_low 15 ALIGNMENT 140 Y12-12g07.p1k chr14 245 88 96451 96609 C 158 97.47 1433 reject_low 19 ALIGNMENT 0 Y12-12g07.p1k chr14 735 246 561609 561608 C 490 0.00 1433 reject_low 14 ALIGNMENT 0 Y12-12g07.p1k chr02 246 735 36218 36217 F 490 0.00 1433 reject_low 1 ALIGNMENT 0 Y12-12g07.p1k chr09 246 735 197020 197019 F 490 0.00 1433 reject_low 2 ALIGNMENT 201 Y12-12g07.p1k chr14 245 21 561608 561833 C 225 97.78 1433 reject_low 14 ALIGNMENT 0 Y12-12g07.p1k chr10 735 246 203320 203319 C 490 0.00 1433 reject_low 4 ALIGNMENT 208 Y12-12g07.p1k chr16 21 246 442884 443110 F 226 98.67 1433 reject_low 7 ALIGNMENT 208 Y12-12g07.p1k chr14 21 246 632266 632492 F 226 98.67 1433 reject_low 6 ALIGNMENT 0 Y12-12g07.p1k chr08 735 246 91388 91387 C 490 0.00 1433 reject_low 8 ALIGNMENT 949 Y12-12g08.q1k chr09 35 1102 159369 160449 F 1068 96.35 1378 accept 0 ALIGNMENT 954 Y12-12g08.p1k chr09 1114 20 164183 165288 C 1095 97.17 1372 accept 0 ALIGNMENT 951 Y12-12g09.p1k chr07 1183 31 194847 196003 C 1153 95.23 1416 accept 0 ALIGNMENT 934 Y12-12g09.q1k chr07 36 1235 191383 192570 F 1200 94.17 1249 accept 0 ALIGNMENT 985 Y12-12g11.q1k chr15 38 1236 616176 617381 F 1199 95.66 1328 accept 0 ALIGNMENT 899 Y12-12g11.p1k chr15 1067 20 619022 620083 C 1048 95.99 1364 accept 0 ALIGNMENT 1046 Y12-12g12.p1k chr15 24 1244 964858 966083 F 1221 96.40 1424 accept 0 ALIGNMENT 932 Y12-12g12.q1k chr15 1199 36 967738 968902 C 1164 94.16 1357 accept 0 ALIGNMENT 970 Y12-12g16.q1k chr09 34 1256 259478 260703 F 1223 94.44 1341 accept 0 ALIGNMENT 1005 Y12-12g16.p1k chr09 1177 38 263208 264355 C 1140 97.19 1435 accept 0 ALIGNMENT 1019 Y12-12g17.p1k chr15 20 1186 940394 941570 F 1167 96.66 1390 accept_chi 0 ALIGNMENT 1014 Y12-12g17.q1k chr13 28 1182 655296 656460 F 1155 96.28 1328 accept_chi 1 ALIGNMENT 991 Y12-12g18.p1k chr04 1198 20 438938 440130 C 1179 96.35 1423 accept 0 ALIGNMENT 852 Y12-12g18.q1k chr04 34 1138 435427 436535 F 1105 94.48 1339 accept 0 ALIGNMENT 916 Y12-12g19.q1k chr13 35 1236 4369 5568 F 1202 92.93 1377 ambiguous_tel 4 ALIGNMENT 0 Y12-12g19.q1k chr08 768 904 4952 4971 F 137 0.00 1377 ambiguous_tel 19 ALIGNMENT 846 Y12-12g19.q1k chr02 35 1204 4694 5845 F 1170 91.97 1377 ambiguous_tel 16 ALIGNMENT 1027 Y12-12g19.q1k chr09 35 1154 5832 6948 F 1120 97.41 1377 ambiguous_tel 2 ALIGNMENT 811 Y12-12g19.q1k chr16 915 35 942804 943683 C 881 97.96 1377 ambiguous_tel 17 ALIGNMENT 941 Y12-12g19.q1k chr05 1204 37 570325 571463 C 1168 94.52 1377 ambiguous_tel 8 ALIGNMENT 700 Y12-12g19.q1k chr05 37 1029 5400 6338 F 993 92.35 1377 ambiguous_tel 18 ALIGNMENT 622 Y12-12g19.q1k chr08 35 767 4225 4951 F 733 96.18 1377 ambiguous_tel 19 ALIGNMENT 917 Y12-12g19.q1k chr12 1204 35 1071652 1072820 C 1170 93.50 1377 ambiguous_tel 10 ALIGNMENT 1027 Y12-12g19.q1k chr10 35 1154 5815 6931 F 1120 97.41 1377 ambiguous_tel 3 ALIGNMENT 912 Y12-12g19.q1k chr12 35 1204 4493 5660 F 1170 93.42 1377 ambiguous_tel 12 ALIGNMENT 928 Y12-12g19.p1k chr12 21 1150 711355 712484 F 1130 95.58 1393 accept 0 ALIGNMENT 917 Y12-12g19.q1k chr04 1204 35 1525451 1526619 C 1170 93.50 1377 ambiguous_tel 9 ALIGNMENT 886 Y12-12g19.q1k chr06 35 1204 3531 4683 F 1170 92.91 1377 ambiguous_tel 15 ALIGNMENT 917 Y12-12g19.q1k chr15 1204 35 1084616 1085784 C 1170 93.50 1377 ambiguous_tel 11 ALIGNMENT 22 Y12-12g19.q1k chr08 905 929 4972 4996 F 25 96.00 1377 ambiguous_tel 19 ALIGNMENT 834 Y12-12g19.q1k chr12 1246 35 1065112 1066268 C 1212 91.34 1377 ambiguous_tel 7 ALIGNMENT 971 Y12-12g19.q1k chr07 1204 35 1084352 1085525 C 1170 94.70 1377 ambiguous_tel 5 ALIGNMENT 973 Y12-12g19.q1k chr14 35 1236 5443 6646 F 1202 94.18 1377 ambiguous_tel 1 ALIGNMENT 971 Y12-12g19.q1k chr16 35 1204 5352 6525 F 1170 94.70 1377 ambiguous_tel 6 ALIGNMENT 843 Y12-12g19.q1k chr08 1236 35 556953 558137 C 1202 91.26 1377 ambiguous_tel 14 ALIGNMENT 912 Y12-12g19.q1k chr12 35 1204 10028 11195 F 1170 93.42 1377 ambiguous_tel 13 ALIGNMENT 946 Y12-12g20.p1k chr12 20 1150 563218 564370 F 1131 96.46 1345 accept 0 ALIGNMENT 646 Y12-12g20.q1k chr12 836 34 568142 568956 C 803 94.89 1141 accept 0 ALIGNMENT 969 Y12-12g22.p1k chr11 21 1134 456524 457642 F 1114 96.59 1374 accept 0 ALIGNMENT 0 Y12-12g23.p1k chr04 758 62 1161103 1161102 C 697 0.00 1332 reject_low 2 ALIGNMENT 948 Y12-12g23.q1k chr13 1162 31 292394 293530 C 1132 95.85 1227 accept 0 ALIGNMENT 55 Y12-12g23.p1k chr04 1040 759 1160823 1161102 C 282 75.53 1332 reject_low 2 ALIGNMENT 0 Y12-12g23.p1k chr08 752 62 288593 288592 C 691 0.00 1332 reject_low 1 ALIGNMENT 1018 Y12-12g23.p1k chr13 22 1214 287525 288712 F 1193 95.89 1332 accept 0 ALIGNMENT 74 Y12-12g23.p1k chr08 1081 753 288266 288592 C 329 75.99 1332 reject_low 1 ALIGNMENT 907 Y12-12g24.q1k chr14 1134 28 279185 280283 C 1107 95.75 1260 accept 0 ALIGNMENT 1044 Y12-12g24.p1k chr14 19 1236 276081 277316 F 1218 96.31 1322 accept 0 ALIGNMENT 1003 Y12-12h01.q1k chr13 1252 29 856711 857941 C 1224 95.92 1350 accept 0 ALIGNMENT 1011 Y12-12h01.p1k chr13 22 1244 852897 854129 F 1223 95.42 1336 accept 0 ALIGNMENT 1022 Y12-12h02.q1k chr02 1338 35 283595 284892 C 1304 94.86 1369 accept 0 ALIGNMENT 1066 Y12-12h02.p1k chr02 23 1310 281001 282287 F 1288 95.19 1352 accept 0 ALIGNMENT 0 Y12-12h03.p1k chr07 147 896 728906 728905 F 750 0.00 1377 reject_low 1 ALIGNMENT 1017 Y12-12h03.q1k chr10 35 1261 400255 401490 F 1227 95.35 1321 accept 0 ALIGNMENT 1021 Y12-12h03.p1k chr10 1162 22 402958 404111 C 1141 97.46 1377 accept 0 ALIGNMENT 0 Y12-12h03.p1k chr07 62 118 728879 728878 F 57 0.00 1377 reject_low 1 ALIGNMENT 20 Y12-12h03.p1k chr07 119 146 728879 728906 F 28 92.86 1377 reject_low 1 ALIGNMENT 1047 Y12-12h04.p1k chr12 1283 22 906135 907410 C 1262 95.48 1405 accept 0 ALIGNMENT 0 Y12-12h04.q1k chr12 62 915 904051 904050 F 854 0.00 1287 reject_low 1 ALIGNMENT 34 Y12-12h04.q1k chr12 916 987 904051 904123 F 72 84.72 1287 reject_low 1 ALIGNMENT 987 Y12-12h04.q1k chr12 30 1144 903197 904325 F 1115 96.68 1287 accept 0 ALIGNMENT 882 Y12-12h05.q1k chr07 32 1074 936984 938041 F 1043 95.97 1370 accept 0 ALIGNMENT 988 Y12-12h05.p1k chr07 1144 20 940110 941252 C 1125 97.24 1363 accept 0 ALIGNMENT 700 Y12-12h06.q1k chr12 970 1 454994 455971 C 970 91.65 1353 accept_chi 1 ALIGNMENT 765 Y12-12h06.p1k chr04 18 1093 310188 311261 F 1076 91.45 1430 accept_chi 0 ALIGNMENT 700 Y12-12h06.q1k chr12 970 1 464131 465108 C 970 91.65 1353 accept_chi 2 ALIGNMENT 972 Y12-12h07.q1k chr03 35 1145 58137 59258 F 1111 96.49 1402 accept 0 ALIGNMENT 0 Y12-12h07.p1k chr03 951 929 62750 62749 C 23 0.00 1417 accept 0 ALIGNMENT 865 Y12-12h07.p1k chr03 928 18 62749 63663 C 911 98.57 1417 accept 0 ALIGNMENT 883 Y12-12h08.q1k chr04 35 1143 329597 330701 F 1109 94.86 1395 accept 0 ALIGNMENT 932 Y12-12h08.p1k chr04 1161 24 332761 333902 C 1138 95.25 1405 accept 0 ALIGNMENT 1026 Y12-12h09.p1k chr14 1184 22 701945 703110 C 1163 96.39 1419 accept 0 ALIGNMENT 1037 Y12-12h09.q1k chr14 38 1246 698314 699519 F 1209 96.11 1297 accept 0 ALIGNMENT 1021 Y12-12h11.p1k chr07 19 1186 194778 195958 F 1168 96.75 1389 accept 0 ALIGNMENT 1035 Y12-12h11.q1k chr07 1148 36 198322 199436 C 1113 98.47 1356 accept 0 ALIGNMENT 992 Y12-12h12.q1k chr14 38 1199 21654 22826 F 1162 95.96 1325 accept 0 ALIGNMENT 969 Y12-12h12.p1k chr14 1117 21 24642 25745 C 1097 97.36 1389 accept 0 ALIGNMENT 1003 Y12-12h13.q1k chr11 32 1222 352866 354068 F 1191 95.80 1256 accept 0 ALIGNMENT 910 Y12-12h13.p1k chr11 1093 25 357702 358783 C 1069 96.63 1439 accept 0 ALIGNMENT 975 Y12-12h14.q1k chr14 1198 31 495328 496509 C 1168 96.15 1234 accept 0 ALIGNMENT 938 Y12-12h14.p1k chr14 22 1152 492491 493634 F 1131 96.20 1437 accept 0 ALIGNMENT 1032 Y12-12h15.q1k chr15 35 1219 1016083 1017279 F 1185 96.37 1334 accept 0 ALIGNMENT 957 Y12-12h15.p1k chr15 1118 34 1019223 1020315 C 1085 97.14 1402 accept 0 ALIGNMENT 0 Y12-12h16.p1k chr09 62 257 400452 400451 F 196 0.00 1387 reject_low 9 ALIGNMENT 0 Y12-12h16.p1k chr12 62 248 511524 511523 F 187 0.00 1387 reject_low 5 ALIGNMENT 0 Y12-12h16.p1k chr08 850 292 66566 66565 C 559 0.00 1387 reject_low 7 ALIGNMENT 0 Y12-12h16.p1k chr04 290 850 747553 747552 F 561 0.00 1387 reject_low 3 ALIGNMENT 20 Y12-12h16.p1k chr08 287 242 372873 372919 C 46 86.96 1387 reject_low 2 ALIGNMENT 20 Y12-12h16.p1k chr09 258 291 400452 400485 F 34 94.12 1387 reject_low 9 ALIGNMENT 20 Y12-12h16.p1k chr16 252 281 908162 908191 F 30 96.67 1387 reject_low 10 ALIGNMENT 0 Y12-12h16.p1k chr08 255 62 66601 66600 C 194 0.00 1387 reject_low 7 ALIGNMENT 0 Y12-12h16.p1k chr04 248 62 1346569 1346568 C 187 0.00 1387 reject_low 6 ALIGNMENT 21 Y12-12h16.p1k chr04 291 249 1346526 1346568 C 43 90.70 1387 reject_low 6 ALIGNMENT 0 Y12-12h16.p1k chr04 62 248 747513 747512 F 187 0.00 1387 reject_low 3 ALIGNMENT 0 Y12-12h16.p1k chr16 62 251 908162 908161 F 190 0.00 1387 reject_low 10 ALIGNMENT 25 Y12-12h16.p1k chr04 249 289 747513 747553 F 41 95.12 1387 reject_low 3 ALIGNMENT 0 Y12-12h16.p1k chr16 282 850 908191 908190 F 569 0.00 1387 reject_low 10 ALIGNMENT 0 Y12-12h16.p1k chr02 294 850 455787 455786 F 557 0.00 1387 reject_low 1 ALIGNMENT 22 Y12-12h16.p1k chr08 291 256 66565 66600 C 36 94.44 1387 reject_low 7 ALIGNMENT 0 Y12-12h16.p1k chr08 241 62 372920 372919 C 180 0.00 1387 reject_low 2 ALIGNMENT 965 Y12-12h16.p1k chr08 1126 22 168313 169441 C 1105 97.10 1387 accept 0 ALIGNMENT 0 Y12-12h16.p1k chr09 292 850 400485 400484 F 559 0.00 1387 reject_low 9 ALIGNMENT 21 Y12-12h16.p1k chr07 291 261 448891 448921 C 31 96.77 1387 reject_low 8 ALIGNMENT 24 Y12-12h16.p1k chr02 248 286 780391 780429 F 39 94.87 1387 reject_low 4 ALIGNMENT 0 Y12-12h16.p1k chr02 62 247 780391 780390 F 186 0.00 1387 reject_low 4 ALIGNMENT 0 Y12-12h16.p1k chr08 850 288 372874 372873 C 563 0.00 1387 reject_low 2 ALIGNMENT 0 Y12-12h16.p1k chr04 850 292 1346527 1346526 C 559 0.00 1387 reject_low 6 ALIGNMENT 0 Y12-12h16.p1k chr07 260 62 448922 448921 C 199 0.00 1387 reject_low 8 ALIGNMENT 0 Y12-12h16.p1k chr12 287 850 511561 511560 F 564 0.00 1387 reject_low 5 ALIGNMENT 0 Y12-12h16.p1k chr07 850 292 448892 448891 C 559 0.00 1387 reject_low 8 ALIGNMENT 28 Y12-12h16.p1k chr02 257 293 455751 455787 F 37 97.30 1387 reject_low 1 ALIGNMENT 23 Y12-12h16.p1k chr12 249 286 511524 511561 F 38 94.74 1387 reject_low 5 ALIGNMENT 883 Y12-12h16.q1k chr08 36 1099 164827 165901 F 1064 95.58 1284 accept 0 ALIGNMENT 0 Y12-12h16.p1k chr02 287 850 780429 780428 F 564 0.00 1387 reject_low 4 ALIGNMENT 0 Y12-12h16.p1k chr02 62 256 455751 455750 F 195 0.00 1387 reject_low 1 ALIGNMENT 818 Y12-12h17.p1k chr08 46 1128 419778 420882 F 1083 93.54 1355 accept 0 ALIGNMENT 926 Y12-12h18.p1k chr10 1108 25 141825 142927 C 1084 96.40 1388 accept_chi 0 ALIGNMENT 871 Y12-12h18.q1k chr04 1053 31 1341417 1342446 C 1023 95.70 1328 accept_chi 1 ALIGNMENT 0 Y12-12h19.q1k chr14 442 62 144145 144144 C 381 0.00 1367 reject_low 2 ALIGNMENT 917 Y12-12h19.p1k chr10 1063 19 619196 620259 C 1045 97.70 1340 accept_chi 1 ALIGNMENT 957 Y12-12h19.q1k chr12 34 1271 607189 608430 F 1238 93.38 1367 accept_chi 0 ALIGNMENT 0 Y12-12h19.q1k chr14 889 505 144084 144083 C 385 0.00 1367 reject_low 2 ALIGNMENT 57 Y12-12h19.q1k chr14 504 443 144083 144144 C 62 100.00 1367 reject_low 2 ALIGNMENT 991 Y12-12h20.p1k chr12 20 1156 117933 119082 F 1137 97.19 1369 accept 0 ALIGNMENT 523 Y12-12h20.q1k chr12 750 36 122590 123318 C 715 93.01 910 accept 0 ALIGNMENT 964 Y12-12h21.p1k chr12 22 1147 578154 579291 F 1126 97.34 1325 accept 0 ALIGNMENT 924 Y12-12h21.q1k chr12 1105 35 581485 582556 C 1071 96.55 1209 accept 0 ALIGNMENT 947 Y12-12h23.p1k chr12 28 1126 451582 452681 F 1099 96.36 1350 accept 0 ALIGNMENT 707 Y12-12h23.p1k chr12 233 1027 489754 490543 F 795 96.98 1350 reject_low 2 ALIGNMENT 947 Y12-12h23.p1k chr12 28 1126 460719 461818 F 1099 96.36 1350 accept 1 ALIGNMENT 0 Y12-12h23.p1k chr12 62 232 489754 489753 F 171 0.00 1350 reject_low 2 ALIGNMENT 826 Y12-12h24.q1k chr12 30 1091 460236 461311 F 1062 94.16 1239 accept 0 ALIGNMENT 291 Y12-12h24.q1k chr12 694 1091 489754 490142 F 398 92.96 1239 reject_low 2 ALIGNMENT 0 Y12-12h24.q1k chr12 62 693 489754 489753 F 632 0.00 1239 reject_low 2 ALIGNMENT 580 Y12-12h24.q1k chr12 346 1091 451419 452174 F 746 94.10 1239 reject_low 1 ALIGNMENT 1061 Y12-12h24.p1k chr12 1260 22 464547 465804 C 1239 95.96 1319 accept 0 ALIGNMENT 1061 Y12-12h24.p1k chr12 1260 22 455410 456667 C 1239 95.96 1319 reject_low 1 ALIGNMENT 0 Y12-12h24.q1k chr12 62 345 451419 451418 F 284 0.00 1239 reject_low 1 ALIGNMENT 785 Y12-12i01.q1k chr10 36 995 308687 309633 F 960 96.25 1364 accept 0 ALIGNMENT 221 Y12-12i01.p1k chr10 350 24 312880 313204 C 327 90.21 1895 accept 0 ALIGNMENT 1079 Y12-12i02.q1k chr15 31 1278 146494 147734 F 1248 97.60 1325 accept 0 ALIGNMENT 983 Y12-12i02.p1k chr15 1228 18 149939 151162 C 1211 95.79 1450 accept 0 ALIGNMENT 279 Y12-12i03.p1k chr13 16 392 688563 688943 F 377 92.31 1367 accept 0 ALIGNMENT 916 Y12-12i04.q1k chr12 1073 30 454004 455059 C 1044 96.93 1276 accept 0 ALIGNMENT 1034 Y12-12i04.p1k chr12 25 1228 452563 453771 F 1204 95.68 1416 accept 0 ALIGNMENT 916 Y12-12i04.q1k chr12 1073 30 463141 464196 C 1044 96.93 1276 accept 1 ALIGNMENT 1034 Y12-12i04.p1k chr12 25 1228 461700 462908 F 1204 95.68 1416 accept 1 ALIGNMENT 833 Y12-12i05.p1k chr12 1104 19 150544 151638 C 1086 94.66 1410 accept 0 ALIGNMENT 970 Y12-12i05.q1k chr12 39 1165 146358 147499 F 1127 96.18 1288 accept 0 ALIGNMENT 989 Y12-12i06.p1k chr05 31 1131 341815 342927 F 1101 97.73 1417 accept 0 ALIGNMENT 1009 Y12-12i06.q1k chr05 1202 35 345289 346464 C 1168 96.23 1329 accept 0 ALIGNMENT 963 Y12-12i08.p1k chr05 1112 23 237323 238423 C 1090 97.52 1405 accept 0 ALIGNMENT 924 Y12-12i08.q1k chr05 25 1167 232253 233422 F 1143 94.75 1345 accept 0 ALIGNMENT 925 Y12-12i09.p1k chr03 20 1090 107257 108331 F 1071 96.17 1384 accept 0 ALIGNMENT 1011 Y12-12i09.q1k chr03 1260 39 111313 112546 C 1222 95.50 1314 accept 0 ALIGNMENT 918 Y12-12i10.q1k chr15 35 1065 858452 859497 F 1031 97.58 1263 accept 0 ALIGNMENT 951 Y12-12i10.p1k chr15 1129 26 863492 864614 C 1104 96.83 1410 accept 0 ALIGNMENT 337 Y12-12i12.p1k chr16 567 190 795389 795766 C 378 96.83 1532 reject_low 1 ALIGNMENT 0 Y12-12i12.p1k chr16 833 568 795390 795389 C 266 0.00 1532 reject_low 1 ALIGNMENT 0 Y12-12i12.p1k chr16 189 62 795767 795766 C 128 0.00 1532 reject_low 1 ALIGNMENT 1008 Y12-12i12.p1k chr07 1230 22 726683 727907 C 1209 95.45 1532 accept 0 ALIGNMENT 855 Y12-12i12.q1k chr07 36 988 721552 722518 F 953 98.01 1308 accept 0 ALIGNMENT 1030 Y12-12i14.q1k chr04 1221 37 447712 448910 C 1185 96.62 1364 accept 0 ALIGNMENT 1010 Y12-12i14.p1k chr04 23 1175 444472 445637 F 1153 97.22 1375 accept 0 ALIGNMENT 882 Y12-12i16.p1k chr12 1051 32 670632 671666 C 1020 97.35 1349 accept 0 ALIGNMENT 315 Y12-12i16.q1k chr12 151 625 666574 667039 F 475 91.37 1272 accept 0 ALIGNMENT 1024 Y12-12i17.q1k chr07 1247 37 1042088 1043300 C 1211 95.79 1331 accept 0 ALIGNMENT 875 Y12-12i17.p1k chr07 19 1022 1038614 1039612 F 1004 97.41 1380 accept 0 ALIGNMENT 903 Y12-12i18.q1k chr01 1139 34 89833 90939 C 1106 94.85 1333 accept 0 ALIGNMENT 64 Y12-12i18.q1k chr15 660 844 927686 927870 F 185 78.92 1333 reject_low 1 ALIGNMENT 991 Y12-12i18.p1k chr01 24 1184 85682 86860 F 1161 96.47 1401 accept 0 ALIGNMENT 135 Y12-12i18.q1k chr15 34 454 927045 927465 F 421 78.62 1333 reject_low 1 ALIGNMENT 0 Y12-12i18.q1k chr15 455 659 927466 927685 F 205 0.00 1333 reject_low 1 ALIGNMENT 1049 Y12-12i19.q1k chr07 1268 37 27744 28984 C 1232 95.78 1383 reject_bad_break 0 ALIGNMENT 20 Y12-12i19.p1k chr15 47 84 768668 768705 F 38 89.47 1316 reject_low 3 ALIGNMENT 0 Y12-12i19.p1k chr09 72 812 376635 376634 F 741 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-12i19.p1k chr15 85 812 768705 768704 F 728 0.00 1316 reject_low 3 ALIGNMENT 0 Y12-12i19.p1k chr06 346 62 255044 255043 C 285 0.00 1316 reject_low 1 ALIGNMENT 38 Y12-12i19.p1k chr07 19 61 23614 23657 F 43 97.67 1316 reject_bad_break 0 ALIGNMENT 0 Y12-12i19.p1k chr07 62 61 23658 23642 F 0 0.00 1316 reject_bad_break 0 ALIGNMENT 912 Y12-12i19.p1k chr07 62 1130 23643 24724 F 1069 96.26 1316 reject_bad_break 0 ALIGNMENT 0 Y12-12i19.p1k chr15 812 84 427965 427964 C 729 0.00 1316 reject_low 2 ALIGNMENT 23 Y12-12i19.p1k chr15 83 47 427964 428000 C 37 91.89 1316 reject_low 2 ALIGNMENT 189 Y12-12i19.p1k chr06 924 347 254466 255043 C 578 78.55 1316 reject_low 1 ALIGNMENT 20 Y12-12i19.p1k chr09 47 71 376611 376635 F 25 100.00 1316 reject_low 4 ALIGNMENT 889 Y12-12i20.q1k chr11 36 1131 114968 116076 F 1096 94.71 1359 accept 0 ALIGNMENT 730 Y12-12i20.p1k chr11 952 46 117609 118509 C 907 94.71 1207 accept 0 ALIGNMENT 1016 Y12-12i22.p1k chr11 22 1226 205004 206217 F 1205 95.93 1406 accept 0 ALIGNMENT 199 Y12-12i22.q1k chr11 690 380 208943 209240 C 311 90.03 1254 accept 0 ALIGNMENT 1022 Y12-12j01.q1k chr13 1250 31 498414 499648 C 1220 96.23 1286 accept 0 ALIGNMENT 906 Y12-12j01.p1k chr13 20 1008 495193 496194 F 989 98.28 1420 accept 0 ALIGNMENT 1045 Y12-12j02.p1k chr12 20 1183 462868 464050 F 1164 97.34 1449 accept 1 ALIGNMENT 1066 Y12-12j02.q1k chr12 1289 30 457182 458449 C 1260 95.63 1302 accept 0 ALIGNMENT 1045 Y12-12j02.p1k chr12 20 1183 453731 454913 F 1164 97.34 1449 accept 0 ALIGNMENT 1066 Y12-12j02.q1k chr12 1289 30 466319 467586 C 1260 95.63 1302 accept 1 ALIGNMENT 0 Y12-12j03.p1k chr10 956 534 293009 293008 C 423 0.00 1412 reject_low 1 ALIGNMENT 458 Y12-12j03.p1k chr10 1236 580 292399 293057 C 657 91.63 1412 accept 0 ALIGNMENT 409 Y12-12j03.p1k chr10 533 21 293008 293529 C 513 93.96 1412 reject_low 1 ALIGNMENT 0 Y12-12j03.p1k chr10 579 62 293058 293057 C 518 0.00 1412 accept 0 ALIGNMENT 982 Y12-12j03.q1k chr10 32 1197 287875 289049 F 1166 95.63 1336 accept 0 ALIGNMENT 911 Y12-12j04.p1k chr12 1092 21 937018 938106 C 1072 95.90 1355 accept 0 ALIGNMENT 962 Y12-12j04.q1k chr12 33 1203 932087 933284 F 1171 95.05 1339 accept 0 ALIGNMENT 867 Y12-12j05.p1k chr05 10 1021 70778 71805 F 1012 96.15 1356 accept 0 ALIGNMENT 933 Y12-12j05.q1k chr05 1177 29 74780 75953 C 1149 95.39 1284 accept 0 ALIGNMENT 0 Y12-12j06.p1k chr10 898 62 121212 121211 C 837 0.00 1380 reject_low 4 ALIGNMENT 0 Y12-12j06.p1k chr10 906 62 120703 120702 C 845 0.00 1380 reject_low 7 ALIGNMENT 155 Y12-12j06.p1k chr11 446 731 141799 142084 F 286 84.97 1380 reject_low 1 ALIGNMENT 0 Y12-12j06.p1k chr10 1010 1011 120838 120927 C 0 0.00 1380 reject_low 6 ALIGNMENT 0 Y12-12j06.p1k chr10 841 62 121155 121154 C 780 0.00 1380 reject_low 3 ALIGNMENT 39 Y12-12j06.p1k chr10 969 888 120718 120799 C 82 82.93 1380 reject_low 5 ALIGNMENT 0 Y12-12j06.p1k chr11 62 445 141799 141798 F 384 0.00 1380 reject_low 1 ALIGNMENT 21 Y12-12j06.p1k chr10 940 907 120669 120702 C 34 88.24 1380 reject_low 7 ALIGNMENT 64 Y12-12j06.p1k chr10 1049 899 121053 121211 C 151 82.78 1380 reject_low 4 ALIGNMENT 91 Y12-12j06.p1k chr10 1010 852 120928 121087 C 159 86.79 1380 reject_low 6 ALIGNMENT 0 Y12-12j06.p1k chr10 949 950 120795 120932 C 0 0.00 1380 reject_low 8 ALIGNMENT 980 Y12-12j06.p1k chr10 1073 22 120970 122031 C 1052 98.48 1380 accept 0 ALIGNMENT 0 Y12-12j06.p1k chr10 851 62 121088 121087 C 790 0.00 1380 reject_low 6 ALIGNMENT 96 Y12-12j06.p1k chr10 1049 842 120939 121154 C 208 83.65 1380 reject_low 3 ALIGNMENT 49 Y12-12j06.p1k chr10 958 842 120924 121040 C 117 81.20 1380|9,0 reject_low 8 ALIGNMENT 21 Y12-12j06.p1k chr10 1073 1010 120775 120838 C 64 82.81 1380|0,1 reject_low 6 ALIGNMENT 0 Y12-12j06.p1k chr10 841 62 121041 121040 C 780 0.00 1380 reject_low 8 ALIGNMENT 47 Y12-12j06.p1k chr10 1020 940 120720 120804 C 81 87.65 1380|0,10 reject_low 8 ALIGNMENT 0 Y12-12j06.p1k chr11 732 878 142084 142083 F 147 0.00 1380 reject_low 1 ALIGNMENT 1020 Y12-12j06.q1k chr10 33 1221 117899 119086 F 1189 96.05 1327 accept 0 ALIGNMENT 0 Y12-12j06.p1k chr10 747 878 122482 122481 F 132 0.00 1380 reject_low 2 ALIGNMENT 0 Y12-12j06.p1k chr10 887 62 120800 120799 C 826 0.00 1380 reject_low 5 ALIGNMENT 0 Y12-12j06.p1k chr10 62 512 122249 122248 F 451 0.00 1380 reject_low 2 ALIGNMENT 142 Y12-12j06.p1k chr10 513 746 122249 122482 F 234 87.18 1380 reject_low 2 ALIGNMENT 86 Y12-12j08.q1k chr03 829 1062 1191 1426 F 234 81.62 1342 reject_low 3 ALIGNMENT 26 Y12-12j08.q1k chr11 815 873 665066 665123 F 59 84.75 1342 reject_low 4 ALIGNMENT 755 Y12-12j08.p1k chr03 1038 20 5677 6722 C 1019 92.84 1346 accept 0 ALIGNMENT 0 Y12-12j08.q1k chr11 62 814 665066 665065 F 753 0.00 1342 reject_low 4 ALIGNMENT 846 Y12-12j08.q1k chr03 38 1081 3293 4340 F 1044 94.44 1342 accept 0 ALIGNMENT 0 Y12-12j08.q1k chr08 1016 1001 8044 8048 C 16 0.00 1342 reject_low 5 ALIGNMENT 0 Y12-12j08.q1k chr08 911 62 8138 8137 C 850 0.00 1342 reject_low 5 ALIGNMENT 33 Y12-12j08.q1k chr08 1000 912 8049 8137 C 89 83.15 1342 reject_low 5 ALIGNMENT 110 Y12-12j08.q1k chr05 1062 829 566698 566933 C 234 85.04 1342 reject_low 2 ALIGNMENT 741 Y12-12j08.p1k chr11 20 1036 662684 663696 F 1017 93.02 1346 reject_low 1 ALIGNMENT 23 Y12-12j08.q1k chr08 1062 1017 7996 8043 C 46 86.96 1342 reject_low 5 ALIGNMENT 0 Y12-12j08.q1k chr03 62 828 1191 1190 F 767 0.00 1342 reject_low 3 ALIGNMENT 76 Y12-12j08.q1k chr11 890 1062 665130 665303 F 173 83.24 1342 reject_low 4 ALIGNMENT 0 Y12-12j08.q1k chr05 828 62 566934 566933 C 767 0.00 1342 reject_low 2 ALIGNMENT 0 Y12-12j08.q1k chr11 874 889 665124 665129 F 16 0.00 1342 reject_low 4 ALIGNMENT 1045 Y12-12j11.p1k chr07 1274 20 475368 476634 C 1255 95.78 1518 accept 0 ALIGNMENT 1061 Y12-12j11.q1k chr07 32 1199 471489 472665 F 1168 97.86 1396 accept 0 ALIGNMENT 0 Y12-12j12.q1k chr04 889 238 1243221 1243220 C 652 0.00 1389 reject_low 1 ALIGNMENT 212 Y12-12j12.q1k chr04 237 25 1243220 1243432 C 213 100.00 1389 reject_low 1 ALIGNMENT 1066 Y12-12j12.p1k chr15 25 1172 570417 571571 F 1148 98.17 1467 accept 0 ALIGNMENT 986 Y12-12j12.q1k chr15 1183 25 574127 575310 C 1159 96.03 1389 accept 0 ALIGNMENT 906 Y12-12j13.p1k chr03 22 1112 20235 21333 F 1091 96.43 1360 accept 0 ALIGNMENT 918 Y12-12j13.q1k chr03 1176 34 25014 26175 C 1143 94.58 1337 accept 0 ALIGNMENT 1060 Y12-12j14.p1k chr14 1213 21 369540 370742 C 1193 97.07 1407 accept 0 ALIGNMENT 947 Y12-12j14.q1k chr14 36 1104 365854 366936 F 1069 96.91 1328 accept 0 ALIGNMENT 524 Y12-12j15.q1k chr12 725 39 456767 457467 C 687 91.70 992 reject_low 1 ALIGNMENT 523 Y12-12j15.q1k chr12 720 39 465909 466604 C 682 91.79 992 accept 0 ALIGNMENT 0 Y12-12j15.p1k chr12 62 565 489754 489753 F 504 0.00 1375 reject_low 2 ALIGNMENT 728 Y12-12j15.p1k chr12 218 1091 451419 452324 F 874 95.54 1375 reject_low 1 ALIGNMENT 439 Y12-12j15.p1k chr12 566 1091 489754 490292 F 526 95.63 1375 reject_low 2 ALIGNMENT 0 Y12-12j15.p1k chr12 62 217 451419 451418 F 156 0.00 1375 reject_low 1 ALIGNMENT 866 Y12-12j15.p1k chr12 22 1091 460353 461461 F 1070 94.86 1375 accept 0 ALIGNMENT 0 Y12-12j17.q1k chr12 62 1025 472464 472463 F 964 0.00 1372 reject_low 5 ALIGNMENT 0 Y12-12j17.q1k chr06 911 766 31623 31622 C 146 0.00 1372 reject_low 3 ALIGNMENT 0 Y12-12j17.q1k chr12 62 1025 482044 482043 F 964 0.00 1372 reject_low 6 ALIGNMENT 0 Y12-12j17.q1k chr06 657 62 31730 31729 C 596 0.00 1372 reject_low 3 ALIGNMENT 90 Y12-12j17.q1k chr12 1026 1153 489348 489471 F 128 90.62 1372 reject_low 4 ALIGNMENT 905 Y12-12j17.p1k chr12 1011 18 453954 454958 C 994 97.79 1337 reject_low 1 ALIGNMENT 0 Y12-12j17.q1k chr12 62 1025 485696 485695 F 964 0.00 1372 reject_low 7 ALIGNMENT 94 Y12-12j17.q1k chr06 765 658 31622 31729 C 108 98.15 1372 reject_low 3 ALIGNMENT 86 Y12-12j17.q1k chr12 1026 1148 482044 482162 F 123 91.06 1372 reject_low 6 ALIGNMENT 86 Y12-12j17.q1k chr12 1026 1148 485696 485814 F 123 91.06 1372 reject_low 7 ALIGNMENT 985 Y12-12j17.q1k chr12 36 1148 467824 468930 F 1113 97.75 1372 reject_low 2 ALIGNMENT 86 Y12-12j17.q1k chr12 1026 1148 472464 472582 F 123 91.06 1372 reject_low 5 ALIGNMENT 1014 Y12-12j17.q1k chr12 36 1272 458687 459927 F 1237 95.63 1372 accept 0 ALIGNMENT 905 Y12-12j17.p1k chr12 1011 18 463091 464095 C 994 97.79 1337 accept 0 ALIGNMENT 0 Y12-12j17.q1k chr12 62 1025 489348 489347 F 964 0.00 1372 reject_low 4 ALIGNMENT 1023 Y12-12j18.p1k chr04 1229 24 420753 421972 C 1206 95.85 1420 accept 0 ALIGNMENT 876 Y12-12j18.q1k chr04 36 1072 416250 417304 F 1037 95.85 1269 accept 0 ALIGNMENT 609 Y12-12j19.q1k chr04 36 1089 529669 530725 F 1054 86.05 1379 reject_low 2 ALIGNMENT 609 Y12-12j19.q1k chr04 36 1089 533554 534610 F 1054 86.05 1379 reject_low 3 ALIGNMENT 1039 Y12-12j19.p1k chr01 1319 20 39466 40773 C 1300 94.92 1365 accept_chi 0 ALIGNMENT 750 Y12-12j19.q1k chr04 36 1199 537439 538617 F 1164 88.57 1379 accept_chi 1 ALIGNMENT 994 Y12-12j20.q1k chr04 1188 29 469320 470491 C 1160 96.03 1366 accept_chi 1 ALIGNMENT 1033 Y12-12j20.p1k chr15 23 1207 603654 604849 F 1185 97.05 1357 accept_chi 0 ALIGNMENT 762 Y12-12j21.p1k chr06 963 65 170670 171569 C 899 96.00 1280 accept 0 ALIGNMENT 966 Y12-12j21.q1k chr06 36 1151 164919 166045 F 1116 96.59 1277 accept 0 ALIGNMENT 144 Y12-12j22.p1k chr15 718 57 828508 829145 C 662 76.59 1365 accept 0 ALIGNMENT 651 Y12-12j23.q1k chr02 37 767 264763 265493 F 731 97.95 1138 ambiguous_trans 2 ALIGNMENT 169 Y12-12j23.q1k chr01 746 435 165847 166163 C 312 86.54 1138 ambiguous_trans 22 ALIGNMENT 432 Y12-12j23.q1k chr05 750 37 443409 444127 C 714 88.66 1138 ambiguous_trans 18 ALIGNMENT 622 Y12-12j23.q1k chr14 746 37 96630 97339 C 710 97.46 1138 ambiguous_trans 8 ALIGNMENT 613 Y12-12j23.q1k chr13 37 766 189354 190083 F 730 96.30 1138 ambiguous_trans 7 ALIGNMENT 640 Y12-12j23.q1k chr02 37 746 226226 226935 F 710 98.31 1138 ambiguous_trans 5 ALIGNMENT 599 Y12-12j23.q1k chr07 37 746 540954 541669 F 710 96.48 1138 ambiguous_trans 13 ALIGNMENT 656 Y12-12j23.q1k chr07 770 37 817394 818127 C 734 98.09 1138 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-12j23.q1k chr07 62 631 817278 817277 F 570 0.00 1138 ambiguous_trans 23 ALIGNMENT 0 Y12-12j23.q1k chr16 551 62 850393 850392 C 490 0.00 1138 ambiguous_trans_ua 24 ALIGNMENT 503 Y12-12j23.q1k chr15 37 746 122892 123607 F 710 91.97 1138 ambiguous_trans 16 ALIGNMENT 0 Y12-12j23.q1k chr05 704 573 492692 492691 C 132 0.00 1138 ambiguous_trans 17 ALIGNMENT 613 Y12-12j23.q1k chr08 766 37 543610 544339 C 730 96.30 1138 ambiguous_trans 6 ALIGNMENT 991 Y12-12j23.p1k chr07 22 1182 704706 705870 F 1161 96.64 1352 accept 0 ALIGNMENT 0 Y12-12j23.q1k chr16 704 593 850354 850353 C 112 0.00 1138 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-12j23.q1k chr01 434 62 166164 166163 C 373 0.00 1138 ambiguous_trans 22 ALIGNMENT 592 Y12-12j23.q1k chr12 768 37 215079 215816 C 732 95.36 1138 ambiguous_trans_ua 9 ALIGNMENT 429 Y12-12j23.q1k chr12 746 37 475995 476709 C 710 88.59 1138 ambiguous_trans 20 ALIGNMENT 21 Y12-12j23.q1k chr05 434 461 443365 443392 F 28 92.86 1138 ambiguous_trans_ua 25 ALIGNMENT 652 Y12-12j23.q1k chr15 37 766 600005 600734 F 730 98.08 1138 ambiguous_trans 3 ALIGNMENT 44 Y12-12j23.q1k chr07 632 735 817278 817379 F 104 81.73 1138 ambiguous_trans 23 ALIGNMENT 0 Y12-12j23.q1k chr05 462 704 443392 443391 F 243 0.00 1138 ambiguous_trans_ua 25 ALIGNMENT 589 Y12-12j23.q1k chr16 37 768 849601 850338 F 732 95.22 1138 ambiguous_trans 10 ALIGNMENT 0 Y12-12j23.q1k chr05 62 433 443365 443364 F 372 0.00 1138 ambiguous_trans_ua 25 ALIGNMENT 575 Y12-12j23.q1k chr16 746 37 850645 851360 C 710 95.35 1138 ambiguous_trans 15 ALIGNMENT 590 Y12-12j23.q1k chr13 766 37 372696 373431 C 730 95.34 1138 ambiguous_trans 11 ALIGNMENT 28 Y12-12j23.q1k chr16 592 552 850353 850392 C 41 95.12 1138 ambiguous_trans_ua 24 ALIGNMENT 643 Y12-12j23.q1k chr13 746 37 357024 357733 C 710 98.45 1138 ambiguous_trans 4 ALIGNMENT 461 Y12-12j23.q1k chr05 572 37 492691 493226 C 536 97.20 1138 ambiguous_trans 17 ALIGNMENT 599 Y12-12j23.q1k chr10 37 746 483151 483866 F 710 96.48 1138 ambiguous_trans 14 ALIGNMENT 429 Y12-12j23.q1k chr01 746 37 160259 160973 C 710 88.59 1138 ambiguous_trans 19 ALIGNMENT 584 Y12-12j23.q1k chr04 37 766 1100952 1101687 F 730 95.07 1138 ambiguous_trans 12 ALIGNMENT 425 Y12-12j23.q1k chr13 37 718 201521 202207 F 682 89.59 1138 ambiguous_trans 21 ALIGNMENT 959 Y12-12j24.p1k chr15 1277 21 991143 992414 C 1257 93.56 1341 accept 0 ALIGNMENT 956 Y12-12j24.q1k chr15 27 1104 987040 988118 F 1078 96.94 1211 accept 0 ALIGNMENT 0 Y12-12k01.q1k chr03 62 737 168290 168289 F 676 0.00 1263 reject_low 4 ALIGNMENT 0 Y12-12k01.q1k chr04 62 738 645143 645142 F 677 0.00 1263 reject_low 7 ALIGNMENT 0 Y12-12k01.q1k chr05 734 62 250366 250365 C 673 0.00 1263 reject_low 2 ALIGNMENT 610 Y12-12k01.p1k chr05 702 20 133476 134159 C 683 97.07 1435 accept 0 ALIGNMENT 0 Y12-12k01.q1k chr03 811 848 168362 168361 F 38 0.00 1263 reject_low 4 ALIGNMENT 0 Y12-12k01.q1k chr02 848 816 350826 350825 C 33 0.00 1263 reject_low 1 ALIGNMENT 0 Y12-12k01.q1k chr04 62 737 802720 802719 F 676 0.00 1263 reject_low 5 ALIGNMENT 0 Y12-12k01.q1k chr13 62 743 808245 808244 F 682 0.00 1263 reject_low 9 ALIGNMENT 69 Y12-12k01.q1k chr02 815 738 350825 350903 C 78 97.44 1263 reject_low 1 ALIGNMENT 0 Y12-12k01.q1k chr04 743 62 521040 521039 C 682 0.00 1263 reject_low 8 ALIGNMENT 63 Y12-12k01.q1k chr04 738 810 802720 802792 F 73 95.89 1263 reject_low 5 ALIGNMENT 0 Y12-12k01.q1k chr04 811 848 802792 802791 F 38 0.00 1263 reject_low 5 ALIGNMENT 0 Y12-12k01.q1k chr04 811 848 645214 645213 F 38 0.00 1263 reject_low 7 ALIGNMENT 63 Y12-12k01.q1k chr05 810 735 250290 250365 C 76 94.74 1263 reject_low 2 ALIGNMENT 0 Y12-12k01.q1k chr13 811 848 808311 808310 F 38 0.00 1263 reject_low 9 ALIGNMENT 0 Y12-12k01.q1k chr08 848 811 134320 134319 C 38 0.00 1263 reject_low 6 ALIGNMENT 55 Y12-12k01.q1k chr13 744 810 808245 808311 F 67 94.03 1263 reject_low 9 ALIGNMENT 0 Y12-12k01.q1k chr05 848 811 250291 250290 C 38 0.00 1263 reject_low 2 ALIGNMENT 61 Y12-12k01.q1k chr12 736 810 448643 448717 F 75 94.67 1263 reject_low 3 ALIGNMENT 63 Y12-12k01.q1k chr08 810 738 134319 134391 C 73 95.89 1263 reject_low 6 ALIGNMENT 0 Y12-12k01.q1k chr02 737 62 350904 350903 C 676 0.00 1263 reject_low 1 ALIGNMENT 925 Y12-12k01.q1k chr05 33 1185 130371 131503 F 1153 96.01 1263 accept 0 ALIGNMENT 0 Y12-12k01.q1k chr04 848 811 520974 520973 C 38 0.00 1263 reject_low 8 ALIGNMENT 61 Y12-12k01.q1k chr04 810 744 520973 521039 C 67 97.01 1263 reject_low 8 ALIGNMENT 0 Y12-12k01.q1k chr08 737 62 134392 134391 C 676 0.00 1263 reject_low 6 ALIGNMENT 0 Y12-12k01.q1k chr12 811 848 448717 448716 F 38 0.00 1263 reject_low 3 ALIGNMENT 0 Y12-12k01.q1k chr12 62 735 448643 448642 F 674 0.00 1263 reject_low 3 ALIGNMENT 62 Y12-12k01.q1k chr04 739 810 645143 645214 F 72 95.83 1263 reject_low 7 ALIGNMENT 63 Y12-12k01.q1k chr03 738 810 168290 168362 F 73 95.89 1263 reject_low 4 ALIGNMENT 22 Y12-12k02.p1k chr12 643 677 329731 329765 F 35 97.14 1368 reject_low 13 ALIGNMENT 21 Y12-12k02.p1k chr02 773 738 505207 505242 C 36 94.44 1368 reject_low 9 ALIGNMENT 0 Y12-12k02.p1k chr16 482 62 522273 522272 C 421 0.00 1368 reject_low 2 ALIGNMENT 972 Y12-12k02.q1k chr16 27 1188 518543 519691 F 1162 95.61 1264 accept 0 ALIGNMENT 0 Y12-12k02.p1k chr02 737 62 505243 505242 C 676 0.00 1368 reject_low 9 ALIGNMENT 22 Y12-12k02.p1k chr08 630 680 420557 420610 F 51 92.16 1368 reject_low 12 ALIGNMENT 0 Y12-12k02.p1k chr16 62 629 606366 606365 F 568 0.00 1368 reject_low 10 ALIGNMENT 0 Y12-12k02.p1k chr06 715 62 160595 160594 C 654 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-12k02.p1k chr09 758 851 169500 169499 F 94 0.00 1368 reject_low 6 ALIGNMENT 22 Y12-12k02.p1k chr14 686 629 579934 579991 C 58 89.66 1368 reject_low 7 ALIGNMENT 158 Y12-12k02.p1k chr16 680 483 522072 522272 C 198 95.96 1368 reject_low 2 ALIGNMENT 27 Y12-12k02.p1k chr09 714 757 169457 169500 F 44 95.45 1368 reject_low 6 ALIGNMENT 0 Y12-12k02.p1k chr02 851 774 505208 505207 C 78 0.00 1368 reject_low 9 ALIGNMENT 0 Y12-12k02.p1k chr02 716 62 780460 780459 C 655 0.00 1368 reject_low 4 ALIGNMENT 0 Y12-12k02.p1k chr14 628 62 579992 579991 C 567 0.00 1368 reject_low 7 ALIGNMENT 0 Y12-12k02.p1k chr02 628 62 780443 780442 C 567 0.00 1368 reject_low 3 ALIGNMENT 0 Y12-12k02.p1k chr16 702 62 522125 522124 C 641 0.00 1368 reject_low 1 ALIGNMENT 303 Y12-12k02.p1k chr16 1262 703 521552 522124 C 560 86.43 1368 reject_low 1 ALIGNMENT 0 Y12-12k02.p1k chr09 62 713 169457 169456 F 652 0.00 1368 reject_low 6 ALIGNMENT 22 Y12-12k02.p1k chr02 670 637 455752 455785 C 34 97.06 1368 reject_low 14 ALIGNMENT 0 Y12-12k02.p1k chr08 62 629 420557 420556 F 568 0.00 1368 reject_low 12 ALIGNMENT 0 Y12-12k02.p1k chr16 671 851 606406 606405 F 181 0.00 1368 reject_low 10 ALIGNMENT 35 Y12-12k02.p1k chr02 773 717 780403 780459 C 57 94.74 1368 reject_low 4 ALIGNMENT 0 Y12-12k02.p1k chr02 851 671 455753 455752 C 181 0.00 1368 reject_low 14 ALIGNMENT 25 Y12-12k02.p1k chr06 752 716 160558 160594 C 37 97.30 1368 reject_low 11 ALIGNMENT 26 Y12-12k02.p1k chr13 748 713 44375 44410 C 36 100.00 1368 reject_low 8 ALIGNMENT 25 Y12-12k02.p1k chr16 630 670 606366 606406 F 41 97.56 1368 reject_low 10 ALIGNMENT 0 Y12-12k02.p1k chr13 851 749 44376 44375 C 103 0.00 1368 reject_low 8 ALIGNMENT 0 Y12-12k02.p1k chr12 678 851 329765 329764 F 174 0.00 1368 reject_low 13 ALIGNMENT 0 Y12-12k02.p1k chr10 62 733 150063 150062 F 672 0.00 1368 reject_low 5 ALIGNMENT 0 Y12-12k02.p1k chr16 851 681 522073 522072 C 171 0.00 1368 reject_low 2 ALIGNMENT 35 Y12-12k02.p1k chr02 757 629 780317 780442 C 129 85.27 1368 reject_low 3 ALIGNMENT 0 Y12-12k02.p1k chr10 770 851 150098 150097 F 82 0.00 1368 reject_low 5 ALIGNMENT 0 Y12-12k02.p1k chr02 851 758 780318 780317 C 94 0.00 1368 reject_low 3 ALIGNMENT 0 Y12-12k02.p1k chr02 636 62 455786 455785 C 575 0.00 1368 reject_low 14 ALIGNMENT 0 Y12-12k02.p1k chr08 681 851 420610 420609 F 171 0.00 1368 reject_low 12 ALIGNMENT 0 Y12-12k02.p1k chr13 712 62 44411 44410 C 651 0.00 1368 reject_low 8 ALIGNMENT 606 Y12-12k02.p1k chr16 961 25 521862 522730 C 937 91.68 1368 accept 0 ALIGNMENT 27 Y12-12k02.p1k chr10 734 769 150063 150098 F 36 100.00 1368 reject_low 5 ALIGNMENT 0 Y12-12k02.p1k chr14 851 687 579935 579934 C 165 0.00 1368 reject_low 7 ALIGNMENT 0 Y12-12k02.p1k chr12 62 642 329731 329730 F 581 0.00 1368 reject_low 13 ALIGNMENT 0 Y12-12k02.p1k chr06 851 753 160559 160558 C 99 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-12k02.p1k chr02 851 774 780404 780403 C 78 0.00 1368 reject_low 4 ALIGNMENT 898 Y12-12k03.p1k chr13 21 1124 688563 689682 F 1104 95.29 1339 accept 0 ALIGNMENT 971 Y12-12k03.q1k chr13 1181 39 691505 692658 C 1143 96.15 1286 accept 0 ALIGNMENT 940 Y12-12k04.q1k chr02 24 1105 557275 558370 F 1082 96.49 1250 accept 0 ALIGNMENT 1023 Y12-12k04.p1k chr02 1235 22 559892 561123 C 1214 96.21 1353 accept 0 ALIGNMENT 950 Y12-12k07.q1k chr14 1083 31 211145 212208 C 1053 97.91 1331 accept 0 ALIGNMENT 931 Y12-12k07.p1k chr14 34 1183 208184 209336 F 1150 95.39 1379 accept 0 ALIGNMENT 983 Y12-12k08.q1k chr14 26 1204 534706 535893 F 1179 95.84 1393 accept 0 ALIGNMENT 969 Y12-12k08.p1k chr14 1140 20 538438 539573 C 1121 96.70 1367 accept 0 ALIGNMENT 873 Y12-12k09.p1k chr13 20 1017 860556 861564 F 998 96.99 1353 accept 0 ALIGNMENT 880 Y12-12k09.q1k chr13 1062 36 865310 866351 C 1027 96.98 1348 accept 0 ALIGNMENT 887 Y12-12k10.p1k chr16 21 1061 569216 570271 F 1041 96.16 1362 accept 0 ALIGNMENT 0 Y12-12k10.q1k chr06 927 62 162293 162292 C 866 0.00 1342 reject_low 2 ALIGNMENT 0 Y12-12k10.q1k chr04 920 62 992904 992903 C 859 0.00 1342 reject_low 1 ALIGNMENT 32 Y12-12k10.q1k chr06 984 928 162231 162292 C 57 87.72 1342 reject_low 2 ALIGNMENT 892 Y12-12k10.q1k chr16 1042 25 572208 573234 C 1018 97.25 1342 accept 0 ALIGNMENT 33 Y12-12k10.q1k chr04 984 921 992835 992903 C 64 85.94 1342 reject_low 1 ALIGNMENT 1007 Y12-12k12.q1k chr15 30 1253 1017613 1018837 F 1224 94.93 1265 accept 0 ALIGNMENT 981 Y12-12k12.p1k chr15 1233 24 1019669 1020894 C 1210 95.04 1422 accept 0 ALIGNMENT 872 Y12-12k13.p1k chr13 1107 23 737874 738966 C 1085 95.21 1357 accept 0 ALIGNMENT 1005 Y12-12k13.q1k chr13 36 1209 734353 735543 F 1174 96.93 1273 accept 0 ALIGNMENT 0 Y12-12k14.q1k chr13 638 62 44418 44417 C 577 0.00 1320 reject_low 3 ALIGNMENT 0 Y12-12k14.q1k chr02 644 62 780467 780466 C 583 0.00 1320 reject_low 4 ALIGNMENT 0 Y12-12k14.q1k chr14 644 62 70055 70054 C 583 0.00 1320 reject_low 2 ALIGNMENT 0 Y12-12k14.q1k chr14 890 674 70027 70026 C 217 0.00 1320 reject_low 2 ALIGNMENT 0 Y12-12k14.q1k chr02 890 670 780443 780442 C 221 0.00 1320 reject_low 4 ALIGNMENT 0 Y12-12k14.q1k chr13 890 669 44388 44387 C 222 0.00 1320 reject_low 3 ALIGNMENT 20 Y12-12k14.q1k chr02 669 645 780442 780466 C 25 100.00 1320 reject_low 4 ALIGNMENT 21 Y12-12k14.q1k chr13 668 639 44387 44417 C 30 93.33 1320 reject_low 3 ALIGNMENT 1038 Y12-12k14.q1k chr13 1278 35 514017 515262 C 1244 95.42 1320 accept 0 ALIGNMENT 23 Y12-12k14.q1k chr14 673 645 70026 70054 C 29 96.55 1320 reject_low 2 ALIGNMENT 1022 Y12-12k14.p1k chr13 24 1198 510004 511192 F 1175 96.26 1420 accept 0 ALIGNMENT 281 Y12-12k14.p1k chr12 32 368 202258 202595 F 337 95.25 1420 reject_low 1 ALIGNMENT 0 Y12-12k14.p1k chr12 369 860 202595 202594 F 492 0.00 1420 reject_low 1 ALIGNMENT 894 Y12-12k15.q1k chr02 1026 36 488182 489184 C 991 97.98 1215 accept 0 ALIGNMENT 986 Y12-12k15.p1k chr02 19 1241 483205 484441 F 1223 94.85 1375 accept 0 ALIGNMENT 1041 Y12-12k16.p1k chr13 26 1168 512598 513748 F 1143 97.73 1379 accept 0 ALIGNMENT 1027 Y12-12k16.q1k chr13 1275 32 517446 518699 C 1244 95.26 1296 accept 0 ALIGNMENT 970 Y12-12k17.q1k chr09 36 1152 362170 363303 F 1117 96.69 1294 accept_chi 0 ALIGNMENT 86 Y12-12k17.p1k chrm 18 277 9142 9413 F 260 86.15 1481 accept_chi 1 ALIGNMENT 922 Y12-12k18.q1k chr12 1174 35 466709 467864 C 1140 94.91 1316 reject_low 1 ALIGNMENT 1034 Y12-12k18.p1k chr12 26 1242 455542 456767 F 1217 95.65 1421 accept 0 ALIGNMENT 922 Y12-12k18.q1k chr12 1174 35 457572 458727 C 1140 94.91 1316 accept 0 ALIGNMENT 1035 Y12-12k18.p1k chr12 26 1194 464679 465851 F 1169 96.66 1421 reject_low 1 ALIGNMENT 980 Y12-12k19.p1k chr05 1120 17 341046 342165 C 1104 97.01 1338 accept 0 ALIGNMENT 1003 Y12-12k19.q1k chr05 35 1176 337915 339065 F 1142 96.85 1275 accept 0 ALIGNMENT 1059 Y12-12k20.p1k chr16 22 1284 507074 508348 F 1263 95.72 1411 accept 0 ALIGNMENT 1023 Y12-12k20.q1k chr16 1245 34 509578 510787 C 1212 96.37 1316 accept 0 ALIGNMENT 25 Y12-12k21.q1k chr15 945 994 344742 344791 F 50 84.00 1229 reject_low 9 ALIGNMENT 54 Y12-12k21.q1k chr15 697 782 345030 345115 F 86 88.37 1229 reject_low 14 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344943 344957 F 3 0.00 1229 reject_low 13 ALIGNMENT 809 Y12-12k21.q1k chr15 32 997 344077 345046 F 966 94.93 1229 accept_chi 1 ALIGNMENT 0 Y12-12k21.q1k chr15 62 652 345010 345009 F 591 0.00 1229 reject_low 8 ALIGNMENT 24 Y12-12k21.q1k chr15 653 693 345010 345050 F 41 87.80 1229 reject_low 8 ALIGNMENT 0 Y12-12k21.q1k chr15 62 732 344742 344741 F 671 0.00 1229 reject_low 4 ALIGNMENT 142 Y12-12k21.q1k chr15 697 958 344850 345115 F 262 85.11 1229 reject_low 12 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344871 344849 F 3 0.00 1229 reject_low 12 ALIGNMENT 0 Y12-12k21.q1k chr15 779 856 345147 345146 F 78 0.00 1229 reject_low 15 ALIGNMENT 0 Y12-12k21.q1k chr15 62 642 344892 344891 F 581 0.00 1229 reject_low 13,14,15 ALIGNMENT 20 Y12-12k21.q1k chr15 642 693 344747 344798 F 52 80.77 1229 reject_low 2,7 ALIGNMENT 25 Y12-12k21.q1k chr15 643 693 344892 344942 F 51 84.31 1229 reject_low 13,14,15 ALIGNMENT 947 Y12-12k21.p1k chr04 1215 32 1394242 1395438 C 1184 94.76 1296 accept_chi 0 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344871 344885 F 3 0.00 1229 reject_low 11 ALIGNMENT 0 Y12-12k21.q1k chr15 62 652 345046 345045 F 591 0.00 1229 reject_low 10 ALIGNMENT 34 Y12-12k21.q1k chr05 507 575 175462 175530 F 69 85.51 1229 reject_low 5 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344799 344777 F 3 0.00 1229 reject_low 7 ALIGNMENT 0 Y12-12k21.q1k chr05 62 284 175243 175242 F 223 0.00 1229 reject_low 5 ALIGNMENT 98 Y12-12k21.q1k chr15 805 997 344742 344938 F 193 83.94 1229 reject_low 6 ALIGNMENT 0 Y12-12k21.q1k chr15 62 804 344742 344741 F 743 0.00 1229 reject_low 6 ALIGNMENT 0 Y12-12k21.q1k chr05 381 506 175339 175461 F 126 0.00 1229 reject_low 5 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344943 345029 F 3 0.00 1229 reject_low 14 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344943 345065 F 3 0.00 1229 reject_low 15 ALIGNMENT 116 Y12-12k21.q1k chr15 697 854 344958 345115 F 158 91.77 1229 reject_low 13 ALIGNMENT 45 Y12-12k21.q1k chr05 285 380 175243 175338 F 96 83.33 1229 reject_low 5 ALIGNMENT 290 Y12-12k21.q1k chr15 697 1227 344814 345340 F 531 86.82 1229 reject_low 2 ALIGNMENT 150 Y12-12k21.q1k chr15 697 967 344886 345160 F 271 85.61 1229 reject_low 11 ALIGNMENT 24 Y12-12k21.q1k chr15 653 693 344830 344870 F 41 87.80 1229 reject_low 11,12 ALIGNMENT 144 Y12-12k21.q1k chr15 733 994 344742 345007 F 262 85.50 1229 reject_low 4 ALIGNMENT 0 Y12-12k21.q1k chr15 62 652 344830 344829 F 591 0.00 1229 reject_low 11,12 ALIGNMENT 0 Y12-12k21.q1k chr15 783 856 345115 345114 F 74 0.00 1229 reject_low 14 ALIGNMENT 0 Y12-12k21.q1k chr15 62 944 344742 344741 F 883 0.00 1229 reject_low 9 ALIGNMENT 41 Y12-12k21.q1k chr15 697 778 345066 345147 F 82 84.15 1229 reject_low 15 ALIGNMENT 0 Y12-12k21.q1k chr15 694 856 345050 345049 F 163 0.00 1229 reject_low 8 ALIGNMENT 0 Y12-12k21.q1k chr15 694 696 344799 344813 F 3 0.00 1229 reject_low 2 ALIGNMENT 0 Y12-12k21.q1k chr15 694 856 345086 345085 F 163 0.00 1229 reject_low 10 ALIGNMENT 0 Y12-12k21.q1k chr15 62 504 344550 344549 F 443 0.00 1229 reject_low 3 ALIGNMENT 171 Y12-12k21.q1k chr15 697 994 344778 345079 F 298 86.24 1229 reject_low 7 ALIGNMENT 334 Y12-12k21.q1k chr15 505 914 344550 344960 F 410 94.15 1229 reject_low 3 ALIGNMENT 0 Y12-12k21.q1k chr05 576 856 175530 175529 F 281 0.00 1229 reject_low 5 ALIGNMENT 0 Y12-12k21.q1k chr15 62 641 344747 344746 F 580 0.00 1229 reject_low 2,7 ALIGNMENT 21 Y12-12k21.q1k chr15 653 693 345046 345086 F 41 85.37 1229 reject_low 10 ALIGNMENT 1063 Y12-12k22.p1k chr15 20 1273 430634 431890 F 1254 96.09 1348 accept_chi 0 ALIGNMENT 981 Y12-12k22.q1k chr14 29 1227 274516 275727 F 1199 94.66 1232 accept_chi 1 ALIGNMENT 928 Y12-12k23.q1k chr10 1138 39 397866 398958 C 1100 96.09 1228 accept 0 ALIGNMENT 996 Y12-12k23.p1k chr10 20 1142 395045 396173 F 1123 97.42 1381 accept 0 ALIGNMENT 969 Y12-12k24.q1k chr05 1159 35 290458 291589 C 1125 95.64 1191 accept 0 ALIGNMENT 632 Y12-12k24.p1k chr05 23 898 286871 287773 F 876 91.32 1065 accept 0 ALIGNMENT 383 Y12-12l02.p1k chr07 19 527 394887 395394 F 509 92.93 1351 reject_bad_break 0 ALIGNMENT 115 Y12-12l02.q1k chr07 1271 967 397744 398032 C 305 84.26 1271 reject_bad_break 0 ALIGNMENT 0 Y12-12l02.q1k chr07 966 957 398033 398036 C 10 0.00 1271 reject_bad_break 0 ALIGNMENT 858 Y12-12l02.q1k chr07 956 30 398037 398951 C 927 98.49 1271 reject_bad_break 0 ALIGNMENT 71 Y12-12l03.p1k chr16 597 704 856443 856550 F 108 89.81 1374|1,0 reject_low 29 ALIGNMENT 0 Y12-12l03.p1k chr04 823 705 802799 802899 C 119 0.00 1374 reject_low 27 ALIGNMENT 0 Y12-12l03.p1k chr02 458 62 221297 221296 C 397 0.00 1374 reject_low 5 ALIGNMENT 76 Y12-12l03.p1k chr11 595 704 302161 302270 F 110 90.91 1374 reject_low 18 ALIGNMENT 1003 Y12-12l03.q1k chr12 33 1219 445505 446691 F 1187 95.62 1320 accept 0 ALIGNMENT 0 Y12-12l03.p1k chr06 851 701 137660 137659 C 151 0.00 1374 reject_low 21 ALIGNMENT 72 Y12-12l03.p1k chr16 705 597 844407 844515 C 109 89.91 1374 reject_low 30 ALIGNMENT 0 Y12-12l03.p1k chr02 851 706 221040 221039 C 146 0.00 1374 reject_low 5 ALIGNMENT 0 Y12-12l03.p1k chr16 62 556 810401 810400 F 495 0.00 1374 reject_low 22 ALIGNMENT 74 Y12-12l03.p1k chr04 901 820 645143 645224 C 82 97.56 1374 reject_low 2 ALIGNMENT 71 Y12-12l03.p1k chr16 704 597 849999 850106 C 108 89.81 1374 reject_low 32 ALIGNMENT 54 Y12-12l03.p1k chr06 598 465 158471 158603 C 134 82.84 1374 reject_low 13 ALIGNMENT 0 Y12-12l03.p1k chr16 62 556 850353 850352 F 495 0.00 1374 reject_low 28,29 ALIGNMENT 0 Y12-12l03.p1k chr08 598 598 134100 134110 F 1 0.00 1374 reject_low 33 ALIGNMENT 72 Y12-12l03.p1k chr04 825 897 520968 521040 F 73 100.00 1374 reject_low 4 ALIGNMENT 0 Y12-12l03.p1k chr16 62 556 856392 856391 F 495 0.00 1374 reject_low 26 ALIGNMENT 79 Y12-12l03.p1k chr13 518 692 463258 463441 F 175 84.57 1374 reject_low 16 ALIGNMENT 0 Y12-12l03.p1k chr07 705 851 817729 817728 F 147 0.00 1374 reject_low 7 ALIGNMENT 71 Y12-12l03.p1k chr16 597 704 850855 850962 F 108 89.81 1374|1,0 reject_low 28 ALIGNMENT 0 Y12-12l03.p1k chr02 464 62 226875 226874 C 403 0.00 1374 reject_low 11 ALIGNMENT 25 Y12-12l03.p1k chr16 596 557 844526 844566 C 40 92.50 1374 reject_low 30 ALIGNMENT 86 Y12-12l03.p1k chr11 521 704 457921 458114 F 184 84.78 1374 reject_low 14 ALIGNMENT 0 Y12-12l03.p1k chr16 598 597 850393 850855 F 0 0.00 1374 reject_low 28 ALIGNMENT 0 Y12-12l03.p1k chr16 596 597 844516 844525 C 0 0.00 1374 reject_low 30 ALIGNMENT 0 Y12-12l03.p1k chr16 598 597 850393 856443 F 0 0.00 1374 reject_low 29 ALIGNMENT 0 Y12-12l03.p1k chr15 556 62 117861 117860 C 495 0.00 1374 reject_low 31 ALIGNMENT 0 Y12-12l03.p1k chr16 556 62 850158 850157 C 495 0.00 1374 reject_low 32 ALIGNMENT 0 Y12-12l03.p1k chr10 62 531 354600 354599 F 470 0.00 1374 reject_low 19 ALIGNMENT 73 Y12-12l03.p1k chr05 825 901 250285 250361 F 77 98.70 1374 reject_low 3 ALIGNMENT 0 Y12-12l03.p1k chr11 62 520 457921 457920 F 459 0.00 1374 reject_low 14 ALIGNMENT 37 Y12-12l03.p1k chr08 526 597 134028 134099 F 72 88.89 1374 reject_low 33 ALIGNMENT 0 Y12-12l03.p1k chr16 556 62 844567 844566 C 495 0.00 1374 reject_low 30 ALIGNMENT 0 Y12-12l03.p1k chr07 464 62 931942 931941 C 403 0.00 1374 reject_low 12 ALIGNMENT 35 Y12-12l03.p1k chr06 704 557 143535 143692 C 148 77.03 1374 reject_low 24 ALIGNMENT 0 Y12-12l03.p1k chr11 705 851 458114 458113 F 147 0.00 1374 reject_low 14 ALIGNMENT 35 Y12-12l03.p1k chr06 704 557 137908 138065 C 148 77.03 1374 reject_low 23 ALIGNMENT 0 Y12-12l03.p1k chr06 556 62 138066 138065 C 495 0.00 1374 reject_low 23 ALIGNMENT 95 Y12-12l03.p1k chr02 704 465 265161 265411 C 240 81.67 1374 reject_low 6 ALIGNMENT 25 Y12-12l03.p1k chr15 596 557 117820 117860 C 40 92.50 1374 reject_low 31 ALIGNMENT 0 Y12-12l03.p1k chr07 62 464 817479 817478 F 403 0.00 1374 reject_low 7 ALIGNMENT 0 Y12-12l03.p1k chr16 597 851 850844 850843 F 255 0.00 1374 reject_low 25 ALIGNMENT 0 Y12-12l03.p1k chr09 62 531 197304 197303 F 470 0.00 1374 reject_low 20 ALIGNMENT 0 Y12-12l03.p1k chr04 62 824 520968 520967 F 763 0.00 1374 reject_low 4 ALIGNMENT 0 Y12-12l03.p1k chr11 62 594 302161 302160 F 533 0.00 1374 reject_low 18 ALIGNMENT 0 Y12-12l03.p1k chr16 712 851 810565 810564 F 140 0.00 1374 reject_low 22 ALIGNMENT 0 Y12-12l03.p1k chr02 851 705 265162 265161 C 147 0.00 1374 reject_low 6 ALIGNMENT 0 Y12-12l03.p1k chr14 62 464 96691 96690 F 403 0.00 1374 reject_low 8 ALIGNMENT 0 Y12-12l03.p1k chr16 597 851 856432 856431 F 255 0.00 1374 reject_low 26 ALIGNMENT 25 Y12-12l03.p1k chr16 596 557 850117 850157 C 40 92.50 1374 reject_low 32 ALIGNMENT 0 Y12-12l03.p1k chr16 596 597 850107 850116 C 0 0.00 1374 reject_low 32 ALIGNMENT 95 Y12-12l03.p1k chr07 465 704 817479 817729 F 240 81.67 1374 reject_low 7 ALIGNMENT 97 Y12-12l03.p1k chr02 705 459 221039 221296 C 247 81.38 1374 reject_low 5 ALIGNMENT 0 Y12-12l03.p1k chr16 62 556 850804 850803 F 495 0.00 1374 reject_low 25 ALIGNMENT 0 Y12-12l03.p1k chr06 851 705 143536 143535 C 147 0.00 1374 reject_low 24 ALIGNMENT 0 Y12-12l03.p1k chr06 851 705 137909 137908 C 147 0.00 1374 reject_low 23 ALIGNMENT 60 Y12-12l03.p1k chr06 700 545 137659 137819 C 156 83.33 1374 reject_low 21 ALIGNMENT 0 Y12-12l03.p1k chr04 521 62 803093 803092 C 460 0.00 1374 reject_low 27 ALIGNMENT 0 Y12-12l03.p1k chr16 705 851 850962 850961 F 147 0.00 1374 reject_low 28 ALIGNMENT 0 Y12-12l03.p1k chr02 464 62 259827 259826 C 403 0.00 1374 reject_low 10 ALIGNMENT 71 Y12-12l03.p1k chr15 704 597 117702 117809 C 108 89.81 1374 reject_low 31 ALIGNMENT 0 Y12-12l03.p1k chr03 62 546 142910 142909 F 485 0.00 1374 reject_low 17 ALIGNMENT 72 Y12-12l03.p1k chr10 532 681 354600 354759 F 150 85.33 1374 reject_low 19 ALIGNMENT 0 Y12-12l03.p1k chr08 672 817 134183 134306 F 146 0.00 1374 reject_low 33 ALIGNMENT 0 Y12-12l03.p1k chr03 813 62 168379 168378 C 752 0.00 1374 reject_low 1 ALIGNMENT 81 Y12-12l03.p1k chr08 818 902 134307 134391 F 85 98.82 1374 reject_low 33 ALIGNMENT 0 Y12-12l03.p1k chr14 705 851 96941 96940 F 147 0.00 1374 reject_low 8 ALIGNMENT 0 Y12-12l03.p1k chr03 62 521 124270 124269 F 460 0.00 1374 reject_low 15 ALIGNMENT 0 Y12-12l03.p1k chr06 556 62 143693 143692 C 495 0.00 1374 reject_low 24 ALIGNMENT 0 Y12-12l03.p1k chr02 851 706 259576 259575 C 146 0.00 1374 reject_low 10 ALIGNMENT 0 Y12-12l03.p1k chr08 62 525 134028 134027 F 464 0.00 1374 reject_low 33 ALIGNMENT 94 Y12-12l03.p1k chr03 705 465 151517 151767 C 241 81.74 1374 reject_low 9 ALIGNMENT 92 Y12-12l03.p1k chr02 704 465 226624 226874 C 240 81.25 1374 reject_low 11 ALIGNMENT 38 Y12-12l03.p1k chr16 557 711 810401 810565 F 155 77.42 1374 reject_low 22 ALIGNMENT 79 Y12-12l03.p1k chr03 902 814 168290 168378 C 89 96.63 1374 reject_low 1 ALIGNMENT 93 Y12-12l03.p1k chr02 705 465 259575 259826 C 241 81.33 1374 reject_low 10 ALIGNMENT 0 Y12-12l03.p1k chr13 693 851 463441 463440 F 159 0.00 1374 reject_low 16 ALIGNMENT 0 Y12-12l03.p1k chr16 705 851 856550 856549 F 147 0.00 1374 reject_low 29 ALIGNMENT 92 Y12-12l03.p1k chr07 704 465 931691 931941 C 240 81.25 1374 reject_low 12 ALIGNMENT 0 Y12-12l03.p1k chr02 464 62 265412 265411 C 403 0.00 1374 reject_low 6 ALIGNMENT 0 Y12-12l03.p1k chr03 464 62 151768 151767 C 403 0.00 1374 reject_low 9 ALIGNMENT 62 Y12-12l03.p1k chr09 532 704 197304 197485 F 173 81.50 1374 reject_low 20 ALIGNMENT 25 Y12-12l03.p1k chr16 557 596 850804 850844 F 40 92.50 1374 reject_low 25 ALIGNMENT 0 Y12-12l03.p1k chr16 851 705 850000 849999 C 147 0.00 1374 reject_low 32 ALIGNMENT 974 Y12-12l03.p1k chr12 1191 25 448357 449524 C 1167 96.06 1374 accept 0 ALIGNMENT 0 Y12-12l03.p1k chr06 464 62 158604 158603 C 403 0.00 1374 reject_low 13 ALIGNMENT 0 Y12-12l03.p1k chr09 705 851 197485 197484 F 147 0.00 1374 reject_low 20 ALIGNMENT 0 Y12-12l03.p1k chr07 851 705 931692 931691 C 147 0.00 1374 reject_low 12 ALIGNMENT 21 Y12-12l03.p1k chr08 599 671 134111 134182 F 73 78.08 1374 reject_low 33 ALIGNMENT 0 Y12-12l03.p1k chr06 544 62 137820 137819 C 483 0.00 1374 reject_low 21 ALIGNMENT 0 Y12-12l03.p1k chr03 851 706 151518 151517 C 146 0.00 1374 reject_low 9 ALIGNMENT 0 Y12-12l03.p1k chr11 705 851 302270 302269 F 147 0.00 1374 reject_low 18 ALIGNMENT 0 Y12-12l03.p1k chr04 819 62 645225 645224 C 758 0.00 1374 reject_low 2 ALIGNMENT 0 Y12-12l03.p1k chr13 62 517 463258 463257 F 456 0.00 1374 reject_low 16 ALIGNMENT 0 Y12-12l03.p1k chr15 596 597 117810 117819 C 0 0.00 1374 reject_low 31 ALIGNMENT 0 Y12-12l03.p1k chr15 851 705 117703 117702 C 147 0.00 1374 reject_low 31 ALIGNMENT 0 Y12-12l03.p1k chr10 682 851 354759 354758 F 170 0.00 1374 reject_low 19 ALIGNMENT 0 Y12-12l03.p1k chr05 62 824 250285 250284 F 763 0.00 1374 reject_low 3 ALIGNMENT 25 Y12-12l03.p1k chr16 557 596 856392 856432 F 40 92.50 1374 reject_low 26 ALIGNMENT 77 Y12-12l03.p1k chr03 547 705 142910 143078 F 159 84.91 1374 reject_low 17 ALIGNMENT 28 Y12-12l03.p1k chr16 557 597 850353 850392 F 41 95.12 1374 reject_low 28,29 ALIGNMENT 95 Y12-12l03.p1k chr14 465 704 96691 96941 F 240 81.67 1374 reject_low 8 ALIGNMENT 82 Y12-12l03.p1k chr04 704 522 802900 803092 C 183 84.15 1374 reject_low 27 ALIGNMENT 0 Y12-12l03.p1k chr06 851 599 158472 158471 C 253 0.00 1374 reject_low 13 ALIGNMENT 82 Y12-12l03.p1k chr03 522 704 124270 124462 F 183 84.15 1374 reject_low 15 ALIGNMENT 0 Y12-12l03.p1k chr16 851 706 844408 844407 C 146 0.00 1374 reject_low 30 ALIGNMENT 0 Y12-12l03.p1k chr03 705 851 124462 124461 F 147 0.00 1374 reject_low 15 ALIGNMENT 0 Y12-12l03.p1k chr03 706 851 143078 143077 F 146 0.00 1374 reject_low 17 ALIGNMENT 0 Y12-12l03.p1k chr02 851 705 226625 226624 C 147 0.00 1374 reject_low 11 ALIGNMENT 74 Y12-12l03.p1k chr04 903 824 802720 802798 C 80 98.75 1374 reject_low 27 ALIGNMENT 975 Y12-12l04.p1k chr05 1130 20 466508 467628 C 1111 96.58 1356 accept 0 ALIGNMENT 983 Y12-12l04.q1k chr05 33 1197 464422 465593 F 1165 95.88 1298 accept 0 ALIGNMENT 419 Y12-12l05.p1k chrm 303 797 40086 40580 F 495 99.39 1361 reject_low 1 ALIGNMENT 0 Y12-12l05.q1k chr10 177 814 7227 7226 F 638 0.00 1348 reject_low 3 ALIGNMENT 0 Y12-12l05.p1k chrm 853 611 50489 50488 C 243 0.00 1361 reject_low 12 ALIGNMENT 32 Y12-12l05.p1k chrm 605 682 55498 55568 F 78 85.90 1361|3,0 reject_low 13 ALIGNMENT 48 Y12-12l05.q1k chrm 981 807 34097 34265 C 175 80.57 1348 reject_low 5 ALIGNMENT 0 Y12-12l05.p1k chrm 62 540 55391 55390 F 479 0.00 1361 reject_low 13 ALIGNMENT 58 Y12-12l05.p1k chrm 652 489 2552 2718 C 164 82.93 1361 reject_low 6 ALIGNMENT 0 Y12-12l05.q1k chrm 875 62 77100 77099 C 814 0.00 1348 reject_low 8 ALIGNMENT 0 Y12-12l05.p1k chrm 62 302 40086 40085 F 241 0.00 1361 reject_low 1 ALIGNMENT 38 Y12-12l05.p1k chrm 660 581 68604 68686 C 80 87.50 1361 reject_low 10 ALIGNMENT 0 Y12-12l05.p1k chrm 798 853 40580 40579 F 56 0.00 1361 reject_low 1 ALIGNMENT 57 Y12-12l05.q1k chrm 833 971 2552 2698 F 139 82.01 1348 reject_low 4 ALIGNMENT 867 Y12-12l05.q1k chrm 1236 42 40042 41222 C 1195 96.23 1348 accept 0 ALIGNMENT 833 Y12-12l05.p1k chrm 19 1108 39801 40897 F 1090 97.61 1361 accept 0 ALIGNMENT 0 Y12-12l05.q1k chrm 876 62 12393 12392 C 815 0.00 1348 reject_low 9 ALIGNMENT 0 Y12-12l05.q1k chrm 806 62 34266 34265 C 745 0.00 1348 reject_low 5 ALIGNMENT 0 Y12-12l05.p1k chrm 571 62 50529 50528 C 510 0.00 1361 reject_low 12 ALIGNMENT 0 Y12-12l05.q1k chrm 62 832 2552 2551 F 771 0.00 1348 reject_low 4 ALIGNMENT 52 Y12-12l05.p1k chrm 662 591 50716 50788 C 72 93.06 1361 reject_low 7 ALIGNMENT 0 Y12-12l05.p1k chrm 62 544 12326 12325 F 483 0.00 1361 reject_low 11 ALIGNMENT 36 Y12-12l05.p1k chrm 545 609 12326 12392 F 65 86.15 1361 reject_low 11 ALIGNMENT 38 Y12-12l05.q1k chrm 930 876 77043 77099 C 55 90.91 1348 reject_low 8 ALIGNMENT 0 Y12-12l05.p1k chrm 610 853 12392 12391 F 244 0.00 1361 reject_low 11 ALIGNMENT 34 Y12-12l05.p1k chrm 541 610 55391 55463 F 70 85.71 1361|0,3 reject_low 13 ALIGNMENT 0 Y12-12l05.p1k chrm 608 607 55461 55500 F 0 0.00 1361 reject_low 13 ALIGNMENT 0 Y12-12l05.p1k chrm 853 653 2553 2552 C 201 0.00 1361 reject_low 6 ALIGNMENT 107 Y12-12l05.q1k chr09 42 176 7110 7244 F 135 99.26 1348 reject_low 2 ALIGNMENT 0 Y12-12l05.p1k chrm 580 62 68687 68686 C 519 0.00 1361 reject_low 10 ALIGNMENT 0 Y12-12l05.p1k chrm 853 661 68605 68604 C 193 0.00 1361 reject_low 10 ALIGNMENT 107 Y12-12l05.q1k chr10 42 176 7093 7227 F 135 99.26 1348 reject_low 3 ALIGNMENT 0 Y12-12l05.p1k chrm 853 663 50717 50716 C 191 0.00 1361 reject_low 7 ALIGNMENT 0 Y12-12l05.p1k chrm 488 62 2719 2718 C 427 0.00 1361 reject_low 6 ALIGNMENT 0 Y12-12l05.q1k chr09 177 814 7244 7243 F 638 0.00 1348 reject_low 2 ALIGNMENT 0 Y12-12l05.p1k chrm 683 853 55568 55567 F 171 0.00 1361 reject_low 13 ALIGNMENT 24 Y12-12l05.p1k chrm 610 572 50488 50528 C 39 92.31 1361 reject_low 12 ALIGNMENT 0 Y12-12l05.p1k chrm 590 62 50789 50788 C 529 0.00 1361 reject_low 7 ALIGNMENT 36 Y12-12l05.q1k chrm 941 877 12326 12392 C 65 86.15 1348 reject_low 9 ALIGNMENT 1041 Y12-12l06.q1k chr13 1207 32 772657 773840 C 1176 96.68 1303 accept 0 ALIGNMENT 857 Y12-12l06.p1k chr13 18 1060 770135 771192 F 1043 95.21 1314 accept 0 ALIGNMENT 989 Y12-12l09.p1k chr07 1159 20 640240 641400 C 1140 96.40 1409 accept 0 ALIGNMENT 948 Y12-12l09.q1k chr07 32 1144 635680 636800 F 1113 96.05 1382 accept 0 ALIGNMENT 80 Y12-12l10.q1k chr14 1004 885 96817 96938 C 120 92.50 1334 reject_low 20 ALIGNMENT 62 Y12-12l10.p1k chr16 611 354 442749 443004 C 258 77.13 1419 reject_low 1 ALIGNMENT 0 Y12-12l10.q1k chr10 62 884 483552 483551 F 823 0.00 1334 reject_low 12 ALIGNMENT 90 Y12-12l10.q1k chr16 1046 885 856378 856547 C 162 89.51 1334 reject_low 10 ALIGNMENT 0 Y12-12l10.q1k chr05 884 62 498414 498413 C 823 0.00 1334 reject_low 5 ALIGNMENT 80 Y12-12l10.q1k chr16 885 1004 560481 560602 F 120 92.50 1334 reject_low 22 ALIGNMENT 0 Y12-12l10.q1k chr14 884 62 96939 96938 C 823 0.00 1334 reject_low 20 ALIGNMENT 0 Y12-12l10.q1k chr08 884 62 543939 543938 C 823 0.00 1334 reject_low 16 ALIGNMENT 90 Y12-12l10.q1k chr16 1046 885 850790 850959 C 162 89.51 1334 reject_low 9 ALIGNMENT 80 Y12-12l10.q1k chr11 1004 885 457990 458111 C 120 92.50 1334 reject_low 17 ALIGNMENT 0 Y12-12l10.q1k chr03 884 62 124460 124459 C 823 0.00 1334 reject_low 15 ALIGNMENT 90 Y12-12l10.q1k chr05 1046 885 498244 498413 C 162 89.51 1334 reject_low 5 ALIGNMENT 80 Y12-12l10.q1k chr15 885 1004 594824 594945 F 120 92.50 1334 reject_low 21 ALIGNMENT 87 Y12-12l10.q1k chr10 885 1046 483552 483721 F 162 88.89 1334 reject_low 12 ALIGNMENT 83 Y12-12l10.q1k chr07 885 1004 401965 402086 F 120 93.33 1334 reject_low 13 ALIGNMENT 83 Y12-12l10.q1k chr07 885 1004 931694 931815 F 120 93.33 1334 reject_low 14 ALIGNMENT 90 Y12-12l10.q1k chr13 1046 885 372861 373030 C 162 89.51 1334 reject_low 7 ALIGNMENT 80 Y12-12l10.q1k chr08 1004 885 543817 543938 C 120 92.50 1334 reject_low 16 ALIGNMENT 87 Y12-12l10.q1k chr10 885 1046 472380 472549 F 162 88.89 1334 reject_low 11 ALIGNMENT 0 Y12-12l10.q1k chr04 62 884 1095765 1095764 F 823 0.00 1334 reject_low 4 ALIGNMENT 80 Y12-12l10.q1k chr13 885 1004 189755 189876 F 120 92.50 1334 reject_low 19 ALIGNMENT 0 Y12-12l10.p1k chr16 353 62 443005 443004 C 292 0.00 1419 reject_low 1 ALIGNMENT 0 Y12-12l10.q1k chr16 62 884 560481 560480 F 823 0.00 1334 reject_low 22 ALIGNMENT 0 Y12-12l10.q1k chr16 884 62 856548 856547 C 823 0.00 1334 reject_low 10 ALIGNMENT 80 Y12-12l10.q1k chr03 1004 885 124338 124459 C 120 92.50 1334 reject_low 15 ALIGNMENT 0 Y12-12l10.q1k chr16 62 884 844411 844410 F 823 0.00 1334 reject_low 8 ALIGNMENT 0 Y12-12l10.q1k chr15 62 879 117699 117698 F 818 0.00 1334 reject_low 3 ALIGNMENT 0 Y12-12l10.q1k chr07 62 884 931694 931693 F 823 0.00 1334 reject_low 14 ALIGNMENT 0 Y12-12l10.q1k chr16 884 62 850960 850959 C 823 0.00 1334 reject_low 9 ALIGNMENT 80 Y12-12l10.q1k chr13 885 1004 184173 184294 F 120 92.50 1334 reject_low 18 ALIGNMENT 0 Y12-12l10.q1k chr13 62 884 184173 184172 F 823 0.00 1334 reject_low 18 ALIGNMENT 824 Y12-12l10.q1k chr10 880 34 424729 425575 C 847 99.76 1334 accept 0 ALIGNMENT 0 Y12-12l10.q1k chr12 884 62 215416 215415 C 823 0.00 1334 reject_low 6 ALIGNMENT 0 Y12-12l10.q1k chr10 62 884 472380 472379 F 823 0.00 1334 reject_low 11 ALIGNMENT 90 Y12-12l10.q1k chr12 1046 885 215246 215415 C 162 89.51 1334 reject_low 6 ALIGNMENT 0 Y12-12l10.q1k chr11 884 62 458112 458111 C 823 0.00 1334 reject_low 17 ALIGNMENT 0 Y12-12l10.q1k chr13 884 62 373031 373030 C 823 0.00 1334 reject_low 7 ALIGNMENT 0 Y12-12l10.q1k chr07 62 884 401965 401964 F 823 0.00 1334 reject_low 13 ALIGNMENT 993 Y12-12l10.p1k chr10 24 1224 421613 422829 F 1201 96.34 1419 accept 0 ALIGNMENT 0 Y12-12l10.q1k chr15 62 884 594824 594823 F 823 0.00 1334 reject_low 21 ALIGNMENT 91 Y12-12l10.q1k chr15 880 1046 117699 117874 F 167 89.22 1334 reject_low 3 ALIGNMENT 0 Y12-12l10.p1k chr16 892 612 442750 442749 C 281 0.00 1419 reject_low 1 ALIGNMENT 90 Y12-12l10.q1k chr04 885 1046 1095765 1095934 F 162 89.51 1334 reject_low 4 ALIGNMENT 91 Y12-12l10.q1k chr13 1046 880 378449 378624 C 167 89.22 1334 reject_low 2 ALIGNMENT 0 Y12-12l10.q1k chr13 879 62 378625 378624 C 818 0.00 1334 reject_low 2 ALIGNMENT 90 Y12-12l10.q1k chr16 885 1046 844411 844580 F 162 89.51 1334 reject_low 8 ALIGNMENT 0 Y12-12l10.q1k chr13 62 884 189755 189754 F 823 0.00 1334 reject_low 19 ALIGNMENT 87 Y12-12l11.q1k chr06 893 786 31622 31729 C 108 95.37 1268 reject_low 3 ALIGNMENT 960 Y12-12l11.q1k chr12 33 1200 458561 459732 F 1168 95.98 1268 accept 0 ALIGNMENT 907 Y12-12l11.p1k chr12 1043 22 453730 454774 C 1022 97.26 1361 reject_low 2 ALIGNMENT 960 Y12-12l11.q1k chr12 33 1200 467698 468869 F 1168 95.98 1268 reject_low 1 ALIGNMENT 907 Y12-12l11.p1k chr12 1043 22 462867 463911 C 1022 97.26 1361 accept 0 ALIGNMENT 0 Y12-12l11.q1k chr06 785 62 31730 31729 C 724 0.00 1268 reject_low 3 ALIGNMENT 1013 Y12-12l12.p1k chr08 20 1155 217831 218982 F 1136 97.01 1388 accept 0 ALIGNMENT 1022 Y12-12l12.q1k chr08 1252 33 222764 223992 C 1220 95.25 1262 accept 0 ALIGNMENT 636 Y12-12l13.p1k chr12 1110 174 655053 655998 C 937 91.14 1369 reject_low 15 ALIGNMENT 1006 Y12-12l13.q1k chr12 37 1166 651393 652526 F 1130 96.99 1317 reject_low 15 ALIGNMENT 1007 Y12-12l13.q1k chr12 1196 37 480161 481328 C 1160 96.38 1317 reject_low 9 ALIGNMENT 661 Y12-12l13.p1k chr13 1110 18 188393 189494 C 1093 88.75 1369 reject_low 12 ALIGNMENT 0 Y12-12l13.q1k chr08 882 391 548720 548719 C 492 0.00 1317 reject_low 31 ALIGNMENT 996 Y12-12l13.q1k chr02 37 1196 260141 261308 F 1160 96.12 1317 ambiguous_trans 3 ALIGNMENT 1007 Y12-12l13.q1k chr16 37 1196 57022 58189 F 1160 96.38 1317 reject_low 11 ALIGNMENT 700 Y12-12l13.p1k chr04 1110 18 1210919 1212020 C 1093 89.84 1369 reject_low 7 ALIGNMENT 0 Y12-12l13.p1k chr04 62 265 987558 987557 F 204 0.00 1369 reject_low 30 ALIGNMENT 0 Y12-12l13.p1k chr12 173 62 655999 655998 C 112 0.00 1369 reject_low 15 ALIGNMENT 1005 Y12-12l13.q1k chr13 37 1196 184735 185902 F 1160 96.38 1317 reject_low 12 ALIGNMENT 676 Y12-12l13.p1k chr05 18 1110 443987 445088 F 1093 89.20 1369 reject_low 8 ALIGNMENT 1005 Y12-12l13.q1k chr04 37 1196 1096333 1097500 F 1160 96.38 1317 reject_low 20 ALIGNMENT 844 Y12-12l13.p1k chr07 18 1110 817987 819088 F 1093 94.24 1369 ambiguous_trans 2 ALIGNMENT 1004 Y12-12l13.q1k chr16 1196 37 854812 855979 C 1160 96.29 1317 reject_low 14 ALIGNMENT 0 Y12-12l13.q1k chr08 274 62 548721 548720 C 213 0.00 1317 reject_low 24 ALIGNMENT 676 Y12-12l13.p1k chr15 1110 18 121931 123032 C 1093 89.20 1369 reject_low 27 ALIGNMENT 1007 Y12-12l13.q1k chr04 1166 37 649714 650847 C 1130 97.08 1317 reject_low 22 ALIGNMENT 770 Y12-12l13.q1k chr08 1196 275 547791 548720 C 922 95.55 1317 reject_low 24 ALIGNMENT 1007 Y12-12l13.q1k chr10 37 1196 472948 474115 F 1160 96.38 1317 ambiguous_trans 1 ALIGNMENT 937 Y12-12l13.p1k chr07 1110 18 539993 541094 C 1093 97.07 1369 ambiguous_trans 0 ALIGNMENT 1005 Y12-12l13.q1k chr07 1196 37 821579 822746 C 1160 96.47 1317 ambiguous_trans 2 ALIGNMENT 919 Y12-12l13.p1k chr14 18 1110 97199 98300 F 1093 96.52 1369 reject_low 25 ALIGNMENT 1007 Y12-12l13.q1k chr07 1166 37 566064 567197 C 1130 97.08 1317 reject_low 23 ALIGNMENT 1007 Y12-12l13.q1k chr12 37 1196 593714 594881 F 1160 96.38 1317 reject_low 19 ALIGNMENT 342 Y12-12l13.q1k chr08 390 37 548719 549072 C 354 99.72 1317 reject_low 31 ALIGNMENT 1002 Y12-12l13.q1k chr13 1196 37 376883 378050 C 1160 96.38 1317 ambiguous_trans 5 ALIGNMENT 676 Y12-12l13.p1k chr13 1110 18 200560 201661 C 1093 89.20 1369 reject_low 10 ALIGNMENT 676 Y12-12l13.p1k chr12 18 1110 476569 477670 F 1093 89.20 1369 reject_low 9 ALIGNMENT 1007 Y12-12l13.q1k chr07 37 1196 536335 537502 F 1160 96.38 1317 ambiguous_trans 0 ALIGNMENT 946 Y12-12l13.p1k chr02 1110 18 225265 226366 C 1093 97.35 1369 reject_low 17 ALIGNMENT 841 Y12-12l13.p1k chr02 1110 18 263802 264903 C 1093 94.14 1369 ambiguous_trans 3 ALIGNMENT 1007 Y12-12l13.q1k chr04 37 1196 1207261 1208428 F 1160 96.38 1317 reject_low 7 ALIGNMENT 1002 Y12-12l13.q1k chr10 37 1196 478532 479699 F 1160 96.29 1317 reject_low 21 ALIGNMENT 946 Y12-12l13.p1k chr13 18 1110 357593 358694 F 1093 97.35 1369 reject_low 18 ALIGNMENT 928 Y12-12l13.p1k chr10 1110 18 482190 483291 C 1093 96.80 1369 ambiguous_trans 1 ALIGNMENT 661 Y12-12l13.p1k chr16 1110 18 848640 849741 C 1093 88.75 1369 reject_low 13 ALIGNMENT 1002 Y12-12l13.q1k chr12 1196 37 219268 220435 C 1160 96.38 1317 ambiguous_trans_ua 6 ALIGNMENT 844 Y12-12l13.p1k chr15 1110 18 599044 600145 C 1093 94.24 1369 reject_low 26 ALIGNMENT 1002 Y12-12l13.q1k chr05 1196 37 496678 497845 C 1160 96.38 1317 ambiguous_trans 4 ALIGNMENT 812 Y12-12l13.p1k chr13 18 1094 373291 374374 F 1077 93.69 1369 ambiguous_trans 5 ALIGNMENT 999 Y12-12l13.q1k chr16 37 1196 844979 846146 F 1160 96.21 1317 reject_low 13 ALIGNMENT 638 Y12-12l13.p1k chr10 1088 18 476631 477707 C 1071 88.42 1369 reject_low 29 ALIGNMENT 668 Y12-12l13.p1k chr01 18 1088 160833 161909 F 1071 89.36 1369 reject_low 28 ALIGNMENT 590 Y12-12l13.p1k chr16 18 1088 805232 806308 F 1071 86.93 1369 reject_low 16 ALIGNMENT 599 Y12-12l13.p1k chr04 266 1110 987558 988411 F 845 92.19 1369 reject_low 30 ALIGNMENT 0 Y12-12l13.q1k chr02 62 87 221658 221657 F 26 0.00 1317 reject_low 17 ALIGNMENT 676 Y12-12l13.p1k chr16 1110 18 60680 61781 C 1093 89.20 1369 reject_low 11 ALIGNMENT 522 Y12-12l13.q1k chr13 1060 45 361328 362344 C 1016 84.35 1317 reject_low 18 ALIGNMENT 809 Y12-12l13.p1k chr12 18 1094 215676 216759 F 1077 93.59 1369 ambiguous_trans_ua 6 ALIGNMENT 650 Y12-12l13.p1k chr16 18 1088 851220 852296 F 1071 88.80 1369 reject_low 14 ALIGNMENT 1007 Y12-12l13.q1k chr05 1196 37 447579 448746 C 1160 96.38 1317 reject_low 8 ALIGNMENT 1007 Y12-12l13.q1k chr13 37 1196 196902 198069 F 1160 96.38 1317 reject_low 10 ALIGNMENT 812 Y12-12l13.p1k chr05 18 1094 493086 494169 F 1077 93.69 1369 ambiguous_trans 4 ALIGNMENT 570 Y12-12l13.q1k chr02 88 1196 221658 222774 F 1109 84.58 1317 reject_low 17 ALIGNMENT 1002 Y12-12l13.q1k chr16 1196 37 808824 809991 C 1160 96.38 1317 reject_low 16 ALIGNMENT 973 Y12-12l14.q1k chr12 1167 38 535812 536956 C 1130 95.84 1284 accept 0 ALIGNMENT 964 Y12-12l14.p1k chr12 24 1080 532877 533943 F 1057 98.11 1337 accept 0 ALIGNMENT 884 Y12-12l15.p1k chr04 23 1003 206746 207738 F 981 97.76 1285 accept 0 ALIGNMENT 952 Y12-12l15.q1k chr04 1090 37 209658 210721 C 1054 97.53 1267 accept 0 ALIGNMENT 0 Y12-12l16.q1k chr02 432 935 226956 226955 F 504 0.00 1316 reject_low 1 ALIGNMENT 57 Y12-12l16.q1k chr07 296 407 817278 817387 F 112 86.61 1316 reject_low 33 ALIGNMENT 0 Y12-12l16.q1k chr02 824 935 226934 226933 F 112 0.00 1316 reject_low 25 ALIGNMENT 0 Y12-12l16.q1k chr15 411 935 600714 600713 F 525 0.00 1316 reject_low 10 ALIGNMENT 0 Y12-12l16.q1k chr11 753 62 457874 457873 C 692 0.00 1316 reject_low 29 ALIGNMENT 0 Y12-12l16.q1k chr01 698 431 160385 165826 C 268 0.00 1316 reject_low 36 ALIGNMENT 285 Y12-12l16.q1k chr02 99 410 259576 259887 F 312 99.36 1316 reject_low 32 ALIGNMENT 0 Y12-12l16.q1k chr13 698 62 362732 362731 C 637 0.00 1316 reject_low 28 ALIGNMENT 38 Y12-12l16.q1k chr13 823 699 362607 362731 C 125 79.20 1316 reject_low 28 ALIGNMENT 0 Y12-12l16.q1k chr15 62 98 594821 594820 F 37 0.00 1316 reject_low 31 ALIGNMENT 0 Y12-12l16.q1k chr07 408 935 817387 817386 F 528 0.00 1316 reject_low 33 ALIGNMENT 43 Y12-12l16.q1k chr14 838 699 96616 96755 C 140 79.29 1316 reject_low 15 ALIGNMENT 288 Y12-12l16.q1k chr07 410 99 823000 823311 C 312 99.68 1316 reject_low 30 ALIGNMENT 0 Y12-12l16.q1k chr14 935 839 96617 96616 C 97 0.00 1316 reject_low 15 ALIGNMENT 0 Y12-12l16.q1k chr11 935 431 517096 517095 C 505 0.00 1316 reject_low 2 ALIGNMENT 0 Y12-12l16.q1k chr02 62 98 226624 226623 F 37 0.00 1316 reject_low 1 ALIGNMENT 285 Y12-12l16.q1k chr02 99 410 265161 265472 F 312 99.36 1316 reject_low 11 ALIGNMENT 0 Y12-12l16.q1k chr07 62 98 931691 931690 F 37 0.00 1316 reject_low 7 ALIGNMENT 0 Y12-12l16.q1k chr07 62 745 817314 817313 F 684 0.00 1316 reject_low 34 ALIGNMENT 0 Y12-12l16.q1k chr14 935 839 102199 102198 C 97 0.00 1316 reject_low 17 ALIGNMENT 0 Y12-12l16.q1k chr01 98 62 160576 160575 C 37 0.00 1316 reject_low 14 ALIGNMENT 0 Y12-12l16.q1k chr07 431 935 535546 535545 F 505 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-12l16.q1k chr13 935 824 357026 357025 C 112 0.00 1316 reject_low 19 ALIGNMENT 0 Y12-12l16.q1k chr16 62 698 560664 560663 F 637 0.00 1316 reject_low 18 ALIGNMENT 0 Y12-12l16.q1k chr11 935 824 517117 517116 C 112 0.00 1316 reject_low 27 ALIGNMENT 214 Y12-12l16.q1k chr01 430 98 165827 166164 C 333 90.39 1316 reject_low 36 ALIGNMENT 0 Y12-12l16.q1k chr15 62 98 600403 600402 F 37 0.00 1316 reject_low 10 ALIGNMENT 306 Y12-12l16.q1k chr14 430 99 96610 96941 C 332 99.40 1316 reject_low 5 ALIGNMENT 0 Y12-12l16.q1k chr13 698 431 357150 362585 C 268 0.00 1316 reject_low 19 ALIGNMENT 0 Y12-12l16.q1k chr15 824 935 595131 595130 F 112 0.00 1316 reject_low 37 ALIGNMENT 41 Y12-12l16.q1k chr07 699 823 931877 932001 F 125 80.00 1316 reject_low 22 ALIGNMENT 0 Y12-12l16.q1k chr14 698 431 96756 102191 C 268 0.00 1316 reject_low 15 ALIGNMENT 41 Y12-12l16.q1k chr07 823 699 817419 817543 C 125 80.00 1316 reject_low 30 ALIGNMENT 0 Y12-12l16.q1k chr10 835 935 472704 472703 F 101 0.00 1316 reject_low 20 ALIGNMENT 0 Y12-12l16.q1k chr02 431 698 221374 226809 F 268 0.00 1316 reject_low 25 ALIGNMENT 0 Y12-12l16.q1k chr13 935 431 357005 357004 C 505 0.00 1316 reject_low 3 ALIGNMENT 0 Y12-12l16.q1k chr07 98 62 817730 817729 C 37 0.00 1316 reject_low 9 ALIGNMENT 0 Y12-12l16.q1k chr01 935 432 160239 160238 C 504 0.00 1316 reject_low 14 ALIGNMENT 0 Y12-12l16.q1k chr14 935 431 96611 96610 C 505 0.00 1316 reject_low 5 ALIGNMENT 294 Y12-12l16.q1k chr11 430 99 457783 458114 C 332 98.19 1316 reject_low 8 ALIGNMENT 0 Y12-12l16.q1k chr10 62 97 472376 472375 F 36 0.00 1316 reject_low 13 ALIGNMENT 0 Y12-12l16.q1k chr14 62 98 102549 102548 F 37 0.00 1316 reject_low 35 ALIGNMENT 577 Y12-12l16.q1k chr12 431 1269 963131 963958 F 839 91.66 1316 reject_bad_break 0 ALIGNMENT 36 Y12-12l16.q1k chr11 838 754 457789 457873 C 85 83.53 1316 reject_low 29 ALIGNMENT 0 Y12-12l16.q1k chr13 935 824 362608 362607 C 112 0.00 1316 reject_low 28 ALIGNMENT 0 Y12-12l16.q1k chr02 62 98 259576 259575 F 37 0.00 1316 reject_low 32 ALIGNMENT 308 Y12-12l16.q1k chr14 430 97 102192 102525 C 334 99.40 1316 reject_low 15 ALIGNMENT 0 Y12-12l16.q1k chr07 431 935 932022 932021 F 505 0.00 1316 reject_low 7 ALIGNMENT 306 Y12-12l16.q1k chr07 99 430 535215 535546 F 332 99.40 1316 reject_low 4 ALIGNMENT 0 Y12-12l16.q1k chr12 99 430 963136 963130 F 332 0.00 1316 reject_bad_break 0 ALIGNMENT 0 Y12-12l16.q1k chr15 824 935 600713 600712 F 112 0.00 1316 reject_low 31 ALIGNMENT 285 Y12-12l16.q1k chr08 410 99 543630 543941 C 312 99.36 1316 reject_low 12 ALIGNMENT 0 Y12-12l16.q1k chr07 62 98 535215 535214 F 37 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-12l16.q1k chr16 431 935 560809 560808 F 505 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-12l16.q1k chr07 698 62 823126 823125 C 637 0.00 1316 reject_low 21 ALIGNMENT 0 Y12-12l16.q1k chr08 98 62 543942 543941 C 37 0.00 1316 reject_low 12 ALIGNMENT 0 Y12-12l16.q1k chr07 824 935 535525 535524 F 112 0.00 1316 reject_low 26 ALIGNMENT 38 Y12-12l16.q1k chr11 823 699 517116 517240 C 125 79.20 1316 reject_low 27 ALIGNMENT 41 Y12-12l16.q1k chr07 823 699 823001 823125 C 125 80.00 1316 reject_low 21 ALIGNMENT 0 Y12-12l16.q1k chr07 935 824 817420 817419 C 112 0.00 1316 reject_low 30 ALIGNMENT 0 Y12-12l16.q1k chr11 98 62 458115 458114 C 37 0.00 1316 reject_low 8 ALIGNMENT 38 Y12-12l16.q1k chr02 699 823 265347 265471 F 125 79.20 1316 reject_low 32 ALIGNMENT 0 Y12-12l16.q1k chr14 129 935 102578 102577 F 807 0.00 1316 reject_low 35 ALIGNMENT 0 Y12-12l16.q1k chr10 62 698 472569 472568 F 637 0.00 1316 reject_low 20 ALIGNMENT 38 Y12-12l16.q1k chr07 699 823 535401 535525 F 125 79.20 1316 reject_low 26 ALIGNMENT 0 Y12-12l16.q1k chr02 411 698 259888 265346 F 288 0.00 1316 reject_low 32 ALIGNMENT 29 Y12-12l16.q1k chr14 99 128 102549 102578 F 30 100.00 1316 reject_low 35 ALIGNMENT 41 Y12-12l16.q1k chr15 699 823 595007 595131 F 125 80.00 1316 reject_low 37 ALIGNMENT 0 Y12-12l16.q1k chr07 62 295 817278 817277 F 234 0.00 1316 reject_low 33 ALIGNMENT 71 Y12-12l16.q1k chr15 229 346 594642 594759 F 118 89.83 1316 reject_low 37 ALIGNMENT 0 Y12-12l16.q1k chr11 935 431 457784 457783 C 505 0.00 1316 reject_low 8 ALIGNMENT 0 Y12-12l16.q1k chr08 698 62 543756 543755 C 637 0.00 1316 reject_low 23 ALIGNMENT 0 Y12-12l16.q1k chr07 62 698 535401 535400 F 637 0.00 1316 reject_low 26 ALIGNMENT 309 Y12-12l16.q1k chr13 430 99 362586 362917 C 332 99.70 1316 reject_low 19 ALIGNMENT 288 Y12-12l16.q1k chr15 99 410 600403 600714 F 312 99.68 1316 reject_low 10 ALIGNMENT 0 Y12-12l16.q1k chr11 935 839 457790 457789 C 97 0.00 1316 reject_low 29 ALIGNMENT 0 Y12-12l16.q1k chr08 935 411 543631 543630 C 525 0.00 1316 reject_low 12 ALIGNMENT 0 Y12-12l16.q1k chr07 698 411 817544 822999 C 288 0.00 1316 reject_low 30 ALIGNMENT 0 Y12-12l16.q1k chr02 411 935 265472 265471 F 525 0.00 1316 reject_low 11 ALIGNMENT 43 Y12-12l16.q1k chr14 838 699 102198 102337 C 140 79.29 1316 reject_low 17 ALIGNMENT 43 Y12-12l16.q1k chr16 699 838 560664 560803 F 140 79.29 1316 reject_low 18 ALIGNMENT 20 Y12-12l16.q1k chr07 746 821 817314 817387 F 76 80.26 1316 reject_low 34 ALIGNMENT 0 Y12-12l16.q1k chr10 431 935 472714 472713 F 505 0.00 1316 reject_low 13 ALIGNMENT 42 Y12-12l16.q1k chr02 712 823 259775 259886 F 112 81.25 1316 reject_low 24 ALIGNMENT 214 Y12-12l16.q1k chr01 431 99 160238 160575 C 333 90.39 1316 reject_low 14 ALIGNMENT 0 Y12-12l16.q1k chr15 62 228 594642 594641 F 167 0.00 1316 reject_low 37 ALIGNMENT 0 Y12-12l16.q1k chr07 98 62 823312 823311 C 37 0.00 1316 reject_low 30 ALIGNMENT 0 Y12-12l16.q1k chr02 824 935 265471 265470 F 112 0.00 1316 reject_low 32 ALIGNMENT 0 Y12-12l16.q1k chr16 839 935 560803 560802 F 97 0.00 1316 reject_low 18 ALIGNMENT 288 Y12-12l16.q1k chr15 99 410 594821 595132 F 312 99.68 1316 reject_low 31 ALIGNMENT 0 Y12-12l16.q1k chr14 96 62 102526 102525 C 35 0.00 1316 reject_low 15 ALIGNMENT 288 Y12-12l16.q1k chr07 410 99 817418 817729 C 312 99.68 1316 reject_low 9 ALIGNMENT 0 Y12-12l16.q1k chr02 824 935 259886 259885 F 112 0.00 1316 reject_low 24 ALIGNMENT 935 Y12-12l16.p1k chr12 1083 20 968141 969222 C 1064 97.37 1339 reject_bad_break 0 ALIGNMENT 0 Y12-12l16.q1k chr01 698 62 165973 165972 C 637 0.00 1316 reject_low 16 ALIGNMENT 296 Y12-12l16.q1k chr02 99 430 221040 221373 F 332 98.49 1316 reject_low 25 ALIGNMENT 0 Y12-12l16.q1k chr07 822 935 817387 817386 F 114 0.00 1316 reject_low 34 ALIGNMENT 0 Y12-12l16.q1k chr07 62 698 931877 931876 F 637 0.00 1316 reject_low 22 ALIGNMENT 42 Y12-12l16.q1k chr10 699 834 472569 472704 F 136 79.41 1316 reject_low 20 ALIGNMENT 0 Y12-12l16.q1k chr07 824 935 932001 932000 F 112 0.00 1316 reject_low 22 ALIGNMENT 0 Y12-12l16.q1k chr01 935 839 165834 165833 C 97 0.00 1316 reject_low 16 ALIGNMENT 0 Y12-12l16.q1k chr02 62 98 265161 265160 F 37 0.00 1316 reject_low 11 ALIGNMENT 0 Y12-12l16.q1k chr07 935 824 823002 823001 C 112 0.00 1316 reject_low 21 ALIGNMENT 0 Y12-12l16.q1k chr01 935 839 160246 160245 C 97 0.00 1316 reject_low 36 ALIGNMENT 0 Y12-12l16.q1k chr15 411 698 595133 600588 F 288 0.00 1316 reject_low 31 ALIGNMENT 302 Y12-12l16.q1k chr16 98 430 560477 560809 F 333 98.80 1316 reject_low 6 ALIGNMENT 0 Y12-12l16.q1k chr16 62 97 560477 560476 F 36 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-12l16.q1k chr02 62 98 221040 221039 F 37 0.00 1316 reject_low 25 ALIGNMENT 0 Y12-12l16.q1k chr07 935 411 817419 817418 C 525 0.00 1316 reject_low 9 ALIGNMENT 41 Y12-12l16.q1k chr08 823 699 543631 543755 C 125 80.00 1316 reject_low 23 ALIGNMENT 0 Y12-12l16.q1k chr08 935 824 543632 543631 C 112 0.00 1316 reject_low 23 ALIGNMENT 43 Y12-12l16.q1k chr01 838 699 160245 160384 C 140 79.29 1316 reject_low 36 ALIGNMENT 0 Y12-12l16.q1k chr14 98 62 96942 96941 C 37 0.00 1316 reject_low 5 ALIGNMENT 297 Y12-12l16.q1k chr07 99 430 931691 932022 F 332 98.49 1316 reject_low 7 ALIGNMENT 279 Y12-12l16.q1k chr10 98 430 472376 472714 F 333 96.70 1316 reject_low 13 ALIGNMENT 0 Y12-12l16.q1k chr02 62 711 259775 259774 F 650 0.00 1316 reject_low 24 ALIGNMENT 38 Y12-12l16.q1k chr02 699 823 226810 226934 F 125 79.20 1316 reject_low 25 ALIGNMENT 0 Y12-12l16.q1k chr01 97 62 166165 166164 C 36 0.00 1316 reject_low 36 ALIGNMENT 0 Y12-12l16.q1k chr13 98 62 362918 362917 C 37 0.00 1316 reject_low 19 ALIGNMENT 0 Y12-12l16.q1k chr14 698 62 102338 102337 C 637 0.00 1316 reject_low 17 ALIGNMENT 0 Y12-12l16.q1k chr13 98 62 357336 357335 C 37 0.00 1316 reject_low 3 ALIGNMENT 58 Y12-12l16.q1k chr12 32 98 963068 963135 F 67 97.01 1316 reject_bad_break 0 ALIGNMENT 0 Y12-12l16.q1k chr11 97 62 517428 517427 C 36 0.00 1316 reject_low 2 ALIGNMENT 41 Y12-12l16.q1k chr15 699 823 600589 600713 F 125 80.00 1316 reject_low 31 ALIGNMENT 309 Y12-12l16.q1k chr13 430 99 357004 357335 C 332 99.70 1316 reject_low 3 ALIGNMENT 311 Y12-12l16.q1k chr02 99 431 226624 226956 F 333 99.70 1316 reject_low 1 ALIGNMENT 0 Y12-12l16.q1k chr11 698 62 517241 517240 C 637 0.00 1316 reject_low 27 ALIGNMENT 311 Y12-12l16.q1k chr11 430 98 517095 517427 C 333 99.70 1316 reject_low 2 ALIGNMENT 38 Y12-12l16.q1k chr13 823 699 357025 357149 C 125 79.20 1316 reject_low 19 ALIGNMENT 0 Y12-12l16.q1k chr15 347 698 594760 595006 F 352 0.00 1316 reject_low 37 ALIGNMENT 43 Y12-12l16.q1k chr01 838 699 165833 165972 C 140 79.29 1316 reject_low 16 ALIGNMENT 915 Y12-12l17.p1k chr12 19 1087 454791 455876 F 1069 96.73 1354 accept 0 ALIGNMENT 980 Y12-12l17.q1k chr12 1180 33 457716 458862 C 1148 96.43 1373 reject_low 2 ALIGNMENT 915 Y12-12l17.p1k chr12 19 1087 463928 465013 F 1069 96.73 1354 accept 1 ALIGNMENT 999 Y12-12l17.q1k chr12 1299 33 466738 467999 C 1267 94.55 1373 accept 0,1 ALIGNMENT 817 Y12-12l19.p1k chr16 80 1161 796886 797980 F 1082 93.07 1373 accept 0 ALIGNMENT 928 Y12-12l19.q1k chr16 1119 36 800245 801331 C 1084 96.03 1284 accept 0 ALIGNMENT 674 Y12-12l21.q1k chr16 1222 32 16049 17253 C 1191 86.23 1258 reject_low 1 ALIGNMENT 864 Y12-12l21.p1k chr16 21 1111 12640 13763 F 1091 94.96 1318 reject_low 1 ALIGNMENT 370 Y12-12l21.p1k chr13 452 21 917887 918324 C 432 96.99 1318 reject_low 2 ALIGNMENT 837 Y12-12l21.p1k chr15 1111 24 1077372 1078498 C 1088 94.21 1318 accept 0 ALIGNMENT 1009 Y12-12l21.q1k chr15 31 1222 1073835 1075025 F 1192 95.30 1258 accept 0 ALIGNMENT 0 Y12-12l21.p1k chr13 794 453 917888 917887 C 342 0.00 1318 reject_low 2 ALIGNMENT 986 Y12-12l22.p1k chr15 1158 23 828030 829183 C 1136 97.10 1298 accept 0 ALIGNMENT 932 Y12-12l22.q1k chr15 32 1182 824068 825230 F 1151 94.87 1229 accept 0 ALIGNMENT 946 Y12-12l23.p1k chr12 20 1070 460719 461779 F 1051 97.53 1378 accept 1 ALIGNMENT 968 Y12-12l23.q1k chr12 1176 32 463405 464552 C 1145 95.55 1209 accept 1 ALIGNMENT 0 Y12-12l23.p1k chr12 62 222 489754 489753 F 161 0.00 1378 reject_low 2 ALIGNMENT 968 Y12-12l23.q1k chr12 1176 32 454268 455415 C 1145 95.55 1209 accept 0 ALIGNMENT 946 Y12-12l23.p1k chr12 20 1070 451582 452642 F 1051 97.53 1378 accept 0 ALIGNMENT 724 Y12-12l23.p1k chr12 223 1013 489754 490543 F 791 97.60 1378 reject_low 2 ALIGNMENT 0 Y12-12l24.q1k chr02 664 62 406034 406033 C 603 0.00 1226 reject_low 2 ALIGNMENT 78 Y12-12l24.q1k chr13 744 665 463553 463632 C 80 100.00 1226 reject_low 12 ALIGNMENT 78 Y12-12l24.q1k chr10 744 665 204652 204731 C 80 100.00 1226 reject_low 10 ALIGNMENT 0 Y12-12l24.q1k chr10 664 62 204732 204731 C 603 0.00 1226 reject_low 10 ALIGNMENT 0 Y12-12l24.q1k chr13 664 62 463633 463632 C 603 0.00 1226 reject_low 12 ALIGNMENT 0 Y12-12l24.q1k chr15 912 745 571959 571958 C 168 0.00 1226 reject_low 13 ALIGNMENT 0 Y12-12l24.q1k chr09 745 912 336417 336416 F 168 0.00 1226 reject_low 9 ALIGNMENT 77 Y12-12l24.q1k chr07 746 665 531612 531693 C 82 98.78 1226 reject_low 7 ALIGNMENT 77 Y12-12l24.q1k chr12 744 667 793918 793995 C 78 100.00 1226 reject_low 14 ALIGNMENT 78 Y12-12l24.q1k chr09 665 744 336338 336417 F 80 100.00 1226 reject_low 9 ALIGNMENT 0 Y12-12l24.q1k chr14 737 912 519163 519162 F 176 0.00 1226 reject_low 16 ALIGNMENT 0 Y12-12l24.q1k chr07 912 747 531613 531612 C 166 0.00 1226 reject_low 7 ALIGNMENT 83 Y12-12l24.q1k chr10 665 749 374332 374416 F 85 100.00 1226 reject_low 4 ALIGNMENT 78 Y12-12l24.q1k chr10 744 665 541422 541501 C 80 100.00 1226 reject_low 11 ALIGNMENT 0 Y12-12l24.q1k chr09 62 664 324293 324292 F 603 0.00 1226 reject_low 6 ALIGNMENT 0 Y12-12l24.q1k chr10 912 745 204653 204652 C 168 0.00 1226 reject_low 10 ALIGNMENT 70 Y12-12l24.q1k chr14 666 736 519093 519163 F 71 100.00 1226 reject_low 16 ALIGNMENT 0 Y12-12l24.q1k chr11 746 912 513046 513045 F 167 0.00 1226 reject_low 8 ALIGNMENT 0 Y12-12l24.q1k chr10 912 750 355368 355367 C 163 0.00 1226 reject_low 3 ALIGNMENT 0 Y12-12l24.q1k chr09 62 664 336338 336337 F 603 0.00 1226 reject_low 9 ALIGNMENT 0 Y12-12l24.q1k chr15 664 62 572038 572037 C 603 0.00 1226 reject_low 13 ALIGNMENT 354 Y12-12l24.p1k chr12 1079 22 811101 812159 C 1058 78.73 1409 reject_low 1 ALIGNMENT 75 Y12-12l24.q1k chr12 744 665 427133 427212 C 80 98.75 1226 reject_low 15 ALIGNMENT 0 Y12-12l24.q1k chr10 750 912 374416 374415 F 163 0.00 1226 reject_low 4 ALIGNMENT 0 Y12-12l24.q1k chr07 664 62 531694 531693 C 603 0.00 1226 reject_low 7 ALIGNMENT 0 Y12-12l24.q1k chr10 912 745 541423 541422 C 168 0.00 1226 reject_low 11 ALIGNMENT 78 Y12-12l24.q1k chr11 666 745 512967 513046 F 80 100.00 1226 reject_low 8 ALIGNMENT 0 Y12-12l24.q1k chr14 62 665 519093 519092 F 604 0.00 1226 reject_low 16 ALIGNMENT 0 Y12-12l24.q1k chr12 664 62 427213 427212 C 603 0.00 1226 reject_low 15 ALIGNMENT 83 Y12-12l24.q1k chr02 749 665 405949 406033 C 85 100.00 1226 reject_low 2 ALIGNMENT 0 Y12-12l24.q1k chr04 912 750 568957 568956 C 163 0.00 1226 reject_low 5 ALIGNMENT 0 Y12-12l24.q1k chr12 666 62 793996 793995 C 605 0.00 1226 reject_low 14 ALIGNMENT 0 Y12-12l24.q1k chr12 912 745 427134 427133 C 168 0.00 1226 reject_low 15 ALIGNMENT 0 Y12-12l24.q1k chr10 664 62 541502 541501 C 603 0.00 1226 reject_low 11 ALIGNMENT 0 Y12-12l24.q1k chr11 62 665 512967 512966 F 604 0.00 1226 reject_low 8 ALIGNMENT 80 Y12-12l24.q1k chr04 749 665 568956 569040 C 85 98.82 1226 reject_low 5 ALIGNMENT 0 Y12-12l24.q1k chr13 912 745 463554 463553 C 168 0.00 1226 reject_low 12 ALIGNMENT 0 Y12-12l24.q1k chr09 746 912 324373 324372 F 167 0.00 1226 reject_low 6 ALIGNMENT 0 Y12-12l24.q1k chr10 664 62 355452 355451 C 603 0.00 1226 reject_low 3 ALIGNMENT 0 Y12-12l24.q1k chr12 912 745 793919 793918 C 168 0.00 1226 reject_low 14 ALIGNMENT 1048 Y12-12l24.q1k chr07 29 1212 543937 545122 F 1184 97.21 1226 accept 0 ALIGNMENT 78 Y12-12l24.q1k chr15 744 665 571958 572037 C 80 100.00 1226 reject_low 13 ALIGNMENT 1057 Y12-12l24.p1k chr07 1277 22 549220 550487 C 1256 96.02 1409 accept 0 ALIGNMENT 83 Y12-12l24.q1k chr10 749 665 355367 355451 C 85 100.00 1226 reject_low 3 ALIGNMENT 0 Y12-12l24.q1k chr10 62 664 374332 374331 F 603 0.00 1226 reject_low 4 ALIGNMENT 79 Y12-12l24.q1k chr09 665 745 324293 324373 F 81 100.00 1226 reject_low 6 ALIGNMENT 0 Y12-12l24.q1k chr04 664 62 569041 569040 C 603 0.00 1226 reject_low 5 ALIGNMENT 0 Y12-12l24.q1k chr02 912 750 405950 405949 C 163 0.00 1226 reject_low 2 ALIGNMENT 716 Y12-12m01.q1k chr04 959 34 92156 93084 C 926 94.49 1334 accept 0 ALIGNMENT 847 Y12-12m01.p1k chr04 17 1069 87783 88849 F 1053 94.87 1331 accept 0 ALIGNMENT 25 Y12-12m03.p1k chr06 693 725 160559 160591 F 33 100.00 1344 reject_low 9 ALIGNMENT 0 Y12-12m03.p1k chr04 726 837 747530 747529 F 112 0.00 1344 reject_low 7 ALIGNMENT 26 Y12-12m03.p1k chr07 725 687 53133 53171 C 39 97.44 1344 reject_low 8 ALIGNMENT 0 Y12-12m03.p1k chr04 62 686 747492 747491 F 625 0.00 1344 reject_low 7 ALIGNMENT 0 Y12-12m03.p1k chr02 62 668 780395 780394 F 607 0.00 1344 reject_low 1 ALIGNMENT 22 Y12-12m03.p1k chr06 725 689 87980 88016 C 37 94.59 1344 reject_low 13 ALIGNMENT 26 Y12-12m03.p1k chr04 687 725 747492 747530 F 39 97.44 1344 reject_low 7 ALIGNMENT 0 Y12-12m03.p1k chr13 62 692 44375 44374 F 631 0.00 1344 reject_low 12 ALIGNMENT 24 Y12-12m03.p1k chr02 677 724 780313 780360 F 48 91.67 1344 reject_low 6 ALIGNMENT 0 Y12-12m03.p1k chr02 725 837 780396 780395 F 113 0.00 1344 reject_low 2 ALIGNMENT 29 Y12-12m03.p1k chr09 725 675 169456 169506 C 51 94.12 1344 reject_low 3 ALIGNMENT 0 Y12-12m03.p1k chr13 837 727 539498 539497 C 111 0.00 1344 reject_low 10 ALIGNMENT 0 Y12-12m03.p1k chr07 686 62 53172 53171 C 625 0.00 1344 reject_low 8 ALIGNMENT 0 Y12-12m03.p1k chr06 62 692 160559 160558 F 631 0.00 1344 reject_low 9 ALIGNMENT 0 Y12-12m03.p1k chr02 725 837 780360 780359 F 113 0.00 1344 reject_low 6 ALIGNMENT 933 Y12-12m03.p1k chr04 1139 22 922611 923743 C 1118 96.15 1344 accept 0 ALIGNMENT 28 Y12-12m03.p1k chr02 666 724 780338 780396 F 59 91.53 1344 reject_low 2 ALIGNMENT 23 Y12-12m03.p1k chr15 687 722 235376 235411 F 36 97.22 1344 reject_low 11 ALIGNMENT 0 Y12-12m03.p1k chr09 837 726 169457 169456 C 112 0.00 1344 reject_low 3 ALIGNMENT 956 Y12-12m03.q1k chr04 36 1135 919249 920359 F 1100 97.09 1329 accept 0 ALIGNMENT 0 Y12-12m03.p1k chr09 674 62 169507 169506 C 613 0.00 1344 reject_low 3 ALIGNMENT 0 Y12-12m03.p1k chr06 688 62 88017 88016 C 627 0.00 1344 reject_low 13 ALIGNMENT 21 Y12-12m03.p1k chr02 666 712 72348 72394 F 47 91.49 1344 reject_low 4 ALIGNMENT 0 Y12-12m03.p1k chr06 837 726 87981 87980 C 112 0.00 1344 reject_low 13 ALIGNMENT 0 Y12-12m03.p1k chr05 837 726 83162 83161 C 112 0.00 1344 reject_low 5 ALIGNMENT 31 Y12-12m03.p1k chr02 669 725 780395 780451 F 57 92.98 1344 reject_low 1 ALIGNMENT 0 Y12-12m03.p1k chr07 837 726 53134 53133 C 112 0.00 1344 reject_low 8 ALIGNMENT 0 Y12-12m03.p1k chr02 62 665 780338 780337 F 604 0.00 1344 reject_low 2 ALIGNMENT 0 Y12-12m03.p1k chr12 62 695 556338 556337 F 634 0.00 1344 reject_low 14 ALIGNMENT 0 Y12-12m03.p1k chr02 713 837 72394 72393 F 125 0.00 1344 reject_low 4 ALIGNMENT 25 Y12-12m03.p1k chr05 725 669 83161 83217 C 57 89.47 1344 reject_low 5 ALIGNMENT 0 Y12-12m03.p1k chr15 62 686 235376 235375 F 625 0.00 1344 reject_low 11 ALIGNMENT 0 Y12-12m03.p1k chr12 725 837 556366 556365 F 113 0.00 1344 reject_low 14 ALIGNMENT 0 Y12-12m03.p1k chr15 723 837 235411 235410 F 115 0.00 1344 reject_low 11 ALIGNMENT 0 Y12-12m03.p1k chr05 668 62 83218 83217 C 607 0.00 1344 reject_low 5 ALIGNMENT 22 Y12-12m03.p1k chr12 696 724 556338 556366 F 29 100.00 1344 reject_low 14 ALIGNMENT 0 Y12-12m03.p1k chr02 62 676 780313 780312 F 615 0.00 1344 reject_low 6 ALIGNMENT 0 Y12-12m03.p1k chr06 726 837 160591 160590 F 112 0.00 1344 reject_low 9 ALIGNMENT 0 Y12-12m03.p1k chr13 725 837 44406 44405 F 113 0.00 1344 reject_low 12 ALIGNMENT 0 Y12-12m03.p1k chr02 726 837 780451 780450 F 112 0.00 1344 reject_low 1 ALIGNMENT 0 Y12-12m03.p1k chr13 704 62 539519 539518 C 643 0.00 1344 reject_low 10 ALIGNMENT 24 Y12-12m03.p1k chr13 693 724 44375 44406 F 32 100.00 1344 reject_low 12 ALIGNMENT 0 Y12-12m03.p1k chr02 62 665 72348 72347 F 604 0.00 1344 reject_low 4 ALIGNMENT 20 Y12-12m03.p1k chr13 726 705 539497 539518 C 22 100.00 1344 reject_low 10 ALIGNMENT 1059 Y12-12m04.p1k chr09 1229 19 243792 245017 C 1211 96.20 1391 accept 0 ALIGNMENT 1051 Y12-12m04.q1k chr09 28 1195 240839 242022 F 1168 97.09 1387 accept 0 ALIGNMENT 40 Y12-12m05.q1k chr15 294 427 407435 407568 F 134 76.87 1307 reject_low 1 ALIGNMENT 872 Y12-12m05.p1k chr04 1018 22 1013840 1014846 C 997 97.19 1379 accept 0 ALIGNMENT 0 Y12-12m05.q1k chr15 62 92 407234 407233 F 31 0.00 1307 reject_low 1 ALIGNMENT 919 Y12-12m05.q1k chr04 36 1093 1009088 1010157 F 1058 96.50 1307 accept 0 ALIGNMENT 0 Y12-12m05.q1k chr15 428 876 407568 407567 F 449 0.00 1307 reject_low 1 ALIGNMENT 0 Y12-12m05.q1k chr15 144 293 407285 407434 F 150 0.00 1307 reject_low 1 ALIGNMENT 35 Y12-12m05.q1k chr15 93 143 407234 407284 F 51 92.16 1307 reject_low 1 ALIGNMENT 22 Y12-12m06.q1k chr14 1061 1013 6850 6897 C 49 85.71 1345 reject_low 4 ALIGNMENT 306 Y12-12m06.q1k chr12 1080 429 11493 12137 C 652 86.20 1345 reject_low 12,13 ALIGNMENT 0 Y12-12m06.q1k chr01 428 62 854 853 C 367 0.00 1345 reject_low 25 ALIGNMENT 351 Y12-12m06.q1k chr09 1015 429 7242 7836 C 587 89.95 1345 reject_low 8 ALIGNMENT 1053 Y12-12m06.p1k chr08 1212 20 558808 560005 C 1193 96.40 1452 reject_low 17 ALIGNMENT 545 Y12-12m06.q1k chr13 1158 31 5643 6794 C 1128 85.46 1345 ambiguous_tel 2 ALIGNMENT 0 Y12-12m06.q1k chr02 428 62 6660 6659 C 367 0.00 1345 reject_low 10 ALIGNMENT 329 Y12-12m06.q1k chr16 1061 429 6652 7275 C 633 87.68 1345 reject_low 11 ALIGNMENT 0 Y12-12m06.q1k chr03 62 428 315727 315726 F 367 0.00 1345 reject_low 23 ALIGNMENT 1053 Y12-12m06.p1k chr02 20 1212 2826 4023 F 1193 96.40 1452 reject_low 10 ALIGNMENT 0 Y12-12m06.q1k chr10 428 62 7820 7819 C 367 0.00 1345 reject_low 7 ALIGNMENT 1036 Y12-12m06.p1k chr08 20 1212 2358 3554 F 1193 95.98 1452 reject_low 9 ALIGNMENT 1045 Y12-12m06.p1k chr16 1212 20 944355 945551 C 1193 96.23 1452 reject_low 18 ALIGNMENT 633 Y12-12m06.q1k chr06 1065 31 4938 5980 C 1035 88.99 1345 ambiguous_tel 0 ALIGNMENT 351 Y12-12m06.q1k chr10 1015 429 7225 7819 C 587 89.95 1345 reject_low 7 ALIGNMENT 1041 Y12-12m06.p1k chr12 1254 20 1074610 1075854 C 1235 95.22 1452 reject_low 15 ALIGNMENT 688 Y12-12m06.q1k chr09 31 1161 438608 439766 F 1131 89.12 1345 reject_low 19 ALIGNMENT 1044 Y12-12m06.p1k chr05 1254 20 573238 574482 C 1235 95.30 1452 reject_low 3 ALIGNMENT 411 Y12-12m06.q1k chr05 429 1161 569543 570288 F 733 88.40 1345 reject_low 3 ALIGNMENT 0 Y12-12m06.q1k chr16 428 62 7276 7275 C 367 0.00 1345 reject_low 11 ALIGNMENT 325 Y12-12m06.q1k chr07 1039 429 215 833 C 611 87.40 1345 reject_low 26 ALIGNMENT 1041 Y12-12m06.p1k chr04 1254 20 1528409 1529653 C 1235 95.22 1452 reject_low 5 ALIGNMENT 591 Y12-12m06.q1k chr10 31 1069 744364 745409 F 1039 87.97 1345 reject_low 20 ALIGNMENT 1043 Y12-12m06.p1k chr16 20 1250 2318 3557 F 1231 95.53 1452 reject_low 11 ALIGNMENT 324 Y12-12m06.q1k chr15 429 1161 1083866 1084598 F 733 85.27 1345 reject_low 6 ALIGNMENT 1073 Y12-12m06.p1k chr09 20 1250 2797 4036 F 1231 96.34 1452 reject_low 8 ALIGNMENT 1046 Y12-12m06.p1k chr05 20 1250 2473 3712 F 1231 95.61 1452 reject_low 16 ALIGNMENT 1054 Y12-12m06.p1k chr06 20 1212 1663 2859 F 1193 96.48 1452 ambiguous_tel 0 ALIGNMENT 314 Y12-12m06.q1k chr02 1161 429 5902 6659 C 733 84.31 1345 reject_low 10 ALIGNMENT 0 Y12-12m06.q1k chr15 62 428 1083866 1083865 F 367 0.00 1345 reject_low 6 ALIGNMENT 1042 Y12-12m06.p1k chr12 20 1212 2626 3822 F 1193 96.14 1452 reject_low 12 ALIGNMENT 1076 Y12-12m06.p1k chr10 20 1250 2780 4019 F 1231 96.43 1452 reject_low 7 ALIGNMENT 537 Y12-12m06.q1k chr14 1012 33 6887 7879 C 980 87.35 1345 reject_low 4 ALIGNMENT 28 Y12-12m06.q1k chr08 944 910 5045 5079 C 35 97.14 1345 reject_low 9 ALIGNMENT 1042 Y12-12m06.p1k chr13 20 1212 2502 3698 F 1193 96.14 1452 ambiguous_tel 2 ALIGNMENT 559 Y12-12m06.q1k chr04 1080 31 290 1357 C 1050 86.86 1345 reject_low 22 ALIGNMENT 1042 Y12-12m06.p1k chr12 20 1212 8161 9357 F 1193 96.14 1452 reject_low 13 ALIGNMENT 545 Y12-12m06.q1k chr02 31 1158 811923 813074 F 1128 85.46 1345 reject_low 21 ALIGNMENT 487 Y12-12m06.q1k chr08 895 31 5081 5950 C 865 87.63 1345 reject_low 9 ALIGNMENT 1043 Y12-12m06.p1k chr14 20 1250 2409 3648 F 1231 95.53 1452 reject_low 4 ALIGNMENT 1041 Y12-12m06.p1k chr12 1254 20 1067947 1069191 C 1235 95.22 1452 reject_low 14 ALIGNMENT 0 Y12-12m06.q1k chr05 62 428 569543 569542 F 367 0.00 1345 reject_low 3 ALIGNMENT 324 Y12-12m06.q1k chr13 477 1074 923535 924143 F 598 87.96 1345 reject_low 24 ALIGNMENT 1041 Y12-12m06.p1k chr15 1254 20 1087574 1088818 C 1235 95.22 1452 reject_low 6 ALIGNMENT 0 Y12-12m06.q1k chr14 1012 1013 6898 6886 C 0 0.00 1345 reject_low 4 ALIGNMENT 398 Y12-12m06.q1k chr03 429 1061 315727 316360 F 633 90.52 1345 reject_low 23 ALIGNMENT 0 Y12-12m06.q1k chr08 909 896 5080 5080 C 14 0.00 1345 reject_low 9 ALIGNMENT 0 Y12-12m06.q1k chr13 62 476 923535 923534 F 415 0.00 1345 reject_low 24 ALIGNMENT 0 Y12-12m06.q1k chr09 428 62 7837 7836 C 367 0.00 1345 reject_low 8 ALIGNMENT 590 Y12-12m06.q1k chr07 31 1080 1083180 1084242 F 1050 87.90 1345 ambiguous_tel 1 ALIGNMENT 0 Y12-12m06.q1k chr04 62 428 1524556 1524555 F 367 0.00 1345 reject_low 5 ALIGNMENT 0 Y12-12m06.q1k chr07 428 62 834 833 C 367 0.00 1345 reject_low 26 ALIGNMENT 1044 Y12-12m06.p1k chr07 1254 20 1087315 1088559 C 1235 95.30 1452 ambiguous_tel 1 ALIGNMENT 0 Y12-12m06.q1k chr12 428 62 12138 12137 C 367 0.00 1345 reject_low 12,13 ALIGNMENT 325 Y12-12m06.q1k chr01 1058 429 215 853 C 630 86.98 1345 reject_low 25 ALIGNMENT 336 Y12-12m06.q1k chr04 429 1159 1524556 1525295 F 731 85.77 1345 reject_low 5 ALIGNMENT 189 Y12-12m08.q1k chr12 1128 766 819775 820143 C 363 83.47 1339 reject_low 1 ALIGNMENT 0 Y12-12m08.q1k chr12 765 62 820144 820143 C 704 0.00 1339 reject_low 1 ALIGNMENT 551 Y12-12m08.p1k chr12 19 1125 812648 813758 F 1107 84.01 1384 reject_low 1 ALIGNMENT 980 Y12-12m08.q1k chr07 1230 33 556199 557411 C 1198 94.66 1339 accept 0 ALIGNMENT 1012 Y12-12m08.p1k chr07 19 1205 550976 552179 F 1187 96.29 1384 accept 0 ALIGNMENT 949 Y12-12m09.q1k chr11 42 1135 317998 319099 F 1094 96.07 1355 accept 0 ALIGNMENT 931 Y12-12m09.p1k chr11 1113 25 322911 324008 C 1089 96.33 1338 accept 0 ALIGNMENT 0 Y12-12m11.p1k chr12 182 220 451419 451418 F 39 0.00 1432 reject_low 1 ALIGNMENT 0 Y12-12m11.p1k chr12 182 568 489754 489753 F 387 0.00 1432 reject_low 2 ALIGNMENT 619 Y12-12m11.p1k chr12 221 1072 451419 452279 F 852 92.49 1432 reject_low 1 ALIGNMENT 730 Y12-12m11.p1k chr12 80 1072 460417 461416 F 993 92.85 1432 accept 0 ALIGNMENT 333 Y12-12m11.p1k chr12 569 1072 489754 490247 F 504 90.67 1432 reject_low 2 ALIGNMENT 874 Y12-12m12.p1k chr12 1081 25 460398 461472 C 1057 95.74 1335 accept 0 ALIGNMENT 837 Y12-12m12.p1k chr12 939 25 451419 452335 C 915 98.14 1335 reject_low 2 ALIGNMENT 523 Y12-12m12.p1k chr12 573 25 489754 490303 C 549 98.72 1335 reject_low 3 ALIGNMENT 927 Y12-12m12.q1k chr12 42 1132 466668 467784 F 1091 96.24 1380 reject_low 1 ALIGNMENT 0 Y12-12m12.p1k chr12 810 574 489755 489754 C 237 0.00 1335 reject_low 3 ALIGNMENT 927 Y12-12m12.q1k chr12 42 1132 457531 458647 F 1091 96.24 1380 accept 0 ALIGNMENT 1065 Y12-12m13.q1k chr12 1252 36 774792 776008 C 1217 96.96 1342 accept 0 ALIGNMENT 929 Y12-12m13.p1k chr12 21 1138 769928 771043 F 1118 95.80 1367 accept 0 ALIGNMENT 0 Y12-12m15.p1k chr11 634 795 64251 64250 F 162 0.00 1418 reject_low 2 ALIGNMENT 916 Y12-12m15.p1k chr11 24 1101 63737 64820 F 1078 97.87 1418 accept 0 ALIGNMENT 57 Y12-12m15.p1k chr11 232 537 64039 64347 F 306 86.27 1418 reject_low 1 ALIGNMENT 44 Y12-12m15.p1k chr11 324 633 63945 64251 F 310 86.45 1418 reject_low 2 ALIGNMENT 0 Y12-12m15.p1k chr11 62 231 64039 64038 F 170 0.00 1418 reject_low 1 ALIGNMENT 993 Y12-12m15.q1k chr11 1199 35 68652 69831 C 1165 95.28 1354 accept 0 ALIGNMENT 0 Y12-12m15.p1k chr11 62 323 63945 63944 F 262 0.00 1418 reject_low 2 ALIGNMENT 0 Y12-12m15.p1k chr11 538 795 64347 64346 F 258 0.00 1418 reject_low 1 ALIGNMENT 901 Y12-12m16.q1k chr04 1081 37 800382 801437 C 1045 95.98 1360 accept 0 ALIGNMENT 1015 Y12-12m16.p1k chr04 24 1147 797277 798411 F 1124 98.04 1439 accept 0 ALIGNMENT 1028 Y12-12m17.p1k chr03 20 1239 253320 254557 F 1220 95.57 1343 accept 0 ALIGNMENT 794 Y12-12m17.q1k chr03 1117 79 257026 258081 C 1039 93.36 1329 accept 0 ALIGNMENT 1005 Y12-12m18.p1k chr10 1176 22 174444 175608 C 1155 96.54 1375 accept 0 ALIGNMENT 512 Y12-12m18.q1k chr10 134 849 170459 171161 F 716 92.46 1662 accept 0 ALIGNMENT 1089 Y12-12m19.q1k chr10 37 1229 372005 373201 F 1193 98.16 1272 accept_chi 0 ALIGNMENT 891 Y12-12m19.p1k chr04 22 1053 1177025 1178070 F 1032 97.09 1344 accept_chi 1 ALIGNMENT 883 Y12-12m20.p1k chr08 33 1017 219546 220545 F 985 97.66 1337 accept 0 ALIGNMENT 42 Y12-12m21.p1k chr05 488 655 63710 63880 F 168 76.19 1329 reject_low 7 ALIGNMENT 60 Y12-12m21.p1k chr09 664 479 8994 9182 C 186 78.49 1329 reject_low 2 ALIGNMENT 0 Y12-12m21.p1k chr09 874 665 8995 8994 C 210 0.00 1329 reject_low 2 ALIGNMENT 0 Y12-12m21.p1k chr05 656 874 63880 63879 F 219 0.00 1329 reject_low 7 ALIGNMENT 0 Y12-12m21.p1k chr08 485 197 12304 12303 C 289 0.00 1329 reject_low 6 ALIGNMENT 0 Y12-12m21.p1k chr01 874 674 2000 1999 C 201 0.00 1329 reject_low 5 ALIGNMENT 0 Y12-12m21.p1k chr10 874 665 8978 8977 C 210 0.00 1329 reject_low 3 ALIGNMENT 62 Y12-12m21.p1k chr12 673 479 13275 13472 C 195 78.46 1329 reject_low 1 ALIGNMENT 53 Y12-12m21.p1k chr08 673 486 12113 12303 C 188 77.13 1329 reject_low 6 ALIGNMENT 0 Y12-12m21.p1k chr12 197 478 1062889 1062888 F 282 0.00 1329 reject_low 4 ALIGNMENT 0 Y12-12m21.p1k chr01 478 197 2197 2196 C 282 0.00 1329 reject_low 5 ALIGNMENT 0 Y12-12m21.p1k chr12 478 197 13473 13472 C 282 0.00 1329 reject_low 1 ALIGNMENT 60 Y12-12m21.p1k chr10 664 479 8977 9165 C 186 78.49 1329 reject_low 3 ALIGNMENT 0 Y12-12m21.p1k chr12 674 874 1063086 1063085 F 201 0.00 1329 reject_low 4 ALIGNMENT 59 Y12-12m21.p1k chr12 479 673 1062889 1063086 F 195 78.46 1329 reject_low 4 ALIGNMENT 0 Y12-12m21.p1k chr05 197 487 63710 63709 F 291 0.00 1329 reject_low 7 ALIGNMENT 0 Y12-12m21.p1k chr12 874 674 13276 13275 C 201 0.00 1329 reject_low 1 ALIGNMENT 0 Y12-12m21.p1k chr09 478 197 9183 9182 C 282 0.00 1329 reject_low 2 ALIGNMENT 53 Y12-12m21.p1k chr01 673 479 1999 2196 C 195 77.44 1329 reject_low 5 ALIGNMENT 0 Y12-12m21.p1k chr10 478 197 9166 9165 C 282 0.00 1329 reject_low 3 ALIGNMENT 0 Y12-12m21.p1k chr08 874 674 12114 12113 C 201 0.00 1329 reject_low 6 ALIGNMENT 828 Y12-12m21.p1k chr03 83 1086 289607 290615 F 1004 95.82 1329 accept 0 ALIGNMENT 721 Y12-12m23.q1k chr05 84 1060 168573 169555 F 977 92.43 1260 accept 0 ALIGNMENT 968 Y12-12m23.p1k chr05 1130 34 170138 171236 C 1097 97.36 1362 accept 0 ALIGNMENT 984 Y12-12m24.q1k chr05 32 1277 345769 347033 F 1246 94.14 1290 accept 0 ALIGNMENT 1014 Y12-12m24.p1k chr05 1174 18 347957 349119 C 1157 96.46 1341 accept 0 ALIGNMENT 899 Y12-12n01.q1k chr13 35 1123 364190 365264 F 1089 95.50 1334 accept 0 ALIGNMENT 1019 Y12-12n01.p1k chr13 1228 20 367798 369020 C 1209 96.03 1378 accept 0 ALIGNMENT 0 Y12-12n02.p1k chr05 218 62 443539 443538 C 157 0.00 1389 reject_low 2 ALIGNMENT 0 Y12-12n02.p1k chr04 904 347 519333 519332 C 558 0.00 1389 reject_low 22 ALIGNMENT 0 Y12-12n02.p1k chr05 218 62 498225 498224 C 157 0.00 1389 reject_low 7 ALIGNMENT 58 Y12-12n02.p1k chr04 350 242 883898 884004 C 109 87.16 1389 reject_low 14 ALIGNMENT 65 Y12-12n02.p1k chr16 219 350 844600 844729 F 132 86.36 1389 reject_low 5 ALIGNMENT 31 Y12-12n02.p1k chr04 346 300 871764 871810 C 47 91.49 1389 reject_low 24 ALIGNMENT 93 Y12-12n02.p1k chr11 346 181 313267 313429 C 166 88.55 1389 reject_low 26 ALIGNMENT 65 Y12-12n02.p1k chr13 350 219 372712 372841 C 132 86.36 1389 reject_low 4 ALIGNMENT 0 Y12-12n02.p1k chr13 904 347 357025 357024 C 558 0.00 1389 reject_low 11 ALIGNMENT 36 Y12-12n02.p1k chr03 72 169 149498 149597 F 98 81.63 1389 reject_low 28 ALIGNMENT 65 Y12-12n02.p1k chr01 346 219 160259 160384 C 128 86.72 1389 reject_low 8 ALIGNMENT 0 Y12-12n02.p1k chr16 904 347 810246 810245 C 558 0.00 1389 reject_low 20 ALIGNMENT 0 Y12-12n02.p1k chr04 107 62 434696 434695 C 46 0.00 1389 reject_low 27 ALIGNMENT 0 Y12-12n02.p1k chr04 180 170 434603 434633 C 11 0.00 1389 reject_low 27 ALIGNMENT 0 Y12-12n02.p1k chr04 904 351 883899 883898 C 554 0.00 1389 reject_low 14 ALIGNMENT 0 Y12-12n02.p1k chr16 128 62 850432 850431 C 67 0.00 1389 reject_low 15 ALIGNMENT 0 Y12-12n02.p1k chr16 904 347 850646 850645 C 558 0.00 1389 reject_low 10 ALIGNMENT 62 Y12-12n02.p1k chr05 350 219 498095 498224 C 132 85.61 1389 reject_low 7 ALIGNMENT 58 Y12-12n02.p1k chr04 350 242 645513 645619 C 109 87.16 1389 reject_low 13 ALIGNMENT 55 Y12-12n02.p1k chr03 220 345 149663 149786 F 126 84.13 1389 reject_low 28 ALIGNMENT 0 Y12-12n02.p1k chr03 904 347 168616 168615 C 558 0.00 1389 reject_low 16 ALIGNMENT 0 Y12-12n02.p1k chr01 904 347 160260 160259 C 558 0.00 1389 reject_low 8 ALIGNMENT 39 Y12-12n02.p1k chr04 346 242 519332 519432 C 105 82.86 1389 reject_low 22 ALIGNMENT 0 Y12-12n02.p1k chr16 62 218 850191 850190 F 157 0.00 1389 reject_low 6 ALIGNMENT 0 Y12-12n02.p1k chr04 904 347 871765 871764 C 558 0.00 1389 reject_low 24 ALIGNMENT 65 Y12-12n02.p1k chr05 350 219 443409 443538 C 132 86.36 1389 reject_low 2 ALIGNMENT 55 Y12-12n02.p1k chr16 346 242 810245 810347 C 105 86.67 1389 reject_low 20 ALIGNMENT 0 Y12-12n02.p1k chr04 62 218 1151216 1151215 F 157 0.00 1389 reject_low 17 ALIGNMENT 0 Y12-12n02.p1k chr05 241 62 436063 436062 C 180 0.00 1389 reject_low 23 ALIGNMENT 0 Y12-12n02.p1k chr04 241 62 884005 884004 C 180 0.00 1389 reject_low 14 ALIGNMENT 48 Y12-12n02.p1k chr11 169 108 313461 313522 C 62 93.55 1389 reject_low 26 ALIGNMENT 0 Y12-12n02.p1k chr16 241 62 804764 804763 C 180 0.00 1389 reject_low 19 ALIGNMENT 0 Y12-12n02.p1k chr05 904 344 435966 435965 C 561 0.00 1389 reject_low 23 ALIGNMENT 55 Y12-12n02.p1k chr16 346 242 804661 804763 C 105 86.67 1389 reject_low 19 ALIGNMENT 55 Y12-12n02.p1k chr12 242 346 593358 593460 F 105 86.67 1389 reject_low 18 ALIGNMENT 62 Y12-12n02.p1k chr13 346 219 357024 357149 C 128 85.94 1389 reject_low 11 ALIGNMENT 1031 Y12-12n02.p1k chr02 1245 27 257775 259002 C 1219 96.23 1389 accept 0 ALIGNMENT 0 Y12-12n02.p1k chr04 322 62 1151388 1151387 C 261 0.00 1389 reject_low 25 ALIGNMENT 0 Y12-12n02.p1k chr07 347 904 541669 541668 F 558 0.00 1389 reject_low 9 ALIGNMENT 0 Y12-12n02.p1k chr04 904 351 645514 645513 C 554 0.00 1389 reject_low 13 ALIGNMENT 0 Y12-12n02.p1k chr11 904 347 313268 313267 C 558 0.00 1389 reject_low 26 ALIGNMENT 62 Y12-12n02.p1k chr13 346 219 362606 362731 C 128 85.94 1389 reject_low 12 ALIGNMENT 0 Y12-12n02.p1k chr03 170 219 149598 149662 F 50 0.00 1389 reject_low 28 ALIGNMENT 0 Y12-12n02.p1k chr12 218 62 215227 215226 C 157 0.00 1389 reject_low 3 ALIGNMENT 0 Y12-12n02.p1k chr16 904 347 804662 804661 C 558 0.00 1389 reject_low 19 ALIGNMENT 65 Y12-12n02.p1k chr12 350 219 215097 215226 C 132 86.36 1389 reject_low 3 ALIGNMENT 0 Y12-12n02.p1k chr13 218 62 372842 372841 C 157 0.00 1389 reject_low 4 ALIGNMENT 993 Y12-12n02.q1k chr02 30 1135 253303 254398 F 1106 97.56 1347 accept 0 ALIGNMENT 41 Y12-12n02.p1k chr16 220 345 804516 804634 F 126 83.33 1389 reject_low 21 ALIGNMENT 0 Y12-12n02.p1k chr16 218 62 850771 850770 C 157 0.00 1389 reject_low 10 ALIGNMENT 0 Y12-12n02.p1k chr13 904 351 372713 372712 C 554 0.00 1389 reject_low 4 ALIGNMENT 0 Y12-12n02.p1k chr04 299 62 871811 871810 C 238 0.00 1389 reject_low 24 ALIGNMENT 87 Y12-12n02.p1k chr04 346 181 434440 434602 C 166 87.35 1389 reject_low 27 ALIGNMENT 0 Y12-12n02.p1k chr11 180 170 313430 313460 C 11 0.00 1389 reject_low 26 ALIGNMENT 21 Y12-12n02.p1k chr04 345 323 1151365 1151387 C 23 100.00 1389 reject_low 25 ALIGNMENT 0 Y12-12n02.p1k chr12 62 241 593358 593357 F 180 0.00 1389 reject_low 18 ALIGNMENT 0 Y12-12n02.p1k chr16 351 904 850320 850319 F 554 0.00 1389 reject_low 6 ALIGNMENT 0 Y12-12n02.p1k chr05 904 351 498096 498095 C 554 0.00 1389 reject_low 7 ALIGNMENT 65 Y12-12n02.p1k chr07 219 346 541544 541669 F 128 86.72 1389 reject_low 9 ALIGNMENT 0 Y12-12n02.p1k chr11 107 62 313523 313522 C 46 0.00 1389 reject_low 26 ALIGNMENT 0 Y12-12n02.p1k chr16 904 153 850409 850408 C 752 0.00 1389 reject_low 15 ALIGNMENT 51 Y12-12n02.p1k chr04 169 108 434634 434695 C 62 95.16 1389 reject_low 27 ALIGNMENT 0 Y12-12n02.p1k chr04 904 347 434441 434440 C 558 0.00 1389 reject_low 27 ALIGNMENT 65 Y12-12n02.p1k chr16 346 219 850645 850770 C 128 86.72 1389 reject_low 10 ALIGNMENT 0 Y12-12n02.p1k chr04 241 62 519433 519432 C 180 0.00 1389 reject_low 22 ALIGNMENT 0 Y12-12n02.p1k chr03 346 904 149786 149785 F 559 0.00 1389 reject_low 28 ALIGNMENT 52 Y12-12n02.p1k chr04 219 346 1151216 1151340 F 128 83.59 1389 reject_low 17 ALIGNMENT 0 Y12-12n02.p1k chr16 62 219 804516 804515 F 158 0.00 1389 reject_low 21 ALIGNMENT 39 Y12-12n02.p1k chr05 343 242 435965 436062 C 102 83.33 1389 reject_low 23 ALIGNMENT 22 Y12-12n02.p1k chr16 152 129 850408 850431 C 24 100.00 1389 reject_low 15 ALIGNMENT 58 Y12-12n02.p1k chr03 346 242 168615 168717 C 105 87.62 1389 reject_low 16 ALIGNMENT 0 Y12-12n02.p1k chr15 904 347 2915 2914 C 558 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-12n02.p1k chr07 62 218 541544 541543 F 157 0.00 1389 reject_low 9 ALIGNMENT 0 Y12-12n02.p1k chr13 218 62 362732 362731 C 157 0.00 1389 reject_low 12 ALIGNMENT 59 Y12-12n02.p1k chr15 346 108 2914 3168 C 239 78.24 1389 reject_low 1 ALIGNMENT 65 Y12-12n02.p1k chr16 219 350 850191 850320 F 132 86.36 1389 reject_low 6 ALIGNMENT 0 Y12-12n02.p1k chr16 62 218 844600 844599 F 157 0.00 1389 reject_low 5 ALIGNMENT 0 Y12-12n02.p1k chr05 904 351 443410 443409 C 554 0.00 1389 reject_low 2 ALIGNMENT 0 Y12-12n02.p1k chr16 346 904 804634 804633 F 559 0.00 1389 reject_low 21 ALIGNMENT 0 Y12-12n02.p1k chr03 241 62 168718 168717 C 180 0.00 1389 reject_low 16 ALIGNMENT 0 Y12-12n02.p1k chr04 347 904 1151340 1151339 F 558 0.00 1389 reject_low 17 ALIGNMENT 0 Y12-12n02.p1k chr13 904 347 362607 362606 C 558 0.00 1389 reject_low 12 ALIGNMENT 0 Y12-12n02.p1k chr12 904 351 215098 215097 C 554 0.00 1389 reject_low 3 ALIGNMENT 0 Y12-12n02.p1k chr13 218 62 357150 357149 C 157 0.00 1389 reject_low 11 ALIGNMENT 0 Y12-12n02.p1k chr16 351 904 844729 844728 F 554 0.00 1389 reject_low 5 ALIGNMENT 0 Y12-12n02.p1k chr01 218 62 160385 160384 C 157 0.00 1389 reject_low 8 ALIGNMENT 0 Y12-12n02.p1k chr04 241 62 645620 645619 C 180 0.00 1389 reject_low 13 ALIGNMENT 0 Y12-12n02.p1k chr15 107 62 3169 3168 C 46 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-12n02.p1k chr16 241 62 810348 810347 C 180 0.00 1389 reject_low 20 ALIGNMENT 0 Y12-12n02.p1k chr12 347 904 593460 593459 F 558 0.00 1389 reject_low 18 ALIGNMENT 0 Y12-12n02.p1k chr04 904 346 1151366 1151365 C 559 0.00 1389 reject_low 25 ALIGNMENT 961 Y12-12n03.p1k chr04 1121 26 1422096 1423199 C 1096 97.26 1350 accept 0 ALIGNMENT 962 Y12-12n03.q1k chr04 28 1116 1419002 1420111 F 1089 96.51 1344 accept 0 ALIGNMENT 320 Y12-12n04.p1k chr14 998 106 406672 407564 C 893 79.40 1338 reject_low 1 ALIGNMENT 989 Y12-12n04.p1k chr09 20 1136 413386 414516 F 1117 97.05 1338 accept 0 ALIGNMENT 0 Y12-12n04.q1k chr11 62 251 399766 399765 F 190 0.00 1307 reject_low 2 ALIGNMENT 904 Y12-12n04.q1k chr09 1036 35 417314 418326 C 1002 97.50 1307 accept 0 ALIGNMENT 75 Y12-12n04.q1k chr11 252 376 399766 399890 F 125 88.80 1307 reject_low 2 ALIGNMENT 0 Y12-12n04.p1k chr14 105 62 407565 407564 C 44 0.00 1338 reject_low 1 ALIGNMENT 0 Y12-12n04.q1k chr11 377 882 399890 399889 F 506 0.00 1307 reject_low 2 ALIGNMENT 987 Y12-12n05.p1k chr14 1152 25 390293 391431 C 1128 96.72 1421 accept 0 ALIGNMENT 973 Y12-12n05.q1k chr14 34 1215 387318 388495 F 1182 95.26 1424 accept 0 ALIGNMENT 828 Y12-12n06.q1k chr07 28 967 260332 261282 F 940 97.02 1282 accept 0 ALIGNMENT 931 Y12-12n06.p1k chr07 1111 31 264138 265228 C 1081 96.76 1442 accept 0 ALIGNMENT 995 Y12-12n07.p1k chr12 1124 28 453520 454627 C 1097 97.45 1344 reject_low 1 ALIGNMENT 767 Y12-12n07.q1k chr12 313 1278 451419 452416 F 966 94.20 1336 reject_low 1 ALIGNMENT 478 Y12-12n07.q1k chr12 661 1278 489754 490384 F 618 93.37 1336 reject_low 2 ALIGNMENT 991 Y12-12n07.q1k chr12 31 1278 460268 461553 F 1248 94.23 1336 accept 0 ALIGNMENT 995 Y12-12n07.p1k chr12 1124 28 462657 463764 C 1097 97.45 1344 accept 0 ALIGNMENT 0 Y12-12n07.q1k chr12 62 660 489754 489753 F 599 0.00 1336 reject_low 2 ALIGNMENT 0 Y12-12n07.q1k chr12 62 312 451419 451418 F 251 0.00 1336 reject_low 1 ALIGNMENT 943 Y12-12n08.q1k chr02 1100 34 465690 466763 C 1067 96.72 1291 accept 0 ALIGNMENT 987 Y12-12n08.p1k chr02 24 1192 462350 463537 F 1169 96.58 1368 accept 0 ALIGNMENT 1007 Y12-12n09.p1k chr14 22 1236 583596 584829 F 1215 95.88 1390 accept 0 ALIGNMENT 879 Y12-12n09.q1k chr14 1033 32 588538 589554 C 1002 97.01 1320 accept 0 ALIGNMENT 924 Y12-12n10.p1k chr07 1133 24 465581 466700 C 1110 95.95 1355 accept 0 ALIGNMENT 927 Y12-12n10.q1k chr07 33 1053 464566 465598 F 1021 97.85 1320 accept 0 ALIGNMENT 913 Y12-12n11.p1k chr11 1074 24 596224 597286 C 1051 96.96 1324 accept 0 ALIGNMENT 1012 Y12-12n11.q1k chr11 33 1190 591007 592173 F 1158 97.32 1391 accept 0 ALIGNMENT 1000 Y12-12n12.q1k chr12 32 1152 463443 464577 F 1121 96.79 1402 accept 1 ALIGNMENT 912 Y12-12n12.p1k chr12 1105 18 466927 468038 C 1088 96.32 1354 accept 1 ALIGNMENT 1000 Y12-12n12.q1k chr12 32 1152 454306 455440 F 1121 96.79 1402 accept 0 ALIGNMENT 912 Y12-12n12.p1k chr12 1105 18 457790 458901 C 1088 96.32 1354 accept 0 ALIGNMENT 976 Y12-12n13.p1k chr15 1139 17 567372 568510 C 1123 97.06 1351 accept 0 ALIGNMENT 953 Y12-12n13.q1k chr15 34 1146 564582 565689 F 1113 95.96 1343 accept 0 ALIGNMENT 791 Y12-12n14.q1k chr12 40 1052 461164 462181 F 1013 93.19 1300 accept 1 ALIGNMENT 435 Y12-12n14.q1k chr12 40 587 489995 490543 F 548 93.80 1300 reject_low 2 ALIGNMENT 1043 Y12-12n14.p1k chr12 1198 20 464364 465555 C 1179 96.86 1386 accept 1 ALIGNMENT 0 Y12-12n14.q1k chr12 588 749 490543 490542 F 162 0.00 1300 reject_low 2 ALIGNMENT 1043 Y12-12n14.p1k chr12 1198 20 455227 456418 C 1179 96.86 1386 accept 0 ALIGNMENT 791 Y12-12n14.q1k chr12 40 1052 452027 453044 F 1013 93.19 1300 accept 0 ALIGNMENT 881 Y12-12n15.q1k chr05 1063 38 332255 333295 C 1026 96.59 1332 accept 0 ALIGNMENT 908 Y12-12n15.p1k chr05 37 1032 328497 329501 F 996 97.49 1399 accept 0 ALIGNMENT 912 Y12-12n16.p1k chr05 1034 17 457380 458409 C 1018 97.35 1367 accept 0 ALIGNMENT 368 Y12-12n16.q1k chr05 21 616 452527 453124 F 596 89.26 920 accept 0 ALIGNMENT 907 Y12-12n17.p1k chr03 59 1205 289976 291144 F 1147 94.86 1372 accept 0 ALIGNMENT 53 Y12-12n17.p1k chr01 275 81 1999 2196 C 195 77.44 1372 reject_low 5 ALIGNMENT 0 Y12-12n17.p1k chr05 258 856 63880 63879 F 599 0.00 1372 reject_low 7 ALIGNMENT 0 Y12-12n17.p1k chr08 856 276 12114 12113 C 581 0.00 1372 reject_low 6 ALIGNMENT 0 Y12-12n17.p1k chr09 856 267 8995 8994 C 590 0.00 1372 reject_low 2 ALIGNMENT 59 Y12-12n17.p1k chr12 81 275 1062889 1063086 F 195 78.46 1372 reject_low 4 ALIGNMENT 0 Y12-12n17.p1k chr01 856 276 2000 1999 C 581 0.00 1372 reject_low 5 ALIGNMENT 60 Y12-12n17.p1k chr10 266 81 8977 9165 C 186 78.49 1372 reject_low 3 ALIGNMENT 0 Y12-12n17.p1k chr12 276 856 1063086 1063085 F 581 0.00 1372 reject_low 4 ALIGNMENT 60 Y12-12n17.p1k chr09 266 81 8994 9182 C 186 78.49 1372 reject_low 2 ALIGNMENT 62 Y12-12n17.p1k chr12 275 81 13275 13472 C 195 78.46 1372 reject_low 1 ALIGNMENT 0 Y12-12n17.p1k chr12 856 276 13276 13275 C 581 0.00 1372 reject_low 1 ALIGNMENT 42 Y12-12n17.p1k chr05 90 257 63710 63880 F 168 76.19 1372 reject_low 7 ALIGNMENT 53 Y12-12n17.p1k chr08 275 88 12113 12303 C 188 77.13 1372 reject_low 6 ALIGNMENT 0 Y12-12n17.p1k chr10 856 267 8978 8977 C 590 0.00 1372 reject_low 3 ALIGNMENT 0 Y12-12n19.q1k chr16 452 173 801137 801136 C 280 0.00 1082 reject_low 1 ALIGNMENT 0 Y12-12n19.q1k chr08 62 266 192116 192115 F 205 0.00 1082 accept 0 ALIGNMENT 116 Y12-12n19.q1k chr16 172 5 801136 801302 C 168 92.86 1082 reject_low 1 ALIGNMENT 947 Y12-12n19.p1k chr08 1149 20 197178 198327 C 1130 96.19 1413 accept 0 ALIGNMENT 285 Y12-12n19.q1k chr08 267 659 192116 192498 F 393 91.60 1082 accept 0 ALIGNMENT 961 Y12-12n20.p1k chr12 1202 49 466659 467824 C 1154 95.23 1445 accept 1 ALIGNMENT 939 Y12-12n20.q1k chr12 35 1117 454662 455757 F 1083 95.94 1279 accept 0 ALIGNMENT 939 Y12-12n20.q1k chr12 35 1117 463799 464894 F 1083 95.94 1279 accept 1 ALIGNMENT 961 Y12-12n20.p1k chr12 1202 49 457522 458687 C 1154 95.23 1445 accept 0 ALIGNMENT 44 Y12-12n22.p1k chr07 288 399 478011 478110 F 112 87.50 1227 accept 0 ALIGNMENT 1041 Y12-12n23.q1k chr12 1279 33 760571 761833 C 1247 95.11 1294 accept 0 ALIGNMENT 198 Y12-12n23.p1k chr12 203 477 755554 755830 F 275 91.27 1273 accept 0 ALIGNMENT 950 Y12-12n24.p1k chr05 18 1116 98313 99410 F 1099 96.54 1351 accept 0 ALIGNMENT 982 Y12-12n24.q1k chr05 1221 37 102419 103626 C 1185 95.86 1265 accept 0 ALIGNMENT 931 Y12-12o02.p1k chr06 14 1233 250488 251695 F 1220 93.52 1395 accept 0 ALIGNMENT 925 Y12-12o03.p1k chr15 20 1075 689555 690612 F 1056 96.97 1392 accept 0 ALIGNMENT 872 Y12-12o03.q1k chr15 1080 35 693731 694771 C 1046 96.27 1249 accept 0 ALIGNMENT 0 Y12-12o04.p1k chr08 138 204 294975 295041 F 67 0.00 1438 reject_low 8 ALIGNMENT 49 Y12-12o04.p1k chr12 1051 841 290730 290940 C 211 75.83 1438 reject_low 7 ALIGNMENT 0 Y12-12o04.p1k chr12 840 549 290941 291232 C 292 0.00 1438 reject_low 7 ALIGNMENT 43 Y12-12o04.p1k chr12 548 43 291233 291738 C 506 71.54 1438 reject_low 7 ALIGNMENT 120 Y12-12o04.p1k chr08 21 1076 291099 292154 F 1056 71.40 1438 reject_low 6 ALIGNMENT 170 Y12-12o04.p1k chr08 25 1118 287271 288364 F 1094 72.85 1438 reject_low 4 ALIGNMENT 117 Y12-12o04.p1k chr04 18 1118 1163130 1164229 F 1101 71.30 1438 reject_low 5 ALIGNMENT 1043 Y12-12o04.p1k chr13 1193 21 288399 289580 C 1173 97.36 1438 accept_chi 1 ALIGNMENT 68 Y12-12o04.p1k chr08 205 572 295042 295409 F 368 73.91 1438 reject_low 8 ALIGNMENT 992 Y12-12o04.q1k chr08 1172 30 59400 60538 C 1143 97.11 1244 accept_chi 0 ALIGNMENT 196 Y12-12o04.p1k chr04 43 1118 1159805 1160880 F 1076 73.61 1438 reject_low 3 ALIGNMENT 0 Y12-12o04.p1k chr08 573 894 295409 295408 F 322 0.00 1438 reject_low 8 ALIGNMENT 24 Y12-12o04.p1k chr08 22 137 294859 294974 F 116 75.86 1438 reject_low 8 ALIGNMENT 196 Y12-12o04.p1k chr04 43 1118 1154413 1155488 F 1076 73.61 1438 reject_low 2 ALIGNMENT 1041 Y12-12o05.p1k chr10 1163 18 151101 152253 C 1146 97.64 1340 accept 0 ALIGNMENT 983 Y12-12o05.q1k chr10 39 1221 147901 149103 F 1183 95.69 1242 accept 0 ALIGNMENT 954 Y12-12o06.q1k chr05 1163 35 216621 217751 C 1129 96.19 1276 accept 0 ALIGNMENT 966 Y12-12o06.p1k chr05 18 1126 213552 214679 F 1109 95.76 1347 accept 0 ALIGNMENT 1037 Y12-12o07.q1k chr12 36 1214 454564 455744 F 1179 96.61 1354 accept 0 ALIGNMENT 912 Y12-12o07.p1k chr12 1061 17 466927 467978 C 1045 96.84 1389 accept 1 ALIGNMENT 912 Y12-12o07.p1k chr12 1061 17 457790 458841 C 1045 96.84 1389 accept 0 ALIGNMENT 1037 Y12-12o07.q1k chr12 36 1214 463701 464881 F 1179 96.61 1354 accept 1 ALIGNMENT 963 Y12-12o08.p1k chr12 20 1160 799577 800736 F 1141 96.93 1425 accept 0 ALIGNMENT 968 Y12-12o08.q1k chr12 1143 31 802293 803413 C 1113 96.68 1363 accept 0 ALIGNMENT 1019 Y12-12o09.p1k chr04 1223 21 825260 826465 C 1203 96.43 1350 accept 0 ALIGNMENT 919 Y12-12o09.q1k chr04 35 1103 822249 823331 F 1069 97.10 1328 accept 0 ALIGNMENT 0 Y12-12o10.q1k chr03 526 525 168593 168931 F 0 0.00 1334 reject_low 22 ALIGNMENT 257 Y12-12o10.q1k chr07 309 657 712205 712550 F 349 93.12 1334 reject_low 5 ALIGNMENT 250 Y12-12o10.q1k chr01 314 656 182614 182953 F 343 93.00 1334 reject_low 17 ALIGNMENT 0 Y12-12o10.q1k chr11 313 62 202630 202629 C 252 0.00 1334 reject_low 14 ALIGNMENT 258 Y12-12o10.q1k chr04 656 314 945949 946289 C 343 93.59 1334 reject_low 12 ALIGNMENT 0 Y12-12o10.q1k chr04 658 840 668432 668431 F 183 0.00 1334 reject_low 1 ALIGNMENT 0 Y12-12o10.q1k chr14 62 313 546739 546738 F 252 0.00 1334 reject_low 15 ALIGNMENT 77 Y12-12o10.q1k chr09 298 215 210661 210744 C 84 97.62 1334 reject_low 2 ALIGNMENT 0 Y12-12o10.q1k chr09 214 62 210745 210744 C 153 0.00 1334 reject_low 2 ALIGNMENT 259 Y12-12o10.q1k chr07 310 656 735983 736327 F 347 93.37 1334 reject_low 7 ALIGNMENT 0 Y12-12o10.q1k chr14 657 840 726575 726574 F 184 0.00 1334 reject_low 20 ALIGNMENT 0 Y12-12o10.q1k chr12 62 313 374000 373999 F 252 0.00 1334 reject_low 13 ALIGNMENT 0 Y12-12o10.q1k chr16 62 323 856551 856550 F 262 0.00 1334 reject_low 19 ALIGNMENT 330 Y12-12o10.q1k chr04 221 657 667999 668432 F 437 93.14 1334 reject_low 1 ALIGNMENT 0 Y12-12o10.q1k chr07 62 309 735983 735982 F 248 0.00 1334 reject_low 7 ALIGNMENT 0 Y12-12o10.q1k chr07 657 840 707538 707537 F 184 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-12o10.q1k chr04 62 312 1023130 1023129 F 251 0.00 1334 reject_low 11 ALIGNMENT 0 Y12-12o10.q1k chr05 313 62 434968 434967 C 252 0.00 1334 reject_low 4 ALIGNMENT 0 Y12-12o10.q1k chr07 62 313 707199 707198 F 252 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-12o10.q1k chr04 62 220 667999 667998 F 159 0.00 1334 reject_low 1 ALIGNMENT 791 Y12-12o10.q1k chr16 36 1058 880100 881137 F 1023 94.33 1334 accept 0 ALIGNMENT 0 Y12-12o10.q1k chr03 62 318 168389 168388 F 257 0.00 1334 reject_low 22 ALIGNMENT 267 Y12-12o10.q1k chr05 658 314 434625 434967 C 345 94.20 1334 reject_low 4 ALIGNMENT 0 Y12-12o10.q1k chr09 840 299 210662 210661 C 542 0.00 1334 reject_low 2 ALIGNMENT 0 Y12-12o10.q1k chr14 657 840 547078 547077 F 184 0.00 1334 reject_low 15 ALIGNMENT 0 Y12-12o10.q1k chr02 216 62 197578 197577 C 155 0.00 1334 reject_low 21 ALIGNMENT 0 Y12-12o10.q1k chr04 313 62 946290 946289 C 252 0.00 1334 reject_low 12 ALIGNMENT 0 Y12-12o10.q1k chr15 62 304 854264 854263 F 243 0.00 1334 reject_low 3 ALIGNMENT 0 Y12-12o10.q1k chr09 658 840 210645 210644 F 183 0.00 1334 reject_low 6 ALIGNMENT 0 Y12-12o10.q1k chr16 657 840 856881 856880 F 184 0.00 1334 reject_low 19 ALIGNMENT 249 Y12-12o10.q1k chr16 324 656 856551 856881 F 333 93.39 1334 reject_low 19 ALIGNMENT 0 Y12-12o10.q1k chr01 657 840 182953 182952 F 184 0.00 1334 reject_low 17 ALIGNMENT 254 Y12-12o10.q1k chr12 314 656 374000 374339 F 343 93.29 1334 reject_low 13 ALIGNMENT 0 Y12-12o10.q1k chr04 840 657 945950 945949 C 184 0.00 1334 reject_low 12 ALIGNMENT 0 Y12-12o10.q1k chr05 840 659 434626 434625 C 182 0.00 1334 reject_low 4 ALIGNMENT 0 Y12-12o10.q1k chr09 62 308 210300 210299 F 247 0.00 1334 reject_low 6 ALIGNMENT 0 Y12-12o10.q1k chr04 657 840 1023471 1023470 F 184 0.00 1334 reject_low 11 ALIGNMENT 252 Y12-12o10.q1k chr11 657 314 202289 202629 C 344 93.02 1334 reject_low 14 ALIGNMENT 0 Y12-12o10.q1k chr08 313 62 146665 146664 C 252 0.00 1334 reject_low 10 ALIGNMENT 0 Y12-12o10.q1k chr05 840 657 249930 249929 C 184 0.00 1334 reject_low 9 ALIGNMENT 0 Y12-12o10.q1k chr07 657 840 736327 736326 F 184 0.00 1334 reject_low 7 ALIGNMENT 257 Y12-12o10.q1k chr09 309 657 210300 210645 F 349 93.12 1334 reject_low 6 ALIGNMENT 0 Y12-12o10.q1k chr14 62 313 726235 726234 F 252 0.00 1334 reject_low 20 ALIGNMENT 250 Y12-12o10.q1k chr07 314 656 707199 707538 F 343 93.00 1334 reject_low 18 ALIGNMENT 0 Y12-12o10.q1k chr07 658 840 712550 712549 F 183 0.00 1334 reject_low 5 ALIGNMENT 963 Y12-12o10.p1k chr16 1184 26 883066 884241 C 1159 95.86 1363 accept 0 ALIGNMENT 147 Y12-12o10.q1k chr03 319 528 168389 168595 F 210 91.90 1334|0,3 reject_low 22 ALIGNMENT 0 Y12-12o10.q1k chr05 313 62 250270 250269 C 252 0.00 1334 reject_low 9 ALIGNMENT 0 Y12-12o10.q1k chr07 62 308 712205 712204 F 247 0.00 1334 reject_low 5 ALIGNMENT 0 Y12-12o10.q1k chr12 657 840 374339 374338 F 184 0.00 1334 reject_low 13 ALIGNMENT 0 Y12-12o10.q1k chr15 658 840 854613 854612 F 183 0.00 1334 reject_low 3 ALIGNMENT 257 Y12-12o10.q1k chr04 313 656 1023130 1023471 F 344 93.31 1334 reject_low 11 ALIGNMENT 0 Y12-12o10.q1k chr07 313 62 319766 319765 C 252 0.00 1334 reject_low 16 ALIGNMENT 258 Y12-12o10.q1k chr15 305 657 854264 854613 F 353 92.63 1334 reject_low 3 ALIGNMENT 0 Y12-12o10.q1k chr01 62 313 182614 182613 F 252 0.00 1334 reject_low 17 ALIGNMENT 0 Y12-12o10.q1k chr11 840 658 202290 202289 C 183 0.00 1334 reject_low 14 ALIGNMENT 0 Y12-12o10.q1k chr08 840 657 146325 146324 C 184 0.00 1334 reject_low 10 ALIGNMENT 251 Y12-12o10.q1k chr07 656 314 319426 319765 C 343 93.00 1334 reject_low 16 ALIGNMENT 262 Y12-12o10.q1k chr02 314 656 197717 198057 F 343 93.88 1334 reject_low 8 ALIGNMENT 261 Y12-12o10.q1k chr08 656 314 146324 146664 C 343 93.88 1334 reject_low 10 ALIGNMENT 243 Y12-12o10.q1k chr14 314 656 726235 726575 F 343 92.13 1334 reject_low 20 ALIGNMENT 0 Y12-12o10.q1k chr02 62 313 197717 197716 F 252 0.00 1334 reject_low 8 ALIGNMENT 0 Y12-12o10.q1k chr03 657 840 169063 169062 F 184 0.00 1334 reject_low 22 ALIGNMENT 253 Y12-12o10.q1k chr14 314 656 546739 547078 F 343 93.29 1334 reject_low 15 ALIGNMENT 0 Y12-12o10.q1k chr02 840 257 197539 197538 C 584 0.00 1334 reject_low 21 ALIGNMENT 262 Y12-12o10.q1k chr05 656 314 249929 250269 C 343 93.88 1334 reject_low 9 ALIGNMENT 0 Y12-12o10.q1k chr02 657 840 198057 198056 F 184 0.00 1334 reject_low 8 ALIGNMENT 0 Y12-12o10.q1k chr07 840 657 319427 319426 C 184 0.00 1334 reject_low 16 ALIGNMENT 37 Y12-12o10.q1k chr02 256 217 197538 197577 C 40 97.50 1334 reject_low 21 ALIGNMENT 116 Y12-12o10.q1k chr03 523 656 168929 169063 F 134 97.01 1334|3,0 reject_low 22 ALIGNMENT 493 Y12-12o11.p1k chr12 570 1192 489754 490393 F 623 94.06 1335 reject_low 2 ALIGNMENT 926 Y12-12o11.p1k chr12 20 1192 460347 461562 F 1173 94.12 1335 accept 0 ALIGNMENT 0 Y12-12o11.p1k chr12 62 569 489754 489753 F 508 0.00 1335 reject_low 2 ALIGNMENT 782 Y12-12o11.p1k chr12 222 1192 451419 452425 F 971 94.54 1335 reject_low 1 ALIGNMENT 791 Y12-12o11.q1k chr12 1219 175 464477 465534 C 1045 92.06 1222 accept 0 ALIGNMENT 791 Y12-12o11.q1k chr12 1219 175 455340 456397 C 1045 92.06 1222 reject_low 1 ALIGNMENT 0 Y12-12o11.p1k chr12 62 221 451419 451418 F 160 0.00 1335 reject_low 1 ALIGNMENT 1006 Y12-12o12.p1k chr12 17 1206 398493 399681 F 1190 95.55 1399 accept 0 ALIGNMENT 864 Y12-12o12.q1k chr12 1139 31 401974 403122 C 1109 94.41 1167 accept 0 ALIGNMENT 997 Y12-12o13.p1k chr08 1224 22 323007 324221 C 1203 95.51 1355 accept 0 ALIGNMENT 968 Y12-12o13.q1k chr08 37 1160 318327 319456 F 1124 96.09 1332 accept 0 ALIGNMENT 0 Y12-12o14.p1k chr16 149 62 654843 654842 C 88 0.00 1341 reject_low 1 ALIGNMENT 708 Y12-12o14.q1k chr10 34 982 604238 605215 F 949 93.26 1221 accept 0 ALIGNMENT 0 Y12-12o14.p1k chr16 842 466 654528 654527 C 377 0.00 1341 reject_low 1 ALIGNMENT 190 Y12-12o14.p1k chr16 465 150 654527 654842 C 316 87.34 1341 reject_low 1 ALIGNMENT 932 Y12-12o14.p1k chr10 1074 25 607839 608899 C 1050 97.81 1341 accept 0 ALIGNMENT 1015 Y12-12o15.p1k chr07 20 1198 898483 899674 F 1179 96.18 1349 accept 0 ALIGNMENT 1003 Y12-12o15.q1k chr07 1162 31 901761 902886 C 1132 97.26 1247 accept 0 ALIGNMENT 1073 Y12-12o17.p1k chr12 1200 19 331899 333088 C 1182 97.38 1360 accept 0 ALIGNMENT 0 Y12-12o18.q1k chr11 799 890 36616 36615 F 92 0.00 1350 reject_low 1 ALIGNMENT 1062 Y12-12o18.q1k chr02 34 1246 133134 134341 F 1213 96.78 1350 accept 0 ALIGNMENT 960 Y12-12o18.p1k chr02 1098 24 135521 136605 C 1075 97.30 1334 accept 0 ALIGNMENT 0 Y12-12o18.q1k chr11 62 766 36585 36584 F 705 0.00 1350 reject_low 1 ALIGNMENT 22 Y12-12o18.q1k chr11 767 798 36585 36616 F 32 96.88 1350 reject_low 1 ALIGNMENT 1018 Y12-12o20.p1k chr04 1270 31 1047636 1048874 C 1240 95.08 1387 accept 0 ALIGNMENT 1053 Y12-12o21.p1k chr15 20 1228 377806 379016 F 1209 96.11 1376 accept 0 ALIGNMENT 1011 Y12-12o21.q1k chr15 1201 38 380454 381621 C 1164 96.65 1231 accept 0 ALIGNMENT 942 Y12-12o22.p1k chr11 20 1135 68146 69271 F 1116 95.34 1362 accept 0 ALIGNMENT 1058 Y12-12o22.q1k chr11 1254 32 71103 72316 C 1223 96.65 1262 accept 0 ALIGNMENT 978 Y12-12o23.q1k chr10 1193 42 516661 517806 C 1152 96.27 1242 accept 0 ALIGNMENT 0 Y12-12o23.q1k chr03 122 876 149988 149987 F 755 0.00 1242 reject_low 2 ALIGNMENT 76 Y12-12o23.q1k chr16 142 50 338827 338918 C 93 94.62 1242 reject_low 1 ALIGNMENT 0 Y12-12o23.q1k chr15 123 876 710273 710272 F 754 0.00 1242 reject_low 4 ALIGNMENT 0 Y12-12o23.q1k chr05 123 876 100205 100204 F 754 0.00 1242 reject_low 3 ALIGNMENT 71 Y12-12o23.q1k chr15 50 122 710201 710273 F 73 100.00 1242 reject_low 4 ALIGNMENT 0 Y12-12o23.q1k chr16 876 143 338828 338827 C 734 0.00 1242 reject_low 1 ALIGNMENT 1005 Y12-12o23.p1k chr10 22 1228 512989 514223 F 1207 96.27 1257 accept 0 ALIGNMENT 73 Y12-12o23.q1k chr05 48 122 100131 100205 F 75 100.00 1242 reject_low 3 ALIGNMENT 71 Y12-12o23.q1k chr03 46 121 149913 149988 F 76 98.68 1242 reject_low 2 ALIGNMENT 741 Y12-12p01.q1k chr07 963 31 832615 833533 C 933 95.18 1394 accept 0 ALIGNMENT 0 Y12-12p01.p1k chr13 453 877 747964 747963 F 425 0.00 1374 reject_low 10 ALIGNMENT 97 Y12-12p01.p1k chr07 467 371 405456 405552 C 97 100.00 1374 reject_low 1 ALIGNMENT 0 Y12-12p01.p1k chr10 877 467 355275 355274 C 411 0.00 1374 reject_low 5 ALIGNMENT 0 Y12-12p01.p1k chr07 370 62 405553 405552 C 309 0.00 1374 reject_low 1 ALIGNMENT 0 Y12-12p01.p1k chr10 471 877 374513 374512 F 407 0.00 1374 reject_low 3 ALIGNMENT 0 Y12-12p01.p1k chr11 62 372 162486 162485 F 311 0.00 1374 reject_low 7 ALIGNMENT 0 Y12-12p01.p1k chr13 62 370 131817 131816 F 309 0.00 1374 reject_low 8 ALIGNMENT 0 Y12-12p01.p1k chr10 370 62 355370 355369 C 309 0.00 1374 reject_low 5 ALIGNMENT 81 Y12-12p01.p1k chr11 373 468 162486 162581 F 96 94.79 1374 reject_low 7 ALIGNMENT 0 Y12-12p01.p1k chr10 62 370 374414 374413 F 309 0.00 1374 reject_low 3 ALIGNMENT 0 Y12-12p01.p1k chr02 877 471 405853 405852 C 407 0.00 1374 reject_low 2 ALIGNMENT 93 Y12-12p01.p1k chr10 466 371 355274 355369 C 96 98.96 1374 reject_low 5 ALIGNMENT 0 Y12-12p01.p1k chr07 877 453 736344 736343 C 425 0.00 1374 reject_low 4 ALIGNMENT 0 Y12-12p01.p1k chr05 877 451 138667 138666 C 427 0.00 1374 reject_low 9 ALIGNMENT 79 Y12-12p01.p1k chr13 371 452 131817 131898 F 82 98.78 1374 reject_low 8 ALIGNMENT 86 Y12-12p01.p1k chr04 465 371 568864 568958 C 95 96.84 1374 reject_low 6 ALIGNMENT 77 Y12-12p01.p1k chr13 373 452 747885 747964 F 80 98.75 1374 reject_low 10 ALIGNMENT 0 Y12-12p01.p1k chr13 453 877 131898 131897 F 425 0.00 1374 reject_low 8 ALIGNMENT 0 Y12-12p01.p1k chr07 877 468 405457 405456 C 410 0.00 1374 reject_low 1 ALIGNMENT 0 Y12-12p01.p1k chr13 62 372 747885 747884 F 311 0.00 1374 reject_low 10 ALIGNMENT 1038 Y12-12p01.p1k chr07 18 1215 828368 829572 F 1198 96.91 1374 accept 0 ALIGNMENT 88 Y12-12p01.p1k chr02 470 371 405852 405951 C 100 96.00 1374 reject_low 2 ALIGNMENT 77 Y12-12p01.p1k chr05 450 371 138666 138745 C 80 98.75 1374 reject_low 9 ALIGNMENT 88 Y12-12p01.p1k chr10 371 470 374414 374513 F 100 96.00 1374 reject_low 3 ALIGNMENT 0 Y12-12p01.p1k chr11 469 877 162581 162580 F 409 0.00 1374 reject_low 7 ALIGNMENT 0 Y12-12p01.p1k chr07 362 62 736433 736432 C 301 0.00 1374 reject_low 4 ALIGNMENT 0 Y12-12p01.p1k chr04 877 466 568865 568864 C 412 0.00 1374 reject_low 6 ALIGNMENT 0 Y12-12p01.p1k chr02 370 62 405952 405951 C 309 0.00 1374 reject_low 2 ALIGNMENT 0 Y12-12p01.p1k chr05 370 62 138746 138745 C 309 0.00 1374 reject_low 9 ALIGNMENT 0 Y12-12p01.p1k chr04 370 62 568959 568958 C 309 0.00 1374 reject_low 6 ALIGNMENT 78 Y12-12p01.p1k chr07 452 363 736343 736432 C 90 95.56 1374 reject_low 4 ALIGNMENT 800 Y12-12p02.q1k chr03 909 32 260052 260928 C 878 97.72 1302 accept 0 ALIGNMENT 1011 Y12-12p02.p1k chr03 17 1198 255499 256675 F 1182 97.21 1381 accept 0 ALIGNMENT 987 Y12-12p04.q1k chr07 34 1228 738930 740133 F 1195 95.06 1233 accept 0 ALIGNMENT 0 Y12-12p04.q1k chr09 895 314 183429 183428 C 582 0.00 1233 reject_low 12 ALIGNMENT 0 Y12-12p04.q1k chr14 895 315 569860 569859 C 581 0.00 1233 reject_low 7 ALIGNMENT 80 Y12-12p04.q1k chr04 314 226 667992 668080 C 89 96.63 1233 reject_low 3 ALIGNMENT 0 Y12-12p04.q1k chr05 223 62 443279 443278 C 162 0.00 1233 reject_low 2 ALIGNMENT 0 Y12-12p04.q1k chr14 62 230 602313 602312 F 169 0.00 1233 reject_low 8 ALIGNMENT 77 Y12-12p04.q1k chr09 313 231 183428 183510 C 83 97.59 1233 reject_low 12 ALIGNMENT 0 Y12-12p04.q1k chr14 315 895 602395 602394 F 581 0.00 1233 reject_low 8 ALIGNMENT 79 Y12-12p04.q1k chr14 314 231 569859 569941 C 84 98.81 1233 reject_low 7 ALIGNMENT 0 Y12-12p04.q1k chr02 312 895 197577 197576 F 584 0.00 1233 reject_low 9 ALIGNMENT 79 Y12-12p04.q1k chr02 230 311 197496 197577 F 82 98.78 1233 reject_low 9 ALIGNMENT 77 Y12-12p04.q1k chr09 231 313 210662 210744 F 83 97.59 1233 reject_low 13 ALIGNMENT 0 Y12-12p04.q1k chr12 230 62 1052142 1052141 C 169 0.00 1233 reject_low 10 ALIGNMENT 0 Y12-12p04.q1k chr16 895 313 880285 880284 C 583 0.00 1233 reject_low 4 ALIGNMENT 0 Y12-12p04.q1k chr12 895 315 1052059 1052058 C 581 0.00 1233 reject_low 10 ALIGNMENT 80 Y12-12p04.q1k chr12 231 313 734804 734886 F 83 98.80 1233 reject_low 5 ALIGNMENT 0 Y12-12p04.q1k chr16 62 230 819525 819524 F 169 0.00 1233 reject_low 6 ALIGNMENT 994 Y12-12p04.p1k chr07 1173 18 743619 744791 C 1156 96.80 1437 accept 0 ALIGNMENT 0 Y12-12p04.q1k chr09 314 895 210744 210743 F 582 0.00 1233 reject_low 13 ALIGNMENT 0 Y12-12p04.q1k chr12 314 895 734886 734885 F 582 0.00 1233 reject_low 5 ALIGNMENT 0 Y12-12p04.q1k chr16 230 62 880366 880365 C 169 0.00 1233 reject_low 4 ALIGNMENT 79 Y12-12p04.q1k chr14 231 314 602313 602395 F 84 98.81 1233 reject_low 8 ALIGNMENT 0 Y12-12p04.q1k chr07 895 740 739613 739612 C 156 0.00 1233 reject_low 1 ALIGNMENT 0 Y12-12p04.q1k chr05 895 316 443188 443187 C 580 0.00 1233 reject_low 2 ALIGNMENT 0 Y12-12p04.q1k chr14 230 62 569942 569941 C 169 0.00 1233 reject_low 7 ALIGNMENT 0 Y12-12p04.q1k chr09 62 230 210662 210661 F 169 0.00 1233 reject_low 13 ALIGNMENT 0 Y12-12p04.q1k chr02 62 229 197496 197495 F 168 0.00 1233 reject_low 9 ALIGNMENT 77 Y12-12p04.q1k chr05 312 230 551272 551354 C 83 97.59 1233 reject_low 11 ALIGNMENT 80 Y12-12p04.q1k chr05 315 224 443187 443278 C 92 95.65 1233 reject_low 2 ALIGNMENT 0 Y12-12p04.q1k chr04 895 315 667993 667992 C 581 0.00 1233 reject_low 3 ALIGNMENT 0 Y12-12p04.q1k chr09 230 62 183511 183510 C 169 0.00 1233 reject_low 12 ALIGNMENT 0 Y12-12p04.q1k chr12 62 230 734804 734803 F 169 0.00 1233 reject_low 5 ALIGNMENT 80 Y12-12p04.q1k chr16 231 313 819525 819607 F 83 98.80 1233 reject_low 6 ALIGNMENT 0 Y12-12p04.q1k chr07 711 62 739640 739639 C 650 0.00 1233 reject_low 1 ALIGNMENT 25 Y12-12p04.q1k chr07 739 712 739612 739639 C 28 96.43 1233 reject_low 1 ALIGNMENT 0 Y12-12p04.q1k chr04 225 62 668081 668080 C 164 0.00 1233 reject_low 3 ALIGNMENT 77 Y12-12p04.q1k chr12 314 231 1052058 1052141 C 84 97.62 1233 reject_low 10 ALIGNMENT 82 Y12-12p04.q1k chr16 312 231 880284 880365 C 82 100.00 1233 reject_low 4 ALIGNMENT 0 Y12-12p04.q1k chr16 314 895 819607 819606 F 582 0.00 1233 reject_low 6 ALIGNMENT 0 Y12-12p04.q1k chr05 895 313 551273 551272 C 583 0.00 1233 reject_low 11 ALIGNMENT 0 Y12-12p04.q1k chr05 229 62 551355 551354 C 168 0.00 1233 reject_low 11 ALIGNMENT 1008 Y12-12p05.q1k chr07 31 1183 424949 426102 F 1153 96.53 1263 accept 0 ALIGNMENT 992 Y12-12p05.p1k chr07 1208 28 427896 429081 C 1181 95.85 1381 accept 0 ALIGNMENT 79 Y12-12p06.q1k chr13 135 29 372719 372824 C 107 93.46 1287 reject_low 19 ALIGNMENT 0 Y12-12p06.q1k chr06 62 86 143867 143866 F 25 0.00 1287 reject_low 27 ALIGNMENT 94 Y12-12p06.q1k chr01 158 29 160239 160367 C 130 93.08 1287 reject_low 5 ALIGNMENT 54 Y12-12p06.q1k chr06 35 148 143746 143856 F 114 85.09 1287 reject_low 26 ALIGNMENT 94 Y12-12p06.q1k chr16 29 158 56660 56788 F 130 93.08 1287 reject_low 8 ALIGNMENT 0 Y12-12p06.q1k chr06 149 870 138229 138228 F 722 0.00 1287 reject_low 25 ALIGNMENT 0 Y12-12p06.q1k chr14 159 870 519497 519496 F 712 0.00 1287 reject_low 17 ALIGNMENT 0 Y12-12p06.q1k chr08 870 136 543634 543633 C 735 0.00 1287 reject_low 18 ALIGNMENT 68 Y12-12p06.q1k chr04 135 35 645520 645619 C 101 91.09 1287 reject_low 24 ALIGNMENT 0 Y12-12p06.q1k chr06 159 870 143937 143936 F 712 0.00 1287 reject_low 27 ALIGNMENT 82 Y12-12p06.q1k chr03 29 167 169411 169548 F 139 88.49 1287 reject_low 1 ALIGNMENT 39 Y12-12p06.q1k chr06 87 158 143867 143937 F 72 88.89 1287 reject_low 27 ALIGNMENT 0 Y12-12p06.q1k chr16 136 870 850313 850312 F 735 0.00 1287 reject_low 22 ALIGNMENT 79 Y12-12p06.q1k chr16 29 135 850208 850313 F 107 93.46 1287 reject_low 22 ALIGNMENT 79 Y12-12p06.q1k chr08 135 29 543633 543738 C 107 93.46 1287 reject_low 18 ALIGNMENT 0 Y12-12p06.q1k chr15 159 870 123627 123626 F 712 0.00 1287 reject_low 7 ALIGNMENT 83 Y12-12p06.q1k chr14 48 158 519388 519497 F 111 93.69 1287 reject_low 17 ALIGNMENT 0 Y12-12p06.q1k chr15 136 870 600711 600710 F 735 0.00 1287 reject_low 21 ALIGNMENT 79 Y12-12p06.q1k chr15 29 135 600606 600711 F 107 93.46 1287 reject_low 21 ALIGNMENT 0 Y12-12p06.q1k chr07 159 870 876284 876283 F 712 0.00 1287 reject_low 12 ALIGNMENT 0 Y12-12p06.q1k chr14 160 870 525064 525063 F 711 0.00 1287 reject_low 15 ALIGNMENT 94 Y12-12p06.q1k chr01 158 29 165827 165955 C 130 93.08 1287 reject_low 6 ALIGNMENT 0 Y12-12p06.q1k chr13 870 159 362587 362586 C 712 0.00 1287 reject_low 13 ALIGNMENT 0 Y12-12p06.q1k chr14 870 160 96610 96609 C 711 0.00 1287 reject_low 3 ALIGNMENT 79 Y12-12p06.q1k chr13 135 29 378307 378412 C 107 93.46 1287 reject_low 20 ALIGNMENT 0 Y12-12p06.q1k chr15 870 160 980255 980254 C 711 0.00 1287 reject_low 4 ALIGNMENT 0 Y12-12p06.q1k chr16 164 870 560814 560813 F 707 0.00 1287 reject_low 2 ALIGNMENT 0 Y12-12p06.q1k chr16 159 870 56788 56787 F 712 0.00 1287 reject_low 8 ALIGNMENT 84 Y12-12p06.q1k chr14 48 159 524954 525064 F 112 93.75 1287 reject_low 15 ALIGNMENT 85 Y12-12p06.q1k chr15 158 29 113293 113421 C 130 90.77 1287 reject_low 14 ALIGNMENT 0 Y12-12p06.q1k chr10 870 155 354455 354454 C 716 0.00 1287 reject_low 9 ALIGNMENT 0 Y12-12p06.q1k chr01 870 159 160240 160239 C 712 0.00 1287 reject_low 5 ALIGNMENT 95 Y12-12p06.q1k chr16 29 163 560681 560814 F 135 92.59 1287 reject_low 2 ALIGNMENT 923 Y12-12p06.q1k chr12 1173 29 91048 92177 C 1145 96.07 1287 accept 0 ALIGNMENT 0 Y12-12p06.q1k chr01 870 159 165828 165827 C 712 0.00 1287 reject_low 6 ALIGNMENT 93 Y12-12p06.q1k chr10 154 29 354454 354578 C 126 93.65 1287 reject_low 9 ALIGNMENT 0 Y12-12p06.q1k chr03 870 159 168596 168595 C 712 0.00 1287 reject_low 16 ALIGNMENT 0 Y12-12p06.q1k chr03 168 870 169548 169547 F 703 0.00 1287 reject_low 1 ALIGNMENT 0 Y12-12p06.q1k chr13 870 136 372720 372719 C 735 0.00 1287 reject_low 19 ALIGNMENT 90 Y12-12p06.q1k chr07 29 158 876155 876284 F 130 92.31 1287 reject_low 12 ALIGNMENT 0 Y12-12p06.q1k chr06 149 870 143856 143855 F 722 0.00 1287 reject_low 26 ALIGNMENT 0 Y12-12p06.q1k chr12 870 160 818073 818072 C 711 0.00 1287 reject_low 10 ALIGNMENT 0 Y12-12p06.q1k chr13 870 160 357004 357003 C 711 0.00 1287 reject_low 11 ALIGNMENT 0 Y12-12p06.q1k chr04 870 136 645521 645520 C 735 0.00 1287 reject_low 24 ALIGNMENT 88 Y12-12p06.q1k chr13 158 29 362586 362714 C 130 91.54 1287 reject_low 13 ALIGNMENT 94 Y12-12p06.q1k chr15 29 158 123499 123627 F 130 93.08 1287 reject_low 7 ALIGNMENT 54 Y12-12p06.q1k chr06 35 148 138119 138229 F 114 85.09 1287 reject_low 25 ALIGNMENT 0 Y12-12p06.q1k chr13 870 136 378308 378307 C 735 0.00 1287 reject_low 20 ALIGNMENT 0 Y12-12p06.q1k chr15 870 159 113294 113293 C 712 0.00 1287 reject_low 14 ALIGNMENT 0 Y12-12p06.q1k chr14 870 150 632010 632009 C 721 0.00 1287 reject_low 23 ALIGNMENT 89 Y12-12p06.q1k chr12 159 29 818072 818201 C 131 91.60 1287 reject_low 10 ALIGNMENT 83 Y12-12p06.q1k chr03 158 35 168595 168717 C 124 91.13 1287 reject_low 16 ALIGNMENT 95 Y12-12p06.q1k chr15 159 29 980254 980383 C 131 93.13 1287 reject_low 4 ALIGNMENT 89 Y12-12p06.q1k chr13 159 29 357003 357132 C 131 91.60 1287 reject_low 11 ALIGNMENT 1041 Y12-12p06.p1k chr12 22 1322 87865 89180 F 1301 94.62 1392 accept 0 ALIGNMENT 80 Y12-12p06.q1k chr14 149 43 632009 632114 C 107 93.46 1287 reject_low 23 ALIGNMENT 95 Y12-12p06.q1k chr14 159 29 96609 96738 C 131 93.13 1287 reject_low 3 ALIGNMENT 924 Y12-12p07.p1k chr16 19 1064 86153 87210 F 1046 97.04 1371 accept 0 ALIGNMENT 869 Y12-12p07.q1k chr16 1196 30 89908 91081 C 1167 93.40 1336 accept 0 ALIGNMENT 0 Y12-12p08.p1k chr01 881 905 182948 182947 F 25 0.00 1418 reject_low 12 ALIGNMENT 186 Y12-12p08.p1k chr09 545 880 324387 324727 F 336 86.61 1418 reject_low 10 ALIGNMENT 204 Y12-12p08.p1k chr05 880 549 434632 434965 C 332 88.86 1418 reject_low 4 ALIGNMENT 190 Y12-12p08.p1k chr14 549 880 546741 547073 F 332 87.65 1418 reject_low 11 ALIGNMENT 187 Y12-12p08.p1k chr11 880 549 202295 202627 C 332 87.35 1418 reject_low 17 ALIGNMENT 0 Y12-12p08.p1k chr12 857 905 793871 793870 F 49 0.00 1418 reject_low 21 ALIGNMENT 0 Y12-12p08.p1k chr07 881 905 707533 707532 F 25 0.00 1418 reject_low 14 ALIGNMENT 197 Y12-12p08.p1k chr08 880 549 146329 146662 C 332 87.95 1418 reject_low 9 ALIGNMENT 203 Y12-12p08.p1k chr05 890 542 249924 250274 C 349 87.97 1418 reject_low 2 ALIGNMENT 0 Y12-12p08.p1k chr16 881 905 880717 880716 F 25 0.00 1418 reject_low 6 ALIGNMENT 0 Y12-12p08.p1k chr01 62 548 182616 182615 F 487 0.00 1418 reject_low 12 ALIGNMENT 0 Y12-12p08.p1k chr14 881 905 547073 547072 F 25 0.00 1418 reject_low 11 ALIGNMENT 0 Y12-12p08.p1k chr02 62 548 197719 197718 F 487 0.00 1418 reject_low 7 ALIGNMENT 0 Y12-12p08.p1k chr11 905 881 202296 202295 C 25 0.00 1418 reject_low 17 ALIGNMENT 164 Y12-12p08.p1k chr07 549 819 401621 401894 F 271 88.93 1418 reject_low 19 ALIGNMENT 939 Y12-12p08.q1k chr12 33 1125 164095 165191 F 1093 95.70 1322 accept 0 ALIGNMENT 0 Y12-12p08.p1k chr09 62 548 205219 205218 F 487 0.00 1418 reject_low 16 ALIGNMENT 0 Y12-12p08.p1k chr07 820 905 401894 401893 F 86 0.00 1418 reject_low 19 ALIGNMENT 0 Y12-12p08.p1k chr07 880 905 736321 736320 F 26 0.00 1418 reject_low 3 ALIGNMENT 0 Y12-12p08.p1k chr05 905 891 249925 249924 C 15 0.00 1418 reject_low 2 ALIGNMENT 187 Y12-12p08.p1k chr07 549 880 712212 712544 F 332 87.35 1418 reject_low 15 ALIGNMENT 0 Y12-12p08.p1k chr14 62 548 726237 726236 F 487 0.00 1418 reject_low 18 ALIGNMENT 0 Y12-12p08.p1k chr12 62 550 793556 793555 F 489 0.00 1418 reject_low 21 ALIGNMENT 908 Y12-12p08.p1k chr12 1170 17 167747 168935 C 1154 94.02 1418 accept 0 ALIGNMENT 0 Y12-12p08.p1k chr02 881 905 198052 198051 F 25 0.00 1418 reject_low 7 ALIGNMENT 0 Y12-12p08.p1k chr04 625 62 645497 645496 C 564 0.00 1418 reject_low 20 ALIGNMENT 0 Y12-12p08.p1k chr09 881 905 205551 205550 F 25 0.00 1418 reject_low 16 ALIGNMENT 0 Y12-12p08.p1k chr08 548 62 146663 146662 C 487 0.00 1418 reject_low 9 ALIGNMENT 0 Y12-12p08.p1k chr14 62 548 546741 546740 F 487 0.00 1418 reject_low 11 ALIGNMENT 201 Y12-12p08.p1k chr16 549 880 880384 880717 F 332 88.55 1418 reject_low 6 ALIGNMENT 187 Y12-12p08.p1k chr07 549 880 707201 707533 F 332 87.35 1418 reject_low 14 ALIGNMENT 0 Y12-12p08.p1k chr07 62 548 401621 401620 F 487 0.00 1418 reject_low 19 ALIGNMENT 0 Y12-12p08.p1k chr09 881 905 324727 324726 F 25 0.00 1418 reject_low 10 ALIGNMENT 0 Y12-12p08.p1k chr07 62 539 735980 735979 F 478 0.00 1418 reject_low 3 ALIGNMENT 0 Y12-12p08.p1k chr04 881 905 668426 668425 F 25 0.00 1418 reject_low 8 ALIGNMENT 0 Y12-12p08.p1k chr07 62 548 707201 707200 F 487 0.00 1418 reject_low 14 ALIGNMENT 0 Y12-12p08.p1k chr05 548 62 434966 434965 C 487 0.00 1418 reject_low 4 ALIGNMENT 187 Y12-12p08.p1k chr09 549 880 205219 205551 F 332 87.35 1418 reject_low 16 ALIGNMENT 0 Y12-12p08.p1k chr07 881 905 712544 712543 F 25 0.00 1418 reject_low 15 ALIGNMENT 0 Y12-12p08.p1k chr04 905 881 945955 945954 C 25 0.00 1418 reject_low 5 ALIGNMENT 201 Y12-12p08.p1k chr04 880 549 945954 946287 C 332 88.55 1418 reject_low 5 ALIGNMENT 187 Y12-12p08.p1k chr07 880 549 319431 319763 C 332 87.35 1418 reject_low 13 ALIGNMENT 0 Y12-12p08.p1k chr16 62 548 880384 880383 F 487 0.00 1418 reject_low 6 ALIGNMENT 0 Y12-12p08.p1k chr04 62 548 668093 668092 F 487 0.00 1418 reject_low 8 ALIGNMENT 0 Y12-12p08.p1k chr07 905 881 319432 319431 C 25 0.00 1418 reject_low 13 ALIGNMENT 0 Y12-12p08.p1k chr08 905 881 146330 146329 C 25 0.00 1418 reject_low 9 ALIGNMENT 198 Y12-12p08.p1k chr04 549 880 668093 668426 F 332 88.25 1418 reject_low 8 ALIGNMENT 0 Y12-12p08.p1k chr09 62 544 324387 324386 F 483 0.00 1418 reject_low 10 ALIGNMENT 0 Y12-12p08.p1k chr04 548 62 946288 946287 C 487 0.00 1418 reject_low 5 ALIGNMENT 0 Y12-12p08.p1k chr07 548 62 319764 319763 C 487 0.00 1418 reject_low 13 ALIGNMENT 58 Y12-12p08.p1k chr01 994 902 182507 182598 C 93 84.95 1418 reject_low 1 ALIGNMENT 198 Y12-12p08.p1k chr02 549 880 197719 198052 F 332 88.25 1418 reject_low 7 ALIGNMENT 199 Y12-12p08.p1k chr07 540 879 735980 736321 F 340 87.94 1418 reject_low 3 ALIGNMENT 138 Y12-12p08.p1k chr12 551 856 793556 793871 F 306 83.66 1418 reject_low 21 ALIGNMENT 139 Y12-12p08.p1k chr04 880 626 645240 645496 C 255 86.27 1418 reject_low 20 ALIGNMENT 0 Y12-12p08.p1k chr07 62 548 712212 712211 F 487 0.00 1418 reject_low 15 ALIGNMENT 0 Y12-12p08.p1k chr04 905 881 645241 645240 C 25 0.00 1418 reject_low 20 ALIGNMENT 0 Y12-12p08.p1k chr05 541 62 250275 250274 C 480 0.00 1418 reject_low 2 ALIGNMENT 0 Y12-12p08.p1k chr01 901 62 182599 182598 C 840 0.00 1418 reject_low 1 ALIGNMENT 0 Y12-12p08.p1k chr11 548 62 202628 202627 C 487 0.00 1418 reject_low 17 ALIGNMENT 187 Y12-12p08.p1k chr01 549 880 182616 182948 F 332 87.35 1418 reject_low 12 ALIGNMENT 183 Y12-12p08.p1k chr14 549 880 726237 726570 F 332 86.75 1418 reject_low 18 ALIGNMENT 0 Y12-12p08.p1k chr05 905 881 434633 434632 C 25 0.00 1418 reject_low 4 ALIGNMENT 0 Y12-12p08.p1k chr14 881 905 726570 726569 F 25 0.00 1418 reject_low 18 ALIGNMENT 0 Y12-12p09.p1k chr06 491 871 92422 92421 F 381 0.00 1426 reject_low 7 ALIGNMENT 0 Y12-12p09.p1k chr06 422 871 92593 92592 F 450 0.00 1426 reject_low 6 ALIGNMENT 0 Y12-12p09.p1k chr06 245 871 92596 92595 F 627 0.00 1426 reject_low 5 ALIGNMENT 74 Y12-12p09.p1k chr06 174 280 92436 92542 F 107 90.65 1426 reject_low 4 ALIGNMENT 0 Y12-12p09.p1k chr06 448 871 92589 92588 F 424 0.00 1426 reject_low 3 ALIGNMENT 55 Y12-12p09.p1k chr06 162 244 92514 92596 F 83 90.36 1426 reject_low 5 ALIGNMENT 28 Y12-12p09.p1k chr06 342 507 92364 92529 F 166 73.49 1426 reject_low 10 ALIGNMENT 0 Y12-12p09.p1k chr06 281 871 92542 92541 F 591 0.00 1426 reject_low 4 ALIGNMENT 0 Y12-12p09.p1k chr06 491 871 92452 92451 F 381 0.00 1426 reject_low 8 ALIGNMENT 0 Y12-12p09.p1k chr06 461 871 92512 92511 F 411 0.00 1426 reject_low 9 ALIGNMENT 0 Y12-12p09.p1k chr06 62 281 92364 92363 F 220 0.00 1426 accept 0 ALIGNMENT 0 Y12-12p09.p1k chr06 395 871 92596 92595 F 477 0.00 1426 reject_low 1 ALIGNMENT 37 Y12-12p09.p1k chr06 402 490 92364 92452 F 89 82.02 1426 reject_low 8 ALIGNMENT 130 Y12-12p09.p1k chr06 174 358 92406 92590 F 185 91.35 1426 reject_low 2 ALIGNMENT 0 Y12-12p09.p1k chr06 298 871 92589 92588 F 574 0.00 1426 reject_low 11 ALIGNMENT 41 Y12-12p09.p1k chr06 384 460 92436 92512 F 77 85.71 1426 reject_low 9 ALIGNMENT 0 Y12-12p09.p1k chr06 62 401 92364 92363 F 340 0.00 1426 reject_low 8 ALIGNMENT 83 Y12-12p09.p1k chr06 229 447 92371 92589 F 219 80.37 1426 reject_low 3 ALIGNMENT 209 Y12-12p09.p1k chr06 17 394 92216 92596 F 378 86.77 1426 reject_low 1 ALIGNMENT 0 Y12-12p09.p1k chr06 269 871 92590 92589 F 603 0.00 1426 reject_low 12 ALIGNMENT 38 Y12-12p09.p1k chr06 432 490 92364 92422 F 59 89.83 1426 reject_low 7 ALIGNMENT 0 Y12-12p09.p1k chr06 62 173 92406 92405 F 112 0.00 1426 reject_low 2 ALIGNMENT 0 Y12-12p09.p1k chr06 62 431 92364 92363 F 370 0.00 1426 reject_low 7 ALIGNMENT 0 Y12-12p09.p1k chr06 508 871 92529 92528 F 364 0.00 1426 reject_low 10 ALIGNMENT 0 Y12-12p09.p1k chr06 62 341 92364 92363 F 280 0.00 1426 reject_low 10 ALIGNMENT 48 Y12-12p09.p1k chr06 204 421 92376 92593 F 218 75.23 1426 reject_low 6 ALIGNMENT 847 Y12-12p09.q1k chr06 1183 28 95258 96420 C 1156 92.39 1382 accept 0 ALIGNMENT 36 Y12-12p09.p1k chr06 174 297 92466 92589 F 124 77.42 1426 reject_low 11 ALIGNMENT 0 Y12-12p09.p1k chr06 62 161 92514 92513 F 100 0.00 1426 reject_low 5 ALIGNMENT 0 Y12-12p09.p1k chr06 62 203 92376 92375 F 142 0.00 1426 reject_low 6 ALIGNMENT 0 Y12-12p09.p1k chr06 62 228 92371 92370 F 167 0.00 1426 reject_low 3 ALIGNMENT 0 Y12-12p09.p1k chr06 359 871 92590 92589 F 513 0.00 1426 reject_low 2 ALIGNMENT 24 Y12-12p09.p1k chr06 234 268 92556 92590 F 35 91.43 1426 reject_low 12 ALIGNMENT 0 Y12-12p09.p1k chr06 62 173 92466 92465 F 112 0.00 1426 reject_low 11 ALIGNMENT 0 Y12-12p09.p1k chr06 62 173 92436 92435 F 112 0.00 1426 reject_low 4 ALIGNMENT 630 Y12-12p09.p1k chr06 282 1231 92364 93320 F 950 90.42 1426 accept 0 ALIGNMENT 0 Y12-12p09.p1k chr06 62 383 92436 92435 F 322 0.00 1426 reject_low 9 ALIGNMENT 0 Y12-12p09.p1k chr06 62 233 92556 92555 F 172 0.00 1426 reject_low 12 ALIGNMENT 920 Y12-12p10.q1k chr02 33 1113 269702 270792 F 1081 95.28 1385 accept 0 ALIGNMENT 932 Y12-12p10.p1k chr02 1235 17 273974 275219 C 1219 93.52 1362 accept 0 ALIGNMENT 995 Y12-12p11.p1k chr12 17 1228 368458 369687 F 1212 95.38 1370 accept 0 ALIGNMENT 807 Y12-12p11.q1k chr12 1095 32 372800 373848 C 1064 94.45 1249 accept 0 ALIGNMENT 988 Y12-12p12.q1k chr08 30 1125 506344 507424 F 1096 98.08 1218 accept 0 ALIGNMENT 940 Y12-12p12.p1k chr08 1131 20 511836 512957 C 1112 96.13 1372 accept 0 ALIGNMENT 970 Y12-12p14.p1k chr03 23 1235 37112 38337 F 1213 94.89 1372 accept 0 ALIGNMENT 951 Y12-12p14.q1k chr03 1229 34 40086 41273 C 1196 94.23 1346 accept 0 ALIGNMENT 172 Y12-12p16.p1k chr05 418 21 545617 546014 C 398 81.91 1480 reject_low 1 ALIGNMENT 954 Y12-12p16.q1k chr04 31 1226 643374 644561 F 1196 94.65 1239 accept_trans 0 ALIGNMENT 0 Y12-12p16.p1k chr05 822 419 545618 545617 C 404 0.00 1480 reject_low 1 ALIGNMENT 963 Y12-12p16.p1k chr04 1219 21 652815 654010 C 1199 95.08 1480 accept_trans 0 ALIGNMENT 1083 Y12-12p17.q1k chr08 1305 37 316756 318028 C 1269 96.14 1392 accept 0 ALIGNMENT 1032 Y12-12p17.p1k chr08 21 1165 312779 313936 F 1145 97.90 1359 accept 0 ALIGNMENT 20 Y12-12p18.q1k chr08 557 585 49406 49434 F 29 93.10 1307 reject_low 2 ALIGNMENT 0 Y12-12p18.q1k chr15 704 62 227330 227329 C 643 0.00 1307 reject_low 4 ALIGNMENT 0 Y12-12p18.q1k chr13 704 62 209901 209900 C 643 0.00 1307 reject_low 3 ALIGNMENT 22 Y12-12p18.q1k chr04 733 707 604237 604263 C 27 100.00 1307 reject_low 5 ALIGNMENT 635 Y12-12p18.q1k chr08 29 842 48818 49592 F 814 94.59 1307 accept 0 ALIGNMENT 0 Y12-12p18.q1k chr04 891 734 604238 604237 C 158 0.00 1307 reject_low 5 ALIGNMENT 0 Y12-12p18.q1k chr04 706 62 604264 604263 C 645 0.00 1307 reject_low 5 ALIGNMENT 0 Y12-12p18.q1k chr15 729 891 579541 579540 F 163 0.00 1307 reject_low 6 ALIGNMENT 0 Y12-12p18.q1k chr13 891 734 354194 354193 C 158 0.00 1307 reject_low 7 ALIGNMENT 0 Y12-12p18.q1k chr15 891 734 227302 227301 C 158 0.00 1307 reject_low 4 ALIGNMENT 0 Y12-12p18.q1k chr13 891 734 209873 209872 C 158 0.00 1307 reject_low 3 ALIGNMENT 20 Y12-12p18.q1k chr15 704 728 579517 579541 F 25 100.00 1307 reject_low 6 ALIGNMENT 0 Y12-12p18.q1k chr13 704 62 354222 354221 C 643 0.00 1307 reject_low 7 ALIGNMENT 0 Y12-12p18.q1k chr08 62 392 49182 49181 F 331 0.00 1307 reject_low 1 ALIGNMENT 23 Y12-12p18.q1k chr15 733 705 227301 227329 C 29 100.00 1307 reject_low 4 ALIGNMENT 0 Y12-12p18.q1k chr08 62 556 49406 49405 F 495 0.00 1307 reject_low 2 ALIGNMENT 0 Y12-12p18.q1k chr08 843 891 49592 49591 F 49 0.00 1307 accept 0 ALIGNMENT 20 Y12-12p18.q1k chr13 733 705 354193 354221 C 29 96.55 1307 reject_low 7 ALIGNMENT 0 Y12-12p18.q1k chr15 62 703 579517 579516 F 642 0.00 1307 reject_low 6 ALIGNMENT 950 Y12-12p18.p1k chr08 1176 17 52212 53358 C 1160 95.34 1398 accept 0 ALIGNMENT 0 Y12-12p18.q1k chr08 586 891 49434 49433 F 306 0.00 1307 reject_low 2 ALIGNMENT 23 Y12-12p18.q1k chr13 733 705 209872 209900 C 29 100.00 1307 reject_low 3 ALIGNMENT 465 Y12-12p18.q1k chr08 393 1132 49182 49890 F 740 91.08 1307 reject_low 1 ALIGNMENT 933 Y12-12p19.q1k chr01 1124 33 72956 74059 C 1092 96.34 1313 accept 0 ALIGNMENT 896 Y12-12p19.p1k chr01 20 1041 69549 70574 F 1022 97.16 1368 accept 0 ALIGNMENT 0 Y12-12p19.p1k chr01 62 1041 70544 70543 F 980 0.00 1368 reject_low 1 ALIGNMENT 94 Y12-12p19.p1k chr01 1042 1250 70544 70766 F 209 85.17 1368 reject_low 1 ALIGNMENT 1044 Y12-12p20.p1k chr02 23 1225 773088 774286 F 1203 96.92 1370 accept 0 ALIGNMENT 1000 Y12-12p20.q1k chr02 1259 33 776209 777422 C 1227 95.35 1354 accept 0 ALIGNMENT 1002 Y12-12p22.p1k chr05 19 1153 377856 379007 F 1135 97.09 1353 accept 0 ALIGNMENT 986 Y12-12p22.q1k chr05 1123 28 381297 382395 C 1096 97.45 1252 accept 0 ALIGNMENT 1045 Y12-12p23.q1k chr14 33 1241 464486 465691 F 1209 96.53 1241 accept 0 ALIGNMENT 1035 Y12-12p23.p1k chr14 1250 18 468605 469845 C 1233 96.19 1283 accept 0 ALIGNMENT 769 Y12-12p24.q1k chr04 32 844 1271158 1271969 F 813 98.65 1269 accept 0 ALIGNMENT 1049 Y12-12p24.p1k chr04 1281 20 1274227 1275485 C 1262 96.04 1283 accept 0 ALIGNMENT 963 Y12-13a01.p1k chr16 1126 20 431213 432329 C 1107 96.30 1349 accept 0 ALIGNMENT 969 Y12-13a01.q1k chr16 36 1145 426831 427933 F 1110 97.57 1145 accept 0 ALIGNMENT 928 Y12-13a03.q1k chr02 36 1256 237583 238811 F 1221 93.94 1262 accept 0 ALIGNMENT 949 Y12-13a03.p1k chr02 1102 19 242070 243170 C 1084 96.86 1342 accept 0 ALIGNMENT 0 Y12-13a04.p1k chr14 94 62 426581 426580 C 33 0.00 1373 reject_low 1 ALIGNMENT 969 Y12-13a04.q1k chr15 1216 27 526237 527441 C 1190 95.46 1243 accept 0 ALIGNMENT 54 Y12-13a04.q1k chr14 308 785 422541 423018 F 478 71.76 1243 reject_low 1 ALIGNMENT 0 Y12-13a04.q1k chr14 786 846 423018 423017 F 61 0.00 1243 reject_low 1 ALIGNMENT 0 Y12-13a04.q1k chr14 62 307 422541 422540 F 246 0.00 1243 reject_low 1 ALIGNMENT 1007 Y12-13a04.p1k chr15 26 1190 523129 524312 F 1165 95.71 1373 accept 0 ALIGNMENT 587 Y12-13a04.p1k chr14 1062 95 425609 426580 C 968 86.98 1373 reject_low 1 ALIGNMENT 22 Y12-13a05.q1k chr08 196 33 562456 562618 C 164 89.02 1249 reject_low 19 ALIGNMENT 273 Y12-13a05.q1k chr04 1021 349 1524645 1525284 C 673 85.29 1249 reject_low 13 ALIGNMENT 0 Y12-13a05.q1k chr11 62 230 2 1 F 169 0.00 1249 reject_low 17 ALIGNMENT 248 Y12-13a05.q1k chr12 132 1021 11199 12048 F 890 82.81 1249 reject_low 15 ALIGNMENT 0 Y12-13a05.q1k chr03 62 216 5 4 F 155 0.00 1249 reject_low 26 ALIGNMENT 0 Y12-13a05.p1k chr12 333 444 1002363 1002497 F 112 0.00 1377 reject_low 2 ALIGNMENT 0 Y12-13a05.q1k chr01 799 342 230122 230121 C 458 0.00 1249 reject_low 1 ALIGNMENT 322 Y12-13a05.q1k chr08 1065 160 556097 556985 C 906 84.22 1249 accept_tel 0 ALIGNMENT 0 Y12-13a05.q1k chr01 433 460 210 214 F 28 0.00 1249 reject_low 27 ALIGNMENT 278 Y12-13a05.q1k chr03 1034 172 315804 316616 C 863 83.89 1249 reject_low 11 ALIGNMENT 22 Y12-13a05.q1k chr12 46 214 11196 11358 F 169 88.76 1249 reject_low 20 ALIGNMENT 0 Y12-13a05.q1k chr09 348 62 439754 439753 C 287 0.00 1249 reject_low 8 ALIGNMENT 301 Y12-13a05.q1k chr11 1021 128 665579 666454 C 894 84.12 1249 reject_low 7 ALIGNMENT 251 Y12-13a05.q1k chr11 231 975 2 723 F 745 83.49 1249 reject_low 17 ALIGNMENT 0 Y12-13a05.q1k chr12 215 799 11358 11357 F 585 0.00 1249 reject_low 20 ALIGNMENT 0 Y12-13a05.q1k chr08 799 306 562457 562456 C 494 0.00 1249 reject_low 24 ALIGNMENT 0 Y12-13a05.q1k chr13 799 356 924290 924289 C 444 0.00 1249 reject_low 25 ALIGNMENT 0 Y12-13a05.q1k chr12 62 131 11199 11198 F 70 0.00 1249 reject_low 15 ALIGNMENT 253 Y12-13a05.q1k chr10 512 1034 7233 7742 F 523 86.42 1249 reject_low 14 ALIGNMENT 317 Y12-13a05.q1k chr09 1021 349 439102 439753 C 673 86.63 1249 reject_low 8 ALIGNMENT 837 Y12-13a05.p1k chr08 19 1061 553905 554967 F 1043 94.44 1377 accept_tel 0 ALIGNMENT 27 Y12-13a05.q1k chr14 339 84 784055 784307 C 256 89.45 1249 reject_low 21 ALIGNMENT 0 Y12-13a05.q1k chr14 799 340 784056 784055 C 460 0.00 1249 reject_low 21 ALIGNMENT 0 Y12-13a05.q1k chr03 171 62 316617 316616 C 110 0.00 1249 reject_low 11 ALIGNMENT 0 Y12-13a05.q1k chr13 62 348 5653 5652 F 287 0.00 1249 reject_low 3 ALIGNMENT 716 Y12-13a05.p1k chr01 19 1061 227257 228304 F 1043 91.18 1377 reject_low 1 ALIGNMENT 250 Y12-13a05.q1k chr14 1021 33 783315 784287 C 989 82.31 1249 reject_low 5 ALIGNMENT 0 Y12-13a05.q1k chr08 159 62 556986 556985 C 98 0.00 1249 accept_tel 0 ALIGNMENT 0 Y12-13a05.q1k chr14 96 62 784331 784330 C 35 0.00 1249 reject_low 23 ALIGNMENT 22 Y12-13a05.q1k chr08 256 79 562456 562630 C 178 90.45 1249 reject_low 22 ALIGNMENT 0 Y12-13a05.q1k chr14 62 348 6754 6753 F 287 0.00 1249 reject_low 16 ALIGNMENT 291 Y12-13a05.q1k chr13 1021 151 923575 924424 C 871 83.81 1249 reject_low 10 ALIGNMENT 37 Y12-13a05.q1k chr01 349 432 130 209 F 84 89.29 1249 reject_low 27 ALIGNMENT 0 Y12-13a05.q1k chr08 799 197 562457 562456 C 603 0.00 1249 reject_low 19 ALIGNMENT 226 Y12-13a05.q1k chr06 186 1021 4689 5493 F 836 81.70 1249 reject_low 18 ALIGNMENT 248 Y12-13a05.q1k chr14 349 1034 6754 7403 F 686 83.82 1249 reject_low 16 ALIGNMENT 21 Y12-13a05.q1k chr08 305 118 562456 562640 C 188 89.89 1249 reject_low 24 ALIGNMENT 24 Y12-13a05.q1k chr14 337 97 784094 784330 C 241 89.63 1249 reject_low 23 ALIGNMENT 0 Y12-13a05.q1k chr08 78 62 562631 562630 C 17 0.00 1249 reject_low 22 ALIGNMENT 246 Y12-13a05.q1k chr03 33 1021 88 1061 F 989 82.20 1249 reject_low 6 ALIGNMENT 0 Y12-13a05.q1k chr14 83 62 784308 784307 C 22 0.00 1249 reject_low 21 ALIGNMENT 0 Y12-13a05.q1k chr08 117 62 562641 562640 C 56 0.00 1249 reject_low 24 ALIGNMENT 302 Y12-13a05.p1k chr12 445 1061 1002498 1003124 F 617 83.79 1377 reject_low 2 ALIGNMENT 0 Y12-13a05.q1k chr10 62 511 7233 7232 F 450 0.00 1249 reject_low 14 ALIGNMENT 23 Y12-13a05.q1k chr01 341 261 230121 230204 C 81 93.83 1249 reject_low 1 ALIGNMENT 0 Y12-13a05.q1k chr12 153 62 1065154 1065153 C 92 0.00 1249 reject_low 9 ALIGNMENT 282 Y12-13a05.q1k chr01 461 1021 215 764 F 561 86.63 1249 reject_low 27 ALIGNMENT 0 Y12-13a05.q1k chr07 62 348 99 98 F 287 0.00 1249 reject_low 12 ALIGNMENT 0 Y12-13a05.q1k chr13 150 62 924425 924424 C 89 0.00 1249 reject_low 10 ALIGNMENT 0 Y12-13a05.q1k chr01 62 348 130 129 F 287 0.00 1249 reject_low 27 ALIGNMENT 0 Y12-13a05.q1k chr02 348 62 813065 813064 C 287 0.00 1249 reject_low 4 ALIGNMENT 20 Y12-13a05.q1k chr03 217 339 5 130 F 123 91.06 1249 reject_low 26 ALIGNMENT 0 Y12-13a05.q1k chr13 210 62 924427 924426 C 149 0.00 1249 reject_low 25 ALIGNMENT 0 Y12-13a05.q1k chr04 348 62 1525285 1525284 C 287 0.00 1249 reject_low 13 ALIGNMENT 0 Y12-13a05.q1k chr14 799 338 784095 784094 C 462 0.00 1249 reject_low 23 ALIGNMENT 0 Y12-13a05.q1k chr03 340 799 130 129 F 460 0.00 1249 reject_low 26 ALIGNMENT 0 Y12-13a05.q1k chr11 127 62 666455 666454 C 66 0.00 1249 reject_low 7 ALIGNMENT 21 Y12-13a05.q1k chr13 355 211 924289 924426 C 145 89.66 1249 reject_low 25 ALIGNMENT 0 Y12-13a05.q1k chr08 799 257 562457 562456 C 543 0.00 1249 reject_low 22 ALIGNMENT 335 Y12-13a05.q1k chr13 349 1021 5653 6307 F 673 87.22 1249 reject_low 3 ALIGNMENT 0 Y12-13a05.q1k chr06 62 185 4689 4688 F 124 0.00 1249 reject_low 18 ALIGNMENT 284 Y12-13a05.q1k chr07 349 1021 99 744 F 673 85.29 1249 reject_low 12 ALIGNMENT 334 Y12-13a05.q1k chr02 1021 349 812410 813064 C 673 87.22 1249 reject_low 4 ALIGNMENT 28 Y12-13a05.p1k chr12 291 332 1002320 1002362 F 42 90.48 1377 reject_low 2 ALIGNMENT 0 Y12-13a05.q1k chr01 260 62 230205 230204 C 199 0.00 1249 reject_low 1 ALIGNMENT 290 Y12-13a05.q1k chr12 1034 154 1064303 1065153 C 881 83.77 1249 reject_low 9 ALIGNMENT 0 Y12-13a05.p1k chr12 62 290 1002320 1002319 F 229 0.00 1377 reject_low 2 ALIGNMENT 898 Y12-13a06.q1k chr16 1036 27 118120 119139 C 1010 97.92 1168 accept 0 ALIGNMENT 1001 Y12-13a06.p1k chr16 22 1205 114246 115449 F 1184 95.61 1421 accept 0 ALIGNMENT 910 Y12-13a07.p1k chr09 28 1091 167303 168380 F 1064 96.90 1353 accept 0 ALIGNMENT 969 Y12-13a07.q1k chr09 1226 36 170891 172084 C 1191 95.38 1227 accept 0 ALIGNMENT 989 Y12-13a08.p1k chr09 17 1185 262391 263569 F 1169 95.72 1416 accept 0 ALIGNMENT 685 Y12-13a08.q1k chr09 777 31 267476 268222 C 747 97.46 1269 accept 0 ALIGNMENT 0 Y12-13a09.q1k chr11 62 236 2 1 F 175 0.00 1267 ambiguous_tel 17 ALIGNMENT 363 Y12-13a09.q1k chr13 240 1009 5537 6315 F 770 86.75 1267 ambiguous_tel 12 ALIGNMENT 0 Y12-13a09.q1k chr13 876 116 924303 924302 C 761 0.00 1267 ambiguous_tel 21 ALIGNMENT 0 Y12-13a09.q1k chr03 268 876 261 260 F 609 0.00 1267 ambiguous_tel 20 ALIGNMENT 29 Y12-13a09.q1k chr03 40 267 29 261 F 228 89.04 1267 ambiguous_tel 20 ALIGNMENT 0 Y12-13a09.q1k chr12 62 138 11199 11198 F 77 0.00 1267 ambiguous_tel 10 ALIGNMENT 0 Y12-13a09.q1k chr14 876 265 784185 784184 C 612 0.00 1267 ambiguous_tel 25 ALIGNMENT 0 Y12-13a09.q1k chr08 157 151 556986 562455 C 7 0.00 1267 ambiguous_tel 27 ALIGNMENT 21 Y12-13a09.q1k chr03 37 158 232 362 F 122 90.16 1267 ambiguous_tel 19 ALIGNMENT 324 Y12-13a09.q1k chr08 1002 158 556141 556985 C 845 85.21 1267 ambiguous_tel 27 ALIGNMENT 434 Y12-13a09.q1k chr10 1011 190 744844 745666 C 822 88.69 1267 ambiguous_tel 5 ALIGNMENT 411 Y12-13a09.q1k chr13 1003 162 923573 924428 C 842 87.53 1267 ambiguous_tel 6 ALIGNMENT 40 Y12-13a09.q1k chr06 164 384 4689 4912 F 221 84.62 1267 ambiguous_tel 28 ALIGNMENT 0 Y12-13a09.q1k chr03 265 876 207 206 F 612 0.00 1267 ambiguous_tel 23 ALIGNMENT 367 Y12-13a09.q1k chr02 1009 240 812402 813178 C 770 86.88 1267 ambiguous_tel 11 ALIGNMENT 22 Y12-13a09.q1k chr14 264 68 784126 784330 C 197 89.85 1267 ambiguous_tel 22 ALIGNMENT 322 Y12-13a09.q1k chr11 1009 442 665571 666136 C 568 89.26 1267 ambiguous_tel 26 ALIGNMENT 0 Y12-13a09.q1k chr05 309 62 570324 570323 C 248 0.00 1267 ambiguous_tel 3 ALIGNMENT 0 Y12-13a09.q1k chr03 198 62 316615 316614 C 137 0.00 1267 ambiguous_tel 1 ALIGNMENT 370 Y12-13a09.q1k chr12 1011 180 1064305 1065147 C 832 86.30 1267 ambiguous_tel 9 ALIGNMENT 0 Y12-13a09.q1k chr03 159 876 362 361 F 718 0.00 1267 ambiguous_tel 19 ALIGNMENT 0 Y12-13a09.q1k chr06 385 447 4913 4935 F 63 0.00 1267 ambiguous_tel 28 ALIGNMENT 324 Y12-13a09.q1k chr11 237 995 2 765 F 759 85.64 1267 ambiguous_tel 17 ALIGNMENT 311 Y12-13a09.q1k chr10 500 1011 7225 7740 F 512 90.62 1267 ambiguous_tel 18 ALIGNMENT 440 Y12-13a09.q1k chr03 1084 199 315733 316614 C 886 87.58 1267 ambiguous_tel 1 ALIGNMENT 344 Y12-13a09.q1k chr15 1011 327 1083945 1084616 C 685 87.59 1267 ambiguous_tel 14 ALIGNMENT 0 Y12-13a09.q1k chr13 62 239 5537 5536 F 178 0.00 1267 ambiguous_tel 12 ALIGNMENT 0 Y12-13a09.q1k chr11 441 421 666137 666124 C 21 0.00 1267 ambiguous_tel 26 ALIGNMENT 20 Y12-13a09.q1k chr13 115 40 924302 924376 C 76 92.11 1267 ambiguous_tel 21 ALIGNMENT 0 Y12-13a09.q1k chr04 180 62 1525451 1525450 C 119 0.00 1267 ambiguous_tel 8 ALIGNMENT 20 Y12-13a09.q1k chr08 150 39 562456 562566 C 112 90.18 1267 ambiguous_tel 27 ALIGNMENT 458 Y12-13a09.q1k chr05 1009 310 569623 570323 C 700 91.57 1267 ambiguous_tel 3 ALIGNMENT 0 Y12-13a09.q1k chr13 161 62 924429 924428 C 100 0.00 1267 ambiguous_tel 6 ALIGNMENT 300 Y12-13a09.q1k chr06 448 1009 4936 5501 F 562 87.54 1267 ambiguous_tel 28 ALIGNMENT 339 Y12-13a09.q1k chr14 222 1011 6619 7401 F 790 86.08 1267 ambiguous_tel 15 ALIGNMENT 373 Y12-13a09.q1k chr04 1009 181 1524637 1525450 C 829 86.85 1267 ambiguous_tel 8 ALIGNMENT 0 Y12-13a09.q1k chr14 118 62 784331 784330 C 57 0.00 1267 ambiguous_tel 25 ALIGNMENT 0 Y12-13a09.q1k chr07 62 253 2 1 F 192 0.00 1267 ambiguous_tel 13 ALIGNMENT 0 Y12-13a09.q1k chr14 876 265 784127 784126 C 612 0.00 1267 ambiguous_tel 22 ALIGNMENT 436 Y12-13a09.q1k chr14 1002 38 783314 784285 C 965 87.46 1267 ambiguous_tel 2 ALIGNMENT 0 Y12-13a09.q1k chr10 189 62 745667 745666 C 128 0.00 1267 ambiguous_tel 5 ALIGNMENT 21 Y12-13a09.q1k chr03 65 264 2 207 F 200 89.00 1267 ambiguous_tel 23 ALIGNMENT 0 Y12-13a09.q1k chr02 239 62 813179 813178 C 178 0.00 1267 ambiguous_tel 11 ALIGNMENT 406 Y12-13a09.q1k chr09 1005 229 439098 439885 C 777 88.03 1267 ambiguous_tel 7 ALIGNMENT 326 Y12-13a09.q1k chr01 234 1008 2 771 F 775 85.68 1267 ambiguous_tel 16 ALIGNMENT 0 Y12-13a09.q1k chr12 179 62 1065148 1065147 C 118 0.00 1267 ambiguous_tel 9 ALIGNMENT 0 Y12-13a09.q1k chr15 326 62 1084617 1084616 C 265 0.00 1267 ambiguous_tel 14 ALIGNMENT 0 Y12-13a09.q1k chr09 228 62 439886 439885 C 167 0.00 1267 ambiguous_tel 7 ALIGNMENT 20 Y12-13a09.q1k chr08 249 66 562456 562638 C 184 89.13 1267 ambiguous_tel 24 ALIGNMENT 0 Y12-13a09.q1k chr11 95 62 666454 666453 C 34 0.00 1267 ambiguous_tel 26 ALIGNMENT 0 Y12-13a09.q1k chr08 876 250 562457 562456 C 627 0.00 1267 ambiguous_tel 24 ALIGNMENT 54 Y12-13a09.q1k chr11 420 96 666125 666453 C 325 85.23 1267 ambiguous_tel 26 ALIGNMENT 0 Y12-13a09.q1k chr10 62 499 7225 7224 F 438 0.00 1267 ambiguous_tel 18 ALIGNMENT 0 Y12-13a09.q1k chr14 62 221 6619 6618 F 160 0.00 1267 ambiguous_tel 15 ALIGNMENT 0 Y12-13a09.q1k chr06 62 163 4689 4688 F 102 0.00 1267 ambiguous_tel 28 ALIGNMENT 356 Y12-13a09.q1k chr12 139 1002 11199 12049 F 864 86.34 1267 ambiguous_tel 10 ALIGNMENT 858 Y12-13a09.p1k chr07 1150 30 595182 596316 C 1121 94.20 1379 accept 0 ALIGNMENT 348 Y12-13a09.q1k chr07 254 1005 2 748 F 752 86.30 1267 ambiguous_tel 13 ALIGNMENT 0 Y12-13a09.q1k chr01 62 233 2 1 F 172 0.00 1267 ambiguous_tel 16 ALIGNMENT 23 Y12-13a09.q1k chr14 264 119 784184 784330 C 146 91.78 1267 ambiguous_tel 25 ALIGNMENT 370 Y12-13a09.q1k chr03 38 1008 90 1068 F 971 85.58 1267 ambiguous_tel 4 ALIGNMENT 1003 Y12-13a10.q1k chr16 33 1160 611072 612205 F 1128 97.07 1211 accept 0 ALIGNMENT 999 Y12-13a10.p1k chr16 1238 24 615771 617001 C 1215 94.90 1395 accept 0 ALIGNMENT 109 Y12-13a11.p1k chr05 22 190 576698 576866 F 169 91.12 1390 ambiguous_tel 25 ALIGNMENT 621 Y12-13a11.p1k chr04 256 1229 1525355 1526344 F 974 89.94 1390 ambiguous_tel 6 ALIGNMENT 0 Y12-13a11.p1k chr09 399 62 6949 6948 C 338 0.00 1390 ambiguous_tel 4 ALIGNMENT 109 Y12-13a11.p1k chr07 22 190 1090775 1090943 F 169 91.12 1390 ambiguous_tel 26 ALIGNMENT 0 Y12-13a11.p1k chr02 827 123 3 2 C 705 0.00 1390 ambiguous_tel 28 ALIGNMENT 0 Y12-13a11.p1k chr16 62 636 942804 942803 F 575 0.00 1390 ambiguous_tel 17 ALIGNMENT 0 Y12-13a11.p1k chr16 827 123 3 2 C 705 0.00 1390 ambiguous_tel 27 ALIGNMENT 0 Y12-13a11.p1k chr14 62 255 784209 784208 F 194 0.00 1390 ambiguous_tel 30 ALIGNMENT 596 Y12-13a11.p1k chr12 343 1252 1071644 1072571 F 910 90.22 1390 ambiguous_tel 16 ALIGNMENT 885 Y12-13a11.q1k chr07 1095 38 496043 497109 C 1058 97.26 1225 accept 0 ALIGNMENT 0 Y12-13a11.p1k chr13 306 62 5585 5584 C 245 0.00 1390 ambiguous_tel 7 ALIGNMENT 22 Y12-13a11.p1k chr14 256 351 784209 784306 F 96 93.75 1390 ambiguous_tel 30 ALIGNMENT 548 Y12-13a11.p1k chr12 249 1252 1065050 1066019 F 1004 88.15 1390 ambiguous_tel 14 ALIGNMENT 652 Y12-13a11.p1k chr12 1256 22 4737 5942 C 1235 87.45 1390 ambiguous_tel 1 ALIGNMENT 638 Y12-13a11.p1k chr07 352 1252 1084352 1085276 F 901 91.34 1390 ambiguous_tel 8 ALIGNMENT 0 Y12-13a11.p1k chr14 352 827 784306 784305 F 476 0.00 1390 ambiguous_tel 30 ALIGNMENT 0 Y12-13a11.p1k chr13 827 304 3 2 C 524 0.00 1390 ambiguous_tel 21 ALIGNMENT 333 Y12-13a11.p1k chr05 1256 525 5642 6338 C 732 85.52 1390 ambiguous_tel 19 ALIGNMENT 0 Y12-13a11.p1k chr06 250 62 4782 4781 C 189 0.00 1390 ambiguous_tel 11 ALIGNMENT 623 Y12-13a11.p1k chr05 352 1252 570325 571216 F 901 91.79 1390 ambiguous_tel 10 ALIGNMENT 138 Y12-13a11.p1k chr12 22 258 1071410 1071651 F 237 89.03 1390 ambiguous_tel 16 ALIGNMENT 515 Y12-13a11.p1k chr02 1256 347 4938 5850 C 910 87.80 1390 ambiguous_tel 15 ALIGNMENT 432 Y12-13a11.p1k chr16 637 1252 942804 943434 F 616 91.07 1390 ambiguous_tel 17 ALIGNMENT 57 Y12-13a11.p1k chr02 122 27 2 96 C 96 89.58 1390 ambiguous_tel 28 ALIGNMENT 622 Y12-13a11.p1k chr13 1256 307 4613 5584 C 950 90.21 1390 ambiguous_tel 7 ALIGNMENT 0 Y12-13a11.p1k chr08 62 248 556891 556890 F 187 0.00 1390 ambiguous_tel 12 ALIGNMENT 593 Y12-13a11.p1k chr06 1256 251 3775 4781 C 1006 88.87 1390 ambiguous_tel 11 ALIGNMENT 155 Y12-13a11.p1k chr12 328 22 2 305 C 307 88.60 1390 ambiguous_tel 22 ALIGNMENT 592 Y12-13a11.p1k chr15 352 1252 1084616 1085535 F 901 90.23 1390 ambiguous_tel 13 ALIGNMENT 0 Y12-13a11.p1k chr12 827 329 3 2 C 499 0.00 1390 ambiguous_tel 22 ALIGNMENT 0 Y12-13a11.p1k chr10 399 62 6932 6931 C 338 0.00 1390 ambiguous_tel 5 ALIGNMENT 638 Y12-13a11.p1k chr16 1252 352 5601 6525 C 901 91.45 1390 ambiguous_tel 9 ALIGNMENT 154 Y12-13a11.p1k chr13 303 22 2 283 C 282 89.01 1390 ambiguous_tel 21 ALIGNMENT 580 Y12-13a11.p1k chr08 249 1252 556891 557888 F 1004 88.35 1390 ambiguous_tel 12 ALIGNMENT 661 Y12-13a11.p1k chr12 1256 251 10272 11297 C 1006 90.46 1390 ambiguous_tel 3 ALIGNMENT 46 Y12-13a11.p1k chr05 106 22 2 86 C 85 88.24 1390 ambiguous_tel 29 ALIGNMENT 0 Y12-13a11.p1k chr16 206 827 948062 948061 F 622 0.00 1390 ambiguous_tel 24 ALIGNMENT 0 Y12-13a11.p1k chr05 62 351 570325 570324 F 290 0.00 1390 ambiguous_tel 10 ALIGNMENT 0 Y12-13a11.p1k chr04 62 255 1525355 1525354 F 194 0.00 1390 ambiguous_tel 6 ALIGNMENT 0 Y12-13a11.p1k chr08 352 827 562556 562555 F 476 0.00 1390 ambiguous_tel 20 ALIGNMENT 0 Y12-13a11.p1k chr12 259 342 1071652 1071643 F 84 0.00 1390 ambiguous_tel 16 ALIGNMENT 0 Y12-13a11.p1k chr05 524 62 6339 6338 C 463 0.00 1390 ambiguous_tel 19 ALIGNMENT 114 Y12-13a11.p1k chr16 22 205 947875 948062 F 184 90.22 1390 ambiguous_tel 24 ALIGNMENT 0 Y12-13a11.p1k chr02 346 62 5851 5850 C 285 0.00 1390 ambiguous_tel 15 ALIGNMENT 212 Y12-13a11.p1k chr10 305 19 5 295 C 287 94.77 1390 ambiguous_tel 18 ALIGNMENT 0 Y12-13a11.p1k chr15 62 351 1084616 1084615 F 290 0.00 1390 ambiguous_tel 13 ALIGNMENT 0 Y12-13a11.p1k chr16 351 62 6526 6525 C 290 0.00 1390 ambiguous_tel 9 ALIGNMENT 142 Y12-13a11.p1k chr15 22 268 1091037 1091287 F 247 89.07 1390 ambiguous_tel 23 ALIGNMENT 0 Y12-13a11.p1k chr10 827 306 6 5 C 522 0.00 1390 ambiguous_tel 18 ALIGNMENT 0 Y12-13a11.p1k chr12 62 248 1065050 1065049 F 187 0.00 1390 ambiguous_tel 14 ALIGNMENT 682 Y12-13a11.p1k chr10 1252 400 6064 6931 C 853 94.37 1390 ambiguous_tel 5 ALIGNMENT 680 Y12-13a11.p1k chr14 1252 283 5692 6686 C 970 91.34 1390 ambiguous_tel 2 ALIGNMENT 682 Y12-13a11.p1k chr09 1252 400 6081 6948 C 853 94.37 1390 ambiguous_tel 4 ALIGNMENT 0 Y12-13a11.p1k chr15 269 827 1091287 1091286 F 559 0.00 1390 ambiguous_tel 23 ALIGNMENT 0 Y12-13a11.p1k chr07 191 827 1090943 1090942 F 637 0.00 1390 ambiguous_tel 26 ALIGNMENT 0 Y12-13a11.p1k chr12 250 62 11298 11297 C 189 0.00 1390 ambiguous_tel 3 ALIGNMENT 184 Y12-13a11.p1k chr08 22 351 562225 562556 F 330 90.00 1390 ambiguous_tel 20 ALIGNMENT 58 Y12-13a11.p1k chr16 122 22 2 102 C 101 89.11 1390 ambiguous_tel 27 ALIGNMENT 0 Y12-13a11.p1k chr05 827 107 3 2 C 721 0.00 1390 ambiguous_tel 29 ALIGNMENT 0 Y12-13a11.p1k chr07 62 351 1084352 1084351 F 290 0.00 1390 ambiguous_tel 8 ALIGNMENT 0 Y12-13a11.p1k chr14 282 62 6687 6686 C 221 0.00 1390 ambiguous_tel 2 ALIGNMENT 0 Y12-13a11.p1k chr05 191 827 576866 576865 F 637 0.00 1390 ambiguous_tel 25 ALIGNMENT 659 Y12-13a12.q1k chr15 838 40 1058354 1059149 C 799 95.24 1325 accept 0 ALIGNMENT 708 Y12-13a12.p1k chr15 20 894 1053633 1054515 F 875 95.20 1429 accept 0 ALIGNMENT 0 Y12-13a13.q1k chr12 622 62 64284 64283 C 561 0.00 1242 reject_low 4 ALIGNMENT 76 Y12-13a13.q1k chr11 721 627 617915 618009 C 95 93.68 1242 reject_low 1 ALIGNMENT 0 Y12-13a13.q1k chr12 622 62 64968 64967 C 561 0.00 1242 reject_low 6 ALIGNMENT 54 Y12-13a13.q1k chr12 723 624 65095 65194 C 100 85.00 1242 reject_low 3 ALIGNMENT 949 Y12-13a13.p1k chr09 1054 25 72014 73053 C 1030 97.96 1351 accept 0 ALIGNMENT 43 Y12-13a13.q1k chr12 723 623 64867 64967 C 101 81.19 1242 reject_low 6 ALIGNMENT 61 Y12-13a13.q1k chr12 624 718 498961 499055 F 95 88.42 1242 reject_low 2 ALIGNMENT 49 Y12-13a13.q1k chr12 723 623 64183 64283 C 101 83.17 1242 reject_low 4 ALIGNMENT 0 Y12-13a13.q1k chr12 622 62 64740 64739 C 561 0.00 1242 reject_low 5 ALIGNMENT 0 Y12-13a13.q1k chr11 626 62 618010 618009 C 565 0.00 1242 reject_low 1 ALIGNMENT 0 Y12-13a13.q1k chr12 623 62 65195 65194 C 562 0.00 1242 reject_low 3 ALIGNMENT 46 Y12-13a13.q1k chr12 723 623 64639 64739 C 101 82.18 1242 reject_low 5 ALIGNMENT 637 Y12-13a13.q1k chr09 34 721 68564 69251 F 688 98.69 1242 accept 0 ALIGNMENT 0 Y12-13a13.q1k chr12 62 623 498961 498960 F 562 0.00 1242 reject_low 2 ALIGNMENT 772 Y12-13a15.p1k chr02 837 17 202601 203422 C 821 98.42 1421 accept 0 ALIGNMENT 890 Y12-13a15.q1k chr02 35 1015 199358 200332 F 981 97.96 1283 accept 0 ALIGNMENT 969 Y12-13a16.p1k chr15 19 1151 565743 566889 F 1133 96.56 1346 accept 0 ALIGNMENT 1030 Y12-13a16.q1k chr15 1243 36 569118 570326 C 1208 96.19 1255 accept 0 ALIGNMENT 980 Y12-13a17.q1k chr10 36 1181 722805 723950 F 1146 95.81 1237 accept 0 ALIGNMENT 56 Y12-13a17.p1k chr01 708 584 224551 224675 C 125 81.60 1384 reject_low 1 ALIGNMENT 0 Y12-13a17.p1k chr01 922 709 224552 224551 C 214 0.00 1384 reject_low 1 ALIGNMENT 1040 Y12-13a17.p1k chr10 1215 23 725825 727021 C 1193 96.56 1384 accept 0 ALIGNMENT 0 Y12-13a17.p1k chr01 583 62 224676 224675 C 522 0.00 1384 reject_low 1 ALIGNMENT 898 Y12-13a18.q1k chr15 30 1112 83569 84677 F 1083 95.29 1214 accept 0 ALIGNMENT 1008 Y12-13a18.p1k chr15 1224 20 87148 88373 C 1205 96.35 1354 accept 0 ALIGNMENT 971 Y12-13a19.p1k chr15 19 1109 485314 486423 F 1091 97.62 1308 accept 0 ALIGNMENT 989 Y12-13a19.q1k chr15 1204 64 488243 489399 C 1141 96.41 1216 accept 0 ALIGNMENT 616 Y12-13a20.q1k chr15 144 1003 83609 84451 F 860 92.56 1435 accept 0 ALIGNMENT 1005 Y12-13a21.q1k chr12 1152 37 546395 547512 C 1116 97.85 1154 accept 0 ALIGNMENT 943 Y12-13a21.p1k chr12 20 1071 541417 542478 F 1052 97.43 1325 accept 0 ALIGNMENT 621 Y12-13a22.p1k chr08 778 32 451326 452073 C 747 94.51 1314 reject_low 1 ALIGNMENT 960 Y12-13a22.p1k chr07 1130 32 1000560 1001678 C 1099 96.54 1314 accept 0 ALIGNMENT 944 Y12-13a22.q1k chr07 37 1166 997657 998783 F 1130 95.22 1185 accept 0 ALIGNMENT 0 Y12-13a22.p1k chr08 860 779 451327 451326 C 82 0.00 1314 reject_low 1 ALIGNMENT 1017 Y12-13a23.q1k chr12 1164 36 840317 841438 C 1129 97.25 1164 accept 0 ALIGNMENT 1070 Y12-13a23.p1k chr12 23 1290 837543 838812 F 1268 95.50 1308 accept 0 ALIGNMENT 847 Y12-13b02.q1k chr10 33 982 610628 611563 F 950 98.21 1196 accept 0 ALIGNMENT 1002 Y12-13b02.p1k chr10 1189 27 613982 615151 C 1163 96.13 1370 accept 0 ALIGNMENT 947 Y12-13b03.q1k chr07 1173 36 1034860 1035993 C 1138 95.61 1273 accept 0 ALIGNMENT 880 Y12-13b03.p1k chr07 24 1057 1031213 1032256 F 1034 96.71 1343 accept 0 ALIGNMENT 960 Y12-13b04.q1k chr05 34 1187 150711 151873 F 1154 95.23 1262 accept 0 ALIGNMENT 913 Y12-13b04.p1k chr05 1048 21 154297 155338 C 1028 96.98 1335 accept 0 ALIGNMENT 489 Y12-13b05.p1k chr07 553 15 793895 794436 C 539 98.33 1432 reject_bad_break 0 ALIGNMENT 947 Y12-13b05.q1k chr07 34 1120 788592 789677 F 1087 97.15 1222 reject_bad_break 0 ALIGNMENT 390 Y12-13b05.p1k chr07 1175 692 793411 793897 C 484 93.39 1432 reject_bad_break 0 ALIGNMENT 0 Y12-13b05.p1k chr07 691 554 793898 793894 C 138 0.00 1432 reject_bad_break 0 ALIGNMENT 34 Y12-13b06.p1k chrm 68 111 29841 29884 F 44 95.45 1471 reject_low 6 ALIGNMENT 0 Y12-13b06.p1k chrm 112 925 29884 29883 F 814 0.00 1471 reject_low 6 ALIGNMENT 366 Y12-13b06.p1k chrm 1046 433 80737 81343 C 614 97.23 1471 reject_bad_break 0 ALIGNMENT 38 Y12-13b06.p1k chrm 67 111 81403 81447 F 45 97.78 1471 reject_low 3 ALIGNMENT 0 Y12-13b06.p1k chrm 112 925 11549 11548 F 814 0.00 1471 reject_low 4 ALIGNMENT 29 Y12-13b06.q1k chrm 89 58 77866 77897 C 32 96.88 1231 ambiguous 2 ALIGNMENT 0 Y12-13b06.q1k chrm 750 62 77898 77897 C 689 0.00 1231 ambiguous 1 ALIGNMENT 0 Y12-13b06.q1k chrm 845 785 77865 77864 C 61 0.00 1231 ambiguous 1 ALIGNMENT 0 Y12-13b06.q1k chrm 845 90 77867 77866 C 756 0.00 1231 ambiguous 2 ALIGNMENT 0 Y12-13b06.p1k chrm 107 69 81824 81823 C 39 0.00 1471 reject_bad_break 0 ALIGNMENT 37 Y12-13b06.p1k chrm 68 111 11506 11549 F 44 97.73 1471 reject_low 4 ALIGNMENT 0 Y12-13b06.p1k chrm 112 925 81447 81446 F 814 0.00 1471 reject_low 3 ALIGNMENT 35 Y12-13b06.p1k chrm 68 109 11047 11088 F 42 97.62 1471 reject_low 5 ALIGNMENT 31 Y12-13b06.q1k chrm 784 751 77864 77897 C 34 97.06 1231 ambiguous 1 ALIGNMENT 0 Y12-13b06.p1k chrm 432 367 81344 81553 C 66 0.00 1471 reject_bad_break 0 ALIGNMENT 0 Y12-13b06.p1k chrm 110 925 11088 11087 F 816 0.00 1471 reject_low 5 ALIGNMENT 34 Y12-13b06.p1k chrm 68 23 81824 81869 C 46 97.83 1471 reject_bad_break 0 ALIGNMENT 167 Y12-13b06.p1k chrm 366 108 81554 81823 C 259 94.98 1471 reject_bad_break 0 ALIGNMENT 1003 Y12-13b07.p1k chr10 1172 22 185834 186996 C 1151 96.70 1389 accept 0 ALIGNMENT 1049 Y12-13b07.q1k chr10 36 1216 182893 184071 F 1181 97.38 1216 accept 0 ALIGNMENT 955 Y12-13b08.q1k chr11 33 1201 485942 487105 F 1169 94.78 1231 accept 0 ALIGNMENT 762 Y12-13b08.p1k chr11 1019 19 488859 489880 C 1001 94.01 1411 accept 0 ALIGNMENT 890 Y12-13b09.p1k chr07 1095 19 635077 636163 C 1077 95.82 1323 accept 0 ALIGNMENT 1038 Y12-13b09.q1k chr07 38 1229 631981 633178 F 1192 97.32 1229 accept 0 ALIGNMENT 584 Y12-13b10.q1k chr07 34 752 178070 178785 F 719 94.99 1346 accept 0 ALIGNMENT 714 Y12-13b10.p1k chr07 1079 27 181947 182995 C 1053 90.31 1376 accept 0 ALIGNMENT 1017 Y12-13b11.q1k chr10 36 1188 661088 662247 F 1153 96.79 1263 accept 0 ALIGNMENT 948 Y12-13b11.p1k chr10 1077 20 664722 665788 C 1058 97.45 1336 accept 0 ALIGNMENT 975 Y12-13b12.p1k chr15 16 1192 606664 607848 F 1177 95.75 1407 accept 0 ALIGNMENT 955 Y12-13b12.q1k chr15 1153 34 611512 612632 C 1120 96.25 1259 accept 0 ALIGNMENT 957 Y12-13b13.p1k chr10 1175 27 438679 439842 C 1149 96.17 1389 accept 0 ALIGNMENT 707 Y12-13b13.q1k chr10 28 817 435589 436377 F 790 98.48 1248 accept 0 ALIGNMENT 73 Y12-13b14.p1k chr05 160 82 438696 438774 C 79 97.47 1414 reject_low 7 ALIGNMENT 0 Y12-13b14.p1k chr13 162 796 372518 372517 F 635 0.00 1414 reject_low 11 ALIGNMENT 0 Y12-13b14.p1k chr07 170 796 73910 73909 F 627 0.00 1414 reject_low 4 ALIGNMENT 0 Y12-13b14.p1k chr10 81 62 378355 378354 C 20 0.00 1414 reject_low 2 ALIGNMENT 0 Y12-13b14.p1k chr05 796 161 438697 438696 C 636 0.00 1414 reject_low 7 ALIGNMENT 72 Y12-13b14.p1k chr13 87 161 586635 586709 F 75 98.67 1414 reject_low 12 ALIGNMENT 0 Y12-13b14.p1k chr12 161 796 687934 687933 F 636 0.00 1414 reject_low 13 ALIGNMENT 0 Y12-13b14.p1k chr07 796 164 823485 823484 C 633 0.00 1414 reject_low 10 ALIGNMENT 0 Y12-13b14.p1k chr13 62 86 372444 372443 F 25 0.00 1414 reject_low 11 ALIGNMENT 74 Y12-13b14.p1k chr15 88 172 663813 663896 F 85 96.47 1414 reject_low 3 ALIGNMENT 0 Y12-13b14.p1k chr13 62 86 586635 586634 F 25 0.00 1414 reject_low 12 ALIGNMENT 0 Y12-13b14.p1k chr08 162 796 85368 85367 F 635 0.00 1414 reject_low 6 ALIGNMENT 0 Y12-13b14.p1k chr13 162 796 586709 586708 F 635 0.00 1414 reject_low 12 ALIGNMENT 76 Y12-13b14.p1k chr05 174 87 469438 469525 C 88 95.45 1414 reject_low 1 ALIGNMENT 72 Y12-13b14.p1k chr13 87 161 372444 372518 F 75 98.67 1414 reject_low 11 ALIGNMENT 0 Y12-13b14.p1k chr05 796 175 469439 469438 C 622 0.00 1414 reject_low 1 ALIGNMENT 0 Y12-13b14.p1k chr15 62 87 663813 663812 F 26 0.00 1414 reject_low 3 ALIGNMENT 885 Y12-13b14.q1k chr11 1052 36 310812 311823 C 1017 96.36 1265 accept 0 ALIGNMENT 72 Y12-13b14.p1k chr13 87 170 420587 420670 F 84 95.24 1414 reject_low 8 ALIGNMENT 0 Y12-13b14.p1k chr11 796 168 379317 379316 C 629 0.00 1414 reject_low 9 ALIGNMENT 73 Y12-13b14.p1k chr11 167 86 379316 379397 C 82 96.34 1414 reject_low 9 ALIGNMENT 0 Y12-13b14.p1k chr13 62 86 420587 420586 F 25 0.00 1414 reject_low 8 ALIGNMENT 75 Y12-13b14.p1k chr10 168 82 378268 378354 C 87 95.40 1414 reject_low 2 ALIGNMENT 0 Y12-13b14.p1k chr07 62 81 412292 412291 F 20 0.00 1414 reject_low 5 ALIGNMENT 0 Y12-13b14.p1k chr15 173 796 663896 663895 F 624 0.00 1414 reject_low 3 ALIGNMENT 74 Y12-13b14.p1k chr08 82 161 85289 85368 F 80 97.50 1414 reject_low 6 ALIGNMENT 0 Y12-13b14.p1k chr07 162 796 412371 412370 F 635 0.00 1414 reject_low 5 ALIGNMENT 71 Y12-13b14.p1k chr12 87 160 687861 687934 F 74 98.65 1414 reject_low 13 ALIGNMENT 937 Y12-13b14.p1k chr11 20 1094 307721 308800 F 1075 96.37 1414 accept 0 ALIGNMENT 0 Y12-13b14.p1k chr07 86 62 823561 823560 C 25 0.00 1414 reject_low 10 ALIGNMENT 0 Y12-13b14.p1k chr07 62 86 73828 73827 F 25 0.00 1414 reject_low 4 ALIGNMENT 0 Y12-13b14.p1k chr08 62 81 85289 85288 F 20 0.00 1414 reject_low 6 ALIGNMENT 0 Y12-13b14.p1k chr10 796 169 378269 378268 C 628 0.00 1414 reject_low 2 ALIGNMENT 0 Y12-13b14.p1k chr05 86 62 469526 469525 C 25 0.00 1414 reject_low 1 ALIGNMENT 74 Y12-13b14.p1k chr07 163 87 823484 823560 C 77 98.70 1414 reject_low 10 ALIGNMENT 0 Y12-13b14.p1k chr13 171 796 420670 420669 F 626 0.00 1414 reject_low 8 ALIGNMENT 80 Y12-13b14.p1k chr07 87 169 73828 73910 F 83 98.80 1414 reject_low 4 ALIGNMENT 74 Y12-13b14.p1k chr07 82 161 412292 412371 F 80 97.50 1414 reject_low 5 ALIGNMENT 0 Y12-13b14.p1k chr11 85 62 379398 379397 C 24 0.00 1414 reject_low 9 ALIGNMENT 0 Y12-13b14.p1k chr05 81 62 438775 438774 C 20 0.00 1414 reject_low 7 ALIGNMENT 0 Y12-13b14.p1k chr12 62 86 687861 687860 F 25 0.00 1414 reject_low 13 ALIGNMENT 903 Y12-13b15.q1k chr07 1100 35 607682 608743 C 1066 96.62 1261 accept 0 ALIGNMENT 911 Y12-13b15.p1k chr07 18 1095 603938 605032 F 1078 96.29 1363 accept 0 ALIGNMENT 0 Y12-13b16.p1k chr07 285 62 405553 405552 C 224 0.00 1370 reject_low 6 ALIGNMENT 85 Y12-13b16.p1k chr10 367 282 355288 355373 C 86 100.00 1370 reject_low 4 ALIGNMENT 0 Y12-13b16.p1k chr07 888 368 405472 405471 C 521 0.00 1370 reject_low 6 ALIGNMENT 0 Y12-13b16.p1k chr11 62 289 162488 162487 F 228 0.00 1370 reject_low 8 ALIGNMENT 87 Y12-13b16.p1k chr10 282 378 374410 374507 F 97 96.91 1370 reject_low 2 ALIGNMENT 79 Y12-13b16.p1k chr07 286 367 828720 828801 F 82 98.78 1370 reject_low 7 ALIGNMENT 74 Y12-13b16.p1k chr07 367 294 736343 736416 C 74 100.00 1370 reject_low 10 ALIGNMENT 1024 Y12-13b16.p1k chr13 22 1240 131552 132782 F 1219 96.14 1370 accept 0 ALIGNMENT 79 Y12-13b16.p1k chr07 367 286 405471 405552 C 82 98.78 1370 reject_low 6 ALIGNMENT 0 Y12-13b16.p1k chr07 62 285 828720 828719 F 224 0.00 1370 reject_low 7 ALIGNMENT 0 Y12-13b16.p1k chr02 888 379 405859 405858 C 510 0.00 1370 reject_low 1 ALIGNMENT 0 Y12-13b16.p1k chr07 368 888 828801 828800 F 521 0.00 1370 reject_low 7 ALIGNMENT 87 Y12-13b16.p1k chr02 378 282 405858 405955 C 97 96.91 1370 reject_low 1 ALIGNMENT 1030 Y12-13b16.q1k chr13 1198 36 135411 136575 C 1163 97.51 1243 accept 0 ALIGNMENT 85 Y12-13b16.p1k chr04 367 282 568877 568962 C 86 100.00 1370 reject_low 3 ALIGNMENT 0 Y12-13b16.p1k chr10 379 888 374507 374506 F 510 0.00 1370 reject_low 2 ALIGNMENT 75 Y12-13b16.p1k chr05 378 286 138653 138745 C 93 93.55 1370 reject_low 5 ALIGNMENT 0 Y12-13b16.p1k chr10 888 368 355289 355288 C 521 0.00 1370 reject_low 4 ALIGNMENT 76 Y12-13b16.p1k chr11 290 368 162488 162566 F 79 98.73 1370 reject_low 8 ALIGNMENT 0 Y12-13b16.p1k chr05 285 62 138746 138745 C 224 0.00 1370 reject_low 5 ALIGNMENT 0 Y12-13b16.p1k chr07 293 62 736417 736416 C 232 0.00 1370 reject_low 10 ALIGNMENT 0 Y12-13b16.p1k chr10 281 62 355374 355373 C 220 0.00 1370 reject_low 4 ALIGNMENT 0 Y12-13b16.p1k chr02 281 62 405956 405955 C 220 0.00 1370 reject_low 1 ALIGNMENT 75 Y12-13b16.p1k chr13 290 367 747887 747964 F 78 98.72 1370 reject_low 9 ALIGNMENT 0 Y12-13b16.p1k chr10 62 281 374410 374409 F 220 0.00 1370 reject_low 2 ALIGNMENT 0 Y12-13b16.p1k chr11 369 888 162566 162565 F 520 0.00 1370 reject_low 8 ALIGNMENT 0 Y12-13b16.p1k chr04 888 368 568878 568877 C 521 0.00 1370 reject_low 3 ALIGNMENT 0 Y12-13b16.p1k chr05 888 379 138654 138653 C 510 0.00 1370 reject_low 5 ALIGNMENT 0 Y12-13b16.p1k chr04 281 62 568963 568962 C 220 0.00 1370 reject_low 3 ALIGNMENT 0 Y12-13b16.p1k chr13 62 289 747887 747886 F 228 0.00 1370 reject_low 9 ALIGNMENT 0 Y12-13b16.p1k chr07 888 368 736344 736343 C 521 0.00 1370 reject_low 10 ALIGNMENT 0 Y12-13b16.p1k chr13 368 888 747964 747963 F 521 0.00 1370 reject_low 9 ALIGNMENT 901 Y12-13b17.q1k chr11 1037 37 619074 620073 C 1001 98.20 1235 accept 0 ALIGNMENT 860 Y12-13b17.p1k chr11 16 994 616174 617154 F 979 96.73 1383 accept 0 ALIGNMENT 922 Y12-13b18.q1k chr16 1119 33 702701 703793 C 1087 96.04 1223 accept 0 ALIGNMENT 1032 Y12-13b18.p1k chr16 34 1275 699343 700591 F 1242 94.69 1380 accept 0 ALIGNMENT 975 Y12-13b19.q1k chr12 28 1213 467281 468457 F 1186 95.95 1220 reject_low 1 ALIGNMENT 1041 Y12-13b19.p1k chr12 1279 20 452479 453736 C 1260 95.24 1356 reject_low 2 ALIGNMENT 1048 Y12-13b19.p1k chr12 1299 20 461594 462873 C 1280 95.00 1356 accept 0 ALIGNMENT 975 Y12-13b19.q1k chr12 28 1213 458144 459320 F 1186 95.95 1220 accept 0 ALIGNMENT 927 Y12-13b20.q1k chr04 1125 29 1486058 1487167 C 1097 96.17 1194 accept 0 ALIGNMENT 1009 Y12-13b20.p1k chr04 23 1142 1482568 1483697 F 1120 97.68 1320 accept 0 ALIGNMENT 1013 Y12-13b21.p1k chr11 20 1213 545548 546760 F 1194 96.40 1320 accept 0 ALIGNMENT 949 Y12-13b21.q1k chr11 1114 30 549296 550382 C 1085 96.59 1146 accept 0 ALIGNMENT 1007 Y12-13b22.p1k chr16 25 1189 878600 879774 F 1165 96.39 1330 accept 0 ALIGNMENT 925 Y12-13b22.q1k chr16 1172 37 881908 883048 C 1136 94.89 1175 accept 0 ALIGNMENT 630 Y12-13b23.q1k chr02 34 818 485859 486660 F 785 94.78 1004 accept 0 ALIGNMENT 1081 Y12-13b23.p1k chr02 1233 17 488581 489792 C 1217 96.96 1292 accept 0 ALIGNMENT 1019 Y12-13b24.q1k chr05 28 1169 218520 219664 F 1142 96.85 1170 accept 0 ALIGNMENT 901 Y12-13b24.p1k chr05 1085 20 222381 223432 C 1066 96.06 1328 accept 0 ALIGNMENT 0 Y12-13c01.q1k chr12 62 78 139309 139308 F 17 0.00 1219 reject_low 1 ALIGNMENT 958 Y12-13c01.q1k chr12 1129 38 138290 139373 C 1092 97.44 1219 accept 0 ALIGNMENT 970 Y12-13c01.p1k chr12 17 1138 134583 135717 F 1122 96.79 1368 accept 0 ALIGNMENT 24 Y12-13c01.q1k chr12 79 102 139309 139332 F 24 100.00 1219 reject_low 1 ALIGNMENT 0 Y12-13c01.q1k chr12 103 819 139332 139331 F 717 0.00 1219 reject_low 1 ALIGNMENT 0 Y12-13c02.p1k chr04 93 858 651498 651497 F 766 0.00 1399 reject_low 13 ALIGNMENT 63 Y12-13c02.p1k chr09 92 20 205217 205290 C 73 97.26 1399 reject_low 8 ALIGNMENT 63 Y12-13c02.p1k chr11 20 92 202556 202629 F 73 97.26 1399 reject_low 10 ALIGNMENT 59 Y12-13c02.p1k chr12 98 20 373994 374073 C 79 93.67 1399 reject_low 11 ALIGNMENT 0 Y12-13c02.p1k chr16 858 103 56282 56281 C 756 0.00 1399 reject_low 16 ALIGNMENT 48 Y12-13c02.p1k chr16 102 26 56281 56356 C 77 89.61 1399 reject_low 16 ALIGNMENT 57 Y12-13c02.p1k chr07 20 92 319692 319765 F 73 94.52 1399 reject_low 15 ALIGNMENT 0 Y12-13c02.p1k chr12 92 62 592638 592637 C 31 0.00 1399 accept 0 ALIGNMENT 0 Y12-13c02.p1k chr10 226 858 617949 617948 F 633 0.00 1399 reject_low 2 ALIGNMENT 63 Y12-13c02.p1k chr07 92 20 712210 712283 C 73 97.26 1399 reject_low 7 ALIGNMENT 0 Y12-13c02.p1k chr09 858 93 210306 210305 C 766 0.00 1399 reject_low 9 ALIGNMENT 0 Y12-13c02.p1k chr12 858 99 373995 373994 C 760 0.00 1399 reject_low 11 ALIGNMENT 0 Y12-13c02.p1k chr15 858 103 854265 854264 C 756 0.00 1399 reject_low 4 ALIGNMENT 0 Y12-13c02.p1k chr12 226 858 732208 732207 F 633 0.00 1399 reject_low 1 ALIGNMENT 0 Y12-13c02.p1k chr16 858 93 769318 769317 C 766 0.00 1399 reject_low 12 ALIGNMENT 65 Y12-13c02.p1k chr15 102 20 854264 854346 C 83 95.18 1399 reject_low 4 ALIGNMENT 0 Y12-13c02.p1k chr14 858 95 546738 546737 C 764 0.00 1399 reject_low 5 ALIGNMENT 57 Y12-13c02.p1k chr04 20 92 651425 651498 F 73 94.52 1399 reject_low 13 ALIGNMENT 63 Y12-13c02.p1k chr09 92 20 210305 210378 C 73 97.26 1399 reject_low 9 ALIGNMENT 120 Y12-13c02.p1k chr10 96 225 617820 617949 F 130 98.46 1399 reject_low 2 ALIGNMENT 0 Y12-13c02.p1k chr12 62 97 732081 732080 F 36 0.00 1399 reject_low 1 ALIGNMENT 0 Y12-13c02.p1k chr10 62 95 617820 617819 F 34 0.00 1399 reject_low 2 ALIGNMENT 0 Y12-13c02.p1k chr11 93 858 202629 202628 F 766 0.00 1399 reject_low 10 ALIGNMENT 65 Y12-13c02.p1k chr14 94 20 546737 546812 C 75 97.33 1399 reject_low 5 ALIGNMENT 0 Y12-13c02.p1k chr07 93 858 319765 319764 F 766 0.00 1399 reject_low 15 ALIGNMENT 0 Y12-13c02.p1k chr09 858 93 205218 205217 C 766 0.00 1399 reject_low 8 ALIGNMENT 0 Y12-13c02.p1k chr07 858 97 707196 707195 C 762 0.00 1399 reject_low 6 ALIGNMENT 859 Y12-13c02.p1k chr12 1124 93 591595 592637 C 1032 95.83 1399 accept 0 ALIGNMENT 64 Y12-13c02.p1k chr01 142 20 182565 182687 C 123 86.99 1399 reject_low 3 ALIGNMENT 0 Y12-13c02.p1k chr04 858 93 1023132 1023131 C 766 0.00 1399 reject_low 14 ALIGNMENT 876 Y12-13c02.q1k chr12 38 1103 589249 590306 F 1066 96.25 1244 accept 0 ALIGNMENT 0 Y12-13c02.p1k chr07 858 93 712211 712210 C 766 0.00 1399 reject_low 7 ALIGNMENT 57 Y12-13c02.p1k chr04 92 20 1023131 1023204 C 73 94.52 1399 reject_low 14 ALIGNMENT 0 Y12-13c02.p1k chr01 858 143 182566 182565 C 716 0.00 1399 reject_low 3 ALIGNMENT 63 Y12-13c02.p1k chr07 96 20 707195 707272 C 77 96.10 1399 reject_low 6 ALIGNMENT 60 Y12-13c02.p1k chr16 92 20 769317 769390 C 73 95.89 1399 reject_low 12 ALIGNMENT 121 Y12-13c02.p1k chr12 98 225 732081 732208 F 128 99.22 1399 reject_low 1 ALIGNMENT 870 Y12-13c03.p1k chr08 998 20 384665 385659 C 979 98.16 1344 accept 0 ALIGNMENT 397 Y12-13c03.q1k chr08 55 537 381323 381808 F 483 95.03 1157 accept 0 ALIGNMENT 849 Y12-13c04.p1k chr07 973 23 229459 230413 C 951 97.58 1407 accept 0 ALIGNMENT 990 Y12-13c05.q1k chr10 1206 35 48346 49505 C 1172 96.42 1220 accept 0 ALIGNMENT 984 Y12-13c05.p1k chr10 19 1139 44076 45210 F 1121 97.06 1385 accept 0 ALIGNMENT 951 Y12-13c06.q1k chr05 1165 35 41874 42996 C 1131 95.58 1200 accept 0 ALIGNMENT 964 Y12-13c06.p1k chr05 16 1181 38400 39563 F 1166 95.71 1419 accept 0 ALIGNMENT 0 Y12-13c07.p1k chr16 871 662 822268 822267 C 210 0.00 1408 reject_low 1 ALIGNMENT 899 Y12-13c07.q1k chr16 1013 35 825093 826070 C 979 98.16 1255 accept 0 ALIGNMENT 23 Y12-13c07.p1k chr16 661 638 822267 822290 C 24 100.00 1408 reject_low 1 ALIGNMENT 0 Y12-13c07.p1k chr16 637 62 822291 822290 C 576 0.00 1408 reject_low 1 ALIGNMENT 1010 Y12-13c07.p1k chr16 18 1174 821644 822816 F 1157 96.89 1408 accept 0 ALIGNMENT 685 Y12-13c08.p1k chr16 24 947 133513 134424 F 924 92.75 1359 accept 0 ALIGNMENT 767 Y12-13c08.q1k chr16 912 27 137152 138037 C 886 96.16 1238 accept 0 ALIGNMENT 530 Y12-13c09.p1k chr07 707 16 320811 321500 C 692 93.64 1484 accept 0 ALIGNMENT 522 Y12-13c09.q1k chr07 33 623 316718 317308 F 591 97.29 1349 accept 0 ALIGNMENT 644 Y12-13c10.q1k chr12 32 748 225485 226201 F 717 97.77 1286 accept 0 ALIGNMENT 836 Y12-13c10.p1k chr12 959 19 229207 230150 C 941 97.56 1381 accept 0 ALIGNMENT 581 Y12-13c11.q1k chr03 34 697 286468 287130 F 664 97.29 1280 accept 0 ALIGNMENT 848 Y12-13c11.p1k chr03 1016 19 288676 289674 C 998 96.39 1428 accept 0 ALIGNMENT 1063 Y12-13c12.p1k chr15 21 1360 319515 320859 F 1340 93.96 1503 accept 0 ALIGNMENT 973 Y12-13c12.q1k chr15 1212 35 322442 323638 C 1178 95.93 1261 accept 0 ALIGNMENT 868 Y12-13c13.p1k chr14 1207 19 745785 746977 C 1189 92.85 1392 accept 0 ALIGNMENT 699 Y12-13c13.q1k chr14 34 831 742602 743398 F 798 96.99 1293 accept 0 ALIGNMENT 1005 Y12-13c14.p1k chr09 1131 19 195362 196482 C 1113 97.75 1401 accept 0 ALIGNMENT 684 Y12-13c14.q1k chr09 26 757 192384 193116 F 732 98.91 1235 accept 0 ALIGNMENT 830 Y12-13c16.p1k chr14 18 951 281473 282408 F 934 97.54 1366 accept 0 ALIGNMENT 998 Y12-13c16.q1k chr14 1163 34 284378 285511 C 1130 96.99 1248 accept 0 ALIGNMENT 690 Y12-13c17.q1k chr10 29 1054 722805 723827 F 1026 90.25 1259 accept 0 ALIGNMENT 911 Y12-13c18.p1k chr08 1054 19 226164 227188 C 1036 97.01 1405 accept 0 ALIGNMENT 939 Y12-13c18.q1k chr08 36 1136 221650 222746 F 1101 96.09 1260 accept 0 ALIGNMENT 954 Y12-13c19.p1k chr10 1131 28 286636 287745 C 1104 96.74 1364 accept_chi 0 ALIGNMENT 891 Y12-13c19.q1k chr14 37 1136 259413 260512 F 1100 94.45 1182 accept_chi 1 ALIGNMENT 985 Y12-13c21.p1k chr06 17 1150 235767 236916 F 1134 97.27 1289 accept 0 ALIGNMENT 967 Y12-13c21.q1k chr06 1111 36 239721 240786 C 1076 97.68 1175 accept 0 ALIGNMENT 24 Y12-13c22.q1k chr04 860 900 383099 383139 F 41 87.80 1172 reject_low 1,2,3,4 ALIGNMENT 93 Y12-13c22.q1k chr04 942 1140 383913 384106 F 199 83.42 1172 reject_low 1 ALIGNMENT 0 Y12-13c22.q1k chr04 901 974 383140 383537 F 74 0.00 1172 reject_low 2,4 ALIGNMENT 0 Y12-13c22.q1k chr04 901 974 383140 384557 F 74 0.00 1172 reject_low 3 ALIGNMENT 74 Y12-13c22.q1k chr04 1038 1171 383564 383691 F 134 88.06 1172 reject_low 2 ALIGNMENT 36 Y12-13c22.q1k chr04 978 1017 384255 384294 F 40 97.50 1172|13,0 reject_low 4 ALIGNMENT 966 Y12-13c22.p1k chr04 1155 24 386578 387730 C 1132 96.29 1282 accept 0 ALIGNMENT 894 Y12-13c22.q1k chr04 36 1067 382454 383484 F 1032 96.32 1172 accept 0 ALIGNMENT 0 Y12-13c22.q1k chr04 901 941 383140 383912 F 41 0.00 1172 reject_low 1 ALIGNMENT 25 Y12-13c22.q1k chr04 975 1002 383538 383565 F 28 96.43 1172|0,12 reject_low 2,4 ALIGNMENT 28 Y12-13c22.q1k chr04 975 1008 384558 384591 F 34 94.12 1172 reject_low 3 ALIGNMENT 0 Y12-13c22.q1k chr04 991 990 383554 384267 F 0 0.00 1172 reject_low 4 ALIGNMENT 0 Y12-13c22.q1k chr04 62 859 383099 383098 F 798 0.00 1172 reject_low 1,2,3,4 ALIGNMENT 0 Y12-13c22.q1k chr04 1003 1037 383566 383563 F 35 0.00 1172 reject_low 2 ALIGNMENT 490 Y12-13c23.p1k chr06 43 854 235797 236604 F 812 87.81 1429 accept 0 ALIGNMENT 977 Y12-13c24.q1k chr12 35 1146 292462 293558 F 1112 98.02 1167 accept 0 ALIGNMENT 934 Y12-13c24.p1k chr12 1090 28 297295 298349 C 1063 97.65 1368 accept 0 ALIGNMENT 183 Y12-13d01.p1k chr10 94 583 429817 430297 F 490 80.41 1442 accept_chi 1 ALIGNMENT 277 Y12-13d01.q1k chr12 123 796 1009342 1010010 F 674 82.34 1400 accept_chi 0 ALIGNMENT 981 Y12-13d02.p1k chr07 1133 16 237231 238352 C 1118 97.14 1389 accept 0 ALIGNMENT 914 Y12-13d02.q1k chr07 38 1128 234128 235216 F 1091 95.51 1223 accept 0 ALIGNMENT 933 Y12-13d03.p1k chr07 1111 23 229314 230413 C 1089 96.60 1367 accept 0 ALIGNMENT 851 Y12-13d04.p1k chr13 996 23 799739 800720 C 974 96.71 1318 accept 0 ALIGNMENT 750 Y12-13d05.q1k chr12 860 33 462315 463135 C 828 97.58 1281 accept 0 ALIGNMENT 925 Y12-13d05.p1k chr12 20 1104 457337 458426 F 1085 95.94 1464 accept 0 ALIGNMENT 925 Y12-13d05.p1k chr12 20 1104 466474 467563 F 1085 95.94 1464 reject_low 1 ALIGNMENT 750 Y12-13d05.q1k chr12 860 33 453178 453998 C 828 97.58 1281 reject_low 2 ALIGNMENT 22 Y12-13d06.p1k chr01 805 867 189635 189696 F 63 82.54 1500 reject_low 29 ALIGNMENT 37 Y12-13d06.p1k chr08 901 645 116438 116696 C 257 75.88 1500 reject_low 21 ALIGNMENT 0 Y12-13d06.p1k chr04 637 62 434708 434707 C 576 0.00 1500 reject_low 3 ALIGNMENT 0 Y12-13d06.p1k chr03 644 62 124412 124411 C 583 0.00 1500 reject_low 24 ALIGNMENT 0 Y12-13d06.p1k chr05 626 62 443697 443696 C 565 0.00 1500 reject_low 6 ALIGNMENT 35 Y12-13d06.p1k chr03 866 645 142803 143026 C 222 76.13 1500 reject_low 23 ALIGNMENT 54 Y12-13d06.p1k chr03 901 627 168617 168895 C 275 77.45 1500 reject_low 4 ALIGNMENT 0 Y12-13d06.p1k chr03 644 62 143027 143026 C 583 0.00 1500 reject_low 23 ALIGNMENT 41 Y12-13d06.p1k chr12 901 645 818095 818352 C 257 76.26 1500 reject_low 18 ALIGNMENT 82 Y12-13d06.p1k chr04 901 638 434442 434707 C 264 81.06 1500 reject_low 3 ALIGNMENT 26 Y12-13d06.p1k chr04 645 901 1151082 1151338 F 257 75.88 1500 reject_low 26 ALIGNMENT 0 Y12-13d06.p1k chr12 644 62 215368 215367 C 583 0.00 1500 reject_low 20 ALIGNMENT 0 Y12-13d06.p1k chr12 644 62 818353 818352 C 583 0.00 1500 reject_low 18 ALIGNMENT 172 Y12-13d06.p1k chr10 628 918 543395 543689 F 291 90.03 1500 reject_low 1 ALIGNMENT 43 Y12-13d06.p1k chr02 645 901 265212 265470 F 257 76.65 1500 reject_low 14 ALIGNMENT 40 Y12-13d06.p1k chr03 645 901 151568 151826 F 257 76.26 1500 reject_low 19 ALIGNMENT 43 Y12-13d06.p1k chr14 901 645 96632 96890 C 257 76.65 1500 reject_low 15 ALIGNMENT 54 Y12-13d06.p1k chr04 901 627 883904 884182 C 275 77.45 1500 reject_low 5 ALIGNMENT 0 Y12-13d06.p1k chr04 626 62 884183 884182 C 565 0.00 1500 reject_low 5 ALIGNMENT 505 Y12-13d06.p1k chr10 563 20 538349 538894 C 544 98.71 1500|2,0 accept 0 ALIGNMENT 0 Y12-13d06.p1k chr12 62 626 593180 593179 F 565 0.00 1500 reject_low 9 ALIGNMENT 46 Y12-13d06.p1k chr02 645 901 226675 226933 F 257 77.04 1500 reject_low 11 ALIGNMENT 0 Y12-13d06.p1k chr03 62 644 151568 151567 F 583 0.00 1500 reject_low 19 ALIGNMENT 31 Y12-13d06.p1k chr15 901 645 980277 980535 C 257 75.10 1500 reject_low 25 ALIGNMENT 42 Y12-13d06.p1k chr07 645 901 541403 541667 F 257 76.26 1500 reject_low 17 ALIGNMENT 0 Y12-13d06.p1k chr14 644 62 102473 102472 C 583 0.00 1500 reject_low 16 ALIGNMENT 54 Y12-13d06.p1k chr14 627 901 524763 525041 F 275 77.45 1500 reject_low 8 ALIGNMENT 39 Y12-13d06.p1k chr12 901 645 215103 215367 C 257 75.88 1500 reject_low 20 ALIGNMENT 417 Y12-13d06.p1k chr10 1174 559 537419 538016 C 616 92.86 1500|0,3 accept 0 ALIGNMENT 20 Y12-13d06.p1k chr03 885 848 151479 151517 C 38 86.84 1500 reject_low 28 ALIGNMENT 0 Y12-13d06.p1k chr01 62 644 183187 183186 F 583 0.00 1500 reject_low 27 ALIGNMENT 0 Y12-13d06.p1k chr13 644 62 357285 357284 C 583 0.00 1500 reject_low 13 ALIGNMENT 53 Y12-13d06.p1k chr12 627 901 593180 593458 F 275 77.45 1500 reject_low 9 ALIGNMENT 0 Y12-13d06.p1k chr01 744 804 189571 189634 F 61 0.00 1500 reject_low 29 ALIGNMENT 43 Y12-13d06.p1k chr14 901 645 102214 102472 C 257 76.65 1500 reject_low 16 ALIGNMENT 54 Y12-13d06.p1k chr05 901 627 443415 443696 C 275 77.45 1500 reject_low 6 ALIGNMENT 0 Y12-13d06.p1k chr03 626 62 168896 168895 C 565 0.00 1500 reject_low 4 ALIGNMENT 0 Y12-13d06.p1k chr02 62 644 226675 226674 F 583 0.00 1500 reject_low 11 ALIGNMENT 54 Y12-13d06.p1k chr14 627 901 519197 519475 F 275 77.45 1500 reject_low 7 ALIGNMENT 0 Y12-13d06.p1k chr10 62 626 538050 538049 F 565 0.00 1500 reject_low 10 ALIGNMENT 35 Y12-13d06.p1k chr02 901 748 258687 258840 C 154 77.27 1500 reject_low 22 ALIGNMENT 29 Y12-13d06.p1k chr01 627 743 189453 189570 F 117 78.63 1500 reject_low 29 ALIGNMENT 0 Y12-13d06.p1k chr10 744 850 538167 538166 F 107 0.00 1500 reject_low 10 ALIGNMENT 0 Y12-13d06.p1k chr14 62 626 524763 524762 F 565 0.00 1500 reject_low 8 ALIGNMENT 0 Y12-13d06.p1k chr02 747 62 258841 258840 C 686 0.00 1500 reject_low 22 ALIGNMENT 0 Y12-13d06.p1k chr14 62 626 519197 519196 F 565 0.00 1500 reject_low 7 ALIGNMENT 0 Y12-13d06.p1k chr14 644 62 96891 96890 C 583 0.00 1500 reject_low 15 ALIGNMENT 0 Y12-13d06.p1k chr03 847 62 151518 151517 C 786 0.00 1500 reject_low 28 ALIGNMENT 0 Y12-13d06.p1k chr04 62 644 1151082 1151081 F 583 0.00 1500 reject_low 26 ALIGNMENT 31 Y12-13d06.p1k chr03 901 645 124153 124411 C 257 75.10 1500 reject_low 24 ALIGNMENT 0 Y12-13d06.p1k chr07 62 644 541403 541402 F 583 0.00 1500 reject_low 17 ALIGNMENT 0 Y12-13d06.p1k chr02 62 644 259627 259626 F 583 0.00 1500 reject_low 12 ALIGNMENT 0 Y12-13d06.p1k chr01 62 626 189453 189452 F 565 0.00 1500 reject_low 29 ALIGNMENT 0 Y12-13d06.p1k chr08 644 62 116697 116696 C 583 0.00 1500 reject_low 21 ALIGNMENT 46 Y12-13d06.p1k chr02 645 901 259627 259885 F 257 77.04 1500 reject_low 12 ALIGNMENT 20 Y12-13d06.p1k chr01 645 901 183187 183446 F 257 73.54 1500 reject_low 27 ALIGNMENT 41 Y12-13d06.p1k chr10 627 743 538050 538167 F 117 82.05 1500 reject_low 10 ALIGNMENT 950 Y12-13d06.q1k chr10 33 1149 533317 534418 F 1117 96.96 1216 accept 0 ALIGNMENT 0 Y12-13d06.p1k chr10 62 627 543395 543394 F 566 0.00 1500 reject_low 1 ALIGNMENT 0 Y12-13d06.p1k chr10 561 562 538014 538350 C 0 0.00 1500 accept 0 ALIGNMENT 0 Y12-13d06.p1k chr03 62 621 149508 149507 F 560 0.00 1500 reject_low 2 ALIGNMENT 0 Y12-13d06.p1k chr02 62 644 265212 265211 F 583 0.00 1500 reject_low 14 ALIGNMENT 0 Y12-13d06.p1k chr15 644 62 980536 980535 C 583 0.00 1500 reject_low 25 ALIGNMENT 69 Y12-13d06.p1k chr03 622 885 149508 149770 F 264 79.55 1500 reject_low 2 ALIGNMENT 46 Y12-13d06.p1k chr13 901 645 357026 357284 C 257 77.04 1500 reject_low 13 ALIGNMENT 0 Y12-13d07.q1k chr04 280 330 1503873 1504472 F 51 0.00 1231 reject_low 3 ALIGNMENT 0 Y12-13d07.q1k chr15 62 364 1060654 1060653 F 303 0.00 1231 reject_low 4 ALIGNMENT 172 Y12-13d07.q1k chr04 541 828 1504068 1504354 F 288 86.81 1231 reject_low 2 ALIGNMENT 0 Y12-13d07.q1k chr15 62 231 1060764 1060763 F 170 0.00 1231 reject_low 5 ALIGNMENT 0 Y12-13d07.q1k chr04 280 330 1503873 1504262 F 51 0.00 1231 reject_low 1 ALIGNMENT 0 Y12-13d07.q1k chr04 118 234 1503807 1503827 F 117 0.00 1231 reject_low 1,2,3 ALIGNMENT 70 Y12-13d07.q1k chr04 40 117 1503729 1503806 F 78 98.72 1231 reject_bad_break 0 reject_low 1,2,3 ALIGNMENT 0 Y12-13d07.q1k chr04 280 540 1503873 1504067 F 261 0.00 1231 reject_low 2 ALIGNMENT 0 Y12-13d07.q1k chr04 518 634 1504659 1504658 F 117 0.00 1231 reject_low 3 ALIGNMENT 35 Y12-13d07.q1k chr15 365 432 1060906 1060973 F 68 83.82 1231 reject_low 5 ALIGNMENT 148 Y12-13d07.q1k chr04 331 517 1504473 1504659 F 187 93.05 1231 reject_low 3 ALIGNMENT 835 Y12-13d07.p1k chr04 920 19 1506989 1507889 C 902 97.89 1442 reject_bad_break 0 ALIGNMENT 0 Y12-13d07.q1k chr15 433 634 1060973 1060972 F 202 0.00 1231 reject_low 5 ALIGNMENT 295 Y12-13d07.q1k chr04 331 689 1504263 1504621 F 359 94.15 1231 reject_low 1 ALIGNMENT 349 Y12-13d07.q1k chr04 232 689 1503969 1504411 F 458 93.45 1231 reject_bad_break 0 ALIGNMENT 0 Y12-13d07.q1k chr04 690 692 1504412 1504429 F 3 0.00 1231 reject_bad_break 0 ALIGNMENT 35 Y12-13d07.q1k chr04 693 828 1504430 1504564 F 136 75.74 1231 reject_bad_break 0 ALIGNMENT 0 Y12-13d07.q1k chr04 118 231 1503807 1503968 F 114 0.00 1231 reject_bad_break 0 ALIGNMENT 62 Y12-13d07.q1k chr15 365 477 1060654 1060766 F 113 84.96 1231 reject_low 4 ALIGNMENT 0 Y12-13d07.q1k chr15 478 634 1060766 1060765 F 157 0.00 1231 reject_low 4 ALIGNMENT 0 Y12-13d07.q1k chr15 271 364 1060803 1060905 F 94 0.00 1231 reject_low 5 ALIGNMENT 30 Y12-13d07.q1k chr15 232 270 1060764 1060802 F 39 94.87 1231 reject_low 5 ALIGNMENT 40 Y12-13d07.q1k chr04 235 279 1503828 1503872 F 45 97.78 1231 reject_low 1,2,3 ALIGNMENT 383 Y12-13d08.q1k chr03 1092 279 303015 303820 C 814 84.64 1218 reject_low 3 ALIGNMENT 0 Y12-13d08.q1k chr03 278 62 303821 303820 C 217 0.00 1218 reject_low 3 ALIGNMENT 927 Y12-13d08.p1k chr14 21 1197 751126 752310 F 1177 93.80 1410 accept 0 ALIGNMENT 516 Y12-13d08.p1k chr02 31 1095 187652 188718 F 1065 83.57 1410 reject_low 4 ALIGNMENT 866 Y12-13d08.p1k chr09 1089 21 14294 15365 C 1069 94.48 1410 reject_low 1 ALIGNMENT 936 Y12-13d08.q1k chr14 1201 29 754902 756082 C 1173 94.71 1218 accept 0 ALIGNMENT 866 Y12-13d08.p1k chr10 1089 21 14277 15348 C 1069 94.48 1410 reject_low 2 ALIGNMENT 850 Y12-13d09.p1k chr08 15 1022 124257 125266 F 1008 95.44 1501 accept 0 ALIGNMENT 742 Y12-13d09.q1k chr08 897 34 127916 128768 C 864 96.99 1405 accept 0 ALIGNMENT 933 Y12-13d10.p1k chr12 1093 20 317785 318859 C 1074 96.55 1503 accept 0 ALIGNMENT 803 Y12-13d10.q1k chr12 32 900 314068 314939 F 869 98.39 1290 accept 0 ALIGNMENT 809 Y12-13d11.p1k chr04 962 15 1455184 1456127 C 948 96.10 1418 accept 0 ALIGNMENT 870 Y12-13d11.q1k chr04 28 1044 1451524 1452547 F 1017 96.26 1270 accept 0 ALIGNMENT 628 Y12-13d12.q1k chr15 751 31 816466 817184 C 721 97.09 1295 accept 0 ALIGNMENT 968 Y12-13d12.p1k chr15 23 1148 811561 812691 F 1126 96.63 1407 accept 0 ALIGNMENT 847 Y12-13d13.q1k chr14 37 1069 430926 431960 F 1033 95.06 1255 accept 0 ALIGNMENT 854 Y12-13d13.p1k chr14 1004 16 435849 436855 C 989 97.17 1381 accept 0 ALIGNMENT 436 Y12-13d14.p1k chr14 850 17 754688 755513 C 834 85.85 1391 reject_low 1 ALIGNMENT 865 Y12-13d14.p1k chr03 1034 17 302491 303511 C 1018 96.46 1391 accept 0 ALIGNMENT 859 Y12-13d14.q1k chr03 33 1033 298107 299104 F 1001 96.10 1272 accept 0 ALIGNMENT 853 Y12-13d15.p1k chr07 23 984 435731 436683 F 962 98.34 1589 accept 0 ALIGNMENT 848 Y12-13d15.q1k chr07 980 31 439399 440345 C 950 97.68 1246 accept 0 ALIGNMENT 996 Y12-13d16.p1k chr12 23 1215 200620 201826 F 1193 95.64 1393 accept 0 ALIGNMENT 1036 Y12-13d16.q1k chr12 1231 36 203303 204511 C 1196 96.91 1233 accept 0 ALIGNMENT 30 Y12-13d17.q1k chr07 74 35 327924 327963 C 40 95.00 1289 reject_low 1 ALIGNMENT 798 Y12-13d17.q1k chr04 912 35 944525 945401 C 878 97.95 1289 accept 0 ALIGNMENT 0 Y12-13d17.q1k chr07 778 75 327925 327924 C 704 0.00 1289 reject_low 1 ALIGNMENT 912 Y12-13d17.p1k chr04 21 1075 939420 940465 F 1055 96.59 1451 accept 0 ALIGNMENT 0 Y12-13d18.q1k chr02 671 404 259580 259579 C 268 0.00 1324 ambiguous_trans 17 ALIGNMENT 0 Y12-13d18.q1k chr07 404 671 817726 817725 F 268 0.00 1324 ambiguous_trans 13 ALIGNMENT 0 Y12-13d18.q1k chr14 671 404 102553 102552 C 268 0.00 1324 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-13d18.q1k chr15 671 289 594631 594630 C 383 0.00 1324 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-13d18.q1k chr07 671 404 535219 535218 C 268 0.00 1324 ambiguous_trans_ua 7 ALIGNMENT 303 Y12-13d18.q1k chr14 75 403 96610 96938 F 329 99.39 1324 ambiguous_trans 8 ALIGNMENT 306 Y12-13d18.q1k chr13 75 403 362586 362914 F 329 99.70 1324 ambiguous_trans 5 ALIGNMENT 0 Y12-13d18.q1k chr11 408 671 517427 517426 F 264 0.00 1324 ambiguous_trans_ua 2 ALIGNMENT 81 Y12-13d18.q1k chr15 288 159 594630 594759 C 130 90.00 1324 ambiguous_trans_ua 23 ALIGNMENT 276 Y12-13d18.q1k chr10 407 75 472376 472714 C 333 96.40 1324 ambiguous_trans 12 ALIGNMENT 283 Y12-13d18.q1k chr02 403 95 259579 259887 C 309 99.35 1324 ambiguous_trans 17 ALIGNMENT 0 Y12-13d18.q1k chr08 62 94 543630 543629 F 33 0.00 1324 ambiguous_trans 18 ALIGNMENT 303 Y12-13d18.q1k chr07 403 75 535218 535546 C 329 99.39 1324 ambiguous_trans_ua 7 ALIGNMENT 306 Y12-13d18.q1k chr14 75 408 102192 102525 F 334 99.10 1324 ambiguous_trans 1 ALIGNMENT 286 Y12-13d18.q1k chr07 95 403 823000 823308 F 309 99.68 1324 ambiguous_trans 14 ALIGNMENT 0 Y12-13d18.q1k chr01 408 671 166164 166163 F 264 0.00 1324 ambiguous_trans 21 ALIGNMENT 0 Y12-13d18.q1k chr07 97 62 817388 817387 C 36 0.00 1324 ambiguous_trans 24 ALIGNMENT 286 Y12-13d18.q1k chr15 403 95 600406 600714 C 309 99.68 1324 ambiguous_trans 16 ALIGNMENT 211 Y12-13d18.q1k chr01 74 403 160238 160572 F 330 90.30 1324 ambiguous_trans 22 ALIGNMENT 308 Y12-13d18.q1k chr02 403 74 226627 226956 C 330 99.70 1324 ambiguous_trans 3 ALIGNMENT 0 Y12-13d18.q1k chr08 404 671 543938 543937 F 268 0.00 1324 ambiguous_trans 18 ALIGNMENT 283 Y12-13d18.q1k chr13 403 95 184173 184481 C 309 99.35 1324 ambiguous_trans 19 ALIGNMENT 26 Y12-13d18.q1k chr14 403 377 102552 102578 C 27 100.00 1324 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-13d18.q1k chr15 94 62 595133 595132 C 33 0.00 1324 ambiguous_trans 15 ALIGNMENT 0 Y12-13d18.q1k chr15 671 404 600407 600406 C 268 0.00 1324 ambiguous_trans 16 ALIGNMENT 286 Y12-13d18.q1k chr15 403 95 594824 595132 C 309 99.68 1324 ambiguous_trans 15 ALIGNMENT 0 Y12-13d18.q1k chr13 671 404 184174 184173 C 268 0.00 1324 ambiguous_trans 19 ALIGNMENT 717 Y12-13d18.p1k chr12 17 851 958901 959736 F 835 96.77 1395 accept 0 ALIGNMENT 0 Y12-13d18.q1k chr13 94 62 184482 184481 C 33 0.00 1324 ambiguous_trans 19 ALIGNMENT 0 Y12-13d18.q1k chr07 404 671 823308 823307 F 268 0.00 1324 ambiguous_trans 14 ALIGNMENT 0 Y12-13d18.q1k chr13 404 671 357332 357331 F 268 0.00 1324 ambiguous_trans 4 ALIGNMENT 308 Y12-13d18.q1k chr11 75 407 517095 517427 F 333 99.40 1324 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-13d18.q1k chr07 671 404 401966 401965 C 268 0.00 1324 ambiguous_trans_ua 11 ALIGNMENT 283 Y12-13d18.q1k chr08 95 403 543630 543938 F 309 99.35 1324 ambiguous_trans 18 ALIGNMENT 0 Y12-13d18.q1k chr07 62 94 823000 822999 F 33 0.00 1324 ambiguous_trans 14 ALIGNMENT 283 Y12-13d18.q1k chr13 403 95 189755 190063 C 309 99.35 1324 ambiguous_trans 20 ALIGNMENT 0 Y12-13d18.q1k chr13 671 404 189756 189755 C 268 0.00 1324 ambiguous_trans 20 ALIGNMENT 0 Y12-13d18.q1k chr13 94 62 190064 190063 C 33 0.00 1324 ambiguous_trans 20 ALIGNMENT 0 Y12-13d18.q1k chr07 671 210 817279 817278 C 462 0.00 1324 ambiguous_trans 24 ALIGNMENT 0 Y12-13d18.q1k chr01 404 671 160572 160571 F 268 0.00 1324 ambiguous_trans 22 ALIGNMENT 0 Y12-13d18.q1k chr11 404 671 458111 458110 F 268 0.00 1324 ambiguous_trans_ua 10 ALIGNMENT 0 Y12-13d18.q1k chr15 94 62 600715 600714 C 33 0.00 1324 ambiguous_trans 16 ALIGNMENT 0 Y12-13d18.q1k chr07 62 94 817418 817417 F 33 0.00 1324 ambiguous_trans 13 ALIGNMENT 0 Y12-13d18.q1k chr13 404 671 362914 362913 F 268 0.00 1324 ambiguous_trans 5 ALIGNMENT 0 Y12-13d18.q1k chr10 671 408 472377 472376 C 264 0.00 1324 ambiguous_trans 12 ALIGNMENT 0 Y12-13d18.q1k chr02 671 404 221044 221043 C 268 0.00 1324 ambiguous_trans 9 ALIGNMENT 0 Y12-13d18.q1k chr14 409 671 102525 102524 F 263 0.00 1324 ambiguous_trans 1 ALIGNMENT 0 Y12-13d18.q1k chr02 94 62 259888 259887 C 33 0.00 1324 ambiguous_trans 17 ALIGNMENT 0 Y12-13d18.q1k chr14 404 671 96938 96937 F 268 0.00 1324 ambiguous_trans 8 ALIGNMENT 286 Y12-13d18.q1k chr07 95 403 817418 817726 F 309 99.68 1324 ambiguous_trans 13 ALIGNMENT 0 Y12-13d18.q1k chr14 376 62 102579 102578 C 315 0.00 1324 ambiguous_trans_ua 25 ALIGNMENT 291 Y12-13d18.q1k chr11 75 403 457783 458111 F 329 98.18 1324 ambiguous_trans_ua 10 ALIGNMENT 299 Y12-13d18.q1k chr16 407 75 560477 560809 C 333 98.50 1324 ambiguous_trans_ua 6 ALIGNMENT 285 Y12-13d18.q1k chr07 403 75 401965 402293 C 329 97.57 1324 ambiguous_trans_ua 11 ALIGNMENT 212 Y12-13d18.q1k chr01 75 407 165827 166164 F 333 90.09 1324 ambiguous_trans 21 ALIGNMENT 0 Y12-13d18.q1k chr15 158 62 594760 594759 C 97 0.00 1324 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-13d18.q1k chr02 671 404 226628 226627 C 268 0.00 1324 ambiguous_trans 3 ALIGNMENT 0 Y12-13d18.q1k chr16 671 408 560478 560477 C 264 0.00 1324 ambiguous_trans_ua 6 ALIGNMENT 306 Y12-13d18.q1k chr13 75 403 357004 357332 F 329 99.70 1324 ambiguous_trans 4 ALIGNMENT 57 Y12-13d18.q1k chr07 209 98 817278 817387 C 112 86.61 1324 ambiguous_trans 24 ALIGNMENT 0 Y12-13d18.q1k chr15 671 404 594825 594824 C 268 0.00 1324 ambiguous_trans 15 ALIGNMENT 293 Y12-13d18.q1k chr02 403 75 221043 221373 C 329 98.48 1324 ambiguous_trans 9 ALIGNMENT 809 Y12-13d19.p1k chr02 22 935 484457 485370 F 914 97.70 1334 accept 0 ALIGNMENT 779 Y12-13d19.q1k chr02 854 34 487630 488450 C 821 98.66 1223 accept 0 ALIGNMENT 1027 Y12-13d23.p1k chr07 20 1299 168378 169641 F 1280 95.23 1327 accept 0 ALIGNMENT 890 Y12-13d23.q1k chr07 1099 36 171472 172525 C 1064 96.24 1179 accept 0 ALIGNMENT 1016 Y12-13d24.p1k chr04 1209 20 8490 9684 C 1190 95.63 1281 ambiguous_tel 0 ALIGNMENT 1019 Y12-13d24.p1k chr10 20 1209 736031 737225 F 1190 95.71 1281 ambiguous_tel 1 ALIGNMENT 963 Y12-13d24.q1k chr10 1143 35 739358 740470 C 1109 96.48 1145 ambiguous_tel 1 ALIGNMENT 966 Y12-13d24.q1k chr04 35 1143 5246 6358 F 1109 96.57 1145 ambiguous_tel 0 ALIGNMENT 1034 Y12-13e01.q1k chr13 1152 36 132668 133790 C 1117 98.30 1180 accept 0 ALIGNMENT 979 Y12-13e01.p1k chr13 19 1188 128178 129355 F 1170 95.38 1388 accept 0 ALIGNMENT 961 Y12-13e02.p1k chr12 1165 24 461881 463029 C 1142 95.45 1391 accept 0 ALIGNMENT 958 Y12-13e02.q1k chr12 34 1126 466168 467266 F 1093 96.61 1188 reject_low 1 ALIGNMENT 958 Y12-13e02.q1k chr12 34 1126 457031 458129 F 1093 96.61 1188 accept 0 ALIGNMENT 960 Y12-13e02.p1k chr12 1144 24 452769 453892 C 1121 95.81 1391 reject_low 2 ALIGNMENT 949 Y12-13e03.p1k chr15 1108 24 803152 804255 C 1085 97.42 1391 accept 0 ALIGNMENT 1064 Y12-13e03.q1k chr15 30 1226 800058 801255 F 1197 97.33 1226 accept 0 ALIGNMENT 1042 Y12-13e04.p1k chr04 1243 19 297722 298959 C 1225 96.24 1428 accept 0 ALIGNMENT 830 Y12-13e04.q1k chr04 37 1096 292979 294022 F 1060 94.34 1177 accept 0 ALIGNMENT 272 Y12-13e05.q1k chr07 57 986 745524 746441 F 930 77.85 1277 accept 0 ALIGNMENT 867 Y12-13e06.q1k chr12 1091 27 683957 685014 C 1065 95.40 1310 accept 0 ALIGNMENT 932 Y12-13e06.p1k chr12 20 1082 679384 680455 F 1063 97.18 1395 accept 0 ALIGNMENT 984 Y12-13e07.q1k chr13 1241 35 435781 436975 C 1207 95.53 1270 accept 0 ALIGNMENT 885 Y12-13e07.p1k chr13 15 1036 431113 432154 F 1022 96.77 1347 accept 0 ALIGNMENT 0 Y12-13e08.q1k chr08 181 62 556986 556985 C 120 0.00 1300 reject_low 26 ALIGNMENT 406 Y12-13e08.q1k chr14 1167 106 783299 784333 C 1062 86.44 1300 ambiguous_tel 1 ALIGNMENT 402 Y12-13e08.q1k chr13 1150 294 923575 924428 C 857 87.40 1300 ambiguous_tel 4 ALIGNMENT 23 Y12-13e08.q1k chr12 33 164 11223 11357 F 132 90.91 1300 reject_low 23 ALIGNMENT 0 Y12-13e08.q1k chr08 363 62 562582 562581 C 302 0.00 1300 reject_low 29 ALIGNMENT 0 Y12-13e08.q1k chr09 361 62 439883 439882 C 300 0.00 1300 ambiguous_tel 3 ALIGNMENT 30 Y12-13e08.q1k chr14 338 45 784038 784333 C 294 90.48 1300 reject_low 22 ALIGNMENT 0 Y12-13e08.q1k chr12 312 62 1065148 1065147 C 251 0.00 1300 ambiguous_tel 0 ALIGNMENT 0 Y12-13e08.q1k chr01 906 446 229677 230093 C 461 0.00 1300 reject_low 30 ALIGNMENT 20 Y12-13e08.q1k chr08 432 364 562510 562581 C 69 95.65 1300 reject_low 29 ALIGNMENT 0 Y12-13e08.q1k chr03 857 114 316520 316519 C 744 0.00 1300 reject_low 19 ALIGNMENT 0 Y12-13e08.q1k chr12 369 857 11349 11348 F 489 0.00 1300 reject_low 25 ALIGNMENT 32 Y12-13e08.q1k chr06 61 194 4689 4822 F 134 93.28 1300 reject_low 18 ALIGNMENT 0 Y12-13e08.q1k chr08 283 62 556986 556985 C 222 0.00 1300 reject_low 11 ALIGNMENT 21 Y12-13e08.q1k chr08 130 32 556831 556931 C 99 92.93 1300 reject_low 24 ALIGNMENT 0 Y12-13e08.q1k chr03 258 857 361 360 F 600 0.00 1300 reject_low 17 ALIGNMENT 0 Y12-13e08.q1k chr06 195 857 4822 4821 F 663 0.00 1300 reject_low 18 ALIGNMENT 351 Y12-13e08.q1k chr14 349 1167 6619 7407 F 819 85.96 1300 ambiguous_tel 5 ALIGNMENT 33 Y12-13e08.q1k chr03 28 257 136 361 F 230 90.87 1300 reject_low 17 ALIGNMENT 0 Y12-13e08.q1k chr12 233 857 11357 11356 F 625 0.00 1300 reject_low 21 ALIGNMENT 336 Y12-13e08.q1k chr02 1150 376 812410 813178 C 775 85.81 1300 reject_low 9 ALIGNMENT 0 Y12-13e08.q1k chr14 105 62 784334 784333 C 44 0.00 1300 ambiguous_tel 1 ALIGNMENT 345 Y12-13e08.q1k chr04 1150 334 1524645 1525444 C 817 85.92 1300 ambiguous_tel 8 ALIGNMENT 0 Y12-13e08.q1k chr13 62 374 5538 5537 F 313 0.00 1300 ambiguous_tel 7 ALIGNMENT 0 Y12-13e08.q1k chr04 333 62 1525445 1525444 C 272 0.00 1300 ambiguous_tel 8 ALIGNMENT 20 Y12-13e08.q1k chr13 313 196 924304 924426 C 118 92.37 1300 reject_low 27 ALIGNMENT 26 Y12-13e08.q1k chr12 218 368 11196 11349 F 151 92.05 1300 reject_low 25 ALIGNMENT 0 Y12-13e08.q1k chr08 857 342 556832 556831 C 516 0.00 1300 reject_low 26 ALIGNMENT 362 Y12-13e08.q1k chr03 1150 332 315816 316614 C 819 86.45 1300 ambiguous_tel 6 ALIGNMENT 200 Y12-13e08.q1k chr06 303 1133 4689 5477 F 831 81.47 1300 reject_low 16 ALIGNMENT 0 Y12-13e08.q1k chr07 62 396 2 1 F 335 0.00 1300 reject_low 12 ALIGNMENT 0 Y12-13e08.q1k chr14 857 339 784039 784038 C 519 0.00 1300 reject_low 22 ALIGNMENT 0 Y12-13e08.q1k chr08 857 433 562511 562510 C 425 0.00 1300 reject_low 29 ALIGNMENT 0 Y12-13e08.q1k chr01 331 62 230205 230204 C 270 0.00 1300 reject_low 30 ALIGNMENT 0 Y12-13e08.q1k chr13 293 62 924429 924428 C 232 0.00 1300 ambiguous_tel 4 ALIGNMENT 0 Y12-13e08.q1k chr13 195 62 924427 924426 C 134 0.00 1300 reject_low 27 ALIGNMENT 299 Y12-13e08.q1k chr08 1150 284 556142 556985 C 867 84.31 1300 reject_low 11 ALIGNMENT 0 Y12-13e08.q1k chr11 857 208 666251 666250 C 650 0.00 1300 reject_low 20 ALIGNMENT 0 Y12-13e08.q1k chr03 331 62 316615 316614 C 270 0.00 1300 ambiguous_tel 6 ALIGNMENT 28 Y12-13e08.q1k chr11 207 33 666250 666430 C 175 90.86 1300 reject_low 20 ALIGNMENT 0 Y12-13e08.q1k chr02 375 62 813179 813178 C 314 0.00 1300 reject_low 9 ALIGNMENT 26 Y12-13e08.q1k chr03 113 30 316519 316601 C 84 94.05 1300 reject_low 19 ALIGNMENT 29 Y12-13e08.q1k chr12 68 232 11192 11357 F 165 91.52 1300 reject_low 21 ALIGNMENT 308 Y12-13e08.q1k chr07 397 1121 2 717 F 725 85.10 1300 reject_low 12 ALIGNMENT 260 Y12-13e08.q1k chr11 1150 223 665579 666454 C 928 83.19 1300 reject_low 14 ALIGNMENT 0 Y12-13e08.q1k chr08 857 131 556832 556831 C 727 0.00 1300 reject_low 24 ALIGNMENT 342 Y12-13e08.q1k chr13 375 1167 5538 6323 F 793 85.75 1300 ambiguous_tel 7 ALIGNMENT 29 Y12-13e08.q1k chr01 445 332 230094 230204 C 114 92.11 1300 reject_low 30 ALIGNMENT 21 Y12-13e08.q1k chr08 341 182 556831 556985 C 160 91.88 1300 reject_low 26 ALIGNMENT 283 Y12-13e08.q1k chr10 635 1150 7225 7730 F 516 87.98 1300 reject_low 15 ALIGNMENT 0 Y12-13e08.q1k chr12 62 255 11196 11195 F 194 0.00 1300 reject_low 10 ALIGNMENT 0 Y12-13e08.q1k chr14 62 348 6619 6618 F 287 0.00 1300 ambiguous_tel 5 ALIGNMENT 0 Y12-13e08.q1k chr08 857 361 562457 562456 C 497 0.00 1300 reject_low 28 ALIGNMENT 0 Y12-13e08.q1k chr10 62 634 7225 7224 F 573 0.00 1300 reject_low 15 ALIGNMENT 308 Y12-13e08.q1k chr12 256 1087 11196 11989 F 832 85.58 1300 reject_low 10 ALIGNMENT 0 Y12-13e08.q1k chr13 857 314 924305 924304 C 544 0.00 1300 reject_low 27 ALIGNMENT 0 Y12-13e08.q1k chr11 62 366 2 1 F 305 0.00 1300 reject_low 13 ALIGNMENT 43 Y12-13e08.q1k chr01 999 907 229585 229676 C 93 83.87 1300 reject_low 30 ALIGNMENT 0 Y12-13e08.q1k chr12 62 217 11196 11195 F 156 0.00 1300 reject_low 25 ALIGNMENT 0 Y12-13e08.q1k chr08 169 62 562644 562643 C 108 0.00 1300 reject_low 28 ALIGNMENT 469 Y12-13e08.q1k chr12 1169 313 1064297 1065147 C 857 89.26 1300 ambiguous_tel 0 ALIGNMENT 0 Y12-13e08.q1k chr12 165 857 11357 11356 F 693 0.00 1300 reject_low 23 ALIGNMENT 411 Y12-13e08.q1k chr09 1155 362 439096 439882 C 794 88.04 1300 ambiguous_tel 3 ALIGNMENT 20 Y12-13e08.q1k chr08 360 170 562456 562643 C 191 90.05 1300 reject_low 28 ALIGNMENT 0 Y12-13e08.q1k chr11 222 62 666455 666454 C 161 0.00 1300 reject_low 14 ALIGNMENT 309 Y12-13e08.q1k chr11 367 1045 2 672 F 679 86.16 1300 reject_low 13 ALIGNMENT 0 Y12-13e08.q1k chr06 62 302 4689 4688 F 241 0.00 1300 reject_low 16 ALIGNMENT 385 Y12-13e08.q1k chr03 53 1169 2 1079 F 1117 85.77 1300 ambiguous_tel 2 ALIGNMENT 444 Y12-13e09.p1k chr12 656 98 451419 451991 C 559 94.63 1452 reject_low 2 ALIGNMENT 161 Y12-13e09.p1k chr12 308 98 489754 489959 C 211 94.31 1452 reject_low 3 ALIGNMENT 721 Y12-13e09.p1k chr12 1177 98 460012 461128 C 1080 90.83 1452 accept 0 ALIGNMENT 0 Y12-13e09.p1k chr12 878 657 451420 451419 C 222 0.00 1452 reject_low 2 ALIGNMENT 0 Y12-13e09.p1k chr12 878 309 489755 489754 C 570 0.00 1452 reject_low 3 ALIGNMENT 1034 Y12-13e09.q1k chr12 36 1243 456843 458064 F 1208 95.94 1267 accept 0 ALIGNMENT 1034 Y12-13e09.q1k chr12 36 1243 465980 467201 F 1208 95.94 1267 reject_low 1 ALIGNMENT 828 Y12-13e10.p1k chr12 1041 16 853326 854342 C 1026 95.42 1445 accept 0 ALIGNMENT 531 Y12-13e10.q1k chr12 29 623 851524 852115 F 595 97.48 1421 accept 0 ALIGNMENT 767 Y12-13e11.q1k chr12 890 34 454657 455506 C 857 97.55 1253 reject_low 1 ALIGNMENT 767 Y12-13e11.q1k chr12 890 34 463794 464643 C 857 97.55 1253 accept 0 ALIGNMENT 0 Y12-13e11.p1k chr12 62 496 489754 489753 F 435 0.00 1413 reject_low 2 ALIGNMENT 0 Y12-13e11.p1k chr12 62 148 451419 451418 F 87 0.00 1413 reject_low 1 ALIGNMENT 854 Y12-13e11.p1k chr12 149 1196 451419 452493 F 1048 94.85 1413 reject_low 1 ALIGNMENT 965 Y12-13e11.p1k chr12 19 1196 460422 461630 F 1178 95.08 1413 accept 0 ALIGNMENT 557 Y12-13e11.p1k chr12 497 1180 489754 490443 F 684 94.59 1413 reject_low 2 ALIGNMENT 24 Y12-13e12.q1k chr16 942 984 581365 581409 F 43 88.37 1241 reject_bad_break 1 ALIGNMENT 0 Y12-13e12.q1k chr16 939 941 581352 581364 F 3 0.00 1241 reject_bad_break 1 ALIGNMENT 1018 Y12-13e12.p1k chr02 1162 24 360259 361413 C 1139 97.72 1418 accept_chi 0 ALIGNMENT 835 Y12-13e12.q1k chr16 39 938 580451 581351 F 900 98.33 1241 reject_bad_break 1 ALIGNMENT 965 Y12-13e13.p1k chr04 1189 14 111495 112672 C 1176 94.90 1447 accept 0 ALIGNMENT 882 Y12-13e13.q1k chr04 35 1098 106781 107824 F 1064 95.96 1313 accept 0 ALIGNMENT 718 Y12-13e14.q1k chr10 5 982 218995 219975 F 978 92.33 1164 accept 0 ALIGNMENT 657 Y12-13e14.p1k chr10 941 31 222517 223424 C 911 92.21 1465 accept 0 ALIGNMENT 996 Y12-13e15.p1k chr10 19 1217 642446 643642 F 1199 96.00 1387 accept 0 ALIGNMENT 850 Y12-13e15.q1k chr10 999 30 647166 648131 C 970 96.70 1231 accept 0 ALIGNMENT 949 Y12-13e16.p1k chr10 1146 20 222295 223435 C 1127 96.72 1362 accept 0 ALIGNMENT 940 Y12-13e16.q1k chr10 36 1229 218938 220143 F 1194 94.05 1236 accept 0 ALIGNMENT 344 Y12-13e17.q1k chr07 903 39 1005210 1006074 C 865 80.00 1239 reject_low 1 ALIGNMENT 937 Y12-13e17.p1k chr08 23 1206 467985 469184 F 1184 94.26 1408 accept 0 ALIGNMENT 1038 Y12-13e17.q1k chr08 1193 36 471227 472398 C 1158 96.72 1239 accept 0 ALIGNMENT 745 Y12-13e18.q1k chr05 910 28 197940 198831 C 883 96.60 1250 accept 0 ALIGNMENT 993 Y12-13e18.p1k chr05 15 1229 193879 195084 F 1215 95.06 1451 accept 0 ALIGNMENT 937 Y12-13e19.p1k chr07 1104 21 123381 124473 C 1084 95.94 1372 accept 0 ALIGNMENT 979 Y12-13e19.q1k chr07 34 1085 119341 120392 F 1052 98.29 1247 accept 0 ALIGNMENT 1005 Y12-13e20.p1k chr12 1191 21 454497 455685 C 1171 96.33 1371 accept 0 ALIGNMENT 0 Y12-13e20.q1k chr12 62 349 489754 489753 F 288 0.00 1299 reject_low 2 ALIGNMENT 977 Y12-13e20.q1k chr12 31 1266 460585 461825 F 1236 94.09 1299 accept 1 ALIGNMENT 669 Y12-13e20.q1k chr12 350 1150 489754 490543 F 801 95.51 1299 reject_low 2 ALIGNMENT 1005 Y12-13e20.p1k chr12 1191 21 463634 464822 C 1171 96.33 1371 accept 1 ALIGNMENT 977 Y12-13e20.q1k chr12 31 1266 451448 452688 F 1236 94.09 1299 accept 0 ALIGNMENT 1041 Y12-13e21.q1k chr02 1153 35 393567 394687 C 1119 98.39 1154 accept 0 ALIGNMENT 986 Y12-13e21.p1k chr02 27 1320 390308 391600 F 1294 94.36 1361 accept 0 ALIGNMENT 0 Y12-13e22.p1k chr02 830 62 605488 605487 C 769 0.00 1328 reject_low 1 ALIGNMENT 988 Y12-13e22.q1k chr16 34 1161 402273 403397 F 1128 96.72 1161 accept 0 ALIGNMENT 163 Y12-13e22.p1k chr02 1209 831 605105 605487 C 379 82.85 1328 reject_low 1 ALIGNMENT 997 Y12-13e22.p1k chr16 1246 24 405597 406828 C 1223 95.26 1328 accept 0 ALIGNMENT 1025 Y12-13e23.p1k chr11 1199 16 261189 262368 C 1184 96.45 1322 accept 0 ALIGNMENT 964 Y12-13e24.p1k chr02 1121 21 627857 628972 C 1101 97.00 1282 accept 0 ALIGNMENT 303 Y12-13e24.q1k chr02 256 661 625992 626395 F 406 92.61 1109 accept 0 ALIGNMENT 1059 Y12-13f01.p1k chr10 24 1247 429743 430980 F 1224 96.41 1424 accept 0 ALIGNMENT 1051 Y12-13f01.q1k chr10 1167 42 433112 434240 C 1126 98.67 1174 accept 0 ALIGNMENT 954 Y12-13f02.p1k chr12 21 1260 665052 666334 F 1240 93.47 1445 accept 0 ALIGNMENT 1023 Y12-13f02.q1k chr12 1192 36 668046 669208 C 1157 97.84 1199 accept 0 ALIGNMENT 984 Y12-13f03.q1k chr12 36 1184 1009295 1010451 F 1149 96.17 1197 accept 0 ALIGNMENT 1008 Y12-13f03.p1k chr12 1227 18 1013742 1014967 C 1210 95.04 1420 accept 0 ALIGNMENT 613 Y12-13f04.q1k chr04 33 708 586485 587160 F 676 98.52 1332 accept 0 ALIGNMENT 0 Y12-13f04.q1k chr08 62 88 420592 420591 F 27 0.00 1332 reject_low 1 ALIGNMENT 0 Y12-13f04.q1k chr08 119 669 420621 420620 F 551 0.00 1332 reject_low 1 ALIGNMENT 680 Y12-13f04.p1k chr04 934 22 591282 592197 C 913 92.00 1415 accept 0 ALIGNMENT 22 Y12-13f04.q1k chr08 89 118 420592 420621 F 30 96.67 1332 reject_low 1 ALIGNMENT 750 Y12-13f06.q1k chr16 25 873 760957 761803 F 849 97.29 1337 accept 0 ALIGNMENT 932 Y12-13f06.p1k chr16 1090 22 764635 765716 C 1069 96.91 1419 accept 0 ALIGNMENT 953 Y12-13f07.p1k chr02 20 1134 774032 775143 F 1115 96.50 1437 accept 0 ALIGNMENT 814 Y12-13f07.q1k chr02 983 35 778573 779510 C 949 96.84 1316 accept 0 ALIGNMENT 725 Y12-13f09.p1k chr06 16 961 164287 165224 F 946 93.55 1425 accept 0 ALIGNMENT 566 Y12-13f09.q1k chr06 643 30 168698 169311 C 614 98.70 1292 accept 0 ALIGNMENT 850 Y12-13f10.q1k chr10 961 35 497435 498361 C 927 98.06 1326 accept 0 ALIGNMENT 955 Y12-13f10.p1k chr10 21 1069 492829 493878 F 1049 98.00 1439 accept 0 ALIGNMENT 810 Y12-13f11.q1k chr04 34 1180 531805 532958 F 1147 90.85 1249 reject_low 1 ALIGNMENT 994 Y12-13f11.p1k chr04 1123 17 539050 540165 C 1107 97.20 1387 accept 0 ALIGNMENT 807 Y12-13f11.q1k chr04 34 1180 535690 536843 F 1147 90.76 1249 reject_low 2 ALIGNMENT 813 Y12-13f11.q1k chr04 34 1180 527920 529073 F 1147 90.93 1249 accept 0 ALIGNMENT 913 Y12-13f12.p1k chr01 13 1045 113889 114923 F 1033 96.61 1418 accept 0 ALIGNMENT 464 Y12-13f12.q1k chr01 578 31 117889 118437 C 548 97.08 1388 accept 0 ALIGNMENT 256 Y12-13f13.p1k chr08 194 808 199780 200387 F 615 81.95 1352 accept 0 ALIGNMENT 217 Y12-13f13.q1k chr08 634 123 203109 203620 C 512 81.64 1347 accept 0 ALIGNMENT 807 Y12-13f14.p1k chr12 891 17 302214 303086 C 875 98.17 1433 accept_chi 0 ALIGNMENT 778 Y12-13f14.q1k chr14 40 903 431293 432150 F 864 97.92 1324 accept_chi 1 ALIGNMENT 920 Y12-13f15.q1k chr15 35 1123 39333 40416 F 1089 96.24 1219 accept 0 ALIGNMENT 0 Y12-13f15.p1k chr07 315 62 424210 424209 C 254 0.00 1389 reject_low 1 ALIGNMENT 30 Y12-13f15.p1k chr07 406 316 424119 424209 C 91 78.02 1389 reject_low 1 ALIGNMENT 21 Y12-13f15.p1k chr07 537 499 423988 424026 C 39 84.62 1389 reject_low 1 ALIGNMENT 0 Y12-13f15.p1k chr07 498 407 424027 424118 C 92 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-13f15.p1k chr07 823 538 423989 423988 C 286 0.00 1389 reject_low 1 ALIGNMENT 758 Y12-13f15.p1k chr15 1069 18 43178 44219 C 1052 92.21 1389 accept 0 ALIGNMENT 934 Y12-13f16.p1k chr15 19 1065 321757 322809 F 1047 97.42 1367 accept 0 ALIGNMENT 850 Y12-13f16.q1k chr15 1030 36 324904 325901 C 995 96.68 1229 accept 0 ALIGNMENT 0 Y12-13f17.p1k chr16 278 62 931827 931826 C 217 0.00 1455 ambiguous_tel 1 ALIGNMENT 48 Y12-13f17.p1k chr06 712 596 28253 28369 C 117 80.34 1455 ambiguous_tel 2 ALIGNMENT 116 Y12-13f17.p1k chr16 736 279 931369 931826 C 458 75.55 1455 ambiguous_tel 1 ALIGNMENT 0 Y12-13f17.p1k chr06 742 713 28254 28253 C 30 0.00 1455 ambiguous_tel 2 ALIGNMENT 0 Y12-13f17.p1k chr06 595 507 28370 28443 C 89 0.00 1455 ambiguous_tel 2 ALIGNMENT 85 Y12-13f17.p1k chr06 506 36 28444 28914 C 471 73.04 1455 ambiguous_tel 2 ALIGNMENT 206 Y12-13f17.q1k chr16 123 622 931600 932099 F 500 81.20 1323 accept 0 ALIGNMENT 0 Y12-13f17.q1k chr16 62 122 931600 931599 F 61 0.00 1323 accept 0 ALIGNMENT 517 Y12-13f18.q1k chr12 658 34 467411 468030 C 625 95.68 1290 accept 1 ALIGNMENT 916 Y12-13f18.p1k chr12 20 1033 454312 455338 F 1014 97.63 1337 accept 0 ALIGNMENT 517 Y12-13f18.q1k chr12 658 34 458274 458893 C 625 95.68 1290 accept 0 ALIGNMENT 916 Y12-13f18.p1k chr12 20 1033 463449 464475 F 1014 97.63 1337 accept 1 ALIGNMENT 20 Y12-13f19.q1k chr08 1199 1153 417873 417918 C 47 85.11 1258 reject_bad_break 0 ALIGNMENT 0 Y12-13f19.q1k chr08 1152 1140 417919 417923 C 13 0.00 1258 reject_bad_break 0 ALIGNMENT 1002 Y12-13f19.q1k chr08 1139 39 417924 419025 C 1101 97.82 1258 reject_bad_break 0 ALIGNMENT 841 Y12-13f19.p1k chr08 19 1123 413437 414546 F 1105 95.02 1318 reject_bad_break 0 ALIGNMENT 1012 Y12-13f20.p1k chr13 18 1186 662987 664173 F 1169 96.75 1388 accept 0 ALIGNMENT 921 Y12-13f20.q1k chr13 1189 36 668003 669143 C 1154 94.54 1288 accept 0 ALIGNMENT 981 Y12-13f22.p1k chr04 17 1228 1473271 1474498 F 1212 95.96 1340 accept 0 ALIGNMENT 996 Y12-13f22.q1k chr04 1174 36 1476070 1477207 C 1139 96.05 1174 accept 0 ALIGNMENT 975 Y12-13f23.p1k chr14 1184 21 702239 703420 C 1164 95.36 1292 accept 0 ALIGNMENT 932 Y12-13f23.q1k chr14 28 1086 699206 700274 F 1059 96.51 1220 accept 0 ALIGNMENT 1011 Y12-13f24.p1k chr03 1268 19 245911 247147 C 1250 95.12 1328 accept 0 ALIGNMENT 1077 Y12-13f24.q1k chr03 32 1222 242385 243578 F 1191 97.57 1281 accept 0 ALIGNMENT 927 Y12-13g02.p1k chr02 20 1088 652270 653353 F 1069 96.54 1363 accept 0 ALIGNMENT 898 Y12-13g02.q1k chr02 1016 35 657310 658294 C 982 98.27 1176 accept 0 ALIGNMENT 931 Y12-13g03.p1k chr06 30 1074 131199 132252 F 1045 97.32 1345 accept 0 ALIGNMENT 1030 Y12-13g04.p1k chr05 1201 26 203424 204620 C 1176 96.43 1361 accept 0 ALIGNMENT 943 Y12-13g05.p1k chr13 1138 16 469634 470755 C 1123 95.73 1417 accept 0 ALIGNMENT 694 Y12-13g05.q1k chr13 33 821 465306 466091 F 789 97.21 1315 accept 0 ALIGNMENT 965 Y12-13g06.p1k chr16 18 1184 10185 11376 F 1167 94.77 1404 ambiguous_tel 1 ALIGNMENT 799 Y12-13g06.q1k chr16 1064 30 13987 15031 C 1035 93.53 1247 ambiguous_tel 1 ALIGNMENT 810 Y12-13g06.q1k chr15 30 1064 1076105 1077148 F 1035 93.82 1247 ambiguous_tel 0 ALIGNMENT 965 Y12-13g06.p1k chr15 1184 18 1079766 1080957 C 1167 94.77 1404 ambiguous_tel 0 ALIGNMENT 1031 Y12-13g06.p1k chr13 1184 18 919589 920771 C 1167 96.57 1404 reject_low 2 ALIGNMENT 1013 Y12-13g08.q1k chr14 1207 40 457535 458717 C 1168 97.26 1266 accept 0 ALIGNMENT 909 Y12-13g08.p1k chr14 19 1140 454180 455320 F 1122 95.81 1418 accept 0 ALIGNMENT 504 Y12-13g09.q1k chr04 720 32 1278882 1279545 C 689 93.03 1470 accept 0 ALIGNMENT 693 Y12-13g09.p1k chr04 15 821 1273501 1274307 F 807 96.65 1469 accept 0 ALIGNMENT 0 Y12-13g10.p1k chr12 898 62 490544 490543 C 837 0.00 1384 reject_low 3 ALIGNMENT 989 Y12-13g10.p1k chr12 1154 21 452301 453457 C 1134 96.56 1384 reject_low 2 ALIGNMENT 132 Y12-13g10.p1k chr12 1159 899 490263 490543 C 261 86.21 1384 reject_low 3 ALIGNMENT 976 Y12-13g10.q1k chr12 34 1197 458055 459220 F 1164 96.22 1272 accept 0 ALIGNMENT 976 Y12-13g10.q1k chr12 34 1197 467192 468357 F 1164 96.22 1272 reject_low 1 ALIGNMENT 990 Y12-13g10.p1k chr12 1159 21 461432 462594 C 1139 96.49 1384 accept 0 ALIGNMENT 447 Y12-13g11.q1k chr15 575 39 883796 884331 C 537 95.72 1357 accept 0 ALIGNMENT 901 Y12-13g11.p1k chr15 17 1004 879650 880638 F 988 97.77 1464 accept 0 ALIGNMENT 759 Y12-13g12.p1k chr08 902 18 64259 65140 C 885 96.72 1436 accept 0 ALIGNMENT 763 Y12-13g12.q1k chr08 26 964 60440 61378 F 939 95.53 1246 accept 0 ALIGNMENT 1020 Y12-13g13.q1k chr10 1222 36 615174 616376 C 1187 96.63 1222 accept 0 ALIGNMENT 1025 Y12-13g13.p1k chr10 17 1208 611025 612229 F 1192 96.39 1405 accept 0 ALIGNMENT 369 Y12-13g14.p1k chr04 450 22 491893 492321 C 429 95.57 1443 reject_low 1 ALIGNMENT 964 Y12-13g14.q1k chr02 33 1237 329164 330353 F 1205 95.35 1265 accept 0 ALIGNMENT 0 Y12-13g14.p1k chr04 679 451 491894 491893 C 229 0.00 1443 reject_low 1 ALIGNMENT 709 Y12-13g14.p1k chr02 878 15 332956 333819 C 864 95.14 1443 accept 0 ALIGNMENT 536 Y12-13g15.q1k chr07 650 33 848246 848864 C 618 96.60 1327 accept 0 ALIGNMENT 999 Y12-13g15.p1k chr07 19 1138 843308 844447 F 1120 97.50 1365 accept 0 ALIGNMENT 858 Y12-13g16.p1k chr11 15 1110 190332 191438 F 1096 94.98 1379 accept_chi 0 ALIGNMENT 683 Y12-13g16.q1k chr07 746 32 1056360 1057074 C 715 99.16 1324 accept_chi 1 ALIGNMENT 678 Y12-13g17.q1k chr03 29 762 163858 164588 F 734 98.37 1248 accept 0 ALIGNMENT 1021 Y12-13g17.p1k chr03 1255 26 165581 166819 C 1230 95.53 1405 accept 0 ALIGNMENT 564 Y12-13g18.q1k chr12 30 657 810661 811288 F 628 97.29 1329 accept 0 ALIGNMENT 344 Y12-13g18.p1k chr07 893 22 552582 553447 C 872 81.08 1594 reject_low 1 ALIGNMENT 188 Y12-13g18.q1k chr07 30 600 548989 549559 F 571 78.28 1329 reject_low 1 ALIGNMENT 798 Y12-13g18.p1k chr12 904 14 814244 815128 C 891 97.87 1594 accept 0 ALIGNMENT 405 Y12-13g19.q1k chr10 541 38 228639 229144 C 504 96.23 1257 accept 0 ALIGNMENT 757 Y12-13g19.p1k chr10 19 861 225191 226036 F 843 97.86 1424 accept 0 ALIGNMENT 1005 Y12-13g20.q1k chr14 34 1178 707387 708530 F 1145 96.68 1233 accept 0 ALIGNMENT 746 Y12-13g20.p1k chr14 879 13 710506 711377 C 867 96.89 1393 accept 0 ALIGNMENT 957 Y12-13g21.q1k chr14 1148 30 238371 239496 C 1119 96.43 1150 accept 0 ALIGNMENT 970 Y12-13g21.p1k chr14 18 1116 233935 235050 F 1099 97.27 1302 accept 0 ALIGNMENT 575 Y12-13g22.q1k chr12 233 933 451419 452135 F 701 95.01 1303 reject_low 1 ALIGNMENT 0 Y12-13g22.q1k chr12 62 232 451419 451418 F 171 0.00 1303 reject_low 1 ALIGNMENT 715 Y12-13g22.q1k chr12 38 933 460355 461272 F 896 94.42 1303 accept 0 ALIGNMENT 998 Y12-13g22.p1k chr12 1286 21 463903 465192 C 1266 94.31 1345 accept 0 ALIGNMENT 0 Y12-13g22.q1k chr12 62 580 489754 489753 F 519 0.00 1303 reject_low 2 ALIGNMENT 998 Y12-13g22.p1k chr12 1286 21 454766 456055 C 1266 94.31 1345 reject_low 1 ALIGNMENT 286 Y12-13g22.q1k chr12 581 933 489754 490103 F 353 94.62 1303 reject_low 2 ALIGNMENT 998 Y12-13g23.p1k chr10 1215 22 678274 679472 C 1194 95.64 1314 accept 0 ALIGNMENT 939 Y12-13h01.q1k chr13 1075 30 278503 279539 C 1046 97.51 1187 accept 0 ALIGNMENT 0 Y12-13h01.q1k chr13 885 851 281629 281628 C 35 0.00 1187 reject_low 1 ALIGNMENT 1026 Y12-13h01.p1k chr13 25 1169 275234 276383 F 1145 97.73 1395 accept 0 ALIGNMENT 225 Y12-13h01.q1k chr13 850 50 281628 282428 C 801 76.78 1187 reject_low 1 ALIGNMENT 508 Y12-13h02.q1k chr11 576 28 371433 371980 C 549 98.18 1294 accept 0 ALIGNMENT 902 Y12-13h02.p1k chr11 21 1050 365610 366651 F 1030 96.60 1307 accept 0 ALIGNMENT 187 Y12-13h03.q1k chr12 48 452 1009294 1009690 F 405 83.46 1653 accept 0 ALIGNMENT 922 Y12-13h04.p1k chr10 22 1083 239944 241017 F 1062 96.61 1361 accept 0 ALIGNMENT 726 Y12-13h05.q1k chr16 825 33 426682 427473 C 793 98.74 1293 accept 0 ALIGNMENT 810 Y12-13h05.p1k chr16 17 936 423132 424048 F 920 97.07 1598 accept 0 ALIGNMENT 636 Y12-13h06.p1k chr12 341 1080 489754 490497 F 740 95.68 1397 reject_low 2 ALIGNMENT 898 Y12-13h06.q1k chr12 1034 38 454487 455471 C 997 97.99 1315 accept 0 ALIGNMENT 901 Y12-13h06.p1k chr12 23 1133 460586 461725 F 1111 94.60 1397 accept 1 ALIGNMENT 901 Y12-13h06.p1k chr12 23 1133 451449 452588 F 1111 94.60 1397 accept 0 ALIGNMENT 898 Y12-13h06.q1k chr12 1034 38 463624 464608 C 997 97.99 1315 accept 1 ALIGNMENT 0 Y12-13h06.p1k chr12 62 340 489754 489753 F 279 0.00 1397 reject_low 2 ALIGNMENT 775 Y12-13h07.p1k chr04 114 1264 19769 20929 F 1151 91.14 1503 accept 0 ALIGNMENT 779 Y12-13h07.q1k chr04 957 31 22895 23815 C 927 96.01 1287 accept 0 ALIGNMENT 529 Y12-13h08.q1k chr10 659 27 309229 309864 C 633 96.37 1408 accept 0 ALIGNMENT 834 Y12-13h08.p1k chr10 16 1005 305468 306452 F 990 96.06 1532 accept 0 ALIGNMENT 333 Y12-13h09.p1k chr09 22 358 322952 323288 F 337 100.00 394 accept_chi 1 ALIGNMENT 0 Y12-13h09.p1k vc_4 353 62 5853 5852 C 292 0.00 394 reject_low 4 ALIGNMENT 0 Y12-13h09.p1k chr09 359 394 323288 323287 F 36 0.00 394 accept_chi 1 ALIGNMENT 38 Y12-13h09.p1k vc_4 394 354 5812 5852 C 41 97.56 394 reject_low 4 ALIGNMENT 38 Y12-13h09.p1k vc_3 354 394 2491 2531 F 41 97.56 394 reject_low 3 ALIGNMENT 0 Y12-13h09.p1k vc_3 62 353 2491 2490 F 292 0.00 394 reject_low 3 ALIGNMENT 0 Y12-13h09.p1k vc_1 62 353 2491 2490 F 292 0.00 394 reject_low 2 ALIGNMENT 334 Y12-13h09.q1k chr09 370 33 322949 323286 C 338 100.00 371 accept_chi 0 ALIGNMENT 38 Y12-13h09.p1k vc_1 354 394 2491 2531 F 41 97.56 394 reject_low 2 ALIGNMENT 1023 Y12-13h10.p1k chr12 19 1170 620226 621394 F 1152 97.40 1413 accept 0 ALIGNMENT 449 Y12-13h10.q1k chr12 509 29 623891 624371 C 481 98.75 1370 accept 0 ALIGNMENT 959 Y12-13h11.p1k chr02 24 1179 469466 470634 F 1156 95.50 1439 accept 0 ALIGNMENT 643 Y12-13h11.q1k chr02 784 34 471775 472526 C 751 96.14 1305 accept 0 ALIGNMENT 867 Y12-13h12.p1k chr03 1081 24 143303 144389 C 1058 96.41 1333 accept 0 ALIGNMENT 976 Y12-13h12.q1k chr03 36 1194 139967 141145 F 1159 96.46 1230 accept 0 ALIGNMENT 956 Y12-13h13.p1k chr14 44 1167 694969 696111 F 1124 95.73 1370 accept 0 ALIGNMENT 1031 Y12-13h13.q1k chr14 1170 37 699911 701049 C 1134 97.35 1228 accept 0 ALIGNMENT 665 Y12-13h14.q1k chr15 31 788 715999 716754 F 758 96.83 1220 accept 0 ALIGNMENT 677 Y12-13h15.p1k chr16 16 832 928670 929482 F 817 96.21 1425 accept 0 ALIGNMENT 559 Y12-13h15.q1k chr16 656 34 932448 933069 C 623 97.75 1408 accept 0 ALIGNMENT 218 Y12-13h15.q1k chr02 609 319 801633 801923 C 291 92.10 1408 reject_low 1 ALIGNMENT 0 Y12-13h15.q1k chr02 318 62 801924 801923 C 257 0.00 1408 reject_low 1 ALIGNMENT 665 Y12-13h16.q1k chr02 30 745 115966 116681 F 716 98.18 1265 accept 0 ALIGNMENT 730 Y12-13h16.p1k chr02 862 15 120313 121153 C 848 97.29 1518 accept 0 ALIGNMENT 0 Y12-13h17.q1k chr11 84 718 381320 381319 F 635 0.00 1263 reject_low 3 ALIGNMENT 25 Y12-13h17.q1k chr14 81 40 70028 70070 C 42 92.86 1263 reject_low 2 ALIGNMENT 20 Y12-13h17.q1k chr10 86 58 403978 404006 C 29 96.55 1263 reject_low 5 ALIGNMENT 0 Y12-13h17.q1k chr06 718 84 160567 160566 C 635 0.00 1263 reject_low 6 ALIGNMENT 673 Y12-13h17.q1k chr12 736 47 510866 511555 C 690 99.57 1263 accept 0 ALIGNMENT 0 Y12-13h17.q1k chr12 718 84 556340 556339 C 635 0.00 1263 reject_low 4 ALIGNMENT 0 Y12-13h17.q1k chr10 718 87 403979 403978 C 632 0.00 1263 reject_low 5 ALIGNMENT 20 Y12-13h17.q1k chr06 83 55 160566 160594 C 29 96.55 1263 reject_low 6 ALIGNMENT 768 Y12-13h17.p1k chr12 17 845 506393 507224 F 829 98.31 1376 accept 0 ALIGNMENT 20 Y12-13h17.q1k chr11 81 57 566744 566768 C 25 100.00 1263 reject_low 10 ALIGNMENT 88 Y12-13h17.q1k chr12 1092 741 1059119 1059468 C 352 78.41 1263 reject_low 1 ALIGNMENT 0 Y12-13h17.q1k chr07 718 79 988901 988900 C 640 0.00 1263 reject_low 8 ALIGNMENT 20 Y12-13h17.q1k chr07 78 54 988900 988924 C 25 100.00 1263 reject_low 8 ALIGNMENT 0 Y12-13h17.q1k chr13 718 80 514629 514628 C 639 0.00 1263 reject_low 9 ALIGNMENT 0 Y12-13h17.q1k chr07 718 82 379167 379166 C 637 0.00 1263 reject_low 7 ALIGNMENT 20 Y12-13h17.q1k chr11 46 83 381283 381320 F 38 92.11 1263 reject_low 3 ALIGNMENT 0 Y12-13h17.q1k chr14 718 82 70029 70028 C 637 0.00 1263 reject_low 2 ALIGNMENT 0 Y12-13h17.q1k chr12 740 62 1059469 1059468 C 679 0.00 1263 reject_low 1 ALIGNMENT 0 Y12-13h17.q1k chr11 718 82 566745 566744 C 637 0.00 1263 reject_low 10 ALIGNMENT 20 Y12-13h17.q1k chr12 83 46 556339 556376 C 38 92.11 1263 reject_low 4 ALIGNMENT 21 Y12-13h17.q1k chr07 81 56 379166 379191 C 26 100.00 1263 reject_low 7 ALIGNMENT 20 Y12-13h17.q1k chr13 79 55 514628 514652 C 25 100.00 1263 reject_low 9 ALIGNMENT 0 Y12-13h18.q1k chr14 366 524 140104 140259 F 159 0.00 1430 reject_low 1 ALIGNMENT 49 Y12-13h18.q1k chr14 525 651 140260 140386 F 127 81.10 1430 reject_low 1 ALIGNMENT 26 Y12-13h18.q1k chr14 40 75 139778 139813 F 36 91.67 1430 reject_low 1 ALIGNMENT 24 Y12-13h18.q1k chr14 268 365 140006 140103 F 98 75.51 1430 reject_low 1 ALIGNMENT 811 Y12-13h18.p1k chr05 16 908 28168 29059 F 893 98.10 1429 accept 0 ALIGNMENT 631 Y12-13h18.q1k chr05 735 31 31610 32314 C 705 97.30 1430 accept 0 ALIGNMENT 0 Y12-13h18.q1k chr14 76 267 139814 140005 F 192 0.00 1430 reject_low 1 ALIGNMENT 985 Y12-13h19.q1k chr12 1176 33 1059010 1060165 C 1144 96.68 1221 accept 0 ALIGNMENT 612 Y12-13h19.q1k chr03 906 33 303898 304768 C 874 91.19 1221 reject_low 1 ALIGNMENT 867 Y12-13h19.p1k chr12 20 992 1053750 1054736 F 973 98.36 1295 accept 0 ALIGNMENT 0 Y12-13h19.q1k chr09 62 581 10305 10304 F 520 0.00 1221 reject_low 2 ALIGNMENT 0 Y12-13h19.q1k chr10 62 581 10288 10287 F 520 0.00 1221 reject_low 3 ALIGNMENT 197 Y12-13h19.q1k chr09 582 906 10305 10628 F 325 87.69 1221 reject_low 2 ALIGNMENT 197 Y12-13h19.q1k chr10 582 906 10288 10611 F 325 87.69 1221 reject_low 3 ALIGNMENT 1058 Y12-13h20.q1k chr03 1208 35 216786 217962 C 1174 97.44 1222 accept 0 ALIGNMENT 1038 Y12-13h20.p1k chr03 19 1176 213422 214585 F 1158 96.89 1381 accept 0 ALIGNMENT 1000 Y12-13h21.q1k chr14 41 1191 179184 180335 F 1151 96.79 1207 accept 0 ALIGNMENT 976 Y12-13h21.p1k chr14 1174 18 182150 183321 C 1157 96.02 1319 accept 0 ALIGNMENT 940 Y12-13h22.q1k chr06 29 1145 251165 252301 F 1117 94.99 1169 accept 0 ALIGNMENT 151 Y12-13h22.p1k chr07 515 925 23928 24337 F 411 79.56 1318 reject_low 1 ALIGNMENT 0 Y12-13h22.p1k chr07 62 514 23928 23927 F 453 0.00 1318 reject_low 1 ALIGNMENT 949 Y12-13h22.p1k chr06 1194 29 254343 255528 C 1166 94.94 1318 accept 0 ALIGNMENT 1026 Y12-13h24.p1k chr16 1292 31 923124 924397 C 1262 94.93 1310 accept 0 ALIGNMENT 1017 Y12-13h24.q1k chr16 40 1159 919671 920793 F 1120 96.96 1182 accept 0 ALIGNMENT 0 Y12-13i01.q1k chr01 103 903 160542 160541 F 801 0.00 1150 reject_low 11 ALIGNMENT 0 Y12-13i01.q1k chr08 903 313 388897 388896 C 591 0.00 1150 reject_low 7 ALIGNMENT 0 Y12-13i01.q1k chr15 62 210 980678 980677 F 149 0.00 1150 reject_low 9 ALIGNMENT 0 Y12-13i01.q1k chr12 62 210 92547 92546 F 149 0.00 1150 reject_low 6 ALIGNMENT 100 Y12-13i01.q1k chr06 209 319 101368 101479 F 111 97.30 1150 reject_low 1 ALIGNMENT 91 Y12-13i01.q1k chr14 208 312 547092 547197 F 105 96.19 1150 reject_low 4 ALIGNMENT 930 Y12-13i01.q1k chr15 40 1144 300924 302017 F 1105 95.93 1150 accept 0 ALIGNMENT 0 Y12-13i01.q1k chr01 62 209 139153 139152 F 148 0.00 1150 reject_low 5 ALIGNMENT 75 Y12-13i01.q1k chr15 211 319 980678 980789 F 109 90.83 1150 reject_low 9 ALIGNMENT 0 Y12-13i01.q1k chr02 449 903 353649 353648 F 455 0.00 1150 reject_low 8 ALIGNMENT 88 Y12-13i01.q1k chr08 312 211 388896 388998 C 102 96.08 1150 reject_low 7 ALIGNMENT 0 Y12-13i01.q1k chr01 313 903 139256 139255 F 591 0.00 1150 reject_low 5 ALIGNMENT 0 Y12-13i01.q1k chr14 313 903 568218 568217 F 591 0.00 1150 reject_low 13 ALIGNMENT 0 Y12-13i01.q1k chr08 210 62 388999 388998 C 149 0.00 1150 reject_low 7 ALIGNMENT 96 Y12-13i01.q1k chr15 211 316 464451 464556 F 106 97.17 1150 reject_low 3 ALIGNMENT 0 Y12-13i01.q1k chr14 103 207 567961 568112 F 105 0.00 1150 reject_low 13 ALIGNMENT 21 Y12-13i01.q1k chr01 68 102 166096 166130 F 35 88.57 1150 reject_low 12 ALIGNMENT 92 Y12-13i01.q1k chr12 211 319 92547 92656 F 109 95.41 1150 reject_low 6 ALIGNMENT 0 Y12-13i01.q1k chr06 320 903 101479 101478 F 584 0.00 1150 reject_low 1 ALIGNMENT 0 Y12-13i01.q1k chr15 62 210 464451 464450 F 149 0.00 1150 reject_low 3 ALIGNMENT 994 Y12-13i01.p1k chr15 1214 27 303630 304830 C 1188 95.37 1360 accept 0 ALIGNMENT 0 Y12-13i01.q1k chr15 320 903 980789 980788 F 584 0.00 1150 reject_low 9 ALIGNMENT 21 Y12-13i01.q1k chr01 68 102 160508 160542 F 35 88.57 1150 reject_low 11 ALIGNMENT 0 Y12-13i01.q1k chr15 317 903 464556 464555 F 587 0.00 1150 reject_low 3 ALIGNMENT 27 Y12-13i01.q1k chr02 413 448 353614 353649 F 36 100.00 1150 reject_low 8 ALIGNMENT 0 Y12-13i01.q1k chr12 320 903 92656 92655 F 584 0.00 1150 reject_low 6 ALIGNMENT 95 Y12-13i01.q1k chr01 210 312 139153 139256 F 103 98.06 1150 reject_low 5 ALIGNMENT 98 Y12-13i01.q1k chr13 319 211 196061 196170 C 109 97.25 1150 reject_low 2 ALIGNMENT 0 Y12-13i01.q1k chr01 415 62 31523 31522 C 354 0.00 1150 reject_low 10 ALIGNMENT 0 Y12-13i01.q1k chr01 103 903 166130 166129 F 801 0.00 1150 reject_low 12 ALIGNMENT 0 Y12-13i01.q1k chr13 903 320 196062 196061 C 584 0.00 1150 reject_low 2 ALIGNMENT 0 Y12-13i01.q1k chr14 313 903 547197 547196 F 591 0.00 1150 reject_low 4 ALIGNMENT 25 Y12-13i01.q1k chr01 448 416 31490 31522 C 33 100.00 1150 reject_low 10 ALIGNMENT 91 Y12-13i01.q1k chr14 208 312 568113 568218 F 105 96.19 1150 reject_low 13 ALIGNMENT 0 Y12-13i01.q1k chr02 62 412 353614 353613 F 351 0.00 1150 reject_low 8 ALIGNMENT 24 Y12-13i01.q1k chr14 68 102 567926 567960 F 35 91.43 1150 reject_low 13 ALIGNMENT 0 Y12-13i01.q1k chr01 903 449 31491 31490 C 455 0.00 1150 reject_low 10 ALIGNMENT 0 Y12-13i01.q1k chr06 62 208 101368 101367 F 147 0.00 1150 reject_low 1 ALIGNMENT 0 Y12-13i01.q1k chr13 210 62 196171 196170 C 149 0.00 1150 reject_low 2 ALIGNMENT 0 Y12-13i01.q1k chr14 62 207 547092 547091 F 146 0.00 1150 reject_low 4 ALIGNMENT 354 Y12-13i02.q1k chr02 549 58 657799 658287 C 492 92.28 1424 accept 0 ALIGNMENT 0 Y12-13i03.p1k chr14 659 829 102524 102523 F 171 0.00 829 ambiguous_trans 6 ALIGNMENT 0 Y12-13i03.p1k chr11 62 325 457783 457782 F 264 0.00 829 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-13i03.p1k chr07 829 461 817279 817278 C 369 0.00 829 ambiguous_trans 25 ALIGNMENT 0 Y12-13i03.p1k chr13 62 323 362584 362583 F 262 0.00 829 ambiguous_trans 2 ALIGNMENT 0 Y12-13i03.p1k chr13 829 658 189753 189752 C 172 0.00 829 ambiguous_trans 21 ALIGNMENT 0 Y12-13i03.p1k chr08 658 829 543941 543940 F 172 0.00 829 ambiguous_trans 19 ALIGNMENT 0 Y12-13i03.p1k chr11 659 829 517427 517426 F 171 0.00 829 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-13i03.p1k chr02 829 658 226625 226624 C 172 0.00 829 ambiguous_trans 4 ALIGNMENT 314 Y12-13i03.p1k chr11 326 658 517095 517427 F 333 100.00 829 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-13i03.p1k chr01 658 829 160575 160574 F 172 0.00 829 ambiguous_trans 23 ALIGNMENT 0 Y12-13i03.p1k chr02 345 62 265473 265472 C 284 0.00 829 ambiguous_trans 18 ALIGNMENT 307 Y12-13i03.p1k chr14 324 658 102190 102524 F 335 99.10 829 ambiguous_trans 6 ALIGNMENT 292 Y12-13i03.p1k chr11 326 657 457783 458114 F 332 97.89 829 ambiguous_trans_ua 11 ALIGNMENT 280 Y12-13i03.p1k chr10 659 324 472375 472716 C 336 96.43 829 ambiguous_trans 10 ALIGNMENT 0 Y12-13i03.p1k chr01 62 325 160239 160238 F 264 0.00 829 ambiguous_trans 23 ALIGNMENT 57 Y12-13i03.p1k chr07 460 349 817278 817387 C 112 86.61 829 ambiguous_trans 25 ALIGNMENT 313 Y12-13i03.p1k chr02 657 326 226624 226955 C 332 100.00 829 ambiguous_trans 4 ALIGNMENT 285 Y12-13i03.p1k chr13 657 346 184170 184481 C 312 99.36 829 ambiguous_trans 20 ALIGNMENT 0 Y12-13i03.p1k chr13 62 325 357004 357003 F 264 0.00 829 ambiguous_trans 5 ALIGNMENT 0 Y12-13i03.p1k chr13 345 62 190064 190063 C 284 0.00 829 ambiguous_trans 21 ALIGNMENT 0 Y12-13i03.p1k chr01 659 829 166164 166163 F 171 0.00 829 ambiguous_trans 22 ALIGNMENT 0 Y12-13i03.p1k chr01 62 323 165825 165824 F 262 0.00 829 ambiguous_trans 22 ALIGNMENT 0 Y12-13i03.p1k chr14 658 829 96941 96940 F 172 0.00 829 ambiguous_trans 9 ALIGNMENT 81 Y12-13i03.p1k chr15 539 410 594630 594759 C 130 90.00 829 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-13i03.p1k chr04 323 62 803233 803232 C 262 0.00 829 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-13i03.p1k chr02 345 62 259888 259887 C 284 0.00 829 ambiguous_trans 17 ALIGNMENT 285 Y12-13i03.p1k chr08 346 657 543630 543941 F 312 99.36 829 ambiguous_trans 19 ALIGNMENT 0 Y12-13i03.p1k chr15 829 658 600404 600403 C 172 0.00 829 ambiguous_trans 16 ALIGNMENT 0 Y12-13i03.q1k chr07 847 382 423988 423987 C 466 0.00 1210 reject_low 1 ALIGNMENT 0 Y12-13i03.p1k chr13 345 62 184482 184481 C 284 0.00 829 ambiguous_trans 20 ALIGNMENT 0 Y12-13i03.p1k chr13 658 829 357335 357334 F 172 0.00 829 ambiguous_trans 5 ALIGNMENT 0 Y12-13i03.p1k chr02 829 658 259577 259576 C 172 0.00 829 ambiguous_trans 17 ALIGNMENT 0 Y12-13i03.p1k chr07 62 345 817418 817417 F 284 0.00 829 ambiguous_trans 13 ALIGNMENT 302 Y12-13i03.p1k chr02 657 324 221040 221375 C 334 98.80 829 ambiguous_trans 8 ALIGNMENT 0 Y12-13i03.p1k chr14 62 325 96610 96609 F 264 0.00 829 ambiguous_trans 9 ALIGNMENT 285 Y12-13i03.p1k chr02 657 346 265161 265472 C 312 99.36 829 ambiguous_trans 18 ALIGNMENT 0 Y12-13i03.p1k chr15 409 62 594760 594759 C 348 0.00 829 ambiguous_trans_ua 24 ALIGNMENT 283 Y12-13i03.p1k chr04 657 324 802900 803232 C 334 97.01 829 ambiguous_trans_ua 12 ALIGNMENT 304 Y12-13i03.p1k chr14 326 657 96610 96941 F 332 99.10 829 ambiguous_trans 9 ALIGNMENT 315 Y12-13i03.p1k chr13 324 657 362584 362917 F 334 100.00 829 ambiguous_trans 2 ALIGNMENT 313 Y12-13i03.p1k chr13 326 657 357004 357335 F 332 100.00 829 ambiguous_trans 5 ALIGNMENT 0 Y12-13i03.p1k chr07 829 658 535216 535215 C 172 0.00 829 ambiguous_trans_ua 7 ALIGNMENT 0 Y12-13i03.p1k chr02 323 62 221376 221375 C 262 0.00 829 ambiguous_trans 8 ALIGNMENT 0 Y12-13i03.p1k chr02 829 658 265162 265161 C 172 0.00 829 ambiguous_trans 18 ALIGNMENT 0 Y12-13i03.p1k chr02 325 62 226956 226955 C 264 0.00 829 ambiguous_trans 4 ALIGNMENT 0 Y12-13i03.p1k chr07 325 62 535547 535546 C 264 0.00 829 ambiguous_trans_ua 7 ALIGNMENT 288 Y12-13i03.p1k chr15 657 346 594821 595132 C 312 99.68 829 ambiguous_trans 15 ALIGNMENT 0 Y12-13i03.p1k chr07 348 62 817388 817387 C 287 0.00 829 ambiguous_trans 25 ALIGNMENT 0 Y12-13i03.p1k chr10 829 660 472376 472375 C 170 0.00 829 ambiguous_trans 10 ALIGNMENT 0 Y12-13i03.p1k chr13 658 829 362917 362916 F 172 0.00 829 ambiguous_trans 2 ALIGNMENT 288 Y12-13i03.p1k chr07 346 657 817418 817729 F 312 99.68 829 ambiguous_trans 13 ALIGNMENT 109 Y12-13i03.q1k chr07 381 35 423987 424333 C 347 77.81 1210 reject_low 1 ALIGNMENT 0 Y12-13i03.p1k chr14 829 658 102550 102549 C 172 0.00 829 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-13i03.p1k chr14 62 323 102190 102189 F 262 0.00 829 ambiguous_trans 6 ALIGNMENT 0 Y12-13i03.p1k chr10 323 62 472717 472716 C 262 0.00 829 ambiguous_trans 10 ALIGNMENT 288 Y12-13i03.p1k chr15 657 346 600403 600714 C 312 99.68 829 ambiguous_trans 16 ALIGNMENT 915 Y12-13i03.q1k chr07 1210 35 208218 209374 C 1176 94.47 1210 accept 0 ALIGNMENT 0 Y12-13i03.p1k chr11 658 829 458114 458113 F 172 0.00 829 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-13i03.p1k chr07 658 829 817729 817728 F 172 0.00 829 ambiguous_trans 13 ALIGNMENT 0 Y12-13i03.p1k chr11 62 325 517095 517094 F 264 0.00 829 ambiguous_trans_ua 3 ALIGNMENT 214 Y12-13i03.p1k chr01 324 658 165825 166164 F 335 90.15 829 ambiguous_trans 22 ALIGNMENT 0 Y12-13i03.p1k chr13 829 658 184171 184170 C 172 0.00 829 ambiguous_trans 20 ALIGNMENT 0 Y12-13i03.p1k chr15 829 540 594631 594630 C 290 0.00 829 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-13i03.p1k chr07 62 345 823000 822999 F 284 0.00 829 ambiguous_trans 14 ALIGNMENT 0 Y12-13i03.p1k chr04 829 658 802901 802900 C 172 0.00 829 ambiguous_trans_ua 12 ALIGNMENT 285 Y12-13i03.p1k chr02 657 346 259576 259887 C 312 99.36 829 ambiguous_trans 17 ALIGNMENT 210 Y12-13i03.p1k chr01 326 657 160239 160575 F 332 90.06 829 ambiguous_trans 23 ALIGNMENT 0 Y12-13i03.p1k chr14 627 62 102579 102578 C 566 0.00 829 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-13i03.p1k chr15 345 62 600715 600714 C 284 0.00 829 ambiguous_trans 16 ALIGNMENT 288 Y12-13i03.p1k chr07 346 657 823000 823311 F 312 99.68 829 ambiguous_trans 14 ALIGNMENT 0 Y12-13i03.p1k chr15 345 62 595133 595132 C 284 0.00 829 ambiguous_trans 15 ALIGNMENT 285 Y12-13i03.p1k chr13 657 346 189752 190063 C 312 99.36 829 ambiguous_trans 21 ALIGNMENT 0 Y12-13i03.p1k chr07 658 829 823311 823310 F 172 0.00 829 ambiguous_trans 14 ALIGNMENT 0 Y12-13i03.p1k chr08 62 345 543630 543629 F 284 0.00 829 ambiguous_trans 19 ALIGNMENT 29 Y12-13i03.p1k chr14 657 628 102549 102578 C 30 100.00 829 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-13i03.p1k chr02 829 658 221041 221040 C 172 0.00 829 ambiguous_trans 8 ALIGNMENT 0 Y12-13i03.p1k chr15 829 658 594822 594821 C 172 0.00 829 ambiguous_trans 15 ALIGNMENT 310 Y12-13i03.p1k chr07 657 326 535215 535546 C 332 99.70 829 ambiguous_trans_ua 7 ALIGNMENT 731 Y12-13i04.p1k chr12 943 20 467414 468323 C 924 95.13 1347 accept 1 ALIGNMENT 985 Y12-13i04.q1k chr12 34 1218 463585 464750 F 1185 96.03 1219 accept 1 ALIGNMENT 731 Y12-13i04.p1k chr12 943 20 458277 459186 C 924 95.13 1347 accept 0 ALIGNMENT 985 Y12-13i04.q1k chr12 34 1218 454448 455613 F 1185 96.03 1219 accept 0 ALIGNMENT 930 Y12-13i05.q1k chr10 35 1154 123304 124418 F 1120 95.80 1255 accept 0 ALIGNMENT 1006 Y12-13i05.p1k chr10 1151 17 128169 129318 C 1135 97.71 1395 accept 0 ALIGNMENT 1099 Y12-13i07.p1k chr07 1272 21 81277 82540 C 1252 96.49 1430 accept 0 ALIGNMENT 914 Y12-13i07.q1k chr07 37 1150 79785 80905 F 1114 95.24 1256 accept 0 ALIGNMENT 791 Y12-13i08.q1k chr15 31 886 485207 486062 F 856 98.25 1248 accept 0 ALIGNMENT 1028 Y12-13i08.p1k chr15 1168 21 488582 489743 C 1148 97.47 1392 accept 0 ALIGNMENT 1040 Y12-13i09.p1k chr04 19 1204 682495 683691 F 1186 97.05 1425 accept 0 ALIGNMENT 985 Y12-13i09.q1k chr04 1243 34 685266 686490 C 1210 95.37 1258 accept 0 ALIGNMENT 1027 Y12-13i10.p1k chr10 22 1186 719851 721027 F 1165 96.91 1424 accept 0 ALIGNMENT 1003 Y12-13i10.q1k chr10 1281 37 724851 726090 C 1245 95.10 1289 accept 0 ALIGNMENT 23 Y12-13i11.p1k chr08 125 86 111523 111561 C 40 95.00 1527 reject_low 1 ALIGNMENT 0 Y12-13i11.p1k chr08 629 126 111524 111523 C 504 0.00 1527 reject_low 1 ALIGNMENT 585 Y12-13i11.q1k chr07 34 669 270418 271053 F 636 97.48 1376 accept 0 ALIGNMENT 0 Y12-13i11.p1k chr08 85 62 111562 111561 C 24 0.00 1527 reject_low 1 ALIGNMENT 562 Y12-13i11.p1k chr07 736 16 274089 274806 C 721 95.28 1527 accept 0 ALIGNMENT 892 Y12-13i12.q1k chr07 34 1098 407254 408343 F 1065 96.34 1334 accept 0 ALIGNMENT 988 Y12-13i12.p1k chr07 1124 20 411168 412284 C 1105 97.19 1391 accept 0 ALIGNMENT 0 Y12-13i13.p1k chr06 62 1004 115155 115154 F 943 0.00 1365 reject_low 2 ALIGNMENT 940 Y12-13i13.p1k chr06 23 1040 114141 115162 F 1018 98.43 1365 accept 0 ALIGNMENT 77 Y12-13i13.p1k chr06 1005 1146 115155 115307 F 142 87.32 1365 reject_low 2 ALIGNMENT 376 Y12-13i13.q1k chr05 1194 664 290004 290542 C 531 91.15 1252 reject_low 1 ALIGNMENT 0 Y12-13i13.q1k chr05 663 62 290543 290542 C 602 0.00 1252 reject_low 1 ALIGNMENT 1012 Y12-13i13.q1k chr06 1194 36 117580 118748 C 1159 96.89 1252 accept 0 ALIGNMENT 0 Y12-13i14.p1k chr13 605 62 550803 550802 C 544 0.00 1427 reject_low 2 ALIGNMENT 302 Y12-13i14.p1k chr13 1161 606 550249 550802 C 556 86.15 1427 reject_low 2 ALIGNMENT 974 Y12-13i14.p1k chr04 18 1161 308202 309344 F 1144 96.24 1427 accept_chi 0 ALIGNMENT 700 Y12-13i14.q1k chr11 30 811 87305 88086 F 782 97.44 1263 accept_chi 1 ALIGNMENT 944 Y12-13i15.p1k chr07 24 1105 475009 476105 F 1082 96.40 1356 accept 0 ALIGNMENT 598 Y12-13i15.q1k chr07 781 36 479050 479788 C 746 95.58 1280 accept 0 ALIGNMENT 365 Y12-13i16.q1k chr12 28 424 452626 453022 F 397 97.48 1340 accept 0 ALIGNMENT 719 Y12-13i16.p1k chr12 838 17 464914 465739 C 822 96.35 1409 accept 1 ALIGNMENT 719 Y12-13i16.p1k chr12 838 17 455777 456602 C 822 96.35 1409 accept 0 ALIGNMENT 365 Y12-13i16.q1k chr12 28 424 461763 462159 F 397 97.48 1340 accept 1 ALIGNMENT 848 Y12-13i17.q1k chr09 1075 35 334554 335597 C 1041 95.20 1216 accept_chi 1 ALIGNMENT 883 Y12-13i17.p1k chr06 1119 17 79703 80787 C 1103 95.10 1430 accept_chi 0 ALIGNMENT 0 Y12-13i20.p1k chr07 913 668 1070881 1070880 C 246 0.00 1348 reject_low 2 ALIGNMENT 914 Y12-13i20.p1k chr02 1127 30 800608 801721 C 1098 95.26 1348 accept 0 ALIGNMENT 0 Y12-13i20.p1k chr07 209 62 1071338 1071337 C 148 0.00 1348 reject_low 2 ALIGNMENT 1033 Y12-13i20.q1k chr02 34 1189 798158 799319 F 1156 97.40 1200 accept 0 ALIGNMENT 0 Y12-13i20.p1k chr16 913 878 931729 931728 C 36 0.00 1348 reject_low 1 ALIGNMENT 156 Y12-13i20.p1k chr16 877 50 931728 932561 C 828 73.79 1348 reject_low 1 ALIGNMENT 141 Y12-13i20.p1k chr07 667 210 1070880 1071337 C 458 77.51 1348 reject_low 2 ALIGNMENT 113 Y12-13i22.q1k chr02 468 344 262197 262321 C 125 97.60 1204 reject_low 3 ALIGNMENT 0 Y12-13i22.q1k chr04 469 788 990013 990012 F 320 0.00 1204 reject_low 5 ALIGNMENT 0 Y12-13i22.q1k chr05 469 788 446690 446689 F 320 0.00 1204 reject_low 6 ALIGNMENT 0 Y12-13i22.q1k chr16 788 469 847039 847038 C 320 0.00 1204 reject_low 23 ALIGNMENT 113 Y12-13i22.q1k chr01 344 468 163412 163536 F 125 97.60 1204 reject_low 1 ALIGNMENT 0 Y12-13i22.q1k chr12 343 62 653576 653575 C 282 0.00 1204 reject_low 15 ALIGNMENT 0 Y12-13i22.q1k chr02 788 469 262198 262197 C 320 0.00 1204 reject_low 3 ALIGNMENT 0 Y12-13i22.q1k chr12 62 343 479148 479147 F 282 0.00 1204 reject_low 14 ALIGNMENT 0 Y12-13i22.q1k chr04 469 788 881592 881591 F 320 0.00 1204 reject_low 4 ALIGNMENT 113 Y12-13i22.q1k chr12 344 468 218255 218379 F 125 97.60 1204 reject_low 13 ALIGNMENT 0 Y12-13i22.q1k chr13 62 343 360172 360171 F 282 0.00 1204 reject_low 18 ALIGNMENT 0 Y12-13i22.q1k chr02 343 62 262322 262321 C 282 0.00 1204 reject_low 3 ALIGNMENT 0 Y12-13i22.q1k chr10 343 62 475129 475128 C 282 0.00 1204 reject_low 11 ALIGNMENT 113 Y12-13i22.q1k chr12 344 468 479148 479272 F 125 97.60 1204 reject_low 14 ALIGNMENT 113 Y12-13i22.q1k chr16 344 468 807811 807935 F 125 97.60 1204 reject_low 22 ALIGNMENT 113 Y12-13i22.q1k chr08 344 468 546778 546902 F 125 97.60 1204 reject_low 10 ALIGNMENT 0 Y12-13i22.q1k chr16 469 788 853923 853922 F 320 0.00 1204 reject_low 24 ALIGNMENT 0 Y12-13i22.q1k chr01 469 788 163536 163535 F 320 0.00 1204 reject_low 1 ALIGNMENT 113 Y12-13i22.q1k chr05 344 468 446566 446690 F 125 97.60 1204 reject_low 6 ALIGNMENT 113 Y12-13i22.q1k chr13 344 468 375870 375994 F 125 97.60 1204 reject_low 19 ALIGNMENT 113 Y12-13i22.q1k chr16 344 468 853799 853923 F 125 97.60 1204 reject_low 24 ALIGNMENT 0 Y12-13i22.q1k chr01 62 343 163412 163411 F 282 0.00 1204 reject_low 1 ALIGNMENT 0 Y12-13i22.q1k chr14 62 343 99778 99777 F 282 0.00 1204 reject_low 20 ALIGNMENT 0 Y12-13i22.q1k chr16 62 343 853799 853798 F 282 0.00 1204 reject_low 24 ALIGNMENT 0 Y12-13i22.q1k chr13 469 788 360296 360295 F 320 0.00 1204 reject_low 18 ALIGNMENT 0 Y12-13i22.q1k chr13 343 62 186916 186915 C 282 0.00 1204 reject_low 16 ALIGNMENT 113 Y12-13i22.q1k chr07 468 344 538391 538515 C 125 97.60 1204 reject_low 8 ALIGNMENT 0 Y12-13i22.q1k chr08 469 788 546902 546901 F 320 0.00 1204 reject_low 10 ALIGNMENT 0 Y12-13i22.q1k chr04 788 469 805521 805520 C 320 0.00 1204 accept 0 ALIGNMENT 0 Y12-13i22.q1k chr16 343 62 847163 847162 C 282 0.00 1204 reject_low 23 ALIGNMENT 0 Y12-13i22.q1k chr13 788 469 186792 186791 C 320 0.00 1204 reject_low 16 ALIGNMENT 0 Y12-13i22.q1k chr02 343 62 223788 223787 C 282 0.00 1204 reject_low 2 ALIGNMENT 113 Y12-13i22.q1k chr14 344 468 99778 99902 F 125 97.60 1204 reject_low 20 ALIGNMENT 397 Y12-13i22.q1k chr04 468 31 805520 805957 C 438 98.40 1204 accept 0 ALIGNMENT 0 Y12-13i22.q1k chr16 469 788 807935 807934 F 320 0.00 1204 reject_low 22 ALIGNMENT 1011 Y12-13i22.p1k chr04 21 1227 800628 801855 F 1207 95.19 1361 accept 0 ALIGNMENT 0 Y12-13i22.q1k chr12 62 343 218255 218254 F 282 0.00 1204 reject_low 13 ALIGNMENT 0 Y12-13i22.q1k chr07 469 788 565141 565140 F 320 0.00 1204 reject_low 9 ALIGNMENT 113 Y12-13i22.q1k chr05 344 468 495665 495789 F 125 97.60 1204 reject_low 7 ALIGNMENT 113 Y12-13i22.q1k chr02 468 344 223663 223787 C 125 97.60 1204 reject_low 2 ALIGNMENT 0 Y12-13i22.q1k chr15 343 62 597567 597566 C 282 0.00 1204 reject_low 21 ALIGNMENT 113 Y12-13i22.q1k chr13 344 468 360172 360296 F 125 97.60 1204 reject_low 18 ALIGNMENT 0 Y12-13i22.q1k chr08 62 343 546778 546777 F 282 0.00 1204 reject_low 10 ALIGNMENT 0 Y12-13i22.q1k chr02 788 469 223664 223663 C 320 0.00 1204 reject_low 2 ALIGNMENT 0 Y12-13i22.q1k chr07 788 469 538392 538391 C 320 0.00 1204 reject_low 8 ALIGNMENT 0 Y12-13i22.q1k chr12 788 469 653452 653451 C 320 0.00 1204 reject_low 15 ALIGNMENT 0 Y12-13i22.q1k chr15 788 469 597443 597442 C 320 0.00 1204 reject_low 21 ALIGNMENT 0 Y12-13i22.q1k chr13 62 343 375870 375869 F 282 0.00 1204 reject_low 19 ALIGNMENT 113 Y12-13i22.q1k chr12 468 344 653451 653575 C 125 97.60 1204 reject_low 15 ALIGNMENT 0 Y12-13i22.q1k chr04 62 343 881468 881467 F 282 0.00 1204 reject_low 4 ALIGNMENT 113 Y12-13i22.q1k chr16 468 344 847038 847162 C 125 97.60 1204 reject_low 23 ALIGNMENT 0 Y12-13i22.q1k chr14 469 788 99902 99901 F 320 0.00 1204 reject_low 20 ALIGNMENT 113 Y12-13i22.q1k chr13 468 344 186791 186915 C 125 97.60 1204 reject_low 16 ALIGNMENT 0 Y12-13i22.q1k chr13 788 469 198959 198958 C 320 0.00 1204 reject_low 17 ALIGNMENT 113 Y12-13i22.q1k chr10 468 344 480588 480712 C 125 97.60 1204 reject_low 12 ALIGNMENT 113 Y12-13i22.q1k chr07 344 468 565017 565141 F 125 97.60 1204 reject_low 9 ALIGNMENT 0 Y12-13i22.q1k chr07 62 343 565017 565016 F 282 0.00 1204 reject_low 9 ALIGNMENT 0 Y12-13i22.q1k chr05 469 788 495789 495788 F 320 0.00 1204 reject_low 7 ALIGNMENT 0 Y12-13i22.q1k chr05 62 343 495665 495664 F 282 0.00 1204 reject_low 7 ALIGNMENT 113 Y12-13i22.q1k chr10 468 344 475004 475128 C 125 97.60 1204 reject_low 11 ALIGNMENT 0 Y12-13i22.q1k chr05 62 343 446566 446565 F 282 0.00 1204 reject_low 6 ALIGNMENT 0 Y12-13i22.q1k chr13 469 788 375994 375993 F 320 0.00 1204 reject_low 19 ALIGNMENT 113 Y12-13i22.q1k chr04 344 468 881468 881592 F 125 97.60 1204 reject_low 4 ALIGNMENT 113 Y12-13i22.q1k chr13 468 344 198958 199082 C 125 97.60 1204 reject_low 17 ALIGNMENT 0 Y12-13i22.q1k chr04 62 343 989889 989888 F 282 0.00 1204 reject_low 5 ALIGNMENT 113 Y12-13i22.q1k chr04 344 468 989889 990013 F 125 97.60 1204 reject_low 5 ALIGNMENT 0 Y12-13i22.q1k chr07 343 62 538516 538515 C 282 0.00 1204 reject_low 8 ALIGNMENT 0 Y12-13i22.q1k chr13 343 62 199083 199082 C 282 0.00 1204 reject_low 17 ALIGNMENT 0 Y12-13i22.q1k chr16 62 343 807811 807810 F 282 0.00 1204 reject_low 22 ALIGNMENT 113 Y12-13i22.q1k chr15 468 344 597442 597566 C 125 97.60 1204 reject_low 21 ALIGNMENT 0 Y12-13i22.q1k chr10 788 469 475005 475004 C 320 0.00 1204 reject_low 11 ALIGNMENT 0 Y12-13i22.q1k chr12 469 788 218379 218378 F 320 0.00 1204 reject_low 13 ALIGNMENT 0 Y12-13i22.q1k chr12 469 788 479272 479271 F 320 0.00 1204 reject_low 14 ALIGNMENT 0 Y12-13i22.q1k chr10 343 62 480713 480712 C 282 0.00 1204 reject_low 12 ALIGNMENT 0 Y12-13i22.q1k chr10 788 469 480589 480588 C 320 0.00 1204 reject_low 12 ALIGNMENT 646 Y12-13i23.q1k chr12 851 31 773291 774123 C 821 94.15 1277 accept 0 ALIGNMENT 1002 Y12-13i23.p1k chr12 20 1252 770124 771367 F 1233 95.13 1303 accept 0 ALIGNMENT 497 Y12-13i24.q1k chr02 600 27 90547 91133 C 574 96.69 1273 accept_chi 1 ALIGNMENT 764 Y12-13i24.p1k chr16 1151 235 757807 758739 C 917 95.53 1295 accept_chi 0 ALIGNMENT 1057 Y12-13j02.p1k chr04 26 1242 213424 214651 F 1217 96.14 1346 accept 0 ALIGNMENT 979 Y12-13j02.q1k chr04 1140 31 218320 219442 C 1110 97.57 1140 accept 0 ALIGNMENT 872 Y12-13j04.q1k chr13 32 1063 385013 386032 F 1032 96.41 1228 accept 0 ALIGNMENT 1011 Y12-13j04.p1k chr13 1187 18 388423 389619 C 1170 95.81 1374 accept 0 ALIGNMENT 977 Y12-13j05.p1k chr13 24 1210 704797 706000 F 1187 95.87 1434 accept 0 ALIGNMENT 798 Y12-13j05.q1k chr13 1023 33 709680 710658 C 991 95.66 1338 accept 0 ALIGNMENT 809 Y12-13j06.p1k chr04 17 1025 1296388 1297406 F 1009 94.85 1447 accept 0 ALIGNMENT 987 Y12-13j06.q1k chr04 1209 31 1300086 1301261 C 1179 95.84 1270 accept 0 ALIGNMENT 0 Y12-13j07.p1k chr03 854 383 149719 149718 C 472 0.00 1428 reject_low 43 ALIGNMENT 78 Y12-13j07.p1k chr16 120 201 338842 338923 F 82 98.78 1428 reject_low 3 ALIGNMENT 53 Y12-13j07.p1k chr02 386 313 265399 265472 C 74 93.24 1428 reject_low 45 ALIGNMENT 60 Y12-13j07.p1k chr01 295 386 165829 165920 F 92 91.30 1428 reject_low 23 ALIGNMENT 53 Y12-13j07.p1k chr01 386 305 183374 183456 C 82 91.46 1428 reject_low 35 ALIGNMENT 0 Y12-13j07.p1k chr02 304 62 221362 221361 C 243 0.00 1428 reject_low 37 ALIGNMENT 0 Y12-13j07.p1k chr10 292 62 541011 541010 C 231 0.00 1428 reject_low 18 ALIGNMENT 0 Y12-13j07.p1k chr04 854 387 1151268 1151267 C 468 0.00 1428 reject_low 31 ALIGNMENT 60 Y12-13j07.p1k chr08 386 302 133909 133993 C 85 92.94 1428 reject_low 28 ALIGNMENT 0 Y12-13j07.p1k chr10 302 62 472705 472704 C 241 0.00 1428 reject_low 29 ALIGNMENT 0 Y12-13j07.p1k chr10 62 468 483728 483727 F 407 0.00 1428 reject_low 10 ALIGNMENT 69 Y12-13j07.p1k chr03 196 125 149917 149988 C 72 100.00 1428 reject_low 43 ALIGNMENT 64 Y12-13j07.p1k chr02 469 614 221213 221361 F 146 83.56 1428 reject_low 14 ALIGNMENT 57 Y12-13j07.p1k chr02 386 295 226862 226953 C 92 90.22 1428 reject_low 26 ALIGNMENT 0 Y12-13j07.p1k chr01 854 615 160252 160251 C 240 0.00 1428 reject_low 6 ALIGNMENT 71 Y12-13j07.p1k chr01 614 469 160251 160397 C 146 84.93 1428 reject_low 6 ALIGNMENT 56 Y12-13j07.p1k chr10 614 506 354462 354570 C 109 85.32 1428 reject_low 17 ALIGNMENT 0 Y12-13j07.p1k chr01 62 468 183309 183308 F 407 0.00 1428 reject_low 19 ALIGNMENT 0 Y12-13j07.p1k chr05 118 62 100211 100210 C 57 0.00 1428 reject_low 4 ALIGNMENT 0 Y12-13j07.p1k chr01 468 62 160398 160397 C 407 0.00 1428 reject_low 6 ALIGNMENT 39 Y12-13j07.p1k chr10 614 504 203716 203824 C 111 81.08 1428 reject_low 33 ALIGNMENT 0 Y12-13j07.p1k chr12 387 854 731762 731761 F 468 0.00 1428 reject_low 34 ALIGNMENT 0 Y12-13j07.p1k chr05 468 62 443552 443551 C 407 0.00 1428 reject_low 12 ALIGNMENT 0 Y12-13j07.p1k chr04 294 62 1207026 1207025 C 233 0.00 1428 reject_low 24 ALIGNMENT 0 Y12-13j07.p1k chr10 503 62 203825 203824 C 442 0.00 1428 reject_low 33 ALIGNMENT 59 Y12-13j07.p1k chr10 469 614 540852 540998 F 146 82.19 1428 reject_low 16 ALIGNMENT 0 Y12-13j07.p1k chr15 615 854 703751 703750 F 240 0.00 1428 reject_low 48 ALIGNMENT 0 Y12-13j07.p1k chr04 469 62 1151433 1151432 C 408 0.00 1428 reject_low 39 ALIGNMENT 234 Y12-13j07.p1k chr15 288 16 710109 710383 C 273 96.34 1428|2,0 accept_trans 0 ALIGNMENT 0 Y12-13j07.p1k chr12 62 299 731677 731676 F 238 0.00 1428 reject_low 34 ALIGNMENT 53 Y12-13j07.p1k chr12 313 386 215101 215174 F 74 93.24 1428 reject_low 36 ALIGNMENT 0 Y12-13j07.p1k chr04 854 387 1206935 1206934 C 468 0.00 1428 reject_low 24 ALIGNMENT 54 Y12-13j07.p1k chr05 295 386 443395 443486 F 92 89.13 1428 reject_low 27 ALIGNMENT 57 Y12-13j07.p1k chr04 386 302 1151267 1151351 C 85 91.76 1428 reject_low 31 ALIGNMENT 0 Y12-13j07.p1k chr08 468 62 116575 116574 C 407 0.00 1428 reject_low 15 ALIGNMENT 0 Y12-13j07.p1k chr10 854 387 483794 483793 C 468 0.00 1428 reject_low 30 ALIGNMENT 0 Y12-13j07.p1k chr03 313 197 149787 149916 C 117 0.00 1428 reject_low 43 ALIGNMENT 34 Y12-13j07.p1k chr10 577 504 541057 541130 C 74 83.78 1428 reject_low 38 ALIGNMENT 0 Y12-13j07.p1k chr02 312 62 265473 265472 C 251 0.00 1428 reject_low 45 ALIGNMENT 0 Y12-13j07.p1k chr12 468 62 215240 215239 C 407 0.00 1428 reject_low 13 ALIGNMENT 0 Y12-13j07.p1k chr16 62 119 338842 338841 F 58 0.00 1428 reject_low 3 ALIGNMENT 71 Y12-13j07.p1k chr10 469 614 472556 472702 F 146 84.93 1428 reject_low 9 ALIGNMENT 0 Y12-13j07.p1k chr01 62 294 160241 160240 F 233 0.00 1428 reject_low 22 ALIGNMENT 69 Y12-13j07.p1k chr04 469 614 1151203 1151348 F 146 84.93 1428 reject_low 11 ALIGNMENT 0 Y12-13j07.p1k chr10 387 854 354543 354542 F 468 0.00 1428 reject_low 25 ALIGNMENT 0 Y12-13j07.q1k chr15 736 915 461248 461247 F 180 0.00 1268 reject_low 2 ALIGNMENT 0 Y12-13j07.p1k chr10 389 854 541103 541102 F 466 0.00 1428 reject_low 40 ALIGNMENT 0 Y12-13j07.p1k chr10 62 301 203713 203712 F 240 0.00 1428 reject_low 32 ALIGNMENT 0 Y12-13j07.p1k chr10 854 615 354463 354462 C 240 0.00 1428 reject_low 17 ALIGNMENT 49 Y12-13j07.p1k chr01 469 614 183309 183456 F 146 80.14 1428 reject_low 19 ALIGNMENT 0 Y12-13j07.p1k chr10 62 298 354456 354455 F 237 0.00 1428 reject_low 25 ALIGNMENT 0 Y12-13j07.p1k chr01 468 62 165986 165985 C 407 0.00 1428 reject_low 7 ALIGNMENT 0 Y12-13j07.p1k chr08 854 615 116429 116428 C 240 0.00 1428 reject_low 15 ALIGNMENT 0 Y12-13j07.p1k chr10 302 62 483877 483876 C 241 0.00 1428 reject_low 30 ALIGNMENT 0 Y12-13j07.p1k chr12 62 312 215101 215100 F 251 0.00 1428 reject_low 36 ALIGNMENT 28 Y12-13j07.p1k chr02 475 435 258881 258921 C 41 92.68 1428 reject_low 44,45 ALIGNMENT 0 Y12-13j07.p1k chr02 383 468 258755 265333 F 86 0.00 1428 reject_low 47 ALIGNMENT 0 Y12-13j07.p1k chr02 615 854 226943 226942 F 240 0.00 1428 reject_low 8 ALIGNMENT 0 Y12-13j07.p1k chr10 503 62 541131 541130 C 442 0.00 1428 reject_low 38 ALIGNMENT 0 Y12-13j07.p1k chr10 62 468 472556 472555 F 407 0.00 1428 reject_low 9 ALIGNMENT 0 Y12-13j07.p1k chr05 854 606 443415 443414 C 249 0.00 1428 reject_low 12 ALIGNMENT 69 Y12-13j07.p1k chr12 605 469 215102 215239 C 137 85.40 1428 reject_low 13 ALIGNMENT 0 Y12-13j07.p1k chr08 387 854 116509 116508 F 468 0.00 1428 reject_low 20 ALIGNMENT 55 Y12-13j07.p1k chr10 386 293 540917 541010 C 94 89.36 1428 reject_low 18 ALIGNMENT 0 Y12-13j07.p1k chr02 854 387 226863 226862 C 468 0.00 1428 reject_low 26 ALIGNMENT 0 Y12-13j07.p1k chr15 389 530 703526 703667 F 142 0.00 1428 reject_low 48 ALIGNMENT 0 Y12-13j07.p1k chr02 62 312 258685 258684 F 251 0.00 1428 reject_low 46,47 ALIGNMENT 0 Y12-13j07.p1k chr10 62 468 540852 540851 F 407 0.00 1428 reject_low 16 ALIGNMENT 0 Y12-13j07.p1k chr10 854 578 541058 541057 C 277 0.00 1428 reject_low 38 ALIGNMENT 0 Y12-13j07.p1k chr04 62 503 1206905 1206904 F 442 0.00 1428 reject_low 21 ALIGNMENT 0 Y12-13j07.p1k chr12 387 854 215174 215173 F 468 0.00 1428 reject_low 36 ALIGNMENT 30 Y12-13j07.p1k chr02 313 382 258685 258754 F 70 84.29 1428 reject_low 46,47 ALIGNMENT 60 Y12-13j07.p1k chr04 386 295 1206934 1207025 C 92 91.30 1428 reject_low 24 ALIGNMENT 0 Y12-13j07.p1k chr02 434 387 258922 259813 C 48 0.00 1428 reject_low 44 ALIGNMENT 66 Y12-13j07.p1k chr02 469 605 265334 265471 F 137 84.67 1428 reject_low 47 ALIGNMENT 0 Y12-13j07.p1k chr04 301 62 1151352 1151351 C 240 0.00 1428 reject_low 31 ALIGNMENT 52 Y12-13j07.p1k chr04 504 614 1206905 1207015 F 111 83.78 1428 reject_low 21 ALIGNMENT 0 Y12-13j07.p1k chr10 62 314 354420 354419 F 253 0.00 1428 reject_low 42 ALIGNMENT 0 Y12-13j07.p1k chr04 615 854 1207015 1207014 F 240 0.00 1428 reject_low 21 ALIGNMENT 0 Y12-13j07.p1k chr02 854 387 221279 221278 C 468 0.00 1428 reject_low 37 ALIGNMENT 71 Y12-13j07.p1k chr02 469 614 226797 226943 F 146 84.93 1428 reject_low 8 ALIGNMENT 0 Y12-13j07.p1k chr10 615 854 472702 472701 F 240 0.00 1428 reject_low 9 ALIGNMENT 53 Y12-13j07.p1k chr02 386 313 259814 259887 C 74 93.24 1428 reject_low 44 ALIGNMENT 0 Y12-13j07.p1k chr01 854 615 165840 165839 C 240 0.00 1428 reject_low 7 ALIGNMENT 0 Y12-13j07.p1k chr10 345 854 354449 354448 F 510 0.00 1428 reject_low 42 ALIGNMENT 0 Y12-13j07.p1k chr10 62 123 517726 517725 F 62 0.00 1428 reject_low 5 ALIGNMENT 0 Y12-13j07.p1k chr05 387 854 443486 443485 F 468 0.00 1428 reject_low 27 ALIGNMENT 0 Y12-13j07.p1k chr01 615 854 183456 183455 F 240 0.00 1428 reject_low 19 ALIGNMENT 0 Y12-13j07.p1k chr02 606 854 265471 265470 F 249 0.00 1428 reject_low 47 ALIGNMENT 289 Y12-13j07.q1k chr15 55 735 460568 461248 F 681 81.64 1268 reject_low 2 ALIGNMENT 0 Y12-13j07.p1k chr04 854 508 1151395 1151394 C 347 0.00 1428 reject_low 39 ALIGNMENT 0 Y12-13j07.p1k chr05 854 197 100134 100133 C 658 0.00 1428 reject_low 4 ALIGNMENT 0 Y12-13j07.p1k chr08 854 387 133910 133909 C 468 0.00 1428 reject_low 28 ALIGNMENT 0 Y12-13j07.p1k chr04 62 468 1151203 1151202 F 407 0.00 1428 reject_low 11 ALIGNMENT 0 Y12-13j07.p1k chr03 592 854 149772 149771 F 263 0.00 1428 reject_low 41 ALIGNMENT 0 Y12-13j07.p1k chr04 615 854 1151348 1151347 F 240 0.00 1428 reject_low 11 ALIGNMENT 0 Y12-13j07.p1k chr10 615 854 483874 483873 F 240 0.00 1428 reject_low 10 ALIGNMENT 0 Y12-13j07.p1k chr02 606 854 259886 259885 F 249 0.00 1428 reject_low 46 ALIGNMENT 0 Y12-13j07.p1k chr02 434 387 258922 265398 C 48 0.00 1428 reject_low 45 ALIGNMENT 0 Y12-13j07.p1k chr05 62 294 443395 443394 F 233 0.00 1428 reject_low 27 ALIGNMENT 0 Y12-13j07.p1k chr02 854 476 258882 258881 C 379 0.00 1428 reject_low 44,45 ALIGNMENT 60 Y12-13j07.p1k chr01 295 386 160241 160332 F 92 91.30 1428 reject_low 22 ALIGNMENT 0 Y12-13j07.p1k chr10 854 615 203717 203716 C 240 0.00 1428 reject_low 33 ALIGNMENT 0 Y12-13j07.p1k chr15 286 287 703770 710110 C 0 0.00 1428 accept_trans 0 ALIGNMENT 0 Y12-13j07.p1k chr10 615 854 540998 540997 F 240 0.00 1428 reject_low 16 ALIGNMENT 0 Y12-13j07.p1k chr02 615 854 221361 221360 F 240 0.00 1428 reject_low 14 ALIGNMENT 50 Y12-13j07.p1k chr02 386 305 221278 221361 C 82 90.24 1428 reject_low 37 ALIGNMENT 71 Y12-13j07.p1k chr01 614 469 165839 165985 C 146 84.93 1428 reject_low 7 ALIGNMENT 69 Y12-13j07.p1k chr05 605 469 443414 443551 C 137 85.40 1428 reject_low 12 ALIGNMENT 71 Y12-13j07.p1k chr10 124 196 517726 517798 F 73 100.00 1428 reject_low 5 ALIGNMENT 0 Y12-13j07.p1k chr03 62 536 149718 149717 F 475 0.00 1428 reject_low 41 ALIGNMENT 59 Y12-13j07.p1k chr10 386 303 472621 472704 C 84 92.86 1428 reject_low 29 ALIGNMENT 0 Y12-13j07.p1k chr02 383 468 258755 259748 F 86 0.00 1428 reject_low 46 ALIGNMENT 991 Y12-13j07.q1k chr15 34 1239 699838 701066 F 1206 95.11 1268 accept_trans 0 ALIGNMENT 0 Y12-13j07.p1k chr08 62 294 116418 116417 F 233 0.00 1428 reject_low 20 ALIGNMENT 0 Y12-13j07.p1k chr12 854 606 215103 215102 C 249 0.00 1428 reject_low 13 ALIGNMENT 59 Y12-13j07.p1k chr10 386 303 483793 483876 C 84 92.86 1428 reject_low 30 ALIGNMENT 51 Y12-13j07.p1k chr12 300 386 731677 731762 F 87 89.66 1428 reject_low 34 ALIGNMENT 0 Y12-13j07.p1k chr02 312 62 259888 259887 C 251 0.00 1428 reject_low 44 ALIGNMENT 0 Y12-13j07.p1k chr01 304 62 183457 183456 C 243 0.00 1428 reject_low 35 ALIGNMENT 37 Y12-13j07.p1k chr15 531 614 703668 703751 F 84 83.33 1428 reject_low 48 ALIGNMENT 729 Y12-13j07.p1k chr15 1205 284 702836 703772 C 922 94.90 1428|0,3 accept_trans 0 ALIGNMENT 0 Y12-13j07.p1k chr10 854 387 540918 540917 C 468 0.00 1428 reject_low 18 ALIGNMENT 22 Y12-13j07.p1k chr04 507 470 1151394 1151432 C 38 89.47 1428 reject_low 39 ALIGNMENT 37 Y12-13j07.p1k chr03 382 314 149718 149786 C 69 89.86 1428 reject_low 43 ALIGNMENT 62 Y12-13j07.p1k chr08 614 469 116428 116574 C 146 82.88 1428 reject_low 15 ALIGNMENT 0 Y12-13j07.p1k chr03 124 62 149989 149988 C 63 0.00 1428 reject_low 43 ALIGNMENT 77 Y12-13j07.p1k chr05 196 119 100133 100210 C 78 100.00 1428 reject_low 4 ALIGNMENT 306 Y12-13j07.q1k chr12 777 38 612356 613095 C 740 81.22 1268 reject_low 1 ALIGNMENT 50 Y12-13j07.p1k chr10 302 388 203713 203797 F 87 89.66 1428 reject_low 32 ALIGNMENT 0 Y12-13j07.p1k chr01 387 854 165920 165919 F 468 0.00 1428 reject_low 23 ALIGNMENT 66 Y12-13j07.p1k chr02 469 605 259749 259886 F 137 84.67 1428 reject_low 46 ALIGNMENT 0 Y12-13j07.p1k chr10 389 854 203797 203796 F 466 0.00 1428 reject_low 32 ALIGNMENT 0 Y12-13j07.q1k chr12 915 778 612357 612356 C 138 0.00 1268 reject_low 1 ALIGNMENT 65 Y12-13j07.p1k chr10 299 386 354456 354543 F 88 94.32 1428 reject_low 25 ALIGNMENT 0 Y12-13j07.p1k chr10 197 854 517798 517797 F 658 0.00 1428 reject_low 5 ALIGNMENT 0 Y12-13j07.p1k chr02 294 62 226954 226953 C 233 0.00 1428 reject_low 26 ALIGNMENT 0 Y12-13j07.p1k chr10 62 302 541019 541018 F 241 0.00 1428 reject_low 40 ALIGNMENT 0 Y12-13j07.p1k chr10 854 387 472622 472621 C 468 0.00 1428 reject_low 29 ALIGNMENT 36 Y12-13j07.p1k chr15 305 388 703442 703525 F 84 83.33 1428 reject_low 48 ALIGNMENT 0 Y12-13j07.p1k chr15 62 304 703442 703441 F 243 0.00 1428 reject_low 48 ALIGNMENT 0 Y12-13j07.p1k chr02 62 468 221213 221212 F 407 0.00 1428 reject_low 14 ALIGNMENT 0 Y12-13j07.p1k chr10 505 62 354571 354570 C 444 0.00 1428 reject_low 17 ALIGNMENT 0 Y12-13j07.p1k chr16 202 854 338923 338922 F 653 0.00 1428 reject_low 3 ALIGNMENT 71 Y12-13j07.p1k chr10 469 614 483728 483874 F 146 84.93 1428 reject_low 10 ALIGNMENT 0 Y12-13j07.p1k chr02 62 468 226797 226796 F 407 0.00 1428 reject_low 8 ALIGNMENT 36 Y12-13j07.p1k chr10 303 388 541019 541103 F 86 83.72 1428 reject_low 40 ALIGNMENT 63 Y12-13j07.p1k chr08 295 386 116418 116509 F 92 92.39 1428 reject_low 20 ALIGNMENT 26 Y12-13j07.p1k chr03 537 591 149718 149772 F 55 85.45 1428 reject_low 41 ALIGNMENT 0 Y12-13j07.p1k chr01 62 294 165829 165828 F 233 0.00 1428 reject_low 23 ALIGNMENT 0 Y12-13j07.p1k chr01 387 854 160332 160331 F 468 0.00 1428 reject_low 22 ALIGNMENT 20 Y12-13j07.p1k chr10 315 344 354420 354449 F 30 93.33 1428 reject_low 42 ALIGNMENT 0 Y12-13j07.p1k chr08 301 62 133994 133993 C 240 0.00 1428 reject_low 28 ALIGNMENT 0 Y12-13j07.p1k chr01 854 387 183375 183374 C 468 0.00 1428 reject_low 35 ALIGNMENT 561 Y12-13j09.q1k chr07 707 28 193457 194133 C 680 96.32 1329 accept 0 ALIGNMENT 766 Y12-13j09.p1k chr07 17 912 188842 189727 F 896 96.76 1538 accept 0 ALIGNMENT 0 Y12-13j10.p1k chr12 345 825 490543 490542 F 481 0.00 1462 reject_low 3 ALIGNMENT 893 Y12-13j10.q1k chr12 1098 33 465812 466890 C 1066 95.68 1266 accept 0,1 ALIGNMENT 1005 Y12-13j10.p1k chr12 16 1245 452246 453475 F 1230 94.55 1462 accept 0 ALIGNMENT 318 Y12-13j10.p1k chr12 16 344 490214 490543 F 329 99.09 1462 reject_low 3 ALIGNMENT 884 Y12-13j10.q1k chr12 1034 33 456744 457753 C 1002 96.91 1266 reject_low 2 ALIGNMENT 1005 Y12-13j10.p1k chr12 16 1245 461383 462612 F 1230 94.55 1462 accept 1 ALIGNMENT 622 Y12-13j11.p1k chr09 29 782 94821 95574 F 754 95.49 1481 accept_chi 1 ALIGNMENT 744 Y12-13j11.q1k chr05 894 29 164623 165488 C 866 97.11 1323 accept_chi 0 ALIGNMENT 0 Y12-13j12.p1k chr15 430 622 29163 29162 F 193 0.00 1374 reject_low 24 ALIGNMENT 81 Y12-13j12.p1k chr15 650 804 29636 29791 F 155 85.16 1374 reject_low 1,2 ALIGNMENT 32 Y12-13j12.p1k chr09 339 429 23322 23412 F 91 79.12 1374 reject_low 22 ALIGNMENT 0 Y12-13j12.p1k chr09 430 622 23625 23624 F 193 0.00 1374 reject_low 12 ALIGNMENT 0 Y12-13j12.p1k chr09 428 622 23515 23514 F 195 0.00 1374 reject_low 7 ALIGNMENT 0 Y12-13j12.p1k chr08 622 321 543184 543183 C 302 0.00 1374 reject_low 11 ALIGNMENT 0 Y12-13j12.p1k chr15 103 125 29038 29072 F 23 0.00 1374 reject_bad_break 0 ALIGNMENT 0 Y12-13j12.p1k chr15 62 225 28948 28947 F 164 0.00 1374 reject_low 24 ALIGNMENT 136 Y12-13j12.p1k chr08 588 248 543019 543362 C 341 80.65 1374 reject_low 6 ALIGNMENT 0 Y12-13j12.p1k chr09 430 622 23412 23411 F 193 0.00 1374 reject_low 22 ALIGNMENT 54 Y12-13j12.p1k chr08 432 347 543283 543368 C 86 88.37 1374 reject_low 17 ALIGNMENT 360 Y12-13j12.p1k chr09 23 429 23324 23730 F 407 96.81 1374 reject_low 4 ALIGNMENT 48 Y12-13j12.p1k chr08 107 31 543183 543258 C 77 88.31 1374 reject_low 19 ALIGNMENT 0 Y12-13j12.p1k chr09 428 622 23836 23835 F 195 0.00 1374 reject_low 8 ALIGNMENT 71 Y12-13j12.p1k chr09 25 214 23752 23944 F 190 80.00 1374 reject_low 13 ALIGNMENT 155 Y12-13j12.p1k chr09 25 427 23431 23836 F 403 80.65 1374 reject_low 8 ALIGNMENT 0 Y12-13j12.p1k chr09 62 219 23308 23307 F 158 0.00 1374 reject_low 7 ALIGNMENT 128 Y12-13j12.p1k chr08 320 134 543183 543368 C 187 90.37 1374 reject_low 11 ALIGNMENT 0 Y12-13j12.p1k chr15 204 622 29033 29032 F 419 0.00 1374 reject_low 23 ALIGNMENT 129 Y12-13j12.p1k chr01 315 134 222576 222757 C 182 90.66 1374 reject_low 10 ALIGNMENT 668 Y12-13j12.q1k chr15 825 26 32508 33292 C 800 96.25 1503 reject_bad_break 0 ALIGNMENT 0 Y12-13j12.p1k chr15 112 622 29376 29375 F 511 0.00 1374 reject_low 21 ALIGNMENT 0 Y12-13j12.p1k chr15 325 649 29377 29635 F 325 0.00 1374 reject_low 1 ALIGNMENT 0 Y12-13j12.p1k chr09 62 338 23322 23321 F 277 0.00 1374 reject_low 22 ALIGNMENT 26 Y12-13j12.p1k chr15 157 203 28987 29033 F 47 85.11 1374 reject_low 23 ALIGNMENT 0 Y12-13j12.p1k chr01 346 62 222758 222757 C 285 0.00 1374 reject_low 16 ALIGNMENT 0 Y12-13j12.p1k chr15 103 219 29038 29058 F 117 0.00 1374 reject_low 2 ALIGNMENT 0 Y12-13j12.p1k chr01 622 433 222673 222672 C 190 0.00 1374 reject_low 16 ALIGNMENT 368 Y12-13j12.p1k chr15 126 688 29073 29635 F 563 89.52 1374 reject_bad_break 0 ALIGNMENT 0 Y12-13j12.p1k chr08 622 589 543020 543019 C 34 0.00 1374 reject_low 6 ALIGNMENT 42 Y12-13j12.p1k chr09 20 111 23854 23946 F 92 82.61 1374 reject_low 18 ALIGNMENT 0 Y12-13j12.p1k chr08 247 62 543363 543362 C 186 0.00 1374 reject_low 6 ALIGNMENT 0 Y12-13j12.p1k chr08 622 213 543184 543183 C 410 0.00 1374 reject_low 14 ALIGNMENT 0 Y12-13j12.p1k chr01 133 62 222758 222757 C 72 0.00 1374 reject_low 10 ALIGNMENT 48 Y12-13j12.p1k chr01 102 31 222576 222647 C 72 88.89 1374 reject_low 20 ALIGNMENT 0 Y12-13j12.p1k chr09 112 622 23946 23945 F 511 0.00 1374 reject_low 18 ALIGNMENT 0 Y12-13j12.p1k chr09 430 622 23730 23729 F 193 0.00 1374 reject_low 4 ALIGNMENT 39 Y12-13j12.p1k chr15 20 111 29284 29376 F 92 81.52 1374 reject_low 21 ALIGNMENT 0 Y12-13j12.p1k chr01 622 597 222401 222400 C 26 0.00 1374 reject_low 5 ALIGNMENT 0 Y12-13j12.p1k chr09 215 622 23944 23943 F 408 0.00 1374 reject_low 13 ALIGNMENT 0 Y12-13j12.p1k chr15 316 338 29038 29072 F 23 0.00 1374 reject_low 24 ALIGNMENT 162 Y12-13j12.p1k chr15 220 427 29059 29266 F 208 93.27 1374 reject_low 2 ALIGNMENT 165 Y12-13j12.p1k chr09 220 427 23308 23515 F 208 93.75 1374 reject_low 7 ALIGNMENT 0 Y12-13j12.p1k chr09 325 622 23946 23945 F 298 0.00 1374 reject_low 9 ALIGNMENT 0 Y12-13j12.p1k chr08 346 62 543369 543368 C 285 0.00 1374 reject_low 17 ALIGNMENT 0 Y12-13j12.p1k chr08 133 62 543369 543368 C 72 0.00 1374 reject_low 11 ALIGNMENT 0 Y12-13j12.p1k chr15 62 156 28987 28986 F 95 0.00 1374 reject_low 23 ALIGNMENT 0 Y12-13j12.p1k chr09 62 125 23322 23321 F 64 0.00 1374 reject_low 12 ALIGNMENT 0 Y12-13j12.p1k chr08 622 108 543184 543183 C 515 0.00 1374 reject_low 19 ALIGNMENT 54 Y12-13j12.p1k chr01 432 347 222672 222757 C 86 88.37 1374 reject_low 16 ALIGNMENT 291 Y12-13j12.p1k chr09 20 632 23533 24149 F 613 83.52 1374 reject_low 3 ALIGNMENT 137 Y12-13j12.p1k chr01 596 248 222400 222751 C 349 80.52 1374 reject_low 5 ALIGNMENT 0 Y12-13j12.p1k chr01 247 62 222752 222751 C 186 0.00 1374 reject_low 5 ALIGNMENT 69 Y12-13j12.p1k chr01 204 28 222579 222758 C 177 80.23 1374 reject_low 15 ALIGNMENT 0 Y12-13j12.p1k chr01 622 103 222577 222576 C 520 0.00 1374 reject_low 20 ALIGNMENT 249 Y12-13j12.p1k chr15 23 324 29075 29376 F 302 94.70 1374 reject_low 1 ALIGNMENT 71 Y12-13j12.p1k chr08 212 28 543183 543369 C 185 80.54 1374 reject_low 14 ALIGNMENT 0 Y12-13j12.p1k chr15 428 649 29267 29635 F 222 0.00 1374 reject_low 2 ALIGNMENT 156 Y12-13j12.p1k chr09 25 324 23644 23946 F 300 84.67 1374 reject_low 9 ALIGNMENT 35 Y12-13j12.p1k chr15 226 315 28948 29037 F 90 80.00 1374 reject_low 24 ALIGNMENT 0 Y12-13j12.p1k chr01 622 316 222577 222576 C 307 0.00 1374 reject_low 10 ALIGNMENT 0 Y12-13j12.p1k chr08 622 433 543284 543283 C 190 0.00 1374 reject_low 17 ALIGNMENT 81 Y12-13j12.p1k chr09 126 429 23322 23625 F 304 76.97 1374 reject_low 12 ALIGNMENT 34 Y12-13j12.p1k chr15 54 102 28989 29037 F 49 89.80 1374 reject_bad_break 0 reject_low 2 ALIGNMENT 0 Y12-13j12.p1k chr01 622 205 222580 222579 C 418 0.00 1374 reject_low 15 ALIGNMENT 29 Y12-13j12.p1k chr15 339 429 29073 29163 F 91 78.02 1374 reject_low 24 ALIGNMENT 987 Y12-13j13.q1k chr04 1166 32 573793 574917 C 1135 97.00 1283 accept 0 ALIGNMENT 987 Y12-13j13.p1k chr04 17 1275 570167 571413 F 1259 94.52 1458 accept 0 ALIGNMENT 919 Y12-13j14.p1k chr01 18 1156 6330 7464 F 1139 95.79 1401 accept 0 ALIGNMENT 988 Y12-13j14.q1k chr01 1203 33 7554 8722 C 1171 96.50 1274 accept 0 ALIGNMENT 594 Y12-13j17.p1k chr13 698 18 567424 568102 C 681 96.62 1559 accept 0 ALIGNMENT 539 Y12-13j17.q1k chr13 28 629 562851 563449 F 602 97.67 1395 accept 0 ALIGNMENT 0 Y12-13j18.q1k chr13 484 62 668686 668685 C 423 0.00 1312 reject_low 2 ALIGNMENT 394 Y12-13j18.q1k chr15 30 484 775339 775796 F 455 97.58 1312 accept_chi 1 ALIGNMENT 710 Y12-13j18.p1k chr04 795 25 1403336 1404106 C 771 97.80 1487 accept_chi 0 ALIGNMENT 150 Y12-13j18.q1k chr13 849 485 668322 668685 C 365 80.82 1312 reject_low 2 ALIGNMENT 784 Y12-13j19.p1k chr11 23 856 454047 454878 F 834 98.56 1423 accept 0 ALIGNMENT 561 Y12-13j19.q1k chr11 631 36 456626 457221 C 596 98.83 1267 accept 0 ALIGNMENT 487 Y12-13j20.p1k chr13 14 639 436342 436966 F 626 93.61 1422 accept 0 ALIGNMENT 240 Y12-13j20.q1k chr13 365 29 441086 441416 C 337 92.28 1405 accept 0 ALIGNMENT 973 Y12-13j21.q1k chr04 39 1122 1231511 1232598 F 1084 97.51 1126 accept 0 ALIGNMENT 955 Y12-13j21.p1k chr04 1150 19 1235214 1236362 C 1132 96.20 1327 accept 0 ALIGNMENT 882 Y12-13j22.q1k chr16 1059 34 770302 771311 C 1026 97.37 1141 accept 0 ALIGNMENT 784 Y12-13j22.p1k chr16 274 1168 766198 767105 F 895 96.87 1384 accept 0 ALIGNMENT 1028 Y12-13j23.p1k chr06 18 1262 70451 71696 F 1245 95.18 1316 accept 0 ALIGNMENT 900 Y12-13j24.p1k chr11 1320 16 213068 214351 C 1305 91.80 1323 accept 0 ALIGNMENT 0 Y12-13k01.q1k chr10 62 437 153422 153421 F 376 0.00 1211 reject_low 1 ALIGNMENT 587 Y12-13k01.q1k chr10 438 1192 153422 154161 F 755 94.57 1211 reject_low 1 ALIGNMENT 968 Y12-13k01.q1k chr11 1192 34 555077 556219 C 1159 96.46 1211 accept 0 ALIGNMENT 0 Y12-13k01.p1k chr10 869 626 156469 156468 C 244 0.00 1316 reject_low 1 ALIGNMENT 1003 Y12-13k01.p1k chr11 21 1184 551279 552449 F 1164 96.82 1316 accept 0 ALIGNMENT 0 Y12-13k01.p1k chr10 383 62 156710 156709 C 322 0.00 1316 reject_low 1 ALIGNMENT 172 Y12-13k01.p1k chr10 625 384 156468 156709 C 242 90.50 1316 reject_low 1 ALIGNMENT 1017 Y12-13k03.p1k chr12 21 1150 282987 284132 F 1130 97.17 1342 accept 0 ALIGNMENT 992 Y12-13k03.q1k chr12 1240 27 287515 288722 C 1214 95.63 1245 accept 0 ALIGNMENT 927 Y12-13k05.p1k chr12 1181 17 780082 781255 C 1165 94.42 1418 accept 0 ALIGNMENT 936 Y12-13k06.p1k chr07 1093 20 107578 108659 C 1074 96.93 1371 accept 0 ALIGNMENT 995 Y12-13k06.q1k chr07 34 1185 103887 105066 F 1152 97.40 1216 accept 0 ALIGNMENT 870 Y12-13k07.p1k chr12 1042 22 452564 453601 C 1021 95.89 1405 accept 0 ALIGNMENT 715 Y12-13k07.q1k chr12 114 893 489754 490533 F 780 97.56 1291 reject_low 2 ALIGNMENT 0 Y12-13k07.q1k chr12 62 113 489754 489753 F 52 0.00 1291 reject_low 2 ALIGNMENT 812 Y12-13k07.q1k chr12 33 915 451704 452584 F 883 97.96 1291 accept 0 ALIGNMENT 870 Y12-13k07.p1k chr12 1042 22 461701 462738 C 1021 95.89 1405 accept 1 ALIGNMENT 812 Y12-13k07.q1k chr12 33 915 460841 461721 F 883 97.96 1291 accept 1 ALIGNMENT 875 Y12-13k08.p1k chr13 1063 13 307435 308501 C 1051 95.81 1385 accept 0 ALIGNMENT 752 Y12-13k08.q1k chr13 31 860 303645 304471 F 830 97.83 1222 accept 0 ALIGNMENT 126 Y12-13k09.p1k chr07 476 330 287352 287498 C 147 95.92 1391 reject_low 1 ALIGNMENT 0 Y12-13k09.p1k chr11 62 354 302551 302550 F 293 0.00 1391 reject_low 3 ALIGNMENT 0 Y12-13k09.p1k chr16 847 480 56163 56162 C 368 0.00 1391 reject_low 5 ALIGNMENT 0 Y12-13k09.p1k chr11 477 847 302672 302671 F 371 0.00 1391 reject_low 3 ALIGNMENT 114 Y12-13k09.p1k chr11 355 476 302551 302672 F 122 98.36 1391 reject_low 3 ALIGNMENT 0 Y12-13k09.p1k chr07 329 62 287499 287498 C 268 0.00 1391 reject_low 1 ALIGNMENT 0 Y12-13k09.p1k chr10 847 494 415826 415825 C 354 0.00 1391 reject_low 2 ALIGNMENT 0 Y12-13k09.p1k chr07 847 477 287353 287352 C 371 0.00 1391 reject_low 1 ALIGNMENT 1017 Y12-13k09.q1k chr07 37 1221 873541 874736 F 1185 96.46 1229 accept 0 ALIGNMENT 109 Y12-13k09.p1k chr10 493 362 415825 415956 C 132 95.45 1391 reject_low 2 ALIGNMENT 0 Y12-13k09.p1k chr13 361 62 379413 379412 C 300 0.00 1391 reject_low 4 ALIGNMENT 103 Y12-13k09.p1k chr16 479 366 56162 56275 C 114 97.37 1391 reject_low 5 ALIGNMENT 0 Y12-13k09.p1k chr10 361 62 415957 415956 C 300 0.00 1391 reject_low 2 ALIGNMENT 977 Y12-13k09.p1k chr07 1146 24 878025 879163 C 1123 97.06 1391 accept 0 ALIGNMENT 0 Y12-13k09.p1k chr16 365 62 56276 56275 C 304 0.00 1391 reject_low 5 ALIGNMENT 0 Y12-13k09.p1k chr13 847 480 379296 379295 C 368 0.00 1391 reject_low 4 ALIGNMENT 107 Y12-13k09.p1k chr13 479 362 379295 379412 C 118 97.46 1391 reject_low 4 ALIGNMENT 922 Y12-13k10.p1k chr13 1100 14 135512 136606 C 1087 96.41 1378 accept 0 ALIGNMENT 1001 Y12-13k10.q1k chr13 30 1252 130317 131537 F 1223 95.42 1255 accept 0 ALIGNMENT 585 Y12-13k11.q1k chr10 35 659 376205 376829 F 625 99.36 1350 accept 0 ALIGNMENT 920 Y12-13k11.p1k chr10 1075 25 379374 380438 C 1051 97.62 1345 accept 0 ALIGNMENT 975 Y12-13k12.p1k chr09 1178 17 348529 349696 C 1162 95.61 1416 accept 0 ALIGNMENT 1038 Y12-13k12.q1k chr09 32 1240 346955 348169 F 1209 96.86 1246 accept 0 ALIGNMENT 979 Y12-13k14.q1k chr13 1220 35 866535 867712 C 1186 95.45 1261 accept 0 ALIGNMENT 1033 Y12-13k14.p1k chr13 19 1262 862395 863647 F 1244 94.94 1414 accept 0 ALIGNMENT 927 Y12-13k15.q1k chrm 1211 34 17563 18745 C 1178 96.94 1213 accept 0 ALIGNMENT 678 Y12-13k15.p1k chrm 15 1130 13383 14495 F 1116 92.74 1363 accept 0 ALIGNMENT 36 Y12-13k15.p1k chrm 297 245 56255 56309 C 53 90.57 1363 reject_low 1 ALIGNMENT 0 Y12-13k15.p1k chrm 62 255 53229 53228 F 194 0.00 1363 reject_low 2 ALIGNMENT 0 Y12-13k15.p1k chrm 296 826 53267 53266 F 531 0.00 1363 reject_low 2 ALIGNMENT 0 Y12-13k15.p1k chrm 244 62 56310 56309 C 183 0.00 1363 reject_low 1 ALIGNMENT 0 Y12-13k15.p1k chrm 826 298 56256 56255 C 529 0.00 1363 reject_low 1 ALIGNMENT 0 Y12-13k15.p1k chrm 297 826 67037 67036 F 530 0.00 1363 reject_low 3 ALIGNMENT 26 Y12-13k15.p1k chrm 256 296 66998 67037 F 41 92.68 1363 reject_low 3 ALIGNMENT 0 Y12-13k15.p1k chrm 62 255 66998 66997 F 194 0.00 1363 reject_low 3 ALIGNMENT 28 Y12-13k15.p1k chrm 256 295 53229 53267 F 40 95.00 1363 reject_low 2 ALIGNMENT 1023 Y12-13k16.p1k chr14 17 1252 223305 224563 F 1236 96.20 1382 accept 0 ALIGNMENT 1068 Y12-13k16.q1k chr14 1235 33 226697 227902 C 1203 97.01 1239 accept 0 ALIGNMENT 663 Y12-13k17.q1k chr11 724 33 57532 58223 C 692 99.13 1274 accept 0 ALIGNMENT 841 Y12-13k17.p1k chr11 35 1012 53234 54210 F 978 96.93 1436 accept 0 ALIGNMENT 1044 Y12-13k18.p1k chr11 1288 27 420455 421719 C 1262 95.80 1398 accept 0 ALIGNMENT 1035 Y12-13k18.q1k chr11 36 1217 417399 418592 F 1182 96.70 1251 accept 0 ALIGNMENT 267 Y12-13k19.q1k chr04 34 427 1283865 1284256 F 394 91.37 1278 accept 0 ALIGNMENT 635 Y12-13k19.p1k chr04 771 24 1287773 1288520 C 748 95.59 1456 accept 0 ALIGNMENT 930 Y12-13k21.p1k chr16 20 1070 299735 300778 F 1051 97.05 1335 accept 0 ALIGNMENT 748 Y12-13k21.q1k chr16 851 35 303423 304236 C 817 97.80 1230 accept 0 ALIGNMENT 1002 Y12-13k22.p1k chr04 1161 17 1011538 1012698 C 1145 96.86 1314 accept 0 ALIGNMENT 1028 Y12-13k22.q1k chr04 34 1203 1007571 1008733 F 1170 96.92 1204 accept 0 ALIGNMENT 988 Y12-13k23.q1k chr07 1121 38 513820 514908 C 1084 98.15 1122 accept 0 ALIGNMENT 1042 Y12-13k23.p1k chr07 16 1240 508942 510170 F 1225 96.73 1309 accept 0 ALIGNMENT 998 Y12-13l01.p1k chr15 1240 25 374772 375987 C 1216 94.98 1369 accept 0 ALIGNMENT 874 Y12-13l01.q1k chr15 31 1054 370621 371630 F 1024 97.07 1245 accept 0 ALIGNMENT 965 Y12-13l03.q1k chr11 1107 34 572556 573620 C 1074 97.58 1285 accept_chi 1 ALIGNMENT 1008 Y12-13l03.p1k chr16 1242 18 427729 428952 C 1225 95.51 1422 accept_chi 0 ALIGNMENT 955 Y12-13l04.p1k chr12 18 1094 297072 298164 F 1077 97.68 1375 accept 0 ALIGNMENT 1033 Y12-13l04.q1k chr12 1242 23 300341 301562 C 1220 95.66 1251 accept 0 ALIGNMENT 1003 Y12-13l06.p1k chr08 18 1177 226581 227751 F 1160 96.55 1387 accept_chi 0 ALIGNMENT 845 Y12-13l06.q1k chr12 31 996 463665 464629 F 966 96.69 1273 manual 2 ALIGNMENT 848 Y12-13l06.q1k chr12 31 1102 454528 455594 F 1072 94.22 1273 manual 1 ALIGNMENT 993 Y12-13l08.q1k chr07 1151 35 698671 699786 C 1117 97.49 1162 accept 0 ALIGNMENT 927 Y12-13l08.p1k chr07 21 1087 695635 696714 F 1067 96.81 1371 accept 0 ALIGNMENT 1035 Y12-13l09.p1k chr11 1245 20 116244 117496 C 1226 96.00 1419 accept 0 ALIGNMENT 1017 Y12-13l09.q1k chr11 34 1231 114797 115998 F 1198 96.33 1253 accept 0 ALIGNMENT 950 Y12-13l10.p1k chr04 1182 18 613638 614809 C 1165 94.68 1439 accept 0 ALIGNMENT 1017 Y12-13l10.q1k chr04 35 1211 609304 610480 F 1177 96.35 1261 accept 0 ALIGNMENT 0 Y12-13l11.q1k chrm 822 637 34225 34224 C 186 0.00 1243 reject_low 7 ALIGNMENT 0 Y12-13l11.q1k chrm 86 62 44774 44773 C 25 0.00 1243 accept 0 ALIGNMENT 0 Y12-13l11.q1k chrm 867 669 48154 55489 C 199 0.00 1243 reject_low 10 ALIGNMENT 33 Y12-13l11.p1k chr01 361 423 189210 189271 F 63 93.65 1430 reject_low 2 ALIGNMENT 34 Y12-13l11.q1k chrm 930 878 34277 34329 C 53 88.68 1243 reject_low 5 ALIGNMENT 0 Y12-13l11.p1k chr07 531 774 404936 404935 F 244 0.00 1430 reject_low 3 ALIGNMENT 0 Y12-13l11.q1k chrm 610 62 55548 55547 C 549 0.00 1243 reject_low 10 ALIGNMENT 30 Y12-13l11.q1k chrm 878 922 12268 12312 F 45 91.11 1243 reject_low 6 ALIGNMENT 68 Y12-13l11.p1k chr01 449 530 189267 189349 F 82 98.78 1430 reject_low 2 ALIGNMENT 0 Y12-13l11.q1k chrm 877 62 34330 34329 C 816 0.00 1243 reject_low 5 ALIGNMENT 0 Y12-13l11.p1k chr01 62 360 189210 189209 F 299 0.00 1430 reject_low 2 ALIGNMENT 0 Y12-13l11.q1k chrm 637 822 68630 68629 F 186 0.00 1243 reject_low 8 ALIGNMENT 24 Y12-13l11.q1k chrm 609 636 68603 68630 F 28 100.00 1243 reject_low 8 ALIGNMENT 39 Y12-13l11.q1k chrm 924 863 46311 46371 C 62 88.71 1243 reject_low 11 ALIGNMENT 0 Y12-13l11.q1k chrm 608 62 34252 34251 C 547 0.00 1243 reject_low 7 ALIGNMENT 0 Y12-13l11.p1k chr07 62 360 404797 404796 F 299 0.00 1430 reject_low 3 ALIGNMENT 0 Y12-13l11.q1k chrm 862 681 46372 47937 C 182 0.00 1243 reject_low 11 ALIGNMENT 0 Y12-13l11.q1k chrm 62 638 57299 57298 F 577 0.00 1243 reject_low 9 ALIGNMENT 0 Y12-13l11.q1k chrm 62 608 68603 68602 F 547 0.00 1243 reject_low 8 ALIGNMENT 0 Y12-13l11.q1k chrm 621 622 47997 53745 C 0 0.00 1243 reject_low 11 ALIGNMENT 21 Y12-13l11.p1k chrm 286 259 11534 11561 C 28 96.43 1430 reject_low 4 ALIGNMENT 0 Y12-13l11.p1k chr07 424 448 404859 404853 F 25 0.00 1430 reject_low 3 ALIGNMENT 24 Y12-13l11.q1k chrm 636 609 34224 34251 C 28 100.00 1243 reject_low 7 ALIGNMENT 0 Y12-13l11.p1k chrm 62 720 43139 43138 F 659 0.00 1430 reject_low 1 ALIGNMENT 40 Y12-13l11.q1k chrm 924 868 48098 48153 C 57 91.23 1243 reject_low 10 ALIGNMENT 20 Y12-13l11.q1k chrm 631 610 53736 53757 C 22 100.00 1243|10,0 reject_low 11 ALIGNMENT 221 Y12-13l11.p1k chrm 721 1085 43139 43503 F 365 91.78 1430 accept 0 reject_low 1 ALIGNMENT 47 Y12-13l11.q1k chrm 668 611 55490 55547 C 58 96.55 1243 reject_low 10 ALIGNMENT 0 Y12-13l11.p1k chrm 720 720 43098 43138 F 1 0.00 1430 accept 0 ALIGNMENT 461 Y12-13l11.q1k chrm 1091 176 43807 44684 C 916 90.72 1243 reject_low 1 ALIGNMENT 0 Y12-13l11.p1k chr01 531 774 189349 189348 F 244 0.00 1430 reject_low 2 ALIGNMENT 30 Y12-13l11.p1k chr07 361 423 404797 404858 F 63 92.06 1430 reject_low 3 ALIGNMENT 475 Y12-13l11.q1k chrm 901 87 43998 44773 C 815 93.01 1243 accept 0 ALIGNMENT 0 Y12-13l11.q1k chrm 62 877 12268 12267 F 816 0.00 1243 reject_low 6 ALIGNMENT 0 Y12-13l11.p1k chrm 258 62 11562 11561 C 197 0.00 1430 reject_low 4 ALIGNMENT 0 Y12-13l11.p1k chrm 774 287 11535 11534 C 488 0.00 1430 reject_low 4 ALIGNMENT 61 Y12-13l11.q1k chrm 680 611 47938 48007 C 70 95.71 1243|0,11 reject_low 11 ALIGNMENT 68 Y12-13l11.p1k chr07 449 530 404854 404936 F 82 98.78 1430 reject_low 3 ALIGNMENT 21 Y12-13l11.q1k chrm 639 664 57299 57325 F 26 96.15 1243 reject_low 9 ALIGNMENT 0 Y12-13l11.q1k chrm 609 62 53758 53757 C 548 0.00 1243 reject_low 11 ALIGNMENT 0 Y12-13l11.p1k chr01 424 448 189272 189266 F 25 0.00 1430 reject_low 2 ALIGNMENT 540 Y12-13l11.p1k chrm 20 719 42403 43097 F 700 98.86 1430 accept 0 ALIGNMENT 0 Y12-13l11.q1k chrm 665 822 57325 57324 F 158 0.00 1243 reject_low 9 ALIGNMENT 0 Y12-13l11.q1k chrm 175 62 44685 44684 C 114 0.00 1243 reject_low 1 ALIGNMENT 1025 Y12-13l12.p1k chr16 20 1197 548664 549845 F 1178 96.60 1434 accept_chi 0 ALIGNMENT 1022 Y12-13l12.q1k chr05 1230 32 279375 280583 C 1199 96.08 1235 accept_chi 1 ALIGNMENT 788 Y12-13l13.q1k chr12 943 35 644293 645197 C 909 97.14 1296 accept 0 ALIGNMENT 0 Y12-13l13.p1k chr14 645 762 609116 609115 F 118 0.00 1407 reject_low 1 ALIGNMENT 903 Y12-13l13.p1k chr12 19 1045 638953 639985 F 1027 96.69 1407 accept 0 ALIGNMENT 294 Y12-13l13.p1k chr14 28 644 608501 609116 F 617 82.98 1407 reject_low 1 ALIGNMENT 1012 Y12-13l14.q1k chr11 34 1202 480603 481778 F 1169 96.32 1243 accept 0 ALIGNMENT 978 Y12-13l14.p1k chr11 1140 23 484428 485559 C 1118 97.23 1370 accept 0 ALIGNMENT 1046 Y12-13l15.q1k chr07 1195 37 313201 314360 C 1159 97.58 1208 accept 0 ALIGNMENT 984 Y12-13l15.p1k chr07 19 1296 310249 311523 F 1278 94.29 1438 accept 0 ALIGNMENT 1057 Y12-13l16.q1k chr16 1219 34 394182 395363 C 1186 97.72 1219 accept 0 ALIGNMENT 1039 Y12-13l16.p1k chr16 21 1269 389914 391172 F 1249 95.84 1402 accept 0 ALIGNMENT 1044 Y12-13l17.p1k chr14 1189 21 217258 218439 C 1169 97.35 1369 accept 0 ALIGNMENT 1063 Y12-13l17.q1k chr14 37 1238 214181 215389 F 1202 97.34 1259 accept 0 ALIGNMENT 1029 Y12-13l18.p1k chr13 1192 17 903466 904655 C 1176 96.85 1368 accept 0 ALIGNMENT 1089 Y12-13l18.q1k chr13 36 1256 899101 900319 F 1221 97.22 1258 accept 0 ALIGNMENT 0 Y12-13l19.p1k chr07 62 574 530029 530028 F 513 0.00 1362 reject_low 1 ALIGNMENT 0 Y12-13l19.p1k chr07 603 864 530056 530055 F 262 0.00 1362 reject_low 1 ALIGNMENT 22 Y12-13l19.p1k chr07 575 602 530029 530056 F 28 100.00 1362 reject_low 1 ALIGNMENT 1023 Y12-13l19.q1k chr12 1229 36 866263 867460 C 1194 96.65 1233 accept 0 ALIGNMENT 1035 Y12-13l19.p1k chr12 18 1203 863135 864332 F 1186 96.54 1362 accept 0 ALIGNMENT 860 Y12-13l20.p1k chr03 1014 19 276568 277578 C 996 97.09 1304 accept 0 ALIGNMENT 937 Y12-13l20.q1k chr03 36 1198 273223 274388 F 1163 95.10 1232 accept 0 ALIGNMENT 1003 Y12-13l21.q1k chr04 1165 34 414888 416015 C 1132 97.61 1165 accept 0 ALIGNMENT 992 Y12-13l21.p1k chr04 16 1163 410790 411940 F 1148 96.34 1338 accept 0 ALIGNMENT 1006 Y12-13l22.q1k chr12 39 1158 524416 525538 F 1120 97.05 1158 accept 0 ALIGNMENT 923 Y12-13l22.p1k chr12 1024 23 528926 529941 C 1002 98.20 1285 accept 0 ALIGNMENT 853 Y12-13l23.p1k chr16 16 1070 95552 96597 F 1055 95.55 1429 accept 0 ALIGNMENT 888 Y12-13l23.q1k chr16 1025 37 98654 99635 C 989 98.18 1025 accept 0 ALIGNMENT 943 Y12-13l24.p1k chr06 1197 15 31443 32636 C 1183 94.42 1316 accept 0 ALIGNMENT 0 Y12-13l24.p1k chr12 62 917 459308 459307 F 856 0.00 1316 reject_low 1 ALIGNMENT 59 Y12-13l24.p1k chr12 918 1024 459308 459415 F 107 86.92 1316 reject_low 1 ALIGNMENT 882 Y12-13l24.q1k chr06 36 991 27809 28755 F 956 98.54 1022 accept 0 ALIGNMENT 67 Y12-13m01.q1k chr16 927 1018 560195 560287 F 92 92.39 1246 reject_low 5 ALIGNMENT 0 Y12-13m01.q1k chr06 62 926 157910 157909 F 865 0.00 1246 reject_low 1 ALIGNMENT 0 Y12-13m01.q1k chr13 926 62 352370 352369 C 865 0.00 1246 reject_low 3 ALIGNMENT 0 Y12-13m01.q1k chr16 62 926 560195 560194 F 865 0.00 1246 reject_low 5 ALIGNMENT 68 Y12-13m01.q1k chr04 923 1018 1095361 1095457 F 96 91.67 1246 reject_low 2 ALIGNMENT 991 Y12-13m01.q1k chr14 1172 28 374717 375861 C 1145 96.94 1246 accept 0 ALIGNMENT 68 Y12-13m01.q1k chr13 1021 927 352275 352369 C 95 91.58 1246 reject_low 3 ALIGNMENT 72 Y12-13m01.q1k chr06 927 1032 157910 158016 F 106 90.57 1246 reject_low 1 ALIGNMENT 67 Y12-13m01.q1k chr16 927 1021 622537 622632 F 95 91.58 1246 reject_low 4 ALIGNMENT 0 Y12-13m01.q1k chr16 62 926 622537 622536 F 865 0.00 1246 reject_low 4 ALIGNMENT 837 Y12-13m01.p1k chr14 13 1052 371919 372953 F 1040 94.90 1392 accept 0 ALIGNMENT 0 Y12-13m01.q1k chr04 62 922 1095361 1095360 F 861 0.00 1246 reject_low 2 ALIGNMENT 80 Y12-13m02.p1k chr11 937 1162 517089 517316 F 226 80.53 1340 reject_low 1 ALIGNMENT 0 Y12-13m02.p1k chr11 62 936 517089 517088 F 875 0.00 1340 reject_low 1 ALIGNMENT 63 Y12-13m02.p1k chr03 1103 942 82873 83036 C 162 81.48 1340 reject_low 5 ALIGNMENT 80 Y12-13m02.p1k chr13 941 1162 357002 357225 F 222 80.63 1340 reject_low 2 ALIGNMENT 0 Y12-13m02.p1k chr03 62 941 83053 83052 F 880 0.00 1340 reject_low 6 ALIGNMENT 67 Y12-13m02.p1k chr02 1162 943 221150 221373 C 220 79.09 1340 reject_low 4 ALIGNMENT 0 Y12-13m02.p1k chr13 62 940 357002 357001 F 879 0.00 1340 reject_low 2 ALIGNMENT 0 Y12-13m02.p1k chr03 941 62 83037 83036 C 880 0.00 1340 reject_low 5 ALIGNMENT 0 Y12-13m02.p1k chr02 942 62 221374 221373 C 881 0.00 1340 reject_low 4 ALIGNMENT 1018 Y12-13m02.q1k chr07 38 1175 1057722 1058874 F 1138 97.10 1244 accept 0 ALIGNMENT 77 Y12-13m02.p1k chr07 1162 941 535325 535548 C 222 80.18 1340 reject_low 3 ALIGNMENT 859 Y12-13m02.p1k chr07 942 16 1060380 1061309 C 927 99.14 1340 accept 0 ALIGNMENT 0 Y12-13m02.p1k chr07 940 62 535549 535548 C 879 0.00 1340 reject_low 3 ALIGNMENT 36 Y12-13m02.p1k chr03 942 1077 83053 83191 F 136 77.94 1340 reject_low 6 ALIGNMENT 230 Y12-13m03.p1k chr02 323 941 631354 631950 F 619 82.07 1421 reject_bad_break 0 ALIGNMENT 0 Y12-13m03.q1k chr02 204 133 635407 635461 C 72 0.00 1346 reject_bad_break 0 ALIGNMENT 20 Y12-13m03.q1k chr02 132 100 635462 635492 C 33 90.91 1346 reject_bad_break 0 ALIGNMENT 477 Y12-13m03.q1k chr02 1003 205 634612 635406 C 799 87.36 1346 reject_bad_break 0 ALIGNMENT 900 Y12-13m04.p1k chr07 20 1068 689767 690829 F 1049 96.57 1316 accept 0 ALIGNMENT 1044 Y12-13m04.q1k chr07 1250 32 693800 695024 C 1219 96.23 1285 accept 0 ALIGNMENT 982 Y12-13m05.p1k chr09 1164 27 348889 350037 C 1138 96.22 1386 accept 0 ALIGNMENT 967 Y12-13m05.q1k chr09 33 1177 346717 347862 F 1145 96.51 1267 accept 0 ALIGNMENT 1058 Y12-13m06.q1k chr04 1261 34 1506566 1507795 C 1228 95.77 1264 reject_bad_break 0 ALIGNMENT 0 Y12-13m06.p1k chr04 62 1046 1503856 1503855 F 985 0.00 1386 reject_low 1 ALIGNMENT 0 Y12-13m06.p1k chr04 995 1046 1503809 1503927 F 52 0.00 1386 reject_bad_break 0 ALIGNMENT 26 Y12-13m06.p1k chr04 1047 1080 1503928 1503962 F 34 94.12 1386 reject_bad_break 0 ALIGNMENT 922 Y12-13m06.p1k chr04 22 994 1502835 1503808 F 973 99.08 1386 reject_bad_break 0 ALIGNMENT 23 Y12-13m06.p1k chr04 1047 1080 1503856 1503890 F 34 91.18 1386 reject_low 1 ALIGNMENT 1056 Y12-13m07.p1k chr12 1228 15 418770 419983 C 1214 96.54 1446 accept 0 ALIGNMENT 974 Y12-13m07.q1k chr12 32 1230 414070 415264 F 1199 95.08 1259 accept 0 ALIGNMENT 270 Y12-13m08.p1k chr12 53 1027 638582 639557 F 975 77.03 1395 reject_low 1 ALIGNMENT 884 Y12-13m08.p1k chr14 26 1147 608094 609220 F 1122 94.03 1395 accept 0 ALIGNMENT 916 Y12-13m08.q1k chr14 1057 31 612380 613399 C 1027 97.76 1298 accept 0 ALIGNMENT 36 Y12-13m09.q1k chr16 73 34 794957 794996 C 40 97.50 1246 reject_low 1 ALIGNMENT 0 Y12-13m09.q1k chr16 852 74 794958 794957 C 779 0.00 1246 reject_low 1 ALIGNMENT 1001 Y12-13m09.p1k chr07 24 1203 723095 724288 F 1180 96.10 1404 accept 0 ALIGNMENT 967 Y12-13m09.q1k chr07 1161 34 725888 727013 C 1128 96.37 1246 accept 0 ALIGNMENT 938 Y12-13m11.q1k chr08 35 1191 269256 270440 F 1157 95.59 1192 accept 0 ALIGNMENT 951 Y12-13m11.p1k chr08 1135 26 272026 273150 C 1110 95.41 1378 accept 0 ALIGNMENT 1012 Y12-13m12.p1k chr12 20 1174 230208 231369 F 1155 96.80 1400 accept_chi 1 ALIGNMENT 1032 Y12-13m12.q1k chr04 1221 26 962152 963348 C 1196 96.40 1223 accept_chi 0 ALIGNMENT 1001 Y12-13m13.q1k chr16 1150 33 380515 381625 C 1118 97.85 1232 accept 0 ALIGNMENT 988 Y12-13m13.p1k chr16 18 1142 376212 377342 F 1125 96.98 1364 accept 0 ALIGNMENT 353 Y12-13m14.p1k chr11 1035 27 169969 170978 C 1009 78.79 1363 reject_low 1 ALIGNMENT 1004 Y12-13m14.p1k chr10 26 1146 356077 357211 F 1121 97.23 1363 accept 0 ALIGNMENT 1061 Y12-13m14.q1k chr10 1243 39 359794 360989 C 1205 96.60 1246 accept 0 ALIGNMENT 1005 Y12-13m15.q1k chr16 1193 30 365555 366737 C 1164 96.91 1241 accept 0 ALIGNMENT 1050 Y12-13m15.p1k chr16 26 1294 361834 363102 F 1269 95.59 1447 accept 0 ALIGNMENT 977 Y12-13m16.p1k chr09 16 1185 358884 360069 F 1170 95.98 1403 accept 0 ALIGNMENT 1023 Y12-13m16.q1k chr09 1262 35 362053 363283 C 1228 95.44 1298 accept 0 ALIGNMENT 970 Y12-13m18.p1k chr04 29 1153 793140 794279 F 1125 96.44 1351 accept 0 ALIGNMENT 1077 Y12-13m18.q1k chr04 1244 28 796130 797345 C 1217 97.29 1244 accept 0 ALIGNMENT 0 Y12-13m19.p1k chr13 148 898 588644 588643 F 751 0.00 1348 reject_low 1 ALIGNMENT 0 Y12-13m19.p1k chr14 109 62 579987 579986 C 48 0.00 1348 reject_low 3 ALIGNMENT 0 Y12-13m19.p1k chr07 107 62 158896 158895 C 46 0.00 1348 reject_low 2 ALIGNMENT 0 Y12-13m19.p1k chr07 898 132 158873 158872 C 767 0.00 1348 reject_low 2 ALIGNMENT 940 Y12-13m19.q1k chr10 36 1096 580261 581333 F 1061 97.27 1202 accept 0 ALIGNMENT 20 Y12-13m19.p1k chr14 149 110 579947 579986 C 40 87.50 1348 reject_low 3 ALIGNMENT 22 Y12-13m19.p1k chr13 110 147 588607 588644 F 38 92.11 1348 reject_low 1 ALIGNMENT 1027 Y12-13m19.p1k chr10 1193 26 584949 586133 C 1168 97.26 1348 accept 0 ALIGNMENT 0 Y12-13m19.p1k chr14 898 150 579948 579947 C 749 0.00 1348 reject_low 3 ALIGNMENT 22 Y12-13m19.p1k chr07 131 108 158872 158895 C 24 100.00 1348 reject_low 2 ALIGNMENT 0 Y12-13m19.p1k chr13 62 109 588607 588606 F 48 0.00 1348 reject_low 1 ALIGNMENT 0 Y12-13m20.q1k chr07 303 62 876485 876484 C 242 0.00 1253 reject_low 4 ALIGNMENT 0 Y12-13m20.q1k chr05 62 317 435748 435747 F 256 0.00 1253 reject_low 12 ALIGNMENT 0 Y12-13m20.q1k chr11 961 392 202645 202644 C 570 0.00 1253 reject_low 13 ALIGNMENT 0 Y12-13m20.q1k chr04 961 393 1201739 1201738 C 569 0.00 1253 reject_low 7 ALIGNMENT 0 Y12-13m20.q1k chr09 62 316 300226 300225 F 255 0.00 1253 reject_low 5 ALIGNMENT 0 Y12-13m20.q1k chr04 313 62 1201817 1201816 C 252 0.00 1253 reject_low 7 ALIGNMENT 0 Y12-13m20.q1k chr16 317 62 582132 582131 C 256 0.00 1253 reject_low 6 ALIGNMENT 0 Y12-13m20.q1k chr13 393 961 480694 480693 F 569 0.00 1253 reject_low 9 ALIGNMENT 74 Y12-13m20.q1k chr05 318 391 435748 435821 F 74 100.00 1253 reject_low 12 ALIGNMENT 0 Y12-13m20.q1k chr05 392 961 435821 435820 F 570 0.00 1253 reject_low 12 ALIGNMENT 1032 Y12-13m20.q1k chr10 1253 33 414014 415238 C 1221 96.40 1253 accept 0 ALIGNMENT 0 Y12-13m20.q1k chr09 406 961 300313 300312 F 556 0.00 1253 reject_low 5 ALIGNMENT 0 Y12-13m20.q1k chr13 62 317 480620 480619 F 256 0.00 1253 reject_low 9 ALIGNMENT 0 Y12-13m20.q1k chr07 62 307 185711 185710 F 246 0.00 1253 reject_low 1 ALIGNMENT 84 Y12-13m20.q1k chr04 307 405 1352446 1352543 F 99 95.96 1253 reject_low 3 ALIGNMENT 0 Y12-13m20.q1k chr07 306 62 122357 122356 C 245 0.00 1253 reject_low 2 ALIGNMENT 0 Y12-13m20.q1k chr03 392 961 151354 151353 F 570 0.00 1253 reject_low 10 ALIGNMENT 79 Y12-13m20.q1k chr04 392 314 1201738 1201816 C 79 100.00 1253 reject_low 7 ALIGNMENT 0 Y12-13m20.q1k chr05 392 961 135498 135497 F 570 0.00 1253 reject_low 11 ALIGNMENT 0 Y12-13m20.q1k chr07 961 393 876398 876397 C 569 0.00 1253 reject_low 4 ALIGNMENT 1084 Y12-13m20.p1k chr10 20 1298 410757 412040 F 1279 96.01 1395 accept 0 ALIGNMENT 0 Y12-13m20.q1k chr06 62 306 226665 226664 F 245 0.00 1253 reject_low 8 ALIGNMENT 0 Y12-13m20.q1k chr03 62 317 151281 151280 F 256 0.00 1253 reject_low 10 ALIGNMENT 0 Y12-13m20.q1k chr07 407 961 185808 185807 F 555 0.00 1253 reject_low 1 ALIGNMENT 78 Y12-13m20.q1k chr09 317 405 300226 300313 F 89 96.63 1253 reject_low 5 ALIGNMENT 77 Y12-13m20.q1k chr07 392 304 876397 876484 C 89 96.63 1253 reject_low 4 ALIGNMENT 0 Y12-13m20.q1k chr04 62 306 1352446 1352445 F 245 0.00 1253 reject_low 3 ALIGNMENT 74 Y12-13m20.q1k chr05 318 391 135425 135498 F 74 100.00 1253 reject_low 11 ALIGNMENT 75 Y12-13m20.q1k chr13 318 392 480620 480694 F 75 100.00 1253 reject_low 9 ALIGNMENT 0 Y12-13m20.q1k chr07 961 406 122259 122258 C 556 0.00 1253 reject_low 2 ALIGNMENT 87 Y12-13m20.q1k chr07 308 406 185711 185808 F 99 96.97 1253 reject_low 1 ALIGNMENT 89 Y12-13m20.q1k chr07 405 307 122258 122356 C 99 96.97 1253 reject_low 2 ALIGNMENT 0 Y12-13m20.q1k chr16 961 404 582047 582046 C 558 0.00 1253 reject_low 6 ALIGNMENT 74 Y12-13m20.q1k chr11 391 318 202644 202717 C 74 100.00 1253 reject_low 13 ALIGNMENT 74 Y12-13m20.q1k chr03 318 391 151281 151354 F 74 100.00 1253 reject_low 10 ALIGNMENT 69 Y12-13m20.q1k chr06 307 390 226665 226747 F 84 95.24 1253 reject_low 8 ALIGNMENT 77 Y12-13m20.q1k chr16 403 318 582046 582131 C 86 96.51 1253 reject_low 6 ALIGNMENT 0 Y12-13m20.q1k chr11 317 62 202718 202717 C 256 0.00 1253 reject_low 13 ALIGNMENT 0 Y12-13m20.q1k chr05 62 317 135425 135424 F 256 0.00 1253 reject_low 11 ALIGNMENT 0 Y12-13m20.q1k chr04 406 961 1352543 1352542 F 556 0.00 1253 reject_low 3 ALIGNMENT 0 Y12-13m20.q1k chr06 391 961 226747 226746 F 571 0.00 1253 reject_low 8 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 1827 1826 F 788 0.00 1168 ambiguous_tel 42 ALIGNMENT 73 Y12-13m22.q1k chr05 1063 850 574920 575137 C 214 80.37 1168 ambiguous_tel 144 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1076402 1076401 C 788 0.00 1168 ambiguous_tel 209 ALIGNMENT 32 Y12-13m22.q1k chr06 849 904 1072 1127 F 56 87.50 1168 ambiguous_tel 244 ALIGNMENT 59 Y12-13m22.q1k chr02 850 1000 2242 2392 F 151 81.46 1168 ambiguous_tel 187 ALIGNMENT 69 Y12-13m22.q1k chr16 850 1025 1663 1840 F 176 81.82 1168 ambiguous_tel 167 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1830 1829 F 788 0.00 1168 ambiguous_tel 194 ALIGNMENT 70 Y12-13m22.q1k chr15 1063 850 1089256 1089473 C 214 79.91 1168 ambiguous_tel 154 ALIGNMENT 926 Y12-13m22.q1k chr16 34 1055 667 1692 F 1022 97.26 1168 ambiguous_tel 9 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 2029 2028 F 788 0.00 1168 ambiguous_tel 122 ALIGNMENT 97 Y12-13m22.q1k chr08 1055 853 560524 560730 C 203 84.73 1168 ambiguous_tel 87 ALIGNMENT 107 Y12-13m22.q1k chr12 861 1080 1874 2099 F 220 85.45 1168 ambiguous_tel 54 ALIGNMENT 131 Y12-13m22.q1k chr15 1087 850 1089374 1089617 C 238 87.39 1168 ambiguous_tel 33 ALIGNMENT 68 Y12-13m22.q1k chr12 853 1087 7473 7713 F 235 78.72 1168 ambiguous_tel 132 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946207 946206 C 788 0.00 1168 ambiguous_tel 150 ALIGNMENT 83 Y12-13m22.q1k chr14 886 1080 1574 1774 F 195 83.59 1168 ambiguous_tel 100 ALIGNMENT 85 Y12-13m22.q1k chr02 850 1063 2170 2387 F 214 82.24 1168 ambiguous_tel 107 ALIGNMENT 85 Y12-13m22.q1k chr12 853 1055 7437 7643 F 203 82.76 1168 ambiguous_tel 113 ALIGNMENT 49 Y12-13m22.q1k chr16 849 951 1734 1836 F 103 84.47 1168 ambiguous_tel 211 ALIGNMENT 0 Y12-13m22.q1k chr12 62 860 1874 1873 F 799 0.00 1168 ambiguous_tel 54 ALIGNMENT 0 Y12-13m22.q1k chr08 62 957 1651 1650 F 896 0.00 1168 ambiguous_tel 136 ALIGNMENT 0 Y12-13m22.q1k chr16 62 885 1483 1482 F 824 0.00 1168 ambiguous_tel 102 ALIGNMENT 121 Y12-13m22.q1k chr05 850 1081 1614 1851 F 232 86.64 1168 ambiguous_tel 41 ALIGNMENT 83 Y12-13m22.q1k chr15 1040 853 1089352 1089542 C 188 83.51 1168 ambiguous_tel 127 ALIGNMENT 0 Y12-13m22.q1k chr15 885 62 1089654 1089653 C 824 0.00 1168 ambiguous_tel 101 ALIGNMENT 33 Y12-13m22.q1k chr12 914 849 1069602 1069667 C 66 84.85 1168 ambiguous_tel 237 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1542 1541 F 788 0.00 1168 ambiguous_tel 24 ALIGNMENT 70 Y12-13m22.q1k chr07 987 850 1089077 1089214 C 138 85.51 1168 ambiguous_tel 172 ALIGNMENT 33 Y12-13m22.q1k chr14 849 914 1933 1998 F 66 84.85 1168 ambiguous_tel 240 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1686 1685 F 788 0.00 1168 ambiguous_tel 82 ALIGNMENT 0 Y12-13m22.q1k chr16 62 849 1663 1662 F 788 0.00 1168 ambiguous_tel 167 ALIGNMENT 0 Y12-13m22.q1k chr15 852 62 1089507 1089506 C 791 0.00 1168 ambiguous_tel 142 ALIGNMENT 932 Y12-13m22.q1k chr10 34 1081 853 1906 F 1048 96.76 1168 ambiguous_tel 17 ALIGNMENT 0 Y12-13m22.q1k chr09 62 849 1794 1793 F 788 0.00 1168 ambiguous_tel 62 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1722 1721 F 788 0.00 1168 ambiguous_tel 143 ALIGNMENT 929 Y12-13m22.q1k chr15 1055 34 1089444 1090469 C 1022 97.36 1168 ambiguous_tel 6 ALIGNMENT 0 Y12-13m22.q1k chr10 62 885 1669 1668 F 824 0.00 1168 ambiguous_tel 21 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946279 946278 C 788 0.00 1168 ambiguous_tel 105 ALIGNMENT 0 Y12-13m22.q1k chr07 885 62 1089395 1089394 C 824 0.00 1168 ambiguous_tel 94 ALIGNMENT 923 Y12-13m22.q1k chr13 34 1055 851 1876 F 1022 97.16 1168 ambiguous_tel 11 ALIGNMENT 65 Y12-13m22.q1k chr12 1087 853 1076302 1076542 C 235 78.30 1168 ambiguous_tel 141 ALIGNMENT 73 Y12-13m22.q1k chr02 886 1087 1486 1693 F 202 81.19 1168 ambiguous_tel 109 ALIGNMENT 0 Y12-13m22.q1k chr08 849 62 560662 560661 C 788 0.00 1168 ambiguous_tel 108 ALIGNMENT 68 Y12-13m22.q1k chr14 853 1087 1721 1961 F 235 78.72 1168 ambiguous_tel 134 ALIGNMENT 83 Y12-13m22.q1k chr12 1040 853 1069725 1069915 C 188 83.51 1168 ambiguous_tel 125 ALIGNMENT 85 Y12-13m22.q1k chr09 845 1005 1897 2057 F 161 85.71 1168 ambiguous_tel 90 ALIGNMENT 0 Y12-13m22.q1k chr09 62 849 1830 1829 F 788 0.00 1168 ambiguous_tel 89 ALIGNMENT 85 Y12-13m22.q1k chr16 853 1055 1594 1800 F 203 82.76 1168 ambiguous_tel 116 ALIGNMENT 80 Y12-13m22.q1k chr02 850 1087 1918 2161 F 238 80.25 1168 ambiguous_tel 91 ALIGNMENT 0 Y12-13m22.q1k chr10 62 844 1880 1879 F 783 0.00 1168 ambiguous_tel 38 ALIGNMENT 43 Y12-13m22.q1k chr12 861 928 2126 2193 F 68 89.71 1168 ambiguous_tel 222 ALIGNMENT 55 Y12-13m22.q1k chr16 964 850 945984 946098 C 115 85.22 1168 ambiguous_tel 205 ALIGNMENT 118 Y12-13m22.q1k chr10 922 1087 1669 1840 F 166 92.77 1168 ambiguous_tel 36 ALIGNMENT 0 Y12-13m22.q1k chr12 860 62 1076355 1076354 C 799 0.00 1168 ambiguous_tel 225 ALIGNMENT 31 Y12-13m22.q1k chr08 914 861 560417 560470 C 54 87.04 1168 ambiguous_tel 248 ALIGNMENT 65 Y12-13m22.q1k chr15 1087 853 1089266 1089506 C 235 78.30 1168 ambiguous_tel 142 ALIGNMENT 0 Y12-13m22.q1k chr10 62 860 1932 1931 F 799 0.00 1168 ambiguous_tel 72 ALIGNMENT 72 Y12-13m22.q1k chr09 958 1087 1686 1821 F 130 87.69 1168 ambiguous_tel 84 ALIGNMENT 0 Y12-13m22.q1k chr15 860 62 1089427 1089426 C 799 0.00 1168 ambiguous_tel 171 ALIGNMENT 0 Y12-13m22.q1k chr02 62 844 1769 1768 F 783 0.00 1168 ambiguous_tel 129 ALIGNMENT 97 Y12-13m22.q1k chr12 1078 850 1076383 1076617 C 229 83.41 1168 ambiguous_tel 79 ALIGNMENT 131 Y12-13m22.q1k chr12 1087 850 1069747 1069990 C 238 87.39 1168 ambiguous_tel 29 ALIGNMENT 0 Y12-13m22.q1k chr16 62 849 1771 1770 F 788 0.00 1168 ambiguous_tel 215 ALIGNMENT 0 Y12-13m22.q1k chr15 852 62 1089543 1089542 C 791 0.00 1168 ambiguous_tel 127 ALIGNMENT 0 Y12-13m22.q1k chr16 860 62 946160 946159 C 799 0.00 1168 ambiguous_tel 164 ALIGNMENT 0 Y12-13m22.q1k chr04 849 62 1530201 1530200 C 788 0.00 1168 ambiguous_tel 207 ALIGNMENT 68 Y12-13m22.q1k chr13 853 1087 1814 2054 F 235 78.72 1168 ambiguous_tel 133 ALIGNMENT 74 Y12-13m22.q1k chr08 886 1025 1651 1792 F 140 86.43 1168 ambiguous_tel 157 ALIGNMENT 0 Y12-13m22.q1k chr08 860 62 560507 560506 C 799 0.00 1168 ambiguous_tel 232 ALIGNMENT 106 Y12-13m22.q1k chr02 853 1055 1597 1803 F 203 86.21 1168 ambiguous_tel 73 ALIGNMENT 0 Y12-13m22.q1k chr14 62 852 1685 1684 F 791 0.00 1168 ambiguous_tel 115 ALIGNMENT 0 Y12-13m22.q1k chr08 62 860 1842 1841 F 799 0.00 1168 ambiguous_tel 230 ALIGNMENT 33 Y12-13m22.q1k chr04 914 849 1530064 1530129 C 66 84.85 1168 ambiguous_tel 233 ALIGNMENT 935 Y12-13m22.q1k chr02 34 1081 670 1723 F 1048 96.85 1168 ambiguous_tel 14 ALIGNMENT 0 Y12-13m22.q1k chr14 62 849 1646 1645 F 788 0.00 1168 ambiguous_tel 68 ALIGNMENT 28 Y12-13m22.q1k chr07 902 850 1089054 1089106 C 53 86.79 1168 ambiguous_tel 249 ALIGNMENT 52 Y12-13m22.q1k chr15 964 850 1089251 1089365 C 115 84.35 1168 ambiguous_tel 210 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946423 946422 C 788 0.00 1168 ambiguous_tel 44 ALIGNMENT 85 Y12-13m22.q1k chr14 853 1055 1685 1891 F 203 82.76 1168 ambiguous_tel 115 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 2098 2097 F 788 0.00 1168 ambiguous_tel 88 ALIGNMENT 0 Y12-13m22.q1k chr05 849 62 575246 575245 C 788 0.00 1168 ambiguous_tel 64 ALIGNMENT 70 Y12-13m22.q1k chr04 1063 850 1530091 1530308 C 214 79.91 1168 ambiguous_tel 151 ALIGNMENT 85 Y12-13m22.q1k chr05 1055 853 575000 575206 C 203 82.76 1168 ambiguous_tel 111 ALIGNMENT 0 Y12-13m22.q1k chr12 62 848 7577 7576 F 787 0.00 1168 ambiguous_tel 181 ALIGNMENT 117 Y12-13m22.q1k chr09 850 1055 1722 1931 F 206 87.86 1168 ambiguous_tel 52 ALIGNMENT 97 Y12-13m22.q1k chr15 1078 850 1089347 1089581 C 229 83.41 1168 ambiguous_tel 80 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1758 1757 F 788 0.00 1168 ambiguous_tel 158 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 1738 1737 F 788 0.00 1168 ambiguous_tel 110 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 7362 7361 F 788 0.00 1168 ambiguous_tel 28 ALIGNMENT 0 Y12-13m22.q1k chr10 62 860 2148 2147 F 799 0.00 1168 ambiguous_tel 221 ALIGNMENT 55 Y12-13m22.q1k chr12 850 964 7614 7728 F 115 85.22 1168 ambiguous_tel 202 ALIGNMENT 0 Y12-13m22.q1k chr06 62 860 1048 1047 F 799 0.00 1168 ambiguous_tel 220 ALIGNMENT 63 Y12-13m22.q1k chr16 861 987 1710 1836 F 127 85.04 1168 ambiguous_tel 185 ALIGNMENT 116 Y12-13m22.q1k chr10 850 1087 1957 2200 F 238 85.29 1168 ambiguous_tel 39 ALIGNMENT 53 Y12-13m22.q1k chr08 850 1000 1759 1909 F 151 80.13 1168 ambiguous_tel 206 ALIGNMENT 0 Y12-13m22.q1k chr09 62 849 1974 1973 F 788 0.00 1168 ambiguous_tel 178 ALIGNMENT 0 Y12-13m22.q1k chr04 852 62 1530378 1530377 C 791 0.00 1168 ambiguous_tel 124 ALIGNMENT 70 Y12-13m22.q1k chr12 1063 850 1069629 1069846 C 214 79.91 1168 ambiguous_tel 152 ALIGNMENT 55 Y12-13m22.q1k chr14 850 964 1862 1976 F 115 85.22 1168 ambiguous_tel 204 ALIGNMENT 87 Y12-13m22.q1k chr02 861 1025 2145 2311 F 165 86.06 1168 ambiguous_tel 121 ALIGNMENT 33 Y12-13m22.q1k chr12 914 849 1076265 1076330 C 66 84.85 1168 ambiguous_tel 238 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946459 946458 C 788 0.00 1168 ambiguous_tel 50 ALIGNMENT 0 Y12-13m22.q1k chr13 62 849 1703 1702 F 788 0.00 1168 ambiguous_tel 31 ALIGNMENT 108 Y12-13m22.q1k chr09 850 1055 1794 2003 F 206 86.41 1168 ambiguous_tel 62 ALIGNMENT 0 Y12-13m22.q1k chr06 62 848 1072 1071 F 787 0.00 1168 ambiguous_tel 244 ALIGNMENT 0 Y12-13m22.q1k chr12 62 848 2150 2149 F 787 0.00 1168 ambiguous_tel 235 ALIGNMENT 72 Y12-13m22.q1k chr16 1029 861 945989 946159 C 169 82.84 1168 ambiguous_tel 164 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1578 1577 F 788 0.00 1168 ambiguous_tel 57 ALIGNMENT 57 Y12-13m22.q1k chr15 1000 849 1089251 1089402 C 152 80.92 1168 ambiguous_tel 193 ALIGNMENT 0 Y12-13m22.q1k chr09 62 849 1866 1865 F 788 0.00 1168 ambiguous_tel 137 ALIGNMENT 85 Y12-13m22.q1k chr13 853 1055 1778 1984 F 203 82.76 1168 ambiguous_tel 114 ALIGNMENT 60 Y12-13m22.q1k chr16 1000 849 945984 946135 C 152 81.58 1168 ambiguous_tel 184 ALIGNMENT 96 Y12-13m22.q1k chr02 850 1055 2098 2307 F 206 84.47 1168 ambiguous_tel 88 ALIGNMENT 55 Y12-13m22.q1k chr13 850 964 1955 2069 F 115 85.22 1168 ambiguous_tel 203 ALIGNMENT 0 Y12-13m22.q1k chr04 848 62 1530130 1530129 C 787 0.00 1168 ambiguous_tel 233 ALIGNMENT 0 Y12-13m22.q1k chr15 849 62 1089474 1089473 C 788 0.00 1168 ambiguous_tel 154 ALIGNMENT 63 Y12-13m22.q1k chr09 861 972 1949 2060 F 112 87.50 1168 ambiguous_tel 186 ALIGNMENT 58 Y12-13m22.q1k chr05 861 1000 1805 1944 F 140 82.14 1168 ambiguous_tel 197 ALIGNMENT 0 Y12-13m22.q1k chr07 849 62 1089323 1089322 C 788 0.00 1168 ambiguous_tel 65 ALIGNMENT 102 Y12-13m22.q1k chr12 850 1055 1791 2000 F 206 85.44 1168 ambiguous_tel 81 ALIGNMENT 0 Y12-13m22.q1k chr16 848 62 946028 946027 C 787 0.00 1168 ambiguous_tel 242 ALIGNMENT 88 Y12-13m22.q1k chr02 849 1080 1953 2190 F 232 81.90 1168 ambiguous_tel 86 ALIGNMENT 72 Y12-13m22.q1k chr02 849 1087 1845 2089 F 239 79.08 1168 ambiguous_tel 117 ALIGNMENT 73 Y12-13m22.q1k chr13 850 1063 1847 2064 F 214 80.37 1168 ambiguous_tel 148 ALIGNMENT 859 Y12-13m22.q1k chr06 34 1063 77 1110 F 1030 94.85 1168 ambiguous_tel 19 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 1957 1956 F 788 0.00 1168 ambiguous_tel 39 ALIGNMENT 60 Y12-13m22.q1k chr05 1000 849 574915 575066 C 152 81.58 1168 ambiguous_tel 179 ALIGNMENT 0 Y12-13m22.q1k chr16 885 62 946495 946494 C 824 0.00 1168 ambiguous_tel 61 ALIGNMENT 42 Y12-13m22.q1k chr16 850 915 1771 1836 F 66 89.39 1168 ambiguous_tel 215 ALIGNMENT 0 Y12-13m22.q1k chr02 62 852 1597 1596 F 791 0.00 1168 ambiguous_tel 73 ALIGNMENT 139 Y12-13m22.q1k chr02 850 1146 1522 1826 F 297 84.51 1168 ambiguous_tel 22 ALIGNMENT 0 Y12-13m22.q1k chr14 62 849 1754 1753 F 788 0.00 1168 ambiguous_tel 149 ALIGNMENT 0 Y12-13m22.q1k chr14 62 849 1862 1861 F 788 0.00 1168 ambiguous_tel 204 ALIGNMENT 83 Y12-13m22.q1k chr12 886 1080 7326 7526 F 195 83.59 1168 ambiguous_tel 96 ALIGNMENT 69 Y12-13m22.q1k chr15 1029 861 1089256 1089426 C 169 82.25 1168 ambiguous_tel 171 ALIGNMENT 0 Y12-13m22.q1k chr08 62 849 1687 1686 F 788 0.00 1168 ambiguous_tel 145 ALIGNMENT 0 Y12-13m22.q1k chr12 62 848 2042 2041 F 787 0.00 1168 ambiguous_tel 180 ALIGNMENT 71 Y12-13m22.q1k chr02 850 1087 1990 2233 F 238 78.99 1168 ambiguous_tel 119 ALIGNMENT 108 Y12-13m22.q1k chr10 850 1055 1777 1986 F 206 86.41 1168 ambiguous_tel 63 ALIGNMENT 0 Y12-13m22.q1k chr09 62 885 1686 1685 F 824 0.00 1168 ambiguous_tel 20 ALIGNMENT 86 Y12-13m22.q1k chr05 850 1087 1686 1929 F 238 81.09 1168 ambiguous_tel 82 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 2242 2241 F 788 0.00 1168 ambiguous_tel 187 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 1990 1989 F 788 0.00 1168 ambiguous_tel 119 ALIGNMENT 0 Y12-13m22.q1k chr13 62 885 1667 1666 F 824 0.00 1168 ambiguous_tel 99 ALIGNMENT 0 Y12-13m22.q1k chr09 62 957 1686 1685 F 896 0.00 1168 ambiguous_tel 84 ALIGNMENT 0 Y12-13m22.q1k chr05 860 62 574983 574982 C 799 0.00 1168 ambiguous_tel 219 ALIGNMENT 43 Y12-13m22.q1k chr12 928 861 1076287 1076354 C 68 89.71 1168 ambiguous_tel 225 ALIGNMENT 0 Y12-13m22.q1k chr05 852 62 575207 575206 C 791 0.00 1168 ambiguous_tel 111 ALIGNMENT 0 Y12-13m22.q1k chr04 849 62 1530309 1530308 C 788 0.00 1168 ambiguous_tel 151 ALIGNMENT 0 Y12-13m22.q1k chr15 849 62 1089366 1089365 C 788 0.00 1168 ambiguous_tel 210 ALIGNMENT 80 Y12-13m22.q1k chr09 850 1038 1866 2057 F 189 83.07 1168 ambiguous_tel 137 ALIGNMENT 91 Y12-13m22.q1k chr12 886 1087 1683 1890 F 202 84.16 1168 ambiguous_tel 60 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1506 1505 F 788 0.00 1168 ambiguous_tel 37 ALIGNMENT 83 Y12-13m22.q1k chr16 886 1080 1483 1683 F 195 83.59 1168 ambiguous_tel 102 ALIGNMENT 107 Y12-13m22.q1k chr10 861 1055 1932 2130 F 195 87.18 1168 ambiguous_tel 72 ALIGNMENT 33 Y12-13m22.q1k chr16 914 849 945962 946027 C 66 84.85 1168 ambiguous_tel 242 ALIGNMENT 0 Y12-13m22.q1k chr14 62 848 1933 1932 F 787 0.00 1168 ambiguous_tel 240 ALIGNMENT 58 Y12-13m22.q1k chr06 861 1000 976 1115 F 140 82.14 1168 ambiguous_tel 198 ALIGNMENT 0 Y12-13m22.q1k chr09 62 860 2021 2020 F 799 0.00 1168 ambiguous_tel 250 ALIGNMENT 0 Y12-13m22.q1k chr02 62 852 1705 1704 F 791 0.00 1168 ambiguous_tel 138 ALIGNMENT 138 Y12-13m22.q1k chr09 886 1146 1686 1954 F 261 86.21 1168 ambiguous_tel 20 ALIGNMENT 70 Y12-13m22.q1k chr02 845 1063 1769 1991 F 219 79.45 1168 ambiguous_tel 129 ALIGNMENT 0 Y12-13m22.q1k chr13 62 849 1847 1846 F 788 0.00 1168 ambiguous_tel 148 ALIGNMENT 0 Y12-13m22.q1k chr12 62 993 1683 1682 F 932 0.00 1168 ambiguous_tel 165 ALIGNMENT 0 Y12-13m22.q1k chr12 62 860 2018 2017 F 799 0.00 1168 ambiguous_tel 160 ALIGNMENT 99 Y12-13m22.q1k chr13 850 1080 1739 1975 F 231 83.55 1168 ambiguous_tel 67 ALIGNMENT 926 Y12-13m22.q1k chr08 1087 34 560598 561657 C 1054 96.39 1168 ambiguous_tel 18 ALIGNMENT 43 Y12-13m22.q1k chr12 861 928 7661 7728 F 68 89.71 1168 ambiguous_tel 223 ALIGNMENT 938 Y12-13m22.q1k chr16 1081 34 946257 947310 C 1048 96.95 1168 ambiguous_tel 12 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1076618 1076617 C 788 0.00 1168 ambiguous_tel 79 ALIGNMENT 43 Y12-13m22.q1k chr14 861 928 1909 1976 F 68 89.71 1168 ambiguous_tel 227 ALIGNMENT 120 Y12-13m22.q1k chr08 1080 850 560533 560769 C 231 86.58 1168 ambiguous_tel 43 ALIGNMENT 0 Y12-13m22.q1k chr08 852 62 560731 560730 C 791 0.00 1168 ambiguous_tel 87 ALIGNMENT 0 Y12-13m22.q1k chr10 62 921 1669 1668 F 860 0.00 1168 ambiguous_tel 36 ALIGNMENT 90 Y12-13m22.q1k chr05 850 1055 1650 1859 F 206 83.50 1168 ambiguous_tel 104 ALIGNMENT 72 Y12-13m22.q1k chr10 958 1087 1669 1804 F 130 87.69 1168 ambiguous_tel 85 ALIGNMENT 96 Y12-13m22.q1k chr05 886 1081 1470 1671 F 196 85.71 1168 ambiguous_tel 70 ALIGNMENT 72 Y12-13m22.q1k chr13 861 1029 1894 2064 F 169 82.84 1168 ambiguous_tel 162 ALIGNMENT 65 Y12-13m22.q1k chr04 1087 853 1530101 1530341 C 235 78.30 1168 ambiguous_tel 139 ALIGNMENT 929 Y12-13m22.q1k chr04 1055 34 1530279 1531304 C 1022 97.36 1168 ambiguous_tel 3 ALIGNMENT 0 Y12-13m22.q1k chr12 62 852 1938 1937 F 791 0.00 1168 ambiguous_tel 131 ALIGNMENT 0 Y12-13m22.q1k chr16 62 849 1555 1554 F 788 0.00 1168 ambiguous_tel 69 ALIGNMENT 90 Y12-13m22.q1k chr16 1055 850 946069 946278 C 206 83.50 1168 ambiguous_tel 105 ALIGNMENT 49 Y12-13m22.q1k chr02 850 964 2278 2392 F 115 83.48 1168 ambiguous_tel 212 ALIGNMENT 33 Y12-13m22.q1k chr15 914 849 1089229 1089294 C 66 84.85 1168 ambiguous_tel 241 ALIGNMENT 0 Y12-13m22.q1k chr06 62 860 976 975 F 799 0.00 1168 ambiguous_tel 198 ALIGNMENT 0 Y12-13m22.q1k chr08 849 62 560554 560553 C 788 0.00 1168 ambiguous_tel 213 ALIGNMENT 0 Y12-13m22.q1k chr08 62 849 1723 1722 F 788 0.00 1168 ambiguous_tel 177 ALIGNMENT 44 Y12-13m22.q1k chr16 1087 994 946395 946494 C 94 85.11 1168 ambiguous_tel 166 ALIGNMENT 43 Y12-13m22.q1k chr15 928 861 1089251 1089318 C 68 89.71 1168 ambiguous_tel 228 ALIGNMENT 0 Y12-13m22.q1k chr10 62 860 2004 2003 F 799 0.00 1168 ambiguous_tel 120 ALIGNMENT 37 Y12-13m22.q1k chr02 861 928 2325 2392 F 68 86.76 1168 ambiguous_tel 231 ALIGNMENT 0 Y12-13m22.q1k chr16 848 62 946136 946135 C 787 0.00 1168 ambiguous_tel 184 ALIGNMENT 69 Y12-13m22.q1k chr12 1029 861 1069629 1069799 C 169 82.25 1168 ambiguous_tel 169 ALIGNMENT 83 Y12-13m22.q1k chr05 1080 886 575117 575317 C 195 83.59 1168 ambiguous_tel 93 ALIGNMENT 99 Y12-13m22.q1k chr07 1080 850 1089086 1089322 C 231 83.55 1168 ambiguous_tel 65 ALIGNMENT 0 Y12-13m22.q1k chr12 62 860 7553 7552 F 799 0.00 1168 ambiguous_tel 161 ALIGNMENT 61 Y12-13m22.q1k chr08 850 1029 1723 1904 F 180 80.00 1168 ambiguous_tel 177 ALIGNMENT 0 Y12-13m22.q1k chr14 62 852 1721 1720 F 791 0.00 1168 ambiguous_tel 134 ALIGNMENT 0 Y12-13m22.q1k chr07 849 62 1089359 1089358 C 788 0.00 1168 ambiguous_tel 27 ALIGNMENT 0 Y12-13m22.q1k chr07 860 62 1089168 1089167 C 799 0.00 1168 ambiguous_tel 199 ALIGNMENT 83 Y12-13m22.q1k chr12 1080 886 1069826 1070026 C 195 83.59 1168 ambiguous_tel 97 ALIGNMENT 932 Y12-13m22.q1k chr09 34 1081 870 1923 F 1048 96.76 1168 ambiguous_tel 16 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 7398 7397 F 788 0.00 1168 ambiguous_tel 66 ALIGNMENT 0 Y12-13m22.q1k chr05 62 921 1470 1469 F 860 0.00 1168 ambiguous_tel 118 ALIGNMENT 85 Y12-13m22.q1k chr02 861 1087 1677 1909 F 227 81.50 1168 ambiguous_tel 83 ALIGNMENT 0 Y12-13m22.q1k chr05 62 860 1805 1804 F 799 0.00 1168 ambiguous_tel 197 ALIGNMENT 117 Y12-13m22.q1k chr12 850 1080 1755 1991 F 231 86.15 1168 ambiguous_tel 45 ALIGNMENT 0 Y12-13m22.q1k chr16 860 62 946304 946303 C 799 0.00 1168 ambiguous_tel 51 ALIGNMENT 55 Y12-13m22.q1k chr05 964 850 574915 575029 C 115 85.22 1168 ambiguous_tel 200 ALIGNMENT 0 Y12-13m22.q1k chr12 62 885 1683 1682 F 824 0.00 1168 ambiguous_tel 60 ALIGNMENT 0 Y12-13m22.q1k chr02 62 885 1486 1485 F 824 0.00 1168 ambiguous_tel 109 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 1677 1676 F 799 0.00 1168 ambiguous_tel 83 ALIGNMENT 901 Y12-13m22.q1k chr08 34 987 835 1788 F 954 98.53 1168 ambiguous_tel 1 ALIGNMENT 100 Y12-13m22.q1k chr02 850 1081 1558 1795 F 232 83.62 1168 ambiguous_tel 59 ALIGNMENT 0 Y12-13m22.q1k chr15 848 62 1089403 1089402 C 787 0.00 1168 ambiguous_tel 193 ALIGNMENT 98 Y12-13m22.q1k chr10 850 1087 1813 2056 F 238 82.77 1168 ambiguous_tel 55 ALIGNMENT 0 Y12-13m22.q1k chr14 62 848 1825 1824 F 787 0.00 1168 ambiguous_tel 183 ALIGNMENT 0 Y12-13m22.q1k chr02 62 848 1881 1880 F 787 0.00 1168 ambiguous_tel 103 ALIGNMENT 73 Y12-13m22.q1k chr05 850 1063 1722 1939 F 214 80.37 1168 ambiguous_tel 143 ALIGNMENT 117 Y12-13m22.q1k chr10 850 1055 1705 1914 F 206 87.86 1168 ambiguous_tel 53 ALIGNMENT 0 Y12-13m22.q1k chr12 848 62 1076439 1076438 C 787 0.00 1168 ambiguous_tel 192 ALIGNMENT 0 Y12-13m22.q1k chr15 849 62 1089618 1089617 C 788 0.00 1168 ambiguous_tel 33 ALIGNMENT 131 Y12-13m22.q1k chr16 850 1087 1519 1762 F 238 87.39 1168 ambiguous_tel 34 ALIGNMENT 43 Y12-13m22.q1k chr13 861 928 2002 2069 F 68 89.71 1168 ambiguous_tel 226 ALIGNMENT 131 Y12-13m22.q1k chr12 1087 850 1076410 1076653 C 238 87.39 1168 ambiguous_tel 30 ALIGNMENT 43 Y12-13m22.q1k chr06 861 928 1048 1115 F 68 89.71 1168 ambiguous_tel 220 ALIGNMENT 64 Y12-13m22.q1k chr08 958 1080 1651 1779 F 123 86.99 1168 ambiguous_tel 136 ALIGNMENT 131 Y12-13m22.q1k chr13 850 1087 1703 1946 F 238 87.39 1168 ambiguous_tel 31 ALIGNMENT 73 Y12-13m22.q1k chr08 850 1063 1687 1904 F 214 80.37 1168 ambiguous_tel 145 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 1813 1812 F 788 0.00 1168 ambiguous_tel 55 ALIGNMENT 0 Y12-13m22.q1k chr08 852 62 560695 560694 C 791 0.00 1168 ambiguous_tel 123 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 1741 1740 F 788 0.00 1168 ambiguous_tel 47 ALIGNMENT 0 Y12-13m22.q1k chr05 62 860 1877 1876 F 799 0.00 1168 ambiguous_tel 218 ALIGNMENT 97 Y12-13m22.q1k chr04 1078 850 1530182 1530416 C 229 83.41 1168 ambiguous_tel 77 ALIGNMENT 0 Y12-13m22.q1k chr10 62 848 2172 2171 F 787 0.00 1168 ambiguous_tel 246 ALIGNMENT 0 Y12-13m22.q1k chr09 62 849 1722 1721 F 788 0.00 1168 ambiguous_tel 52 ALIGNMENT 109 Y12-13m22.q1k chr02 850 1081 1630 1867 F 232 84.91 1168 ambiguous_tel 48 ALIGNMENT 0 Y12-13m22.q1k chr12 852 62 1076543 1076542 C 791 0.00 1168 ambiguous_tel 141 ALIGNMENT 58 Y12-13m22.q1k chr10 850 964 2101 2215 F 115 86.09 1168 ambiguous_tel 196 ALIGNMENT 0 Y12-13m22.q1k chr06 62 860 940 939 F 799 0.00 1168 ambiguous_tel 176 ALIGNMENT 83 Y12-13m22.q1k chr04 1040 853 1530187 1530377 C 188 83.51 1168 ambiguous_tel 124 ALIGNMENT 72 Y12-13m22.q1k chr05 1029 861 574920 575090 C 169 82.84 1168 ambiguous_tel 159 ALIGNMENT 0 Y12-13m22.q1k chr12 860 62 1076463 1076462 C 799 0.00 1168 ambiguous_tel 170 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 1971 1970 F 788 0.00 1168 ambiguous_tel 146 ALIGNMENT 52 Y12-13m22.q1k chr12 964 850 1076287 1076401 C 115 84.35 1168 ambiguous_tel 209 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 2145 2144 F 799 0.00 1168 ambiguous_tel 121 ALIGNMENT 0 Y12-13m22.q1k chr12 62 885 7326 7325 F 824 0.00 1168 ambiguous_tel 96 ALIGNMENT 0 Y12-13m22.q1k chr12 62 860 7661 7660 F 799 0.00 1168 ambiguous_tel 223 ALIGNMENT 0 Y12-13m22.q1k chr14 62 849 1610 1609 F 788 0.00 1168 ambiguous_tel 32 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1614 1613 F 788 0.00 1168 ambiguous_tel 41 ALIGNMENT 0 Y12-13m22.q1k chr05 62 849 1650 1649 F 788 0.00 1168 ambiguous_tel 104 ALIGNMENT 0 Y12-13m22.q1k chr14 62 860 1801 1800 F 799 0.00 1168 ambiguous_tel 163 ALIGNMENT 0 Y12-13m22.q1k chr04 885 62 1530489 1530488 C 824 0.00 1168 ambiguous_tel 92 ALIGNMENT 73 Y12-13m22.q1k chr16 1063 850 945989 946206 C 214 80.37 1168 ambiguous_tel 150 ALIGNMENT 131 Y12-13m22.q1k chr12 850 1087 7362 7605 F 238 87.39 1168 ambiguous_tel 28 ALIGNMENT 926 Y12-13m22.q1k chr07 1055 34 1089185 1090210 C 1022 97.26 1168 ambiguous_tel 8 ALIGNMENT 69 Y12-13m22.q1k chr12 1029 861 1076292 1076462 C 169 82.25 1168 ambiguous_tel 170 ALIGNMENT 113 Y12-13m22.q1k chr12 850 1087 1827 2070 F 238 84.87 1168 ambiguous_tel 42 ALIGNMENT 0 Y12-13m22.q1k chr13 62 849 1739 1738 F 788 0.00 1168 ambiguous_tel 67 ALIGNMENT 68 Y12-13m22.q1k chr05 1087 853 574930 575170 C 235 78.72 1168 ambiguous_tel 130 ALIGNMENT 0 Y12-13m22.q1k chr12 885 62 1076690 1076689 C 824 0.00 1168 ambiguous_tel 98 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 2026 2025 F 788 0.00 1168 ambiguous_tel 58 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 1558 1557 F 788 0.00 1168 ambiguous_tel 59 ALIGNMENT 85 Y12-13m22.q1k chr10 850 1029 2029 2210 F 180 84.44 1168 ambiguous_tel 122 ALIGNMENT 97 Y12-13m22.q1k chr12 1078 850 1069720 1069954 C 229 83.41 1168 ambiguous_tel 78 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 2065 2064 F 788 0.00 1168 ambiguous_tel 173 ALIGNMENT 0 Y12-13m22.q1k chr05 62 848 1901 1900 F 787 0.00 1168 ambiguous_tel 243 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946387 946386 C 788 0.00 1168 ambiguous_tel 76 ALIGNMENT 58 Y12-13m22.q1k chr05 850 964 1830 1944 F 115 86.09 1168 ambiguous_tel 194 ALIGNMENT 0 Y12-13m22.q1k chr08 860 62 560471 560470 C 799 0.00 1168 ambiguous_tel 248 ALIGNMENT 91 Y12-13m22.q1k chr12 922 1080 1683 1847 F 159 88.68 1168 ambiguous_tel 74 ALIGNMENT 0 Y12-13m22.q1k chr12 860 62 1069800 1069799 C 799 0.00 1168 ambiguous_tel 169 ALIGNMENT 0 Y12-13m22.q1k chr16 62 852 1594 1593 F 791 0.00 1168 ambiguous_tel 116 ALIGNMENT 68 Y12-13m22.q1k chr10 850 1000 2065 2215 F 151 83.44 1168 ambiguous_tel 173 ALIGNMENT 0 Y12-13m22.q1k chr16 921 62 946495 946494 C 860 0.00 1168 ambiguous_tel 75 ALIGNMENT 0 Y12-13m22.q1k chr14 62 885 1574 1573 F 824 0.00 1168 ambiguous_tel 100 ALIGNMENT 43 Y12-13m22.q1k chr04 928 861 1530086 1530153 C 68 89.71 1168 ambiguous_tel 217 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1069847 1069846 C 788 0.00 1168 ambiguous_tel 152 ALIGNMENT 57 Y12-13m22.q1k chr04 1000 849 1530086 1530237 C 152 80.92 1168 ambiguous_tel 190 ALIGNMENT 59 Y12-13m22.q1k chr08 1000 850 560439 560589 C 151 81.46 1168 ambiguous_tel 188 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 1630 1629 F 788 0.00 1168 ambiguous_tel 48 ALIGNMENT 72 Y12-13m22.q1k chr12 861 1029 2018 2188 F 169 82.84 1168 ambiguous_tel 160 ALIGNMENT 0 Y12-13m22.q1k chr12 848 62 1076331 1076330 C 787 0.00 1168 ambiguous_tel 238 ALIGNMENT 43 Y12-13m22.q1k chr12 928 861 1069624 1069691 C 68 89.71 1168 ambiguous_tel 224 ALIGNMENT 109 Y12-13m22.q1k chr16 1081 850 946221 946458 C 232 84.91 1168 ambiguous_tel 50 ALIGNMENT 33 Y12-13m22.q1k chr13 849 914 2026 2091 F 66 84.85 1168 ambiguous_tel 239 ALIGNMENT 0 Y12-13m22.q1k chr12 62 860 2126 2125 F 799 0.00 1168 ambiguous_tel 222 ALIGNMENT 935 Y12-13m22.q1k chr12 34 1081 867 1920 F 1048 96.85 1168 ambiguous_tel 15 ALIGNMENT 0 Y12-13m22.q1k chr07 849 62 1089107 1089106 C 788 0.00 1168 ambiguous_tel 249 ALIGNMENT 0 Y12-13m22.q1k chr08 62 860 1806 1805 F 799 0.00 1168 ambiguous_tel 216 ALIGNMENT 32 Y12-13m22.q1k chr08 849 904 1866 1921 F 56 87.50 1168 ambiguous_tel 245 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 1522 1521 F 788 0.00 1168 ambiguous_tel 22 ALIGNMENT 953 Y12-13m22.q1k chr05 34 1087 654 1713 F 1054 97.25 1168 ambiguous_tel 2 ALIGNMENT 73 Y12-13m22.q1k chr05 850 1029 1758 1939 F 180 82.22 1168 ambiguous_tel 158 ALIGNMENT 0 Y12-13m22.q1k chr07 852 62 1089248 1089247 C 791 0.00 1168 ambiguous_tel 174 ALIGNMENT 0 Y12-13m22.q1k chr13 62 860 1894 1893 F 799 0.00 1168 ambiguous_tel 162 ALIGNMENT 0 Y12-13m22.q1k chr07 849 62 1089215 1089214 C 788 0.00 1168 ambiguous_tel 172 ALIGNMENT 128 Y12-13m22.q1k chr05 850 1087 1506 1749 F 238 86.97 1168 ambiguous_tel 37 ALIGNMENT 55 Y12-13m22.q1k chr12 850 964 2079 2193 F 115 85.22 1168 ambiguous_tel 201 ALIGNMENT 60 Y12-13m22.q1k chr14 849 1000 1825 1976 F 152 81.58 1168 ambiguous_tel 183 ALIGNMENT 73 Y12-13m22.q1k chr12 850 1063 1971 2188 F 214 80.37 1168 ambiguous_tel 146 ALIGNMENT 73 Y12-13m22.q1k chr14 850 1063 1754 1971 F 214 80.37 1168 ambiguous_tel 149 ALIGNMENT 83 Y12-13m22.q1k chr12 1080 886 1076489 1076689 C 195 83.59 1168 ambiguous_tel 98 ALIGNMENT 0 Y12-13m22.q1k chr13 62 848 1918 1917 F 787 0.00 1168 ambiguous_tel 182 ALIGNMENT 0 Y12-13m22.q1k chr05 848 62 574959 574958 C 787 0.00 1168 ambiguous_tel 234 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 1705 1704 F 788 0.00 1168 ambiguous_tel 53 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946351 946350 C 788 0.00 1168 ambiguous_tel 40 ALIGNMENT 0 Y12-13m22.q1k chr06 62 885 893 892 F 824 0.00 1168 ambiguous_tel 189 ALIGNMENT 0 Y12-13m22.q1k chr05 848 62 575067 575066 C 787 0.00 1168 ambiguous_tel 179 ALIGNMENT 0 Y12-13m22.q1k chr12 62 848 7685 7684 F 787 0.00 1168 ambiguous_tel 236 ALIGNMENT 105 Y12-13m22.q1k chr16 1055 850 946177 946386 C 206 85.92 1168 ambiguous_tel 76 ALIGNMENT 0 Y12-13m22.q1k chr09 62 921 1686 1685 F 860 0.00 1168 ambiguous_tel 35 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 2278 2277 F 788 0.00 1168 ambiguous_tel 212 ALIGNMENT 0 Y12-13m22.q1k chr07 852 62 1089284 1089283 C 791 0.00 1168 ambiguous_tel 112 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 1849 1848 F 788 0.00 1168 ambiguous_tel 56 ALIGNMENT 58 Y12-13m22.q1k chr06 850 964 1001 1115 F 115 86.09 1168 ambiguous_tel 195 ALIGNMENT 0 Y12-13m22.q1k chr13 62 860 2002 2001 F 799 0.00 1168 ambiguous_tel 226 ALIGNMENT 920 Y12-13m22.q1k chr14 34 1055 758 1783 F 1022 97.06 1168 ambiguous_tel 13 ALIGNMENT 83 Y12-13m22.q1k chr08 1080 886 560641 560841 C 195 83.59 1168 ambiguous_tel 95 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 2361 2360 F 799 0.00 1168 ambiguous_tel 247 ALIGNMENT 63 Y12-13m22.q1k chr09 850 936 1974 2060 F 87 93.10 1168 ambiguous_tel 178 ALIGNMENT 131 Y12-13m22.q1k chr04 1087 850 1530209 1530452 C 238 87.39 1168 ambiguous_tel 25 ALIGNMENT 69 Y12-13m22.q1k chr04 1029 861 1530091 1530261 C 169 82.25 1168 ambiguous_tel 168 ALIGNMENT 37 Y12-13m22.q1k chr08 928 861 560439 560506 C 68 86.76 1168 ambiguous_tel 232 ALIGNMENT 70 Y12-13m22.q1k chr12 1063 850 1076292 1076509 C 214 79.91 1168 ambiguous_tel 153 ALIGNMENT 0 Y12-13m22.q1k chr12 852 62 1076579 1076578 C 791 0.00 1168 ambiguous_tel 126 ALIGNMENT 118 Y12-13m22.q1k chr10 845 1081 1880 2122 F 237 85.65 1168 ambiguous_tel 38 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 2170 2169 F 788 0.00 1168 ambiguous_tel 107 ALIGNMENT 0 Y12-13m22.q1k chr12 885 62 1070027 1070026 C 824 0.00 1168 ambiguous_tel 97 ALIGNMENT 99 Y12-13m22.q1k chr14 850 1080 1646 1882 F 231 83.55 1168 ambiguous_tel 68 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 2073 2072 F 799 0.00 1168 ambiguous_tel 71 ALIGNMENT 131 Y12-13m22.q1k chr14 850 1087 1610 1853 F 238 87.39 1168 ambiguous_tel 32 ALIGNMENT 60 Y12-13m22.q1k chr12 849 1000 2042 2193 F 152 81.58 1168 ambiguous_tel 180 ALIGNMENT 923 Y12-13m22.q1k chr12 34 1055 6510 7535 F 1022 97.16 1168 ambiguous_tel 10 ALIGNMENT 0 Y12-13m22.q1k chr09 62 844 1897 1896 F 783 0.00 1168 ambiguous_tel 90 ALIGNMENT 43 Y12-13m22.q1k chr10 861 928 2148 2215 F 68 89.71 1168 ambiguous_tel 221 ALIGNMENT 110 Y12-13m22.q1k chr16 1080 861 946078 946303 C 220 85.91 1168 ambiguous_tel 51 ALIGNMENT 0 Y12-13m22.q1k chr08 860 62 560615 560614 C 799 0.00 1168 ambiguous_tel 156 ALIGNMENT 83 Y12-13m22.q1k chr04 1080 886 1530288 1530488 C 195 83.59 1168 ambiguous_tel 92 ALIGNMENT 57 Y12-13m22.q1k chr12 1000 849 1069624 1069775 C 152 80.92 1168 ambiguous_tel 191 ALIGNMENT 118 Y12-13m22.q1k chr09 922 1087 1686 1857 F 166 92.77 1168 ambiguous_tel 35 ALIGNMENT 85 Y12-13m22.q1k chr08 1063 850 560444 560661 C 214 82.24 1168 ambiguous_tel 108 ALIGNMENT 98 Y12-13m22.q1k chr10 850 1087 1849 2092 F 238 82.77 1168 ambiguous_tel 56 ALIGNMENT 0 Y12-13m22.q1k chr12 860 62 1069692 1069691 C 799 0.00 1168 ambiguous_tel 224 ALIGNMENT 74 Y12-13m22.q1k chr02 861 1080 1821 2046 F 220 80.45 1168 ambiguous_tel 128 ALIGNMENT 60 Y12-13m22.q1k chr12 849 1000 7577 7728 F 152 81.58 1168 ambiguous_tel 181 ALIGNMENT 99 Y12-13m22.q1k chr05 1080 850 575009 575245 C 231 83.55 1168 ambiguous_tel 64 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1069955 1069954 C 788 0.00 1168 ambiguous_tel 78 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1076654 1076653 C 788 0.00 1168 ambiguous_tel 30 ALIGNMENT 0 Y12-13m22.q1k chr13 62 852 1778 1777 F 791 0.00 1168 ambiguous_tel 114 ALIGNMENT 81 Y12-13m22.q1k chr10 861 1063 2004 2210 F 203 82.27 1168 ambiguous_tel 120 ALIGNMENT 91 Y12-13m22.q1k chr16 1087 886 946287 946494 C 202 84.16 1168 ambiguous_tel 61 ALIGNMENT 0 Y12-13m22.q1k chr05 62 885 1470 1469 F 824 0.00 1168 ambiguous_tel 70 ALIGNMENT 95 Y12-13m22.q1k chr02 850 1087 2026 2269 F 238 82.35 1168 ambiguous_tel 58 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 1791 1790 F 788 0.00 1168 ambiguous_tel 81 ALIGNMENT 83 Y12-13m22.q1k chr12 1040 853 1076388 1076578 C 188 83.51 1168 ambiguous_tel 126 ALIGNMENT 99 Y12-13m22.q1k chr12 850 1080 7398 7634 F 231 83.55 1168 ambiguous_tel 66 ALIGNMENT 0 Y12-13m22.q1k chr12 852 62 1069916 1069915 C 791 0.00 1168 ambiguous_tel 125 ALIGNMENT 52 Y12-13m22.q1k chr12 964 850 1069624 1069738 C 115 84.35 1168 ambiguous_tel 208 ALIGNMENT 57 Y12-13m22.q1k chr12 1000 849 1076287 1076438 C 152 80.92 1168 ambiguous_tel 192 ALIGNMENT 120 Y12-13m22.q1k chr16 1080 850 946186 946422 C 231 86.58 1168 ambiguous_tel 44 ALIGNMENT 0 Y12-13m22.q1k chr08 62 849 1759 1758 F 788 0.00 1168 ambiguous_tel 206 ALIGNMENT 115 Y12-13m22.q1k chr09 850 1081 1758 1995 F 232 85.78 1168 ambiguous_tel 46 ALIGNMENT 33 Y12-13m22.q1k chr05 914 849 574893 574958 C 66 84.85 1168 ambiguous_tel 234 ALIGNMENT 65 Y12-13m22.q1k chr12 1087 853 1069639 1069879 C 235 78.30 1168 ambiguous_tel 140 ALIGNMENT 83 Y12-13m22.q1k chr15 1080 886 1089453 1089653 C 195 83.59 1168 ambiguous_tel 101 ALIGNMENT 0 Y12-13m22.q1k chr14 62 860 1909 1908 F 799 0.00 1168 ambiguous_tel 227 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1069739 1069738 C 788 0.00 1168 ambiguous_tel 208 ALIGNMENT 0 Y12-13m22.q1k chr04 849 62 1530417 1530416 C 788 0.00 1168 ambiguous_tel 77 ALIGNMENT 32 Y12-13m22.q1k chr10 849 904 2172 2227 F 56 87.50 1168 ambiguous_tel 246 ALIGNMENT 72 Y12-13m22.q1k chr14 861 1029 1801 1971 F 169 82.84 1168 ambiguous_tel 163 ALIGNMENT 49 Y12-13m22.q1k chr08 964 850 560439 560553 C 115 83.48 1168 ambiguous_tel 213 ALIGNMENT 0 Y12-13m22.q1k chr02 62 848 1845 1844 F 787 0.00 1168 ambiguous_tel 117 ALIGNMENT 83 Y12-13m22.q1k chr13 886 1080 1667 1867 F 195 83.59 1168 ambiguous_tel 99 ALIGNMENT 0 Y12-13m22.q1k chr05 849 62 575030 575029 C 788 0.00 1168 ambiguous_tel 200 ALIGNMENT 98 Y12-13m22.q1k chr02 861 1080 2073 2298 F 220 84.09 1168 ambiguous_tel 71 ALIGNMENT 0 Y12-13m22.q1k chr13 62 849 1955 1954 F 788 0.00 1168 ambiguous_tel 203 ALIGNMENT 31 Y12-13m22.q1k chr05 849 891 1901 1943 F 43 93.02 1168 ambiguous_tel 243 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 2325 2324 F 799 0.00 1168 ambiguous_tel 231 ALIGNMENT 72 Y12-13m22.q1k chr12 861 1029 7553 7723 F 169 82.84 1168 ambiguous_tel 161 ALIGNMENT 0 Y12-13m22.q1k chr15 848 62 1089295 1089294 C 787 0.00 1168 ambiguous_tel 241 ALIGNMENT 0 Y12-13m22.q1k chr12 852 62 1069880 1069879 C 791 0.00 1168 ambiguous_tel 140 ALIGNMENT 46 Y12-13m22.q1k chr06 886 1087 893 1100 F 202 76.73 1168 ambiguous_tel 189 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 2079 2078 F 788 0.00 1168 ambiguous_tel 201 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 1821 1820 F 799 0.00 1168 ambiguous_tel 128 ALIGNMENT 0 Y12-13m22.q1k chr16 62 852 1630 1629 F 791 0.00 1168 ambiguous_tel 175 ALIGNMENT 0 Y12-13m22.q1k chr06 62 849 1001 1000 F 788 0.00 1168 ambiguous_tel 195 ALIGNMENT 0 Y12-13m22.q1k chr16 62 849 1519 1518 F 788 0.00 1168 ambiguous_tel 34 ALIGNMENT 115 Y12-13m22.q1k chr10 850 1081 1741 1978 F 232 85.78 1168 ambiguous_tel 47 ALIGNMENT 0 Y12-13m22.q1k chr13 62 848 2026 2025 F 787 0.00 1168 ambiguous_tel 239 ALIGNMENT 85 Y12-13m22.q1k chr08 1025 853 560520 560694 C 173 84.97 1168 ambiguous_tel 123 ALIGNMENT 43 Y12-13m22.q1k chr05 861 928 1877 1944 F 68 89.71 1168 ambiguous_tel 218 ALIGNMENT 43 Y12-13m22.q1k chr16 928 861 945984 946051 C 68 89.71 1168 ambiguous_tel 229 ALIGNMENT 31 Y12-13m22.q1k chr02 861 914 2361 2414 F 54 87.04 1168 ambiguous_tel 247 ALIGNMENT 0 Y12-13m22.q1k chr16 860 62 946052 946051 C 799 0.00 1168 ambiguous_tel 229 ALIGNMENT 0 Y12-13m22.q1k chr09 62 860 1949 1948 F 799 0.00 1168 ambiguous_tel 186 ALIGNMENT 926 Y12-13m22.q1k chr05 1055 34 575108 576133 C 1022 97.26 1168 ambiguous_tel 7 ALIGNMENT 0 Y12-13m22.q1k chr16 852 62 946240 946239 C 791 0.00 1168 ambiguous_tel 135 ALIGNMENT 67 Y12-13m22.q1k chr16 853 1025 1630 1804 F 173 81.50 1168 ambiguous_tel 175 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 1719 1718 F 788 0.00 1168 ambiguous_tel 49 ALIGNMENT 99 Y12-13m22.q1k chr16 850 1080 1555 1791 F 231 83.55 1168 ambiguous_tel 69 ALIGNMENT 0 Y12-13m22.q1k chr04 849 62 1530453 1530452 C 788 0.00 1168 ambiguous_tel 25 ALIGNMENT 0 Y12-13m22.q1k chr12 62 921 1683 1682 F 860 0.00 1168 ambiguous_tel 74 ALIGNMENT 70 Y12-13m22.q1k chr02 853 1081 1705 1939 F 229 79.48 1168 ambiguous_tel 138 ALIGNMENT 0 Y12-13m22.q1k chr16 62 848 1734 1733 F 787 0.00 1168 ambiguous_tel 211 ALIGNMENT 43 Y12-13m22.q1k chr05 928 861 574915 574982 C 68 89.71 1168 ambiguous_tel 219 ALIGNMENT 929 Y12-13m22.q1k chr12 1055 34 1076480 1077505 C 1022 97.36 1168 ambiguous_tel 5 ALIGNMENT 75 Y12-13m22.q1k chr08 1029 861 560444 560614 C 169 83.43 1168 ambiguous_tel 156 ALIGNMENT 74 Y12-13m22.q1k chr02 850 1087 1738 1981 F 238 79.41 1168 ambiguous_tel 110 ALIGNMENT 43 Y12-13m22.q1k chr07 915 849 1089077 1089143 C 67 89.55 1168 ambiguous_tel 214 ALIGNMENT 0 Y12-13m22.q1k chr04 860 62 1530262 1530261 C 799 0.00 1168 ambiguous_tel 168 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 1777 1776 F 788 0.00 1168 ambiguous_tel 63 ALIGNMENT 83 Y12-13m22.q1k chr07 1080 886 1089194 1089394 C 195 83.59 1168 ambiguous_tel 94 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1069991 1069990 C 788 0.00 1168 ambiguous_tel 29 ALIGNMENT 111 Y12-13m22.q1k chr05 850 1055 1578 1787 F 206 86.89 1168 ambiguous_tel 57 ALIGNMENT 0 Y12-13m22.q1k chr08 62 848 1866 1865 F 787 0.00 1168 ambiguous_tel 245 ALIGNMENT 131 Y12-13m22.q1k chr07 1087 850 1089115 1089358 C 238 87.39 1168 ambiguous_tel 27 ALIGNMENT 929 Y12-13m22.q1k chr12 1055 34 1069817 1070842 C 1022 97.36 1168 ambiguous_tel 4 ALIGNMENT 0 Y12-13m22.q1k chr08 62 885 1651 1650 F 824 0.00 1168 ambiguous_tel 157 ALIGNMENT 72 Y12-13m22.q1k chr05 922 1081 1470 1635 F 160 84.38 1168 ambiguous_tel 118 ALIGNMENT 33 Y12-13m22.q1k chr12 849 914 2150 2215 F 66 84.85 1168 ambiguous_tel 235 ALIGNMENT 44 Y12-13m22.q1k chr12 994 1087 1683 1782 F 94 85.11 1168 ambiguous_tel 165 ALIGNMENT 0 Y12-13m22.q1k chr05 860 62 575091 575090 C 799 0.00 1168 ambiguous_tel 159 ALIGNMENT 143 Y12-13m22.q1k chr08 1087 850 560562 560805 C 238 89.08 1168 ambiguous_tel 23 ALIGNMENT 0 Y12-13m22.q1k chr10 62 957 1669 1668 F 896 0.00 1168 ambiguous_tel 85 ALIGNMENT 0 Y12-13m22.q1k chr08 849 62 560770 560769 C 788 0.00 1168 ambiguous_tel 43 ALIGNMENT 0 Y12-13m22.q1k chr10 62 849 2101 2100 F 788 0.00 1168 ambiguous_tel 196 ALIGNMENT 33 Y12-13m22.q1k chr12 849 914 7685 7750 F 66 84.85 1168 ambiguous_tel 236 ALIGNMENT 73 Y12-13m22.q1k chr12 850 1063 7506 7723 F 214 80.37 1168 ambiguous_tel 147 ALIGNMENT 43 Y12-13m22.q1k chr08 861 964 1806 1909 F 104 82.69 1168 ambiguous_tel 216 ALIGNMENT 0 Y12-13m22.q1k chr02 62 860 2217 2216 F 799 0.00 1168 ambiguous_tel 155 ALIGNMENT 0 Y12-13m22.q1k chr15 860 62 1089319 1089318 C 799 0.00 1168 ambiguous_tel 228 ALIGNMENT 0 Y12-13m22.q1k chr08 849 62 560806 560805 C 788 0.00 1168 ambiguous_tel 23 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 7614 7613 F 788 0.00 1168 ambiguous_tel 202 ALIGNMENT 67 Y12-13m22.q1k chr07 1025 853 1089073 1089247 C 173 81.50 1168 ambiguous_tel 174 ALIGNMENT 1028 Y12-13m22.p1k chr09 1339 21 201218 202542 C 1319 93.93 1348 accept 0 ALIGNMENT 0 Y12-13m22.q1k chr13 62 852 1814 1813 F 791 0.00 1168 ambiguous_tel 133 ALIGNMENT 0 Y12-13m22.q1k chr08 885 62 560842 560841 C 824 0.00 1168 ambiguous_tel 95 ALIGNMENT 0 Y12-13m22.q1k chr12 849 62 1076510 1076509 C 788 0.00 1168 ambiguous_tel 153 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 1755 1754 F 788 0.00 1168 ambiguous_tel 45 ALIGNMENT 60 Y12-13m22.q1k chr13 849 1000 1918 2069 F 152 81.58 1168 ambiguous_tel 182 ALIGNMENT 0 Y12-13m22.q1k chr05 849 62 575282 575281 C 788 0.00 1168 ambiguous_tel 26 ALIGNMENT 0 Y12-13m22.q1k chr12 62 852 7473 7472 F 791 0.00 1168 ambiguous_tel 132 ALIGNMENT 145 Y12-13m22.q1k chr05 850 1081 1542 1779 F 232 90.09 1168 ambiguous_tel 24 ALIGNMENT 0 Y12-13m22.q1k chr16 62 860 1710 1709 F 799 0.00 1168 ambiguous_tel 185 ALIGNMENT 59 Y12-13m22.q1k chr07 951 861 1089077 1089167 C 91 90.11 1168 ambiguous_tel 199 ALIGNMENT 75 Y12-13m22.q1k chr02 861 1029 2217 2387 F 169 83.43 1168 ambiguous_tel 155 ALIGNMENT 52 Y12-13m22.q1k chr04 964 850 1530086 1530200 C 115 84.35 1168 ambiguous_tel 207 ALIGNMENT 85 Y12-13m22.q1k chr07 1055 853 1089077 1089283 C 203 82.76 1168 ambiguous_tel 112 ALIGNMENT 109 Y12-13m22.q1k chr12 850 1081 1719 1956 F 232 84.91 1168 ambiguous_tel 49 ALIGNMENT 40 Y12-13m22.q1k chr08 861 928 1842 1909 F 68 88.24 1168 ambiguous_tel 230 ALIGNMENT 66 Y12-13m22.q1k chr06 861 1029 940 1110 F 169 81.66 1168 ambiguous_tel 176 ALIGNMENT 0 Y12-13m22.q1k chr05 849 62 575138 575137 C 788 0.00 1168 ambiguous_tel 144 ALIGNMENT 82 Y12-13m22.q1k chr02 849 1080 1881 2118 F 232 81.03 1168 ambiguous_tel 103 ALIGNMENT 0 Y12-13m22.q1k chr12 848 62 1069776 1069775 C 787 0.00 1168 ambiguous_tel 191 ALIGNMENT 0 Y12-13m22.q1k chr15 849 62 1089582 1089581 C 788 0.00 1168 ambiguous_tel 80 ALIGNMENT 90 Y12-13m22.q1k chr09 850 1070 1830 2055 F 221 82.81 1168 ambiguous_tel 89 ALIGNMENT 0 Y12-13m22.q1k chr12 62 849 7506 7505 F 788 0.00 1168 ambiguous_tel 147 ALIGNMENT 91 Y12-13m22.q1k chr16 1080 922 946330 946494 C 159 88.68 1168 ambiguous_tel 75 ALIGNMENT 131 Y12-13m22.q1k chr05 1087 850 575038 575281 C 238 87.39 1168 ambiguous_tel 26 ALIGNMENT 0 Y12-13m22.q1k chr05 852 62 575171 575170 C 791 0.00 1168 ambiguous_tel 130 ALIGNMENT 0 Y12-13m22.q1k chr02 62 848 1953 1952 F 787 0.00 1168 ambiguous_tel 86 ALIGNMENT 88 Y12-13m22.q1k chr12 853 1055 1902 2108 F 203 83.25 1168 ambiguous_tel 106 ALIGNMENT 0 Y12-13m22.q1k chr16 849 62 946099 946098 C 788 0.00 1168 ambiguous_tel 205 ALIGNMENT 0 Y12-13m22.q1k chr04 848 62 1530238 1530237 C 787 0.00 1168 ambiguous_tel 190 ALIGNMENT 0 Y12-13m22.q1k chr09 62 849 1758 1757 F 788 0.00 1168 ambiguous_tel 46 ALIGNMENT 0 Y12-13m22.q1k chr08 849 62 560590 560589 C 788 0.00 1168 ambiguous_tel 188 ALIGNMENT 68 Y12-13m22.q1k chr16 1087 853 945999 946239 C 235 78.72 1168 ambiguous_tel 135 ALIGNMENT 0 Y12-13m22.q1k chr04 860 62 1530154 1530153 C 799 0.00 1168 ambiguous_tel 217 ALIGNMENT 0 Y12-13m22.q1k chr12 62 852 7437 7436 F 791 0.00 1168 ambiguous_tel 113 ALIGNMENT 0 Y12-13m22.q1k chr05 885 62 575318 575317 C 824 0.00 1168 ambiguous_tel 93 ALIGNMENT 0 Y12-13m22.q1k chr02 62 849 1918 1917 F 788 0.00 1168 ambiguous_tel 91 ALIGNMENT 116 Y12-13m22.q1k chr16 1087 850 946107 946350 C 238 85.29 1168 ambiguous_tel 40 ALIGNMENT 0 Y12-13m22.q1k chr12 848 62 1069668 1069667 C 787 0.00 1168 ambiguous_tel 237 ALIGNMENT 23 Y12-13m22.q1k chr09 861 891 2021 2051 F 31 93.55 1168 ambiguous_tel 250 ALIGNMENT 0 Y12-13m22.q1k chr16 993 62 946495 946494 C 932 0.00 1168 ambiguous_tel 166 ALIGNMENT 0 Y12-13m22.q1k chr04 852 62 1530342 1530341 C 791 0.00 1168 ambiguous_tel 139 ALIGNMENT 0 Y12-13m22.q1k chr07 848 62 1089144 1089143 C 787 0.00 1168 ambiguous_tel 214 ALIGNMENT 0 Y12-13m22.q1k chr12 62 852 1902 1901 F 791 0.00 1168 ambiguous_tel 106 ALIGNMENT 138 Y12-13m22.q1k chr10 886 1146 1669 1937 F 261 86.21 1168 ambiguous_tel 21 ALIGNMENT 68 Y12-13m22.q1k chr12 853 1087 1938 2178 F 235 78.72 1168 ambiguous_tel 131 ALIGNMENT 997 Y12-13m23.q1k chr02 1157 37 508368 509486 C 1121 97.68 1157 accept 0 ALIGNMENT 1013 Y12-13m23.p1k chr02 23 1226 505330 506551 F 1204 96.18 1300 accept 0 ALIGNMENT 989 Y12-13m24.q1k chr08 1156 34 152968 154086 C 1123 97.24 1165 accept 0 ALIGNMENT 945 Y12-13m24.p1k chr08 18 1104 149936 151007 F 1087 97.52 1370 accept 0 ALIGNMENT 45 Y12-13n02.q1k chr16 745 860 769200 769314 F 116 80.17 1299 reject_low 1 ALIGNMENT 0 Y12-13n02.q1k chr16 138 744 769200 769199 F 607 0.00 1299 reject_low 1 ALIGNMENT 42 Y12-13n02.q1k chr12 857 745 875364 875475 C 113 79.65 1299 reject_low 2 ALIGNMENT 660 Y12-13n02.p1k chr04 25 1078 355238 356290 F 1054 88.61 1340 accept 0 ALIGNMENT 521 Y12-13n02.q1k chr04 1009 35 359418 360384 C 975 85.74 1299 accept 0 ALIGNMENT 0 Y12-13n02.q1k chr12 744 138 875476 875475 C 607 0.00 1299 reject_low 2 ALIGNMENT 45 Y12-13n03.p1k chr14 509 339 519164 519336 C 171 78.36 1364 reject_low 9 ALIGNMENT 0 Y12-13n03.p1k chr14 510 895 96941 96940 F 386 0.00 1364 reject_low 15 ALIGNMENT 0 Y12-13n03.p1k chr03 338 62 84241 84240 C 277 0.00 1364 reject_low 10 ALIGNMENT 0 Y12-13n03.p1k chr15 62 353 113467 113466 F 292 0.00 1364 reject_low 17 ALIGNMENT 0 Y12-13n03.p1k chr16 895 401 776195 776194 C 495 0.00 1364 reject_low 16 ALIGNMENT 52 Y12-13n03.p1k chr07 467 277 327951 328139 C 191 80.63 1364 reject_low 4 ALIGNMENT 82 Y12-13n03.p1k chr11 282 465 313351 313534 F 184 84.24 1364 reject_low 2 ALIGNMENT 0 Y12-13n03.p1k chr04 62 281 434524 434523 F 220 0.00 1364 reject_low 1 ALIGNMENT 42 Y12-13n03.p1k chr03 509 339 84068 84240 C 171 77.78 1364 reject_low 10 ALIGNMENT 40 Y12-13n03.p1k chr05 282 509 443498 443729 F 228 76.32 1364 reject_low 7 ALIGNMENT 0 Y12-13n03.p1k chr14 338 62 519337 519336 C 277 0.00 1364 reject_low 9 ALIGNMENT 0 Y12-13n03.p1k chr12 488 895 1052607 1052606 F 408 0.00 1364 reject_low 11 ALIGNMENT 47 Y12-13n03.p1k chr07 339 510 111337 111510 F 172 78.49 1364 reject_low 6 ALIGNMENT 0 Y12-13n03.p1k chr04 466 895 434707 434706 F 430 0.00 1364 reject_low 1 ALIGNMENT 0 Y12-13n03.p1k chr11 62 281 313351 313350 F 220 0.00 1364 reject_low 2 ALIGNMENT 0 Y12-13n03.p1k chr15 895 415 354775 354774 C 481 0.00 1364 reject_low 12 ALIGNMENT 0 Y12-13n03.p1k chr08 510 895 543941 543940 F 386 0.00 1364 reject_low 13 ALIGNMENT 0 Y12-13n03.p1k chr15 510 895 113625 113624 F 386 0.00 1364 reject_low 17 ALIGNMENT 0 Y12-13n03.p1k chr03 895 477 149514 149513 C 419 0.00 1364 reject_low 5 ALIGNMENT 45 Y12-13n03.p1k chr04 509 339 986792 986964 C 171 78.36 1364 reject_low 8 ALIGNMENT 51 Y12-13n03.p1k chr03 476 288 149513 149696 C 189 80.95 1364 reject_low 5 ALIGNMENT 28 Y12-13n03.p1k chr08 354 509 543784 543941 F 156 75.00 1364 reject_low 13 ALIGNMENT 0 Y12-13n03.p1k chr14 62 353 96784 96783 F 292 0.00 1364 reject_low 15 ALIGNMENT 25 Y12-13n03.p1k chr15 354 509 113467 113625 F 156 74.36 1364 reject_low 17 ALIGNMENT 46 Y12-13n03.p1k chr12 360 487 1052479 1052607 F 128 80.47 1364 reject_low 11 ALIGNMENT 0 Y12-13n03.p1k chr13 895 510 189753 189752 C 386 0.00 1364 reject_low 14 ALIGNMENT 0 Y12-13n03.p1k chr04 895 510 986793 986792 C 386 0.00 1364 reject_low 8 ALIGNMENT 1000 Y12-13n03.q1k chr08 1240 37 467859 469066 C 1204 95.85 1286 accept 0 ALIGNMENT 40 Y12-13n03.p1k chr15 414 339 354774 354849 C 76 86.84 1364 reject_low 12 ALIGNMENT 0 Y12-13n03.p1k chr05 510 895 443729 443728 F 386 0.00 1364 reject_low 7 ALIGNMENT 0 Y12-13n03.p1k chr16 281 62 776308 776307 C 220 0.00 1364 reject_low 16 ALIGNMENT 0 Y12-13n03.p1k chr13 353 62 189910 189909 C 292 0.00 1364 reject_low 14 ALIGNMENT 0 Y12-13n03.p1k chr11 466 895 313534 313533 F 430 0.00 1364 reject_low 2 ALIGNMENT 28 Y12-13n03.p1k chr13 509 354 189752 189909 C 156 75.00 1364 reject_low 14 ALIGNMENT 80 Y12-13n03.p1k chr08 476 282 466567 466758 C 195 85.13 1364 reject_low 3 ALIGNMENT 0 Y12-13n03.p1k chr08 895 477 466568 466567 C 419 0.00 1364 reject_low 3 ALIGNMENT 22 Y12-13n03.p1k chr16 400 282 776194 776307 C 119 79.83 1364 reject_low 16 ALIGNMENT 0 Y12-13n03.p1k chr08 62 353 543784 543783 F 292 0.00 1364 reject_low 13 ALIGNMENT 0 Y12-13n03.p1k chr08 281 62 466759 466758 C 220 0.00 1364 reject_low 3 ALIGNMENT 0 Y12-13n03.p1k chr12 62 359 1052479 1052478 F 298 0.00 1364 reject_low 11 ALIGNMENT 82 Y12-13n03.p1k chr04 282 465 434524 434707 F 184 84.24 1364 reject_low 1 ALIGNMENT 0 Y12-13n03.p1k chr15 338 62 354850 354849 C 277 0.00 1364 reject_low 12 ALIGNMENT 0 Y12-13n03.p1k chr07 511 895 111510 111509 F 385 0.00 1364 reject_low 6 ALIGNMENT 0 Y12-13n03.p1k chr04 338 62 986965 986964 C 277 0.00 1364 reject_low 8 ALIGNMENT 0 Y12-13n03.p1k chr03 287 62 149697 149696 C 226 0.00 1364 reject_low 5 ALIGNMENT 0 Y12-13n03.p1k chr07 62 338 111337 111336 F 277 0.00 1364 reject_low 6 ALIGNMENT 0 Y12-13n03.p1k chr03 895 510 84069 84068 C 386 0.00 1364 reject_low 10 ALIGNMENT 922 Y12-13n03.p1k chr08 20 1203 463659 464835 F 1184 94.59 1364 accept 0 ALIGNMENT 0 Y12-13n03.p1k chr14 895 510 519165 519164 C 386 0.00 1364 reject_low 9 ALIGNMENT 0 Y12-13n03.p1k chr07 276 62 328140 328139 C 215 0.00 1364 reject_low 4 ALIGNMENT 0 Y12-13n03.p1k chr07 895 468 327952 327951 C 428 0.00 1364 reject_low 4 ALIGNMENT 28 Y12-13n03.p1k chr14 354 509 96784 96941 F 156 75.00 1364 reject_low 15 ALIGNMENT 0 Y12-13n03.p1k chr05 62 281 443498 443497 F 220 0.00 1364 reject_low 7 ALIGNMENT 1051 Y12-13n04.p1k chr13 19 1234 886878 888108 F 1216 96.38 1362 accept 0 ALIGNMENT 974 Y12-13n04.q1k chr13 1144 36 888626 889748 C 1109 97.29 1265 accept 0 ALIGNMENT 929 Y12-13n05.q1k chr05 35 1130 152871 153949 F 1096 96.62 1312 accept 0 ALIGNMENT 861 Y12-13n05.p1k chr05 1171 16 155984 157141 C 1156 94.20 1386 accept 0 ALIGNMENT 703 Y12-13n06.p1k chr08 1273 346 213317 214255 C 928 94.50 1402 reject_low 2 ALIGNMENT 929 Y12-13n06.q1k chr08 36 1174 214943 216102 F 1139 96.49 1239 accept 1 ALIGNMENT 929 Y12-13n06.q1k chr08 36 1174 212945 214104 F 1139 96.49 1239 accept 0 ALIGNMENT 0 Y12-13n06.p1k chr08 345 62 214256 214255 C 284 0.00 1402 reject_low 2 ALIGNMENT 1006 Y12-13n06.p1k chr08 1273 23 215315 216576 C 1251 95.76 1402 accept 0,1 ALIGNMENT 1010 Y12-13n09.p1k chr09 1258 21 295035 296290 C 1238 95.72 1414 accept 0 ALIGNMENT 964 Y12-13n09.q1k chr09 26 1205 291839 293028 F 1180 94.92 1228 accept 0 ALIGNMENT 960 Y12-13n10.q1k chr05 32 1163 549555 550676 F 1132 97.00 1281 accept 0 ALIGNMENT 1016 Y12-13n10.p1k chr05 1204 27 553387 554578 C 1178 96.43 1450 accept 0 ALIGNMENT 532 Y12-13n12.p1k chr12 20 779 1003352 1004112 F 760 90.39 1446 reject_low 1 ALIGNMENT 434 Y12-13n12.p1k chr08 26 779 555202 555955 F 754 86.34 1446 reject_low 3 ALIGNMENT 0 Y12-13n12.p1k chr12 780 848 1004112 1004111 F 69 0.00 1446 reject_low 1 ALIGNMENT 0 Y12-13n12.p1k chr01 780 848 229296 229295 F 69 0.00 1446 reject_low 2 ALIGNMENT 994 Y12-13n12.q1k chr13 26 1198 158688 159853 F 1173 95.99 1243 accept 0 ALIGNMENT 453 Y12-13n12.p1k chr01 26 779 228539 229296 F 754 87.27 1446 reject_low 2 ALIGNMENT 0 Y12-13n12.p1k chr08 780 848 555955 555954 F 69 0.00 1446 reject_low 3 ALIGNMENT 1033 Y12-13n12.p1k chr13 1289 20 161699 162966 C 1270 95.04 1446 accept 0 ALIGNMENT 77 Y12-13n13.p1k chr05 383 303 438696 438776 C 81 98.77 1407 reject_low 13 ALIGNMENT 0 Y12-13n13.p1k chr12 62 303 687855 687854 F 242 0.00 1407 reject_low 11 ALIGNMENT 78 Y12-13n13.p1k chr08 303 384 85287 85368 F 82 98.78 1407 reject_low 10 ALIGNMENT 80 Y12-13n13.p1k chr05 384 304 469451 469531 C 81 100.00 1407 reject_low 9 ALIGNMENT 0 Y12-13n13.p1k chr10 806 384 378277 378276 C 423 0.00 1407 reject_low 8 ALIGNMENT 86 Y12-13n13.p1k chr13 298 384 586623 586709 F 87 100.00 1407 reject_low 4 ALIGNMENT 0 Y12-13n13.p1k chr07 535 62 811452 811451 C 474 0.00 1407 accept 0 ALIGNMENT 0 Y12-13n13.p1k chr13 62 297 586623 586622 F 236 0.00 1407 reject_low 4 ALIGNMENT 0 Y12-13n13.p1k chr15 387 806 663888 663887 F 420 0.00 1407 reject_low 7 ALIGNMENT 79 Y12-13n13.p1k chr12 304 383 687855 687934 F 80 100.00 1407 reject_low 11 ALIGNMENT 0 Y12-13n13.p1k chr10 301 62 378358 378357 C 240 0.00 1407 reject_low 8 ALIGNMENT 0 Y12-13n13.p1k chr07 385 806 412371 412370 F 422 0.00 1407 reject_low 14 ALIGNMENT 0 Y12-13n13.q1k chr07 687 819 807343 807342 F 133 0.00 1272 reject_low 3 ALIGNMENT 510 Y12-13n13.p1k chr07 1255 536 810731 811451 C 720 92.08 1407 accept 0 ALIGNMENT 0 Y12-13n13.p1k chr07 62 309 412297 412296 F 248 0.00 1407 reject_low 14 ALIGNMENT 80 Y12-13n13.p1k chr11 303 386 307782 307865 F 84 98.81 1407 reject_low 6 ALIGNMENT 20 Y12-13n13.q1k chr07 654 686 807311 807343 F 33 87.88 1272 reject_low 3 ALIGNMENT 0 Y12-13n13.p1k chr05 303 62 469532 469531 C 242 0.00 1407 reject_low 9 ALIGNMENT 970 Y12-13n13.q1k chr07 33 1173 806774 807893 F 1141 96.58 1272 accept 0 ALIGNMENT 0 Y12-13n13.p1k chr13 384 806 420660 420659 F 423 0.00 1407 reject_low 12 ALIGNMENT 0 Y12-13n13.q1k chr07 62 653 807311 807310 F 592 0.00 1272 reject_low 3 ALIGNMENT 0 Y12-13n13.p1k chr13 62 302 372437 372436 F 241 0.00 1407 reject_low 2 ALIGNMENT 0 Y12-13n13.p1k chr13 62 304 420582 420581 F 243 0.00 1407 reject_low 12 ALIGNMENT 0 Y12-13n13.p1k chr08 62 302 85287 85286 F 241 0.00 1407 reject_low 10 ALIGNMENT 457 Y12-13n13.p1k chr07 541 22 823329 823847 C 520 97.31 1407 reject_low 1 ALIGNMENT 0 Y12-13n13.p1k chr11 62 302 307782 307781 F 241 0.00 1407 reject_low 6 ALIGNMENT 0 Y12-13n13.p1k chr05 302 62 438777 438776 C 241 0.00 1407 reject_low 13 ALIGNMENT 0 Y12-13n13.p1k chr07 387 806 73904 73903 F 420 0.00 1407 reject_low 5 ALIGNMENT 0 Y12-13n13.p1k chr08 385 806 85368 85367 F 422 0.00 1407 reject_low 10 ALIGNMENT 0 Y12-13n13.p1k chr07 62 302 73821 73820 F 241 0.00 1407 reject_low 5 ALIGNMENT 75 Y12-13n13.p1k chr07 310 384 412297 412371 F 75 100.00 1407 reject_low 14 ALIGNMENT 0 Y12-13n13.p1k chr05 806 385 469452 469451 C 422 0.00 1407 reject_low 9 ALIGNMENT 79 Y12-13n13.p1k chr15 305 386 663807 663888 F 82 98.78 1407 reject_low 7 ALIGNMENT 0 Y12-13n13.p1k chr05 806 384 438697 438696 C 423 0.00 1407 reject_low 13 ALIGNMENT 0 Y12-13n13.p1k chr12 384 806 687934 687933 F 423 0.00 1407 reject_low 11 ALIGNMENT 0 Y12-13n13.p1k chr15 62 304 663807 663806 F 243 0.00 1407 reject_low 7 ALIGNMENT 0 Y12-13n13.p1k chr11 806 384 379324 379323 C 423 0.00 1407 reject_low 15 ALIGNMENT 0 Y12-13n13.p1k chr11 387 806 307865 307864 F 420 0.00 1407 reject_low 6 ALIGNMENT 79 Y12-13n13.p1k chr13 305 383 420582 420660 F 79 100.00 1407 reject_low 12 ALIGNMENT 0 Y12-13n13.p1k chr13 402 806 372536 372535 F 405 0.00 1407 reject_low 2 ALIGNMENT 0 Y12-13n13.p1k chr07 806 542 823330 823329 C 265 0.00 1407 reject_low 1 ALIGNMENT 74 Y12-13n13.p1k chr11 383 310 379323 379396 C 74 100.00 1407 reject_low 15 ALIGNMENT 0 Y12-13n13.p1k chr11 309 62 379397 379396 C 248 0.00 1407 reject_low 15 ALIGNMENT 0 Y12-13n13.p1k chr13 385 806 586709 586708 F 422 0.00 1407 reject_low 4 ALIGNMENT 80 Y12-13n13.p1k chr07 303 386 73821 73904 F 84 98.81 1407 reject_low 5 ALIGNMENT 82 Y12-13n13.p1k chr13 303 401 372437 372536 F 99 94.95 1407 reject_low 2 ALIGNMENT 78 Y12-13n13.p1k chr10 383 302 378276 378357 C 82 98.78 1407 reject_low 8 ALIGNMENT 886 Y12-13n14.p1k chr16 19 1126 459464 460592 F 1108 95.22 1344 accept 0 ALIGNMENT 971 Y12-13n14.q1k chr16 1178 29 461536 462681 C 1150 96.17 1241 accept 0 ALIGNMENT 1054 Y12-13n15.q1k chr07 1246 48 960016 961219 C 1199 97.00 1276 accept 0 ALIGNMENT 0 Y12-13n15.p1k chr13 62 740 587686 587685 F 679 0.00 1409 reject_low 2 ALIGNMENT 23 Y12-13n15.p1k chr13 741 793 587686 587738 F 53 94.34 1409 reject_low 2 ALIGNMENT 30 Y12-13n15.p1k chr04 740 825 390424 390509 F 86 89.53 1409 reject_low 1 ALIGNMENT 988 Y12-13n15.p1k chr07 18 1268 956747 958004 F 1251 94.80 1409 accept 0 ALIGNMENT 0 Y12-13n15.p1k chr04 62 739 390424 390423 F 678 0.00 1409 reject_low 1 ALIGNMENT 0 Y12-13n15.p1k chr04 826 865 390509 390508 F 40 0.00 1409 reject_low 1 ALIGNMENT 0 Y12-13n15.p1k chr13 794 865 587738 587737 F 72 0.00 1409 reject_low 2 ALIGNMENT 885 Y12-13n16.q1k chr05 1153 28 240889 242042 C 1126 94.40 1260 accept 0 ALIGNMENT 1080 Y12-13n16.p1k chr05 20 1286 237372 238641 F 1267 96.21 1438 accept 0 ALIGNMENT 927 Y12-13n19.q1k chr14 1174 34 722161 723303 C 1141 94.48 1242 accept 0 ALIGNMENT 695 Y12-13n19.p1k chr14 20 957 719368 720302 F 938 92.32 1393 accept 0 ALIGNMENT 948 Y12-13n23.q1k chr16 1163 33 869184 870300 C 1131 96.02 1180 accept 0 ALIGNMENT 1004 Y12-13n23.p1k chr16 19 1279 866335 867600 F 1261 94.61 1319 accept 0 ALIGNMENT 1011 Y12-13n24.p1k chr04 17 1270 1246666 1247924 F 1254 95.06 1329 accept 0 ALIGNMENT 972 Y12-13n24.q1k chr04 1103 34 1250674 1251735 C 1070 97.76 1185 accept 0 ALIGNMENT 1002 Y12-13o01.p1k chr16 29 1196 835497 836665 F 1168 96.40 1307 accept 0 ALIGNMENT 816 Y12-13o01.q1k chr16 950 33 840208 841110 C 918 97.39 1228 accept 0 ALIGNMENT 266 Y12-13o02.p1k chr12 20 292 468657 468930 F 273 99.63 1373 reject_low 2 ALIGNMENT 119 Y12-13o02.p1k chr12 174 292 485696 485814 F 119 100.00 1373 reject_low 6 ALIGNMENT 901 Y12-13o02.q1k chr12 1046 29 463466 464480 C 1018 97.15 1190 accept 0 ALIGNMENT 119 Y12-13o02.p1k chr12 174 292 482044 482162 F 119 100.00 1373 reject_low 5 ALIGNMENT 0 Y12-13o02.p1k chr12 293 824 485814 485813 F 532 0.00 1373 reject_low 6 ALIGNMENT 128 Y12-13o02.p1k chr12 174 307 489348 489481 F 134 98.51 1373 reject_low 3 ALIGNMENT 0 Y12-13o02.p1k chr12 293 824 472582 472581 F 532 0.00 1373 reject_low 4 ALIGNMENT 0 Y12-13o02.p1k chr12 62 173 489348 489347 F 112 0.00 1373 reject_low 3 ALIGNMENT 0 Y12-13o02.p1k chr12 62 173 482044 482043 F 112 0.00 1373 reject_low 5 ALIGNMENT 734 Y12-13o02.p1k chr12 20 1167 459520 460693 F 1148 90.59 1373 accept 0 ALIGNMENT 901 Y12-13o02.q1k chr12 1046 29 454329 455343 C 1018 97.15 1190 reject_low 1 ALIGNMENT 0 Y12-13o02.p1k chr12 293 824 482162 482161 F 532 0.00 1373 reject_low 5 ALIGNMENT 0 Y12-13o02.p1k chr12 62 173 485696 485695 F 112 0.00 1373 reject_low 6 ALIGNMENT 0 Y12-13o02.p1k chr12 308 824 489481 489480 F 517 0.00 1373 reject_low 3 ALIGNMENT 119 Y12-13o02.p1k chr12 174 292 472464 472582 F 119 100.00 1373 reject_low 4 ALIGNMENT 0 Y12-13o02.p1k chr12 293 824 468930 468929 F 532 0.00 1373 reject_low 2 ALIGNMENT 0 Y12-13o02.p1k chr12 62 173 472464 472463 F 112 0.00 1373 reject_low 4 ALIGNMENT 34 Y12-13o03.q1k chr12 321 208 148363 148476 C 114 77.19 1254 reject_low 1 ALIGNMENT 0 Y12-13o03.q1k chr12 207 118 148477 148566 C 90 0.00 1254 reject_low 1 ALIGNMENT 29 Y12-13o03.q1k chr12 707 602 147983 148088 C 106 77.36 1254 reject_low 1 ALIGNMENT 0 Y12-13o03.q1k chr12 770 708 147984 147983 C 63 0.00 1254 reject_low 1 ALIGNMENT 878 Y12-13o03.q1k chr11 30 1058 441591 442603 F 1029 96.70 1254 accept 0 ALIGNMENT 22 Y12-13o03.q1k chr12 117 46 148567 148638 C 72 77.78 1254 reject_low 1 ALIGNMENT 0 Y12-13o03.q1k chr12 601 322 148089 148362 C 280 0.00 1254 reject_low 1 ALIGNMENT 778 Y12-13o03.p1k chr11 955 2 444532 445475 C 954 95.49 1237 accept 0 ALIGNMENT 978 Y12-13o04.p1k chr14 1257 18 278373 279607 C 1240 94.76 1370 accept 0 ALIGNMENT 854 Y12-13o04.q1k chr14 27 975 274060 274999 F 949 98.10 1281 accept 0 ALIGNMENT 835 Y12-13o05.p1k chr13 19 1180 187565 188737 F 1162 91.91 1373 ambiguous_trans 22 ALIGNMENT 979 Y12-13o05.p1k chr07 1180 19 818744 819916 C 1162 96.04 1373 ambiguous_trans 4 ALIGNMENT 858 Y12-13o05.p1k chr07 19 1219 539165 540380 F 1201 92.01 1373 ambiguous_trans 10 ALIGNMENT 799 Y12-13o05.p1k chr16 1180 19 805989 807161 C 1162 90.88 1373 ambiguous_trans 25 ALIGNMENT 855 Y12-13o05.p1k chr12 19 1219 654225 655440 F 1201 91.92 1373 ambiguous_trans 13 ALIGNMENT 961 Y12-13o05.p1k chr02 19 1180 262971 264146 F 1162 95.61 1373 ambiguous_trans 5 ALIGNMENT 955 Y12-13o05.p1k chr08 1180 19 544956 546128 C 1162 95.35 1373 ambiguous_trans 8 ALIGNMENT 838 Y12-13o05.p1k chr13 1180 19 374048 375220 C 1162 92.00 1373 ambiguous_trans 20 ALIGNMENT 966 Y12-13o05.p1k chr14 19 1076 522543 523602 F 1058 98.11 1373 ambiguous_trans 6 ALIGNMENT 849 Y12-13o05.p1k chr16 19 1162 59852 61004 F 1144 92.66 1373 ambiguous_trans 15 ALIGNMENT 846 Y12-13o05.p1k chr15 19 1162 121103 122255 F 1144 92.57 1373 ambiguous_trans 19 ALIGNMENT 955 Y12-13o05.p1k chr05 1180 19 493843 495015 C 1162 95.35 1373 ambiguous_trans 7 ALIGNMENT 846 Y12-13o05.p1k chr13 19 1162 199732 200884 F 1144 92.57 1373 ambiguous_trans 18 ALIGNMENT 846 Y12-13o05.p1k chr05 1162 19 444764 445916 C 1144 92.57 1373 ambiguous_trans 17 ALIGNMENT 858 Y12-13o05.p1k chr10 19 1219 481362 482577 F 1201 92.01 1373 ambiguous_trans 11 ALIGNMENT 844 Y12-13o05.p1k chr16 1180 19 851977 853149 C 1162 92.17 1373 ambiguous_trans 16 ALIGNMENT 811 Y12-13o05.p1k chr10 19 1180 475778 476950 F 1162 91.22 1373 ambiguous_trans 24 ALIGNMENT 835 Y12-13o05.p1k chr04 19 1180 1099163 1100335 F 1162 91.91 1373 ambiguous_trans 21 ALIGNMENT 862 Y12-13o05.p1k chr15 19 1180 598216 599388 F 1162 92.69 1373 ambiguous_trans 14 ALIGNMENT 1005 Y12-13o05.p1k chr02 19 1219 224437 225652 F 1201 96.00 1373 ambiguous_trans 1 ALIGNMENT 835 Y12-13o05.p1k chr16 19 1180 847812 848984 F 1162 91.91 1373 ambiguous_trans 23 ALIGNMENT 855 Y12-13o05.p1k chr04 19 1219 1210091 1211306 F 1201 91.92 1373 ambiguous_trans 12 ALIGNMENT 969 Y12-13o05.p1k chr14 1219 19 97913 99128 C 1201 95.00 1373 ambiguous_trans 3 ALIGNMENT 946 Y12-13o05.p1k chr12 1180 19 216433 217605 C 1162 95.09 1373 ambiguous_trans_ua 9 ALIGNMENT 996 Y12-13o05.q1k chr04 27 1207 616217 617393 F 1181 96.19 1242 accept 0 ALIGNMENT 1002 Y12-13o05.p1k chr13 1219 19 358307 359522 C 1201 95.92 1373 ambiguous_trans 2 ALIGNMENT 1008 Y12-13o06.p1k chr10 1201 17 209619 210808 C 1185 95.86 1403 accept 0 ALIGNMENT 962 Y12-13o06.q1k chr10 30 1235 205155 206363 F 1206 94.94 1240 accept 0 ALIGNMENT 955 Y12-13o07.p1k chr04 48 1217 855404 856585 F 1170 94.87 1357 accept 0 ALIGNMENT 951 Y12-13o07.q1k chr04 1153 32 859171 860284 C 1122 96.43 1267 accept 0 ALIGNMENT 208 Y12-13o08.p1k chr14 741 178 425950 426506 C 564 80.50 1533 reject_low 1 ALIGNMENT 349 Y12-13o08.p1k chr15 33 741 523135 523830 F 709 85.05 1533 accept 0 ALIGNMENT 894 Y12-13o10.p1k chr12 1062 16 531382 532446 C 1047 96.47 1349 accept 0 ALIGNMENT 917 Y12-13o10.q1k chr12 29 1097 527740 528799 F 1069 97.01 1254 accept 0 ALIGNMENT 991 Y12-13o11.p1k chr08 16 1213 284431 285638 F 1198 95.58 1376 accept 0 ALIGNMENT 0 Y12-13o11.q1k chr04 794 250 1162950 1162949 C 545 0.00 1220 reject_low 1 ALIGNMENT 106 Y12-13o11.q1k chr04 249 30 1162949 1163168 C 220 83.18 1220 reject_low 1 ALIGNMENT 0 Y12-13o11.q1k chr08 794 230 287104 287103 C 565 0.00 1220 reject_low 2 ALIGNMENT 891 Y12-13o11.q1k chr08 1119 30 290058 291135 C 1090 95.87 1220 accept 0 ALIGNMENT 92 Y12-13o11.q1k chr08 229 30 287103 287303 C 200 83.00 1220 reject_low 2 ALIGNMENT 1049 Y12-13o13.p1k chr04 21 1273 138835 140083 F 1253 96.01 1395 accept 0 ALIGNMENT 945 Y12-13o13.q1k chr04 1143 39 142004 143095 C 1105 96.83 1222 accept 0 ALIGNMENT 810 Y12-13o15.q1k chr04 1056 34 677774 678793 C 1023 93.94 1247 accept 0 ALIGNMENT 1033 Y12-13o15.p1k chr04 31 1299 674368 675649 F 1269 94.64 1358 accept 0 ALIGNMENT 717 Y12-13o16.q1k chr04 29 824 16519 17314 F 796 96.86 1250 reject_low 3 ALIGNMENT 747 Y12-13o16.q1k chr06 29 824 13244 14039 F 796 98.12 1250 accept 0 ALIGNMENT 940 Y12-13o16.p1k chr06 1091 19 18050 19117 C 1073 97.11 1367 accept 0 ALIGNMENT 852 Y12-13o16.q1k chr10 1025 29 728208 729196 C 997 95.99 1250 reject_low 1 ALIGNMENT 820 Y12-13o16.q1k chr14 29 913 15147 16030 F 885 97.85 1250 reject_low 2 ALIGNMENT 843 Y12-13o17.q1k chr01 1033 28 50902 51895 C 1006 96.42 1263 accept 0 ALIGNMENT 989 Y12-13o17.p1k chr01 17 1203 46991 48173 F 1187 95.20 1365 accept 0 ALIGNMENT 494 Y12-13o18.p1k chr16 20 977 460146 461096 F 958 85.39 1395 accept 0 ALIGNMENT 389 Y12-13o18.q1k chr16 735 26 464342 465035 C 710 86.76 1278 accept 0 ALIGNMENT 897 Y12-13o19.q1k chr03 34 1119 207289 208359 F 1086 96.13 1277 accept 0 ALIGNMENT 1022 Y12-13o19.p1k chr03 1163 19 212171 213329 C 1145 96.77 1342 accept 0 ALIGNMENT 950 Y12-13o20.p1k chr14 1338 17 231813 233118 C 1322 92.28 1392 accept_chi 0 ALIGNMENT 819 Y12-13o20.q1k chr15 28 1078 980928 981974 F 1051 94.67 1285 accept_chi 1 ALIGNMENT 0 Y12-13o21.q1k chr12 107 562 451419 451418 F 456 0.00 1220 reject_low 1 ALIGNMENT 684 Y12-13o21.q1k chr12 36 1108 460013 461105 F 1073 90.59 1220 accept 0 ALIGNMENT 849 Y12-13o21.p1k chr12 973 22 454001 454942 C 952 97.58 1395 reject_low 1 ALIGNMENT 329 Y12-13o21.q1k chr12 563 1108 451419 451968 F 546 89.74 1220 reject_low 1 ALIGNMENT 849 Y12-13o21.p1k chr12 973 22 463138 464079 C 952 97.58 1395 accept 0 ALIGNMENT 878 Y12-13o22.p1k chr04 1103 16 477378 478453 C 1088 95.13 1387 accept 0 ALIGNMENT 902 Y12-13o22.q1k chr04 30 1074 473767 474800 F 1045 97.32 1259 accept 0 ALIGNMENT 1000 Y12-13o23.p1k chr13 1294 13 231982 233252 C 1282 94.38 1315 accept 0 ALIGNMENT 1004 Y12-13o23.q1k chr13 37 1125 231754 232839 F 1089 98.35 1152 accept 0 ALIGNMENT 972 Y12-13o24.p1k chr12 33 1236 466750 467960 F 1204 95.02 1312 reject_low 2 ALIGNMENT 945 Y12-13o24.q1k chr12 1090 29 460612 461670 C 1062 97.08 1141 accept 0 ALIGNMENT 981 Y12-13o24.p1k chr12 33 1308 457613 458895 F 1276 93.81 1312 accept 0 ALIGNMENT 945 Y12-13o24.q1k chr12 1090 29 451475 452533 C 1062 97.08 1141 reject_low 1 ALIGNMENT 0 Y12-13o24.q1k chr12 819 777 489755 489754 C 43 0.00 1141 reject_low 3 ALIGNMENT 719 Y12-13o24.q1k chr12 776 29 489754 490501 C 748 98.93 1141 reject_low 3 ALIGNMENT 940 Y12-13p01.q1k chr07 1127 31 446159 447241 C 1097 96.63 1181 accept 0 ALIGNMENT 845 Y12-13p01.p1k chr07 20 1108 441394 442449 F 1089 94.58 1344 accept 0 ALIGNMENT 930 Y12-13p02.q1k chr16 1107 31 231416 232492 C 1077 97.03 1167 accept 0 ALIGNMENT 985 Y12-13p02.p1k chr16 28 1107 227683 228765 F 1080 97.50 1311 accept 0 ALIGNMENT 1011 Y12-13p03.q1k chr11 34 1186 46976 48120 F 1153 97.05 1226 accept 0 ALIGNMENT 1017 Y12-13p03.p1k chr11 1219 18 51147 52360 C 1202 96.84 1331 accept 0 ALIGNMENT 992 Y12-13p04.p1k chr16 1182 19 876505 877684 C 1164 96.65 1334 accept_chi 1 ALIGNMENT 1017 Y12-13p04.q1k chr10 32 1212 110507 111688 F 1181 96.61 1214 accept_chi 0 ALIGNMENT 0 Y12-13p05.p1k chr04 213 62 927582 927581 C 152 0.00 1369 reject_low 1 ALIGNMENT 972 Y12-13p05.q1k chr04 29 1127 923405 924495 F 1099 97.54 1260 accept 0 ALIGNMENT 33 Y12-13p05.p1k chr04 248 214 927547 927581 C 35 100.00 1369 reject_low 1 ALIGNMENT 0 Y12-13p05.p1k chr04 776 249 927548 927547 C 528 0.00 1369 reject_low 1 ALIGNMENT 935 Y12-13p05.p1k chr04 1180 13 926640 927836 C 1168 94.52 1369 accept 0 ALIGNMENT 1071 Y12-13p06.q1k chr04 30 1233 827019 828223 F 1204 97.43 1234 accept 0 ALIGNMENT 962 Y12-13p06.p1k chr04 1136 13 830579 831718 C 1124 96.89 1351 accept 0 ALIGNMENT 953 Y12-13p07.p1k chr08 23 1145 96959 98072 F 1123 96.35 1395 accept 0 ALIGNMENT 1046 Y12-13p07.q1k chr08 1250 36 101724 102941 C 1215 96.54 1250 accept 0 ALIGNMENT 1030 Y12-13p08.q1k chr04 1256 34 261864 263069 C 1223 96.40 1270 accept 0 ALIGNMENT 990 Y12-13p08.p1k chr04 18 1189 257757 258946 F 1172 96.25 1348 accept 0 ALIGNMENT 1015 Y12-13p09.q1k chr13 29 1218 312977 314163 F 1190 96.30 1221 accept 0 ALIGNMENT 993 Y12-13p09.p1k chr13 1245 15 315750 316969 C 1231 94.88 1424 accept 0 ALIGNMENT 961 Y12-13p10.p1k chr12 1282 16 462544 463813 C 1267 93.21 1389 accept 0 ALIGNMENT 990 Y12-13p10.q1k chr12 30 1242 466740 467946 F 1213 95.47 1248 reject_low 1 ALIGNMENT 960 Y12-13p10.p1k chr12 1258 16 453433 454676 C 1243 93.64 1389 reject_low 2 ALIGNMENT 990 Y12-13p10.q1k chr12 30 1242 457603 458809 F 1213 95.47 1248 accept 0 ALIGNMENT 951 Y12-13p11.p1k chr08 23 1077 336062 337123 F 1055 97.54 1348 accept 0 ALIGNMENT 905 Y12-13p11.q1k chr08 1058 29 337912 338931 C 1030 98.06 1220 accept 0 ALIGNMENT 72 Y12-13p13.q1k chr10 33 138 608667 608773 F 106 89.62 1234 reject_low 1 ALIGNMENT 0 Y12-13p13.q1k chr10 139 750 608773 608772 F 612 0.00 1234 reject_low 1 ALIGNMENT 830 Y12-13p13.q1k chr16 33 1064 654736 655758 F 1032 95.83 1234 accept 0 ALIGNMENT 982 Y12-13p13.p1k chr16 1181 18 657932 659092 C 1164 96.05 1378 accept 0 ALIGNMENT 769 Y12-13p15.p1k chr10 935 19 664884 665788 C 917 96.40 1431 accept 0 ALIGNMENT 989 Y12-13p16.p1k chr04 19 1341 481616 482947 F 1323 92.97 1376 accept 0 ALIGNMENT 929 Y12-13p16.q1k chr04 1077 32 485183 486216 C 1046 97.71 1252 accept 0 ALIGNMENT 975 Y12-13p18.q1k chr09 1200 29 76485 77644 C 1172 95.90 1229 accept 0 ALIGNMENT 934 Y12-13p18.p1k chr09 15 1129 73513 74645 F 1115 96.32 1303 accept 0 ALIGNMENT 957 Y12-13p19.p1k chr13 19 1197 203605 204762 F 1179 95.42 1400 accept 0 ALIGNMENT 936 Y12-13p19.q1k chr13 1127 17 206867 207964 C 1111 96.31 1263 accept 0 ALIGNMENT 22 Y12-13p20.p1k chr15 91 35 236965 237021 C 57 84.21 1439 reject_low 1 ALIGNMENT 0 Y12-13p20.p1k chr15 696 92 236966 236965 C 605 0.00 1439 reject_low 1 ALIGNMENT 823 Y12-13p20.p1k chr15 941 16 533640 534555 C 926 97.62 1439 accept 0 ALIGNMENT 814 Y12-13p20.q1k chr15 7 937 530299 531216 F 931 97.74 1276 accept 0 ALIGNMENT 827 Y12-13p23.q1k chr02 11 987 355065 356031 F 977 96.52 1168 accept_chi 1 ALIGNMENT 926 Y12-13p23.p1k chr11 1130 18 458434 459531 C 1113 96.41 1345 accept_chi 0 ALIGNMENT 892 Y12-13p24.q1k chr11 1051 35 447128 448135 C 1017 98.23 1201 accept 0 ALIGNMENT 876 Y12-13p24.p1k chr11 20 1063 443916 444962 F 1044 96.26 1300 accept 0 ALIGNMENT 903 Y12-14a01.p1k chr16 1050 14 86319 87348 C 1037 96.82 1061 accept 0 ALIGNMENT 1066 Y12-14a01.q1k chr16 36 1240 82306 83524 F 1205 96.76 1376 accept 0 ALIGNMENT 795 Y12-14a02.p1k chr05 4 912 338929 339830 F 909 97.69 1137 accept 0 ALIGNMENT 588 Y12-14a03.q1k chr14 747 35 382161 382872 C 713 95.93 1352 accept 0 ALIGNMENT 986 Y12-14a03.p1k chr14 19 1093 376377 377454 F 1075 97.40 1093 accept 0 ALIGNMENT 993 Y12-14a05.p1k chr15 1114 19 844021 845118 C 1096 98.54 1118 accept 0 ALIGNMENT 772 Y12-14a05.q1k chr15 32 896 840501 841360 F 865 97.57 1445 accept 0 ALIGNMENT 729 Y12-14a06.p1k chr10 4 790 30943 31726 F 787 98.98 1254 accept 0 ALIGNMENT 800 Y12-14a06.q1k chr10 897 29 34082 34954 C 869 98.50 1387 accept 0 ALIGNMENT 962 Y12-14a07.p1k chr12 1091 21 352353 353427 C 1071 97.85 1092 accept 0 ALIGNMENT 817 Y12-14a07.q1k chr12 33 971 349431 350363 F 939 97.23 1449 accept 0 ALIGNMENT 0 Y12-14a08.p1k chr09 303 300 439194 439377 C 4 0.00 1194 reject_low 1 ALIGNMENT 99 Y12-14a08.p1k chr03 484 307 315727 315904 C 178 88.20 1194 reject_low 14 ALIGNMENT 96 Y12-14a08.p1k chr12 304 484 11957 12137 F 181 87.85 1194|2,0 reject_low 16 ALIGNMENT 0 Y12-14a08.p1k chr10 62 86 3 2 F 25 0.00 1194 reject_low 15 ALIGNMENT 0 Y12-14a08.p1k chr13 870 437 923536 923535 C 434 0.00 1194 reject_low 19 ALIGNMENT 0 Y12-14a08.p1k chr08 235 137 556483 556835 C 99 0.00 1194 reject_low 20 ALIGNMENT 23 Y12-14a08.p1k chr10 87 142 3 58 F 56 98.21 1194 reject_low 15 ALIGNMENT 0 Y12-14a08.p1k chr07 485 870 833 832 F 386 0.00 1194 reject_low 12 ALIGNMENT 0 Y12-14a08.p1k chr07 306 305 477 654 F 0 0.00 1194 reject_low 12 ALIGNMENT 0 Y12-14a08.p1k chr02 304 305 812501 812676 C 0 0.00 1194 reject_low 11 ALIGNMENT 117 Y12-14a08.p1k chr07 304 484 653 833 F 181 91.16 1194|2,0 reject_low 12 ALIGNMENT 61 Y12-14a08.p1k chr12 206 306 11681 11785 F 101 89.11 1194|1,1 reject_low 16 ALIGNMENT 0 Y12-14a08.p1k chr13 205 143 923944 924303 C 63 0.00 1194 reject_low 19 ALIGNMENT 0 Y12-14a08.p1k chr13 305 304 6041 6216 F 0 0.00 1194 reject_low 5 ALIGNMENT 869 Y12-14a08.q1k chr05 1068 36 10059 11105 C 1033 96.32 1385 reject_bad_break 0 ALIGNMENT 0 Y12-14a08.p1k chr06 307 306 5230 5404 F 0 0.00 1194 reject_low 2 ALIGNMENT 26 Y12-14a08.p1k chr05 188 229 6341 6383 F 42 92.86 1194 reject_bad_break 0 ALIGNMENT 0 Y12-14a08.p1k chr12 306 305 11785 11958 F 0 0.00 1194 reject_low 16 ALIGNMENT 0 Y12-14a08.p1k chr03 870 485 315728 315727 C 386 0.00 1194 reject_low 14 ALIGNMENT 0 Y12-14a08.p1k chr08 300 306 5191 5378 F 7 0.00 1194 reject_low 3 ALIGNMENT 35 Y12-14a08.p1k chr08 306 236 556409 556482 C 71 85.92 1194|1,0 reject_low 20 ALIGNMENT 0 Y12-14a08.p1k chr14 303 300 783407 783591 C 4 0.00 1194 reject_low 17 ALIGNMENT 20 Y12-14a08.p1k chr14 199 93 784224 784330 C 107 92.52 1194 reject_low 10 ALIGNMENT 44 Y12-14a08.p1k chr07 218 306 385 477 F 89 85.39 1194|0,1 reject_low 12 ALIGNMENT 0 Y12-14a08.p1k chr05 62 187 6341 6340 F 126 0.00 1194 reject_bad_break 0 ALIGNMENT 0 Y12-14a08.p1k chr08 751 870 5820 5819 F 120 0.00 1194 reject_low 3 ALIGNMENT 47 Y12-14a08.p1k chr02 305 211 812676 812771 C 95 86.32 1194|1,0 reject_low 11 ALIGNMENT 21 Y12-14a08.p1k chr13 142 23 924304 924426 C 120 92.50 1194 reject_low 19 ALIGNMENT 0 Y12-14a08.p1k chr12 870 485 1064227 1064226 C 386 0.00 1194 reject_low 13 ALIGNMENT 0 Y12-14a08.p1k chr06 62 206 5125 5124 F 145 0.00 1194 reject_low 2 ALIGNMENT 0 Y12-14a08.p1k chr10 143 210 59 7364 F 68 0.00 1194 reject_low 15 ALIGNMENT 61 Y12-14a08.p1k chr13 436 304 923535 923665 C 133 86.47 1194|0,2 reject_low 19 ALIGNMENT 57 Y12-14a08.p1k chr09 299 206 439378 439475 C 94 89.36 1194 reject_low 1 ALIGNMENT 61 Y12-14a08.p1k chr13 306 206 923839 923943 C 101 89.11 1194|1,0 reject_low 19 ALIGNMENT 0 Y12-14a08.p1k chr14 160 62 784331 784330 C 99 0.00 1194 reject_low 17 ALIGNMENT 0 Y12-14a08.p1k chr12 210 62 1064683 1064682 C 149 0.00 1194 reject_low 13 ALIGNMENT 256 Y12-14a08.p1k chr02 750 304 812059 812501 C 447 88.37 1194|0,1 reject_low 11 ALIGNMENT 0 Y12-14a08.p1k chr04 870 300 1524922 1524921 C 571 0.00 1194 reject_low 7 ALIGNMENT 21 Y12-14a08.p1k chr02 65 21 813133 813177 C 45 100.00 1194 reject_low 11 ALIGNMENT 26 Y12-14a08.p1k chr08 136 21 556836 556950 C 116 93.97 1194 reject_low 20 ALIGNMENT 0 Y12-14a08.p1k chr11 62 190 390 389 F 129 0.00 1194 reject_low 6 ALIGNMENT 63 Y12-14a08.p1k chr12 299 211 1064592 1064682 C 89 92.13 1194 reject_low 13 ALIGNMENT 0 Y12-14a08.p1k chr05 230 334 6384 6375 F 105 0.00 1194 reject_bad_break 0 ALIGNMENT 70 Y12-14a08.p1k chr03 304 484 970 1149 F 181 82.87 1194|2,0 reject_low 18 ALIGNMENT 91 Y12-14a08.p1k chr12 484 306 1064226 1064404 C 179 86.59 1194 reject_low 13 ALIGNMENT 0 Y12-14a08.p1k chr10 300 870 7455 7454 F 571 0.00 1194 reject_low 15 ALIGNMENT 52 Y12-14a08.p1k chr06 207 306 5125 5229 F 100 86.00 1194 reject_low 2 ALIGNMENT 26 Y12-14a08.p1k chr03 23 208 155 338 F 186 90.32 1194|0,1 reject_low 18 ALIGNMENT 0 Y12-14a08.p1k chr14 870 485 783227 783226 C 386 0.00 1194 reject_low 17 ALIGNMENT 0 Y12-14a08.p1k chr14 206 207 783685 784284 C 0 0.00 1194 reject_low 17 ALIGNMENT 0 Y12-14a08.p1k chr12 485 870 12137 12136 F 386 0.00 1194 reject_low 16 ALIGNMENT 58 Y12-14a08.p1k chr04 299 206 1524921 1525017 C 94 89.36 1194 reject_low 7 ALIGNMENT 52 Y12-14a08.p1k chr14 299 206 783592 783685 C 94 88.30 1194|0,1 reject_low 17 ALIGNMENT 0 Y12-14a08.p1k chr14 300 303 7115 7299 F 4 0.00 1194 reject_low 4 ALIGNMENT 0 Y12-14a08.p1k chr08 870 171 556837 556836 C 700 0.00 1194 reject_low 8 ALIGNMENT 0 Y12-14a08.p1k chr14 62 205 7019 7018 F 144 0.00 1194 reject_low 4 ALIGNMENT 62 Y12-14a08.p1k chr03 206 306 695 798 F 101 89.11 1194|2,1 reject_low 18 ALIGNMENT 0 Y12-14a08.p1k chr09 870 751 438748 438747 C 120 0.00 1194 reject_low 1 ALIGNMENT 47 Y12-14a08.p1k chr14 206 299 7019 7114 F 94 85.11 1194 reject_low 4 ALIGNMENT 0 Y12-14a08.p1k chr14 751 870 7745 7744 F 120 0.00 1194 reject_low 4 ALIGNMENT 0 Y12-14a08.p1k chr12 62 114 11196 11195 F 53 0.00 1194 reject_low 16 ALIGNMENT 268 Y12-14a08.p1k chr08 307 750 5379 5820 F 444 89.19 1194 reject_low 3 ALIGNMENT 0 Y12-14a08.p1k chr08 62 210 5099 5098 F 149 0.00 1194 reject_low 3 ALIGNMENT 652 Y12-14a08.p1k chr05 335 1177 6376 7200 F 843 95.49 1194 reject_bad_break 0 ALIGNMENT 46 Y12-14a08.p1k chr03 306 206 316080 316181 C 101 85.15 1194 reject_low 14 ALIGNMENT 0 Y12-14a08.p1k chr04 205 62 1525018 1525017 C 144 0.00 1194 reject_low 7 ALIGNMENT 0 Y12-14a08.p1k chr12 305 300 1064405 1064591 C 6 0.00 1194 reject_low 13 ALIGNMENT 46 Y12-14a08.p1k chr13 211 305 5946 6041 F 95 86.32 1194|0,1 reject_low 5 ALIGNMENT 0 Y12-14a08.p1k chr02 870 751 812060 812059 C 120 0.00 1194 reject_low 11 ALIGNMENT 23 Y12-14a08.p1k chr08 170 21 556836 556985 C 150 91.33 1194 reject_low 8 ALIGNMENT 0 Y12-14a08.p1k chr08 305 306 556232 556409 C 0 0.00 1194 reject_low 20 ALIGNMENT 63 Y12-14a08.p1k chr10 211 299 7365 7455 F 89 92.13 1194 reject_low 15 ALIGNMENT 0 Y12-14a08.p1k chr14 870 200 784225 784224 C 671 0.00 1194 reject_low 10 ALIGNMENT 22 Y12-14a08.p1k chr14 207 161 784284 784330 C 47 97.87 1194|1,0 reject_low 17 ALIGNMENT 0 Y12-14a08.p1k chr12 207 206 11286 11681 F 0 0.00 1194 reject_low 16 ALIGNMENT 0 Y12-14a08.p1k chr03 205 62 316182 316181 C 144 0.00 1194 reject_low 14 ALIGNMENT 263 Y12-14a08.p1k chr14 304 750 7300 7745 F 447 88.59 1194 reject_low 4 ALIGNMENT 0 Y12-14a08.p1k chr14 92 62 784331 784330 C 31 0.00 1194 reject_low 10 ALIGNMENT 0 Y12-14a08.p1k chr08 870 397 556142 556141 C 474 0.00 1194 reject_low 20 ALIGNMENT 0 Y12-14a08.p1k chr14 870 201 784040 784039 C 670 0.00 1194 reject_low 9 ALIGNMENT 0 Y12-14a08.p1k chr03 208 207 338 696 F 0 0.00 1194 reject_low 18 ALIGNMENT 0 Y12-14a08.p1k chr07 62 217 385 384 F 156 0.00 1194 reject_low 12 ALIGNMENT 0 Y12-14a08.p1k chr06 751 870 5848 5847 F 120 0.00 1194 reject_low 2 ALIGNMENT 256 Y12-14a08.p1k chr13 304 750 6216 6658 F 447 88.37 1194|1,0 reject_low 5 ALIGNMENT 55 Y12-14a08.p1k chr08 396 304 556141 556233 C 93 90.32 1194|0,2 reject_low 20 ALIGNMENT 0 Y12-14a08.p1k chr03 306 305 798 971 F 0 0.00 1194 reject_low 18 ALIGNMENT 96 Y12-14a08.p1k chr14 484 304 783226 783406 C 181 87.85 1194 reject_low 17 ALIGNMENT 0 Y12-14a08.p1k chr13 62 210 5946 5945 F 149 0.00 1194 reject_low 5 ALIGNMENT 0 Y12-14a08.p1k chr03 485 870 1149 1148 F 386 0.00 1194 reject_low 18 ALIGNMENT 0 Y12-14a08.p1k chr02 210 66 812772 813132 C 145 0.00 1194 reject_low 11 ALIGNMENT 274 Y12-14a08.p1k chr06 307 750 5405 5848 F 444 89.41 1194 reject_low 2 ALIGNMENT 0 Y12-14a08.p1k chr03 306 307 315905 316079 C 0 0.00 1194 reject_low 14 ALIGNMENT 0 Y12-14a08.p1k chr11 307 870 509 508 F 564 0.00 1194 reject_low 6 ALIGNMENT 0 Y12-14a08.p1k chr09 205 62 439476 439475 C 144 0.00 1194 reject_low 1 ALIGNMENT 23 Y12-14a08.p1k chr12 115 207 11196 11286 F 93 92.47 1194|0,1 reject_low 16 ALIGNMENT 0 Y12-14a08.p1k chr13 305 306 923664 923839 C 0 0.00 1194 reject_low 19 ALIGNMENT 21 Y12-14a08.p1k chr14 200 20 784039 784223 C 181 90.06 1194 reject_low 9 ALIGNMENT 0 Y12-14a08.p1k chr13 751 870 6658 6657 F 120 0.00 1194 reject_low 5 ALIGNMENT 47 Y12-14a08.p1k chr08 211 299 5099 5190 F 89 86.52 1194 reject_low 3 ALIGNMENT 64 Y12-14a08.p1k chr11 191 306 390 509 F 116 87.93 1194 reject_low 6 ALIGNMENT 295 Y12-14a08.p1k chr09 750 304 438747 439193 C 447 90.83 1194 reject_low 1 ALIGNMENT 850 Y12-14a09.q1k chr04 26 1064 996214 997251 F 1039 95.09 1407 accept_chi 0 ALIGNMENT 700 Y12-14a09.p1k chr16 810 13 273346 274138 C 798 97.74 1236 accept_chi 1 ALIGNMENT 750 Y12-14a10.p1k chr11 4 789 532881 533664 F 786 99.11 1290 accept 0 ALIGNMENT 852 Y12-14a10.q1k chr11 1034 28 537465 538472 C 1007 96.52 1484 accept 0 ALIGNMENT 242 Y12-14a12.q1k chr04 43 371 1376982 1377304 F 329 93.31 1907 accept 0 ALIGNMENT 988 Y12-14a15.q1k chr12 37 1203 466370 467552 F 1167 95.72 1410 reject_low 2 ALIGNMENT 986 Y12-14a15.p1k chr12 1071 22 452633 453679 C 1050 98.38 1071 reject_low 1 ALIGNMENT 1003 Y12-14a15.q1k chr12 37 1235 457233 458448 F 1199 95.41 1410 accept 0 ALIGNMENT 986 Y12-14a15.p1k chr12 1071 22 461770 462816 C 1050 98.38 1071 accept 0 ALIGNMENT 911 Y12-14a16.p1k chr15 18 1089 235795 236862 F 1072 97.01 1151 accept_chi 1 ALIGNMENT 0 Y12-14a16.p1k chr02 819 601 464192 464191 C 219 0.00 1151 reject_low 4 ALIGNMENT 0 Y12-14a16.p1k chr15 62 457 235646 235645 F 396 0.00 1151 reject_low 7 ALIGNMENT 31 Y12-14a16.p1k chr02 600 503 464191 464288 C 98 84.69 1151 reject_low 4 ALIGNMENT 0 Y12-14a16.p1k chr16 819 541 462794 462793 C 279 0.00 1151 reject_low 6 ALIGNMENT 0 Y12-14a16.p1k chr16 503 62 462830 462829 C 442 0.00 1151 reject_low 6 ALIGNMENT 0 Y12-14a16.p1k chr02 423 62 464290 464289 C 362 0.00 1151 reject_low 2 ALIGNMENT 0 Y12-14a16.p1k chr16 463 819 793023 793022 F 357 0.00 1151 reject_low 5 ALIGNMENT 0 Y12-14a16.p1k chr15 558 819 236398 236397 F 262 0.00 1151 reject_low 3 ALIGNMENT 0 Y12-14a16.p1k chr16 62 421 792983 792982 F 360 0.00 1151 reject_low 5 ALIGNMENT 0 Y12-14a16.p1k chr02 502 62 464289 464288 C 441 0.00 1151 reject_low 4 ALIGNMENT 1006 Y12-14a16.q1k chr06 1255 38 81554 82779 C 1218 95.48 1456 accept_chi 0 ALIGNMENT 0 Y12-14a16.p1k chr02 819 648 464067 464066 C 172 0.00 1151 reject_low 2 ALIGNMENT 22 Y12-14a16.p1k chr16 540 504 462793 462829 C 37 94.59 1151 reject_low 6 ALIGNMENT 30 Y12-14a16.p1k chr15 443 557 236279 236398 F 115 80.87 1151 reject_low 3 ALIGNMENT 0 Y12-14a16.p1k chr15 601 819 236304 236303 F 219 0.00 1151 reject_low 7 ALIGNMENT 21 Y12-14a16.p1k chr16 422 462 792983 793023 F 41 85.37 1151 reject_low 5 ALIGNMENT 0 Y12-14a16.p1k chr15 479 502 235667 236200 F 24 0.00 1151 reject_low 7 ALIGNMENT 68 Y12-14a16.p1k chr02 647 424 464066 464289 C 224 81.25 1151 reject_low 2 ALIGNMENT 21 Y12-14a16.p1k chr15 503 600 236201 236304 F 98 82.65 1151 reject_low 7 ALIGNMENT 0 Y12-14a16.p1k chr15 62 442 236279 236278 F 381 0.00 1151 reject_low 3 ALIGNMENT 20 Y12-14a16.p1k chr15 458 478 235646 235666 F 21 100.00 1151 reject_low 7 ALIGNMENT 888 Y12-14a17.p1k chr02 1054 26 284241 285254 C 1029 97.67 1058 accept 0 ALIGNMENT 873 Y12-14a17.q1k chr02 34 998 281441 282404 F 965 97.62 1369 accept 0 ALIGNMENT 889 Y12-14a18.q1k chr04 1047 35 1327704 1328718 C 1013 96.84 1446 accept 0 ALIGNMENT 931 Y12-14a18.p1k chr04 16 1073 1324523 1325571 F 1058 97.64 1080 accept 0 ALIGNMENT 0 Y12-14a19.p1k chr01 779 855 123823 123822 F 77 0.00 1053 reject_low 1 ALIGNMENT 1019 Y12-14a19.q1k chr15 1226 34 249053 250259 C 1193 96.31 1371 accept 0 ALIGNMENT 918 Y12-14a19.p1k chr15 26 1052 245574 246601 F 1027 97.86 1053 accept 0 ALIGNMENT 102 Y12-14a19.p1k chr01 474 778 123519 123823 F 305 79.67 1053 reject_low 1 ALIGNMENT 0 Y12-14a19.p1k chr01 62 473 123519 123518 F 412 0.00 1053 reject_low 1 ALIGNMENT 1008 Y12-14a21.q1k chr05 1231 37 418998 420192 C 1195 95.40 1331 accept 0 ALIGNMENT 921 Y12-14a21.p1k chr05 30 1025 414433 415428 F 996 98.59 1025 accept 0 ALIGNMENT 912 Y12-14a22.q1k chr11 42 1096 581515 582579 F 1055 96.21 1372 accept 0 ALIGNMENT 688 Y12-14a22.p1k chr11 824 11 585078 585886 C 814 96.68 1145 accept 0 ALIGNMENT 1004 Y12-14a24.q1k chr15 1119 37 282425 283513 C 1083 98.43 1288 accept 0 ALIGNMENT 886 Y12-14a24.p1k chr15 23 988 278271 279245 F 966 98.65 992 accept 0 ALIGNMENT 918 Y12-14b01.p1k chr11 1008 21 137831 138815 C 988 98.99 1059 accept 0 ALIGNMENT 877 Y12-14b01.q1k chr11 36 1068 134124 135160 F 1033 96.32 1358 accept 0 ALIGNMENT 484 Y12-14b02.q1k chr07 47 837 710012 710772 F 791 90.39 1587 ambiguous_trans 0 ALIGNMENT 469 Y12-14b02.q1k chr09 47 837 208108 208868 F 791 89.76 1587 ambiguous_trans 1 ALIGNMENT 1027 Y12-14b04.q1k chr07 36 1228 710010 711216 F 1193 96.23 1433 ambiguous_trans 2 ALIGNMENT 965 Y12-14b04.p1k chr11 23 1148 72093 73218 F 1126 96.63 1150 accept 0 ALIGNMENT 1023 Y12-14b04.q1k chr09 36 1244 208106 209330 F 1209 95.78 1433 ambiguous_trans 1 ALIGNMENT 61 Y12-14b05.q1k chr03 223 74 151516 151665 C 150 83.33 1498 reject_low 27 ALIGNMENT 162 Y12-14b05.q1k chr15 34 221 709838 710024 F 188 98.94 1498 reject_low 16 ALIGNMENT 0 Y12-14b05.q1k chr03 222 749 124462 124461 F 528 0.00 1498 reject_low 28 ALIGNMENT 162 Y12-14b05.q1k chr09 221 34 246217 246403 C 188 98.94 1498 reject_low 10 ALIGNMENT 0 Y12-14b05.q1k chr03 222 749 168928 168927 F 528 0.00 1498 reject_low 19 ALIGNMENT 142 Y12-14b05.q1k chr01 48 221 165991 166163 F 174 97.13 1498 reject_low 24 ALIGNMENT 162 Y12-14b05.q1k chr15 34 221 704210 704396 F 188 98.94 1498 reject_low 15 ALIGNMENT 61 Y12-14b05.q1k chr03 74 226 142929 143082 F 153 82.35 1498 reject_low 26 ALIGNMENT 0 Y12-14b05.q1k chr08 222 749 389512 389511 F 528 0.00 1498 reject_low 9 ALIGNMENT 44 Y12-14b05.q1k chr10 167 74 204036 204130 C 94 85.11 1498 reject_low 30 ALIGNMENT 163 Y12-14b05.q1k chr04 222 34 981164 981351 C 189 98.94 1498 reject_low 4 ALIGNMENT 0 Y12-14b05.q1k chr10 224 749 204037 204036 F 526 0.00 1498 reject_low 3 ALIGNMENT 0 Y12-14b05.q1k chr03 227 749 143082 143081 F 523 0.00 1498 reject_low 26 ALIGNMENT 0 Y12-14b05.q1k chr03 749 222 84295 84294 C 528 0.00 1498 reject_low 6 ALIGNMENT 164 Y12-14b05.q1k chr07 224 34 811449 811638 C 191 98.95 1498 reject_low 1 ALIGNMENT 162 Y12-14b05.q1k chr12 34 221 976399 976585 F 188 98.94 1498 reject_low 12 ALIGNMENT 159 Y12-14b05.q1k chr08 34 221 91909 92095 F 188 98.40 1498 reject_low 20 ALIGNMENT 0 Y12-14b05.q1k chr14 222 749 562365 562364 F 528 0.00 1498 reject_low 14 ALIGNMENT 648 Y12-14b05.q1k chr15 1000 222 273821 274585 C 779 95.89 1498 accept 0 ALIGNMENT 0 Y12-14b05.q1k chr13 222 749 168681 168680 F 528 0.00 1498 reject_low 13 ALIGNMENT 0 Y12-14b05.q1k chr01 222 749 160575 160574 F 528 0.00 1498 reject_low 23 ALIGNMENT 0 Y12-14b05.q1k chr14 749 222 524731 524730 C 528 0.00 1498 reject_low 22 ALIGNMENT 162 Y12-14b05.q1k chr14 34 221 562179 562365 F 188 98.94 1498 reject_low 14 ALIGNMENT 0 Y12-14b05.q1k chr06 749 222 143536 143535 C 528 0.00 1498 reject_low 8 ALIGNMENT 44 Y12-14b05.q1k chr03 188 74 149513 149627 C 115 81.74 1498 reject_low 29 ALIGNMENT 59 Y12-14b05.q1k chr03 74 221 124314 124462 F 148 82.43 1498 reject_low 28 ALIGNMENT 159 Y12-14b05.q1k chr10 34 221 354905 355091 F 188 98.40 1498 reject_low 21 ALIGNMENT 0 Y12-14b05.q1k chr08 222 749 92095 92094 F 528 0.00 1498 reject_low 20 ALIGNMENT 0 Y12-14b05.q1k chr03 749 188 84103 84102 C 562 0.00 1498 reject_low 25 ALIGNMENT 0 Y12-14b05.q1k chr10 749 168 204037 204036 C 582 0.00 1498 reject_low 30 ALIGNMENT 0 Y12-14b05.q1k chr15 222 749 704396 704395 F 528 0.00 1498 reject_low 15 ALIGNMENT 162 Y12-14b05.q1k chr10 34 221 541155 541341 F 188 98.94 1498 reject_low 11 ALIGNMENT 0 Y12-14b05.q1k chr12 226 749 732006 732005 F 524 0.00 1498 reject_low 5 ALIGNMENT 162 Y12-14b05.q1k chr03 221 34 84294 84480 C 188 98.94 1498 reject_low 6 ALIGNMENT 162 Y12-14b05.q1k chr06 221 34 143535 143721 C 188 98.94 1498 reject_low 8 ALIGNMENT 747 Y12-14b05.p1k chr15 20 998 268765 269711 F 979 94.28 1205 accept 0 ALIGNMENT 0 Y12-14b05.q1k chr03 749 224 151517 151516 C 526 0.00 1498 reject_low 27 ALIGNMENT 0 Y12-14b05.q1k chr09 749 222 246218 246217 C 528 0.00 1498 reject_low 10 ALIGNMENT 127 Y12-14b05.q1k chr03 187 34 84102 84254 C 154 98.05 1498 reject_low 25 ALIGNMENT 0 Y12-14b05.q1k chr01 222 749 166163 166162 F 528 0.00 1498 reject_low 24 ALIGNMENT 159 Y12-14b05.q1k chr03 34 221 168742 168928 F 188 98.40 1498 reject_low 19 ALIGNMENT 0 Y12-14b05.q1k chr15 749 223 664814 664813 C 527 0.00 1498 reject_low 18 ALIGNMENT 162 Y12-14b05.q1k chr05 225 34 62138 62328 C 192 98.44 1498 reject_low 2 ALIGNMENT 160 Y12-14b05.q1k chr15 222 34 664813 665000 C 189 98.41 1498 reject_low 18 ALIGNMENT 164 Y12-14b05.q1k chr10 34 223 203849 204037 F 190 98.95 1498 reject_low 3 ALIGNMENT 0 Y12-14b05.q1k chr12 222 749 976585 976584 F 528 0.00 1498 reject_low 12 ALIGNMENT 160 Y12-14b05.q1k chr14 222 34 519163 519350 C 189 98.41 1498 reject_low 17 ALIGNMENT 0 Y12-14b05.q1k chr10 222 749 355091 355090 F 528 0.00 1498 reject_low 21 ALIGNMENT 162 Y12-14b05.q1k chr13 34 221 168495 168681 F 188 98.94 1498 reject_low 13 ALIGNMENT 0 Y12-14b05.q1k chr14 749 223 519164 519163 C 527 0.00 1498 reject_low 17 ALIGNMENT 159 Y12-14b05.q1k chr14 221 34 524730 524916 C 188 98.40 1498 reject_low 22 ALIGNMENT 0 Y12-14b05.q1k chr15 222 749 710024 710023 F 528 0.00 1498 reject_low 16 ALIGNMENT 0 Y12-14b05.q1k chr15 221 62 274586 274585 C 160 0.00 1498 accept 0 ALIGNMENT 0 Y12-14b05.q1k chr05 749 226 62139 62138 C 524 0.00 1498 reject_low 2 ALIGNMENT 159 Y12-14b05.q1k chr12 34 225 731816 732006 F 192 97.92 1498 reject_low 5 ALIGNMENT 0 Y12-14b05.q1k chr06 749 155 137719 137718 C 595 0.00 1498 reject_low 31 ALIGNMENT 162 Y12-14b05.q1k chr08 34 221 389326 389512 F 188 98.94 1498 reject_low 9 ALIGNMENT 36 Y12-14b05.q1k chr06 154 74 137718 137798 C 81 83.95 1498 reject_low 31 ALIGNMENT 0 Y12-14b05.q1k chr04 749 223 981165 981164 C 527 0.00 1498 reject_low 4 ALIGNMENT 0 Y12-14b05.q1k chr06 749 222 137909 137908 C 528 0.00 1498 reject_low 7 ALIGNMENT 162 Y12-14b05.q1k chr06 221 34 137908 138094 C 188 98.94 1498 reject_low 7 ALIGNMENT 0 Y12-14b05.q1k chr10 222 749 541341 541340 F 528 0.00 1498 reject_low 11 ALIGNMENT 0 Y12-14b05.q1k chr07 749 225 811450 811449 C 525 0.00 1498 reject_low 1 ALIGNMENT 142 Y12-14b05.q1k chr01 48 221 160403 160575 F 174 97.13 1498 reject_low 23 ALIGNMENT 0 Y12-14b05.q1k chr03 749 189 149514 149513 C 561 0.00 1498 reject_low 29 ALIGNMENT 768 Y12-14b09.q1k chr12 883 31 246977 247824 C 853 98.01 1522 accept 0 ALIGNMENT 895 Y12-14b09.p1k chr12 16 1051 243928 244955 F 1036 97.10 1162 accept 0 ALIGNMENT 784 Y12-14b10.q1k chr07 940 35 576796 577699 C 906 96.91 1427 accept_trans 0 ALIGNMENT 187 Y12-14b10.p1k chr07 22 222 568545 568745 F 201 100.00 1244|0,3 accept_trans 0 ALIGNMENT 749 Y12-14b10.p1k chr07 217 1096 574705 575572 F 880 97.50 1244|3,0 accept_trans 0 ALIGNMENT 0 Y12-14b10.p1k chr07 220 219 568743 574707 F 0 0.00 1244 accept_trans 0 ALIGNMENT 962 Y12-14b12.q1k chr07 1134 39 902717 903831 C 1096 96.81 1435 accept 0 ALIGNMENT 693 Y12-14b12.p1k chr07 44 835 898360 899145 F 792 96.84 1403 accept 0 ALIGNMENT 905 Y12-14b13.q1k chr09 1105 36 250525 251585 C 1070 95.98 1485 accept_chi 1 ALIGNMENT 964 Y12-14b13.p1k chr13 1145 20 297180 298304 C 1126 97.25 1145 accept_chi 0 ALIGNMENT 0 Y12-14b14.p1k chr12 62 527 459308 459307 F 466 0.00 1296 accept 0 ALIGNMENT 881 Y12-14b14.q1k chr12 1043 37 464781 465801 C 1007 96.43 1455 accept 0 ALIGNMENT 713 Y12-14b14.p1k chr06 928 37 31332 32220 C 892 94.73 1296 reject_low 2 ALIGNMENT 881 Y12-14b14.q1k chr12 1043 37 455644 456664 C 1007 96.43 1455 reject_low 1 ALIGNMENT 94 Y12-14b14.p1k chr12 528 635 459308 459415 F 108 98.15 1296 accept 0 ALIGNMENT 94 Y12-14b14.p1k chr12 528 635 468445 468552 F 108 98.15 1296 reject_low 3 ALIGNMENT 0 Y12-14b14.p1k chr12 62 527 468445 468444 F 466 0.00 1296 reject_low 3 ALIGNMENT 916 Y12-14b15.q1k chr07 37 1021 385347 386335 F 985 97.97 1400 accept 0 ALIGNMENT 569 Y12-14b15.q1k chr02 1003 39 661125 662091 C 965 86.42 1400 reject_low 1 ALIGNMENT 790 Y12-14b15.p1k chr07 921 15 390481 391382 C 907 97.24 1178 accept 0 ALIGNMENT 838 Y12-14b16.p1k chr11 18 957 547056 547986 F 940 97.98 1235 accept 0 ALIGNMENT 934 Y12-14b16.q1k chr11 1101 34 549400 550474 C 1068 97.00 1378 accept 0 ALIGNMENT 959 Y12-14b18.q1k chr13 30 1129 823482 824580 F 1100 96.82 1441 accept 0 ALIGNMENT 879 Y12-14b18.p1k chr13 1052 19 828390 829409 C 1034 97.10 1145 accept 0 ALIGNMENT 888 Y12-14b19.p1k chr06 980 20 96058 97008 C 961 98.44 1069 accept_chi 0 ALIGNMENT 0 Y12-14b19.p1k chr15 615 817 428037 428036 F 203 0.00 1069 reject_low 2 ALIGNMENT 367 Y12-14b19.q1k chr07 87 1152 662344 663407 F 1066 79.92 1429 accept_chi 1 ALIGNMENT 22 Y12-14b19.p1k chr15 592 614 428015 428037 F 23 100.00 1069 reject_low 2 ALIGNMENT 0 Y12-14b19.p1k chr15 62 591 428015 428014 F 530 0.00 1069 reject_low 2 ALIGNMENT 931 Y12-14b20.p1k chr04 1088 19 1177970 1179036 C 1070 96.64 1093 accept 0 ALIGNMENT 27 Y12-14b20.q1k chr04 658 608 884119 884169 C 51 88.24 1339 reject_low 1 ALIGNMENT 759 Y12-14b20.q1k chr04 31 894 1174279 1175150 F 864 97.69 1339 accept 0 ALIGNMENT 0 Y12-14b20.q1k chr04 607 62 884170 884169 C 546 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-14b20.q1k chr04 814 659 884120 884119 C 156 0.00 1339 reject_low 1 ALIGNMENT 1064 Y12-14b21.q1k chr02 1229 37 563953 565148 C 1193 96.90 1349 accept 0 ALIGNMENT 871 Y12-14b21.p1k chr02 24 963 559921 560852 F 940 98.83 1031 accept 0 ALIGNMENT 913 Y12-14b22.p1k chr15 1049 26 112080 113103 C 1024 97.66 1067 accept 0 ALIGNMENT 833 Y12-14b22.q1k chr15 34 985 109243 110195 F 952 96.22 1288 accept 0 ALIGNMENT 264 Y12-14b23.q1k chr04 183 883 129077 129767 F 701 81.31 1273 accept 0 ALIGNMENT 237 Y12-14b23.p1k chr04 909 206 132681 133375 C 704 78.98 1026 accept 0 ALIGNMENT 0 Y12-14b23.p1k chr04 205 182 133376 133399 C 24 0.00 1026 accept 0 ALIGNMENT 23 Y12-14b23.p1k chr04 181 94 133400 133487 C 88 76.14 1026 accept 0 ALIGNMENT 951 Y12-14b24.q1k chr16 1184 29 359246 360404 C 1156 95.07 1300 accept 0 ALIGNMENT 809 Y12-14b24.p1k chr16 17 950 356015 356938 F 934 97.32 1107 accept 0 ALIGNMENT 911 Y12-14c01.p1k chr04 9 1070 752097 753145 F 1062 97.65 1100 accept 0 ALIGNMENT 1031 Y12-14c01.q1k chr04 1259 37 755191 756418 C 1223 96.24 1396 accept 0 ALIGNMENT 517 Y12-14c02.p1k chr12 92 740 489897 490543 F 649 93.53 1174 reject_low 2 ALIGNMENT 892 Y12-14c02.q1k chr12 1109 33 464680 465771 C 1077 95.08 1401 accept 1 ALIGNMENT 820 Y12-14c02.p1k chr12 92 1124 461066 462082 F 1033 94.19 1174 accept 1 ALIGNMENT 892 Y12-14c02.q1k chr12 1109 33 455543 456634 C 1077 95.08 1401 accept 0 ALIGNMENT 820 Y12-14c02.p1k chr12 92 1124 451929 452945 F 1033 94.19 1174 accept 0 ALIGNMENT 0 Y12-14c02.p1k chr12 741 856 490543 490542 F 116 0.00 1174 reject_low 2 ALIGNMENT 442 Y12-14c03.p1k chr04 64 688 1047786 1048406 F 625 91.36 1301 accept 0 ALIGNMENT 842 Y12-14c03.q1k chr04 991 31 1049462 1050419 C 961 96.98 1416 accept 0 ALIGNMENT 773 Y12-14c04.p1k chr12 877 2 806162 807030 C 876 96.92 1152 accept 0 ALIGNMENT 754 Y12-14c04.q1k chr12 33 830 802870 803666 F 798 98.75 1377 accept 0 ALIGNMENT 481 Y12-14c05.q1k chr03 551 37 12239 12755 C 515 99.42 1415 reject_low 2 ALIGNMENT 783 Y12-14c05.q1k chr03 932 37 292651 293544 C 896 97.77 1415 accept 0 ALIGNMENT 610 Y12-14c05.p1k chr03 64 836 288808 289573 F 773 95.21 1275 accept 0 ALIGNMENT 0 Y12-14c05.q1k chr03 777 552 199397 199396 C 226 0.00 1415 reject_low 1 ALIGNMENT 488 Y12-14c05.q1k chr03 551 37 199396 199910 C 515 99.81 1415 reject_low 1 ALIGNMENT 0 Y12-14c05.q1k chr03 777 552 12240 12239 C 226 0.00 1415 reject_low 2 ALIGNMENT 673 Y12-14c06.q1k chr04 806 35 307747 308513 C 772 97.15 1501 accept 0 ALIGNMENT 37 Y12-14c07.p1k chrm 64 107 34933 34976 F 44 97.73 1199 reject_low 10 ALIGNMENT 0 Y12-14c07.p1k chrm 62 368 77661 77660 F 307 0.00 1199 reject_low 14 ALIGNMENT 40 Y12-14c07.p1k chrm 109 64 47473 47518 C 46 97.83 1199 reject_low 6 ALIGNMENT 0 Y12-14c07.p1k chrm 363 62 52391 52390 C 302 0.00 1199 reject_low 12 ALIGNMENT 0 Y12-14c07.q1k chrm 660 103 11556 11555 C 558 0.00 1533 reject_low 1 ALIGNMENT 0 Y12-14c07.p1k chrm 127 370 29901 34925 F 244 0.00 1199 reject_low 15 ALIGNMENT 39 Y12-14c07.p1k chrm 354 462 29814 29923 F 109 81.65 1199 reject_low 4 ALIGNMENT 0 Y12-14c07.p1k chrm 109 357 8279 11482 F 249 0.00 1199 reject_low 17 ALIGNMENT 672 Y12-14c07.q1k chr12 98 969 439054 439912 F 872 94.50 1533 accept 0 ALIGNMENT 0 Y12-14c07.p1k chrm 358 62 9554 9553 C 297 0.00 1199 reject_low 5 ALIGNMENT 38 Y12-14c07.p1k chrm 64 108 8234 8278 F 45 97.78 1199 reject_low 17,19 ALIGNMENT 37 Y12-14c07.p1k chrm 64 107 11045 11088 F 44 97.73 1199 reject_low 9 ALIGNMENT 0 Y12-14c07.p1k chrm 109 374 8279 9026 F 266 0.00 1199 reject_low 19 ALIGNMENT 0 Y12-14c07.p1k chrm 491 422 9491 9490 C 70 0.00 1199 reject_low 5 ALIGNMENT 0 Y12-14c07.p1k chrm 463 491 48182 48181 F 29 0.00 1199 reject_low 3 ALIGNMENT 0 Y12-14c07.p1k chrm 463 491 29923 29922 F 29 0.00 1199 reject_low 4 ALIGNMENT 0 Y12-14c07.p1k chrm 62 357 8213 8212 F 296 0.00 1199 reject_low 2 ALIGNMENT 37 Y12-14c07.p1k chrm 65 108 77671 77714 F 44 97.73 1199 reject_low 11 ALIGNMENT 40 Y12-14c07.p1k chrm 108 49 52331 52390 C 60 90.00 1199 reject_low 16 ALIGNMENT 53 Y12-14c07.p1k chrm 421 359 9490 9553 C 63 95.24 1199 reject_low 5 ALIGNMENT 0 Y12-14c07.p1k chrm 422 491 10787 10786 F 70 0.00 1199 reject_low 20 ALIGNMENT 0 Y12-14c07.p1k chrm 109 491 77714 77713 F 383 0.00 1199 reject_low 11 ALIGNMENT 0 Y12-14c07.p1k chrm 491 422 47476 47475 C 70 0.00 1199 reject_low 16 ALIGNMENT 0 Y12-14c07.p1k chrm 430 491 9082 9081 F 62 0.00 1199 reject_low 19 ALIGNMENT 42 Y12-14c07.p1k chrm 421 364 52332 52390 C 58 91.38 1199 reject_low 12 ALIGNMENT 45 Y12-14c07.p1k chrm 358 490 8213 8346 F 133 83.46 1199 reject_low 2 ALIGNMENT 38 Y12-14c07.p1k chrm 108 64 9489 9533 C 45 97.78 1199 reject_low 7 ALIGNMENT 51 Y12-14c07.p1k chrm 62 126 29837 29900 F 65 93.85 1199 reject_low 15 ALIGNMENT 0 Y12-14c07.p1k chrm 109 491 11548 11547 F 383 0.00 1199 reject_low 8 ALIGNMENT 54 Y12-14c07.p1k chrm 358 421 11483 11547 F 64 95.31 1199 reject_low 17 ALIGNMENT 0 Y12-14c07.p1k chrm 438 491 53885 53884 F 54 0.00 1199 reject_low 18 ALIGNMENT 34 Y12-14c07.p1k chrm 378 421 10744 10787 F 44 95.45 1199 reject_low 20 ALIGNMENT 38 Y12-14c07.p1k chrm 64 108 9030 9074 F 45 97.78 1199 reject_low 20 ALIGNMENT 0 Y12-14c07.p1k chrm 491 110 47474 47473 C 382 0.00 1199 reject_low 6 ALIGNMENT 25 Y12-14c07.q1k chrm 102 33 11555 11623 C 70 91.43 1533 reject_low 1 ALIGNMENT 45 Y12-14c07.p1k chrm 375 429 9027 9082 F 55 94.55 1199 reject_low 19 ALIGNMENT 0 Y12-14c07.p1k chrm 62 353 29814 29813 F 292 0.00 1199 reject_low 4 ALIGNMENT 0 Y12-14c07.p1k chrm 109 491 53869 53868 F 383 0.00 1199 reject_low 13 ALIGNMENT 0 Y12-14c07.p1k chrm 422 491 11547 11546 F 70 0.00 1199 reject_low 17 ALIGNMENT 38 Y12-14c07.p1k chrm 64 108 11504 11548 F 45 97.78 1199 reject_low 8 ALIGNMENT 0 Y12-14c07.p1k chrm 454 491 35007 35006 F 38 0.00 1199 reject_low 15 ALIGNMENT 50 Y12-14c07.p1k chrm 371 453 34926 35007 F 83 87.95 1199 reject_low 15 ALIGNMENT 0 Y12-14c07.p1k chrm 108 491 11088 11087 F 384 0.00 1199 reject_low 9 ALIGNMENT 0 Y12-14c07.p1k chrm 62 370 48093 48092 F 309 0.00 1199 reject_low 3 ALIGNMENT 0 Y12-14c07.p1k chrm 491 109 9490 9489 C 383 0.00 1199 reject_low 7 ALIGNMENT 33 Y12-14c07.p1k chrm 67 108 53828 53869 F 42 97.62 1199 reject_low 13 ALIGNMENT 37 Y12-14c07.p1k chrm 369 421 77661 77713 F 53 90.57 1199 reject_low 14 ALIGNMENT 38 Y12-14c07.p1k chrm 63 107 48099 48143 F 45 97.78 1199 reject_low 18 ALIGNMENT 45 Y12-14c07.p1k chrm 421 372 47475 47524 C 50 98.00 1199 reject_low 16 ALIGNMENT 409 Y12-14c07.p1k chrm 3 747 10682 11413 F 745 89.66 1199 reject_low 1 ALIGNMENT 0 Y12-14c07.p1k chrm 108 491 34976 34975 F 384 0.00 1199 reject_low 10 ALIGNMENT 0 Y12-14c07.p1k chrm 491 422 52333 52332 C 70 0.00 1199 reject_low 12 ALIGNMENT 42 Y12-14c07.p1k chrm 375 437 53823 53885 F 63 90.48 1199 reject_low 18 ALIGNMENT 0 Y12-14c07.p1k chrm 422 491 77713 77712 F 70 0.00 1199 reject_low 14 ALIGNMENT 0 Y12-14c07.p1k chrm 108 374 48144 53822 F 267 0.00 1199 reject_low 18 ALIGNMENT 0 Y12-14c07.p1k chrm 109 377 9075 10743 F 269 0.00 1199 reject_low 20 ALIGNMENT 0 Y12-14c07.p1k chrm 371 109 47525 52330 C 263 0.00 1199 reject_low 16 ALIGNMENT 59 Y12-14c07.p1k chrm 371 462 48093 48182 F 92 91.30 1199 reject_low 3 ALIGNMENT 128 Y12-14c08.p1k chr03 95 530 208091 208522 F 436 77.29 1209 accept 0 ALIGNMENT 0 Y12-14c09.p1k chr11 525 62 313469 313468 C 464 0.00 1069 reject_low 1 ALIGNMENT 813 Y12-14c09.p1k chr05 1066 2 287419 288461 C 1065 94.84 1069 accept 0 ALIGNMENT 587 Y12-14c09.q1k chr05 30 714 283151 283834 F 685 96.20 1461 accept 0 ALIGNMENT 0 Y12-14c09.p1k chr11 740 669 313327 313326 C 72 0.00 1069 reject_low 1 ALIGNMENT 39 Y12-14c09.p1k chr11 668 526 313326 313468 C 143 80.42 1069 reject_low 1 ALIGNMENT 36 Y12-14c09.p1k chr04 668 526 434499 434641 C 143 79.72 1069 reject_low 2 ALIGNMENT 0 Y12-14c09.p1k chr04 525 62 434642 434641 C 464 0.00 1069 reject_low 2 ALIGNMENT 0 Y12-14c09.p1k chr04 740 669 434500 434499 C 72 0.00 1069 reject_low 2 ALIGNMENT 919 Y12-14c10.q1k chr14 34 1053 411232 412254 F 1020 97.75 1428 accept 0 ALIGNMENT 816 Y12-14c10.p1k chr14 965 13 414442 415391 C 953 96.96 1234 accept 0 ALIGNMENT 474 Y12-14c11.p1k chr04 117 764 1046007 1046647 F 648 93.06 1329 accept 0 ALIGNMENT 844 Y12-14c11.q1k chr04 945 32 1051376 1052285 C 914 98.25 1438 accept 0 ALIGNMENT 511 Y12-14c12.p1k chr04 853 119 1380546 1381287 C 735 91.43 1239 accept 0 ALIGNMENT 1006 Y12-14c12.q1k chr04 38 1186 1376971 1378126 F 1149 96.61 1434 accept 0 ALIGNMENT 825 Y12-14c13.p1k chr13 1 1000 354719 355707 F 1000 96.40 1118 accept_trans 0 ALIGNMENT 887 Y12-14c13.q1k chr13 1053 35 364157 365190 C 1019 96.76 1416 accept_trans 0 ALIGNMENT 857 Y12-14c14.p1k chr08 1037 5 13651 14673 C 1033 96.13 1145 accept 0 ALIGNMENT 916 Y12-14c14.q1k chr08 37 1056 10637 11660 F 1020 97.75 1426 accept 0 ALIGNMENT 773 Y12-14c15.p1k chr04 897 1 270346 271234 C 897 96.99 1104 accept 0 ALIGNMENT 978 Y12-14c15.q1k chr04 37 1146 265392 266512 F 1110 96.76 1380 accept 0 ALIGNMENT 1006 Y12-14c16.q1k chr16 36 1214 114366 115550 F 1179 95.93 1434 accept 0 ALIGNMENT 729 Y12-14c16.p1k chr16 846 8 118262 119089 C 839 97.62 1173 accept 0 ALIGNMENT 799 Y12-14c18.q1k chr12 28 957 18004 18921 F 930 96.45 1538 accept 0 ALIGNMENT 611 Y12-14c18.p1k chr12 750 3 20739 21475 C 748 95.19 1130 accept 0 ALIGNMENT 923 Y12-14c19.p1k chr11 1037 15 459975 460995 C 1023 97.95 1056 accept 0 ALIGNMENT 989 Y12-14c19.q1k chr11 30 1192 455092 456245 F 1163 96.47 1407 accept 0 ALIGNMENT 916 Y12-14c21.p1k chr06 1031 14 24927 25942 C 1018 98.04 1032 accept 0 ALIGNMENT 983 Y12-14c21.q1k chr06 38 1146 21984 23105 F 1109 97.20 1295 accept 0 ALIGNMENT 48 Y12-14c22.p1k chr16 28 148 7154 7275 F 121 85.12 1061 reject_low 19 ALIGNMENT 41 Y12-14c22.p1k chr01 20 148 722 853 F 129 82.95 1061 reject_low 14 ALIGNMENT 661 Y12-14c22.p1k chr14 28 1023 7359 8354 F 996 90.36 1061 ambiguous_tel 0 ALIGNMENT 0 Y12-14c22.p1k chr07 149 802 833 832 F 654 0.00 1061 reject_low 15 ALIGNMENT 57 Y12-14c22.p1k chr03 148 28 315727 315848 C 121 87.60 1061 reject_low 17 ALIGNMENT 943 Y12-14c22.q1k chr14 1217 40 10736 11935 C 1178 94.65 1344 ambiguous_tel 0 ALIGNMENT 0 Y12-14c22.p1k chr01 149 802 853 852 F 654 0.00 1061 reject_low 14 ALIGNMENT 640 Y12-14c22.p1k chr13 28 1023 6275 7268 F 996 89.76 1061 reject_low 5 ALIGNMENT 653 Y12-14c22.p1k chr06 28 1028 5461 6456 F 1001 90.11 1061 ambiguous_tel 1 ALIGNMENT 649 Y12-14c22.p1k chr04 28 1005 835 1809 F 978 90.18 1061 reject_low 3 ALIGNMENT 41 Y12-14c22.p1k chr07 20 148 702 833 F 129 82.95 1061 reject_low 15 ALIGNMENT 0 Y12-14c22.p1k chr09 149 802 7836 7835 F 654 0.00 1061 reject_low 18 ALIGNMENT 60 Y12-14c22.p1k chr12 148 28 1064226 1064347 C 121 88.43 1061 reject_low 16 ALIGNMENT 85 Y12-14c22.p1k chr03 28 148 1029 1149 F 121 95.04 1061 reject_low 10 ALIGNMENT 0 Y12-14c22.p1k chr05 419 802 6793 6792 F 384 0.00 1061 reject_low 9 ALIGNMENT 618 Y12-14c22.p1k chr08 28 1005 5435 6407 F 978 89.47 1061 reject_low 6 ALIGNMENT 0 Y12-14c22.p1k chr03 149 802 1149 1148 F 654 0.00 1061 reject_low 10 ALIGNMENT 0 Y12-14c22.p1k chr05 802 149 569544 569543 C 654 0.00 1061 reject_low 11 ALIGNMENT 82 Y12-14c22.p1k chr11 28 148 739 859 F 121 94.21 1061 reject_low 13 ALIGNMENT 0 Y12-14c22.p1k chr16 149 802 7275 7274 F 654 0.00 1061 reject_low 19 ALIGNMENT 45 Y12-14c22.p1k chr11 96 28 665543 665611 C 69 97.10 1061 reject_low 20 ALIGNMENT 937 Y12-14c22.q1k chr06 1217 40 8829 10028 C 1178 94.48 1344 ambiguous_tel 1 ALIGNMENT 221 Y12-14c22.p1k chr05 28 418 6404 6793 F 391 87.98 1061 reject_low 9 ALIGNMENT 640 Y12-14c22.p1k chr02 1023 28 811449 812442 C 996 89.76 1061 reject_low 4 ALIGNMENT 527 Y12-14c22.p1k chr09 992 28 438179 439134 C 965 86.84 1061 reject_low 8 ALIGNMENT 85 Y12-14c22.p1k chr05 148 28 569543 569663 C 121 95.04 1061 reject_low 11 ALIGNMENT 641 Y12-14c22.p1k chr10 1023 28 743890 744886 C 996 89.66 1061 reject_low 2 ALIGNMENT 600 Y12-14c22.p1k chr07 1023 40 1082711 1083698 C 984 88.62 1061 reject_low 7 ALIGNMENT 0 Y12-14c22.p1k chr11 802 97 665544 665543 C 706 0.00 1061 reject_low 20 ALIGNMENT 0 Y12-14c22.p1k chr11 149 802 859 858 F 654 0.00 1061 reject_low 13 ALIGNMENT 0 Y12-14c22.p1k chr12 802 149 1064227 1064226 C 654 0.00 1061 reject_low 16 ALIGNMENT 0 Y12-14c22.p1k chr15 149 802 898 897 F 654 0.00 1061 reject_low 12 ALIGNMENT 85 Y12-14c22.p1k chr15 28 148 778 898 F 121 95.04 1061 reject_low 12 ALIGNMENT 48 Y12-14c22.p1k chr09 28 148 7715 7836 F 121 85.12 1061 reject_low 18 ALIGNMENT 0 Y12-14c22.p1k chr03 802 149 315728 315727 C 654 0.00 1061 reject_low 17 ALIGNMENT 851 Y12-14c23.p1k chr11 994 18 72049 73024 C 977 97.13 999 accept 0 ALIGNMENT 1006 Y12-14c23.q1k chr11 39 1217 68563 69746 F 1179 95.34 1307 accept 0 ALIGNMENT 465 Y12-14d01.q1k chr09 1001 37 437841 438793 C 965 84.87 1399 reject_low 8 ALIGNMENT 959 Y12-14d01.p1k chr04 1104 23 4893 5975 C 1082 97.32 1104 ambiguous_tel 0 ALIGNMENT 579 Y12-14d01.q1k chr04 38 991 1176 2127 F 954 88.57 1399 ambiguous_tel 0 ALIGNMENT 574 Y12-14d01.q1k chr10 991 38 743589 744545 C 954 88.47 1399 ambiguous_tel 1 ALIGNMENT 524 Y12-14d01.q1k chr08 40 991 5777 6725 F 952 86.97 1399 reject_low 7 ALIGNMENT 574 Y12-14d01.q1k chr02 991 38 811148 812104 C 954 88.47 1399 reject_low 4 ALIGNMENT 572 Y12-14d01.q1k chr14 38 991 7700 8655 F 954 88.47 1399 reject_low 6 ALIGNMENT 792 Y12-14d01.q1k chr06 36 1001 5801 6761 F 966 95.34 1399 reject_low 2 ALIGNMENT 574 Y12-14d01.q1k chr13 38 991 6613 7569 F 954 88.47 1399 reject_low 5 ALIGNMENT 956 Y12-14d01.p1k chr10 23 1104 739741 740823 F 1082 97.23 1104 ambiguous_tel 1 ALIGNMENT 597 Y12-14d01.q1k chr07 1001 36 1082400 1083370 C 966 88.51 1399 reject_low 3 ALIGNMENT 1024 Y12-14d02.p1k chr10 1136 21 105481 106593 C 1116 98.30 1153 accept 0 ALIGNMENT 796 Y12-14d02.q1k chr10 35 973 102464 103395 F 939 96.91 1492 accept 0 ALIGNMENT 658 Y12-14d04.q1k chr12 31 872 467757 468592 F 842 94.77 1451 reject_low 2 ALIGNMENT 967 Y12-14d04.p1k chr12 1013 12 462252 463254 C 1002 99.10 1197 accept 0 ALIGNMENT 658 Y12-14d04.q1k chr12 31 872 458620 459455 F 842 94.77 1451 accept 0 ALIGNMENT 967 Y12-14d04.p1k chr12 1013 12 453115 454117 C 1002 99.10 1197 reject_low 1 ALIGNMENT 958 Y12-14d05.q1k chr02 35 1163 321291 322420 F 1129 96.19 1456 accept 0 ALIGNMENT 899 Y12-14d05.p1k chr02 1144 23 325397 326495 C 1122 95.45 1170 accept 0 ALIGNMENT 0 Y12-14d06.p1k chr16 235 122 922362 922361 C 114 0.00 1438 reject_low 1 ALIGNMENT 148 Y12-14d06.p1k chr16 690 236 921910 922361 C 455 78.68 1438 reject_low 1 ALIGNMENT 732 Y12-14d06.q1k chr12 848 32 39377 40196 C 817 97.67 1446 accept 0 ALIGNMENT 579 Y12-14d06.p1k chr12 62 830 35698 36439 F 769 94.28 1438 accept 0 ALIGNMENT 585 Y12-14d07.p1k chr04 913 1 1506905 1507811 C 913 88.61 1075 ambiguous_tel 0 ALIGNMENT 567 Y12-14d07.q1k chr12 853 34 527393 528208 C 820 90.49 1386 accept 1 ALIGNMENT 436 Y12-14d08.p1k chr08 661 47 344040 344645 C 615 92.03 1392 accept 0 ALIGNMENT 688 Y12-14d09.q1k chr11 34 834 320003 320805 F 801 97.25 1407 accept 0 ALIGNMENT 361 Y12-14d11.q1k chr12 1000 66 437839 438768 C 935 80.96 1424 accept 0 ALIGNMENT 1024 Y12-14d12.q1k chr05 34 1264 518455 519695 F 1231 95.53 1515 accept 0 ALIGNMENT 847 Y12-14d14.p1k chr12 14 1032 271912 272921 F 1019 95.39 1139 accept 0 ALIGNMENT 862 Y12-14d14.q1k chr12 1040 38 276014 277029 C 1003 97.01 1347 accept 0 ALIGNMENT 931 Y12-14d15.p1k chr04 16 1088 551250 552314 F 1073 96.74 1124 accept 0 ALIGNMENT 916 Y12-14d15.q1k chr04 1157 39 554053 555160 C 1119 96.07 1512 accept 0 ALIGNMENT 862 Y12-14d16.q1k chr16 31 980 50288 51241 F 950 98.32 1408 accept 0 ALIGNMENT 268 Y12-14d16.p1k chr16 5 846 778919 779756 F 842 77.91 1177 reject_low 2 ALIGNMENT 828 Y12-14d16.p1k chr16 987 5 53911 54879 C 983 95.93 1177 accept 0 ALIGNMENT 386 Y12-14d16.p1k chr15 806 5 225000 225799 C 802 83.17 1177 reject_low 1 ALIGNMENT 707 Y12-14d17.p1k chr15 60 1041 1006107 1007075 F 982 91.55 1284 accept 0 ALIGNMENT 897 Y12-14d17.q1k chr15 1061 34 1009191 1010224 C 1028 96.69 1440 accept 0 ALIGNMENT 639 Y12-14d18.p1k chr15 3 792 555071 555855 F 790 95.95 1153 accept 0 ALIGNMENT 970 Y12-14d18.q1k chr15 1132 37 559076 560185 C 1096 97.08 1424 accept 0 ALIGNMENT 909 Y12-14d19.q1k chr16 1051 34 422466 423480 C 1018 97.54 1403 accept 0 ALIGNMENT 877 Y12-14d19.p1k chr16 16 1046 418824 419844 F 1031 97.09 1087 accept 0 ALIGNMENT 1021 Y12-14d20.q1k chr13 36 1180 399053 400204 F 1145 97.99 1401 accept 0 ALIGNMENT 801 Y12-14d20.p1k chr13 982 17 403012 403960 C 966 96.79 1191 accept 0 ALIGNMENT 774 Y12-14d21.p1k chr08 1 914 445568 446474 F 914 96.72 1019 accept 0 ALIGNMENT 848 Y12-14d21.q1k chr08 976 38 449467 450405 C 939 97.87 1380 accept 0 ALIGNMENT 669 Y12-14d22.p1k chr15 781 15 53577 54340 C 767 97.78 1157 accept 0 ALIGNMENT 937 Y12-14d22.q1k chr15 30 1158 50142 51284 F 1129 96.10 1358 accept 0 ALIGNMENT 1027 Y12-14d23.q1k chr12 39 1220 463770 464955 F 1182 96.53 1349 reject_low 1 ALIGNMENT 808 Y12-14d23.p1k chr12 913 10 457786 458684 C 904 97.90 1078 accept 0 ALIGNMENT 1038 Y12-14d23.q1k chr12 39 1318 454633 455929 F 1280 95.00 1349 accept 0 ALIGNMENT 808 Y12-14d23.p1k chr12 913 10 466923 467821 C 904 97.90 1078 reject_low 1 ALIGNMENT 975 Y12-14d24.q1k chr15 1176 36 797216 798357 C 1141 96.58 1376 accept 0 ALIGNMENT 863 Y12-14d24.p1k chr15 19 1019 793963 794943 F 1001 97.60 1084 accept 0 ALIGNMENT 803 Y12-14e01.q1k chr03 31 936 218642 219546 F 906 97.35 1388 accept 0 ALIGNMENT 297 Y12-14e01.p1k chr03 554 59 221444 221937 C 496 87.10 1276 accept 0 ALIGNMENT 131 Y12-14e02.p1k chr07 854 430 722468 722885 C 425 78.35 1342 accept 0 ALIGNMENT 838 Y12-14e02.q1k chr07 35 1021 718755 719741 F 987 95.85 1467 accept 0 ALIGNMENT 0 Y12-14e03.q1k chr05 62 254 446279 446278 F 193 0.00 1363 ambiguous_trans 21 ALIGNMENT 281 Y12-14e03.q1k chr15 1091 255 597015 597853 C 837 78.26 1363 ambiguous_trans 20 ALIGNMENT 284 Y12-14e03.q1k chr10 1091 161 474577 475509 C 931 77.44 1363 ambiguous_trans 16 ALIGNMENT 281 Y12-14e03.q1k chr10 1091 255 480161 480999 C 837 78.26 1363 ambiguous_trans 18 ALIGNMENT 272 Y12-14e03.q1k chr16 161 1091 853418 854350 F 931 77.23 1363 ambiguous_trans 24 ALIGNMENT 0 Y12-14e03.q1k chr02 160 62 224169 224168 C 99 0.00 1363 ambiguous_trans 15 ALIGNMENT 0 Y12-14e03.p1k chr11 62 217 169918 169917 F 156 0.00 1097 reject_low 1 ALIGNMENT 998 Y12-14e03.q1k chr15 1146 40 972405 973517 C 1107 97.47 1363 ambiguous_trans 10 ALIGNMENT 0 Y12-14e03.q1k chr05 62 160 495284 495283 F 99 0.00 1363 ambiguous_trans 27 ALIGNMENT 1004 Y12-14e03.q1k chr07 1146 40 813575 814687 C 1107 97.65 1363 ambiguous_trans 6 ALIGNMENT 1004 Y12-14e03.q1k chr06 1146 40 140031 141143 C 1107 97.65 1363 ambiguous_trans 5 ALIGNMENT 0 Y12-14e03.q1k chr10 254 62 481000 480999 C 193 0.00 1363 ambiguous_trans 18 ALIGNMENT 992 Y12-14e03.p1k chr10 1095 21 356257 357335 C 1075 97.58 1097 accept 0 ALIGNMENT 977 Y12-14e03.q1k chr04 1146 40 983288 984400 C 1107 96.84 1363 ambiguous_trans 13 ALIGNMENT 0 Y12-14e03.q1k chr16 62 160 853418 853417 F 99 0.00 1363 ambiguous_trans 24 ALIGNMENT 0 Y12-14e03.q1k chr13 254 62 199370 199369 C 193 0.00 1363 ambiguous_trans 19 ALIGNMENT 1022 Y12-14e03.q1k chr14 40 1146 564757 565869 F 1107 98.19 1363 ambiguous_trans 2 ALIGNMENT 284 Y12-14e03.q1k chr02 1091 161 223236 224168 C 931 77.44 1363 ambiguous_trans 15 ALIGNMENT 281 Y12-14e03.q1k chr13 1091 255 198531 199369 C 837 78.26 1363 ambiguous_trans 19 ALIGNMENT 281 Y12-14e03.q1k chr13 1091 161 186364 187296 C 931 77.34 1363 ambiguous_trans 17 ALIGNMENT 1021 Y12-14e03.q1k chr07 40 1146 571468 572581 F 1107 98.19 1363 ambiguous_trans 3 ALIGNMENT 280 Y12-14e03.q1k chr05 255 1091 446279 447117 F 837 78.38 1363 ambiguous_trans 21 ALIGNMENT 282 Y12-14e03.p1k chr11 218 981 169918 170683 F 764 79.19 1097 reject_low 1 ALIGNMENT 1004 Y12-14e03.q1k chr15 40 1146 706788 707900 F 1107 97.65 1363 ambiguous_trans 7 ALIGNMENT 187 Y12-14e03.q1k chr05 161 793 495284 495916 F 633 77.57 1363 ambiguous_trans 27 ALIGNMENT 995 Y12-14e03.q1k chr04 40 1146 516408 517520 F 1107 97.38 1363 ambiguous_trans 11 ALIGNMENT 272 Y12-14e03.q1k chr16 1091 161 846608 847543 C 931 77.34 1363 ambiguous_trans 23 ALIGNMENT 0 Y12-14e03.q1k chr15 254 62 597854 597853 C 193 0.00 1363 ambiguous_trans 20 ALIGNMENT 0 Y12-14e03.q1k chr12 62 254 217968 217967 F 193 0.00 1363 ambiguous_trans_ua 25 ALIGNMENT 974 Y12-14e03.q1k chr02 1146 40 31764 32876 C 1107 96.75 1363 ambiguous_trans 14 ALIGNMENT 277 Y12-14e03.q1k chr12 255 1091 478861 479699 F 837 78.26 1363 ambiguous_trans 26 ALIGNMENT 998 Y12-14e03.q1k chr03 1146 40 86933 88045 C 1107 97.47 1363 ambiguous_trans 9 ALIGNMENT 277 Y12-14e03.q1k chr12 255 1091 217968 218806 F 837 78.26 1363 ambiguous_trans_ua 25 ALIGNMENT 280 Y12-14e03.q1k chr16 255 1091 807524 808362 F 837 78.38 1363 ambiguous_trans 22 ALIGNMENT 983 Y12-14e03.q1k chr12 1146 40 943312 944424 C 1107 97.02 1363 ambiguous_trans 12 ALIGNMENT 1001 Y12-14e03.q1k chr04 1146 40 873939 875051 C 1107 97.56 1363 ambiguous_trans 8 ALIGNMENT 0 Y12-14e03.q1k chr10 160 62 475510 475509 C 99 0.00 1363 ambiguous_trans 16 ALIGNMENT 0 Y12-14e03.q1k chr12 62 254 478861 478860 F 193 0.00 1363 ambiguous_trans 26 ALIGNMENT 1010 Y12-14e03.q1k chr12 40 1146 978461 979573 F 1107 97.83 1363 ambiguous_trans 4 ALIGNMENT 0 Y12-14e03.q1k chr05 794 885 495916 495915 F 92 0.00 1363 ambiguous_trans 27 ALIGNMENT 0 Y12-14e03.q1k chr16 160 62 847544 847543 C 99 0.00 1363 ambiguous_trans 23 ALIGNMENT 0 Y12-14e03.q1k chr16 62 254 807524 807523 F 193 0.00 1363 ambiguous_trans 22 ALIGNMENT 0 Y12-14e03.q1k chr13 160 62 187297 187296 C 99 0.00 1363 ambiguous_trans 17 ALIGNMENT 0 Y12-14e04.q1k chr04 879 512 987167 987166 C 368 0.00 1371 reject_low 4 ALIGNMENT 0 Y12-14e04.q1k chr07 690 879 328658 328657 F 190 0.00 1371 reject_low 17 ALIGNMENT 0 Y12-14e04.q1k chr09 691 879 370487 370486 F 189 0.00 1371 reject_low 8 ALIGNMENT 0 Y12-14e04.q1k chr03 62 247 84339 84338 F 186 0.00 1371 reject_low 21 ALIGNMENT 0 Y12-14e04.q1k chr11 879 512 517118 517117 C 368 0.00 1371 reject_low 15 ALIGNMENT 75 Y12-14e04.q1k chr13 614 700 290797 290883 F 87 95.40 1371 reject_low 9 ALIGNMENT 79 Y12-14e04.q1k chr11 689 611 141022 141100 C 79 100.00 1371 reject_low 11 ALIGNMENT 76 Y12-14e04.q1k chr02 616 697 645161 645242 F 82 97.56 1371 reject_low 14 ALIGNMENT 0 Y12-14e04.q1k chr09 62 609 370407 370406 F 548 0.00 1371 reject_low 8 ALIGNMENT 43 Y12-14e04.q1k chr11 511 400 517117 517231 C 112 83.04 1371 reject_low 15 ALIGNMENT 94 Y12-14e04.q1k chr07 700 534 401519 401686 C 167 86.83 1371 reject_low 1 ALIGNMENT 0 Y12-14e04.q1k chr03 511 879 90745 90744 F 369 0.00 1371 reject_low 20 ALIGNMENT 986 Y12-14e04.p1k chr05 1160 22 359294 360428 C 1139 96.93 1160 accept 0 ALIGNMENT 24 Y12-14e04.q1k chr03 248 510 84855 85118 F 263 73.38 1371 reject_low 19 ALIGNMENT 0 Y12-14e04.q1k chr03 511 879 85118 85117 F 369 0.00 1371 reject_low 19 ALIGNMENT 0 Y12-14e04.q1k chr09 196 62 197484 197483 C 135 0.00 1371 reject_low 3 ALIGNMENT 0 Y12-14e04.q1k chr04 525 879 803221 803220 F 355 0.00 1371 reject_low 7 ALIGNMENT 0 Y12-14e04.q1k chr07 690 879 541926 541925 F 190 0.00 1371 reject_low 23 ALIGNMENT 0 Y12-14e04.q1k chr12 512 616 797067 797177 F 105 0.00 1371 reject_low 24 ALIGNMENT 62 Y12-14e04.q1k chr09 615 697 197587 197669 F 83 91.57 1371 reject_low 18 ALIGNMENT 80 Y12-14e04.q1k chr10 696 614 115926 116008 C 83 98.80 1371 reject_low 12 ALIGNMENT 0 Y12-14e04.q1k chr05 613 62 487401 487400 C 552 0.00 1371 reject_low 16 ALIGNMENT 0 Y12-14e04.q1k chr12 689 879 797249 797248 F 191 0.00 1371 reject_low 24 ALIGNMENT 79 Y12-14e04.q1k chr03 698 611 82451 82538 C 88 96.59 1371 reject_low 5 ALIGNMENT 348 Y12-14e04.q1k chr05 37 419 353974 354356 F 383 98.69 1371|0,3 accept 0 ALIGNMENT 0 Y12-14e04.q1k chr13 701 879 290883 290882 F 179 0.00 1371 reject_low 9 ALIGNMENT 47 Y12-14e04.q1k chr03 215 534 82712 83036 F 320 74.69 1371 reject_low 2 ALIGNMENT 0 Y12-14e04.q1k chr12 62 438 796992 796991 F 377 0.00 1371 reject_low 24 ALIGNMENT 43 Y12-14e04.q1k chr07 400 511 535410 535524 F 112 83.04 1371 reject_low 23 ALIGNMENT 0 Y12-14e04.q1k chr07 533 62 401687 401686 C 472 0.00 1371 reject_low 1 ALIGNMENT 73 Y12-14e04.q1k chr07 617 689 328586 328658 F 73 100.00 1371 reject_low 17 ALIGNMENT 0 Y12-14e04.q1k chr09 698 879 197669 197668 F 182 0.00 1371 reject_low 18 ALIGNMENT 0 Y12-14e04.q1k chr03 535 879 83036 83035 F 345 0.00 1371 reject_low 2 ALIGNMENT 0 Y12-14e04.q1k chr03 511 879 84602 84601 F 369 0.00 1371 reject_low 21 ALIGNMENT 23 Y12-14e04.q1k chr09 231 197 197449 197483 C 35 88.57 1371 reject_low 3 ALIGNMENT 0 Y12-14e04.q1k chr03 879 525 124141 124140 C 355 0.00 1371 reject_low 6 ALIGNMENT 74 Y12-14e04.q1k chr16 699 617 210180 210262 C 83 96.39 1371 reject_low 13 ALIGNMENT 0 Y12-14e04.q1k chr11 610 62 141101 141100 C 549 0.00 1371 reject_low 11 ALIGNMENT 0 Y12-14e04.q1k chr13 62 613 290797 290796 F 552 0.00 1371 reject_low 9 ALIGNMENT 0 Y12-14e04.q1k chr07 62 616 328586 328585 F 555 0.00 1371 reject_low 17 ALIGNMENT 0 Y12-14e04.q1k chr05 879 691 487325 487324 C 189 0.00 1371 reject_low 16 ALIGNMENT 0 Y12-14e04.q1k chr07 879 701 401520 401519 C 179 0.00 1371 reject_low 1 ALIGNMENT 0 Y12-14e04.q1k chr05 417 416 354354 354729 F 0 0.00 1371 accept 0 ALIGNMENT 567 Y12-14e04.q1k chr05 414 1127 354727 355451 F 714 94.40 1371|3,0 accept 0 ALIGNMENT 0 Y12-14e04.q1k chr02 698 879 645242 645241 F 182 0.00 1371 reject_low 14 ALIGNMENT 0 Y12-14e04.q1k chr04 62 413 987003 987002 F 352 0.00 1371 reject_low 22 ALIGNMENT 82 Y12-14e04.q1k chr05 616 697 177097 177178 F 82 100.00 1371 reject_low 10 ALIGNMENT 0 Y12-14e04.q1k chr04 511 879 987100 987099 F 369 0.00 1371 reject_low 22 ALIGNMENT 0 Y12-14e04.q1k chr16 879 700 210181 210180 C 180 0.00 1371 reject_low 13 ALIGNMENT 0 Y12-14e04.q1k chr11 879 690 141023 141022 C 190 0.00 1371 reject_low 11 ALIGNMENT 72 Y12-14e04.q1k chr12 617 688 797178 797249 F 72 100.00 1371 reject_low 24 ALIGNMENT 42 Y12-14e04.q1k chr04 439 524 803134 803221 F 86 86.05 1371 reject_low 7 ALIGNMENT 21 Y12-14e04.q1k chr03 248 510 84339 84602 F 263 73.00 1371 reject_low 21 ALIGNMENT 77 Y12-14e04.q1k chr05 690 614 487324 487400 C 77 100.00 1371 reject_low 16 ALIGNMENT 0 Y12-14e04.q1k chr03 62 214 82712 82711 F 153 0.00 1371 reject_low 2 ALIGNMENT 0 Y12-14e04.q1k chr16 616 62 210263 210262 C 555 0.00 1371 reject_low 13 ALIGNMENT 29 Y12-14e04.q1k chr04 414 510 987003 987100 F 97 81.44 1371 reject_low 22 ALIGNMENT 42 Y12-14e04.q1k chr03 524 439 124140 124227 C 86 86.05 1371 reject_low 6 ALIGNMENT 0 Y12-14e04.q1k chr09 879 232 197450 197449 C 648 0.00 1371 reject_low 3 ALIGNMENT 0 Y12-14e04.q1k chr10 879 697 115927 115926 C 183 0.00 1371 reject_low 12 ALIGNMENT 0 Y12-14e04.q1k chr05 698 879 177178 177177 F 182 0.00 1371 reject_low 10 ALIGNMENT 24 Y12-14e04.q1k chr03 248 510 90482 90745 F 263 73.38 1371 reject_low 20 ALIGNMENT 0 Y12-14e04.q1k chr03 62 247 84855 84854 F 186 0.00 1371 reject_low 19 ALIGNMENT 0 Y12-14e04.q1k chr07 62 399 535410 535409 F 338 0.00 1371 reject_low 23 ALIGNMENT 0 Y12-14e04.q1k chr03 879 699 82452 82451 C 181 0.00 1371 reject_low 5 ALIGNMENT 0 Y12-14e04.q1k chr03 438 62 124228 124227 C 377 0.00 1371 reject_low 6 ALIGNMENT 0 Y12-14e04.q1k chr11 399 62 517232 517231 C 338 0.00 1371 reject_low 15 ALIGNMENT 0 Y12-14e04.q1k chr05 62 615 177097 177096 F 554 0.00 1371 reject_low 10 ALIGNMENT 0 Y12-14e04.q1k chr09 62 614 197587 197586 F 553 0.00 1371 reject_low 18 ALIGNMENT 0 Y12-14e04.q1k chr04 247 62 987433 987432 C 186 0.00 1371 reject_low 4 ALIGNMENT 0 Y12-14e04.q1k chr04 62 438 803134 803133 F 377 0.00 1371 reject_low 7 ALIGNMENT 74 Y12-14e04.q1k chr07 616 689 541853 541926 F 74 100.00 1371 reject_low 23 ALIGNMENT 0 Y12-14e04.q1k chr07 512 615 535525 541852 F 104 0.00 1371 reject_low 23 ALIGNMENT 0 Y12-14e04.q1k chr02 62 615 645161 645160 F 554 0.00 1371 reject_low 14 ALIGNMENT 0 Y12-14e04.q1k chr10 613 62 116009 116008 C 552 0.00 1371 reject_low 12 ALIGNMENT 0 Y12-14e04.q1k chr03 62 247 90482 90481 F 186 0.00 1371 reject_low 20 ALIGNMENT 78 Y12-14e04.q1k chr09 610 690 370407 370487 F 81 98.77 1371 reject_low 8 ALIGNMENT 43 Y12-14e04.q1k chr04 511 248 987166 987432 C 264 75.38 1371 reject_low 4 ALIGNMENT 26 Y12-14e04.q1k chr12 439 511 796992 797066 F 73 80.82 1371 reject_low 24 ALIGNMENT 0 Y12-14e04.q1k chr03 610 62 82539 82538 C 549 0.00 1371 reject_low 5 ALIGNMENT 1030 Y12-14e05.p1k chr12 1115 18 451882 452987 C 1098 98.27 1116 reject_low 2 ALIGNMENT 607 Y12-14e05.p1k chr12 1115 430 489850 490543 C 686 96.65 1116 reject_low 3 ALIGNMENT 977 Y12-14e05.q1k chr12 36 1155 457829 458968 F 1120 96.96 1410 accept 0 ALIGNMENT 0 Y12-14e05.p1k chr12 429 62 490544 490543 C 368 0.00 1116 reject_low 3 ALIGNMENT 1030 Y12-14e05.p1k chr12 1115 18 461019 462124 C 1098 98.27 1116 accept 0 ALIGNMENT 977 Y12-14e05.q1k chr12 36 1155 466966 468105 F 1120 96.96 1410 reject_low 1 ALIGNMENT 866 Y12-14e06.q1k chr04 33 1035 656311 657307 F 1003 96.41 1450 accept 0 ALIGNMENT 1034 Y12-14e06.p1k chr04 1185 27 661243 662408 C 1159 97.24 1186 accept 0 ALIGNMENT 520 Y12-14e07.q1k chr04 1034 158 726210 727085 C 877 86.77 1410 accept 0 ALIGNMENT 993 Y12-14e08.q1k chr15 33 1136 834396 835503 F 1104 97.28 1474 accept 0 ALIGNMENT 812 Y12-14e08.p1k chr15 926 2 839013 839930 C 925 97.84 1246 accept 0 ALIGNMENT 806 Y12-14e09.q1k chr12 1082 33 477943 478998 C 1050 93.33 1397 ambiguous_trans 17 ALIGNMENT 809 Y12-14e09.q1k chr10 33 1082 475278 476333 F 1050 93.43 1397 ambiguous_trans 15 ALIGNMENT 806 Y12-14e09.q1k chr13 33 1082 187065 188120 F 1050 93.33 1397 ambiguous_trans 18 ALIGNMENT 983 Y12-14e09.q1k chr02 33 1082 223937 224992 F 1050 98.86 1397 ambiguous_trans 1 ALIGNMENT 932 Y12-14e09.q1k chr05 1082 33 494460 495515 C 1050 97.24 1397 ambiguous_trans 6 ALIGNMENT 803 Y12-14e09.q1k chr12 33 1082 653725 654780 F 1050 93.24 1397 ambiguous_trans 22 ALIGNMENT 821 Y12-14e09.q1k chr16 1082 33 852594 853649 C 1050 93.81 1397 ambiguous_trans 11 ALIGNMENT 932 Y12-14e09.q1k chr08 1082 33 545573 546628 C 1050 97.24 1397 ambiguous_trans 7 ALIGNMENT 806 Y12-14e09.q1k chr15 33 1082 597716 598771 F 1050 93.33 1397 ambiguous_trans 21 ALIGNMENT 803 Y12-14e09.q1k chr16 1082 33 806606 807661 C 1050 93.24 1397 ambiguous_trans 23 ALIGNMENT 947 Y12-14e09.q1k chr07 1082 33 819361 820416 C 1050 97.71 1397 ambiguous_trans 3 ALIGNMENT 714 Y12-14e09.p1k chr11 820 5 84409 85212 C 816 97.43 1183 accept 0 ALIGNMENT 950 Y12-14e09.q1k chr13 1082 33 358967 360022 C 1050 97.81 1397 ambiguous_trans 2 ALIGNMENT 803 Y12-14e09.q1k chr16 33 1082 847312 848367 F 1050 93.24 1397 ambiguous_trans 24 ALIGNMENT 932 Y12-14e09.q1k chr14 1082 33 98573 99628 C 1050 97.24 1397 ambiguous_trans 8 ALIGNMENT 818 Y12-14e09.q1k chr12 33 1082 596044 597099 F 1050 93.71 1397 ambiguous_trans 12 ALIGNMENT 842 Y12-14e09.q1k chr04 1082 33 880263 881318 C 1050 94.48 1397 ambiguous_trans 10 ALIGNMENT 806 Y12-14e09.q1k chr15 33 1082 120603 121658 F 1050 93.33 1397 ambiguous_trans 20 ALIGNMENT 935 Y12-14e09.q1k chr12 1082 33 217050 218105 C 1050 97.33 1397 ambiguous_trans_ua 5 ALIGNMENT 864 Y12-14e09.q1k chr14 33 1082 522061 523098 F 1050 95.71 1397 ambiguous_trans 9 ALIGNMENT 812 Y12-14e09.q1k chr13 1082 33 374665 375720 C 1050 93.52 1397 ambiguous_trans 14 ALIGNMENT 806 Y12-14e09.q1k chr13 33 1082 199232 200287 F 1050 93.33 1397 ambiguous_trans 19 ALIGNMENT 806 Y12-14e09.q1k chr05 1082 33 445361 446416 C 1050 93.33 1397 ambiguous_trans 16 ALIGNMENT 812 Y12-14e09.q1k chr10 33 1082 480862 481917 F 1050 93.52 1397 ambiguous_trans 13 ALIGNMENT 941 Y12-14e09.q1k chr02 33 1082 262471 263529 F 1050 97.62 1397 ambiguous_trans 4 ALIGNMENT 760 Y12-14e10.p1k chr04 879 1 118413 119281 C 879 97.50 1219 accept 0 ALIGNMENT 957 Y12-14e10.q1k chr04 36 1161 113989 115114 F 1126 96.18 1486 accept 0 ALIGNMENT 747 Y12-14e11.p1k chr04 886 24 125610 126459 C 863 96.99 1164 accept 0 ALIGNMENT 948 Y12-14e11.q1k chr04 30 1165 122081 123237 F 1136 96.04 1402 accept 0 ALIGNMENT 935 Y12-14e12.q1k chr16 35 1043 690966 691976 F 1009 98.91 1445 reject_bad_break 0 ALIGNMENT 26 Y12-14e12.p1k chr16 36 3 696361 696395 C 34 94.12 1180 reject_bad_break 0 ALIGNMENT 0 Y12-14e12.p1k chr16 36 37 696376 696360 C 0 0.00 1180 reject_bad_break 0 ALIGNMENT 664 Y12-14e12.p1k chr16 809 37 695607 696375 C 773 96.12 1180 reject_bad_break 0 ALIGNMENT 902 Y12-14e13.q1k chr16 1064 33 555967 556994 C 1032 97.48 1426 accept 0 ALIGNMENT 926 Y12-14e13.p1k chr16 11 1039 551751 552773 F 1029 97.67 1104 accept 0 ALIGNMENT 23 Y12-14e15.q1k chr14 55 157 659161 659263 F 103 74.76 1357 reject_low 1 ALIGNMENT 713 Y12-14e15.p1k chr13 884 26 685339 686181 C 859 96.62 1120 accept 0 ALIGNMENT 0 Y12-14e15.q1k chr14 158 575 659264 659678 F 418 0.00 1357 reject_low 1 ALIGNMENT 1001 Y12-14e15.q1k chr13 34 1151 681570 682703 F 1118 97.50 1357 accept 0 ALIGNMENT 59 Y12-14e15.q1k chr14 576 926 659679 660029 F 351 72.65 1357 reject_low 1 ALIGNMENT 0 Y12-14e16.q1k chr03 996 992 62770 62748 C 5 0.00 1404 reject_bad_break 0 ALIGNMENT 45 Y12-14e16.q1k chr03 1090 997 62671 62769 C 94 86.17 1404 reject_bad_break 0 ALIGNMENT 889 Y12-14e16.q1k chr03 991 37 62749 63702 C 955 97.70 1404 reject_bad_break 0 ALIGNMENT 829 Y12-14e16.p1k chr03 2 964 58217 59167 F 963 96.47 1144 reject_bad_break 0 ALIGNMENT 0 Y12-14e16.q1k chr04 983 62 20563 20562 C 922 0.00 1404 reject_low 1 ALIGNMENT 24 Y12-14e16.q1k chr04 1024 984 20522 20562 C 41 97.56 1404 reject_low 1 ALIGNMENT 933 Y12-14e17.q1k chr14 40 1159 646671 647799 F 1120 95.98 1385 accept 0 ALIGNMENT 925 Y12-14e17.p1k chr14 1032 30 649672 650669 C 1003 98.50 1077 accept 0 ALIGNMENT 978 Y12-14e18.q1k chr09 41 1194 376381 377544 F 1154 96.53 1433 accept 0 ALIGNMENT 0 Y12-14e18.q1k chr15 270 62 427992 427991 C 209 0.00 1433 reject_low 2 ALIGNMENT 0 Y12-14e18.q1k chr15 270 62 427938 427937 C 209 0.00 1433 reject_low 3 ALIGNMENT 0 Y12-14e18.q1k chr15 903 302 427908 427907 C 602 0.00 1433 reject_low 3 ALIGNMENT 0 Y12-14e18.q1k chr11 903 302 576133 576132 C 602 0.00 1433 reject_low 1 ALIGNMENT 0 Y12-14e18.q1k chr11 270 62 576163 576162 C 209 0.00 1433 reject_low 1 ALIGNMENT 27 Y12-14e18.q1k chr11 301 271 576132 576162 C 31 100.00 1433 reject_low 1 ALIGNMENT 0 Y12-14e18.q1k chr15 903 302 427962 427961 C 602 0.00 1433 reject_low 2 ALIGNMENT 27 Y12-14e18.q1k chr15 301 271 427961 427991 C 31 100.00 1433 reject_low 2 ALIGNMENT 21 Y12-14e18.q1k chr15 301 271 427907 427937 C 31 93.55 1433 reject_low 3 ALIGNMENT 905 Y12-14e18.p1k chr09 1082 13 380631 381690 C 1070 96.36 1183 accept 0 ALIGNMENT 1030 Y12-14e19.q1k chr12 30 1124 465142 466238 F 1095 98.45 1372 reject_low 1 ALIGNMENT 0 Y12-14e19.p1k chr12 351 62 472583 472582 C 290 0.00 1097 reject_low 4 ALIGNMENT 94 Y12-14e19.p1k chr06 730 837 31622 31729 F 108 98.15 1097 reject_low 3 ALIGNMENT 0 Y12-14e19.p1k chr12 789 471 485697 485696 C 319 0.00 1097 reject_low 6 ALIGNMENT 128 Y12-14e19.p1k chr12 470 337 489348 489481 C 134 98.51 1097 reject_low 2 ALIGNMENT 0 Y12-14e19.p1k chr12 789 471 489349 489348 C 319 0.00 1097 reject_low 2 ALIGNMENT 119 Y12-14e19.p1k chr12 470 352 472464 472582 C 119 100.00 1097 reject_low 4 ALIGNMENT 119 Y12-14e19.p1k chr12 470 352 485696 485814 C 119 100.00 1097 reject_low 6 ALIGNMENT 0 Y12-14e19.p1k chr12 336 62 489482 489481 C 275 0.00 1097 reject_low 2 ALIGNMENT 0 Y12-14e19.p1k chr12 351 62 468931 468930 C 290 0.00 1097 reject_low 1 ALIGNMENT 119 Y12-14e19.p1k chr12 470 352 482044 482162 C 119 100.00 1097 reject_low 5 ALIGNMENT 0 Y12-14e19.p1k chr12 351 62 485815 485814 C 290 0.00 1097 reject_low 6 ALIGNMENT 825 Y12-14e19.p1k chr12 1041 20 459113 460145 C 1022 95.79 1097 accept 0 ALIGNMENT 1030 Y12-14e19.q1k chr12 30 1124 456005 457101 F 1095 98.45 1372 accept 0 ALIGNMENT 0 Y12-14e19.p1k chr12 351 62 482163 482162 C 290 0.00 1097 reject_low 5 ALIGNMENT 0 Y12-14e19.p1k chr12 789 471 482045 482044 C 319 0.00 1097 reject_low 5 ALIGNMENT 0 Y12-14e19.p1k chr12 789 471 472465 472464 C 319 0.00 1097 reject_low 4 ALIGNMENT 0 Y12-14e19.p1k chr06 62 729 31622 31621 F 668 0.00 1097 reject_low 3 ALIGNMENT 584 Y12-14e19.p1k chr12 1041 352 468250 468930 C 690 96.96 1097 reject_low 1 ALIGNMENT 945 Y12-14e20.p1k chr08 17 1053 234887 235922 F 1037 97.40 1128 accept 0 ALIGNMENT 953 Y12-14e20.q1k chr08 1096 29 237995 239062 C 1068 97.94 1383 accept 0 ALIGNMENT 1045 Y12-14e21.q1k chr02 1223 37 706504 707695 C 1187 97.14 1347 accept 0 ALIGNMENT 924 Y12-14e21.p1k chr02 15 1019 703402 704400 F 1005 98.11 1039 accept 0 ALIGNMENT 745 Y12-14e22.q1k chr01 996 38 132941 133899 C 959 94.26 1361 accept 0 ALIGNMENT 598 Y12-14e22.p1k chr01 62 764 129790 130480 F 703 96.59 1336 accept 0 ALIGNMENT 756 Y12-14e23.p1k chr13 873 21 441765 442614 C 853 97.66 1074 accept 0 ALIGNMENT 927 Y12-14e23.q1k chr13 34 1111 440035 441099 F 1078 97.22 1393 accept 0 ALIGNMENT 806 Y12-14e24.p1k chr14 919 25 555778 556669 C 895 98.44 1038 accept 0 ALIGNMENT 1026 Y12-14e24.q1k chr14 37 1203 552716 553897 F 1167 97.00 1330 accept 0 ALIGNMENT 986 Y12-14f02.q1k chr13 1225 40 456823 458025 C 1186 95.78 1434 accept 0 ALIGNMENT 975 Y12-14f02.p1k chr13 19 1126 451722 452820 F 1108 97.29 1129 accept 0 ALIGNMENT 1026 Y12-14f03.q1k chr10 1200 36 508849 510028 C 1165 96.22 1437 accept 0 ALIGNMENT 1022 Y12-14f03.p1k chr10 18 1122 503719 504826 F 1105 98.19 1133 accept 0 ALIGNMENT 723 Y12-14f04.q1k chr13 814 27 653507 654297 C 788 97.84 1416 accept 0 ALIGNMENT 617 Y12-14f04.p1k chr13 40 772 650151 650877 F 733 96.86 1314 accept 0 ALIGNMENT 862 Y12-14f05.p1k chr15 1164 142 215174 216185 C 1023 95.41 1165 reject_bad_break 0 ALIGNMENT 1090 Y12-14f05.q1k chr15 36 1255 211495 212724 F 1220 97.05 1441 reject_bad_break 0 ALIGNMENT 82 Y12-14f05.p1k chr15 118 25 216176 216269 C 94 96.81 1165 reject_bad_break 0 ALIGNMENT 0 Y12-14f05.p1k chr15 141 119 216186 216175 C 23 0.00 1165 reject_bad_break 0 ALIGNMENT 893 Y12-14f07.q1k chr15 1111 37 671560 672626 C 1075 96.00 1530 accept 0 ALIGNMENT 379 Y12-14f07.p1k chr15 26 586 666912 667463 F 561 90.55 1218 accept 0 ALIGNMENT 572 Y12-14f08.q1k scplasm1 892 37 5097 5941 C 856 91.24 1572 accept 0 ALIGNMENT 0 Y12-14f08.q1k vc_6 469 408 5264 5263 C 62 0.00 1572 reject_low 1 ALIGNMENT 315 Y12-14f08.q1k vc_6 407 37 5263 5634 C 371 96.23 1572 reject_low 1 ALIGNMENT 997 Y12-14f09.q1k chr15 36 1202 942814 943994 F 1167 95.72 1468 accept 0 ALIGNMENT 776 Y12-14f09.p1k chr15 863 2 947813 948669 C 862 97.56 1178 accept 0 ALIGNMENT 948 Y12-14f10.q1k chr12 1204 34 446396 447562 C 1171 94.53 1519 accept 0 ALIGNMENT 649 Y12-14f10.p1k chr12 40 756 443480 444192 F 717 97.77 1311 accept 0 ALIGNMENT 926 Y12-14f11.q1k chr14 1088 37 717078 718141 C 1052 97.34 1431 accept 0 ALIGNMENT 744 Y12-14f11.p1k chr14 1 864 714221 715080 F 864 96.30 1184 accept 0 ALIGNMENT 677 Y12-14f12.p1k chr14 822 54 740942 741702 C 769 97.14 1411 accept 0 ALIGNMENT 818 Y12-14f12.q1k chr14 34 998 737471 738442 F 965 95.96 1464 accept 0 ALIGNMENT 546 Y12-14f13.p1k chr13 11 808 191904 192678 F 798 91.98 1210 accept_trans 0 ALIGNMENT 932 Y12-14f13.q1k chr13 1080 35 202600 203663 C 1046 97.61 1382 accept_trans 0 ALIGNMENT 605 Y12-14f14.p1k chr13 684 2 145843 146531 C 683 97.07 1200 accept 0 ALIGNMENT 927 Y12-14f14.q1k chr13 36 1139 141955 143069 F 1104 96.11 1482 accept 0 ALIGNMENT 879 Y12-14f16.p1k chr09 11 1028 62426 63431 F 1018 97.35 1219 accept 0 ALIGNMENT 866 Y12-14f16.q1k chr09 1106 35 67181 68248 C 1072 95.90 1532 accept 0 ALIGNMENT 1008 Y12-14f17.q1k chr13 40 1146 668297 669414 F 1107 97.83 1414 accept 0 ALIGNMENT 865 Y12-14f17.p1k chr13 962 5 672082 673028 C 958 97.81 1142 accept 0 ALIGNMENT 0 Y12-14f18.q1k chr02 795 737 279148 279147 C 59 0.00 1508 reject_low 1 ALIGNMENT 128 Y12-14f18.q1k chr02 736 36 279147 279853 C 701 73.47 1508 reject_low 1 ALIGNMENT 915 Y12-14f18.q1k chr04 1102 35 463184 464240 C 1068 96.54 1508 accept 0 ALIGNMENT 832 Y12-14f18.p1k chr04 1 975 460135 461104 F 975 97.03 1182 accept 0 ALIGNMENT 888 Y12-14f19.p1k chr15 17 1061 314068 315097 F 1045 96.84 1114 accept 0 ALIGNMENT 851 Y12-14f19.q1k chr15 935 34 317170 318069 C 902 98.67 1422 accept 0 ALIGNMENT 921 Y12-14f20.p1k chr15 14 1047 124618 125638 F 1034 97.87 1173 accept 0 ALIGNMENT 164 Y12-14f20.p1k chr04 966 421 1443958 1444501 C 546 77.66 1173 reject_low 1 ALIGNMENT 971 Y12-14f20.q1k chr15 1136 36 128834 129951 C 1101 98.00 1372 accept 0 ALIGNMENT 0 Y12-14f20.p1k chr04 420 62 1444502 1444501 C 359 0.00 1173 reject_low 1 ALIGNMENT 678 Y12-14f21.p1k chr14 1 768 414377 415137 F 768 97.40 1125 accept 0 ALIGNMENT 868 Y12-14f21.q1k chr14 1076 28 417940 418994 C 1049 95.81 1396 accept 0 ALIGNMENT 90 Y12-14f22.q1k vc_7 144 1 5019 5172 C 144 90.28 444 reject_vc 6 ALIGNMENT 93 Y12-14f22.q1k vc_1 1 144 2741 2894 F 144 90.97 444 reject_vc 0 ALIGNMENT 93 Y12-14f22.q1k vc_4 144 1 5447 5600 C 144 90.97 444 reject_vc 3 ALIGNMENT 93 Y12-14f22.q1k vc_2 1 144 2374 2527 F 144 90.97 444 reject_vc 1 ALIGNMENT 93 Y12-14f22.q1k vc_5 1 144 2608 2761 F 144 90.97 444 reject_vc 4 ALIGNMENT 93 Y12-14f22.q1k vc_3 1 144 2741 2894 F 144 90.97 444 reject_vc 2 ALIGNMENT 93 Y12-14f22.q1k vc_7 144 1 2364 2517 C 144 90.97 444 reject_vc 5 ALIGNMENT 854 Y12-14f23.q1k chr16 33 960 620374 621301 F 928 98.60 1377 accept 0 ALIGNMENT 816 Y12-14f23.p1k chr16 914 18 624443 625334 C 897 98.44 1012 accept 0 ALIGNMENT 0 Y12-14f24.q1k chr04 62 386 1402173 1402172 F 325 0.00 1345 reject_low 1 ALIGNMENT 988 Y12-14f24.q1k chr08 41 1279 126759 128005 F 1239 95.16 1345 accept 0 ALIGNMENT 264 Y12-14f24.q1k chr04 387 770 1402173 1402556 F 384 89.84 1345 reject_low 1 ALIGNMENT 0 Y12-14f24.q1k chr04 771 839 1402556 1402555 F 69 0.00 1345 reject_low 1 ALIGNMENT 718 Y12-14f24.p1k chr08 863 16 130664 131499 C 848 96.34 1009 accept 0 ALIGNMENT 790 Y12-14g01.q1k chr16 32 944 203036 203939 F 913 96.71 1390 accept 0 ALIGNMENT 946 Y12-14g01.p1k chr16 1055 15 206396 207432 C 1041 98.08 1071 accept 0 ALIGNMENT 904 Y12-14g02.p1k chr07 991 3 505351 506335 C 989 98.18 1114 accept 0 ALIGNMENT 800 Y12-14g02.q1k chr07 37 924 501283 502163 F 888 98.20 1470 accept 0 ALIGNMENT 945 Y12-14g04.q1k chr16 37 1203 347556 348735 F 1167 94.94 1431 accept 0 ALIGNMENT 796 Y12-14g04.p1k chr16 971 13 352050 352992 C 959 96.77 1107 accept 0 ALIGNMENT 791 Y12-14g05.q1k chr12 911 32 464317 465191 C 880 97.73 1368 accept 0 ALIGNMENT 238 Y12-14g05.p1k chr12 443 928 451419 451895 F 486 87.86 1110 reject_low 1 ALIGNMENT 0 Y12-14g05.p1k chr12 62 442 451419 451418 F 381 0.00 1110 reject_low 1 ALIGNMENT 791 Y12-14g05.q1k chr12 911 32 455180 456054 C 880 97.73 1368 reject_low 1 ALIGNMENT 547 Y12-14g05.p1k chr12 1 928 460094 461032 F 928 89.66 1110 accept 0 ALIGNMENT 886 Y12-14g06.p1k chr05 15 1092 494196 495263 F 1078 95.73 1166 ambiguous_trans 6 ALIGNMENT 760 Y12-14g06.p1k chr13 1107 15 199471 200551 C 1093 91.67 1166 ambiguous_trans 19 ALIGNMENT 775 Y12-14g06.p1k chr16 18 1107 852333 853410 F 1090 92.20 1166 ambiguous_trans 11 ALIGNMENT 766 Y12-14g06.p1k chr10 1107 15 481101 482181 C 1093 91.86 1166 ambiguous_trans 16 ALIGNMENT 763 Y12-14g06.p1k chr13 15 1107 374401 375481 F 1093 91.77 1166 ambiguous_trans 18 ALIGNMENT 763 Y12-14g06.p1k chr12 1107 15 653964 655044 C 1093 91.77 1166 ambiguous_trans 17 ALIGNMENT 892 Y12-14g06.p1k chr07 11 1107 819092 820177 F 1097 95.53 1166 ambiguous_trans 4 ALIGNMENT 748 Y12-14g06.p1k chr16 1107 15 847551 848631 C 1093 91.31 1166 ambiguous_trans 23 ALIGNMENT 766 Y12-14g06.p1k chr07 1107 15 538904 539984 C 1093 91.86 1166 ambiguous_trans 15 ALIGNMENT 894 Y12-14g06.p1k chr02 1116 15 262701 263793 C 1102 95.55 1166 ambiguous_trans 2 ALIGNMENT 745 Y12-14g06.p1k chr16 18 1107 806345 807422 F 1090 91.28 1166 ambiguous_trans 24 ALIGNMENT 913 Y12-14g06.p1k chr13 11 1092 358698 359770 F 1082 96.49 1166 ambiguous_trans 3 ALIGNMENT 895 Y12-14g06.p1k chr14 1107 15 522282 523362 C 1093 95.70 1166 ambiguous_trans 5 ALIGNMENT 763 Y12-14g06.p1k chr12 11 1107 477674 478759 F 1097 91.70 1166 ambiguous_trans 13 ALIGNMENT 760 Y12-14g06.p1k chr05 11 1107 445092 446177 F 1097 91.61 1166 ambiguous_trans 14 ALIGNMENT 775 Y12-14g06.p1k chr15 1107 15 597955 599035 C 1093 92.13 1166 ambiguous_trans 10 ALIGNMENT 763 Y12-14g06.p1k chr04 11 1107 988415 989500 F 1097 91.70 1166 ambiguous_trans 12 ALIGNMENT 757 Y12-14g06.p1k chr10 1107 18 475517 476594 C 1090 91.65 1166 ambiguous_trans 21 ALIGNMENT 916 Y12-14g06.q1k chr07 1166 38 701869 703015 C 1129 95.66 1430 accept 0 ALIGNMENT 883 Y12-14g06.p1k chr08 15 1092 545309 546376 F 1078 95.64 1166 ambiguous_trans 8 ALIGNMENT 748 Y12-14g06.p1k chr13 1107 15 187304 188384 C 1093 91.31 1166 ambiguous_trans 22 ALIGNMENT 880 Y12-14g06.p1k chr14 15 1107 98309 99389 F 1093 95.24 1166 ambiguous_trans 9 ALIGNMENT 760 Y12-14g06.p1k chr12 1107 18 596283 597360 C 1090 91.74 1166 ambiguous_trans 20 ALIGNMENT 883 Y12-14g06.p1k chr12 15 1107 216786 217866 F 1093 95.33 1166 ambiguous_trans_ua 7 ALIGNMENT 933 Y12-14g06.p1k chr02 1116 15 224167 225256 C 1102 96.64 1166 ambiguous_trans 1 ALIGNMENT 905 Y12-14g07.p1k chr16 1056 15 385604 386641 C 1042 97.12 1142 accept 0 ALIGNMENT 897 Y12-14g07.q1k chr16 33 1137 381318 382415 F 1105 95.02 1478 accept 0 ALIGNMENT 1005 Y12-14g08.q1k chr09 1187 40 264803 265956 C 1148 96.08 1477 accept 0 ALIGNMENT 969 Y12-14g08.p1k chr09 11 1164 262057 263199 F 1154 96.10 1171 accept 0 ALIGNMENT 553 Y12-14g09.p1k chr12 100 763 451875 452525 F 664 95.93 1438 accept 0 ALIGNMENT 553 Y12-14g09.p1k chr12 100 763 461012 461662 F 664 95.93 1438 accept 1 ALIGNMENT 981 Y12-14g09.q1k chr12 1164 32 454829 455967 C 1133 96.47 1465 accept 0 ALIGNMENT 532 Y12-14g09.p1k chr12 100 763 489843 490493 F 664 94.88 1438 reject_low 2 ALIGNMENT 981 Y12-14g09.q1k chr12 1164 32 463966 465104 C 1133 96.47 1465 accept 1 ALIGNMENT 160 Y12-14g10.q1k chr13 877 240 280839 281477 C 638 75.71 1496 reject_low 1 ALIGNMENT 23 Y12-14g10.q1k chr13 89 45 281628 281672 C 45 84.44 1496 reject_low 1 ALIGNMENT 961 Y12-14g10.q1k chr13 1185 37 277616 278771 C 1149 95.47 1496 accept 0 ALIGNMENT 0 Y12-14g10.q1k chr13 239 90 281478 281627 C 150 0.00 1496 reject_low 1 ALIGNMENT 641 Y12-14g10.p1k chr13 81 893 275410 276212 F 813 94.59 1392 accept 0 ALIGNMENT 679 Y12-14g11.p1k chr06 855 14 60121 60951 C 842 95.13 1083 accept 0 ALIGNMENT 944 Y12-14g11.q1k chr06 32 1115 56636 57739 F 1084 96.49 1405 accept 0 ALIGNMENT 543 Y12-14g13.q1k chr08 735 71 296768 297423 C 665 95.19 1458 accept 0 ALIGNMENT 1024 Y12-14g14.q1k chr14 34 1212 739174 740343 F 1179 96.61 1468 accept 0 ALIGNMENT 586 Y12-14g16.p1k chr13 829 43 373555 374337 C 787 93.65 1306 ambiguous_trans 8 ALIGNMENT 691 Y12-14g16.p1k chr13 829 43 357857 358639 C 787 97.97 1306 ambiguous_trans 3 ALIGNMENT 586 Y12-14g16.p1k chr05 829 43 493350 494132 C 787 93.65 1306 ambiguous_trans 6 ALIGNMENT 691 Y12-14g16.p1k chr07 43 829 540048 540830 F 787 97.97 1306 ambiguous_trans 2 ALIGNMENT 682 Y12-14g16.p1k chr10 43 829 482245 483027 F 787 97.59 1306 ambiguous_trans 4 ALIGNMENT 910 Y12-14g16.q1k chr04 1075 36 994295 995336 C 1040 97.50 1514 accept 0 ALIGNMENT 500 Y12-14g16.p1k chr15 43 791 121986 122732 F 749 90.79 1306 ambiguous_trans 24 ALIGNMENT 673 Y12-14g16.p1k chr14 829 43 97463 98245 C 787 97.20 1306 ambiguous_trans 5 ALIGNMENT 512 Y12-14g16.p1k chr10 43 791 476661 477407 F 749 91.32 1306 ambiguous_trans 18 ALIGNMENT 599 Y12-14g16.p1k chr04 43 791 1210974 1211720 F 749 95.06 1306 ambiguous_trans 13 ALIGNMENT 583 Y12-14g16.p1k chr12 829 43 215940 216722 C 787 93.52 1306 ambiguous_trans_ua 11 ALIGNMENT 515 Y12-14g16.p1k chr13 43 791 188448 189194 F 749 91.46 1306 ambiguous_trans 16 ALIGNMENT 500 Y12-14g16.p1k chr13 43 791 200615 201361 F 749 90.79 1306 ambiguous_trans 23 ALIGNMENT 583 Y12-14g16.p1k chr02 43 829 263857 264639 F 787 93.39 1306 ambiguous_trans 10 ALIGNMENT 515 Y12-14g16.p1k chr16 43 791 848695 849441 F 749 91.46 1306 ambiguous_trans 17 ALIGNMENT 512 Y12-14g16.p1k chr16 791 43 851520 852266 C 749 91.32 1306 ambiguous_trans 20 ALIGNMENT 512 Y12-14g16.p1k chr16 791 43 805532 806278 C 749 91.32 1306 ambiguous_trans 19 ALIGNMENT 586 Y12-14g16.p1k chr15 43 829 599099 599881 F 787 93.52 1306 ambiguous_trans 9 ALIGNMENT 500 Y12-14g16.p1k chr05 791 43 444287 445033 C 749 90.79 1306 ambiguous_trans 22 ALIGNMENT 586 Y12-14g16.p1k chr07 829 43 818251 819033 C 787 93.52 1306 ambiguous_trans 7 ALIGNMENT 691 Y12-14g16.p1k chr02 43 829 225320 226102 F 787 97.97 1306 ambiguous_trans 1 ALIGNMENT 599 Y12-14g16.p1k chr04 791 43 987610 988356 C 749 95.06 1306 ambiguous_trans 12 ALIGNMENT 506 Y12-14g16.p1k chr01 791 43 161133 161879 C 749 91.05 1306 ambiguous_trans 21 ALIGNMENT 515 Y12-14g16.p1k chr04 43 791 1100046 1100792 F 749 91.46 1306 ambiguous_trans 15 ALIGNMENT 599 Y12-14g16.p1k chr12 43 791 655108 655854 F 749 95.06 1306 ambiguous_trans 14 ALIGNMENT 932 Y12-14g17.q1k chr13 25 1153 634914 636059 F 1129 95.75 1423 accept 0 ALIGNMENT 894 Y12-14g17.p1k chr13 1020 11 637869 638862 C 1010 97.52 1098 accept 0 ALIGNMENT 22 Y12-14g18.p1k chr12 712 761 459836 459880 F 50 90.00 1191 reject_bad_break 0 ALIGNMENT 662 Y12-14g18.p1k chr12 4 706 459119 459821 F 703 99.29 1191 reject_bad_break 0 ALIGNMENT 0 Y12-14g18.p1k chr12 62 559 489348 489347 F 498 0.00 1191 reject_low 3 ALIGNMENT 0 Y12-14g18.q1k chr12 818 717 489755 489754 C 102 0.00 1426 reject_low 3 ALIGNMENT 117 Y12-14g18.p1k chr12 560 676 485696 485812 F 117 100.00 1191 reject_low 7 ALIGNMENT 942 Y12-14g18.q1k chr12 1150 35 460482 461604 C 1116 95.70 1426 reject_bad_break 0 ALIGNMENT 659 Y12-14g18.q1k chr12 716 35 489754 490435 C 682 99.12 1426 reject_low 3 ALIGNMENT 916 Y12-14g18.q1k chr12 1073 35 451424 452467 C 1039 96.92 1426 reject_low 1 ALIGNMENT 0 Y12-14g18.p1k chr06 614 301 31623 31622 C 314 0.00 1191 reject_low 4 ALIGNMENT 648 Y12-14g18.p1k chr12 4 676 468256 468928 F 673 99.85 1191 reject_low 2 ALIGNMENT 117 Y12-14g18.p1k chr12 560 676 472464 472580 F 117 100.00 1191 reject_low 5 ALIGNMENT 94 Y12-14g18.p1k chr06 300 193 31622 31729 C 108 98.15 1191 reject_low 4 ALIGNMENT 119 Y12-14g18.p1k chr12 560 693 489348 489481 F 134 96.27 1191 reject_low 3 ALIGNMENT 0 Y12-14g18.p1k chr12 62 559 472464 472463 F 498 0.00 1191 reject_low 5 ALIGNMENT 0 Y12-14g18.p1k chr12 62 559 482044 482043 F 498 0.00 1191 reject_low 6 ALIGNMENT 0 Y12-14g18.p1k chr06 192 62 31730 31729 C 131 0.00 1191 reject_low 4 ALIGNMENT 0 Y12-14g18.p1k chr12 62 559 485696 485695 F 498 0.00 1191 reject_low 7 ALIGNMENT 0 Y12-14g18.p1k chr12 707 711 459822 459835 F 5 0.00 1191 reject_bad_break 0 ALIGNMENT 117 Y12-14g18.p1k chr12 560 676 482044 482160 F 117 100.00 1191 reject_low 6 ALIGNMENT 452 Y12-14g19.q1k chr14 837 83 544209 544956 C 755 87.68 1386 accept 0 ALIGNMENT 897 Y12-14g20.q1k chr10 1070 34 641227 642279 C 1037 96.72 1385 accept 0 ALIGNMENT 517 Y12-14g20.p1k chr10 57 737 636721 637377 F 681 95.15 1367 accept 0 ALIGNMENT 1035 Y12-14g21.q1k chr04 1269 35 726546 727797 C 1235 96.03 1349 accept 0 ALIGNMENT 910 Y12-14g21.p1k chr04 14 1008 722020 723006 F 995 98.39 1048 accept 0 ALIGNMENT 817 Y12-14g22.p1k chr13 928 14 778909 779818 C 915 98.36 1092 accept_chi 1 ALIGNMENT 960 Y12-14g22.q1k chr16 37 1190 879019 880178 F 1154 95.75 1392 accept_chi 0 ALIGNMENT 1059 Y12-14g23.q1k chr07 34 1257 142556 143782 F 1224 96.08 1321 accept 0 ALIGNMENT 813 Y12-14g23.p1k chr07 920 4 145692 146600 C 917 98.26 1048 accept 0 ALIGNMENT 726 Y12-14g24.p1k chr12 847 5 464197 465028 C 843 96.80 1019 accept 0 ALIGNMENT 0 Y12-14g24.q1k chr12 123 447 489754 489753 F 325 0.00 1416 reject_low 2 ALIGNMENT 698 Y12-14g24.q1k chr12 32 947 460491 461419 F 916 93.23 1416 accept 0 ALIGNMENT 638 Y12-14g24.q1k chr12 99 947 451420 452282 F 849 92.82 1416 reject_low 1 ALIGNMENT 726 Y12-14g24.p1k chr12 847 5 455060 455891 C 843 96.80 1019 reject_low 1 ALIGNMENT 360 Y12-14g24.q1k chr12 448 947 489754 490250 F 500 91.60 1416 reject_low 2 ALIGNMENT 20 Y12-14h01.p1k chr14 449 421 333262 333290 C 29 100.00 1080 reject_low 3 ALIGNMENT 928 Y12-14h01.q1k chr10 1147 36 152630 153753 C 1112 96.40 1395 accept 0 ALIGNMENT 22 Y12-14h01.p1k chr11 420 455 381283 381318 F 36 97.22 1080 reject_low 2 ALIGNMENT 0 Y12-14h01.p1k chr11 62 419 381283 381282 F 358 0.00 1080 reject_low 2 ALIGNMENT 322 Y12-14h01.q1k chr11 36 367 555485 555816 F 332 99.40 1395 reject_low 1 ALIGNMENT 0 Y12-14h01.p1k chr14 420 62 333291 333290 C 359 0.00 1080 reject_low 3 ALIGNMENT 0 Y12-14h01.p1k chr14 792 450 333263 333262 C 343 0.00 1080 reject_low 3 ALIGNMENT 0 Y12-14h01.p1k chr11 456 792 381318 381317 F 337 0.00 1080 reject_low 2 ALIGNMENT 894 Y12-14h01.p1k chr10 16 1032 149662 150660 F 1017 97.54 1080 accept 0 ALIGNMENT 0 Y12-14h01.q1k chr11 368 856 555816 555815 F 489 0.00 1395 reject_low 1 ALIGNMENT 34 Y12-14h03.q1k chr12 806 908 459839 459941 F 103 79.61 1469 reject_bad_break 0 ALIGNMENT 126 Y12-14h03.q1k chr12 653 781 489348 489476 F 129 99.22 1469 reject_low 3 ALIGNMENT 119 Y12-14h03.q1k chr12 653 771 472464 472582 F 119 100.00 1469 reject_low 5 ALIGNMENT 0 Y12-14h03.q1k chr12 62 652 472464 472463 F 591 0.00 1469 reject_low 5 ALIGNMENT 0 Y12-14h03.q1k chr06 285 62 31730 31729 C 224 0.00 1469 reject_low 4 ALIGNMENT 808 Y12-14h03.p1k chr12 878 3 462019 462882 C 876 98.52 1161 reject_bad_break 0 ALIGNMENT 0 Y12-14h03.q1k chr12 62 652 482044 482043 F 591 0.00 1469 reject_low 6 ALIGNMENT 94 Y12-14h03.q1k chr06 393 286 31622 31729 C 108 98.15 1469 reject_low 4 ALIGNMENT 700 Y12-14h03.q1k chr12 33 794 459055 459816 F 762 98.56 1469 reject_bad_break 0 ALIGNMENT 808 Y12-14h03.p1k chr12 878 3 452882 453745 C 876 98.52 1161 reject_low 1 ALIGNMENT 0 Y12-14h03.q1k chr12 62 652 485696 485695 F 591 0.00 1469 reject_low 7 ALIGNMENT 119 Y12-14h03.q1k chr12 653 771 482044 482162 F 119 100.00 1469 reject_low 6 ALIGNMENT 0 Y12-14h03.q1k chr12 795 805 459817 459838 F 11 0.00 1469 reject_bad_break 0 ALIGNMENT 690 Y12-14h03.q1k chr12 33 771 468192 468930 F 739 98.92 1469 reject_low 2 ALIGNMENT 0 Y12-14h03.q1k chr06 760 394 31623 31622 C 367 0.00 1469 reject_low 4 ALIGNMENT 119 Y12-14h03.q1k chr12 653 771 485696 485814 F 119 100.00 1469 reject_low 7 ALIGNMENT 0 Y12-14h03.q1k chr12 62 652 489348 489347 F 591 0.00 1469 reject_low 3 ALIGNMENT 736 Y12-14h04.p1k chr07 3 846 653873 654700 F 844 97.16 1214 accept 0 ALIGNMENT 821 Y12-14h04.q1k chr07 976 34 657776 658718 C 943 96.92 1449 accept 0 ALIGNMENT 914 Y12-14h07.q1k chr07 1103 35 697830 698900 C 1069 96.63 1451 accept_chi 1 ALIGNMENT 937 Y12-14h07.p1k chr12 1113 3 397505 398609 C 1111 96.58 1116 accept_chi 0 ALIGNMENT 575 Y12-14h08.q1k chr13 696 31 103461 104124 C 666 96.40 1421 accept 0 ALIGNMENT 678 Y12-14h08.p1k chr13 55 803 99621 100364 F 749 98.26 1386 accept 0 ALIGNMENT 740 Y12-14h09.p1k chr14 878 5 206037 206907 C 874 96.22 1202 accept 0 ALIGNMENT 894 Y12-14h09.q1k chr14 35 1019 200965 201956 F 985 97.56 1468 accept 0 ALIGNMENT 78 Y12-14h10.p1k chr07 495 235 1071451 1071711 C 261 77.78 1491 reject_low 2 ALIGNMENT 20 Y12-14h10.p1k chr02 702 677 801454 801479 C 26 92.31 1491 ambiguous_tel 0 ALIGNMENT 203 Y12-14h10.p1k chr16 742 226 932269 932784 C 517 81.04 1491 ambiguous_tel 1 ALIGNMENT 249 Y12-14h10.p1k chr02 552 126 801597 802020 C 427 87.59 1491 ambiguous_tel 0 ALIGNMENT 0 Y12-14h10.p1k chr07 234 152 1071712 1071711 C 83 0.00 1491 reject_low 2 ALIGNMENT 0 Y12-14h10.p1k chr16 225 152 932785 932784 C 74 0.00 1491 ambiguous_tel 1 ALIGNMENT 0 Y12-14h10.p1k chr07 617 496 1071452 1071451 C 122 0.00 1491 reject_low 2 ALIGNMENT 0 Y12-14h10.p1k chr02 676 553 801480 801596 C 124 0.00 1491 ambiguous_tel 0 ALIGNMENT 655 Y12-14h11.p1k chr16 803 10 335764 336561 C 794 95.34 1070 accept 0 ALIGNMENT 931 Y12-14h11.q1k chr16 35 1078 332375 333420 F 1044 97.41 1484 accept 0 ALIGNMENT 665 Y12-14h13.p1k chr11 889 96 152534 153319 C 794 97.10 1243 accept 0 ALIGNMENT 908 Y12-14h14.q1k chr13 34 1165 800606 801749 F 1132 94.88 1437 accept 0 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 7362 7361 F 155 0.00 1395 reject_low 120 ALIGNMENT 172 Y12-14h15.q1k chr08 697 361 560505 560841 C 337 84.87 1395 reject_low 152 ALIGNMENT 0 Y12-14h15.q1k chr16 332 730 1885 1884 F 399 0.00 1395 reject_low 306 ALIGNMENT 0 Y12-14h15.q1k chr12 329 328 2191 7329 F 0 0.00 1395 reject_low 388 ALIGNMENT 0 Y12-14h15.q1k chr12 62 612 1683 1682 F 551 0.00 1395 reject_low 334 ALIGNMENT 70 Y12-14h15.q1k chr16 678 552 946357 946483 C 127 85.83 1395 reject_low 279 ALIGNMENT 0 Y12-14h15.q1k chr09 460 730 2288 2287 F 271 0.00 1395 reject_low 233 ALIGNMENT 43 Y12-14h15.q1k chr16 228 295 1818 1885 F 68 89.71 1395 reject_low 350 ALIGNMENT 40 Y12-14h15.q1k chr08 228 295 1842 1909 F 68 88.24 1395 reject_low 355 ALIGNMENT 0 Y12-14h15.q1k chr05 698 730 1914 1913 F 33 0.00 1395 reject_low 35 ALIGNMENT 237 Y12-14h15.q1k chr10 217 699 1813 2295 F 483 84.47 1395 reject_low 109 ALIGNMENT 0 Y12-14h15.q1k chr16 62 215 1734 1733 F 154 0.00 1395 reject_low 293 ALIGNMENT 94 Y12-14h15.q1k chr07 697 464 1089166 1089399 C 234 80.77 1395 reject_low 226 ALIGNMENT 0 Y12-14h15.q1k chr12 227 62 1069692 1069691 C 166 0.00 1395 reject_low 89 ALIGNMENT 0 Y12-14h15.q1k chr02 679 730 1587 1586 F 52 0.00 1395 reject_low 323 ALIGNMENT 0 Y12-14h15.q1k chr15 227 62 1089427 1089426 C 166 0.00 1395 reject_low 264 ALIGNMENT 0 Y12-14h15.q1k chr02 62 288 1486 1485 F 227 0.00 1395 reject_low 148 ALIGNMENT 0 Y12-14h15.p1k chr05 705 90 5896 5895 C 616 0.00 1372 reject_low 19,33,34,35,40,41,42,45,48,49,52,55,58,60,66,69,72,73,75,83,84,85,92,93 ALIGNMENT 0 Y12-14h15.q1k chr14 62 587 1585 1584 F 526 0.00 1395 reject_low 329 ALIGNMENT 0 Y12-14h15.q1k chr12 360 332 1070027 1076286 C 29 0.00 1395 reject_low 382 ALIGNMENT 0 Y12-14h15.q1k chr02 698 730 2074 2073 F 33 0.00 1395 reject_low 113 ALIGNMENT 43 Y12-14h15.q1k chr12 295 228 1069624 1069691 C 68 89.71 1395 reject_low 89 ALIGNMENT 49 Y12-14h15.q1k chr08 678 588 560740 560830 C 91 85.71 1395 reject_low 327 ALIGNMENT 0 Y12-14h15.q1k chr08 698 730 1879 1878 F 33 0.00 1395 reject_low 215 ALIGNMENT 130 Y12-14h15.q1k chr06 361 697 893 1229 F 337 80.71 1395 reject_low 186 ALIGNMENT 0 Y12-14h15.q1k chr07 730 683 1089326 1089325 C 48 0.00 1395 reject_low 338 ALIGNMENT 0 Y12-14h15.q1k chr12 730 570 1069603 1069602 C 161 0.00 1395 reject_low 44 ALIGNMENT 104 Y12-14h15.q1k chr05 433 678 1470 1715 F 246 81.71 1395 reject_low 58 ALIGNMENT 0 Y12-14h15.q1k chr02 319 730 2127 2126 F 412 0.00 1395 reject_low 287 ALIGNMENT 113 Y12-14h15.q1k chr06 397 699 893 1195 F 303 80.20 1395 reject_low 201 ALIGNMENT 0 Y12-14h15.q1k chr15 730 698 1089426 1089425 C 33 0.00 1395 reject_low 230 ALIGNMENT 98 Y12-14h15.q1k chr04 472 220 1530089 1530341 C 253 81.82 1395 reject_low 243 ALIGNMENT 413 Y12-14h15.q1k chr12 641 36 1069602 1070207 C 606 90.26 1395 reject_low 16 ALIGNMENT 0 Y12-14h15.q1k chr12 730 679 1069854 1069853 C 52 0.00 1395 reject_low 385 ALIGNMENT 0 Y12-14h15.q1k chr14 62 215 1933 1932 F 154 0.00 1395 reject_low 361 ALIGNMENT 0 Y12-14h15.q1k chr14 62 216 1646 1645 F 155 0.00 1395 reject_low 156 ALIGNMENT 0 Y12-14h15.q1k chr02 62 227 1677 1676 F 166 0.00 1395 reject_low 144 ALIGNMENT 0 Y12-14h15.q1k chr08 62 612 1651 1650 F 551 0.00 1395 reject_low 309 ALIGNMENT 0 Y12-14h15.q1k chr16 659 62 946484 946483 C 598 0.00 1395 reject_low 375 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 2082 2081 F 155 0.00 1395 reject_low 285 ALIGNMENT 94 Y12-14h15.q1k chr04 697 464 1530260 1530493 C 234 80.77 1395 reject_low 225 ALIGNMENT 146 Y12-14h15.q1k chr12 397 678 1683 1964 F 282 85.11 1395 reject_low 178 ALIGNMENT 55 Y12-14h15.q1k chr12 217 331 7614 7728 F 115 85.22 1395 reject_low 303 ALIGNMENT 0 Y12-14h15.q1k chr13 62 515 1678 1677 F 454 0.00 1395 reject_low 274 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 7499 7498 F 52 0.00 1395 reject_low 396 ALIGNMENT 0 Y12-14h15.q1k chr06 698 730 1049 1048 F 33 0.00 1395 reject_low 248 ALIGNMENT 173 Y12-14h15.q1k chr05 569 217 574893 575245 C 353 84.70 1395 reject_low 43 ALIGNMENT 0 Y12-14h15.q1k chr14 62 515 1585 1584 F 454 0.00 1395 reject_low 275 ALIGNMENT 0 Y12-14h15.q1k chr08 730 698 560614 560613 C 33 0.00 1395 reject_low 227 ALIGNMENT 0 Y12-14h15.q1k chr10 698 730 2185 2184 F 33 0.00 1395 reject_low 98 ALIGNMENT 0 Y12-14h15.q1k chr05 62 515 1481 1480 F 454 0.00 1395 reject_low 75 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1542 1541 F 155 0.00 1395 reject_low 34 ALIGNMENT 0 Y12-14h15.q1k chr12 534 730 7750 7749 F 197 0.00 1395 reject_low 206 ALIGNMENT 0 Y12-14h15.q1k chr09 62 288 1686 1685 F 227 0.00 1395 reject_low 100 ALIGNMENT 0 Y12-14h15.q1k chr13 390 730 2091 2090 F 341 0.00 1395 reject_low 291 ALIGNMENT 0 Y12-14h15.q1k chr10 694 730 1821 1820 F 37 0.00 1395 reject_low 284 ALIGNMENT 122 Y12-14h15.q1k chr07 693 397 1089098 1089394 C 297 81.48 1395 reject_low 193 ALIGNMENT 0 Y12-14h15.q1k chr05 62 227 1805 1804 F 166 0.00 1395 reject_low 72 ALIGNMENT 0 Y12-14h15.q1k chr09 62 612 1686 1685 F 551 0.00 1395 reject_low 369 ALIGNMENT 193 Y12-14h15.q1k chr12 361 697 1683 2019 F 337 86.94 1395 reject_low 145 ALIGNMENT 94 Y12-14h15.q1k chr05 697 464 575089 575322 C 234 80.77 1395 reject_low 61 ALIGNMENT 0 Y12-14h15.q1k chr08 730 606 560418 560417 C 125 0.00 1395 reject_low 99 ALIGNMENT 49 Y12-14h15.q1k chr14 588 678 1585 1675 F 91 85.71 1395 reject_low 329 ALIGNMENT 0 Y12-14h15.q1k chr16 730 606 945963 945962 C 125 0.00 1395 reject_low 133 ALIGNMENT 0 Y12-14h15.q1k chr07 730 698 1089023 1089022 C 33 0.00 1395 reject_low 103 ALIGNMENT 0 Y12-14h15.q1k chr12 730 296 1069625 1069624 C 435 0.00 1395 reject_low 89 ALIGNMENT 0 Y12-14h15.q1k chr08 432 62 560842 560841 C 371 0.00 1395 reject_low 188 ALIGNMENT 123 Y12-14h15.q1k chr12 220 533 1902 2215 F 314 81.53 1395|0,9 reject_low 396 ALIGNMENT 0 Y12-14h15.q1k chr08 730 679 560705 560704 C 52 0.00 1395 reject_low 313 ALIGNMENT 0 Y12-14h15.q1k chr06 698 730 977 976 F 33 0.00 1395 reject_low 286 ALIGNMENT 0 Y12-14h15.q1k chr05 587 62 575307 575306 C 526 0.00 1395 reject_low 81 ALIGNMENT 55 Y12-14h15.q1k chr12 678 552 1076552 1076678 C 127 81.89 1395 reject_low 79 ALIGNMENT 0 Y12-14h15.q1k chr05 730 390 574894 574893 C 341 0.00 1395 reject_low 74 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 1875 1874 F 33 0.00 1395 reject_low 258 ALIGNMENT 0 Y12-14h15.q1k chr05 730 606 574894 574893 C 125 0.00 1395 reject_low 38 ALIGNMENT 0 Y12-14h15.q1k chr08 332 730 1909 1908 F 399 0.00 1395 reject_low 354 ALIGNMENT 160 Y12-14h15.q1k chr07 697 361 1089058 1089394 C 337 83.68 1395 reject_low 161 ALIGNMENT 173 Y12-14h15.q1k chr07 569 217 1088970 1089322 C 353 84.70 1395 reject_low 153 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 1748 1747 F 52 0.00 1395 reject_low 334 ALIGNMENT 0 Y12-14h15.q1k chr12 730 642 1076266 1076265 C 89 0.00 1395 ambiguous_tel 12 ALIGNMENT 0 Y12-14h15.q1k chr05 219 62 575207 575206 C 158 0.00 1395 reject_low 56 ALIGNMENT 0 Y12-14h15.q1k chr08 62 360 1651 1650 F 299 0.00 1395 reject_low 146 ALIGNMENT 0 Y12-14h15.q1k chr09 62 396 1686 1685 F 335 0.00 1395 reject_low 173 ALIGNMENT 94 Y12-14h15.q1k chr08 697 464 560613 560846 C 234 80.77 1395 reject_low 227 ALIGNMENT 0 Y12-14h15.q1k chr02 62 432 1486 1485 F 371 0.00 1395 reject_low 267 ALIGNMENT 0 Y12-14h15.q1k chr12 390 730 7750 7749 F 341 0.00 1395 reject_low 290 ALIGNMENT 0 Y12-14h15.q1k chr13 534 730 2091 2090 F 197 0.00 1395 reject_low 207 ALIGNMENT 0 Y12-14h15.q1k chr05 432 62 575318 575317 C 371 0.00 1395 reject_low 50 ALIGNMENT 64 Y12-14h15.q1k chr16 389 216 945962 946135 C 174 81.03 1395 reject_low 294 ALIGNMENT 149 Y12-14h15.q1k chr09 397 693 1686 1982 F 297 84.51 1395 reject_low 173 ALIGNMENT 0 Y12-14h15.q1k chr16 296 730 1885 1884 F 435 0.00 1395 reject_low 350 ALIGNMENT 103 Y12-14h15.q1k chr06 228 553 940 1265 F 326 78.83 1395 reject_low 232 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 2079 2078 F 155 0.00 1395 reject_low 388,393 ALIGNMENT 0 Y12-14h15.q1k chr12 730 282 1069603 1069602 C 449 0.00 1395 reject_low 91 ALIGNMENT 0 Y12-14h15.q1k chr09 698 730 2166 2165 F 33 0.00 1395 ambiguous_tel 0 ALIGNMENT 0 Y12-14h15.q1k chr05 662 730 2058 2057 F 69 0.00 1395 reject_low 40 ALIGNMENT 0 Y12-14h15.q1k chr10 62 551 1680 1679 F 490 0.00 1395 reject_low 284 ALIGNMENT 0 Y12-14h15.q1k chr16 432 62 946495 946494 C 371 0.00 1395 reject_low 260 ALIGNMENT 165 Y12-14h15.q1k chr06 504 697 892 1085 F 194 95.88 1395 reject_low 149 ALIGNMENT 0 Y12-14h15.q1k chr07 730 642 1088971 1088970 C 89 0.00 1395 ambiguous_tel 4 ALIGNMENT 70 Y12-14h15.q1k chr06 228 517 976 1265 F 290 76.55 1395 reject_low 288 ALIGNMENT 90 Y12-14h15.q1k chr07 425 228 1088970 1089167 C 198 83.84 1395 reject_low 252 ALIGNMENT 0 Y12-14h15.q1k chr16 227 62 946304 946303 C 166 0.00 1395 reject_low 150 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 2046 2045 F 155 0.00 1395 reject_low 233 ALIGNMENT 0 Y12-14h15.q1k chr07 730 570 1088971 1088970 C 161 0.00 1395 reject_low 153 ALIGNMENT 0 Y12-14h15.p1k chr05 90 126 570969 570981 F 37 0.00 1372 reject_low 18 ALIGNMENT 0 Y12-14h15.q1k chr16 62 227 1818 1817 F 166 0.00 1395 reject_low 350 ALIGNMENT 150 Y12-14h15.q1k chr02 216 525 1845 2154 F 310 84.84 1395 reject_low 175 ALIGNMENT 0 Y12-14h15.q1k chr02 700 730 2004 2003 F 31 0.00 1395 reject_low 94 ALIGNMENT 0 Y12-14h15.q1k chr10 62 215 2172 2171 F 154 0.00 1395 reject_low 371 ALIGNMENT 101 Y12-14h15.q1k chr13 220 472 1814 2066 F 253 82.21 1395 reject_low 236 ALIGNMENT 0 Y12-14h15.q1k chr05 442 730 2054 2053 F 289 0.00 1395 reject_low 73 ALIGNMENT 238 Y12-14h15.q1k chr15 605 217 1089229 1089617 C 389 88.69 1395 reject_low 126 ALIGNMENT 0 Y12-14h15.q1k chr12 62 219 1902 1901 F 158 0.00 1395 reject_low 396 ALIGNMENT 92 Y12-14h15.q1k chr02 216 419 1953 2156 F 204 83.82 1395 reject_low 247 ALIGNMENT 252 Y12-14h15.q1k chr06 325 869 893 1435 F 545 82.94 1395 reject_low 32 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 1522 1521 F 155 0.00 1395 reject_low 94 ALIGNMENT 283 Y12-14h15.q1k chr05 217 697 1542 2022 F 481 87.73 1395 reject_low 34 ALIGNMENT 0 Y12-14h15.q1k chr05 679 730 1535 1534 F 52 0.00 1395 reject_low 83 ALIGNMENT 0 Y12-14h15.q1k chr06 463 730 1246 1245 F 268 0.00 1395 reject_low 300 ALIGNMENT 0 Y12-14h15.q1k chr05 515 62 575307 575306 C 454 0.00 1395 reject_low 70 ALIGNMENT 0 Y12-14h15.q1k chr05 698 730 2022 2021 F 33 0.00 1395 reject_low 34 ALIGNMENT 55 Y12-14h15.q1k chr05 331 217 574915 575029 C 115 85.22 1395 reject_low 77 ALIGNMENT 106 Y12-14h15.q1k chr08 464 697 1646 1879 F 234 82.48 1395 reject_low 215 ALIGNMENT 170 Y12-14h15.q1k chr12 569 217 1069602 1069954 C 353 84.42 1395 reject_low 44 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1076318 1076317 C 33 0.00 1395 reject_low 37 ALIGNMENT 41 Y12-14h15.q1k chr04 682 613 1530419 1530488 C 70 87.14 1395 reject_low 337 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1069799 1069798 C 33 0.00 1395 reject_low 383,384 ALIGNMENT 0 Y12-14h15.q1k chr13 679 730 1804 1803 F 52 0.00 1395 reject_low 314 ALIGNMENT 0 Y12-14h15.q1k chr10 694 730 2109 2108 F 37 0.00 1395 reject_low 96 ALIGNMENT 336 Y12-14h15.q1k chr05 923 289 574672 575317 C 635 85.35 1395 reject_low 20 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 1964 1963 F 52 0.00 1395 reject_low 178 ALIGNMENT 0 Y12-14h15.q1k chr12 730 679 1069890 1069889 C 52 0.00 1395 reject_low 380 ALIGNMENT 0 Y12-14h15.q1k chr12 468 469 1070027 1076293 C 0 0.00 1395 reject_low 384 ALIGNMENT 0 Y12-14h15.q1k chr02 698 730 2146 2145 F 33 0.00 1395 reject_low 144 ALIGNMENT 0 Y12-14h15.q1k chr12 227 62 1076355 1076354 C 166 0.00 1395 reject_low 377 ALIGNMENT 0 Y12-14h15.q1k chr04 612 62 1530489 1530488 C 551 0.00 1395 reject_low 337 ALIGNMENT 90 Y12-14h15.q1k chr13 228 425 1894 2091 F 198 83.84 1395 reject_low 254 ALIGNMENT 43 Y12-14h15.q1k chr12 613 678 1683 1748 F 66 89.39 1395 reject_low 334 ALIGNMENT 0 Y12-14h15.q1k chr05 324 62 575318 575317 C 263 0.00 1395 reject_low 36 ALIGNMENT 0 Y12-14h15.q1k chr15 730 642 1089230 1089229 C 89 0.00 1395 ambiguous_tel 13 ALIGNMENT 43 Y12-14h15.q1k chr12 228 295 7661 7728 F 68 89.71 1395 reject_low 346 ALIGNMENT 0 Y12-14h15.q1k chr06 406 730 1261 1260 F 325 0.00 1395 reject_low 368 ALIGNMENT 0 Y12-14h15.q1k chr05 62 659 1481 1480 F 598 0.00 1395 reject_low 93 ALIGNMENT 0 Y12-14h15.q1k chr12 292 293 1070023 1076289 C 0 0.00 1395 reject_low 377 ALIGNMENT 90 Y12-14h15.q1k chr16 228 425 1710 1907 F 198 83.84 1395 reject_low 256 ALIGNMENT 0 Y12-14h15.q1k chr07 730 332 1088993 1088992 C 399 0.00 1395 reject_low 302 ALIGNMENT 0 Y12-14h15.q1k chr16 215 62 946136 946135 C 154 0.00 1395 reject_low 294 ALIGNMENT 0 Y12-14h15.q1k chr14 62 219 1721 1720 F 158 0.00 1395 reject_low 237 ALIGNMENT 0 Y12-14h15.q1k chr08 620 730 1909 1908 F 111 0.00 1395 reject_low 146 ALIGNMENT 64 Y12-14h15.q1k chr09 552 693 1697 1838 F 142 82.39 1395 reject_low 283 ALIGNMENT 223 Y12-14h15.q1k chr12 253 697 1683 2127 F 445 84.72 1395 reject_low 131 ALIGNMENT 244 Y12-14h15.q1k chr10 325 678 1669 2022 F 354 90.96 1395 reject_low 116 ALIGNMENT 444 Y12-14h15.q1k chr09 36 697 1505 2166 F 662 89.88 1395 ambiguous_tel 0 ALIGNMENT 0 Y12-14h15.q1k chr16 390 730 1907 1906 F 341 0.00 1395 reject_low 293 ALIGNMENT 33 Y12-14h15.q1k chr16 216 281 1842 1907 F 66 84.85 1395 reject_low 363 ALIGNMENT 0 Y12-14h15.q1k chr13 679 730 1840 1839 F 52 0.00 1395 reject_low 274 ALIGNMENT 31 Y12-14h15.q1k chr10 613 678 1669 1734 F 66 83.33 1395 reject_low 370 ALIGNMENT 0 Y12-14h15.q1k chr10 700 730 2295 2294 F 31 0.00 1395 reject_low 109 ALIGNMENT 148 Y12-14h15.q1k chr09 217 472 1974 2229 F 256 88.28 1395 reject_low 399 ALIGNMENT 0 Y12-14h15.q1k chr06 698 730 1085 1084 F 33 0.00 1395 reject_low 149 ALIGNMENT 478 Y12-14h15.q1k chr05 36 699 1289 1952 F 664 91.57 1395 reject_low 17 ALIGNMENT 0 Y12-14h15.q1k chr05 730 426 574894 574893 C 305 0.00 1395 reject_low 67 ALIGNMENT 0 Y12-14h15.q1k chr05 730 683 575249 575248 C 48 0.00 1395 reject_low 86 ALIGNMENT 0 Y12-14h15.q1k chr08 427 730 1932 1931 F 304 0.00 1395 reject_low 270 ALIGNMENT 72 Y12-14h15.q1k chr05 228 462 1805 2039 F 235 79.15 1395 reject_low 72 ALIGNMENT 132 Y12-14h15.q1k chr13 433 697 1667 1931 F 265 84.15 1395 reject_low 181 ALIGNMENT 0 Y12-14h15.q1k chr06 62 227 1048 1047 F 166 0.00 1395 reject_low 352 ALIGNMENT 226 Y12-14h15.q1k chr16 605 217 945962 946350 C 389 87.66 1395 reject_low 133 ALIGNMENT 0 Y12-14h15.q1k chr02 698 730 1894 1893 F 33 0.00 1395 reject_low 148 ALIGNMENT 0 Y12-14h15.q1k chr12 219 62 1069916 1069915 C 158 0.00 1395 reject_low 57 ALIGNMENT 96 Y12-14h15.q1k chr08 253 502 1651 1900 F 250 81.60 1395 reject_low 249 ALIGNMENT 0 Y12-14h15.q1k chr12 62 432 1683 1682 F 371 0.00 1395 reject_low 266 ALIGNMENT 47 Y12-14h15.q1k chr06 228 441 1048 1261 F 214 76.17 1395 reject_low 352 ALIGNMENT 119 Y12-14h15.q1k chr02 216 491 1881 2156 F 276 83.33 1395 reject_low 202 ALIGNMENT 0 Y12-14h15.q1k chr02 62 215 1845 1844 F 154 0.00 1395 reject_low 175 ALIGNMENT 0 Y12-14h15.q1k chr06 622 730 1261 1260 F 109 0.00 1395 reject_low 246 ALIGNMENT 0 Y12-14h15.q1k chr15 612 62 1089654 1089653 C 551 0.00 1395 reject_low 342 ALIGNMENT 0 Y12-14h15.q1k chr16 694 730 1779 1778 F 37 0.00 1395 reject_low 197 ALIGNMENT 0 Y12-14h15.q1k chr09 698 730 2022 2021 F 33 0.00 1395 reject_low 167 ALIGNMENT 0 Y12-14h15.q1k chr14 62 288 1574 1573 F 227 0.00 1395 reject_low 25 ALIGNMENT 157 Y12-14h15.q1k chr04 697 361 1530152 1530488 C 337 83.38 1395 reject_low 166 ALIGNMENT 0 Y12-14h15.q1k chr07 216 62 1089215 1089214 C 155 0.00 1395 reject_low 219 ALIGNMENT 0 Y12-14h15.q1k chr10 679 730 1734 1733 F 52 0.00 1395 reject_low 370 ALIGNMENT 0 Y12-14h15.q1k chr07 730 390 1088971 1088970 C 341 0.00 1395 reject_low 289 ALIGNMENT 52 Y12-14h15.q1k chr12 331 217 1076287 1076401 C 115 84.35 1395|3,0 reject_low 378,382 ALIGNMENT 0 Y12-14h15.q1k chr09 698 730 1950 1949 F 33 0.00 1395 reject_low 210 ALIGNMENT 0 Y12-14h15.q1k chr14 62 396 1574 1573 F 335 0.00 1395 reject_low 195 ALIGNMENT 55 Y12-14h15.q1k chr13 217 331 1955 2069 F 115 85.22 1395 reject_low 304 ALIGNMENT 0 Y12-14h15.q1k chr16 463 62 946500 946499 C 402 0.00 1395 reject_low 198 ALIGNMENT 0 Y12-14h15.q1k chr16 730 296 945985 945984 C 435 0.00 1395 reject_low 351 ALIGNMENT 0 Y12-14h15.q1k chr09 679 730 2039 2038 F 52 0.00 1395 reject_low 115 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 1758 1757 F 155 0.00 1395 reject_low 107 ALIGNMENT 0 Y12-14h15.q1k chr08 216 62 560662 560661 C 155 0.00 1395 reject_low 216 ALIGNMENT 0 Y12-14h15.q1k chr16 216 62 946351 946350 C 155 0.00 1395 reject_low 133 ALIGNMENT 43 Y12-14h15.q1k chr15 295 228 1089251 1089318 C 68 89.71 1395 reject_low 349 ALIGNMENT 0 Y12-14h15.q1k chr14 62 551 1585 1584 F 490 0.00 1395 reject_low 315 ALIGNMENT 0 Y12-14h15.q1k chr08 296 730 1909 1908 F 435 0.00 1395 reject_low 355 ALIGNMENT 0 Y12-14h15.q1k chr07 227 62 1089060 1089059 C 166 0.00 1395 reject_low 345 ALIGNMENT 206 Y12-14h15.q1k chr12 289 693 1683 2087 F 405 84.94 1395 reject_low 142 ALIGNMENT 0 Y12-14h15.q1k chr12 683 730 1896 1895 F 48 0.00 1395 reject_low 203 ALIGNMENT 61 Y12-14h15.q1k chr12 389 216 1069602 1069775 C 174 80.46 1395 reject_low 76 ALIGNMENT 0 Y12-14h15.q1k chr14 62 432 1574 1573 F 371 0.00 1395 reject_low 182 ALIGNMENT 0 Y12-14h15.q1k chr05 62 432 1470 1469 F 371 0.00 1395 reject_low 58 ALIGNMENT 0 Y12-14h15.q1k chr10 698 730 2005 2004 F 33 0.00 1395 reject_low 168 ALIGNMENT 0 Y12-14h15.q1k chr16 216 62 946207 946206 C 155 0.00 1395 reject_low 224 ALIGNMENT 649 Y12-14h15.p1k chr12 805 59 9840 10585 C 747 97.05 1372 ambiguous_tel 9 ALIGNMENT 33 Y12-14h15.q1k chr12 216 281 2150 2215 F 66 84.85 1395 reject_low 398 ALIGNMENT 52 Y12-14h15.q1k chr12 331 217 1069624 1069738 C 115 84.35 1395 reject_low 80 ALIGNMENT 0 Y12-14h15.q1k chr12 570 730 7750 7749 F 161 0.00 1395 reject_low 154 ALIGNMENT 416 Y12-14h15.q1k chr07 641 36 1088970 1089575 C 606 90.43 1395 ambiguous_tel 4 ALIGNMENT 413 Y12-14h15.q1k chr12 641 36 1076265 1076870 C 606 90.26 1395 ambiguous_tel 12 ALIGNMENT 0 Y12-14h15.q1k chr02 698 730 1858 1857 F 33 0.00 1395 reject_low 138 ALIGNMENT 49 Y12-14h15.q1k chr05 678 588 575216 575306 C 91 85.71 1395 reject_low 81 ALIGNMENT 0 Y12-14h15.q1k chr08 503 730 1900 1899 F 228 0.00 1395 reject_low 249 ALIGNMENT 101 Y12-14h15.q1k chr16 220 472 1630 1882 F 253 82.21 1395 reject_low 238 ALIGNMENT 0 Y12-14h15.q1k chr15 730 679 1089481 1089480 C 52 0.00 1395 reject_low 276 ALIGNMENT 0 Y12-14h15.q1k chr12 694 730 2087 2086 F 37 0.00 1395 reject_low 142 ALIGNMENT 0 Y12-14h15.q1k chr08 62 216 1759 1758 F 155 0.00 1395 reject_low 320 ALIGNMENT 0 Y12-14h15.q1k chr12 62 324 1683 1682 F 263 0.00 1395 reject_low 128 ALIGNMENT 0 Y12-14h15.q1k chr05 730 473 574919 574918 C 258 0.00 1395 reject_low 63 ALIGNMENT 0 Y12-14h15.q1k chr04 227 62 1530154 1530153 C 166 0.00 1395 reject_low 344 ALIGNMENT 0 Y12-14h15.q1k chr07 216 62 1089107 1089106 C 155 0.00 1395 reject_low 302 ALIGNMENT 0 Y12-14h15.q1k chr02 62 227 1821 1820 F 166 0.00 1395 reject_low 172 ALIGNMENT 324 Y12-14h15.q1k chr12 862 289 1076106 1076689 C 574 86.59 1395 reject_low 23 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 1928 1927 F 52 0.00 1395 reject_low 266 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 7614 7613 F 155 0.00 1395 reject_low 303 ALIGNMENT 41 Y12-14h15.q1k chr14 613 682 1574 1643 F 70 87.14 1395 reject_low 341 ALIGNMENT 170 Y12-14h15.q1k chr12 569 217 1076265 1076617 C 353 84.42 1395|9,0 reject_low 380 ALIGNMENT 0 Y12-14h15.q1k chr05 694 730 1838 1837 F 37 0.00 1395 reject_low 41 ALIGNMENT 102 Y12-14h15.q1k chr13 217 461 1847 2091 F 245 82.86 1395 reject_low 221 ALIGNMENT 649 Y12-14h15.p1k chr13 805 59 4181 4926 C 747 97.05 1372 ambiguous_tel 10 ALIGNMENT 0 Y12-14h15.q1k chr12 62 515 1694 1693 F 454 0.00 1395 reject_low 258 ALIGNMENT 90 Y12-14h15.q1k chr12 228 425 7553 7750 F 198 83.84 1395 reject_low 253 ALIGNMENT 0 Y12-14h15.q1k chr16 62 432 1483 1482 F 371 0.00 1395 reject_low 184 ALIGNMENT 87 Y12-14h15.q1k chr04 425 228 1530064 1530261 C 198 83.33 1395 reject_low 263 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 7590 7589 F 33 0.00 1395 reject_low 392 ALIGNMENT 0 Y12-14h15.q1k chr16 698 730 1711 1710 F 33 0.00 1395 reject_low 231 ALIGNMENT 0 Y12-14h15.q1k chr09 464 511 2257 2244 F 48 0.00 1395 reject_low 401 ALIGNMENT 0 Y12-14h15.q1k chr05 62 215 1901 1900 F 154 0.00 1395 reject_low 92 ALIGNMENT 0 Y12-14h15.q1k chr12 219 62 1076579 1076578 C 158 0.00 1395 reject_low 385 ALIGNMENT 0 Y12-14h15.q1k chr08 463 62 560847 560846 C 402 0.00 1395 reject_low 227 ALIGNMENT 0 Y12-14h15.q1k chr07 551 62 1089384 1089383 C 490 0.00 1395 reject_low 312 ALIGNMENT 94 Y12-14h15.q1k chr12 464 697 7321 7554 F 234 80.77 1395|5,0 reject_low 394,395 ALIGNMENT 0 Y12-14h15.q1k chr16 62 360 1483 1482 F 299 0.00 1395 reject_low 164 ALIGNMENT 0 Y12-14h15.q1k chr13 462 730 2091 2090 F 269 0.00 1395 reject_low 221 ALIGNMENT 102 Y12-14h15.q1k chr05 461 217 574893 575137 C 245 82.86 1395 reject_low 59 ALIGNMENT 220 Y12-14h15.q1k chr09 217 574 1866 2223 F 358 88.83 1395 reject_low 137 ALIGNMENT 0 Y12-14h15.q1k chr10 62 432 1669 1668 F 371 0.00 1395 reject_low 211 ALIGNMENT 49 Y12-14h15.q1k chr02 588 678 1497 1587 F 91 85.71 1395 reject_low 323 ALIGNMENT 55 Y12-14h15.q1k chr16 552 678 1494 1620 F 127 81.89 1395 reject_low 317 ALIGNMENT 64 Y12-14h15.q1k chr05 389 216 574893 575066 C 174 81.03 1395 reject_low 74 ALIGNMENT 647 Y12-14h15.p1k chr02 805 49 4506 5262 C 757 96.57 1372 ambiguous_tel 7 ALIGNMENT 117 Y12-14h15.q1k chr12 533 220 1076265 1076578 C 314 80.89 1395|9,0 reject_low 385 ALIGNMENT 182 Y12-14h15.q1k chr12 228 569 1874 2215 F 342 85.96 1395|0,9 reject_low 391 ALIGNMENT 0 Y12-14h15.q1k chr15 515 62 1089643 1089642 C 454 0.00 1395 reject_low 276 ALIGNMENT 0 Y12-14h15.q1k chr05 62 227 1877 1876 F 166 0.00 1395 reject_low 85 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 2101 2100 F 155 0.00 1395 reject_low 301 ALIGNMENT 55 Y12-14h15.q1k chr08 678 552 560704 560830 C 127 81.89 1395 reject_low 313 ALIGNMENT 63 Y12-14h15.q1k chr02 217 318 2026 2127 F 102 89.22 1395 reject_low 287 ALIGNMENT 0 Y12-14h15.q1k chr07 219 62 1089284 1089283 C 158 0.00 1395 reject_low 205 ALIGNMENT 0 Y12-14h15.q1k chr10 62 288 1669 1668 F 227 0.00 1395 reject_low 101 ALIGNMENT 55 Y12-14h15.q1k chr14 217 331 1862 1976 F 115 85.22 1395 reject_low 305 ALIGNMENT 0 Y12-14h15.q1k chr09 62 227 2021 2020 F 166 0.00 1395 reject_low 401 ALIGNMENT 64 Y12-14h15.q1k chr10 217 462 2101 2346 F 246 77.64 1395 reject_low 301 ALIGNMENT 100 Y12-14h15.q1k chr09 217 459 2046 2288 F 243 82.72 1395 reject_low 233 ALIGNMENT 101 Y12-14h15.q1k chr07 472 220 1088995 1089247 C 253 82.21 1395 reject_low 234 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 1866 1865 F 155 0.00 1395 reject_low 137 ALIGNMENT 0 Y12-14h15.q1k chr16 730 698 946123 946122 C 33 0.00 1395 reject_low 124 ALIGNMENT 0 Y12-14h15.q1k chr07 612 62 1089395 1089394 C 551 0.00 1395 reject_low 338 ALIGNMENT 0 Y12-14h15.q1k chr05 679 730 1715 1714 F 52 0.00 1395 reject_low 58 ALIGNMENT 102 Y12-14h15.q1k chr16 217 461 1663 1907 F 245 82.86 1395 reject_low 223 ALIGNMENT 0 Y12-14h15.q1k chr15 730 390 1089230 1089229 C 341 0.00 1395 reject_low 299 ALIGNMENT 0 Y12-14h15.q1k chr13 62 215 1918 1917 F 154 0.00 1395 reject_low 291 ALIGNMENT 0 Y12-14h15.q1k chr02 420 730 2156 2155 F 311 0.00 1395 reject_low 247 ALIGNMENT 0 Y12-14h15.q1k chr08 612 730 1937 1936 F 119 0.00 1395 reject_low 171 ALIGNMENT 0 Y12-14h15.q1k chr16 62 216 1519 1518 F 155 0.00 1395 reject_low 123 ALIGNMENT 122 Y12-14h15.q1k chr04 693 397 1530192 1530488 C 297 81.48 1395 reject_low 192 ALIGNMENT 0 Y12-14h15.q1k chr16 570 730 1907 1906 F 161 0.00 1395 reject_low 157 ALIGNMENT 0 Y12-14h15.q1k chr08 216 62 560770 560769 C 155 0.00 1395 reject_low 147 ALIGNMENT 157 Y12-14h15.q1k chr12 697 361 1069690 1070026 C 337 83.38 1395 reject_low 382 ALIGNMENT 0 Y12-14h15.q1k chr13 698 730 1931 1930 F 33 0.00 1395 reject_low 181 ALIGNMENT 390 Y12-14h15.q1k chr12 217 923 1719 2436 F 707 86.14 1395 reject_low 22 ALIGNMENT 0 Y12-14h15.q1k chr09 539 547 2224 2244 F 9 0.00 1395 reject_low 390 ALIGNMENT 64 Y12-14h15.q1k chr16 216 389 1734 1907 F 174 81.03 1395 reject_low 293 ALIGNMENT 0 Y12-14h15.q1k chr09 296 511 2233 2244 F 216 0.00 1395 reject_low 403 ALIGNMENT 0 Y12-14h15.q1k chr08 216 62 560554 560553 C 155 0.00 1395 reject_low 332 ALIGNMENT 0 Y12-14h15.q1k chr02 562 730 2154 2153 F 169 0.00 1395 reject_low 172 ALIGNMENT 245 Y12-14h15.q1k chr13 325 697 1667 2039 F 373 89.81 1395 reject_low 104 ALIGNMENT 0 Y12-14h15.q1k chr06 700 730 1195 1194 F 31 0.00 1395 reject_low 201 ALIGNMENT 0 Y12-14h15.q1k chr05 730 570 574894 574893 C 161 0.00 1395 reject_low 43 ALIGNMENT 0 Y12-14h15.q1k chr05 288 62 575318 575317 C 227 0.00 1395 reject_low 20 ALIGNMENT 94 Y12-14h15.q1k chr12 697 464 1076461 1076694 C 234 80.77 1395 reject_low 62 ALIGNMENT 0 Y12-14h15.q1k chr16 730 642 945963 945962 C 89 0.00 1395 reject_low 134 ALIGNMENT 0 Y12-14h15.q1k chr13 694 730 1963 1962 F 37 0.00 1395 reject_low 194 ALIGNMENT 0 Y12-14h15.q1k chr12 62 463 1678 1677 F 402 0.00 1395 reject_low 203 ALIGNMENT 0 Y12-14h15.q1k chr07 227 62 1089168 1089167 C 166 0.00 1395 reject_low 252 ALIGNMENT 0 Y12-14h15.q1k chr16 730 694 946271 946270 C 37 0.00 1395 reject_low 198 ALIGNMENT 43 Y12-14h15.q1k chr14 228 295 1909 1976 F 68 89.71 1395 reject_low 348 ALIGNMENT 99 Y12-14h15.q1k chr15 461 217 1089229 1089473 C 245 82.45 1395 reject_low 241 ALIGNMENT 0 Y12-14h15.q1k chr12 469 468 2187 7325 F 0 0.00 1395 reject_low 395 ALIGNMENT 0 Y12-14h15.q1k chr16 679 730 1584 1583 F 52 0.00 1395 reject_low 331 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1069763 1069762 C 33 0.00 1395 reject_low 381 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 1849 1848 F 155 0.00 1395 reject_low 114 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 2163 2162 F 33 0.00 1395 ambiguous_tel 3 ALIGNMENT 0 Y12-14h15.q1k chr05 679 730 1643 1642 F 52 0.00 1395 reject_low 75 ALIGNMENT 55 Y12-14h15.q1k chr16 217 331 1771 1885 F 115 85.22 1395 reject_low 306 ALIGNMENT 32 Y12-14h15.q1k chr09 216 271 2189 2244 F 56 87.50 1395 reject_low 404 ALIGNMENT 0 Y12-14h15.q1k chr12 432 426 1070027 1076264 C 7 0.00 1395 reject_low 381 ALIGNMENT 0 Y12-14h15.q1k chr10 62 227 2004 2003 F 166 0.00 1395 reject_low 191 ALIGNMENT 242 Y12-14h15.q1k chr12 697 325 1076317 1076689 C 373 89.54 1395 reject_low 37 ALIGNMENT 0 Y12-14h15.q1k chr10 694 730 1785 1784 F 37 0.00 1395 reject_low 297 ALIGNMENT 0 Y12-14h15.q1k chr08 730 390 560418 560417 C 341 0.00 1395 reject_low 295 ALIGNMENT 0 Y12-14h15.q1k chr09 62 515 1697 1696 F 454 0.00 1395 reject_low 281 ALIGNMENT 0 Y12-14h15.q1k chr14 62 360 1574 1573 F 299 0.00 1395 reject_low 163 ALIGNMENT 170 Y12-14h15.q1k chr15 569 217 1089229 1089581 C 353 84.42 1395 reject_low 159 ALIGNMENT 115 Y12-14h15.q1k chr12 464 682 1678 1896 F 219 84.93 1395 reject_low 203 ALIGNMENT 316 Y12-14h15.q1k chr07 834 289 1088839 1089394 C 546 87.18 1395 reject_low 30 ALIGNMENT 413 Y12-14h15.q1k chr04 641 36 1530064 1530669 C 606 90.26 1395 ambiguous_tel 11 ALIGNMENT 0 Y12-14h15.q1k chr12 215 62 1076331 1076330 C 154 0.00 1395 reject_low 387 ALIGNMENT 0 Y12-14h15.q1k chr04 730 570 1530065 1530064 C 161 0.00 1395 reject_low 158 ALIGNMENT 0 Y12-14h15.q1k chr16 642 730 1907 1906 F 89 0.00 1395 ambiguous_tel 6 ALIGNMENT 0 Y12-14h15.q1k chr12 683 730 1716 1715 F 48 0.00 1395 reject_low 374 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1686 1685 F 155 0.00 1395 reject_low 49 ALIGNMENT 30 Y12-14h15.q1k chr05 216 369 1901 2054 F 154 75.32 1395 reject_low 92 ALIGNMENT 0 Y12-14h15.q1k chr12 730 683 1076621 1076620 C 48 0.00 1395 reject_low 87 ALIGNMENT 0 Y12-14h15.q1k chr10 580 730 2355 2354 F 151 0.00 1395 reject_low 191 ALIGNMENT 55 Y12-14h15.q1k chr04 678 552 1530351 1530477 C 127 81.89 1395 reject_low 311 ALIGNMENT 83 Y12-14h15.q1k chr12 433 678 1683 1928 F 246 78.86 1395 reject_low 266 ALIGNMENT 0 Y12-14h15.q1k chr09 62 551 1697 1696 F 490 0.00 1395 reject_low 283 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 7427 7426 F 52 0.00 1395 reject_low 389 ALIGNMENT 49 Y12-14h15.q1k chr12 678 588 1069925 1070015 C 91 85.71 1395|0,9 reject_low 379 ALIGNMENT 167 Y12-14h15.q1k chr08 325 611 1651 1937 F 287 87.46 1395 reject_low 171 ALIGNMENT 0 Y12-14h15.q1k chr04 730 679 1530352 1530351 C 52 0.00 1395 reject_low 311 ALIGNMENT 0 Y12-14h15.q1k chr05 62 288 1470 1469 F 227 0.00 1395 reject_low 42 ALIGNMENT 0 Y12-14h15.q1k chr08 62 515 1662 1661 F 454 0.00 1395 reject_low 190 ALIGNMENT 55 Y12-14h15.q1k chr12 217 331 2079 2193 F 115 85.22 1395|0,3 reject_low 388,393 ALIGNMENT 122 Y12-14h15.q1k chr13 397 693 1667 1963 F 297 81.48 1395 reject_low 194 ALIGNMENT 0 Y12-14h15.q1k chr12 730 642 1069603 1069602 C 89 0.00 1395 reject_low 16 ALIGNMENT 0 Y12-14h15.q1k chr12 730 679 1076553 1076552 C 52 0.00 1395 reject_low 79 ALIGNMENT 0 Y12-14h15.q1k chr12 426 432 2216 7325 F 7 0.00 1395 reject_low 392 ALIGNMENT 0 Y12-14h15.q1k chr04 227 62 1530262 1530261 C 166 0.00 1395 reject_low 263 ALIGNMENT 0 Y12-14h15.q1k chr15 730 332 1089252 1089251 C 399 0.00 1395 reject_low 322 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 1558 1557 F 155 0.00 1395 reject_low 129 ALIGNMENT 0 Y12-14h15.q1k chr12 463 62 1076695 1076694 C 402 0.00 1395 reject_low 62 ALIGNMENT 97 Y12-14h15.q1k chr08 217 462 1687 1932 F 246 82.11 1395 reject_low 245 ALIGNMENT 64 Y12-14h15.q1k chr10 552 693 1680 1821 F 142 82.39 1395 reject_low 284 ALIGNMENT 0 Y12-14h15.q1k chr08 62 587 1662 1661 F 526 0.00 1395 reject_low 326 ALIGNMENT 0 Y12-14h15.q1k chr04 730 332 1530087 1530086 C 399 0.00 1395 reject_low 321 ALIGNMENT 0 Y12-14h15.q1k chr16 62 216 1663 1662 F 155 0.00 1395 reject_low 223 ALIGNMENT 0 Y12-14h15.q1k chr04 730 462 1530065 1530064 C 269 0.00 1395 reject_low 240 ALIGNMENT 0 Y12-14h15.q1k chr02 526 730 2154 2153 F 205 0.00 1395 reject_low 175 ALIGNMENT 0 Y12-14h15.q1k chr04 730 698 1530117 1530116 C 33 0.00 1395 reject_low 110 ALIGNMENT 0 Y12-14h15.q1k chr12 282 612 2216 7325 F 331 0.00 1395 reject_low 398 ALIGNMENT 0 Y12-14h15.q1k chr05 698 730 1878 1877 F 33 0.00 1395 reject_low 42 ALIGNMENT 0 Y12-14h15.q1k chr16 730 462 945963 945962 C 269 0.00 1395 reject_low 224 ALIGNMENT 129 Y12-14h15.q1k chr10 228 579 2004 2355 F 352 80.40 1395 reject_low 191 ALIGNMENT 94 Y12-14h15.q1k chr13 464 697 1662 1895 F 234 80.77 1395 reject_low 228 ALIGNMENT 0 Y12-14h15.q1k chr15 730 679 1089553 1089552 C 52 0.00 1395 reject_low 330 ALIGNMENT 0 Y12-14h15.q1k chr06 62 288 893 892 F 227 0.00 1395 reject_low 280 ALIGNMENT 0 Y12-14h15.q1k chr06 62 324 893 892 F 263 0.00 1395 reject_low 32 ALIGNMENT 666 Y12-14h15.p1k chr16 805 49 5164 5915 C 757 97.36 1372 ambiguous_tel 6 ALIGNMENT 0 Y12-14h15.q1k chr04 215 62 1530130 1530129 C 154 0.00 1395 reject_low 357 ALIGNMENT 0 Y12-14h15.q1k chr04 730 606 1530065 1530064 C 125 0.00 1395 reject_low 125 ALIGNMENT 0 Y12-14h15.q1k chr07 215 62 1089036 1089035 C 154 0.00 1395 reject_low 358 ALIGNMENT 49 Y12-14h15.q1k chr12 678 588 1076588 1076678 C 91 85.71 1395 reject_low 82 ALIGNMENT 0 Y12-14h15.q1k chr14 679 730 1675 1674 F 52 0.00 1395 reject_low 329 ALIGNMENT 0 Y12-14h15.q1k chr14 642 730 1998 1997 F 89 0.00 1395 ambiguous_tel 5 ALIGNMENT 692 Y12-14h15.p1k chr09 843 49 5612 6395 C 795 97.48 1372 ambiguous_tel 0 ALIGNMENT 0 Y12-14h15.p1k chr12 90 705 1065771 1065770 F 616 0.00 1372 reject_low 23,37,39,44,47,51,54,57,62,64,65,68,71,76,79,80,82,87,89,91,377,378,379,380,381,382,383,384,385,386,387 ALIGNMENT 0 Y12-14h15.q1k chr14 62 216 1610 1609 F 155 0.00 1395 reject_low 122 ALIGNMENT 90 Y12-14h15.q1k chr16 425 228 945962 946159 C 198 83.84 1395 reject_low 257 ALIGNMENT 0 Y12-14h15.q1k chr10 652 730 2355 2354 F 79 0.00 1395 reject_low 177 ALIGNMENT 0 Y12-14h15.q1k chr10 62 227 1932 1931 F 166 0.00 1395 reject_low 177 ALIGNMENT 0 Y12-14h15.q1k chr14 426 730 1998 1997 F 305 0.00 1395 reject_low 255 ALIGNMENT 64 Y12-14h15.q1k chr07 389 216 1088970 1089143 C 174 81.03 1395 reject_low 289 ALIGNMENT 0 Y12-14h15.q1k chr07 730 679 1089222 1089221 C 52 0.00 1395 reject_low 272 ALIGNMENT 0 Y12-14h15.q1k chr02 688 730 1668 1667 F 43 0.00 1395 reject_low 251 ALIGNMENT 173 Y12-14h15.q1k chr16 217 569 1555 1907 F 353 84.70 1395 reject_low 157 ALIGNMENT 0 Y12-14h15.q1k chr08 62 396 1651 1650 F 335 0.00 1395 reject_low 27 ALIGNMENT 0 Y12-14h15.q1k chr16 730 390 945963 945962 C 341 0.00 1395 reject_low 294 ALIGNMENT 0 Y12-14h15.q1k chr12 288 62 1076690 1076689 C 227 0.00 1395 reject_low 23 ALIGNMENT 0 Y12-14h15.q1k chr15 730 426 1089230 1089229 C 305 0.00 1395 reject_low 264 ALIGNMENT 0 Y12-14h15.q1k chr07 432 62 1089395 1089394 C 371 0.00 1395 reject_low 180 ALIGNMENT 86 Y12-14h15.q1k chr16 678 433 946249 946494 C 246 79.27 1395 reject_low 260 ALIGNMENT 223 Y12-14h15.q1k chr12 217 605 1827 2215 F 389 87.40 1395|0,9 reject_low 389 ALIGNMENT 649 Y12-14h15.p1k chr04 59 805 1526062 1526807 F 747 97.05 1372 ambiguous_tel 11 ALIGNMENT 0 Y12-14h15.q1k chr06 698 730 1229 1228 F 33 0.00 1395 reject_low 186 ALIGNMENT 0 Y12-14h15.q1k chr16 473 730 1882 1881 F 258 0.00 1395 reject_low 238 ALIGNMENT 187 Y12-14h15.q1k chr05 325 693 1470 1838 F 369 84.82 1395 reject_low 41 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 1705 1704 F 155 0.00 1395 reject_low 98 ALIGNMENT 0 Y12-14h15.q1k chr12 642 730 7750 7749 F 89 0.00 1395 ambiguous_tel 9 ALIGNMENT 0 Y12-14h15.q1k chr06 700 730 1123 1122 F 31 0.00 1395 reject_low 170 ALIGNMENT 0 Y12-14h15.q1k chr07 730 698 1089167 1089166 C 33 0.00 1395 reject_low 226 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 1791 1790 F 155 0.00 1395 reject_low 136 ALIGNMENT 0 Y12-14h15.q1k chr12 215 62 1069776 1069775 C 154 0.00 1395 reject_low 76 ALIGNMENT 55 Y12-14h15.q1k chr05 678 552 575180 575306 C 127 81.89 1395 reject_low 78 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 1971 1970 F 155 0.00 1395 reject_low 394 ALIGNMENT 0 Y12-14h15.q1k chr08 730 642 560418 560417 C 89 0.00 1395 ambiguous_tel 8 ALIGNMENT 0 Y12-14h15.q1k chr14 698 730 1802 1801 F 33 0.00 1395 reject_low 229 ALIGNMENT 0 Y12-14h15.q1k chr15 730 282 1089230 1089229 C 449 0.00 1395 reject_low 362 ALIGNMENT 0 Y12-14h15.q1k chr14 62 324 1574 1573 F 263 0.00 1395 reject_low 105 ALIGNMENT 84 Y12-14h15.q1k chr09 464 678 1681 1895 F 215 80.47 1395 reject_low 261 ALIGNMENT 173 Y12-14h15.q1k chr13 217 569 1739 2091 F 353 84.70 1395 reject_low 155 ALIGNMENT 0 Y12-14h15.q1k chr12 62 215 2150 2149 F 154 0.00 1395 reject_low 398 ALIGNMENT 0 Y12-14h15.q1k chr05 730 694 575022 575021 C 37 0.00 1395 reject_low 53 ALIGNMENT 0 Y12-14h15.q1k chr12 463 462 1070032 1076264 C 2 0.00 1395 reject_low 383 ALIGNMENT 33 Y12-14h15.q1k chr15 281 216 1089229 1089294 C 66 84.85 1395 reject_low 362 ALIGNMENT 132 Y12-14h15.q1k chr07 697 433 1089130 1089394 C 265 84.15 1395 reject_low 180 ALIGNMENT 20 Y12-14h15.q1k chr12 660 682 1694 1716 F 23 95.65 1395 reject_low 374 ALIGNMENT 237 Y12-14h15.q1k chr09 217 699 1758 2240 F 483 84.47 1395 reject_low 107 ALIGNMENT 649 Y12-14h15.p1k chr15 59 805 1085227 1085972 F 747 97.05 1372 ambiguous_tel 13 ALIGNMENT 0 Y12-14h15.q1k chr02 62 324 1486 1485 F 263 0.00 1395 reject_low 138 ALIGNMENT 237 Y12-14h15.q1k chr10 217 699 1741 2223 F 483 84.47 1395 reject_low 108 ALIGNMENT 102 Y12-14h15.q1k chr02 217 455 1918 2156 F 239 83.26 1395 reject_low 218 ALIGNMENT 0 Y12-14h15.q1k chr10 693 730 2360 2359 F 38 0.00 1395 reject_low 112 ALIGNMENT 43 Y12-14h15.q1k chr13 228 295 2002 2069 F 68 89.71 1395 reject_low 347 ALIGNMENT 0 Y12-14h15.q1k chr08 730 698 560470 560469 C 33 0.00 1395 reject_low 135 ALIGNMENT 122 Y12-14h15.q1k chr12 397 693 7326 7622 F 297 81.48 1395 reject_low 397 ALIGNMENT 0 Y12-14h15.q1k chr12 694 730 7622 7621 F 37 0.00 1395 reject_low 397 ALIGNMENT 57 Y12-14h15.q1k chr02 217 383 1990 2156 F 167 80.24 1395 reject_low 308 ALIGNMENT 77 Y12-14h15.q1k chr02 433 678 1486 1731 F 246 78.05 1395 reject_low 267 ALIGNMENT 0 Y12-14h15.q1k chr05 215 62 575067 575066 C 154 0.00 1395 reject_low 74 ALIGNMENT 0 Y12-14h15.q1k chr05 679 730 1571 1570 F 52 0.00 1395 reject_low 84 ALIGNMENT 120 Y12-14h15.q1k chr10 217 543 2029 2355 F 327 80.73 1395 reject_low 204 ALIGNMENT 0 Y12-14h15.q1k chr16 62 551 1494 1493 F 490 0.00 1395 reject_low 317 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 7554 7553 F 33 0.00 1395 reject_low 394,395 ALIGNMENT 0 Y12-14h15.q1k chr08 730 683 560773 560772 C 48 0.00 1395 reject_low 339 ALIGNMENT 0 Y12-14h15.q1k chr09 679 730 1895 1894 F 52 0.00 1395 reject_low 261 ALIGNMENT 0 Y12-14h15.q1k chr05 219 62 575171 575170 C 158 0.00 1395 reject_low 63 ALIGNMENT 0 Y12-14h15.q1k chr08 730 332 560440 560439 C 399 0.00 1395 reject_low 332 ALIGNMENT 257 Y12-14h15.q1k chr10 289 693 1669 2073 F 405 89.14 1395 reject_low 101 ALIGNMENT 0 Y12-14h15.q1k chr08 216 62 560806 560805 C 155 0.00 1395 reject_low 99 ALIGNMENT 55 Y12-14h15.q1k chr14 552 678 1585 1711 F 127 81.89 1395 reject_low 315 ALIGNMENT 0 Y12-14h15.q1k chr10 463 730 2346 2345 F 268 0.00 1395 reject_low 301 ALIGNMENT 0 Y12-14h15.q1k chr13 698 730 1895 1894 F 33 0.00 1395 reject_low 228 ALIGNMENT 245 Y12-14h15.q1k chr07 697 325 1089022 1089394 C 373 89.81 1395 reject_low 103 ALIGNMENT 0 Y12-14h15.q1k chr16 730 679 946358 946357 C 52 0.00 1395 reject_low 279 ALIGNMENT 0 Y12-14h15.q1k chr15 730 570 1089230 1089229 C 161 0.00 1395 reject_low 159 ALIGNMENT 0 Y12-14h15.q1k chr04 730 473 1530090 1530089 C 258 0.00 1395 reject_low 243 ALIGNMENT 242 Y12-14h15.q1k chr12 697 325 1069654 1070026 C 373 89.54 1395|0,4 reject_low 378 ALIGNMENT 0 Y12-14h15.q1k chr15 216 62 1089366 1089365 C 155 0.00 1395 reject_low 322 ALIGNMENT 61 Y12-14h15.q1k chr15 389 216 1089229 1089402 C 174 80.46 1395 reject_low 299 ALIGNMENT 0 Y12-14h15.q1k chr15 463 62 1089659 1089658 C 402 0.00 1395 reject_low 230 ALIGNMENT 41 Y12-14h15.q1k chr02 613 682 1486 1555 F 70 87.14 1395 reject_low 336 ALIGNMENT 0 Y12-14h15.q1k chr12 62 227 7661 7660 F 166 0.00 1395 reject_low 346 ALIGNMENT 33 Y12-14h15.q1k chr12 281 216 1069602 1069667 C 66 84.85 1395 reject_low 91 ALIGNMENT 32 Y12-14h15.p1k chr12 49 89 1065729 1065771 F 41 95.12 1372 reject_low 16,23,37,39,44,47,51,54,57,62,64,65,68,71,76,79,80,82,87,89,91,377,378,379,380,381,382,383,384,385,386,387 ALIGNMENT 0 Y12-14h15.q1k chr16 587 62 946484 946483 C 526 0.00 1395 reject_low 319 ALIGNMENT 0 Y12-14h15.q1k chr10 679 730 1878 1877 F 52 0.00 1395 reject_low 262 ALIGNMENT 72 Y12-14h15.q1k chr12 678 516 1076516 1076678 C 163 82.21 1395 reject_low 71 ALIGNMENT 0 Y12-14h15.q1k chr14 390 730 1998 1997 F 341 0.00 1395 reject_low 292 ALIGNMENT 0 Y12-14h15.q1k chr12 612 282 1070027 1076264 C 331 0.00 1395 reject_low 387 ALIGNMENT 0 Y12-14h15.q1k chr12 62 219 7473 7472 F 158 0.00 1395 reject_low 235 ALIGNMENT 0 Y12-14h15.q1k chr16 62 216 1771 1770 F 155 0.00 1395 reject_low 306 ALIGNMENT 43 Y12-14h15.q1k chr07 295 228 1088992 1089059 C 68 89.71 1395 reject_low 345 ALIGNMENT 68 Y12-14h15.q1k chr05 217 441 1830 2054 F 225 79.11 1395 reject_low 73 ALIGNMENT 49 Y12-14h15.q1k chr12 588 678 7337 7427 F 91 85.71 1395|9,0 reject_low 389 ALIGNMENT 149 Y12-14h15.q1k chr16 678 397 946213 946494 C 282 85.46 1395 reject_low 176 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 1630 1629 F 155 0.00 1395 reject_low 102 ALIGNMENT 0 Y12-14h15.q1k chr15 432 62 1089654 1089653 C 371 0.00 1395 reject_low 183 ALIGNMENT 0 Y12-14h15.q1k chr05 62 324 1470 1469 F 263 0.00 1395 reject_low 41 ALIGNMENT 0 Y12-14h15.q1k chr08 730 296 560440 560439 C 435 0.00 1395 reject_low 365 ALIGNMENT 0 Y12-14h15.q1k chr12 426 730 7750 7749 F 305 0.00 1395 reject_low 253 ALIGNMENT 20 Y12-14h15.q1k chr08 660 682 1662 1684 F 23 95.65 1395 reject_low 373 ALIGNMENT 122 Y12-14h15.q1k chr12 693 397 1069730 1070026 C 297 81.48 1395 reject_low 386 ALIGNMENT 37 Y12-14h15.q1k chr06 648 697 892 941 F 50 92.00 1395 reject_low 333 ALIGNMENT 676 Y12-14h15.p1k chr06 805 49 3342 4094 C 757 97.75 1372 reject_low 15 ALIGNMENT 0 Y12-14h15.q1k chr04 730 534 1530065 1530064 C 197 0.00 1395 reject_low 213 ALIGNMENT 87 Y12-14h15.q1k chr12 425 228 1076265 1076462 C 198 83.33 1395 reject_low 381 ALIGNMENT 0 Y12-14h15.q1k chr07 324 62 1089395 1089394 C 263 0.00 1395 reject_low 103 ALIGNMENT 0 Y12-14h15.q1k chr02 683 730 1555 1554 F 48 0.00 1395 reject_low 336 ALIGNMENT 0 Y12-14h15.q1k chr16 462 730 1907 1906 F 269 0.00 1395 reject_low 223 ALIGNMENT 0 Y12-14h15.q1k chr06 698 730 941 940 F 33 0.00 1395 reject_low 333 ALIGNMENT 0 Y12-14h15.q1k chr10 698 730 1933 1932 F 33 0.00 1395 reject_low 211 ALIGNMENT 0 Y12-14h15.q1k chr16 282 730 1907 1906 F 449 0.00 1395 reject_low 363 ALIGNMENT 0 Y12-14h15.q1k chr09 694 730 1982 1981 F 37 0.00 1395 reject_low 173 ALIGNMENT 113 Y12-14h15.q1k chr08 472 220 560442 560694 C 253 83.79 1395 reject_low 217 ALIGNMENT 111 Y12-14h15.q1k chr10 433 697 1669 1933 F 265 81.51 1395 reject_low 211 ALIGNMENT 0 Y12-14h15.q1k chr10 698 730 2149 2148 F 33 0.00 1395 ambiguous_tel 1 ALIGNMENT 49 Y12-14h15.q1k chr07 678 588 1089293 1089383 C 91 85.71 1395 reject_low 325 ALIGNMENT 72 Y12-14h15.q1k chr05 678 516 575144 575306 C 163 82.21 1395 reject_low 70 ALIGNMENT 0 Y12-14h15.q1k chr05 730 698 574982 574981 C 33 0.00 1395 reject_low 46 ALIGNMENT 101 Y12-14h15.q1k chr05 472 220 574918 575170 C 253 82.21 1395 reject_low 63 ALIGNMENT 440 Y12-14h15.q1k chr08 641 36 560417 561022 C 606 91.75 1395 ambiguous_tel 8 ALIGNMENT 49 Y12-14h15.q1k chr15 678 588 1089552 1089642 C 91 85.71 1395 reject_low 330 ALIGNMENT 0 Y12-14h15.q1k chr05 730 698 574946 574945 C 33 0.00 1395 reject_low 36 ALIGNMENT 0 Y12-14h15.p1k chr05 90 705 570968 570967 F 616 0.00 1372 reject_low 20,36,38,43,46,50,53,56,59,61,63,67,70,74,77,78,81,86,88,90 ALIGNMENT 43 Y12-14h15.q1k chr16 295 228 945984 946051 C 68 89.71 1395 reject_low 351 ALIGNMENT 0 Y12-14h15.q1k chr12 332 730 7728 7727 F 399 0.00 1395 reject_low 303 ALIGNMENT 0 Y12-14h15.q1k chr08 227 62 560615 560614 C 166 0.00 1395 reject_low 250 ALIGNMENT 160 Y12-14h15.q1k chr02 228 561 1821 2154 F 334 84.43 1395 reject_low 172 ALIGNMENT 0 Y12-14h15.q1k chr08 730 679 560561 560560 C 52 0.00 1395 reject_low 242 ALIGNMENT 43 Y12-14h15.q1k chr16 678 613 946429 946494 C 66 89.39 1395 reject_low 335 ALIGNMENT 0 Y12-14h15.q1k chr02 62 396 1486 1485 F 335 0.00 1395 reject_low 185 ALIGNMENT 160 Y12-14h15.q1k chr14 361 697 1574 1910 F 337 83.68 1395 reject_low 163 ALIGNMENT 101 Y12-14h15.q1k chr12 220 472 7473 7725 F 253 82.21 1395 reject_low 235 ALIGNMENT 0 Y12-14h15.q1k chr02 698 730 1966 1965 F 33 0.00 1395 ambiguous_tel 7 ALIGNMENT 0 Y12-14h15.q1k chr16 698 730 1747 1746 F 33 0.00 1395 reject_low 184 ALIGNMENT 0 Y12-14h15.q1k chr09 700 730 2276 2275 F 31 0.00 1395 reject_low 117 ALIGNMENT 0 Y12-14h15.q1k chr12 390 396 2216 7325 F 7 0.00 1395 reject_low 397 ALIGNMENT 0 Y12-14h15.q1k chr08 272 730 1921 1920 F 459 0.00 1395 reject_low 366 ALIGNMENT 0 Y12-14h15.q1k chr04 730 679 1530316 1530315 C 52 0.00 1395 reject_low 271 ALIGNMENT 0 Y12-14h15.q1k chr08 288 62 560842 560841 C 227 0.00 1395 reject_low 21 ALIGNMENT 0 Y12-14h15.q1k chr12 730 462 1069603 1069602 C 269 0.00 1395 reject_low 64 ALIGNMENT 0 Y12-14h15.q1k chr08 324 62 560842 560841 C 263 0.00 1395 reject_low 135 ALIGNMENT 125 Y12-14h15.q1k chr08 693 433 560581 560841 C 261 83.52 1395 reject_low 188 ALIGNMENT 257 Y12-14h15.q1k chr09 289 693 1686 2090 F 405 89.14 1395 reject_low 100 ALIGNMENT 0 Y12-14h15.q1k chr04 515 62 1530478 1530477 C 454 0.00 1395 reject_low 271 ALIGNMENT 0 Y12-14h15.q1k chr08 62 215 1866 1865 F 154 0.00 1395 reject_low 366 ALIGNMENT 0 Y12-14h15.q1k chr14 332 730 1976 1975 F 399 0.00 1395 reject_low 305 ALIGNMENT 0 Y12-14h15.q1k chr16 730 679 946430 946429 C 52 0.00 1395 reject_low 335 ALIGNMENT 58 Y12-14h15.q1k chr09 217 331 2118 2232 F 115 86.09 1395 reject_low 402 ALIGNMENT 0 Y12-14h15.q1k chr12 560 561 1070007 1076273 C 0 0.00 1395 reject_low 380 ALIGNMENT 336 Y12-14h15.q1k chr13 289 923 1667 2312 F 635 85.35 1395 reject_low 24 ALIGNMENT 94 Y12-14h15.q1k chr16 464 697 1478 1711 F 234 80.77 1395 reject_low 231 ALIGNMENT 0 Y12-14h15.q1k chr05 227 62 575091 575090 C 166 0.00 1395 reject_low 67 ALIGNMENT 0 Y12-14h15.q1k chr10 62 463 1664 1663 F 402 0.00 1395 reject_low 262 ALIGNMENT 416 Y12-14h15.q1k chr12 36 641 7145 7750 F 606 90.43 1395 ambiguous_tel 9 ALIGNMENT 0 Y12-14h15.q1k chr06 442 730 1261 1260 F 289 0.00 1395 reject_low 352 ALIGNMENT 43 Y12-14h15.q1k chr05 295 228 574915 574982 C 68 89.71 1395 reject_low 88 ALIGNMENT 0 Y12-14h15.p1k chr12 90 126 1065772 1065784 F 37 0.00 1372 reject_low 16 ALIGNMENT 0 Y12-14h15.q1k chr05 590 730 2058 2057 F 141 0.00 1395 reject_low 49 ALIGNMENT 142 Y12-14h15.q1k chr09 228 502 1949 2223 F 275 85.82 1395 reject_low 400 ALIGNMENT 0 Y12-14h15.q1k chr09 557 556 2290 2253 F 0 0.00 1395 reject_low 399,400,401,402,403,404 ALIGNMENT 292 Y12-14h15.q1k chr10 217 697 1705 2185 F 481 88.36 1395 reject_low 98 ALIGNMENT 120 Y12-14h15.q1k chr05 533 220 574893 575206 C 314 81.21 1395 reject_low 56 ALIGNMENT 0 Y12-14h15.q1k chr04 215 62 1530238 1530237 C 154 0.00 1395 reject_low 298 ALIGNMENT 304 Y12-14h15.q1k chr08 36 472 1470 1906 F 437 90.85 1395 reject_low 14 ALIGNMENT 0 Y12-14h15.q1k chr13 62 216 1847 1846 F 155 0.00 1395 reject_low 221 ALIGNMENT 0 Y12-14h15.q1k chr15 215 62 1089295 1089294 C 154 0.00 1395 reject_low 362 ALIGNMENT 117 Y12-14h15.q1k chr16 693 464 946270 946499 C 230 84.35 1395 reject_low 198 ALIGNMENT 0 Y12-14h15.q1k chr05 730 462 574894 574893 C 269 0.00 1395 reject_low 59 ALIGNMENT 0 Y12-14h15.q1k chr05 730 534 574894 574893 C 197 0.00 1395 reject_low 56 ALIGNMENT 0 Y12-14h15.q1k chr12 62 360 1683 1682 F 299 0.00 1395 reject_low 145 ALIGNMENT 0 Y12-14h15.q1k chr04 216 62 1530453 1530452 C 155 0.00 1395 reject_low 125 ALIGNMENT 98 Y12-14h15.q1k chr12 472 220 1069627 1069879 C 253 81.82 1395 reject_low 65 ALIGNMENT 0 Y12-14h15.q1k chr12 219 62 1076543 1076542 C 158 0.00 1395 reject_low 384 ALIGNMENT 55 Y12-14h15.q1k chr13 552 678 1678 1804 F 127 81.89 1395 reject_low 314 ALIGNMENT 0 Y12-14h15.q1k chr05 62 587 1481 1480 F 526 0.00 1395 reject_low 84 ALIGNMENT 99 Y12-14h15.q1k chr04 461 217 1530064 1530308 C 245 82.45 1395 reject_low 240 ALIGNMENT 0 Y12-14h15.q1k chr10 694 730 2073 2072 F 37 0.00 1395 reject_low 101 ALIGNMENT 0 Y12-14h15.q1k chr04 219 62 1530378 1530377 C 158 0.00 1395 reject_low 213 ALIGNMENT 41 Y12-14h15.q1k chr15 682 613 1089584 1089653 C 70 87.14 1395 reject_low 342 ALIGNMENT 0 Y12-14h15.q1k chr12 215 62 1069668 1069667 C 154 0.00 1395 reject_low 91 ALIGNMENT 242 Y12-14h15.q1k chr04 697 325 1530116 1530488 C 373 89.54 1395 reject_low 110 ALIGNMENT 0 Y12-14h15.q1k chr08 730 698 560506 560505 C 33 0.00 1395 reject_low 152 ALIGNMENT 56 Y12-14h15.q1k chr09 588 693 1697 1802 F 106 84.91 1395 reject_low 296 ALIGNMENT 228 Y12-14h15.q1k chr09 217 699 1794 2276 F 483 83.85 1395 reject_low 117 ALIGNMENT 0 Y12-14h15.q1k chr09 679 730 1751 1750 F 52 0.00 1395 reject_low 369 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1830 1829 F 155 0.00 1395 reject_low 73 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 2098 2097 F 155 0.00 1395 reject_low 367 ALIGNMENT 0 Y12-14h15.q1k chr08 587 62 560831 560830 C 526 0.00 1395 reject_low 327 ALIGNMENT 41 Y12-14h15.q1k chr13 613 682 1667 1736 F 70 87.14 1395 reject_low 340 ALIGNMENT 0 Y12-14h15.q1k chr05 612 62 575318 575317 C 551 0.00 1395 reject_low 86 ALIGNMENT 0 Y12-14h15.q1k chr06 62 503 892 891 F 442 0.00 1395 reject_low 149 ALIGNMENT 0 Y12-14h15.q1k chr08 539 730 1900 1899 F 192 0.00 1395 reject_low 200 ALIGNMENT 0 Y12-14h15.q1k chr06 62 227 940 939 F 166 0.00 1395 reject_low 232 ALIGNMENT 0 Y12-14h15.q1k chr08 227 62 560507 560506 C 166 0.00 1395 reject_low 365 ALIGNMENT 0 Y12-14h15.q1k chr05 679 730 1679 1678 F 52 0.00 1395 reject_low 60 ALIGNMENT 0 Y12-14h15.q1k chr05 370 730 2054 2053 F 361 0.00 1395 reject_low 92 ALIGNMENT 0 Y12-14h15.q1k chr09 424 730 2288 2287 F 307 0.00 1395 reject_low 285 ALIGNMENT 0 Y12-14h15.q1k chr07 730 698 1089131 1089130 C 33 0.00 1395 reject_low 180 ALIGNMENT 328 Y12-14h15.q1k chr15 869 289 1089063 1089653 C 581 86.57 1395 reject_low 29 ALIGNMENT 0 Y12-14h15.q1k chr12 524 525 1070007 1076273 C 0 0.00 1395 reject_low 385 ALIGNMENT 97 Y12-14h15.q1k chr05 217 517 1758 2058 F 301 79.40 1395 reject_low 66 ALIGNMENT 0 Y12-14h15.q1k chr16 215 62 946028 946027 C 154 0.00 1395 reject_low 364 ALIGNMENT 0 Y12-14h15.q1k chr16 679 730 1656 1655 F 52 0.00 1395 reject_low 277 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 1777 1776 F 155 0.00 1395 reject_low 118 ALIGNMENT 0 Y12-14h15.q1k chr05 62 360 1470 1469 F 299 0.00 1395 reject_low 45 ALIGNMENT 0 Y12-14h15.q1k chr05 216 62 575282 575281 C 155 0.00 1395 reject_low 38 ALIGNMENT 0 Y12-14h15.q1k chr08 62 288 1651 1650 F 227 0.00 1395 reject_low 200 ALIGNMENT 0 Y12-14h15.q1k chr16 324 62 946495 946494 C 263 0.00 1395 reject_low 124 ALIGNMENT 0 Y12-14h15.q1k chr06 62 396 893 892 F 335 0.00 1395 reject_low 201 ALIGNMENT 0 Y12-14h15.q1k chr08 730 694 560582 560581 C 37 0.00 1395 reject_low 188 ALIGNMENT 0 Y12-14h15.q1k chr13 698 730 2039 2038 F 33 0.00 1395 reject_low 104 ALIGNMENT 0 Y12-14h15.q1k chr12 62 551 1694 1693 F 490 0.00 1395 reject_low 278 ALIGNMENT 160 Y12-14h15.q1k chr05 697 361 574981 575317 C 337 83.68 1395 reject_low 46 ALIGNMENT 0 Y12-14h15.q1k chr08 698 730 1807 1806 F 33 0.00 1395 reject_low 265 ALIGNMENT 117 Y12-14h15.q1k chr12 533 220 1069602 1069915 C 314 80.89 1395 reject_low 57 ALIGNMENT 55 Y12-14h15.q1k chr15 678 552 1089516 1089642 C 127 81.89 1395 reject_low 316 ALIGNMENT 0 Y12-14h15.q1k chr02 679 730 2019 2018 F 52 0.00 1395 reject_low 129 ALIGNMENT 0 Y12-14h15.q1k chr04 551 62 1530478 1530477 C 490 0.00 1395 reject_low 311 ALIGNMENT 0 Y12-14h15.q1k chr07 730 462 1088971 1088970 C 269 0.00 1395 reject_low 219 ALIGNMENT 0 Y12-14h15.q1k chr16 62 324 1483 1482 F 263 0.00 1395 reject_low 106 ALIGNMENT 0 Y12-14h15.q1k chr05 406 730 2054 2053 F 325 0.00 1395 reject_low 85 ALIGNMENT 0 Y12-14h15.q1k chr16 426 730 1907 1906 F 305 0.00 1395 reject_low 256 ALIGNMENT 160 Y12-14h15.q1k chr13 361 697 1667 2003 F 337 83.68 1395 reject_low 162 ALIGNMENT 33 Y12-14h15.q1k chr04 281 216 1530064 1530129 C 66 84.85 1395 reject_low 357 ALIGNMENT 0 Y12-14h15.q1k chr07 730 694 1089099 1089098 C 37 0.00 1395 reject_low 193 ALIGNMENT 0 Y12-14h15.q1k chr04 432 62 1530489 1530488 C 371 0.00 1395 reject_low 179 ALIGNMENT 49 Y12-14h15.q1k chr13 588 678 1678 1768 F 91 85.71 1395 reject_low 328 ALIGNMENT 0 Y12-14h15.q1k chr10 62 587 1680 1679 F 526 0.00 1395 reject_low 297 ALIGNMENT 0 Y12-14h15.q1k chr08 730 534 560418 560417 C 197 0.00 1395 reject_low 189 ALIGNMENT 0 Y12-14h15.q1k chr07 730 534 1088971 1088970 C 197 0.00 1395 reject_low 205 ALIGNMENT 0 Y12-14h15.q1k chr12 730 683 1069958 1069957 C 48 0.00 1395 reject_low 387 ALIGNMENT 0 Y12-14h15.q1k chr04 730 296 1530087 1530086 C 435 0.00 1395 reject_low 344 ALIGNMENT 232 Y12-14h15.q1k chr10 217 697 1849 2329 F 481 84.20 1395 reject_low 114 ALIGNMENT 280 Y12-14h15.q1k chr08 397 923 1651 2164 F 527 86.15 1395 reject_low 27 ALIGNMENT 0 Y12-14h15.q1k chr07 730 698 1089059 1089058 C 33 0.00 1395 reject_low 161 ALIGNMENT 0 Y12-14h15.q1k chr14 698 730 1910 1909 F 33 0.00 1395 reject_low 163 ALIGNMENT 0 Y12-14h15.q1k chr12 62 227 2126 2125 F 166 0.00 1395 reject_low 376 ALIGNMENT 72 Y12-14h15.q1k chr13 516 678 1678 1840 F 163 82.21 1395 reject_low 274 ALIGNMENT 311 Y12-14h15.q1k chr08 928 289 560191 560841 C 640 83.91 1395 reject_low 21 ALIGNMENT 0 Y12-14h15.q1k chr06 62 360 893 892 F 299 0.00 1395 reject_low 186 ALIGNMENT 0 Y12-14h15.q1k chr14 296 730 1976 1975 F 435 0.00 1395 reject_low 348 ALIGNMENT 0 Y12-14h15.q1k chr09 62 432 1686 1685 F 371 0.00 1395 reject_low 210 ALIGNMENT 0 Y12-14h15.q1k chr14 698 730 1946 1945 F 33 0.00 1395 reject_low 105 ALIGNMENT 0 Y12-14h15.q1k chr15 215 62 1089403 1089402 C 154 0.00 1395 reject_low 299 ALIGNMENT 49 Y12-14h15.q1k chr08 588 678 1662 1752 F 91 85.71 1395 reject_low 326 ALIGNMENT 0 Y12-14h15.q1k chr15 216 62 1089582 1089581 C 155 0.00 1395 reject_low 159 ALIGNMENT 649 Y12-14h15.p1k chr08 805 59 4037 4782 C 747 97.05 1372 reject_low 14 ALIGNMENT 0 Y12-14h15.q1k chr15 730 694 1089358 1089357 C 37 0.00 1395 reject_low 196 ALIGNMENT 0 Y12-14h15.q1k chr15 730 683 1089585 1089584 C 48 0.00 1395 reject_low 342 ALIGNMENT 0 Y12-14h15.q1k chr02 492 730 2156 2155 F 239 0.00 1395 reject_low 202 ALIGNMENT 0 Y12-14h15.q1k chr15 219 62 1089507 1089506 C 158 0.00 1395 reject_low 244 ALIGNMENT 122 Y12-14h15.q1k chr12 693 397 1076393 1076689 C 297 81.48 1395 reject_low 54 ALIGNMENT 132 Y12-14h15.q1k chr12 697 433 1069762 1070026 C 265 84.15 1395 reject_low 381 ALIGNMENT 64 Y12-14h15.q1k chr14 216 389 1825 1998 F 174 81.03 1395 reject_low 292 ALIGNMENT 399 Y12-14h15.q1k chr05 217 923 1578 2283 F 707 86.42 1395 reject_low 19 ALIGNMENT 23 Y12-14h15.q1k chr09 548 601 2245 2298 F 54 81.48 1395|9,0 reject_low 390,399,400,401,402,403,404 ALIGNMENT 0 Y12-14h15.q1k chr05 62 612 1470 1469 F 551 0.00 1395 reject_low 83 ALIGNMENT 0 Y12-14h15.q1k chr05 730 332 574916 574915 C 399 0.00 1395 reject_low 77 ALIGNMENT 0 Y12-14h15.q1k chr13 62 587 1678 1677 F 526 0.00 1395 reject_low 328 ALIGNMENT 132 Y12-14h15.q1k chr12 433 697 7326 7590 F 265 84.15 1395 reject_low 392 ALIGNMENT 122 Y12-14h15.q1k chr05 693 397 575021 575317 C 297 81.48 1395 reject_low 53 ALIGNMENT 238 Y12-14h15.q1k chr12 605 217 1076265 1076653 C 389 88.69 1395|9,0 reject_low 379 ALIGNMENT 0 Y12-14h15.q1k chr10 62 252 1669 1668 F 191 0.00 1395 reject_low 96 ALIGNMENT 52 Y12-14h15.q1k chr15 331 217 1089251 1089365 C 115 84.35 1395 reject_low 322 ALIGNMENT 0 Y12-14h15.q1k chr09 694 730 1838 1837 F 37 0.00 1395 reject_low 283 ALIGNMENT 0 Y12-14h15.q1k chr07 730 606 1088971 1088970 C 125 0.00 1395 reject_low 119 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1069691 1069690 C 33 0.00 1395 reject_low 382 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 1738 1737 F 155 0.00 1395 reject_low 160 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 1794 1793 F 155 0.00 1395 reject_low 117 ALIGNMENT 0 Y12-14h15.q1k chr09 473 511 2230 2244 F 39 0.00 1395 reject_low 399 ALIGNMENT 56 Y12-14h15.q1k chr08 217 395 1759 1937 F 179 79.33 1395 reject_low 320 ALIGNMENT 185 Y12-14h15.q1k chr16 569 228 945962 946303 C 342 86.26 1395 reject_low 150 ALIGNMENT 0 Y12-14h15.q1k chr12 396 390 1070027 1076264 C 7 0.00 1395 reject_low 386 ALIGNMENT 0 Y12-14h15.q1k chr12 62 252 1683 1682 F 191 0.00 1395 reject_low 131 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1650 1649 F 155 0.00 1395 reject_low 48 ALIGNMENT 241 Y12-14h15.q1k chr12 217 605 7362 7750 F 389 88.95 1395 reject_low 120 ALIGNMENT 0 Y12-14h15.q1k chr12 293 292 2191 7329 F 0 0.00 1395 reject_low 376 ALIGNMENT 226 Y12-14h15.q1k chr16 697 253 946050 946494 C 445 84.94 1395 reject_low 130 ALIGNMENT 0 Y12-14h15.q1k chr05 730 679 575145 575144 C 52 0.00 1395 reject_low 70 ALIGNMENT 150 Y12-14h15.q1k chr10 228 651 1932 2355 F 424 79.95 1395 reject_low 177 ALIGNMENT 0 Y12-14h15.q1k chr12 730 426 1069603 1069602 C 305 0.00 1395 reject_low 68 ALIGNMENT 0 Y12-14h15.q1k chr04 219 62 1530342 1530341 C 158 0.00 1395 reject_low 243 ALIGNMENT 0 Y12-14h15.q1k chr12 730 679 1076589 1076588 C 52 0.00 1395 reject_low 82 ALIGNMENT 0 Y12-14h15.q1k chr05 360 62 575318 575317 C 299 0.00 1395 reject_low 46 ALIGNMENT 292 Y12-14h15.q1k chr09 217 697 1722 2202 F 481 88.36 1395 reject_low 97 ALIGNMENT 0 Y12-14h15.q1k chr02 62 219 1597 1596 F 158 0.00 1395 reject_low 113 ALIGNMENT 336 Y12-14h15.q1k chr14 289 923 1574 2219 F 635 85.35 1395 reject_low 25 ALIGNMENT 0 Y12-14h15.q1k chr09 62 227 2165 2164 F 166 0.00 1395 reject_low 403 ALIGNMENT 0 Y12-14h15.q1k chr12 596 597 1070007 1076273 C 0 0.00 1395 reject_low 379 ALIGNMENT 0 Y12-14h15.q1k chr16 216 62 946387 946386 C 155 0.00 1395 reject_low 134 ALIGNMENT 0 Y12-14h15.q1k chr10 621 730 2360 2359 F 110 0.00 1395 reject_low 165 ALIGNMENT 0 Y12-14h15.q1k chr09 503 511 2224 2244 F 9 0.00 1395 reject_low 400 ALIGNMENT 0 Y12-14h15.q1k chr10 62 360 1669 1668 F 299 0.00 1395 reject_low 168 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 1722 1721 F 155 0.00 1395 reject_low 97 ALIGNMENT 72 Y12-14h15.q1k chr08 678 516 560668 560830 C 163 82.21 1395 reject_low 273 ALIGNMENT 0 Y12-14h15.q1k chr07 219 62 1089248 1089247 C 158 0.00 1395 reject_low 234 ALIGNMENT 0 Y12-14h15.q1k chr13 62 463 1662 1661 F 402 0.00 1395 reject_low 228 ALIGNMENT 0 Y12-14h15.q1k chr16 730 694 946379 946378 C 37 0.00 1395 reject_low 319 ALIGNMENT 0 Y12-14h15.q1k chr06 62 215 1072 1071 F 154 0.00 1395 reject_low 368 ALIGNMENT 0 Y12-14h15.q1k chr16 683 730 1552 1551 F 48 0.00 1395 reject_low 343 ALIGNMENT 0 Y12-14h15.q1k chr02 694 730 2106 2105 F 37 0.00 1395 reject_low 102 ALIGNMENT 43 Y12-14h15.q1k chr09 228 295 2165 2232 F 68 89.71 1395 reject_low 403 ALIGNMENT 0 Y12-14h15.q1k chr08 730 570 560418 560417 C 161 0.00 1395 reject_low 147 ALIGNMENT 0 Y12-14h15.q1k chr06 62 575 892 891 F 514 0.00 1395 reject_low 269 ALIGNMENT 0 Y12-14h15.q1k chr12 332 360 2194 7325 F 29 0.00 1395 reject_low 393 ALIGNMENT 163 Y12-14h15.q1k chr05 361 697 1470 1806 F 337 83.98 1395 reject_low 45 ALIGNMENT 0 Y12-14h15.q1k chr12 296 730 7728 7727 F 435 0.00 1395 reject_low 346 ALIGNMENT 245 Y12-14h15.q1k chr05 697 325 574945 575317 C 373 89.81 1395 reject_low 36 ALIGNMENT 0 Y12-14h15.q1k chr16 551 62 946484 946483 C 490 0.00 1395 reject_low 279 ALIGNMENT 0 Y12-14h15.q1k chr10 62 324 1669 1668 F 263 0.00 1395 reject_low 116 ALIGNMENT 132 Y12-14h15.q1k chr05 697 433 575053 575317 C 265 84.15 1395 reject_low 50 ALIGNMENT 0 Y12-14h15.q1k chr05 396 62 575318 575317 C 335 0.00 1395 reject_low 53 ALIGNMENT 33 Y12-14h15.q1k chr07 281 216 1088970 1089035 C 66 84.85 1395 reject_low 358 ALIGNMENT 0 Y12-14h15.q1k chr08 62 659 1662 1661 F 598 0.00 1395 reject_low 373 ALIGNMENT 122 Y12-14h15.q1k chr06 433 699 893 1159 F 267 82.77 1395 reject_low 187 ALIGNMENT 0 Y12-14h15.q1k chr04 730 698 1530261 1530260 C 33 0.00 1395 reject_low 225 ALIGNMENT 0 Y12-14h15.q1k chr15 730 679 1089517 1089516 C 52 0.00 1395 reject_low 316 ALIGNMENT 114 Y12-14h15.q1k chr02 464 678 1481 1695 F 215 85.12 1395 reject_low 212 ALIGNMENT 0 Y12-14h15.q1k chr05 463 62 575323 575322 C 402 0.00 1395 reject_low 61 ALIGNMENT 0 Y12-14h15.q1k chr16 698 730 1855 1854 F 33 0.00 1395 reject_low 106 ALIGNMENT 0 Y12-14h15.q1k chr05 518 730 2058 2057 F 213 0.00 1395 reject_low 66 ALIGNMENT 0 Y12-14h15.q1k chr12 683 730 7395 7394 F 48 0.00 1395 reject_low 398 ALIGNMENT 0 Y12-14h15.q1k chr12 606 730 7750 7749 F 125 0.00 1395 reject_low 120 ALIGNMENT 55 Y12-14h15.q1k chr12 552 678 7337 7463 F 127 81.89 1395|9,0 reject_low 391 ALIGNMENT 196 Y12-14h15.q1k chr16 697 361 946158 946494 C 337 87.24 1395 reject_low 143 ALIGNMENT 149 Y12-14h15.q1k chr10 397 693 1669 1965 F 297 84.51 1395 reject_low 174 ALIGNMENT 0 Y12-14h15.q1k chr10 679 730 2022 2021 F 52 0.00 1395 reject_low 116 ALIGNMENT 0 Y12-14h15.q1k chr04 730 694 1530193 1530192 C 37 0.00 1395 reject_low 192 ALIGNMENT 0 Y12-14h15.q1k chr16 730 473 945988 945987 C 258 0.00 1395 reject_low 239 ALIGNMENT 20 Y12-14h15.q1k chr16 682 660 946461 946483 C 23 95.65 1395 reject_low 375 ALIGNMENT 0 Y12-14h15.q1k chr14 462 730 1998 1997 F 269 0.00 1395 reject_low 222 ALIGNMENT 41 Y12-14h15.q1k chr12 682 613 1076620 1076689 C 70 87.14 1395 reject_low 87 ALIGNMENT 0 Y12-14h15.q1k chr12 730 694 1069731 1069730 C 37 0.00 1395 reject_low 386 ALIGNMENT 0 Y12-14h15.q1k chr02 384 730 2156 2155 F 347 0.00 1395 reject_low 308 ALIGNMENT 0 Y12-14h15.q1k chr15 730 698 1089390 1089389 C 33 0.00 1395 reject_low 183 ALIGNMENT 0 Y12-14h15.q1k chr12 587 62 1076679 1076678 C 526 0.00 1395 reject_low 82 ALIGNMENT 0 Y12-14h15.q1k chr12 462 463 2216 7320 F 2 0.00 1395 reject_low 394 ALIGNMENT 0 Y12-14h15.q1k chr08 227 62 560471 560470 C 166 0.00 1395 reject_low 372 ALIGNMENT 0 Y12-14h15.q1k chr13 426 730 2091 2090 F 305 0.00 1395 reject_low 254 ALIGNMENT 0 Y12-14h15.q1k chr15 730 296 1089252 1089251 C 435 0.00 1395 reject_low 349 ALIGNMENT 0 Y12-14h15.q1k chr05 730 698 575054 575053 C 33 0.00 1395 reject_low 50 ALIGNMENT 135 Y12-14h15.q1k chr05 397 682 1470 1755 F 286 83.57 1395 reject_low 52 ALIGNMENT 0 Y12-14h15.q1k chr14 62 219 1685 1684 F 158 0.00 1395 reject_low 208 ALIGNMENT 0 Y12-14h15.q1k chr02 312 730 2156 2155 F 419 0.00 1395 reject_low 356 ALIGNMENT 230 Y12-14h15.q1k chr12 325 697 1683 2055 F 373 88.47 1395 reject_low 128 ALIGNMENT 0 Y12-14h15.q1k chr10 700 730 2259 2258 F 31 0.00 1395 reject_low 118 ALIGNMENT 132 Y12-14h15.q1k chr16 433 697 1483 1747 F 265 84.15 1395 reject_low 184 ALIGNMENT 117 Y12-14h15.q1k chr04 533 220 1530064 1530377 C 314 80.89 1395 reject_low 213 ALIGNMENT 72 Y12-14h15.q1k chr16 516 678 1494 1656 F 163 82.21 1395 reject_low 277 ALIGNMENT 0 Y12-14h15.q1k chr16 62 219 1594 1593 F 158 0.00 1395 reject_low 209 ALIGNMENT 0 Y12-14h15.q1k chr15 216 62 1089474 1089473 C 155 0.00 1395 reject_low 241 ALIGNMENT 0 Y12-14h15.q1k chr16 216 62 946459 946458 C 155 0.00 1395 reject_low 31 ALIGNMENT 78 Y12-14h15.q1k chr10 217 507 2065 2355 F 291 77.66 1395 reject_low 268 ALIGNMENT 0 Y12-14h15.q1k chr06 62 612 893 892 F 551 0.00 1395 reject_low 286 ALIGNMENT 444 Y12-14h15.q1k chr10 36 697 1488 2149 F 662 89.88 1395 ambiguous_tel 1 ALIGNMENT 67 Y12-14h15.q1k chr06 576 693 892 1009 F 118 86.44 1395 reject_low 269 ALIGNMENT 0 Y12-14h15.q1k chr12 730 534 1069603 1069602 C 197 0.00 1395 reject_low 57 ALIGNMENT 0 Y12-14h15.q1k chr16 62 612 1483 1482 F 551 0.00 1395 reject_low 343 ALIGNMENT 72 Y12-14h15.q1k chr07 678 516 1089221 1089383 C 163 82.21 1395 reject_low 272 ALIGNMENT 0 Y12-14h15.q1k chr12 62 219 7437 7436 F 158 0.00 1395 reject_low 206 ALIGNMENT 0 Y12-14h15.q1k chr08 730 426 560418 560417 C 305 0.00 1395 reject_low 250 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 2026 2025 F 155 0.00 1395 reject_low 287 ALIGNMENT 348 Y12-14h15.q1k chr02 217 699 1522 2004 F 483 92.13 1395 reject_low 94 ALIGNMENT 0 Y12-14h15.q1k chr05 730 282 574894 574893 C 449 0.00 1395 reject_low 90 ALIGNMENT 102 Y12-14h15.q1k chr16 461 217 945962 946206 C 245 82.86 1395 reject_low 224 ALIGNMENT 49 Y12-14h15.q1k chr16 588 678 1494 1584 F 91 85.71 1395 reject_low 331 ALIGNMENT 0 Y12-14h15.q1k chr13 62 612 1667 1666 F 551 0.00 1395 reject_low 340 ALIGNMENT 90 Y12-14h15.q1k chr12 228 425 2018 2215 F 198 83.84 1395 reject_low 392 ALIGNMENT 0 Y12-14h15.q1k chr09 62 587 1697 1696 F 526 0.00 1395 reject_low 296 ALIGNMENT 0 Y12-14h15.q1k chr02 62 227 2073 2072 F 166 0.00 1395 reject_low 356 ALIGNMENT 72 Y12-14h15.q1k chr12 678 516 1069853 1070015 C 163 82.21 1395|0,9 reject_low 385 ALIGNMENT 0 Y12-14h15.q1k chr12 694 730 1799 1798 F 37 0.00 1395 reject_low 318 ALIGNMENT 191 Y12-14h15.q1k chr02 212 597 1769 2154 F 386 84.72 1395 reject_low 141 ALIGNMENT 43 Y12-14h15.q1k chr05 613 678 1470 1535 F 66 89.39 1395 reject_low 83 ALIGNMENT 666 Y12-14h15.p1k chr07 49 805 1084962 1085713 F 757 97.36 1372 ambiguous_tel 4 ALIGNMENT 0 Y12-14h15.q1k chr06 62 647 892 891 F 586 0.00 1395 reject_low 333 ALIGNMENT 0 Y12-14h15.q1k chr13 62 432 1667 1666 F 371 0.00 1395 reject_low 181 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 1974 1973 F 155 0.00 1395 reject_low 399 ALIGNMENT 0 Y12-14h15.q1k chr09 694 730 2090 2089 F 37 0.00 1395 reject_low 100 ALIGNMENT 0 Y12-14h15.q1k chr12 62 227 7553 7552 F 166 0.00 1395 reject_low 253 ALIGNMENT 132 Y12-14h15.q1k chr04 697 433 1530224 1530488 C 265 84.15 1395 reject_low 179 ALIGNMENT 63 Y12-14h15.q1k chr08 389 217 560417 560589 C 173 80.92 1395 reject_low 295 ALIGNMENT 334 Y12-14h15.q1k chr16 289 869 1483 2073 F 581 86.92 1395 reject_low 28 ALIGNMENT 0 Y12-14h15.q1k chr12 360 62 1076690 1076689 C 299 0.00 1395 reject_low 47 ALIGNMENT 0 Y12-14h15.q1k chr06 62 480 905 904 F 419 0.00 1395 reject_low 170 ALIGNMENT 31 Y12-14h15.q1k chr08 281 228 560417 560470 C 54 87.04 1395 reject_low 372 ALIGNMENT 0 Y12-14h15.q1k chr12 432 62 1076690 1076689 C 371 0.00 1395 reject_low 51 ALIGNMENT 0 Y12-14h15.q1k chr16 252 62 946495 946494 C 191 0.00 1395 reject_low 130 ALIGNMENT 0 Y12-14h15.q1k chr16 730 698 946051 946050 C 33 0.00 1395 reject_low 130 ALIGNMENT 0 Y12-14h15.q1k chr12 62 396 1683 1682 F 335 0.00 1395 reject_low 178 ALIGNMENT 0 Y12-14h15.q1k chr05 698 730 1806 1805 F 33 0.00 1395 reject_low 45 ALIGNMENT 209 Y12-14h15.q1k chr02 325 697 1486 1858 F 373 86.60 1395 reject_low 138 ALIGNMENT 157 Y12-14h15.q1k chr12 697 361 1076353 1076689 C 337 83.38 1395 reject_low 47 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1076462 1076461 C 33 0.00 1395 reject_low 62 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1069847 1069846 C 155 0.00 1395 reject_low 64 ALIGNMENT 0 Y12-14h15.q1k chr12 515 62 1076679 1076678 C 454 0.00 1395 reject_low 71 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 1813 1812 F 155 0.00 1395 reject_low 109 ALIGNMENT 0 Y12-14h15.q1k chr15 219 62 1089543 1089542 C 158 0.00 1395 reject_low 214 ALIGNMENT 55 Y12-14h15.q1k chr07 331 217 1088992 1089106 C 115 85.22 1395 reject_low 302 ALIGNMENT 41 Y12-14h15.q1k chr05 682 613 575248 575317 C 70 87.14 1395 reject_low 86 ALIGNMENT 0 Y12-14h15.q1k chr09 62 324 1686 1685 F 263 0.00 1395 reject_low 115 ALIGNMENT 326 Y12-14h15.q1k chr10 253 693 1669 2109 F 441 92.74 1395 reject_low 96 ALIGNMENT 0 Y12-14h15.q1k chr15 587 62 1089643 1089642 C 526 0.00 1395 reject_low 330 ALIGNMENT 0 Y12-14h15.q1k chr07 288 62 1089395 1089394 C 227 0.00 1395 reject_low 30 ALIGNMENT 362 Y12-14h15.q1k chr16 818 217 945846 946458 C 602 87.87 1395 reject_low 31 ALIGNMENT 160 Y12-14h15.q1k chr16 361 697 1483 1819 F 337 83.68 1395 reject_low 164 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1722 1721 F 155 0.00 1395 reject_low 55 ALIGNMENT 32 Y12-14h15.q1k chr08 216 271 1866 1921 F 56 87.50 1395 reject_low 366 ALIGNMENT 0 Y12-14h15.q1k chr15 730 698 1089282 1089281 C 33 0.00 1395 reject_low 111 ALIGNMENT 0 Y12-14h15.q1k chr02 456 730 2156 2155 F 275 0.00 1395 reject_low 218 ALIGNMENT 104 Y12-14h15.q1k chr08 516 701 1662 1847 F 186 86.02 1395 reject_low 190 ALIGNMENT 0 Y12-14h15.q1k chr07 360 62 1089395 1089394 C 299 0.00 1395 reject_low 161 ALIGNMENT 209 Y12-14h15.q1k chr05 217 661 1614 2058 F 445 83.82 1395 reject_low 40 ALIGNMENT 0 Y12-14h15.q1k chr05 700 730 1952 1951 F 31 0.00 1395 reject_low 17 ALIGNMENT 41 Y12-14h15.q1k chr12 682 613 1069957 1070026 C 70 87.14 1395 reject_low 387 ALIGNMENT 0 Y12-14h15.q1k chr08 219 62 560695 560694 C 158 0.00 1395 reject_low 217 ALIGNMENT 0 Y12-14h15.q1k chr12 730 473 1069628 1069627 C 258 0.00 1395 reject_low 65 ALIGNMENT 0 Y12-14h15.q1k chr07 730 282 1088971 1088970 C 449 0.00 1395 reject_low 358 ALIGNMENT 0 Y12-14h15.q1k chr13 62 396 1667 1666 F 335 0.00 1395 reject_low 194 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1076402 1076401 C 155 0.00 1395 reject_low 378,382 ALIGNMENT 510 Y12-14h15.q1k chr16 697 36 946014 946675 C 662 93.20 1395 ambiguous_tel 2 ALIGNMENT 43 Y12-14h15.q1k chr12 295 228 1076287 1076354 C 68 89.71 1395|3,0 reject_low 377 ALIGNMENT 114 Y12-14h15.q1k chr08 461 217 560417 560661 C 245 84.49 1395 reject_low 216 ALIGNMENT 196 Y12-14h15.q1k chr09 212 538 1897 2223 F 327 88.38 1395 reject_low 390 ALIGNMENT 56 Y12-14h15.q1k chr10 588 693 1680 1785 F 106 84.91 1395 reject_low 297 ALIGNMENT 0 Y12-14h15.q1k chr07 216 62 1089323 1089322 C 155 0.00 1395 reject_low 153 ALIGNMENT 0 Y12-14h15.q1k chr08 730 679 560741 560740 C 52 0.00 1395 reject_low 327 ALIGNMENT 0 Y12-14h15.q1k chr12 396 62 1076690 1076689 C 335 0.00 1395 reject_low 54 ALIGNMENT 649 Y12-14h15.p1k chr12 59 805 1072263 1073008 F 747 97.05 1372 ambiguous_tel 12 ALIGNMENT 49 Y12-14h15.q1k chr04 678 588 1530387 1530477 C 91 85.71 1395 reject_low 324 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 7662 7661 F 33 0.00 1395 reject_low 393 ALIGNMENT 101 Y12-14h15.q1k chr14 220 472 1721 1973 F 253 82.21 1395 reject_low 237 ALIGNMENT 117 Y12-14h15.q1k chr15 533 220 1089229 1089542 C 314 80.89 1395 reject_low 214 ALIGNMENT 0 Y12-14h15.q1k chr16 730 698 946303 946302 C 33 0.00 1395 reject_low 259 ALIGNMENT 0 Y12-14h15.q1k chr12 473 730 7725 7724 F 258 0.00 1395 reject_low 235 ALIGNMENT 72 Y12-14h15.q1k chr14 516 678 1585 1747 F 163 82.21 1395 reject_low 275 ALIGNMENT 0 Y12-14h15.q1k chr08 62 216 1687 1686 F 155 0.00 1395 reject_low 245 ALIGNMENT 0 Y12-14h15.q1k chr02 700 730 1932 1931 F 31 0.00 1395 reject_low 132 ALIGNMENT 0 Y12-14h15.q1k chr12 227 62 1069800 1069799 C 166 0.00 1395 reject_low 68 ALIGNMENT 326 Y12-14h15.q1k chr09 253 693 1686 2126 F 441 92.74 1395 reject_low 95 ALIGNMENT 102 Y12-14h15.q1k chr12 217 461 7506 7750 F 245 82.86 1395 reject_low 220 ALIGNMENT 26 Y12-14h15.q1k chr09 512 565 2245 2298 F 54 83.33 1395|0,9 reject_low 399,400,401,402,403,404 ALIGNMENT 0 Y12-14h15.q1k chr13 683 730 1736 1735 F 48 0.00 1395 reject_low 340 ALIGNMENT 0 Y12-14h15.q1k chr12 62 219 1938 1937 F 158 0.00 1395 reject_low 395 ALIGNMENT 37 Y12-14h15.q1k chr08 295 228 560439 560506 C 68 86.76 1395 reject_low 365 ALIGNMENT 0 Y12-14h15.q1k chr05 62 252 1470 1469 F 191 0.00 1395 reject_low 35 ALIGNMENT 0 Y12-14h15.q1k chr08 730 462 560418 560417 C 269 0.00 1395 reject_low 216 ALIGNMENT 0 Y12-14h15.q1k chr06 590 730 1265 1264 F 141 0.00 1395 reject_low 15 ALIGNMENT 0 Y12-14h15.q1k chr02 62 215 1881 1880 F 154 0.00 1395 reject_low 202 ALIGNMENT 0 Y12-14h15.q1k chr07 730 679 1089258 1089257 C 52 0.00 1395 reject_low 312 ALIGNMENT 0 Y12-14h15.q1k chr15 288 62 1089654 1089653 C 227 0.00 1395 reject_low 29 ALIGNMENT 0 Y12-14h15.q1k chr05 730 679 575217 575216 C 52 0.00 1395 reject_low 81 ALIGNMENT 0 Y12-14h15.q1k chr09 620 730 2232 2231 F 111 0.00 1395 reject_low 127 ALIGNMENT 109 Y12-14h15.q1k chr09 228 463 2021 2256 F 236 84.32 1395 reject_low 401 ALIGNMENT 157 Y12-14h15.q1k chr09 361 697 1686 2022 F 337 83.38 1395 reject_low 167 ALIGNMENT 47 Y12-14h15.q1k chr05 228 405 1877 2054 F 178 77.53 1395 reject_low 85 ALIGNMENT 0 Y12-14h15.q1k chr05 62 551 1481 1480 F 490 0.00 1395 reject_low 69 ALIGNMENT 0 Y12-14h15.q1k chr08 730 473 560443 560442 C 258 0.00 1395 reject_low 217 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1758 1757 F 155 0.00 1395 reject_low 66 ALIGNMENT 99 Y12-14h15.q1k chr12 461 217 1076265 1076509 C 245 82.45 1395 reject_low 383 ALIGNMENT 0 Y12-14h15.q1k chr04 730 642 1530065 1530064 C 89 0.00 1395 ambiguous_tel 11 ALIGNMENT 61 Y12-14h15.q1k chr12 389 216 1076265 1076438 C 174 80.46 1395 reject_low 386 ALIGNMENT 0 Y12-14h15.q1k chr15 730 534 1089230 1089229 C 197 0.00 1395 reject_low 214 ALIGNMENT 55 Y12-14h15.q1k chr12 678 552 1069889 1070015 C 127 81.89 1395|0,9 reject_low 380 ALIGNMENT 0 Y12-14h15.q1k chr14 698 730 1838 1837 F 33 0.00 1395 reject_low 182 ALIGNMENT 72 Y12-14h15.q1k chr04 678 516 1530315 1530477 C 163 82.21 1395 reject_low 271 ALIGNMENT 49 Y12-14h15.q1k chr08 613 693 1651 1731 F 81 87.65 1395 reject_low 309 ALIGNMENT 0 Y12-14h15.q1k chr15 396 62 1089654 1089653 C 335 0.00 1395 reject_low 196 ALIGNMENT 0 Y12-14h15.q1k chr10 62 211 1880 1879 F 150 0.00 1395 reject_low 112 ALIGNMENT 111 Y12-14h15.q1k chr09 433 697 1686 1950 F 265 81.51 1395 reject_low 210 ALIGNMENT 0 Y12-14h15.q1k chr12 551 62 1076679 1076678 C 490 0.00 1395 reject_low 79 ALIGNMENT 132 Y12-14h15.q1k chr15 697 433 1089389 1089653 C 265 84.15 1395 reject_low 183 ALIGNMENT 0 Y12-14h15.q1k chr08 463 730 1932 1931 F 268 0.00 1395 reject_low 245 ALIGNMENT 0 Y12-14h15.q1k chr13 282 730 2091 2090 F 449 0.00 1395 reject_low 360 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 1918 1917 F 155 0.00 1395 reject_low 218 ALIGNMENT 0 Y12-14h15.q1k chr05 62 396 1470 1469 F 335 0.00 1395 reject_low 52 ALIGNMENT 132 Y12-14h15.q1k chr12 697 433 1076425 1076689 C 265 84.15 1395 reject_low 51 ALIGNMENT 75 Y12-14h15.q1k chr06 289 661 893 1265 F 373 74.80 1395 reject_low 280 ALIGNMENT 120 Y12-14h15.q1k chr16 220 533 1594 1907 F 314 81.21 1395 reject_low 209 ALIGNMENT 0 Y12-14h15.q1k chr07 730 679 1089294 1089293 C 52 0.00 1395 reject_low 325 ALIGNMENT 84 Y12-14h15.q1k chr10 464 678 1664 1878 F 215 80.47 1395 reject_low 262 ALIGNMENT 0 Y12-14h15.q1k chr16 62 227 1710 1709 F 166 0.00 1395 reject_low 256 ALIGNMENT 0 Y12-14h15.q1k chr16 62 396 1483 1482 F 335 0.00 1395 reject_low 197 ALIGNMENT 0 Y12-14h15.q1k chr09 62 211 1897 1896 F 150 0.00 1395 reject_low 390 ALIGNMENT 291 Y12-14h15.q1k chr05 217 699 1506 1988 F 483 88.20 1395 reject_low 33 ALIGNMENT 0 Y12-14h15.q1k chr05 62 463 1465 1464 F 402 0.00 1395 reject_low 60 ALIGNMENT 32 Y12-14h15.p1k chr05 49 89 570926 570968 F 41 95.12 1372 reject_low 18,20,36,38,43,46,50,53,56,59,61,63,67,70,74,77,78,81,86,88,90 ALIGNMENT 132 Y12-14h15.q1k chr08 533 220 560417 560730 C 314 82.48 1395 reject_low 189 ALIGNMENT 0 Y12-14h15.q1k chr08 360 62 560842 560841 C 299 0.00 1395 reject_low 152 ALIGNMENT 0 Y12-14h15.q1k chr08 62 551 1662 1661 F 490 0.00 1395 reject_low 265 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1076354 1076353 C 33 0.00 1395 reject_low 47 ALIGNMENT 33 Y12-14h15.q1k chr12 281 216 1076265 1076330 C 66 84.85 1395 reject_low 387 ALIGNMENT 0 Y12-14h15.q1k chr15 360 62 1089654 1089653 C 299 0.00 1395 reject_low 169 ALIGNMENT 0 Y12-14h15.q1k chr04 730 698 1530225 1530224 C 33 0.00 1395 reject_low 179 ALIGNMENT 0 Y12-14h15.q1k chr06 62 227 976 975 F 166 0.00 1395 reject_low 288 ALIGNMENT 0 Y12-14h15.q1k chr07 463 62 1089400 1089399 C 402 0.00 1395 reject_low 226 ALIGNMENT 0 Y12-14h15.q1k chr13 62 227 1894 1893 F 166 0.00 1395 reject_low 254 ALIGNMENT 0 Y12-14h15.q1k chr15 551 62 1089643 1089642 C 490 0.00 1395 reject_low 316 ALIGNMENT 0 Y12-14h15.q1k chr08 730 282 560418 560417 C 449 0.00 1395 reject_low 372 ALIGNMENT 221 Y12-14h15.q1k chr10 212 692 1880 2360 F 481 83.37 1395 reject_low 112 ALIGNMENT 73 Y12-14h15.q1k chr05 552 678 1481 1607 F 127 86.61 1395 reject_low 69 ALIGNMENT 0 Y12-14h15.q1k chr12 597 596 2207 7345 F 0 0.00 1395 reject_low 389 ALIGNMENT 0 Y12-14h15.q1k chr08 694 730 1731 1730 F 37 0.00 1395 reject_low 309 ALIGNMENT 0 Y12-14h15.q1k chr14 62 227 1801 1800 F 166 0.00 1395 reject_low 255 ALIGNMENT 0 Y12-14h15.q1k chr02 698 730 1822 1821 F 33 0.00 1395 reject_low 151 ALIGNMENT 0 Y12-14h15.q1k chr13 698 730 2003 2002 F 33 0.00 1395 reject_low 162 ALIGNMENT 0 Y12-14h15.q1k chr15 730 698 1089318 1089317 C 33 0.00 1395 reject_low 169 ALIGNMENT 416 Y12-14h15.q1k chr14 36 641 1393 1998 F 606 90.43 1395 ambiguous_tel 5 ALIGNMENT 99 Y12-14h15.q1k chr05 464 678 1465 1679 F 215 82.79 1395 reject_low 60 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1076510 1076509 C 155 0.00 1395 reject_low 383 ALIGNMENT 0 Y12-14h15.q1k chr06 62 252 893 892 F 191 0.00 1395 reject_low 246 ALIGNMENT 41 Y12-14h15.q1k chr12 613 682 7326 7395 F 70 87.14 1395 reject_low 398 ALIGNMENT 0 Y12-14h15.q1k chr08 219 62 560731 560730 C 158 0.00 1395 reject_low 189 ALIGNMENT 0 Y12-14h15.q1k chr10 679 730 1842 1841 F 52 0.00 1395 reject_low 282 ALIGNMENT 0 Y12-14h15.q1k chr04 730 426 1530065 1530064 C 305 0.00 1395 reject_low 263 ALIGNMENT 0 Y12-14h15.q1k chr12 561 560 2207 7345 F 0 0.00 1395 reject_low 391 ALIGNMENT 233 Y12-14h15.q1k chr16 697 325 946122 946494 C 373 88.74 1395 reject_low 124 ALIGNMENT 0 Y12-14h15.q1k chr13 570 730 2091 2090 F 161 0.00 1395 reject_low 155 ALIGNMENT 193 Y12-14h15.q1k chr02 228 697 1677 2146 F 470 81.70 1395 reject_low 144 ALIGNMENT 0 Y12-14h15.q1k chr05 216 62 575030 575029 C 155 0.00 1395 reject_low 77 ALIGNMENT 0 Y12-14h15.q1k chr16 396 62 946495 946494 C 335 0.00 1395 reject_low 176 ALIGNMENT 0 Y12-14h15.q1k chr08 612 62 560842 560841 C 551 0.00 1395 reject_low 339 ALIGNMENT 50 Y12-14h15.q1k chr12 588 693 1694 1799 F 106 83.02 1395 reject_low 318 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 2029 2028 F 155 0.00 1395 reject_low 204 ALIGNMENT 0 Y12-14h15.q1k chr05 683 730 1503 1502 F 48 0.00 1395 reject_low 93 ALIGNMENT 0 Y12-14h15.q1k chr13 296 730 2069 2068 F 435 0.00 1395 reject_low 347 ALIGNMENT 0 Y12-14h15.q1k chr15 730 606 1089230 1089229 C 125 0.00 1395 reject_low 126 ALIGNMENT 0 Y12-14h15.q1k chr05 554 730 2058 2057 F 177 0.00 1395 reject_low 55 ALIGNMENT 0 Y12-14h15.q1k chr12 642 730 2215 2214 F 89 0.00 1395 reject_low 136 ALIGNMENT 64 Y12-14h15.q1k chr06 217 462 1001 1246 F 246 77.64 1395 reject_low 300 ALIGNMENT 0 Y12-14h15.q1k chr05 227 62 574983 574982 C 166 0.00 1395 reject_low 88 ALIGNMENT 120 Y12-14h15.q1k chr13 220 533 1778 2091 F 314 81.21 1395 reject_low 207 ALIGNMENT 0 Y12-14h15.q1k chr10 62 396 1669 1668 F 335 0.00 1395 reject_low 174 ALIGNMENT 0 Y12-14h15.q1k chr13 642 730 2091 2090 F 89 0.00 1395 ambiguous_tel 10 ALIGNMENT 0 Y12-14h15.q1k chr15 324 62 1089654 1089653 C 263 0.00 1395 reject_low 111 ALIGNMENT 82 Y12-14h15.q1k chr06 540 697 892 1049 F 158 84.81 1395 reject_low 248 ALIGNMENT 31 Y12-14h15.q1k chr09 613 678 1686 1751 F 66 83.33 1395 reject_low 369 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1076654 1076653 C 155 0.00 1395 reject_low 379 ALIGNMENT 0 Y12-14h15.q1k chr02 62 252 1486 1485 F 191 0.00 1395 reject_low 132 ALIGNMENT 94 Y12-14h15.q1k chr15 697 464 1089425 1089658 C 234 80.77 1395 reject_low 230 ALIGNMENT 0 Y12-14h15.q1k chr02 62 463 1481 1480 F 402 0.00 1395 reject_low 212 ALIGNMENT 0 Y12-14h15.q1k chr08 683 730 1684 1683 F 48 0.00 1395 reject_low 373 ALIGNMENT 265 Y12-14h15.q1k chr08 605 217 560417 560805 C 389 91.00 1395 reject_low 99 ALIGNMENT 99 Y12-14h15.q1k chr12 461 217 1069602 1069846 C 245 82.45 1395 reject_low 64 ALIGNMENT 0 Y12-14h15.q1k chr13 473 730 2066 2065 F 258 0.00 1395 reject_low 236 ALIGNMENT 90 Y12-14h15.q1k chr14 228 425 1801 1998 F 198 83.84 1395 reject_low 255 ALIGNMENT 0 Y12-14h15.q1k chr16 227 62 946160 946159 C 166 0.00 1395 reject_low 257 ALIGNMENT 120 Y12-14h15.q1k chr07 533 220 1088970 1089283 C 314 81.21 1395 reject_low 205 ALIGNMENT 0 Y12-14h15.q1k chr16 216 62 946099 946098 C 155 0.00 1395 reject_low 307 ALIGNMENT 0 Y12-14h15.q1k chr08 62 463 1646 1645 F 402 0.00 1395 reject_low 215 ALIGNMENT 142 Y12-14h15.q1k chr05 217 589 1686 2058 F 373 80.97 1395 reject_low 49 ALIGNMENT 98 Y12-14h15.q1k chr08 678 397 560560 560841 C 282 79.43 1395 reject_low 242 ALIGNMENT 0 Y12-14h15.q1k chr10 405 730 2360 2359 F 326 0.00 1395 reject_low 371 ALIGNMENT 0 Y12-14h15.q1k chr14 534 730 1998 1997 F 197 0.00 1395 reject_low 208 ALIGNMENT 218 Y12-14h15.q1k chr02 253 699 1486 1932 F 447 84.34 1395 reject_low 132 ALIGNMENT 0 Y12-14h15.q1k chr04 360 62 1530489 1530488 C 299 0.00 1395 reject_low 166 ALIGNMENT 0 Y12-14h15.q1k chr05 730 679 575181 575180 C 52 0.00 1395 reject_low 78 ALIGNMENT 0 Y12-14h15.q1k chr14 62 612 1574 1573 F 551 0.00 1395 reject_low 341 ALIGNMENT 55 Y12-14h15.q1k chr02 552 678 1497 1623 F 127 81.89 1395 reject_low 310 ALIGNMENT 0 Y12-14h15.q1k chr16 219 62 946240 946239 C 158 0.00 1395 reject_low 239 ALIGNMENT 102 Y12-14h15.q1k chr12 217 461 1971 2215 F 245 82.86 1395 reject_low 394 ALIGNMENT 0 Y12-14h15.q1k chr02 62 551 1497 1496 F 490 0.00 1395 reject_low 310 ALIGNMENT 507 Y12-14h15.q1k chr12 36 697 1502 2163 F 662 93.05 1395 ambiguous_tel 3 ALIGNMENT 330 Y12-14h15.q1k chr04 923 289 1529843 1530488 C 635 85.04 1395 reject_low 26 ALIGNMENT 0 Y12-14h15.q1k chr12 324 62 1076690 1076689 C 263 0.00 1395 reject_low 37 ALIGNMENT 0 Y12-14h15.q1k chr10 698 730 2329 2328 F 33 0.00 1395 reject_low 114 ALIGNMENT 43 Y12-14h15.q1k chr05 588 678 1481 1571 F 91 83.52 1395 reject_low 84 ALIGNMENT 0 Y12-14h15.q1k chr02 679 730 1623 1622 F 52 0.00 1395 reject_low 310 ALIGNMENT 0 Y12-14h15.p1k chr05 126 90 5882 5894 C 37 0.00 1372 reject_low 17 ALIGNMENT 538 Y12-14h15.p1k chr05 127 843 570982 571668 F 717 94.42 1372 reject_low 18 ALIGNMENT 0 Y12-14h15.q1k chr13 62 360 1667 1666 F 299 0.00 1395 reject_low 162 ALIGNMENT 0 Y12-14h15.q1k chr12 462 730 7750 7749 F 269 0.00 1395 reject_low 220 ALIGNMENT 72 Y12-14h15.q1k chr12 516 678 7337 7499 F 163 82.21 1395|9,0 reject_low 396 ALIGNMENT 0 Y12-14h15.q1k chr16 534 730 1907 1906 F 197 0.00 1395 reject_low 209 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1069655 1069654 C 33 0.00 1395 reject_low 378 ALIGNMENT 173 Y12-14h15.q1k chr12 217 569 7398 7750 F 353 84.70 1395 reject_low 154 ALIGNMENT 34 Y12-14h15.q1k chr02 217 275 2098 2156 F 59 88.14 1395 reject_low 367 ALIGNMENT 0 Y12-14h15.q1k chr16 730 698 946015 946014 C 33 0.00 1395 ambiguous_tel 2 ALIGNMENT 0 Y12-14h15.q1k chr09 272 511 2245 2244 F 240 0.00 1395 reject_low 404 ALIGNMENT 209 Y12-14h15.q1k chr16 693 289 946090 946494 C 405 85.19 1395 reject_low 140 ALIGNMENT 33 Y12-14h15.q1k chr05 281 216 574893 574958 C 66 84.85 1395 reject_low 90 ALIGNMENT 0 Y12-14h15.q1k chr08 473 730 1906 1905 F 258 0.00 1395 reject_low 14 ALIGNMENT 0 Y12-14h15.q1k chr02 62 211 1769 1768 F 150 0.00 1395 reject_low 141 ALIGNMENT 246 Y12-14h15.q1k chr02 217 693 1630 2106 F 477 85.32 1395 reject_low 102 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1069739 1069738 C 155 0.00 1395 reject_low 80 ALIGNMENT 0 Y12-14h15.q1k chr16 698 730 1819 1818 F 33 0.00 1395 reject_low 164 ALIGNMENT 241 Y12-14h15.q1k chr16 217 605 1519 1907 F 389 88.95 1395 reject_low 123 ALIGNMENT 41 Y12-14h15.q1k chr16 613 682 1483 1552 F 70 87.14 1395 reject_low 343 ALIGNMENT 167 Y12-14h15.q1k chr02 217 635 1738 2156 F 419 81.62 1395 reject_low 160 ALIGNMENT 43 Y12-14h15.q1k chr12 228 295 2126 2193 F 68 89.71 1395|0,3 reject_low 376 ALIGNMENT 0 Y12-14h15.q1k chr16 679 730 1620 1619 F 52 0.00 1395 reject_low 317 ALIGNMENT 0 Y12-14h15.q1k chr09 698 730 2202 2201 F 33 0.00 1395 reject_low 97 ALIGNMENT 242 Y12-14h15.q1k chr15 697 325 1089281 1089653 C 373 89.54 1395 reject_low 111 ALIGNMENT 0 Y12-14h15.q1k chr16 62 216 1555 1554 F 155 0.00 1395 reject_low 157 ALIGNMENT 49 Y12-14h15.q1k chr08 331 217 560439 560553 C 115 83.48 1395 reject_low 332 ALIGNMENT 0 Y12-14h15.q1k chr04 288 62 1530489 1530488 C 227 0.00 1395 reject_low 26 ALIGNMENT 0 Y12-14h15.q1k chr12 62 659 1694 1693 F 598 0.00 1395 reject_low 374 ALIGNMENT 172 Y12-14h15.q1k chr02 361 697 1486 1822 F 337 84.87 1395 reject_low 151 ALIGNMENT 142 Y12-14h15.q1k chr06 481 699 905 1123 F 219 89.04 1395 reject_low 170 ALIGNMENT 0 Y12-14h15.q1k chr08 216 62 560590 560589 C 155 0.00 1395 reject_low 295 ALIGNMENT 94 Y12-14h15.q1k chr14 464 697 1569 1802 F 234 80.77 1395 reject_low 229 ALIGNMENT 55 Y12-14h15.q1k chr07 678 552 1089257 1089383 C 127 81.89 1395 reject_low 312 ALIGNMENT 0 Y12-14h15.q1k chr12 730 332 1069625 1069624 C 399 0.00 1395 reject_low 80 ALIGNMENT 233 Y12-14h15.q1k chr02 220 697 1597 2074 F 478 84.31 1395 reject_low 113 ALIGNMENT 56 Y12-14h15.q1k chr06 613 697 893 977 F 85 89.41 1395 reject_low 286 ALIGNMENT 129 Y12-14h15.q1k chr08 289 538 1651 1900 F 250 85.60 1395 reject_low 200 ALIGNMENT 125 Y12-14h15.q1k chr16 533 217 945962 946278 C 317 81.70 1395 reject_low 199 ALIGNMENT 0 Y12-14h15.q1k chr07 396 62 1089395 1089394 C 335 0.00 1395 reject_low 193 ALIGNMENT 120 Y12-14h15.q1k chr12 220 533 7437 7750 F 314 81.21 1395 reject_low 206 ALIGNMENT 0 Y12-14h15.q1k chr05 622 730 2054 2053 F 109 0.00 1395 reject_low 48 ALIGNMENT 197 Y12-14h15.q1k chr08 569 217 560417 560769 C 353 86.97 1395 reject_low 147 ALIGNMENT 0 Y12-14h15.q1k chr12 730 698 1076426 1076425 C 33 0.00 1395 reject_low 51 ALIGNMENT 0 Y12-14h15.q1k chr06 62 432 893 892 F 371 0.00 1395 reject_low 187 ALIGNMENT 0 Y12-14h15.q1k chr04 587 62 1530478 1530477 C 526 0.00 1395 reject_low 324 ALIGNMENT 39 Y12-14h15.q1k chr02 228 311 2073 2156 F 84 84.52 1395 reject_low 356 ALIGNMENT 0 Y12-14h15.q1k chr08 62 227 1842 1841 F 166 0.00 1395 reject_low 355 ALIGNMENT 0 Y12-14h15.q1k chr13 62 216 1739 1738 F 155 0.00 1395 reject_low 155 ALIGNMENT 0 Y12-14h15.q1k chr16 730 679 946214 946213 C 52 0.00 1395 reject_low 176 ALIGNMENT 0 Y12-14h15.q1k chr16 227 62 946052 946051 C 166 0.00 1395 reject_low 351 ALIGNMENT 33 Y12-14h15.q1k chr10 216 404 2172 2360 F 189 74.60 1395 reject_low 371 ALIGNMENT 0 Y12-14h15.q1k chr07 730 426 1088971 1088970 C 305 0.00 1395 reject_low 252 ALIGNMENT 0 Y12-14h15.q1k chr05 730 296 574916 574915 C 435 0.00 1395 reject_low 88 ALIGNMENT 171 Y12-14h15.q1k chr05 289 697 1470 1878 F 409 81.91 1395 reject_low 42 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 7506 7505 F 155 0.00 1395 reject_low 220 ALIGNMENT 0 Y12-14h15.q1k chr04 216 62 1530309 1530308 C 155 0.00 1395 reject_low 240 ALIGNMENT 0 Y12-14h15.q1k chr09 62 252 1686 1685 F 191 0.00 1395 reject_low 95 ALIGNMENT 244 Y12-14h15.q1k chr09 325 678 1686 2039 F 354 90.96 1395 reject_low 115 ALIGNMENT 206 Y12-14h15.q1k chr08 361 619 1651 1909 F 259 94.59 1395 reject_low 146 ALIGNMENT 0 Y12-14h15.q1k chr12 62 227 1874 1873 F 166 0.00 1395 reject_low 391 ALIGNMENT 64 Y12-14h15.q1k chr13 216 389 1918 2091 F 174 81.03 1395 reject_low 291 ALIGNMENT 0 Y12-14h15.q1k chr02 62 215 1953 1952 F 154 0.00 1395 reject_low 247 ALIGNMENT 0 Y12-14h15.q1k chr02 598 730 2154 2153 F 133 0.00 1395 reject_low 141 ALIGNMENT 98 Y12-14h15.q1k chr15 472 220 1089254 1089506 C 253 81.82 1395 reject_low 244 ALIGNMENT 157 Y12-14h15.q1k chr15 697 361 1089317 1089653 C 337 83.38 1395 reject_low 169 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 7398 7397 F 155 0.00 1395 reject_low 154 ALIGNMENT 0 Y12-14h15.q1k chr15 730 473 1089255 1089254 C 258 0.00 1395 reject_low 244 ALIGNMENT 41 Y12-14h15.q1k chr08 682 613 560772 560841 C 70 87.14 1395 reject_low 339 ALIGNMENT 0 Y12-14h15.q1k chr02 62 515 1497 1496 F 454 0.00 1395 reject_low 251 ALIGNMENT 69 Y12-14h15.q1k chr10 516 678 1680 1842 F 163 81.60 1395 reject_low 282 ALIGNMENT 0 Y12-14h15.q1k chr13 606 730 2091 2090 F 125 0.00 1395 reject_low 121 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1578 1577 F 155 0.00 1395 reject_low 19 ALIGNMENT 0 Y12-14h15.q1k chr15 216 62 1089618 1089617 C 155 0.00 1395 reject_low 126 ALIGNMENT 0 Y12-14h15.q1k chr08 702 730 1847 1846 F 29 0.00 1395 reject_low 190 ALIGNMENT 0 Y12-14h15.q1k chr16 730 426 945963 945962 C 305 0.00 1395 reject_low 257 ALIGNMENT 0 Y12-14h15.q1k chr02 276 730 2156 2155 F 455 0.00 1395 reject_low 367 ALIGNMENT 70 Y12-14h15.q1k chr12 552 678 1694 1820 F 127 85.83 1395 reject_low 278 ALIGNMENT 245 Y12-14h15.q1k chr14 325 697 1574 1946 F 373 89.81 1395 reject_low 105 ALIGNMENT 0 Y12-14h15.q1k chr04 730 390 1530065 1530064 C 341 0.00 1395 reject_low 298 ALIGNMENT 0 Y12-14h15.q1k chr16 62 587 1494 1493 F 526 0.00 1395 reject_low 331 ALIGNMENT 43 Y12-14h15.q1k chr08 228 331 1806 1909 F 104 82.69 1395 reject_low 354 ALIGNMENT 0 Y12-14h15.q1k chr12 62 227 2018 2017 F 166 0.00 1395 reject_low 392 ALIGNMENT 0 Y12-14h15.q1k chr02 62 219 1705 1704 F 158 0.00 1395 reject_low 139 ALIGNMENT 0 Y12-14h15.q1k chr04 730 282 1530065 1530064 C 449 0.00 1395 reject_low 357 ALIGNMENT 0 Y12-14h15.q1k chr13 332 730 2069 2068 F 399 0.00 1395 reject_low 304 ALIGNMENT 0 Y12-14h15.q1k chr04 396 62 1530489 1530488 C 335 0.00 1395 reject_low 192 ALIGNMENT 0 Y12-14h15.q1k chr13 62 551 1678 1677 F 490 0.00 1395 reject_low 314 ALIGNMENT 0 Y12-14h15.q1k chr15 730 462 1089230 1089229 C 269 0.00 1395 reject_low 241 ALIGNMENT 132 Y12-14h15.q1k chr14 433 697 1574 1838 F 265 84.15 1395 reject_low 182 ALIGNMENT 0 Y12-14h15.q1k chr08 551 62 560831 560830 C 490 0.00 1395 reject_low 313 ALIGNMENT 0 Y12-14h15.q1k chr13 62 219 1778 1777 F 158 0.00 1395 reject_low 207 ALIGNMENT 0 Y12-14h15.q1k chr02 62 216 1990 1989 F 155 0.00 1395 reject_low 308 ALIGNMENT 0 Y12-14h15.q1k chr09 62 463 1681 1680 F 402 0.00 1395 reject_low 261 ALIGNMENT 0 Y12-14h15.q1k chr09 62 360 1686 1685 F 299 0.00 1395 reject_low 167 ALIGNMENT 157 Y12-14h15.q1k chr10 361 697 1669 2005 F 337 83.38 1395 reject_low 168 ALIGNMENT 0 Y12-14h15.q1k chr16 216 62 946279 946278 C 155 0.00 1395 reject_low 199 ALIGNMENT 0 Y12-14h15.q1k chr16 62 219 1630 1629 F 158 0.00 1395 reject_low 238 ALIGNMENT 0 Y12-14h15.q1k chr05 730 698 575090 575089 C 33 0.00 1395 reject_low 61 ALIGNMENT 0 Y12-14h15.q1k chr06 518 730 1265 1264 F 213 0.00 1395 reject_low 288 ALIGNMENT 122 Y12-14h15.q1k chr14 397 693 1574 1870 F 297 81.48 1395 reject_low 195 ALIGNMENT 0 Y12-14h15.q1k chr05 730 642 574894 574893 C 89 0.00 1395 reject_low 18 ALIGNMENT 0 Y12-14h15.q1k chr07 215 62 1089144 1089143 C 154 0.00 1395 reject_low 289 ALIGNMENT 459 Y12-14h15.q1k chr02 36 697 1305 1966 F 662 90.63 1395 ambiguous_tel 7 ALIGNMENT 33 Y12-14h15.q1k chr12 216 281 7685 7750 F 66 84.85 1395 reject_low 359 ALIGNMENT 0 Y12-14h15.q1k chr10 62 227 2148 2147 F 166 0.00 1395 reject_low 353 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1076618 1076617 C 155 0.00 1395 reject_low 380 ALIGNMENT 666 Y12-14h15.p1k chr14 805 49 5255 6006 C 757 97.36 1372 ambiguous_tel 5 ALIGNMENT 32 Y12-14h15.p1k chr05 89 49 5895 5937 C 41 95.12 1372 reject_low 17,19,33,34,35,40,41,42,45,48,49,52,55,58,60,66,69,72,73,75,83,84,85,92,93 ALIGNMENT 0 Y12-14h15.q1k chr06 662 730 1265 1264 F 69 0.00 1395 reject_low 280 ALIGNMENT 0 Y12-14h15.q1k chr04 463 62 1530494 1530493 C 402 0.00 1395 reject_low 225 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 1827 1826 F 155 0.00 1395 reject_low 389 ALIGNMENT 0 Y12-14h15.q1k chr16 730 683 946462 946461 C 48 0.00 1395 reject_low 375 ALIGNMENT 180 Y12-14h15.q1k chr02 289 697 1486 1894 F 409 82.64 1395 reject_low 148 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 1820 1819 F 52 0.00 1395 reject_low 278 ALIGNMENT 236 Y12-14h15.q1k chr09 217 619 1830 2232 F 403 87.84 1395 reject_low 127 ALIGNMENT 87 Y12-14h15.q1k chr15 425 228 1089229 1089426 C 198 83.33 1395 reject_low 264 ALIGNMENT 101 Y12-14h15.q1k chr16 472 220 945987 946239 C 253 82.21 1395 reject_low 239 ALIGNMENT 0 Y12-14h15.q1k chr09 694 730 1802 1801 F 37 0.00 1395 reject_low 296 ALIGNMENT 0 Y12-14h15.q1k chr13 62 215 2026 2025 F 154 0.00 1395 reject_low 360 ALIGNMENT 0 Y12-14h15.q1k chr12 62 215 7685 7684 F 154 0.00 1395 reject_low 359 ALIGNMENT 0 Y12-14h15.q1k chr02 62 612 1486 1485 F 551 0.00 1395 reject_low 336 ALIGNMENT 0 Y12-14h15.q1k chr04 730 679 1530388 1530387 C 52 0.00 1395 reject_low 324 ALIGNMENT 0 Y12-14h15.q1k chr14 62 216 1862 1861 F 155 0.00 1395 reject_low 305 ALIGNMENT 160 Y12-14h15.q1k chr12 361 697 7326 7662 F 337 83.68 1395 reject_low 393 ALIGNMENT 50 Y12-14h15.q1k chr16 693 588 946378 946483 C 106 83.02 1395 reject_low 319 ALIGNMENT 0 Y12-14h15.q1k chr13 62 219 1814 1813 F 158 0.00 1395 reject_low 236 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 2019 2018 F 33 0.00 1395 reject_low 145 ALIGNMENT 43 Y12-14h15.q1k chr04 295 228 1530086 1530153 C 68 89.71 1395 reject_low 344 ALIGNMENT 33 Y12-14h15.q1k chr13 216 281 2026 2091 F 66 84.85 1395 reject_low 360 ALIGNMENT 72 Y12-14h15.q1k chr15 678 516 1089480 1089642 C 163 82.21 1395 reject_low 276 ALIGNMENT 0 Y12-14h15.q1k chr04 216 62 1530417 1530416 C 155 0.00 1395 reject_low 158 ALIGNMENT 90 Y12-14h15.q1k chr05 425 228 574893 575090 C 198 83.84 1395 reject_low 67 ALIGNMENT 0 Y12-14h15.q1k chr06 700 730 1159 1158 F 31 0.00 1395 reject_low 187 ALIGNMENT 416 Y12-14h15.q1k chr16 36 641 1302 1907 F 606 90.43 1395 ambiguous_tel 6 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 2127 2126 F 33 0.00 1395 reject_low 131 ALIGNMENT 52 Y12-14h15.q1k chr04 331 217 1530086 1530200 C 115 84.35 1395 reject_low 321 ALIGNMENT 0 Y12-14h15.q1k chr08 62 227 1806 1805 F 166 0.00 1395 reject_low 354 ALIGNMENT 0 Y12-14h15.q1k chr08 730 679 560669 560668 C 52 0.00 1395 reject_low 273 ALIGNMENT 0 Y12-14h15.q1k chr09 332 511 2233 2244 F 180 0.00 1395 reject_low 402 ALIGNMENT 102 Y12-14h15.q1k chr14 217 461 1754 1998 F 245 82.86 1395 reject_low 222 ALIGNMENT 238 Y12-14h15.q1k chr04 605 217 1530064 1530452 C 389 88.69 1395 reject_low 125 ALIGNMENT 0 Y12-14h15.q1k chr12 730 694 1076394 1076393 C 37 0.00 1395 reject_low 54 ALIGNMENT 0 Y12-14h15.q1k chr08 515 62 560831 560830 C 454 0.00 1395 reject_low 273 ALIGNMENT 122 Y12-14h15.q1k chr15 693 397 1089357 1089653 C 297 81.48 1395 reject_low 196 ALIGNMENT 0 Y12-14h15.q1k chr05 216 62 575138 575137 C 155 0.00 1395 reject_low 59 ALIGNMENT 0 Y12-14h15.q1k chr16 730 694 946091 946090 C 37 0.00 1395 reject_low 140 ALIGNMENT 0 Y12-14h15.q1k chr14 679 730 1747 1746 F 52 0.00 1395 reject_low 275 ALIGNMENT 0 Y12-14h15.q1k chr12 525 524 2207 7345 F 0 0.00 1395 reject_low 396 ALIGNMENT 0 Y12-14h15.q1k chr16 62 215 1842 1841 F 154 0.00 1395 reject_low 363 ALIGNMENT 94 Y12-14h15.q1k chr12 697 464 1069798 1070031 C 234 80.77 1395|0,5 reject_low 383,384 ALIGNMENT 0 Y12-14h15.q1k chr14 62 215 1825 1824 F 154 0.00 1395 reject_low 292 ALIGNMENT 241 Y12-14h15.q1k chr14 217 605 1610 1998 F 389 88.95 1395 reject_low 122 ALIGNMENT 0 Y12-14h15.q1k chr02 679 730 1695 1694 F 52 0.00 1395 reject_low 212 ALIGNMENT 0 Y12-14h15.q1k chr04 730 683 1530420 1530419 C 48 0.00 1395 reject_low 337 ALIGNMENT 310 Y12-14h15.q1k chr12 834 289 1069471 1070026 C 546 86.81 1395|0,4 reject_low 377 ALIGNMENT 173 Y12-14h15.q1k chr14 217 569 1646 1998 F 353 84.70 1395 reject_low 156 ALIGNMENT 79 Y12-14h15.q1k chr12 516 697 1694 1875 F 182 81.87 1395 reject_low 258 ALIGNMENT 416 Y12-14h15.q1k chr05 641 36 574893 575498 C 606 90.43 1395 reject_low 18 ALIGNMENT 41 Y12-14h15.q1k chr07 682 613 1089325 1089394 C 70 87.14 1395 reject_low 338 ALIGNMENT 0 Y12-14h15.q1k chr02 679 730 1767 1766 F 52 0.00 1395 reject_low 185 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 1741 1740 F 155 0.00 1395 reject_low 108 ALIGNMENT 0 Y12-14h15.q1k chr10 700 730 2223 2222 F 31 0.00 1395 reject_low 108 ALIGNMENT 33 Y12-14h15.q1k chr14 216 281 1933 1998 F 66 84.85 1395 reject_low 361 ALIGNMENT 0 Y12-14h15.q1k chr02 636 730 2156 2155 F 95 0.00 1395 reject_low 160 ALIGNMENT 339 Y12-14h15.q1k chr12 289 923 7326 7971 F 635 85.51 1395|4,0 reject_low 376 ALIGNMENT 238 Y12-14h15.q1k chr12 605 217 1069602 1069990 C 389 88.69 1395 reject_low 39 ALIGNMENT 64 Y12-14h15.q1k chr12 216 389 7577 7750 F 174 81.03 1395 reject_low 290 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1506 1505 F 155 0.00 1395 reject_low 33 ALIGNMENT 0 Y12-14h15.q1k chr04 324 62 1530489 1530488 C 263 0.00 1395 reject_low 110 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 7698 7697 F 33 0.00 1395 reject_low 388 ALIGNMENT 212 Y12-14h15.q1k chr02 220 671 1705 2156 F 452 83.85 1395 reject_low 139 ALIGNMENT 55 Y12-14h15.q1k chr16 331 217 945984 946098 C 115 85.22 1395 reject_low 307 ALIGNMENT 0 Y12-14h15.q1k chr12 679 730 7463 7462 F 52 0.00 1395 reject_low 391 ALIGNMENT 0 Y12-14h15.q1k chr13 679 730 1768 1767 F 52 0.00 1395 reject_low 328 ALIGNMENT 0 Y12-14h15.q1k chr12 62 215 2042 2041 F 154 0.00 1395 reject_low 397 ALIGNMENT 74 Y12-14h15.q1k chr08 552 697 1662 1807 F 146 84.25 1395 reject_low 265 ALIGNMENT 0 Y12-14h15.q1k chr09 575 730 2223 2222 F 156 0.00 1395 reject_low 137 ALIGNMENT 0 Y12-14h15.q1k chr16 62 515 1494 1493 F 454 0.00 1395 reject_low 277 ALIGNMENT 0 Y12-14h15.q1k chr16 62 288 1483 1482 F 227 0.00 1395 reject_low 28 ALIGNMENT 692 Y12-14h15.p1k chr10 843 49 5595 6378 C 795 97.48 1372 ambiguous_tel 1 ALIGNMENT 219 Y12-14h15.q1k chr12 217 641 1791 2215 F 425 85.41 1395 reject_low 136 ALIGNMENT 69 Y12-14h15.q1k chr09 516 678 1697 1859 F 163 81.60 1395 reject_low 281 ALIGNMENT 0 Y12-14h15.q1k chr12 730 390 1069603 1069602 C 341 0.00 1395 reject_low 76 ALIGNMENT 0 Y12-14h15.q1k chr10 544 730 2355 2354 F 187 0.00 1395 reject_low 204 ALIGNMENT 33 Y12-14h15.q1k chr16 281 216 945962 946027 C 66 84.85 1395 reject_low 364 ALIGNMENT 614 Y12-14h15.p1k chr12 127 843 1065785 1066488 F 717 97.07 1372 reject_low 16 ALIGNMENT 0 Y12-14h15.q1k chr14 62 463 1569 1568 F 402 0.00 1395 reject_low 229 ALIGNMENT 0 Y12-14h15.q1k chr06 554 730 1265 1264 F 177 0.00 1395 reject_low 232 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 2118 2117 F 155 0.00 1395 reject_low 402 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 1957 1956 F 155 0.00 1395 reject_low 165 ALIGNMENT 84 Y12-14h15.q1k chr02 516 687 1497 1668 F 172 83.72 1395 reject_low 251 ALIGNMENT 0 Y12-14h15.q1k chr05 551 62 575307 575306 C 490 0.00 1395 reject_low 78 ALIGNMENT 0 Y12-14h15.q1k chr12 730 679 1069926 1069925 C 52 0.00 1395 reject_low 379 ALIGNMENT 76 Y12-14h15.q1k chr08 217 426 1723 1932 F 210 80.95 1395 reject_low 270 ALIGNMENT 102 Y12-14h15.q1k chr07 461 217 1088970 1089214 C 245 82.86 1395 reject_low 219 ALIGNMENT 0 Y12-14h15.q1k chr05 679 730 1607 1606 F 52 0.00 1395 reject_low 69 ALIGNMENT 0 Y12-14h15.q1k chr10 694 730 1965 1964 F 37 0.00 1395 reject_low 174 ALIGNMENT 70 Y12-14h15.q1k chr09 217 423 2082 2288 F 207 80.19 1395 reject_low 285 ALIGNMENT 0 Y12-14h15.q1k chr16 606 730 1907 1906 F 125 0.00 1395 reject_low 123 ALIGNMENT 0 Y12-14h15.q1k chr13 62 227 2002 2001 F 166 0.00 1395 reject_low 347 ALIGNMENT 0 Y12-14h15.q1k chr14 62 216 1754 1753 F 155 0.00 1395 reject_low 222 ALIGNMENT 228 Y12-14h15.q1k chr10 217 699 1777 2259 F 483 83.85 1395 reject_low 118 ALIGNMENT 0 Y12-14h15.q1k chr12 62 216 1719 1718 F 155 0.00 1395 reject_low 22 ALIGNMENT 0 Y12-14h15.q1k chr16 730 698 946159 946158 C 33 0.00 1395 reject_low 143 ALIGNMENT 122 Y12-14h15.q1k chr16 397 693 1483 1779 F 297 81.48 1395 reject_low 197 ALIGNMENT 120 Y12-14h15.q1k chr14 220 533 1685 1998 F 314 81.21 1395 reject_low 208 ALIGNMENT 0 Y12-14h15.q1k chr02 62 360 1486 1485 F 299 0.00 1395 reject_low 151 ALIGNMENT 0 Y12-14h15.q1k chr06 694 730 1009 1008 F 37 0.00 1395 reject_low 269 ALIGNMENT 87 Y12-14h15.q1k chr12 425 228 1069602 1069799 C 198 83.33 1395 reject_low 68 ALIGNMENT 63 Y12-14h15.q1k chr05 516 678 1481 1643 F 163 80.37 1395 reject_low 75 ALIGNMENT 61 Y12-14h15.q1k chr04 389 216 1530064 1530237 C 174 80.46 1395 reject_low 298 ALIGNMENT 137 Y12-14h15.q1k chr02 397 678 1486 1767 F 282 84.04 1395 reject_low 185 ALIGNMENT 0 Y12-14h15.q1k chr07 730 473 1088996 1088995 C 258 0.00 1395 reject_low 234 ALIGNMENT 170 Y12-14h15.q1k chr04 569 217 1530064 1530416 C 353 84.42 1395 reject_low 158 ALIGNMENT 0 Y12-14h15.q1k chr10 508 730 2355 2354 F 223 0.00 1395 reject_low 268 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1069955 1069954 C 155 0.00 1395 reject_low 44 ALIGNMENT 0 Y12-14h15.q1k chr09 700 730 2240 2239 F 31 0.00 1395 reject_low 107 ALIGNMENT 0 Y12-14h15.q1k chr12 328 329 1070023 1076289 C 0 0.00 1395 reject_low 378 ALIGNMENT 231 Y12-14h15.q1k chr02 217 678 1558 2019 F 462 84.85 1395 reject_low 129 ALIGNMENT 0 Y12-14h15.q1k chr09 62 215 2189 2188 F 154 0.00 1395 reject_low 404 ALIGNMENT 0 Y12-14h15.q1k chr05 215 62 574959 574958 C 154 0.00 1395 reject_low 90 ALIGNMENT 0 Y12-14h15.q1k chr12 219 62 1069880 1069879 C 158 0.00 1395 reject_low 65 ALIGNMENT 0 Y12-14h15.q1k chr08 62 324 1651 1650 F 263 0.00 1395 reject_low 171 ALIGNMENT 0 Y12-14h15.q1k chr16 730 282 945963 945962 C 449 0.00 1395 reject_low 364 ALIGNMENT 0 Y12-14h15.q1k chr14 606 730 1998 1997 F 125 0.00 1395 reject_low 122 ALIGNMENT 0 Y12-14h15.q1k chr08 396 62 560842 560841 C 335 0.00 1395 reject_low 242 ALIGNMENT 0 Y12-14h15.q1k chr12 730 606 1069603 1069602 C 125 0.00 1395 reject_low 39 ALIGNMENT 0 Y12-14h15.q1k chr05 683 730 1755 1754 F 48 0.00 1395 reject_low 52 ALIGNMENT 0 Y12-14h15.q1k chr14 62 227 1909 1908 F 166 0.00 1395 reject_low 348 ALIGNMENT 547 Y12-14h15.p1k chr05 843 127 5195 5881 C 717 94.84 1372 reject_low 17 ALIGNMENT 416 Y12-14h15.q1k chr13 36 641 1486 2091 F 606 90.43 1395 ambiguous_tel 10 ALIGNMENT 0 Y12-14h15.q1k chr16 360 62 946495 946494 C 299 0.00 1395 reject_low 143 ALIGNMENT 0 Y12-14h15.q1k chr02 672 730 2156 2155 F 59 0.00 1395 reject_low 139 ALIGNMENT 0 Y12-14h15.q1k chr16 62 463 1478 1477 F 402 0.00 1395 reject_low 231 ALIGNMENT 0 Y12-14h15.q1k chr07 730 296 1088993 1088992 C 435 0.00 1395 reject_low 345 ALIGNMENT 0 Y12-14h15.q1k chr12 62 587 1694 1693 F 526 0.00 1395 reject_low 318 ALIGNMENT 0 Y12-14h15.q1k chr08 396 730 1937 1936 F 335 0.00 1395 reject_low 320 ALIGNMENT 20 Y12-14h15.q1k chr05 660 682 1481 1503 F 23 95.65 1395 reject_low 93 ALIGNMENT 0 Y12-14h15.q1k chr16 288 62 946495 946494 C 227 0.00 1395 reject_low 140 ALIGNMENT 0 Y12-14h15.q1k chr14 282 730 1998 1997 F 449 0.00 1395 reject_low 361 ALIGNMENT 0 Y12-14h15.q1k chr16 730 332 945985 945984 C 399 0.00 1395 reject_low 307 ALIGNMENT 0 Y12-14h15.q1k chr15 227 62 1089319 1089318 C 166 0.00 1395 reject_low 349 ALIGNMENT 0 Y12-14h15.q1k chr12 730 679 1076517 1076516 C 52 0.00 1395 reject_low 71 ALIGNMENT 0 Y12-14h15.q1k chr09 602 730 2298 2297 F 129 0.00 1395 reject_low 390,399,400,401,402,403,404 ALIGNMENT 99 Y12-14h15.q1k chr06 253 621 893 1261 F 369 77.24 1395 reject_low 246 ALIGNMENT 0 Y12-14h15.q1k chr02 62 587 1497 1496 F 526 0.00 1395 reject_low 323 ALIGNMENT 670 Y12-14h15.p1k chr16 49 805 943120 943872 F 757 97.49 1372 ambiguous_tel 2 ALIGNMENT 0 Y12-14h15.q1k chr09 694 730 2126 2125 F 37 0.00 1395 reject_low 95 ALIGNMENT 0 Y12-14h15.q1k chr16 515 62 946484 946483 C 454 0.00 1395 reject_low 259 ALIGNMENT 641 Y12-14h15.p1k chr08 49 805 557570 558325 F 757 96.43 1372 ambiguous_tel 8 ALIGNMENT 0 Y12-14h15.q1k chr05 216 62 575246 575245 C 155 0.00 1395 reject_low 43 ALIGNMENT 93 Y12-14h15.q1k chr08 425 228 560417 560614 C 198 84.34 1395 reject_low 250 ALIGNMENT 0 Y12-14h15.q1k chr14 683 730 1643 1642 F 48 0.00 1395 reject_low 341 ALIGNMENT 245 Y12-14h15.q1k chr16 325 697 1483 1855 F 373 89.81 1395 reject_low 106 ALIGNMENT 0 Y12-14h15.q1k chr04 216 62 1530201 1530200 C 155 0.00 1395 reject_low 321 ALIGNMENT 0 Y12-14h15.q1k chr16 730 679 946250 946249 C 52 0.00 1395 reject_low 260 ALIGNMENT 0 Y12-14h15.q1k chr07 216 62 1089359 1089358 C 155 0.00 1395 reject_low 119 ALIGNMENT 148 Y12-14h15.q1k chr05 217 621 1650 2054 F 405 80.49 1395 reject_low 48 ALIGNMENT 0 Y12-14h15.q1k chr12 698 730 2055 2054 F 33 0.00 1395 reject_low 128 ALIGNMENT 0 Y12-14h15.q1k chr13 62 288 1667 1666 F 227 0.00 1395 reject_low 24 ALIGNMENT 241 Y12-14h15.q1k chr07 605 217 1088970 1089358 C 389 88.95 1395 reject_low 119 ALIGNMENT 165 Y12-14h15.q1k chr10 217 620 1957 2360 F 404 81.93 1395 reject_low 165 ALIGNMENT 0 Y12-14h15.q1k chr06 62 216 1001 1000 F 155 0.00 1395 reject_low 300 ALIGNMENT 64 Y12-14h15.q1k chr12 216 389 2042 2215 F 174 81.03 1395 reject_low 397 ALIGNMENT 0 Y12-14h15.q1k chr10 62 612 1669 1668 F 551 0.00 1395 reject_low 370 ALIGNMENT 0 Y12-14h15.q1k chr16 730 570 945963 945962 C 161 0.00 1395 reject_low 150 ALIGNMENT 0 Y12-14h15.q1k chr13 62 216 1703 1702 F 155 0.00 1395 reject_low 121 ALIGNMENT 0 Y12-14h15.q1k chr12 216 62 1069991 1069990 C 155 0.00 1395 reject_low 39 ALIGNMENT 0 Y12-14h15.q1k chr13 62 324 1667 1666 F 263 0.00 1395 reject_low 104 ALIGNMENT 271 Y12-14h15.q1k chr05 253 697 1470 1914 F 445 88.31 1395 reject_low 35 ALIGNMENT 98 Y12-14h15.q1k chr12 472 220 1076290 1076542 C 253 81.82 1395|4,0 reject_low 384 ALIGNMENT 121 Y12-14h15.q1k chr05 217 553 1722 2058 F 337 80.42 1395 reject_low 55 ALIGNMENT 0 Y12-14h15.q1k chr08 62 252 1651 1650 F 191 0.00 1395 reject_low 249 ALIGNMENT 413 Y12-14h15.q1k chr15 641 36 1089229 1089834 C 606 90.26 1395 ambiguous_tel 13 ALIGNMENT 0 Y12-14h15.q1k chr10 441 730 2360 2359 F 290 0.00 1395 reject_low 353 ALIGNMENT 0 Y12-14h15.q1k chr04 730 698 1530153 1530152 C 33 0.00 1395 reject_low 166 ALIGNMENT 101 Y12-14h15.q1k chr12 220 472 1938 2190 F 253 82.21 1395|0,4 reject_low 395 ALIGNMENT 241 Y12-14h15.q1k chr05 605 217 574893 575281 C 389 88.95 1395 reject_low 38 ALIGNMENT 0 Y12-14h15.q1k chr06 62 539 892 891 F 478 0.00 1395 reject_low 248 ALIGNMENT 0 Y12-14h15.q1k chr09 679 730 1859 1858 F 52 0.00 1395 reject_low 281 ALIGNMENT 0 Y12-14h15.q1k chr08 679 730 1752 1751 F 52 0.00 1395 reject_low 326 ALIGNMENT 222 Y12-14h15.q1k chr16 641 217 945962 946386 C 425 85.65 1395 reject_low 134 ALIGNMENT 282 Y12-14h15.q1k chr06 36 589 712 1265 F 554 84.48 1395 reject_low 15 ALIGNMENT 215 Y12-14h15.q1k chr08 697 325 560469 560841 C 373 87.13 1395 reject_low 135 ALIGNMENT 0 Y12-14h15.q1k chr05 463 730 2039 2038 F 268 0.00 1395 reject_low 72 ALIGNMENT 649 Y12-14h15.p1k chr12 805 59 4305 5050 C 747 97.05 1372 ambiguous_tel 3 ALIGNMENT 0 Y12-14h15.q1k chr07 515 62 1089384 1089383 C 454 0.00 1395 reject_low 272 ALIGNMENT 0 Y12-14h15.q1k chr09 62 216 1830 1829 F 155 0.00 1395 reject_low 127 ALIGNMENT 0 Y12-14h15.q1k chr02 679 730 1731 1730 F 52 0.00 1395 reject_low 267 ALIGNMENT 34 Y12-14h15.q1k chr06 216 405 1072 1261 F 190 74.74 1395 reject_low 368 ALIGNMENT 0 Y12-14h15.q1k chr14 473 730 1973 1972 F 258 0.00 1395 reject_low 237 ALIGNMENT 0 Y12-14h15.q1k chr12 215 62 1076439 1076438 C 154 0.00 1395 reject_low 386 ALIGNMENT 0 Y12-14h15.q1k chr09 62 227 1949 1948 F 166 0.00 1395 reject_low 400 ALIGNMENT 0 Y12-14h15.q1k chr12 282 730 7750 7749 F 449 0.00 1395 reject_low 359 ALIGNMENT 0 Y12-14h15.q1k chr12 227 62 1076463 1076462 C 166 0.00 1395 reject_low 381 ALIGNMENT 0 Y12-14h15.q1k chr14 570 730 1998 1997 F 161 0.00 1395 reject_low 156 ALIGNMENT 0 Y12-14h15.q1k chr14 679 730 1711 1710 F 52 0.00 1395 reject_low 315 ALIGNMENT 46 Y12-14h15.q1k chr10 228 440 2148 2360 F 213 76.06 1395 reject_low 353 ALIGNMENT 0 Y12-14h15.q1k chr05 700 730 1988 1987 F 31 0.00 1395 reject_low 33 ALIGNMENT 0 Y12-14h15.q1k chr14 694 730 1870 1869 F 37 0.00 1395 reject_low 195 ALIGNMENT 0 Y12-14h15.q1k chr12 62 215 7577 7576 F 154 0.00 1395 reject_low 290 ALIGNMENT 0 Y12-14h15.q1k chr05 62 216 1614 1613 F 155 0.00 1395 reject_low 40 ALIGNMENT 0 Y12-14h15.q1k chr16 612 62 946495 946494 C 551 0.00 1395 reject_low 335 ALIGNMENT 0 Y12-14h15.q1k chr16 730 534 945963 945962 C 197 0.00 1395 reject_low 199 ALIGNMENT 0 Y12-14h15.q1k chr10 62 216 2065 2064 F 155 0.00 1395 reject_low 268 ALIGNMENT 0 Y12-14h15.q1k chr10 62 515 1680 1679 F 454 0.00 1395 reject_low 282 ALIGNMENT 0 Y12-14h15.q1k chr13 62 216 1955 1954 F 155 0.00 1395 reject_low 304 ALIGNMENT 0 Y12-14h15.q1k chr08 62 216 1723 1722 F 155 0.00 1395 reject_low 270 ALIGNMENT 0 Y12-14h15.q1k chr07 587 62 1089384 1089383 C 526 0.00 1395 reject_low 325 ALIGNMENT 79 Y12-14h15.q1k chr16 697 516 946302 946483 C 182 81.87 1395 reject_low 259 ALIGNMENT 241 Y12-14h15.q1k chr13 217 605 1703 2091 F 389 88.95 1395 reject_low 121 ALIGNMENT 245 Y12-14h15.q1k chr12 325 697 7326 7698 F 373 89.81 1395|4,0 reject_low 388 ALIGNMENT 0 Y12-14h15.q1k chr12 612 62 1076690 1076689 C 551 0.00 1395 reject_low 87 ALIGNMENT 0 Y12-14h15.q1k chr12 62 288 1683 1682 F 227 0.00 1395 reject_low 142 ALIGNMENT 720 Y12-14h16.q1k chr12 869 34 757708 758540 C 836 96.53 1633 accept 0 ALIGNMENT 1018 Y12-14h16.p1k chr12 20 1190 752605 753780 F 1171 96.75 1202 accept 0 ALIGNMENT 664 Y12-14h17.p1k chr15 55 846 474936 475716 F 792 97.35 1321 accept 0 ALIGNMENT 627 Y12-14h17.q1k chr15 819 33 479030 479792 C 787 95.43 1436 accept 0 ALIGNMENT 936 Y12-14h20.p1k chr16 1079 7 864776 865838 C 1073 97.02 1156 accept 0 ALIGNMENT 1036 Y12-14h20.q1k chr16 40 1250 861217 862443 F 1211 96.20 1440 accept 0 ALIGNMENT 873 Y12-14h23.p1k chr02 12 977 233528 234489 F 966 97.93 1039 accept 0 ALIGNMENT 920 Y12-14h23.q1k chr02 1151 39 236795 237928 C 1113 95.96 1308 accept 0 ALIGNMENT 277 Y12-14h24.p1k chr15 528 93 112544 112975 C 436 88.99 1172 accept 0 ALIGNMENT 0 Y12-14i01.p1k chr07 748 794 307205 307265 F 47 0.00 1279 reject_bad_break 0 ALIGNMENT 645 Y12-14i01.p1k chr07 56 747 306514 307204 F 692 98.41 1279 reject_bad_break 0 ALIGNMENT 32 Y12-14i01.p1k chr07 795 894 307266 307353 F 100 86.00 1279 reject_bad_break 0 ALIGNMENT 692 Y12-14i01.q1k chr07 885 36 310050 310891 C 850 95.76 1487 reject_bad_break 0 ALIGNMENT 723 Y12-14i03.p1k chr04 63 907 1276386 1277219 F 845 96.92 1297 accept 0 ALIGNMENT 1021 Y12-14i03.q1k chr04 1184 36 1280281 1281429 C 1149 97.04 1423 accept 0 ALIGNMENT 748 Y12-14i04.p1k chr12 897 1 50557 51440 C 897 95.99 1058 accept 0 ALIGNMENT 831 Y12-14i04.q1k chr12 35 1124 46341 47426 F 1090 94.77 1421 accept 0 ALIGNMENT 837 Y12-14i06.p1k chr04 951 5 972235 973171 C 947 97.47 1109 accept 0 ALIGNMENT 885 Y12-14i06.q1k chr04 27 1001 966988 967966 F 975 98.46 1401 accept 0 ALIGNMENT 580 Y12-14i07.p1k chr04 841 63 1171597 1172368 C 779 93.45 1258 accept 0 ALIGNMENT 912 Y12-14i07.q1k chr04 28 1107 1167504 1168607 F 1080 96.11 1383 accept 0 ALIGNMENT 699 Y12-14i08.q1k chr09 34 817 10914 11693 F 784 97.70 1540 ambiguous_tel 0 ALIGNMENT 269 Y12-14i08.p1k chr02 121 784 187232 187893 F 664 81.33 1153 reject_low 3 ALIGNMENT 728 Y12-14i08.p1k chr09 828 9 15074 15886 C 820 97.56 1153 ambiguous_tel 0 ALIGNMENT 0 Y12-14i08.p1k chr02 62 120 187232 187231 F 59 0.00 1153 reject_low 3 ALIGNMENT 728 Y12-14i08.p1k chr10 828 9 15057 15869 C 820 97.56 1153 ambiguous_tel 1 ALIGNMENT 668 Y12-14i08.p1k chr14 7 828 750603 751417 F 822 95.01 1153 reject_low 2 ALIGNMENT 699 Y12-14i08.q1k chr10 34 817 10897 11676 F 784 97.70 1540 ambiguous_tel 1 ALIGNMENT 0 Y12-14i09.q1k chr08 522 62 36024 36023 C 461 0.00 1440 reject_low 1 ALIGNMENT 341 Y12-14i09.q1k chr08 1005 523 35539 36023 C 483 91.10 1440 reject_low 1 ALIGNMENT 865 Y12-14i09.q1k chr12 1131 33 48019 49118 C 1099 94.18 1440 accept 0 ALIGNMENT 486 Y12-14i10.p1k chrm 826 147 17738 18394 C 680 95.88 1415 accept 0 ALIGNMENT 744 Y12-14i10.q1k chrm 36 871 13869 14704 F 836 98.80 1561 accept 0 ALIGNMENT 937 Y12-14i11.q1k chr08 32 1158 162852 163981 F 1127 95.56 1421 accept 0 ALIGNMENT 719 Y12-14i11.p1k chr08 907 64 166780 167617 C 844 96.45 1319 accept 0 ALIGNMENT 716 Y12-14i12.q1k chr05 953 27 364571 365497 C 927 93.64 1426 accept 0 ALIGNMENT 408 Y12-14i12.p1k chr05 131 748 359291 359880 F 618 92.07 1422 accept 0 ALIGNMENT 835 Y12-14i13.q1k chr16 30 948 547750 548665 F 919 98.15 1413 accept 0 ALIGNMENT 662 Y12-14i13.p1k chr16 926 59 552279 553138 C 868 93.55 1215 accept 0 ALIGNMENT 1052 Y12-14i14.q1k chr09 31 1207 178194 179372 F 1177 97.03 1485 accept 0 ALIGNMENT 852 Y12-14i14.p1k chr09 1024 3 181421 182437 C 1022 96.09 1164 accept 0 ALIGNMENT 0 Y12-14i14.q1k chr13 62 1414 500722 500721 F 1353 0.00 1485 reject_low 1 ALIGNMENT 21 Y12-14i14.q1k chr13 1415 1442 500722 500749 F 28 100.00 1485 reject_low 1 ALIGNMENT 677 Y12-14i16.q1k chr16 28 855 47733 48559 F 828 94.57 1468 accept 0 ALIGNMENT 970 Y12-14i17.q1k chr08 1097 36 142493 143571 C 1062 97.74 1340 accept 0 ALIGNMENT 882 Y12-14i17.p1k chr08 33 1079 139104 140148 F 1047 96.37 1111 accept 0 ALIGNMENT 1039 Y12-14i18.p1k chr12 19 1142 452501 453621 F 1124 97.86 1142 accept 0 ALIGNMENT 71 Y12-14i18.p1k chr12 19 93 490469 490543 F 75 98.67 1142 reject_low 2 ALIGNMENT 1040 Y12-14i18.q1k chr12 1211 33 455566 456748 C 1179 96.61 1457 accept 0 ALIGNMENT 0 Y12-14i18.p1k chr12 94 890 490543 490542 F 797 0.00 1142 reject_low 2 ALIGNMENT 1040 Y12-14i18.q1k chr12 1211 33 464703 465885 C 1179 96.61 1457 accept 1 ALIGNMENT 1039 Y12-14i18.p1k chr12 19 1142 461638 462758 F 1124 97.86 1142 accept 1 ALIGNMENT 838 Y12-14i19.p1k chr12 10 963 462313 463252 F 954 97.27 1121 accept_chi 2 ALIGNMENT 838 Y12-14i19.p1k chr12 10 963 453176 454115 F 954 97.27 1121 accept_chi 1 ALIGNMENT 980 Y12-14i19.q1k chr12 25 1129 540056 541159 F 1105 97.01 1385 accept_chi 0 ALIGNMENT 925 Y12-14i20.p1k chr07 15 1085 896038 897094 F 1071 97.29 1142 accept 0 ALIGNMENT 1022 Y12-14i20.q1k chr07 1226 36 899567 900775 C 1191 96.89 1412 accept 0 ALIGNMENT 20 Y12-14i21.p1k chr02 742 717 353620 353645 C 26 100.00 1027 reject_low 3 ALIGNMENT 0 Y12-14i21.p1k chr09 709 62 350059 350058 C 648 0.00 1027 reject_low 1 ALIGNMENT 0 Y12-14i21.p1k chr02 716 62 353646 353645 C 655 0.00 1027 reject_low 3 ALIGNMENT 837 Y12-14i21.p1k chr02 6 961 149631 150572 F 956 97.70 1027 accept 0 ALIGNMENT 20 Y12-14i21.p1k chr01 717 742 31494 31519 F 26 100.00 1027 reject_low 2 ALIGNMENT 0 Y12-14i21.p1k chr01 62 716 31494 31493 F 655 0.00 1027 reject_low 2 ALIGNMENT 1027 Y12-14i21.q1k chr02 1250 31 152781 153990 C 1220 96.23 1418 accept 0 ALIGNMENT 21 Y12-14i21.p1k chr09 742 710 350026 350058 C 33 96.97 1027 reject_low 1 ALIGNMENT 0 Y12-14i22.p1k chr02 714 615 643485 643484 C 100 0.00 1367 reject_low 1 ALIGNMENT 0 Y12-14i22.p1k chr10 137 420 203495 203494 F 284 0.00 1367 reject_low 3 ALIGNMENT 44 Y12-14i22.p1k chr02 614 421 643484 643677 C 194 77.84 1367 reject_low 1 ALIGNMENT 369 Y12-14i22.q1k chr06 497 1 148009 148498 C 497 93.56 852 accept 0 ALIGNMENT 616 Y12-14i22.p1k chr06 72 856 143981 144746 F 785 96.31 1367 accept 0 ALIGNMENT 44 Y12-14i22.p1k chr10 421 614 203495 203688 F 194 77.84 1367 reject_low 3 ALIGNMENT 0 Y12-14i22.p1k chr10 615 714 203688 203687 F 100 0.00 1367 reject_low 3 ALIGNMENT 0 Y12-14i22.p1k chr09 420 137 196845 196844 C 284 0.00 1367 reject_low 2 ALIGNMENT 44 Y12-14i22.p1k chr14 421 614 561784 561977 F 194 77.84 1367 reject_low 4 ALIGNMENT 0 Y12-14i22.p1k chr14 615 714 561977 561976 F 100 0.00 1367 reject_low 4 ALIGNMENT 0 Y12-14i22.p1k chr14 137 420 561784 561783 F 284 0.00 1367 reject_low 4 ALIGNMENT 0 Y12-14i22.p1k chr02 420 137 643678 643677 C 284 0.00 1367 reject_low 1 ALIGNMENT 44 Y12-14i22.p1k chr09 614 421 196651 196844 C 194 77.84 1367 reject_low 2 ALIGNMENT 0 Y12-14i22.p1k chr09 714 615 196652 196651 C 100 0.00 1367 reject_low 2 ALIGNMENT 0 Y12-14i23.p1k chr12 615 796 460016 460218 F 182 0.00 1033 reject_low 3 ALIGNMENT 0 Y12-14i23.p1k chr12 62 283 485696 485695 F 222 0.00 1033 reject_low 7 ALIGNMENT 0 Y12-14i23.p1k chr12 62 283 482044 482043 F 222 0.00 1033 reject_low 6 ALIGNMENT 680 Y12-14i23.p1k chr12 8 796 459399 460202 F 789 96.83 1033 reject_bad_break 0 ALIGNMENT 0 Y12-14i23.p1k chr12 403 699 472582 472581 F 297 0.00 1033 reject_low 5 ALIGNMENT 25 Y12-14i23.p1k chr12 797 834 460219 460254 F 38 94.74 1033 reject_bad_break 0 reject_low 3 ALIGNMENT 0 Y12-14i23.p1k chr12 797 796 460203 460218 F 0 0.00 1033 reject_bad_break 0 ALIGNMENT 119 Y12-14i23.p1k chr12 284 402 472464 472582 F 119 100.00 1033 reject_low 5 ALIGNMENT 0 Y12-14i23.p1k chr12 403 699 485814 485813 F 297 0.00 1033 reject_low 7 ALIGNMENT 937 Y12-14i23.q1k chr12 1066 34 463390 464425 C 1033 97.68 1351 reject_bad_break 0 ALIGNMENT 119 Y12-14i23.p1k chr12 284 402 482044 482162 F 119 100.00 1033 reject_low 6 ALIGNMENT 374 Y12-14i23.p1k chr12 8 402 468536 468930 F 395 98.99 1033 reject_low 2 ALIGNMENT 128 Y12-14i23.p1k chr12 284 417 489348 489481 F 134 98.51 1033 reject_low 4 ALIGNMENT 0 Y12-14i23.p1k chr12 62 283 489348 489347 F 222 0.00 1033 reject_low 4 ALIGNMENT 357 Y12-14i23.p1k chr12 215 614 459606 460015 F 400 97.25 1033 reject_low 3 ALIGNMENT 0 Y12-14i23.p1k chr12 403 699 482162 482161 F 297 0.00 1033 reject_low 6 ALIGNMENT 0 Y12-14i23.p1k chr12 403 699 468930 468929 F 297 0.00 1033 reject_low 2 ALIGNMENT 0 Y12-14i23.p1k chr12 62 214 459606 459605 F 153 0.00 1033 reject_low 3 ALIGNMENT 119 Y12-14i23.p1k chr12 284 402 485696 485814 F 119 100.00 1033 reject_low 7 ALIGNMENT 0 Y12-14i23.p1k chr12 418 699 489481 489480 F 282 0.00 1033 reject_low 4 ALIGNMENT 0 Y12-14i23.p1k chr12 62 283 472464 472463 F 222 0.00 1033 reject_low 5 ALIGNMENT 937 Y12-14i23.q1k chr12 1066 34 454253 455288 C 1033 97.68 1351 reject_low 1 ALIGNMENT 680 Y12-14i24.p1k chr15 59 835 621358 622129 F 777 97.43 1043 accept_chi 1 ALIGNMENT 899 Y12-14i24.q1k chr14 35 1079 502798 503859 F 1045 96.84 1319 accept_chi 0 ALIGNMENT 391 Y12-14i24.q1k chr14 55 488 502818 503252 F 434 98.62 1319 reject_low 2 ALIGNMENT 0 Y12-14i24.q1k chr14 489 896 503252 503251 F 408 0.00 1319 reject_low 2 ALIGNMENT 684 Y12-14j01.p1k chrm 926 60 17743 18598 C 867 97.46 1202 accept 0 ALIGNMENT 32 Y12-14j01.q1k chrm 68 31 909 946 C 38 100.00 1381 reject_low 2 ALIGNMENT 28 Y12-14j01.q1k chrm 31 68 65694 65732 F 38 97.37 1381 reject_low 6 ALIGNMENT 0 Y12-14j01.q1k chrm 767 69 72792 72791 C 699 0.00 1381 reject_low 4 ALIGNMENT 32 Y12-14j01.q1k chrm 68 31 6191 6228 C 38 100.00 1381 reject_low 3 ALIGNMENT 0 Y12-14j01.q1k chrm 69 767 65732 65731 F 699 0.00 1381 reject_low 6 ALIGNMENT 0 Y12-14j01.q1k chrm 767 69 6192 6191 C 699 0.00 1381 reject_low 3 ALIGNMENT 0 Y12-14j01.q1k chrm 767 71 56256 56255 C 697 0.00 1381 reject_low 8 ALIGNMENT 0 Y12-14j01.q1k chrm 767 69 910 909 C 699 0.00 1381 reject_low 2 ALIGNMENT 0 Y12-14j01.q1k chrm 96 767 77128 77127 F 672 0.00 1381 reject_low 1 ALIGNMENT 32 Y12-14j01.q1k chrm 68 31 72791 72828 C 38 100.00 1381 reject_low 4 ALIGNMENT 749 Y12-14j01.q1k chrm 66 1004 13628 14581 F 939 96.59 1381 accept 0 ALIGNMENT 25 Y12-14j01.q1k chrm 70 31 56255 56295 C 40 92.50 1381 reject_low 8 ALIGNMENT 29 Y12-14j01.q1k chrm 69 31 50487 50526 C 39 97.44 1381 reject_low 5 ALIGNMENT 0 Y12-14j01.q1k chrm 767 69 65067 65066 C 699 0.00 1381 reject_low 7 ALIGNMENT 27 Y12-14j01.q1k chrm 68 31 65066 65102 C 38 97.37 1381 reject_low 7 ALIGNMENT 0 Y12-14j01.q1k chrm 767 70 50488 50487 C 698 0.00 1381 reject_low 5 ALIGNMENT 42 Y12-14j01.q1k chrm 31 95 77062 77128 F 65 89.23 1381 reject_low 1 ALIGNMENT 796 Y12-14j03.p1k chr15 943 10 93821 94748 C 934 97.22 1080 accept 0 ALIGNMENT 997 Y12-14j03.q1k chr15 23 1202 89559 90729 F 1180 96.44 1458 accept 0 ALIGNMENT 904 Y12-14j04.q1k chr15 32 1173 373897 375029 F 1142 95.10 1458 accept 0 ALIGNMENT 888 Y12-14j04.p1k chr15 968 7 378464 379419 C 962 98.44 1111 accept 0 ALIGNMENT 761 Y12-14j06.q1k chr14 1054 33 174317 175348 C 1022 93.25 1404 accept 0 ALIGNMENT 795 Y12-14j06.p1k chr14 1 952 169573 170520 F 952 96.11 1125 accept 0 ALIGNMENT 796 Y12-14j07.p1k chr10 899 1 622060 622950 C 899 97.00 1117 accept_chi 1 ALIGNMENT 875 Y12-14j07.q1k chr16 30 1051 632874 633894 F 1022 96.58 1466 accept_chi 0 ALIGNMENT 266 Y12-14j08.q1k chr05 1024 454 323443 324008 C 571 83.54 1597 reject_low 1 ALIGNMENT 837 Y12-14j08.q1k chr09 35 1011 220742 221713 F 977 96.42 1597 accept 0 ALIGNMENT 752 Y12-14j08.p1k chr09 914 1 224793 225692 C 914 96.72 1267 accept 0 ALIGNMENT 0 Y12-14j08.q1k chr05 453 62 324009 324008 C 392 0.00 1597 reject_low 1 ALIGNMENT 630 Y12-14j09.p1k chr08 823 51 250077 250838 C 773 96.12 1344 accept 0 ALIGNMENT 786 Y12-14j09.q1k chr08 33 916 245958 246844 F 884 97.17 1514 accept 0 ALIGNMENT 813 Y12-14j10.q1k chr07 998 33 673185 674143 C 966 95.76 1486 accept 0 ALIGNMENT 514 Y12-14j10.p1k chr07 112 837 670219 670925 F 726 93.66 1234 accept 0 ALIGNMENT 932 Y12-14j11.q1k chr16 32 1049 703168 704186 F 1018 98.04 1403 accept 0 ALIGNMENT 677 Y12-14j11.p1k chr16 861 1 708268 709112 C 861 95.12 1232 accept 0 ALIGNMENT 887 Y12-14j12.q1k chr14 31 1058 550982 552013 F 1028 97.08 1398 accept 0 ALIGNMENT 774 Y12-14j13.p1k chr12 1003 13 467694 468671 C 991 94.75 1087 accept 0,1 ALIGNMENT 94 Y12-14j13.p1k chr06 132 239 31622 31729 F 108 98.15 1087 reject_low 3 ALIGNMENT 773 Y12-14j13.p1k chr12 998 13 458562 459534 C 986 94.83 1087 reject_low 2 ALIGNMENT 0 Y12-14j13.p1k chr06 240 645 31729 31728 F 406 0.00 1087 reject_low 3 ALIGNMENT 935 Y12-14j13.q1k chr12 38 1146 464360 465468 F 1109 95.67 1488 accept 1 ALIGNMENT 0 Y12-14j13.p1k chr06 62 131 31622 31621 F 70 0.00 1087 reject_low 3 ALIGNMENT 935 Y12-14j13.q1k chr12 38 1146 455223 456331 F 1109 95.67 1488 accept 0 ALIGNMENT 733 Y12-14j14.p1k chr16 899 46 100628 101473 C 854 97.07 1352 accept 0 ALIGNMENT 786 Y12-14j14.q1k chr16 33 1020 95620 96607 F 988 94.94 1459 accept 0 ALIGNMENT 556 Y12-14j15.q1k chr04 801 27 1525368 1526140 C 775 92.52 1469 ambiguous_tel 5 ALIGNMENT 571 Y12-14j15.q1k chr16 27 716 5826 6525 F 690 95.07 1469 ambiguous_tel 8 ALIGNMENT 0 Y12-14j15.q1k chr12 62 745 2 1 F 684 0.00 1469 reject_low 21 ALIGNMENT 625 Y12-14j15.q1k chr05 716 73 570325 570968 C 644 99.53 1469 ambiguous_tel 1 ALIGNMENT 59 Y12-14j15.q1k chr12 827 940 5732 5849 F 114 86.84 1469 reject_low 14 ALIGNMENT 335 Y12-14j15.q1k chr05 73 543 5895 6338 F 471 92.78 1469 reject_low 17 ALIGNMENT 537 Y12-14j15.q1k chr12 725 27 1071644 1072341 C 699 93.71 1469 reject_low 15 ALIGNMENT 473 Y12-14j15.q1k chr02 27 721 5173 5850 F 695 91.51 1469 reject_low 13 ALIGNMENT 580 Y12-14j15.q1k chr12 27 797 10507 11278 F 771 93.51 1469 ambiguous_tel 4 ALIGNMENT 60 Y12-14j15.q1k chr15 1063 806 1091023 1091282 C 258 79.07 1469 reject_low 20 ALIGNMENT 0 Y12-14j15.q1k chr08 716 62 562557 562556 C 655 0.00 1469 reject_low 19 ALIGNMENT 0 Y12-14j15.q1k chr10 62 749 2 1 F 688 0.00 1469 reject_low 18 ALIGNMENT 80 Y12-14j15.q1k chr08 1063 717 562211 562556 C 347 80.40 1469 reject_low 19 ALIGNMENT 0 Y12-14j15.q1k chr09 669 711 6948 6947 F 43 0.00 1469 ambiguous_tel 2 ALIGNMENT 565 Y12-14j15.q1k chr12 27 783 4972 5724 F 757 93.39 1469 reject_low 14 ALIGNMENT 87 Y12-14j15.q1k chr10 750 1063 2 306 F 314 82.17 1469 reject_low 18 ALIGNMENT 55 Y12-14j15.q1k chr13 765 1063 2 297 F 299 78.60 1469 reject_low 22 ALIGNMENT 49 Y12-14j15.q1k chr14 860 1063 4 207 F 204 79.41 1469 reject_low 23 ALIGNMENT 375 Y12-14j15.q1k chr16 431 27 942804 943209 C 405 98.02 1469 reject_low 16 ALIGNMENT 0 Y12-14j15.q1k chr05 544 711 6338 6337 F 168 0.00 1469 reject_low 17 ALIGNMENT 559 Y12-14j15.q1k chr13 27 761 4848 5584 F 735 93.61 1469 ambiguous_tel 6 ALIGNMENT 619 Y12-14j15.q1k chr09 27 668 6306 6948 F 642 99.38 1469 ambiguous_tel 2 ALIGNMENT 539 Y12-14j15.q1k chr12 792 73 1065075 1065771 C 720 93.89 1469 ambiguous_tel 9 ALIGNMENT 0 Y12-14j15.q1k chr15 805 62 1091283 1091282 C 744 0.00 1469 reject_low 20 ALIGNMENT 571 Y12-14j15.q1k chr07 716 27 1084352 1085051 C 690 95.07 1469 ambiguous_tel 7 ALIGNMENT 619 Y12-14j15.q1k chr10 27 668 6289 6931 F 642 99.38 1469 ambiguous_tel 3 ALIGNMENT 59 Y12-14j15.q1k chr12 746 1063 2 319 F 318 79.25 1469 reject_low 21 ALIGNMENT 0 Y12-14j15.q1k chr10 669 711 6931 6930 F 43 0.00 1469 ambiguous_tel 3 ALIGNMENT 0 Y12-14j15.q1k chr14 62 859 4 3 F 798 0.00 1469 reject_low 23 ALIGNMENT 0 Y12-14j15.q1k chr12 815 726 1071646 1071643 C 90 0.00 1469 reject_low 15 ALIGNMENT 604 Y12-14j15.q1k chr14 27 785 5917 6686 F 759 94.33 1469 ambiguous_tel 0 ALIGNMENT 0 Y12-14j15.q1k chr12 784 826 5725 5731 F 43 0.00 1469 reject_low 14 ALIGNMENT 60 Y12-14j15.q1k chr12 1063 816 1071396 1071645 C 248 79.44 1469 reject_low 15 ALIGNMENT 0 Y12-14j15.q1k chr16 711 432 942805 942804 C 280 0.00 1469 reject_low 16 ALIGNMENT 511 Y12-14j15.q1k chr06 27 797 4005 4765 F 771 91.05 1469 ambiguous_tel 11 ALIGNMENT 522 Y12-14j15.q1k chr08 797 27 556910 557659 C 771 91.70 1469 ambiguous_tel 10 ALIGNMENT 534 Y12-14j15.q1k chr15 716 27 1084616 1085305 C 690 93.77 1469 ambiguous_tel 12 ALIGNMENT 0 Y12-14j15.q1k chr13 62 764 2 1 F 703 0.00 1469 reject_low 22 ALIGNMENT 512 Y12-14j16.p1k chr15 720 38 910184 910850 C 683 93.56 1466 accept 0 ALIGNMENT 876 Y12-14j16.q1k chr15 33 1009 906826 907805 F 977 97.34 1467 accept 0 ALIGNMENT 114 Y12-14j17.p1k chr02 147 595 709679 710127 F 449 76.17 1136 reject_low 1 ALIGNMENT 0 Y12-14j17.p1k chr02 62 146 709679 709678 F 85 0.00 1136 reject_low 1 ALIGNMENT 856 Y12-14j17.p1k chr15 973 3 885514 886473 C 971 97.73 1136 accept 0 ALIGNMENT 743 Y12-14j17.q1k chr15 30 1012 882436 883412 F 983 93.29 1558 accept 0 ALIGNMENT 0 Y12-14j17.p1k chr02 596 725 710127 710126 F 130 0.00 1136 reject_low 1 ALIGNMENT 851 Y12-14j18.q1k chr12 1090 34 770992 772037 C 1057 95.18 1506 accept 0 ALIGNMENT 814 Y12-14j18.p1k chr12 3 969 767774 768719 F 967 97.41 1208 accept 0 ALIGNMENT 860 Y12-14j19.q1k chr04 1071 37 511681 512728 C 1035 95.36 1408 accept 0 ALIGNMENT 742 Y12-14j19.p1k chr04 3 930 507392 508302 F 928 96.34 1099 accept 0 ALIGNMENT 971 Y12-14j20.p1k chr12 1086 1 753772 754846 C 1086 98.25 1164 accept 0 ALIGNMENT 630 Y12-14j20.q1k chr12 33 946 750294 751195 F 914 93.22 1515 accept 0 ALIGNMENT 863 Y12-14j21.p1k chrm 998 11 16244 17224 C 988 98.28 1033 accept 0 ALIGNMENT 134 Y12-14j21.q1k chrm 32 245 13211 13425 F 214 94.86 1512 accept 0 ALIGNMENT 950 Y12-14j22.p1k chr16 27 1042 339258 340266 F 1016 98.52 1084 accept 0 ALIGNMENT 956 Y12-14j22.q1k chr16 1119 32 342328 343429 C 1088 97.06 1366 accept 0 ALIGNMENT 767 Y12-14j23.p1k chr04 11 938 1247360 1248276 F 928 96.23 1092 accept 0 ALIGNMENT 987 Y12-14j23.q1k chr04 1156 27 1250493 1251638 C 1130 96.28 1320 accept 0 ALIGNMENT 829 Y12-14k01.q1k chr01 1028 32 3307 4311 C 997 95.89 1332 accept 0 ALIGNMENT 114 Y12-14k01.p1k chr06 485 786 4920 5221 F 302 82.45 1276 ambiguous_tel 20 ALIGNMENT 0 Y12-14k01.p1k chr06 436 484 4913 4919 F 49 0.00 1276 ambiguous_tel 20 ALIGNMENT 288 Y12-14k01.p1k chr12 830 218 1064550 1065153 C 613 86.62 1276 ambiguous_tel 4 ALIGNMENT 164 Y12-14k01.p1k chr14 270 811 6617 7136 F 542 81.92 1276 ambiguous_tel 15 ALIGNMENT 194 Y12-14k01.p1k chr11 282 786 2 501 F 505 83.96 1276 ambiguous_tel 13 ALIGNMENT 194 Y12-14k01.p1k chr10 786 238 745125 745666 C 549 83.42 1276 ambiguous_tel 9 ALIGNMENT 150 Y12-14k01.p1k chr12 190 786 11199 11777 F 597 81.24 1276 ambiguous_tel 11 ALIGNMENT 151 Y12-14k01.p1k chr08 769 217 556434 556985 C 553 81.19 1276 ambiguous_tel 16 ALIGNMENT 163 Y12-14k01.p1k chr15 663 383 1084333 1084611 C 281 89.68 1276 ambiguous_tel 19 ALIGNMENT 201 Y12-14k01.p1k chr13 302 782 5545 6030 F 481 84.82 1276 ambiguous_tel 12 ALIGNMENT 241 Y12-14k01.p1k chr13 786 217 923847 924422 C 570 85.61 1276 ambiguous_tel 6 ALIGNMENT 117 Y12-14k01.p1k chr11 769 500 665868 666130 C 270 84.44 1276 ambiguous_tel 18 ALIGNMENT 183 Y12-14k01.p1k chr14 794 96 783585 784265 C 699 81.97 1276 ambiguous_tel 2 ALIGNMENT 236 Y12-14k01.p1k chr09 814 274 439353 439885 C 541 85.40 1276 ambiguous_tel 5 ALIGNMENT 47 Y12-14k01.p1k chr06 217 435 4697 4912 F 219 83.11 1276 ambiguous_tel 20 ALIGNMENT 0 Y12-14k01.p1k chr15 382 347 1084612 1084611 C 36 0.00 1276 ambiguous_tel 19 ALIGNMENT 199 Y12-14k01.p1k chr03 769 255 316105 316608 C 515 84.47 1276 ambiguous_tel 10 ALIGNMENT 214 Y12-14k01.p1k chr15 255 786 4 539 F 532 84.21 1276 ambiguous_tel 7 ALIGNMENT 195 Y12-14k01.p1k chr02 782 302 812687 813174 C 481 84.41 1276 ambiguous_tel 14 ALIGNMENT 154 Y12-14k01.p1k chr07 318 769 10 452 F 452 82.52 1276 ambiguous_tel 17 ALIGNMENT 40 Y12-14k01.p1k chr15 786 697 1084228 1084315 C 90 83.33 1276 ambiguous_tel 19 ALIGNMENT 0 Y12-14k01.p1k chr15 696 664 1084316 1084332 C 33 0.00 1276 ambiguous_tel 19 ALIGNMENT 176 Y12-14k01.p1k chr03 94 786 102 790 F 693 81.24 1276 ambiguous_tel 3 ALIGNMENT 192 Y12-14k01.p1k chr04 217 782 24 590 F 566 83.39 1276 ambiguous_tel 8 ALIGNMENT 174 Y12-14k01.p1k chr04 896 244 1524822 1525450 C 653 80.70 1276 ambiguous_tel 1 ALIGNMENT 0 Y12-14k01.p1k chr11 499 347 666131 666130 C 153 0.00 1276 ambiguous_tel 18 ALIGNMENT 990 Y12-14k03.q1k chr04 1214 34 112415 113608 C 1181 96.10 1401 accept 0 ALIGNMENT 728 Y12-14k03.p1k chr04 59 896 110086 110914 F 838 97.61 1292 accept 0 ALIGNMENT 954 Y12-14k04.q1k chr04 1204 32 112423 113608 C 1173 95.06 1472 accept 0 ALIGNMENT 924 Y12-14k04.p1k chr04 1 996 110100 111091 F 996 98.59 1116 accept 0 ALIGNMENT 0 Y12-14k05.q1k chr08 62 93 291786 291785 F 32 0.00 1416 reject_low 1 ALIGNMENT 169 Y12-14k05.q1k chr08 94 737 291786 292429 F 644 76.09 1416 reject_low 1 ALIGNMENT 0 Y12-14k05.q1k chr12 878 601 290568 290567 C 278 0.00 1416 reject_low 3 ALIGNMENT 136 Y12-14k05.q1k chr04 186 717 1160562 1161093 F 532 75.94 1416 reject_low 2 ALIGNMENT 0 Y12-14k05.q1k chr04 62 185 1160562 1160561 F 124 0.00 1416 reject_low 2 ALIGNMENT 997 Y12-14k05.q1k chr08 27 1155 295477 296615 F 1129 97.08 1416 accept 0 ALIGNMENT 93 Y12-14k05.q1k chr12 600 151 290567 291016 C 450 74.67 1416 reject_low 3 ALIGNMENT 0 Y12-14k05.q1k chr04 718 878 1161093 1161092 F 161 0.00 1416 reject_low 2 ALIGNMENT 0 Y12-14k05.q1k chr08 738 878 292429 292428 F 141 0.00 1416 reject_low 1 ALIGNMENT 715 Y12-14k05.p1k chr08 862 6 299459 300301 C 857 96.73 1040 accept 0 ALIGNMENT 0 Y12-14k05.q1k chr12 150 62 291017 291016 C 89 0.00 1416 reject_low 3 ALIGNMENT 248 Y12-14k06.p1k chr02 417 800 236507 236890 F 384 88.80 1151 reject_low 2 ALIGNMENT 877 Y12-14k06.p1k chr04 1019 3 914107 915108 C 1017 97.15 1151 accept_chi 1 ALIGNMENT 868 Y12-14k06.q1k chr02 1040 34 749742 750747 C 1007 96.52 1537 accept_chi 0 ALIGNMENT 0 Y12-14k06.p1k chr02 62 416 236507 236506 F 355 0.00 1151 reject_low 2 ALIGNMENT 855 Y12-14k08.q1k chr13 36 1033 376157 377160 F 998 96.49 1405 ambiguous_trans 15 ALIGNMENT 861 Y12-14k08.q1k chr04 1033 36 1208151 1209154 C 998 96.69 1405 ambiguous_trans 7 ALIGNMENT 855 Y12-14k08.q1k chr02 1033 36 261031 262034 C 998 96.49 1405 ambiguous_trans 11 ALIGNMENT 873 Y12-14k08.q1k chr05 36 1033 446853 447856 F 998 97.09 1405 ambiguous_trans 1 ALIGNMENT 855 Y12-14k08.q1k chr08 36 1033 547065 548068 F 998 96.49 1405 ambiguous_trans 12 ALIGNMENT 870 Y12-14k08.q1k chr13 1033 36 197792 198795 C 998 96.99 1405 ambiguous_trans 3 ALIGNMENT 858 Y12-14k08.q1k chr13 1033 36 185625 186628 C 998 96.59 1405 ambiguous_trans 10 ALIGNMENT 852 Y12-14k08.q1k chr04 36 1033 881755 882758 F 998 96.39 1405 ambiguous_trans 20 ALIGNMENT 858 Y12-14k08.q1k chr05 36 1033 495952 496955 F 998 96.59 1405 ambiguous_trans 9 ALIGNMENT 864 Y12-14k08.q1k chr10 1033 36 473838 474841 C 998 96.79 1405 ambiguous_trans 5 ALIGNMENT 849 Y12-14k08.q1k chr14 36 945 100065 100976 F 910 98.90 1405 ambiguous_trans 24 ALIGNMENT 855 Y12-14k08.q1k chr16 1033 36 845869 846872 C 998 96.49 1405 ambiguous_trans 19 ALIGNMENT 855 Y12-14k08.q1k chr12 36 1033 218542 219545 F 998 96.49 1405 ambiguous_trans_ua 14 ALIGNMENT 873 Y12-14k08.q1k chr15 1033 36 119163 120166 C 998 97.09 1405 ambiguous_trans 2 ALIGNMENT 855 Y12-14k08.q1k chr10 1033 36 479422 480425 C 998 96.49 1405 ambiguous_trans 13 ALIGNMENT 864 Y12-14k08.q1k chr12 36 1033 479435 480438 F 998 96.79 1405 ambiguous_trans 6 ALIGNMENT 755 Y12-14k08.p1k chr14 41 962 439937 440847 F 922 95.66 1256 accept 0 ALIGNMENT 852 Y12-14k08.q1k chr16 36 1033 854086 855089 F 998 96.39 1405 ambiguous_trans 21 ALIGNMENT 867 Y12-14k08.q1k chr16 1033 36 57912 58915 C 998 96.89 1405 ambiguous_trans 4 ALIGNMENT 852 Y12-14k08.q1k chr02 945 36 222589 223500 C 910 99.01 1405 ambiguous_trans 22 ALIGNMENT 855 Y12-14k08.q1k chr16 36 1033 808098 809101 F 998 96.49 1405 ambiguous_trans 18 ALIGNMENT 855 Y12-14k08.q1k chr14 1033 36 520621 521624 C 998 96.49 1405 ambiguous_trans 16 ALIGNMENT 849 Y12-14k08.q1k chr13 36 945 360459 361370 F 910 98.90 1405 ambiguous_trans 23 ALIGNMENT 861 Y12-14k08.q1k chr12 1033 36 652283 653286 C 998 96.69 1405 ambiguous_trans 8 ALIGNMENT 855 Y12-14k08.q1k chr15 1033 36 596276 597279 C 998 96.49 1405 ambiguous_trans 17 ALIGNMENT 0 Y12-14k09.q1k chr06 232 62 186263 186262 C 171 0.00 1341 reject_low 9 ALIGNMENT 0 Y12-14k09.q1k chr16 323 373 650578 650577 F 51 0.00 1341 reject_low 3 ALIGNMENT 23 Y12-14k09.q1k chr10 292 235 470037 470094 C 58 98.28 1341 reject_low 8 ALIGNMENT 31 Y12-14k09.q1k chr16 225 322 650481 650578 F 98 93.88 1341 reject_low 3 ALIGNMENT 23 Y12-14k09.q1k chr06 289 233 186206 186262 C 57 96.49 1341 reject_low 9 ALIGNMENT 26 Y12-14k09.q1k chr13 226 330 587629 587733 F 105 91.43 1341 reject_low 6 ALIGNMENT 676 Y12-14k09.p1k chr13 876 61 91247 92044 C 816 96.20 1324 accept 0 ALIGNMENT 0 Y12-14k09.q1k chr04 342 373 778836 778835 F 32 0.00 1341 reject_low 2 ALIGNMENT 0 Y12-14k09.q1k chr06 373 290 186207 186206 C 84 0.00 1341 reject_low 9 ALIGNMENT 31 Y12-14k09.q1k chr02 228 298 68280 68350 F 71 97.18 1341 reject_low 5 ALIGNMENT 0 Y12-14k09.q1k chr09 268 62 105827 105826 C 207 0.00 1341 reject_low 4 ALIGNMENT 0 Y12-14k09.q1k chr10 234 62 470095 470094 C 173 0.00 1341 reject_low 8 ALIGNMENT 0 Y12-14k09.q1k chr02 62 227 68280 68279 F 166 0.00 1341 reject_low 5 ALIGNMENT 0 Y12-14k09.q1k chr04 62 231 778726 778725 F 170 0.00 1341 reject_low 2 ALIGNMENT 0 Y12-14k09.q1k chr13 62 225 587629 587628 F 164 0.00 1341 reject_low 6 ALIGNMENT 0 Y12-14k09.q1k chr16 62 224 650481 650480 F 163 0.00 1341 reject_low 3 ALIGNMENT 40 Y12-14k09.q1k chr04 232 341 778726 778836 F 110 94.55 1341 reject_low 2 ALIGNMENT 0 Y12-14k09.q1k chr02 299 373 68350 68349 F 75 0.00 1341 reject_low 5 ALIGNMENT 0 Y12-14k09.q1k chr05 226 62 143007 143006 C 165 0.00 1341 reject_low 7 ALIGNMENT 0 Y12-14k09.q1k chr09 224 62 105814 105813 C 163 0.00 1341 reject_low 10 ALIGNMENT 25 Y12-14k09.q1k chr09 332 269 105763 105826 C 64 96.88 1341 reject_low 4 ALIGNMENT 0 Y12-14k09.q1k chr09 373 333 105764 105763 C 41 0.00 1341 reject_low 4 ALIGNMENT 22 Y12-14k09.q1k chr05 330 227 142903 143006 C 104 90.38 1341 reject_low 7 ALIGNMENT 0 Y12-14k09.q1k chr10 373 293 470038 470037 C 81 0.00 1341 reject_low 8 ALIGNMENT 0 Y12-14k09.q1k chr13 331 373 587733 587732 F 43 0.00 1341 reject_low 6 ALIGNMENT 0 Y12-14k09.p1k chr12 718 92 449894 449893 C 627 0.00 1324 reject_low 1 ALIGNMENT 0 Y12-14k09.q1k chr09 373 269 105771 105770 C 105 0.00 1341 reject_low 10 ALIGNMENT 0 Y12-14k09.q1k chr05 373 331 142904 142903 C 43 0.00 1341 reject_low 7 ALIGNMENT 38 Y12-14k09.p1k chr12 772 719 449841 449893 C 54 92.59 1324 reject_low 1 ALIGNMENT 20 Y12-14k09.q1k chr09 268 225 105770 105813 C 44 97.73 1341 reject_low 10 ALIGNMENT 275 Y12-14k09.q1k chr13 31 568 86747 87295 F 538 88.10 1341 accept 0 ALIGNMENT 504 Y12-14k10.q1k chr02 35 929 233251 234139 F 895 86.93 1435 accept 0 ALIGNMENT 894 Y12-14k13.q1k chr12 37 1050 572021 573050 F 1014 97.44 1357 accept 0 ALIGNMENT 970 Y12-14k15.q1k chr04 35 1111 1200399 1201479 F 1077 97.96 1376 accept 0 ALIGNMENT 658 Y12-14k15.p1k chr04 853 65 1203562 1204338 C 789 96.45 1261 accept 0 ALIGNMENT 711 Y12-14k16.p1k chr02 903 51 557465 558300 C 853 96.95 1268 accept 0 ALIGNMENT 933 Y12-14k16.q1k chr02 32 1091 553858 554921 F 1060 96.79 1481 accept 0 ALIGNMENT 0 Y12-14k18.p1k chr13 712 267 238327 238326 C 446 0.00 1152 reject_low 2 ALIGNMENT 0 Y12-14k18.p1k chr15 217 62 110846 110845 C 156 0.00 1152 reject_low 1 ALIGNMENT 767 Y12-14k18.p1k chr12 971 1 104735 105686 C 971 96.81 1152 accept 0 ALIGNMENT 968 Y12-14k18.q1k chr12 35 1184 100759 101912 F 1150 95.83 1521 accept 0 ALIGNMENT 23 Y12-14k18.p1k chr15 272 218 110791 110845 C 55 90.91 1152 reject_low 1 ALIGNMENT 0 Y12-14k18.p1k chr13 218 62 238374 238373 C 157 0.00 1152 reject_low 2 ALIGNMENT 0 Y12-14k18.p1k chr15 712 273 110792 110791 C 440 0.00 1152 reject_low 1 ALIGNMENT 22 Y12-14k18.p1k chr13 266 219 238326 238373 C 48 91.67 1152 reject_low 2 ALIGNMENT 964 Y12-14k19.q1k chr16 1111 25 129723 130819 C 1087 96.69 1343 accept 0 ALIGNMENT 706 Y12-14k20.p1k chr12 889 10 460394 461256 C 880 95.68 1246 accept 0 ALIGNMENT 955 Y12-14k20.q1k chr12 33 1184 457625 458801 F 1152 95.83 1416 accept 0 ALIGNMENT 597 Y12-14k20.p1k chr12 721 10 451419 452119 C 712 96.35 1246 reject_low 2 ALIGNMENT 266 Y12-14k20.p1k chr12 351 10 489754 490087 C 342 94.44 1246 reject_low 3 ALIGNMENT 0 Y12-14k20.p1k chr12 686 352 489755 489754 C 335 0.00 1246 reject_low 3 ALIGNMENT 955 Y12-14k20.q1k chr12 33 1184 466762 467938 F 1152 95.83 1416 reject_low 1 ALIGNMENT 970 Y12-14k21.q1k chr15 36 1093 853211 854273 F 1058 98.20 1346 accept 0 ALIGNMENT 802 Y12-14k21.p1k chr15 900 2 857754 858645 C 899 98.33 1046 accept 0 ALIGNMENT 776 Y12-14k22.p1k chr04 905 1 831685 832571 C 905 96.91 1055 accept 0 ALIGNMENT 1029 Y12-14k22.q1k chr04 28 1193 826106 827283 F 1166 97.26 1347 accept 0 ALIGNMENT 379 Y12-14k24.p1k chr16 52 718 301132 301791 F 667 87.56 1147 accept 0 ALIGNMENT 898 Y12-14k24.q1k chr16 1141 33 304694 305787 C 1109 95.67 1380 accept 0 ALIGNMENT 986 Y12-14l01.q1k chr04 1230 34 933826 935035 C 1197 96.41 1377 accept 0 ALIGNMENT 699 Y12-14l01.p1k chr04 49 909 929473 930318 F 861 95.82 1236 accept 0 ALIGNMENT 720 Y12-14l02.p1k chr14 964 53 362508 363405 C 912 95.29 1225 accept_chi 1 ALIGNMENT 1031 Y12-14l02.q1k chr05 39 1245 254120 255334 F 1207 96.44 1411 accept_chi 0 ALIGNMENT 759 Y12-14l03.p1k chr07 2 914 205727 206632 F 913 96.60 1107 accept 0 ALIGNMENT 941 Y12-14l03.q1k chr07 1124 40 210529 211621 C 1085 96.68 1431 accept 0 ALIGNMENT 1002 Y12-14l04.q1k chr07 31 1216 936052 937252 F 1186 96.12 1445 accept 0 ALIGNMENT 543 Y12-14l04.p1k chr07 982 46 940888 941817 C 937 86.98 1211 accept 0 ALIGNMENT 891 Y12-14l05.q1k chr05 1100 37 216897 217980 C 1064 96.71 1393 accept 0 ALIGNMENT 855 Y12-14l05.p1k chr05 1 985 212633 213605 F 985 97.46 1153 accept 0 ALIGNMENT 225 Y12-14l06.p1k chr03 4 240 293496 293732 F 237 100.00 1163 reject_low 2 ALIGNMENT 884 Y12-14l06.p1k chr03 4 1075 12707 13767 F 1072 96.18 1163 accept 0 ALIGNMENT 884 Y12-14l06.p1k chr03 4 1075 199862 200922 F 1072 96.18 1163 reject_low 1 ALIGNMENT 0 Y12-14l06.p1k chr03 241 743 293732 293731 F 503 0.00 1163 reject_low 2 ALIGNMENT 661 Y12-14l06.q1k chr03 823 29 16236 17026 C 795 95.60 1539 accept 0 ALIGNMENT 647 Y12-14l07.p1k chr02 61 827 603501 604255 F 767 97.13 1377 accept 0 ALIGNMENT 828 Y12-14l07.q1k chr02 997 33 607134 608092 C 965 96.79 1468 accept 0 ALIGNMENT 931 Y12-14l08.q1k chr04 36 1166 562278 563418 F 1131 95.58 1452 accept 0 ALIGNMENT 746 Y12-14l08.p1k chr04 918 39 566556 567423 C 880 97.27 1425 accept 0 ALIGNMENT 651 Y12-14l09.p1k chr15 884 57 642530 643336 C 828 95.41 1430 accept 0 ALIGNMENT 728 Y12-14l09.q1k chr15 31 1003 640344 641311 F 973 93.53 1508 accept 0 ALIGNMENT 204 Y12-14l10.p1k chr02 253 880 163114 163738 F 628 78.66 1174 reject_low 1 ALIGNMENT 848 Y12-14l10.p1k chr02 1048 1 416045 417082 C 1048 95.13 1174 accept 0 ALIGNMENT 969 Y12-14l10.q1k chr02 39 1153 413076 414200 F 1115 96.86 1431 accept 0 ALIGNMENT 0 Y12-14l10.p1k chr02 62 252 163114 163113 F 191 0.00 1174 reject_low 1 ALIGNMENT 872 Y12-14l11.p1k chr07 12 989 190519 191489 F 978 97.55 1207 accept 0 ALIGNMENT 1011 Y12-14l11.q1k chr07 1201 39 195445 196624 C 1163 96.65 1439 accept 0 ALIGNMENT 713 Y12-14l12.q1k chr04 31 877 1138117 1138954 F 847 96.22 1555 accept 0 ALIGNMENT 790 Y12-14l12.p1k chr04 1047 40 1142532 1143526 C 1008 94.74 1283 accept 0 ALIGNMENT 949 Y12-14l13.q1k chr13 28 1140 575262 576385 F 1113 96.50 1428 accept 0 ALIGNMENT 773 Y12-14l13.p1k chr13 951 4 578439 579369 C 948 96.31 1151 accept 0 ALIGNMENT 956 Y12-14l15.q1k chr02 1153 35 762512 763620 C 1119 96.51 1489 accept 0 ALIGNMENT 648 Y12-14l15.p1k chr02 69 869 757966 758744 F 801 96.25 1311 accept 0 ALIGNMENT 622 Y12-14l16.p1k chr10 53 836 124074 124832 F 784 95.79 1316 accept 0 ALIGNMENT 850 Y12-14l16.q1k chr10 1081 33 127076 128127 C 1049 95.04 1465 accept 0 ALIGNMENT 627 Y12-14l17.p1k chr03 51 788 75839 76572 F 738 95.93 1094 accept 0 ALIGNMENT 1018 Y12-14l17.q1k chr03 1222 36 79448 80647 C 1187 96.21 1417 accept 0 ALIGNMENT 1017 Y12-14l18.q1k chr09 1170 34 312668 313804 C 1137 97.36 1482 accept_chi 0 ALIGNMENT 793 Y12-14l18.p1k chr04 1 934 1251534 1252451 F 934 96.47 1118 accept_chi 1 ALIGNMENT 0 Y12-14l21.q1k chr12 895 824 18655 18654 C 72 0.00 1413 reject_low 1 ALIGNMENT 0 Y12-14l21.q1k chr12 133 62 19344 19343 C 72 0.00 1413 reject_low 1 ALIGNMENT 675 Y12-14l21.p1k chr16 62 948 20621 21495 F 887 94.14 1129 accept 0 ALIGNMENT 101 Y12-14l21.q1k chr12 823 134 18654 19343 C 690 72.17 1413 reject_low 1 ALIGNMENT 988 Y12-14l21.q1k chr16 1298 36 23170 24435 C 1263 93.98 1413 accept 0 ALIGNMENT 673 Y12-14l23.q1k chr12 32 873 360445 361281 F 842 94.42 1422 accept 0 ALIGNMENT 370 Y12-14l23.p1k chr04 262 789 1531371 1531902 F 528 91.29 1306 ambiguous_tel 16 ALIGNMENT 386 Y12-14l23.p1k chr02 862 262 4 603 C 601 89.68 1306 ambiguous_tel 11 ALIGNMENT 379 Y12-14l23.p1k chr13 861 262 186 784 C 600 89.50 1306 ambiguous_tel 14 ALIGNMENT 375 Y12-14l23.p1k chr15 262 846 1090536 1091120 F 585 89.74 1306 ambiguous_tel 15 ALIGNMENT 391 Y12-14l23.p1k chr05 847 262 2 587 C 586 90.61 1306 ambiguous_tel 12 ALIGNMENT 383 Y12-14l23.p1k chr12 262 862 1077572 1078171 F 601 89.68 1306 ambiguous_tel 13 ALIGNMENT 389 Y12-14l23.p1k chr08 262 939 561724 562394 F 678 88.05 1306 ambiguous_tel 5 ALIGNMENT 401 Y12-14l23.p1k chr14 939 262 24 691 C 678 88.64 1306 ambiguous_tel 3 ALIGNMENT 390 Y12-14l23.p1k chr16 857 262 9 600 C 596 90.27 1306 ambiguous_tel 10 ALIGNMENT 392 Y12-14l23.p1k chr16 262 861 947377 947972 F 600 90.17 1306 ambiguous_tel 8 ALIGNMENT 402 Y12-14l23.p1k chr05 262 939 576200 576867 F 678 88.64 1306 ambiguous_tel 2 ALIGNMENT 442 Y12-14l23.p1k chr09 847 262 223 803 C 586 93.00 1306 ambiguous_tel 6 ALIGNMENT 392 Y12-14l23.p1k chr12 262 939 1070909 1071579 F 678 88.20 1306 ambiguous_tel 4 ALIGNMENT 462 Y12-14l23.p1k chr10 938 262 122 786 C 677 91.29 1306 ambiguous_tel 1 ALIGNMENT 380 Y12-14l23.p1k chr12 871 262 5836 6443 C 610 89.34 1306 ambiguous_tel 9 ALIGNMENT 396 Y12-14l23.p1k chr07 262 870 1090277 1090880 F 609 90.15 1306 ambiguous_tel 7 ALIGNMENT 366 Y12-14l23.p1k chr08 844 262 186 768 C 583 89.37 1306 ambiguous_tel 17 ALIGNMENT 341 Y12-14l23.p1k chr12 846 262 222 800 C 585 88.38 1306 ambiguous_tel 18 ALIGNMENT 1070 Y12-14l24.q1k chr12 36 1225 453366 454564 F 1190 97.06 1332 accept 0 ALIGNMENT 520 Y12-14l24.p1k chr12 789 67 467215 467923 C 723 91.56 1038 accept 1 ALIGNMENT 520 Y12-14l24.p1k chr12 789 67 458078 458786 C 723 91.56 1038 accept 0 ALIGNMENT 1070 Y12-14l24.q1k chr12 36 1225 462503 463701 F 1190 97.06 1332 accept 1 ALIGNMENT 0 Y12-14m02.p1k chr15 106 92 896937 896936 C 15 0.00 1275 reject_low 1 ALIGNMENT 0 Y12-14m02.p1k chr15 778 193 896852 896851 C 586 0.00 1275 reject_low 1 ALIGNMENT 703 Y12-14m02.p1k chr12 47 914 507392 508243 F 868 96.66 1275 accept 0 ALIGNMENT 25 Y12-14m02.p1k chr15 192 107 896851 896936 C 86 91.86 1275 reject_low 1 ALIGNMENT 903 Y12-14m02.q1k chr12 1033 31 511470 512474 C 1003 97.41 1462 accept 0 ALIGNMENT 853 Y12-14m03.p1k chr04 972 10 920635 921594 C 963 97.82 1089 accept 0 ALIGNMENT 889 Y12-14m03.q1k chr04 33 1045 915914 916941 F 1013 97.04 1295 accept 0 ALIGNMENT 0 Y12-14m04.q1k chr15 149 62 854258 854257 C 88 0.00 1399 reject_low 2 ALIGNMENT 0 Y12-14m04.q1k chr01 224 873 166340 166339 F 650 0.00 1399 reject_low 3 ALIGNMENT 0 Y12-14m04.q1k chr05 150 62 312092 312091 C 89 0.00 1399 reject_low 4 ALIGNMENT 0 Y12-14m04.q1k chr15 873 224 854185 854184 C 650 0.00 1399 reject_low 2 ALIGNMENT 0 Y12-14m04.q1k chr07 62 150 794422 794421 F 89 0.00 1399 reject_low 1 ALIGNMENT 0 Y12-14m04.q1k chr01 62 150 166268 166267 F 89 0.00 1399 reject_low 3 ALIGNMENT 0 Y12-14m04.q1k chr05 873 224 312020 312019 C 650 0.00 1399 reject_low 4 ALIGNMENT 73 Y12-14m04.q1k chr07 151 224 794422 794495 F 74 100.00 1399 reject_low 1 ALIGNMENT 0 Y12-14m04.q1k chr07 225 873 794495 794494 F 649 0.00 1399 reject_low 1 ALIGNMENT 1005 Y12-14m04.q1k chr12 1240 37 213865 215070 C 1204 95.51 1399 accept 0 ALIGNMENT 72 Y12-14m04.q1k chr05 223 151 312019 312091 C 73 100.00 1399 reject_low 4 ALIGNMENT 73 Y12-14m04.q1k chr15 223 150 854184 854257 C 74 100.00 1399 reject_low 2 ALIGNMENT 751 Y12-14m04.p1k chr12 57 954 209504 210390 F 898 96.88 1246 accept 0 ALIGNMENT 72 Y12-14m04.q1k chr01 151 223 166268 166340 F 73 100.00 1399 reject_low 3 ALIGNMENT 0 Y12-14m05.q1k chr08 780 820 292301 292300 F 41 0.00 1399 reject_low 2 ALIGNMENT 207 Y12-14m05.q1k chr08 276 865 287966 288556 F 590 79.66 1399 reject_low 1 ALIGNMENT 0 Y12-14m05.q1k chr08 62 275 287966 287965 F 214 0.00 1399 reject_low 1 ALIGNMENT 96 Y12-14m05.q1k chr13 794 397 288363 288760 C 398 75.88 1399 reject_low 3 ALIGNMENT 0 Y12-14m05.q1k chr13 396 62 288761 288760 C 335 0.00 1399 reject_low 3 ALIGNMENT 0 Y12-14m05.q1k chr08 105 318 291627 291840 F 214 0.00 1399 reject_low 2 ALIGNMENT 27 Y12-14m05.q1k chr08 54 104 291576 291626 F 51 86.27 1399 reject_low 2 ALIGNMENT 133 Y12-14m05.q1k chr08 319 779 291841 292301 F 461 77.87 1399 reject_low 2 ALIGNMENT 50 Y12-14m05.q1k chr15 883 420 25482 25946 C 464 71.98 1399 reject_low 4 ALIGNMENT 1005 Y12-14m05.q1k chr12 1161 31 290179 291306 C 1131 97.17 1399 accept 0 ALIGNMENT 0 Y12-14m05.q1k chr13 820 795 288364 288363 C 26 0.00 1399 reject_low 3 ALIGNMENT 838 Y12-14m05.p1k chr12 6 969 286933 287882 F 964 97.41 1070 accept 0 ALIGNMENT 0 Y12-14m05.q1k chr15 419 62 25947 25946 C 358 0.00 1399 reject_low 4 ALIGNMENT 784 Y12-14m06.p1k chr04 974 45 1440035 1440952 C 930 96.88 1279 accept 0 ALIGNMENT 895 Y12-14m06.q1k chr04 32 1105 1436587 1437666 F 1074 96.09 1383 accept 0 ALIGNMENT 958 Y12-14m07.q1k chr11 31 1133 42945 44064 F 1103 96.92 1363 accept 0 ALIGNMENT 849 Y12-14m10.q1k chr04 35 974 411601 412539 F 940 97.55 1486 accept 0 ALIGNMENT 843 Y12-14m10.p1k chr04 1042 1 416673 417698 C 1042 95.78 1069 accept 0 ALIGNMENT 921 Y12-14m14.q1k chr04 38 1100 1067127 1068204 F 1063 97.18 1375 accept 0 ALIGNMENT 809 Y12-14m15.p1k chr01 49 986 143861 144786 F 938 96.91 1184 accept 0 ALIGNMENT 976 Y12-14m15.q1k chr01 1170 27 146620 147771 C 1144 96.68 1355 accept 0 ALIGNMENT 887 Y12-14m16.p1k chr09 1070 4 343013 344063 C 1067 95.78 1146 accept 0 ALIGNMENT 1019 Y12-14m16.q1k chr09 37 1221 339621 340829 F 1185 96.29 1418 accept 0 ALIGNMENT 257 Y12-14m16.q1k chr13 54 898 760103 760947 F 845 77.16 1418 reject_low 1 ALIGNMENT 943 Y12-14m17.q1k chr05 1108 37 407461 408546 C 1072 97.57 1368 accept 0 ALIGNMENT 631 Y12-14m17.p1k chr05 91 916 403191 403996 F 826 94.79 1222 accept 0 ALIGNMENT 891 Y12-14m18.q1k chr08 1121 35 499905 501004 C 1087 95.40 1434 accept 0 ALIGNMENT 787 Y12-14m18.p1k chr08 52 1022 494439 495395 F 971 95.98 1231 accept 0 ALIGNMENT 0 Y12-14m19.q1k chr08 62 199 3743 3742 F 138 0.00 1393 reject_low 32 ALIGNMENT 794 Y12-14m19.p1k chr12 56 973 1074395 1075300 F 918 96.62 1177 reject_low 10 ALIGNMENT 906 Y12-14m19.q1k chr14 34 1262 4796 6064 F 1229 92.43 1393 reject_low 16 ALIGNMENT 749 Y12-14m19.q1k chr02 200 1262 4212 5320 F 1063 91.63 1393 reject_low 30 ALIGNMENT 558 Y12-14m19.p1k chr08 973 304 2912 3567 C 670 95.82 1177 reject_low 25 ALIGNMENT 824 Y12-14m19.p1k chr10 973 56 3334 4239 C 918 97.71 1177 reject_low 2 ALIGNMENT 797 Y12-14m19.p1k chr05 973 56 3027 3932 C 918 96.73 1177 reject_low 4 ALIGNMENT 558 Y12-14m19.p1k chr12 973 304 3180 3835 C 670 95.82 1177 reject_low 26 ALIGNMENT 0 Y12-14m19.p1k chr16 107 303 944342 944341 F 197 0.00 1177 reject_low 24 ALIGNMENT 750 Y12-14m19.q1k chr08 200 1199 3743 4782 F 1000 93.00 1393 reject_low 32 ALIGNMENT 0 Y12-14m19.p1k chr08 107 303 558795 558794 F 197 0.00 1177 reject_low 23 ALIGNMENT 0 Y12-14m19.q1k chr06 62 201 3050 3049 F 140 0.00 1393 reject_low 28 ALIGNMENT 750 Y12-14m19.q1k chr12 200 1199 9546 10585 F 1000 93.00 1393 reject_low 33 ALIGNMENT 794 Y12-14m19.p1k chr15 56 973 1087359 1088264 F 918 96.62 1177 reject_low 11 ALIGNMENT 0 Y12-14m19.q1k chr13 62 199 3887 3886 F 138 0.00 1393 reject_low 34 ALIGNMENT 797 Y12-14m19.p1k chr14 973 56 2963 3868 C 918 96.73 1177 reject_low 7 ALIGNMENT 0 Y12-14m19.q1k chr16 199 62 944167 944166 C 138 0.00 1393 reject_low 29 ALIGNMENT 0 Y12-14m19.p1k chr13 303 107 3712 3711 C 197 0.00 1177 reject_low 27 ALIGNMENT 1002 Y12-14m19.q1k chr12 1131 39 1065785 1066879 C 1093 98.08 1393 reject_low 12 ALIGNMENT 906 Y12-14m19.q1k chr07 1262 39 1084904 1086168 C 1224 92.48 1393 reject_low 18 ALIGNMENT 561 Y12-14m19.p1k chr16 304 973 944342 944997 F 670 95.97 1177 reject_low 24 ALIGNMENT 821 Y12-14m19.p1k chr09 973 56 3351 4256 C 918 97.60 1177 reject_low 3 ALIGNMENT 906 Y12-14m19.q1k chr16 34 1262 4705 5973 F 1229 92.43 1393 reject_low 17 ALIGNMENT 0 Y12-14m19.p1k chr06 303 107 2873 2872 C 197 0.00 1177 reject_low 21 ALIGNMENT 810 Y12-14m19.q1k chr05 1131 39 570982 572091 C 1093 92.86 1393 reject_low 35 ALIGNMENT 765 Y12-14m19.q1k chr16 1262 200 943062 944166 C 1063 92.10 1393 reject_low 29 ALIGNMENT 0 Y12-14m19.q1k chr12 62 199 4011 4010 F 138 0.00 1393 reject_low 1 ALIGNMENT 0 Y12-14m19.p1k chr08 303 107 3568 3567 C 197 0.00 1177 reject_low 25 ALIGNMENT 957 Y12-14m19.q1k chr09 34 1262 5185 6453 F 1229 93.82 1393 reject_low 13 ALIGNMENT 929 Y12-14m19.q1k chr05 34 1131 4800 5881 F 1098 96.36 1393 reject_low 15 ALIGNMENT 558 Y12-14m19.p1k chr12 973 304 8715 9370 C 670 95.82 1177 reject_low 1 ALIGNMENT 0 Y12-14m19.q1k chr05 1167 1132 570970 570981 C 36 0.00 1393 reject_low 35 ALIGNMENT 0 Y12-14m19.q1k chr02 62 199 4212 4211 F 138 0.00 1393 reject_low 30 ALIGNMENT 26 Y12-14m19.q1k chr05 1262 1168 570868 570969 C 95 78.95 1393 reject_low 35 ALIGNMENT 558 Y12-14m19.p1k chr13 973 304 3056 3711 C 670 95.82 1177 reject_low 27 ALIGNMENT 561 Y12-14m19.p1k chr08 304 973 558795 559450 F 670 95.97 1177 reject_low 23 ALIGNMENT 0 Y12-14m19.q1k chr08 199 62 558620 558619 C 138 0.00 1393 reject_low 31 ALIGNMENT 794 Y12-14m19.p1k chr12 56 973 1067732 1068637 F 918 96.62 1177 accept_tel 0 ALIGNMENT 797 Y12-14m19.p1k chr05 56 973 573023 573928 F 918 96.73 1177 reject_low 5 ALIGNMENT 797 Y12-14m19.p1k chr07 56 973 1087100 1088005 F 918 96.73 1177 reject_low 6 ALIGNMENT 564 Y12-14m19.p1k chr06 973 304 2217 2872 C 670 96.12 1177 reject_low 21 ALIGNMENT 797 Y12-14m19.p1k chr16 973 56 2872 3777 C 918 96.73 1177 reject_low 8 ALIGNMENT 750 Y12-14m19.q1k chr12 200 1199 4011 5050 F 1000 93.00 1393 reject_low 1 ALIGNMENT 0 Y12-14m19.p1k chr12 303 107 9371 9370 C 197 0.00 1177 reject_low 1 ALIGNMENT 903 Y12-14m19.q1k chr15 1199 39 1085227 1086427 C 1161 93.63 1393 reject_low 20 ALIGNMENT 903 Y12-14m19.q1k chr04 1199 39 1526062 1527262 C 1161 93.63 1393 reject_low 19 ALIGNMENT 903 Y12-14m19.q1k chr12 1199 39 1072263 1073463 C 1161 93.63 1393 accept_tel 0 ALIGNMENT 0 Y12-14m19.q1k chr12 62 199 9546 9545 F 138 0.00 1393 reject_low 33 ALIGNMENT 561 Y12-14m19.p1k chr02 973 304 3381 4036 C 670 95.97 1177 reject_low 22 ALIGNMENT 0 Y12-14m19.p1k chr02 303 107 4037 4036 C 197 0.00 1177 reject_low 22 ALIGNMENT 744 Y12-14m19.q1k chr08 1262 200 557512 558619 C 1063 91.53 1393 reject_low 31 ALIGNMENT 770 Y12-14m19.q1k chr06 202 1262 3050 4152 F 1061 92.27 1393 reject_low 28 ALIGNMENT 794 Y12-14m19.p1k chr04 56 973 1528194 1529099 F 918 96.62 1177 reject_low 9 ALIGNMENT 0 Y12-14m19.p1k chr12 303 107 3836 3835 C 197 0.00 1177 reject_low 26 ALIGNMENT 750 Y12-14m19.q1k chr13 200 1199 3887 4926 F 1000 93.00 1393 reject_low 34 ALIGNMENT 957 Y12-14m19.q1k chr10 34 1262 5168 6436 F 1229 93.82 1393 reject_low 14 ALIGNMENT 763 Y12-14m21.p1k chr04 19 895 836402 837268 F 877 96.81 1155 accept 0 ALIGNMENT 1003 Y12-14m21.q1k chr04 1235 48 839247 840437 C 1188 95.79 1353 accept 0 ALIGNMENT 0 Y12-14m22.q1k chr14 815 62 70045 70044 C 754 0.00 1372 reject_low 1 ALIGNMENT 21 Y12-14m22.q1k chr14 836 816 70024 70044 C 21 100.00 1372 reject_low 1 ALIGNMENT 0 Y12-14m22.q1k chr14 907 837 70025 70024 C 71 0.00 1372 reject_low 1 ALIGNMENT 728 Y12-14m22.p1k chr04 915 58 633030 633876 C 858 96.62 1255 accept 0 ALIGNMENT 961 Y12-14m22.q1k chr04 36 1094 629872 630935 F 1059 97.64 1372 accept 0 ALIGNMENT 998 Y12-14m23.q1k chr15 35 1282 334936 336191 F 1248 95.03 1314 accept 0 ALIGNMENT 852 Y12-14m23.p1k chr15 918 5 338943 339850 C 914 98.80 1045 accept 0 ALIGNMENT 670 Y12-14m24.p1k chr12 844 16 462408 463225 C 829 94.45 1034 accept_chi 2 ALIGNMENT 670 Y12-14m24.p1k chr12 844 16 453271 454088 C 829 94.45 1034 accept_chi 1 ALIGNMENT 1026 Y12-14m24.q1k chr07 39 1230 507097 508294 F 1192 96.22 1360 accept_chi 0 ALIGNMENT 816 Y12-14n03.p1k chr12 26 963 686627 687559 F 938 97.33 1071 accept 0 ALIGNMENT 949 Y12-14n03.q1k chr12 1192 39 689382 690552 C 1154 95.58 1386 accept 0 ALIGNMENT 1026 Y12-14n04.q1k chr07 1181 35 499192 500339 C 1147 97.56 1398 accept 0 ALIGNMENT 745 Y12-14n04.p1k chr07 18 939 497043 497952 F 922 95.88 1047 accept 0 ALIGNMENT 491 Y12-14n05.p1k chr13 75 950 173570 174424 F 876 87.33 1255 accept 0 ALIGNMENT 691 Y12-14n05.q1k chr13 966 34 176791 177716 C 933 93.35 1464 accept 0 ALIGNMENT 828 Y12-14n06.q1k chr11 1050 31 422114 423137 C 1020 95.00 1412 accept 0 ALIGNMENT 818 Y12-14n06.p1k chr11 38 964 419137 420049 F 927 97.84 1311 accept 0 ALIGNMENT 856 Y12-14n08.p1k chr16 1036 6 582670 583683 C 1031 95.73 1195 accept 0 ALIGNMENT 876 Y12-14n08.q1k chr16 35 1092 579107 580174 F 1058 95.37 1420 accept 0 ALIGNMENT 947 Y12-14n10.q1k chr13 25 1087 19794 20866 F 1063 97.08 1378 accept 0 ALIGNMENT 848 Y12-14n10.p1k chr13 1074 1 24187 25245 C 1074 94.41 1145 accept 0 ALIGNMENT 651 Y12-14n11.p1k chr14 63 875 443165 443965 F 813 95.45 1284 accept 0 ALIGNMENT 264 Y12-14n11.p1k chr15 717 313 506351 506754 C 405 89.14 1284 reject_low 1 ALIGNMENT 488 Y12-14n11.q1k chr14 707 31 447690 448358 C 677 92.32 1434 accept 0 ALIGNMENT 0 Y12-14n11.p1k chr15 312 167 506755 506754 C 146 0.00 1284 reject_low 1 ALIGNMENT 963 Y12-14n12.q1k chr14 1194 35 326530 327697 C 1160 95.09 1472 accept 0 ALIGNMENT 842 Y12-14n12.p1k chr14 5 952 323480 324414 F 948 97.57 1175 accept 0 ALIGNMENT 897 Y12-14n14.q1k chr15 35 1019 133278 134270 F 985 98.07 1354 accept 0 ALIGNMENT 847 Y12-14n14.p1k chr15 1043 4 137262 138288 C 1040 95.58 1083 accept 0 ALIGNMENT 0 Y12-14n15.q1k chr04 710 881 1154951 1154950 F 172 0.00 1391 reject_low 2 ALIGNMENT 43 Y12-14n15.q1k chr12 676 57 291233 291852 C 620 70.81 1391 reject_low 6 ALIGNMENT 0 Y12-14n15.q1k chr08 62 104 287223 287222 F 43 0.00 1391 reject_low 1 ALIGNMENT 125 Y12-14n15.q1k chr08 105 1033 287223 288153 F 929 72.44 1391 reject_low 1 ALIGNMENT 128 Y12-14n15.q1k chr06 454 96 113515 113873 C 359 79.94 1391 reject_low 3 ALIGNMENT 833 Y12-14n15.p1k chr13 4 997 286811 287793 F 994 96.58 1094 accept 0 ALIGNMENT 0 Y12-14n15.q1k chr08 701 954 291651 291905 F 254 0.00 1391 reject_low 5 ALIGNMENT 131 Y12-14n15.q1k chr08 69 700 291019 291650 F 632 75.00 1391 reject_low 5 ALIGNMENT 0 Y12-14n15.q1k chr12 967 677 290941 291232 C 291 0.00 1391 reject_low 6 ALIGNMENT 136 Y12-14n15.q1k chr04 67 709 1154309 1154951 F 643 74.81 1391 reject_low 2 ALIGNMENT 25 Y12-14n15.q1k chr12 1054 968 290852 290940 C 87 79.31 1391 reject_low 6 ALIGNMENT 0 Y12-14n15.q1k chr08 701 881 295409 295408 F 181 0.00 1391 reject_low 4 ALIGNMENT 994 Y12-14n15.q1k chr13 1170 30 288545 289700 C 1141 96.93 1391 accept 0 ALIGNMENT 0 Y12-14n15.q1k chr06 881 455 113516 113515 C 427 0.00 1391 reject_low 3 ALIGNMENT 0 Y12-14n15.q1k chr06 95 62 113874 113873 C 34 0.00 1391 reject_low 3 ALIGNMENT 85 Y12-14n15.q1k chr08 94 700 294803 295409 F 607 72.49 1391 reject_low 4 ALIGNMENT 32 Y12-14n15.q1k chr08 955 1045 291906 291998 F 91 80.22 1391 reject_low 5 ALIGNMENT 0 Y12-14n15.q1k chr08 62 93 294803 294802 F 32 0.00 1391 reject_low 4 ALIGNMENT 1081 Y12-14n16.q1k chr03 1292 38 93875 95142 C 1255 96.02 1468 accept 0 ALIGNMENT 81 Y12-14n16.p1k chr03 1 166 91478 91627 F 166 89.16 456 accept 0 ALIGNMENT 810 Y12-14n17.p1k chr15 973 4 983204 984157 C 970 96.29 1075 accept 0 ALIGNMENT 1017 Y12-14n17.q1k chr15 36 1200 978577 979745 F 1165 96.22 1433 accept 0 ALIGNMENT 644 Y12-14n18.p1k chr02 43 863 496659 497455 F 821 95.49 1305 accept 0 ALIGNMENT 1003 Y12-14n18.q1k chr02 1199 39 500328 501483 C 1161 96.30 1451 accept 0 ALIGNMENT 403 Y12-14n19.q1k chr07 659 35 308939 309562 C 625 88.96 1414 accept 0 ALIGNMENT 667 Y12-14n19.p1k chr07 49 875 304144 304959 F 827 95.28 1328 accept 0 ALIGNMENT 887 Y12-14n21.q1k chr16 38 1175 390312 391453 F 1138 94.11 1376 accept 0 ALIGNMENT 0 Y12-14n22.q1k chr14 200 924 96609 96608 F 725 0.00 1403 reject_low 17 ALIGNMENT 0 Y12-14n22.q1k chr07 924 413 931174 931173 C 512 0.00 1403 reject_low 16 ALIGNMENT 334 Y12-14n22.q1k chr14 411 41 632121 632491 C 371 98.11 1403 reject_low 14 ALIGNMENT 343 Y12-14n22.q1k chr16 411 41 442739 443109 C 371 98.92 1403 reject_low 11 ALIGNMENT 312 Y12-14n22.q1k chr04 41 412 437146 437516 F 372 96.24 1403 reject_low 15 ALIGNMENT 0 Y12-14n22.q1k chr13 924 420 808528 808527 C 505 0.00 1403 reject_low 2 ALIGNMENT 347 Y12-14n22.q1k chr08 40 411 85534 85905 F 372 99.19 1403 reject_low 7 ALIGNMENT 0 Y12-14n22.q1k chr10 412 924 197834 197833 F 513 0.00 1403 reject_low 5 ALIGNMENT 0 Y12-14n22.q1k chr02 924 412 35849 35848 C 513 0.00 1403 reject_low 1 ALIGNMENT 334 Y12-14n22.q1k chr05 411 35 354356 354732 C 377 97.61 1403 reject_low 3 ALIGNMENT 754 Y12-14n22.p1k chr09 71 968 191205 192088 F 898 96.55 1240 accept 0 ALIGNMENT 145 Y12-14n22.q1k chr14 41 199 96451 96609 F 159 98.11 1403 reject_low 17 ALIGNMENT 1039 Y12-14n22.q1k chr09 1257 40 195798 197021 C 1218 96.31 1403 accept 0 ALIGNMENT 357 Y12-14n22.q1k chr02 411 36 35848 36223 C 376 99.73 1403 reject_low 1 ALIGNMENT 343 Y12-14n22.q1k chr16 411 41 436887 437257 C 371 98.92 1403 reject_low 10 ALIGNMENT 57 Y12-14n22.q1k chr15 327 411 710025 710108 F 85 94.12 1403|3,0 reject_low 19 ALIGNMENT 0 Y12-14n22.q1k chr04 413 924 437516 437515 F 512 0.00 1403 reject_low 15 ALIGNMENT 0 Y12-14n22.q1k chr05 924 412 354357 354356 C 513 0.00 1403 reject_low 3 ALIGNMENT 343 Y12-14n22.q1k chr08 41 411 91387 91757 F 371 98.92 1403 reject_low 9 ALIGNMENT 344 Y12-14n22.q1k chr14 40 411 561607 561978 F 372 98.92 1403 reject_low 8 ALIGNMENT 0 Y12-14n22.q1k chr16 924 412 436888 436887 C 513 0.00 1403 reject_low 10 ALIGNMENT 0 Y12-14n22.q1k chr08 412 924 91757 91756 F 513 0.00 1403 reject_low 9 ALIGNMENT 0 Y12-14n22.q1k chr06 411 924 144518 144517 F 514 0.00 1403 reject_low 18 ALIGNMENT 0 Y12-14n22.q1k chr14 412 924 561978 561977 F 513 0.00 1403 reject_low 8 ALIGNMENT 355 Y12-14n22.q1k chr10 41 411 203319 203689 F 371 100.00 1403 reject_low 6 ALIGNMENT 0 Y12-14n22.q1k chr06 62 216 144325 144324 F 155 0.00 1403 reject_low 18 ALIGNMENT 356 Y12-14n22.q1k chr13 40 411 503769 504140 F 372 100.00 1403 reject_low 4 ALIGNMENT 46 Y12-14n22.q1k chr06 217 410 144325 144518 F 194 77.84 1403 reject_low 18 ALIGNMENT 0 Y12-14n22.q1k chr15 412 924 710108 710107 F 513 0.00 1403 reject_low 19 ALIGNMENT 0 Y12-14n22.q1k chr10 412 924 203689 203688 F 513 0.00 1403 reject_low 6 ALIGNMENT 340 Y12-14n22.q1k chr07 41 411 110859 111229 F 371 98.65 1403 reject_low 12 ALIGNMENT 355 Y12-14n22.q1k chr10 41 411 197464 197834 F 371 100.00 1403 reject_low 5 ALIGNMENT 0 Y12-14n22.q1k chr15 330 329 704062 710027 F 0 0.00 1403 reject_low 19 ALIGNMENT 0 Y12-14n22.q1k chr16 924 412 442740 442739 C 513 0.00 1403 reject_low 11 ALIGNMENT 309 Y12-14n22.q1k chr07 412 41 931173 931543 C 372 95.97 1403 reject_low 16 ALIGNMENT 0 Y12-14n22.q1k chr08 412 924 85905 85904 F 513 0.00 1403 reject_low 7 ALIGNMENT 0 Y12-14n22.q1k chr07 412 924 111229 111228 F 513 0.00 1403 reject_low 12 ALIGNMENT 267 Y12-14n22.q1k chr15 39 331 703771 704063 F 293 98.29 1403|0,2 reject_low 19 ALIGNMENT 329 Y12-14n22.q1k chr13 419 41 808527 808905 C 379 97.36 1403 reject_low 2 ALIGNMENT 337 Y12-14n22.q1k chr02 411 41 643483 643853 C 371 98.38 1403 reject_low 13 ALIGNMENT 0 Y12-14n22.q1k chr13 412 924 504140 504139 F 513 0.00 1403 reject_low 4 ALIGNMENT 0 Y12-14n22.q1k chr14 924 412 632122 632121 C 513 0.00 1403 reject_low 14 ALIGNMENT 0 Y12-14n22.q1k chr02 924 412 643484 643483 C 513 0.00 1403 reject_low 13 ALIGNMENT 724 Y12-14n23.p1k chr14 830 1 638791 639613 C 830 97.59 1045 accept 0 ALIGNMENT 1027 Y12-14n23.q1k chr14 34 1223 634119 635316 F 1190 96.05 1330 accept 0 ALIGNMENT 759 Y12-14n24.p1k chr07 48 921 866504 867361 F 874 97.48 1229 accept 0 ALIGNMENT 892 Y12-14n24.q1k chr07 1175 34 870702 871832 C 1142 95.18 1403 accept 0 ALIGNMENT 1008 Y12-14o01.q1k chr02 31 1183 517783 518949 F 1153 96.88 1311 accept 0 ALIGNMENT 739 Y12-14o01.p1k chr02 902 65 522249 523080 C 838 97.97 1190 accept 0 ALIGNMENT 911 Y12-14o02.q1k chr12 36 1039 454981 455993 F 1004 98.01 1302 accept 0 ALIGNMENT 467 Y12-14o02.p1k chr12 769 100 458703 459357 C 670 92.84 1408 accept 0 ALIGNMENT 467 Y12-14o02.p1k chr12 769 100 467840 468494 C 670 92.84 1408 accept 1 ALIGNMENT 911 Y12-14o02.q1k chr12 36 1039 464118 465130 F 1004 98.01 1302 accept 1 ALIGNMENT 878 Y12-14o03.p1k chr04 1031 2 1404138 1405156 C 1030 97.57 1038 accept 0 ALIGNMENT 866 Y12-14o03.q1k chr04 35 1063 1399742 1400771 F 1029 96.11 1350 accept 0 ALIGNMENT 978 Y12-14o04.q1k chr15 1172 37 584288 585437 C 1136 96.30 1398 accept 0 ALIGNMENT 1004 Y12-14o04.p1k chr15 14 1090 580000 581072 F 1077 98.79 1090 accept 0 ALIGNMENT 910 Y12-14o07.q1k chr13 36 1171 250938 252092 F 1136 94.54 1327 accept 0 ALIGNMENT 804 Y12-14o07.p1k chr13 1033 13 254641 255628 C 1021 95.40 1106 accept 0 ALIGNMENT 1029 Y12-14o08.q1k chr14 36 1215 505389 506585 F 1180 97.20 1380 accept 0 ALIGNMENT 757 Y12-14o08.p1k chr14 934 3 510330 511240 C 932 96.46 1154 accept 0 ALIGNMENT 921 Y12-14o09.p1k chr04 12 1037 366635 367657 F 1026 97.47 1093 accept 0 ALIGNMENT 788 Y12-14o09.q1k chr04 949 33 372123 373040 C 917 96.51 1431 accept 0 ALIGNMENT 1054 Y12-14o10.q1k chr03 37 1259 215060 216289 F 1223 95.83 1481 accept_chi 0 ALIGNMENT 794 Y12-14o10.p1k chr12 987 1 65817 66790 C 987 95.14 1160 accept_chi 1 ALIGNMENT 995 Y12-14o11.q1k chr15 32 1203 544428 545601 F 1172 96.25 1376 accept_chi 0 ALIGNMENT 790 Y12-14o11.p1k chr07 12 976 395097 396046 F 965 96.06 1158 accept_chi 1 ALIGNMENT 26 Y12-14o15.q1k chr16 1208 1157 944288 944344 C 52 86.54 1385 reject_low 14 ALIGNMENT 0 Y12-14o15.q1k chr12 708 1156 9371 9367 F 449 0.00 1385 reject_low 17 ALIGNMENT 1024 Y12-14o15.q1k chr05 1260 36 572695 573944 C 1225 95.35 1385 ambiguous_tel 0 ALIGNMENT 45 Y12-14o15.q1k chr05 1110 1260 4110 4279 F 151 80.79 1385 reject_low 10 ALIGNMENT 1021 Y12-14o15.q1k chr12 1260 36 1074067 1075316 C 1225 95.27 1385 ambiguous_tel 4 ALIGNMENT 989 Y12-14o15.q1k chr05 36 1109 3011 4089 F 1074 97.67 1385 reject_low 10 ALIGNMENT 635 Y12-14o15.q1k chr13 36 707 3040 3711 F 672 98.21 1385 reject_low 18 ALIGNMENT 26 Y12-14o15.q1k chr06 1157 1208 2870 2926 F 52 86.54 1385 reject_low 11 ALIGNMENT 0 Y12-14o15.q1k chr12 708 1156 3836 3832 F 449 0.00 1385 reject_low 16 ALIGNMENT 1018 Y12-14o15.q1k chr15 1250 36 1087042 1088280 C 1215 95.39 1385 ambiguous_tel 5 ALIGNMENT 635 Y12-14o15.q1k chr12 36 707 3164 3835 F 672 98.21 1385 reject_low 16 ALIGNMENT 0 Y12-14o15.q1k chr06 708 1156 2873 2869 F 449 0.00 1385 reject_low 11 ALIGNMENT 1020 Y12-14o15.q1k chr07 1200 36 1086840 1088021 C 1165 96.48 1385 ambiguous_tel 8 ALIGNMENT 0 Y12-14o15.q1k chr08 1156 708 558798 558794 C 449 0.00 1385 reject_low 13 ALIGNMENT 641 Y12-14o15.q1k chr06 36 707 2201 2872 F 672 98.51 1385 reject_low 11 ALIGNMENT 635 Y12-14o15.q1k chr08 36 707 2896 3567 F 672 98.21 1385 reject_low 15 ALIGNMENT 0 Y12-14o15.q1k chr02 708 1156 4037 4033 F 449 0.00 1385 reject_low 12 ALIGNMENT 26 Y12-14o15.q1k chr08 1157 1208 3565 3621 F 52 86.54 1385 reject_low 15 ALIGNMENT 638 Y12-14o15.q1k chr16 707 36 944342 945013 C 672 98.36 1385 reject_low 14 ALIGNMENT 638 Y12-14o15.q1k chr08 707 36 558795 559466 C 672 98.36 1385 reject_low 13 ALIGNMENT 0 Y12-14o15.q1k chr13 708 1156 3712 3708 F 449 0.00 1385 reject_low 18 ALIGNMENT 635 Y12-14o15.q1k chr12 36 707 8699 9370 F 672 98.21 1385 reject_low 17 ALIGNMENT 1050 Y12-14o15.q1k chr10 36 1200 3318 4499 F 1165 97.34 1385 ambiguous_tel 6 ALIGNMENT 26 Y12-14o15.q1k chr02 1157 1208 4034 4090 F 52 86.54 1385 reject_low 12 ALIGNMENT 638 Y12-14o15.q1k chr02 36 707 3365 4036 F 672 98.36 1385 reject_low 12 ALIGNMENT 0 Y12-14o15.q1k chr16 1156 708 944345 944341 C 449 0.00 1385 reject_low 14 ALIGNMENT 23 Y12-14o15.q1k chr13 1157 1208 3709 3765 F 52 84.62 1385 reject_low 18 ALIGNMENT 1047 Y12-14o15.q1k chr09 36 1200 3335 4516 F 1165 97.25 1385 ambiguous_tel 7 ALIGNMENT 1024 Y12-14o15.q1k chr14 36 1260 2947 4196 F 1225 95.35 1385 ambiguous_tel 1 ALIGNMENT 1024 Y12-14o15.q1k chr16 36 1260 2856 4105 F 1225 95.35 1385 ambiguous_tel 2 ALIGNMENT 1021 Y12-14o15.q1k chr04 1260 36 1527866 1529115 C 1225 95.27 1385 ambiguous_tel 3 ALIGNMENT 26 Y12-14o15.q1k chr12 1157 1208 3833 3889 F 52 86.54 1385 reject_low 16 ALIGNMENT 1020 Y12-14o15.q1k chr12 1200 36 1067472 1068653 C 1165 96.48 1385 ambiguous_tel 9 ALIGNMENT 0 Y12-14o15.q1k chr08 708 1156 3568 3564 F 449 0.00 1385 reject_low 15 ALIGNMENT 26 Y12-14o15.q1k chr12 1157 1208 9368 9424 F 52 86.54 1385 reject_low 17 ALIGNMENT 0 Y12-14o15.q1k chr05 1110 1109 4090 4109 F 0 0.00 1385 reject_low 10 ALIGNMENT 26 Y12-14o15.q1k chr08 1208 1157 558741 558797 C 52 86.54 1385 reject_low 13 ALIGNMENT 0 Y12-14o19.q1k chr10 935 62 355374 355373 C 874 0.00 1327 reject_low 3 ALIGNMENT 63 Y12-14o19.q1k chr07 940 1018 828720 828801 F 79 94.94 1327 reject_low 6 ALIGNMENT 750 Y12-14o19.p1k chr13 910 5 135852 136742 C 906 96.36 1020 accept 0 ALIGNMENT 70 Y12-14o19.q1k chr04 1018 936 568877 568962 C 83 96.39 1327 reject_low 2 ALIGNMENT 0 Y12-14o19.q1k chr07 939 62 405553 405552 C 878 0.00 1327 reject_low 5 ALIGNMENT 0 Y12-14o19.q1k chr11 62 943 162488 162487 F 882 0.00 1327 reject_low 7 ALIGNMENT 0 Y12-14o19.q1k chr05 939 62 138746 138745 C 878 0.00 1327 reject_low 9 ALIGNMENT 70 Y12-14o19.q1k chr10 936 1018 374410 374495 F 83 96.39 1327 reject_low 4 ALIGNMENT 61 Y12-14o19.q1k chr11 944 1019 162488 162566 F 76 94.74 1327 reject_low 7 ALIGNMENT 0 Y12-14o19.q1k chr07 947 62 736417 736416 C 886 0.00 1327 reject_low 10 ALIGNMENT 63 Y12-14o19.q1k chr07 1018 940 405471 405552 C 79 94.94 1327 reject_low 5 ALIGNMENT 0 Y12-14o19.q1k chr07 62 939 828720 828719 F 878 0.00 1327 reject_low 6 ALIGNMENT 70 Y12-14o19.q1k chr02 1018 936 405870 405955 C 83 96.39 1327 reject_low 1 ALIGNMENT 939 Y12-14o19.q1k chr13 36 1144 130912 132038 F 1109 96.48 1327 accept 0 ALIGNMENT 0 Y12-14o19.q1k chr10 62 935 374410 374409 F 874 0.00 1327 reject_low 4 ALIGNMENT 60 Y12-14o19.q1k chr13 944 1018 747887 747964 F 75 94.67 1327 reject_low 8 ALIGNMENT 59 Y12-14o19.q1k chr07 1018 948 736343 736416 C 71 95.77 1327 reject_low 10 ALIGNMENT 70 Y12-14o19.q1k chr10 1018 936 355288 355373 C 83 96.39 1327 reject_low 3 ALIGNMENT 0 Y12-14o19.q1k chr04 935 62 568963 568962 C 874 0.00 1327 reject_low 2 ALIGNMENT 0 Y12-14o19.q1k chr02 935 62 405956 405955 C 874 0.00 1327 reject_low 1 ALIGNMENT 58 Y12-14o19.q1k chr05 1016 940 138666 138745 C 77 93.51 1327 reject_low 9 ALIGNMENT 0 Y12-14o19.q1k chr13 62 943 747887 747886 F 882 0.00 1327 reject_low 8 ALIGNMENT 763 Y12-14o21.p1k chr04 7 889 640458 641330 F 883 96.83 958 accept 0 ALIGNMENT 991 Y12-14o21.q1k chr04 1181 33 651849 653000 C 1149 97.13 1339 accept 0 ALIGNMENT 933 Y12-14o22.q1k chr16 1170 36 41890 43043 C 1135 95.77 1331 accept 0 ALIGNMENT 682 Y12-14o22.p1k chr16 1 834 37399 38220 F 834 95.80 1095 accept 0 ALIGNMENT 949 Y12-14o23.q1k chr12 38 1249 467106 468314 F 1212 94.64 1319 reject_low 1 ALIGNMENT 949 Y12-14o23.q1k chr12 38 1249 457969 459177 F 1212 94.64 1319 accept 0 ALIGNMENT 812 Y12-14o23.p1k chr12 878 17 453265 454121 C 862 98.61 1054 reject_low 2 ALIGNMENT 812 Y12-14o23.p1k chr12 878 17 462402 463258 C 862 98.61 1054 accept 0 ALIGNMENT 841 Y12-14p01.p1k chr02 13 975 796684 797634 F 963 97.40 1089 accept 0 ALIGNMENT 863 Y12-14p01.q1k chr02 1214 27 799079 800281 C 1188 92.76 1337 accept 0 ALIGNMENT 0 Y12-14p02.q1k chr07 623 776 11737 11736 F 154 0.00 1368 reject_low 1 ALIGNMENT 435 Y12-14p02.q1k chr07 37 622 11152 11737 F 586 91.81 1368 reject_low 1 ALIGNMENT 983 Y12-14p02.q1k chr15 1205 35 1069030 1070197 C 1171 96.07 1368 accept 0 ALIGNMENT 1066 Y12-14p03.q1k chr15 1263 35 432950 434188 C 1229 96.83 1434 accept 0 ALIGNMENT 930 Y12-14p03.p1k chr15 12 1052 430393 431422 F 1041 98.17 1054 accept 0 ALIGNMENT 344 Y12-14p04.p1k chr08 590 215 85531 85906 C 376 98.67 1117 reject_low 8 ALIGNMENT 0 Y12-14p04.p1k chr02 587 856 36218 36217 F 270 0.00 1117 reject_low 6 ALIGNMENT 0 Y12-14p04.p1k chr09 62 215 196650 196649 F 154 0.00 1117 reject_low 7 ALIGNMENT 0 Y12-14p04.p1k chr13 213 62 504143 504142 C 152 0.00 1117 reject_low 1 ALIGNMENT 329 Y12-14p04.p1k chr13 216 586 808536 808905 F 371 97.84 1117 reject_low 15 ALIGNMENT 0 Y12-14p04.p1k chr04 856 587 437147 437146 C 270 0.00 1117 reject_low 17 ALIGNMENT 352 Y12-14p04.p1k chr02 216 586 35848 36218 F 371 99.73 1117 reject_low 6 ALIGNMENT 0 Y12-14p04.p1k chr08 856 587 91388 91387 C 270 0.00 1117 reject_low 9 ALIGNMENT 0 Y12-14p04.p1k chr02 62 201 643468 643467 F 140 0.00 1117 reject_low 2 ALIGNMENT 353 Y12-14p04.p1k chr10 586 215 197464 197835 C 372 99.73 1117 reject_low 5 ALIGNMENT 0 Y12-14p04.p1k chr09 587 856 197020 197019 F 270 0.00 1117 reject_low 7 ALIGNMENT 0 Y12-14p04.p1k chr02 587 856 643853 643852 F 270 0.00 1117 reject_low 2 ALIGNMENT 338 Y12-14p04.p1k chr14 216 587 632121 632492 F 372 98.39 1117 reject_low 13 ALIGNMENT 149 Y12-14p04.p1k chr14 590 428 96447 96609 C 163 98.16 1117 reject_low 19 ALIGNMENT 0 Y12-14p04.p1k chr14 856 591 561605 561604 C 266 0.00 1117 reject_low 4 ALIGNMENT 943 Y12-14p04.q1k chr08 39 1135 472472 473581 F 1097 97.63 1394 reject_bad_break 0 ALIGNMENT 354 Y12-14p04.p1k chr10 586 213 203319 203692 C 374 99.73 1117 reject_low 3 ALIGNMENT 0 Y12-14p04.p1k chr02 62 215 35848 35847 F 154 0.00 1117 reject_low 6 ALIGNMENT 343 Y12-14p04.p1k chr07 586 216 110859 111229 C 371 98.92 1117 reject_low 11 ALIGNMENT 342 Y12-14p04.p1k chr16 215 588 442738 443111 F 374 98.66 1117 reject_low 10 ALIGNMENT 0 Y12-14p04.p1k chr15 295 62 704064 704063 C 234 0.00 1117 reject_low 18 ALIGNMENT 0 Y12-14p04.p1k chr07 856 587 110860 110859 C 270 0.00 1117 reject_low 11 ALIGNMENT 0 Y12-14p04.p1k chr16 62 214 442738 442737 F 153 0.00 1117 reject_low 10 ALIGNMENT 0 Y12-14p04.p1k chr08 214 62 85907 85906 C 153 0.00 1117 reject_low 8 ALIGNMENT 0 Y12-14p04.p1k chr10 212 62 203693 203692 C 151 0.00 1117 reject_low 3 ALIGNMENT 0 Y12-14p04.p1k chr14 62 215 632121 632120 F 154 0.00 1117 reject_low 13 ALIGNMENT 0 Y12-14p04.p1k chr07 215 62 111230 111229 C 154 0.00 1117 reject_low 11 ALIGNMENT 352 Y12-14p04.p1k chr09 216 586 196650 197020 F 371 99.73 1117 reject_low 7 ALIGNMENT 314 Y12-14p04.p1k chr04 586 216 437146 437515 C 371 96.50 1117 reject_low 17 ALIGNMENT 0 Y12-14p04.p1k chr07 62 215 931174 931173 F 154 0.00 1117 reject_low 16 ALIGNMENT 268 Y12-14p04.p1k chr15 586 296 703773 704063 C 291 98.63 1117 reject_low 18 ALIGNMENT 0 Y12-14p04.p1k chr16 62 214 436886 436885 F 153 0.00 1117 reject_low 12 ALIGNMENT 0 Y12-14p04.p1k chr04 215 62 437516 437515 C 154 0.00 1117 reject_low 17 ALIGNMENT 0 Y12-14p04.p1k chr13 62 215 808536 808535 F 154 0.00 1117 reject_low 15 ALIGNMENT 0 Y12-14p04.p1k chr08 856 591 85532 85531 C 266 0.00 1117 reject_low 8 ALIGNMENT 0 Y12-14p04.p1k chr08 211 62 91762 91761 C 150 0.00 1117 reject_low 9 ALIGNMENT 0 Y12-14p04.p1k chr10 856 587 203320 203319 C 270 0.00 1117 reject_low 3 ALIGNMENT 336 Y12-14p04.p1k chr02 202 586 643468 643853 F 385 97.40 1117 reject_low 2 ALIGNMENT 313 Y12-14p04.p1k chr07 216 588 931174 931545 F 373 96.25 1117 reject_low 16 ALIGNMENT 178 Y12-14p04.p1k chr08 216 19 475947 476145 C 198 98.48 1117 reject_bad_break 0 ALIGNMENT 0 Y12-14p04.p1k chr07 589 856 931545 931544 F 268 0.00 1117 reject_low 16 ALIGNMENT 0 Y12-14p04.p1k chr08 586 217 475949 475946 C 370 0.00 1117 reject_bad_break 0 ALIGNMENT 341 Y12-14p04.p1k chr16 215 586 436886 437257 F 372 98.66 1117 reject_low 12 ALIGNMENT 0 Y12-14p04.p1k chr16 587 856 437257 437256 F 270 0.00 1117 reject_low 12 ALIGNMENT 334 Y12-14p04.p1k chr05 216 586 354356 354726 F 371 98.11 1117 reject_low 14 ALIGNMENT 0 Y12-14p04.p1k chr14 856 591 96448 96447 C 266 0.00 1117 reject_low 19 ALIGNMENT 0 Y12-14p04.p1k chr13 856 599 503760 503759 C 258 0.00 1117 reject_low 1 ALIGNMENT 0 Y12-14p04.p1k chr15 856 587 703774 703773 C 270 0.00 1117 reject_low 18 ALIGNMENT 0 Y12-14p04.p1k chr14 211 62 561983 561982 C 150 0.00 1117 reject_low 4 ALIGNMENT 352 Y12-14p04.p1k chr13 598 214 503759 504142 C 385 98.96 1117 reject_low 1 ALIGNMENT 0 Y12-14p04.p1k chr10 214 62 197836 197835 C 153 0.00 1117 reject_low 5 ALIGNMENT 375 Y12-14p04.p1k chr08 1041 587 475501 475948 C 455 96.48 1117 reject_bad_break 0 ALIGNMENT 340 Y12-14p04.p1k chr08 586 212 91387 91761 C 375 98.40 1117 reject_low 9 ALIGNMENT 0 Y12-14p04.p1k chr14 427 62 96610 96609 C 366 0.00 1117 reject_low 19 ALIGNMENT 340 Y12-14p04.p1k chr14 590 212 561604 561982 C 379 98.15 1117 reject_low 4 ALIGNMENT 0 Y12-14p04.p1k chr10 856 587 197465 197464 C 270 0.00 1117 reject_low 5 ALIGNMENT 0 Y12-14p04.p1k chr05 62 215 354356 354355 F 154 0.00 1117 reject_low 14 ALIGNMENT 0 Y12-14p04.p1k chr14 588 856 632492 632491 F 269 0.00 1117 reject_low 13 ALIGNMENT 0 Y12-14p04.p1k chr05 587 856 354726 354725 F 270 0.00 1117 reject_low 14 ALIGNMENT 0 Y12-14p04.p1k chr16 589 856 443111 443110 F 268 0.00 1117 reject_low 10 ALIGNMENT 0 Y12-14p04.p1k chr13 587 856 808905 808904 F 270 0.00 1117 reject_low 15 ALIGNMENT 746 Y12-14p05.p1k chr16 861 4 680974 681822 C 858 97.09 1091 accept 0 ALIGNMENT 982 Y12-14p05.q1k chr16 36 1159 677763 678881 F 1124 96.44 1426 accept 0 ALIGNMENT 910 Y12-14p06.p1k chr07 1080 11 463822 464876 C 1070 96.92 1163 accept 0 ALIGNMENT 1009 Y12-14p06.q1k chr07 34 1208 458867 460026 F 1175 96.85 1441 accept 0 ALIGNMENT 928 Y12-14p08.p1k chr16 1 1049 425490 426525 F 1049 97.43 1143 accept 0 ALIGNMENT 917 Y12-14p08.q1k chr16 1084 36 430664 431728 C 1049 97.33 1333 accept 0 ALIGNMENT 949 Y12-14p09.q1k chr03 37 1180 25775 26915 F 1144 95.72 1469 accept 0 ALIGNMENT 834 Y12-14p09.p1k chr03 993 4 29462 30448 C 990 96.97 1152 accept 0 ALIGNMENT 877 Y12-14p10.q1k chr04 38 1070 553465 554515 F 1033 96.13 1361 accept 0 ALIGNMENT 834 Y12-14p10.p1k chr04 909 2 556762 557662 C 908 98.46 1261 accept 0 ALIGNMENT 973 Y12-14p13.p1k chr04 1186 15 1382334 1383499 C 1172 95.48 1204 accept 0 ALIGNMENT 927 Y12-14p13.q1k chr04 25 1077 1378906 1379962 F 1053 97.44 1392 accept 0 ALIGNMENT 575 Y12-14p14.q1k chr08 962 35 240947 241876 C 928 88.79 1357 accept 0 ALIGNMENT 899 Y12-14p15.p1k chr09 2 1080 241053 242135 F 1079 94.90 1220 accept 0 ALIGNMENT 1032 Y12-14p15.q1k chr09 1258 36 244637 245875 C 1223 95.83 1421 accept 0 ALIGNMENT 824 Y12-14p16.q1k chr02 1156 38 263824 264958 C 1119 93.21 1399 ambiguous_trans 7 ALIGNMENT 641 Y12-14p16.q1k chr04 1156 38 1100013 1101147 C 1119 87.85 1399 reject_low 12 ALIGNMENT 827 Y12-14p16.q1k chr15 1156 38 599066 600200 C 1119 93.30 1399 ambiguous_trans 6 ALIGNMENT 624 Y12-14p16.q1k chr05 46 1156 443940 445066 F 1111 87.49 1399 reject_low 17 ALIGNMENT 791 Y12-14p16.q1k chr12 38 1156 215621 216755 F 1119 92.31 1399 ambiguous_trans_ua 10 ALIGNMENT 929 Y12-14p16.q1k chr13 38 1156 357538 358672 F 1119 96.34 1399 ambiguous_trans 1 ALIGNMENT 935 Y12-14p16.q1k chr02 1156 38 225287 226421 C 1119 96.51 1399 ambiguous_trans 0 ALIGNMENT 920 Y12-14p16.q1k chr07 1156 38 540015 541149 C 1119 96.07 1399 ambiguous_trans 2 ALIGNMENT 911 Y12-14p16.q1k chr10 1156 38 482212 483346 C 1119 95.80 1399 ambiguous_trans 3 ALIGNMENT 624 Y12-14p16.q1k chr13 1156 46 200582 201708 C 1111 87.49 1399 reject_low 18 ALIGNMENT 626 Y12-14p16.q1k chr01 46 1127 160786 161879 F 1082 87.99 1399 reject_low 20 ALIGNMENT 794 Y12-14p16.q1k chr05 38 1156 493031 494165 F 1119 92.40 1399 ambiguous_trans 8 ALIGNMENT 641 Y12-14p16.q1k chr13 1156 38 188415 189549 C 1119 87.85 1399 reject_low 13 ALIGNMENT 574 Y12-14p16.q1k chr12 1156 249 655075 655998 C 908 89.76 1399 reject_low 22 ALIGNMENT 641 Y12-14p16.q1k chr16 1156 38 848662 849796 C 1119 87.85 1399 reject_low 14 ALIGNMENT 0 Y12-14p16.q1k chr12 248 62 655999 655998 C 187 0.00 1399 reject_low 22 ALIGNMENT 0 Y12-14p16.q1k chr16 62 78 805218 805217 F 17 0.00 1399 reject_low 23 ALIGNMENT 624 Y12-14p16.q1k chr15 1156 46 121953 123079 C 1111 87.49 1399 reject_low 19 ALIGNMENT 599 Y12-14p16.q1k chr10 1127 46 476661 477754 C 1082 87.15 1399 reject_low 21 ALIGNMENT 545 Y12-14p16.q1k chr16 79 1127 805218 806278 F 1049 85.99 1399 reject_low 23 ALIGNMENT 654 Y12-14p16.q1k chr04 1156 46 1210941 1212067 C 1111 88.30 1399 reject_low 11 ALIGNMENT 902 Y12-14p16.q1k chr14 38 1156 97144 98278 F 1119 95.53 1399 ambiguous_trans 4 ALIGNMENT 827 Y12-14p16.q1k chr07 38 1156 817932 819066 F 1119 93.30 1399 ambiguous_trans 5 ALIGNMENT 638 Y12-14p16.q1k chr08 38 1156 544144 545278 F 1119 87.76 1399 reject_low 15 ALIGNMENT 642 Y12-14p16.q1k chr16 38 1127 851165 852266 F 1090 88.35 1399 reject_low 16 ALIGNMENT 794 Y12-14p16.q1k chr13 38 1156 373236 374370 F 1119 92.40 1399 ambiguous_trans 9 ALIGNMENT 0 Y12-14p17.p1k chr04 723 446 1524557 1524556 C 278 0.00 1170 reject_low 16 ALIGNMENT 0 Y12-14p17.p1k chr07 446 723 833 832 F 278 0.00 1170 reject_low 17 ALIGNMENT 279 Y12-14p17.p1k chr15 445 9 1083866 1084303 C 437 90.62 1170 reject_low 15 ALIGNMENT 0 Y12-14p17.p1k chr16 446 723 7275 7274 F 278 0.00 1170 reject_low 12 ALIGNMENT 467 Y12-14p17.p1k chr10 757 9 744454 745202 C 749 89.59 1170 reject_low 4 ALIGNMENT 0 Y12-14p17.p1k chr10 446 723 7819 7818 F 278 0.00 1170 reject_low 14 ALIGNMENT 0 Y12-14p17.p1k chr03 723 446 315728 315727 C 278 0.00 1170 reject_low 10 ALIGNMENT 969 Y12-14p17.q1k chr08 1234 35 9707 10916 C 1200 94.83 1376 accept 0 ALIGNMENT 0 Y12-14p17.p1k chr12 446 723 12137 12136 F 278 0.00 1170 reject_low 18 ALIGNMENT 448 Y12-14p17.p1k chr08 9 774 5113 5883 F 766 88.25 1170 accept 0 ALIGNMENT 0 Y12-14p17.p1k chr15 723 446 1083867 1083866 C 278 0.00 1170 reject_low 15 ALIGNMENT 253 Y12-14p17.p1k chr12 9 445 11700 12137 F 437 89.02 1170 reject_low 18 ALIGNMENT 0 Y12-14p17.p1k chr03 446 723 1149 1148 F 278 0.00 1170 reject_low 20 ALIGNMENT 234 Y12-14p17.p1k chr03 9 445 714 1149 F 437 87.41 1170 reject_low 20 ALIGNMENT 0 Y12-14p17.p1k chr05 723 446 569544 569543 C 278 0.00 1170 reject_low 11 ALIGNMENT 283 Y12-14p17.p1k chr16 9 445 6838 7275 F 437 90.85 1170 reject_low 12 ALIGNMENT 264 Y12-14p17.p1k chr07 9 445 392 833 F 437 89.24 1170 reject_low 17 ALIGNMENT 242 Y12-14p17.p1k chr13 397 9 923535 923924 C 389 90.23 1170 reject_low 19 ALIGNMENT 522 Y12-14p17.p1k chr06 9 853 5143 5981 F 845 89.70 1170 reject_low 2 ALIGNMENT 21 Y12-14p17.p1k chr07 853 799 1083179 1083227 C 55 87.27 1170 reject_low 8 ALIGNMENT 0 Y12-14p17.p1k chr05 62 301 6379 6378 F 240 0.00 1170 reject_low 9 ALIGNMENT 445 Y12-14p17.p1k chr13 1 757 5950 6704 F 757 88.51 1170 reject_low 5 ALIGNMENT 482 Y12-14p17.p1k chr07 772 9 1083262 1084024 C 764 89.92 1170 reject_low 8 ALIGNMENT 535 Y12-14p17.p1k chr09 854 9 438606 439456 C 846 90.19 1170 reject_low 1 ALIGNMENT 0 Y12-14p17.p1k chr13 723 398 923536 923535 C 326 0.00 1170 reject_low 19 ALIGNMENT 458 Y12-14p17.p1k chr04 1 757 510 1267 F 757 88.90 1170 reject_low 3 ALIGNMENT 444 Y12-14p17.p1k chr02 757 1 812013 812767 C 757 88.64 1170 reject_low 6 ALIGNMENT 0 Y12-14p17.p1k chr09 446 723 7836 7835 F 278 0.00 1170 reject_low 13 ALIGNMENT 305 Y12-14p17.p1k chr05 445 9 569543 569981 C 437 92.22 1170 reject_low 11 ALIGNMENT 0 Y12-14p17.p1k chr07 798 773 1083228 1083261 C 26 0.00 1170 reject_low 8 ALIGNMENT 436 Y12-14p17.p1k chr14 9 757 7038 7791 F 749 88.25 1170 reject_low 7 ALIGNMENT 272 Y12-14p17.p1k chr04 445 9 1524556 1524998 C 437 89.93 1170 reject_low 16 ALIGNMENT 281 Y12-14p17.p1k chr05 302 711 6379 6791 F 410 91.71 1170 reject_low 9 ALIGNMENT 279 Y12-14p17.p1k chr10 9 445 7379 7819 F 437 90.85 1170 reject_low 14 ALIGNMENT 279 Y12-14p17.p1k chr09 9 445 7396 7836 F 437 90.85 1170 reject_low 13 ALIGNMENT 298 Y12-14p17.p1k chr03 445 1 315727 316172 C 445 91.69 1170 reject_low 10 ALIGNMENT 923 Y12-14p18.q1k chr04 1113 36 510106 511198 C 1078 97.12 1350 accept 0 ALIGNMENT 794 Y12-14p18.p1k chr04 4 991 505207 506186 F 988 95.55 1122 accept 0 ALIGNMENT 325 Y12-14p20.p1k chr13 663 107 591103 591649 C 557 87.43 1367 accept 0 ALIGNMENT 0 Y12-14p21.p1k chr13 758 775 239387 239386 F 18 0.00 1093 reject_low 1 ALIGNMENT 798 Y12-14p21.p1k chr06 12 918 103208 104102 F 907 97.68 1093 accept 0 ALIGNMENT 950 Y12-14p21.q1k chr06 1144 29 107968 109098 C 1116 96.59 1329 accept 0 ALIGNMENT 20 Y12-14p21.p1k chr13 723 757 239353 239387 F 35 97.14 1093 reject_low 1 ALIGNMENT 0 Y12-14p21.p1k chr13 62 722 239353 239352 F 661 0.00 1093 reject_low 1 ALIGNMENT 972 Y12-14p22.q1k chr11 1172 29 120485 121631 C 1144 96.68 1339 accept 0 ALIGNMENT 811 Y12-14p22.p1k chr11 15 922 115814 116713 F 908 97.69 1159 accept 0 ALIGNMENT 786 Y12-14p23.p1k chr12 13 908 746702 747589 F 896 98.21 1089 accept 0 ALIGNMENT 1003 Y12-14p23.q1k chr12 1251 40 749788 751012 C 1212 96.86 1364 accept 0 ALIGNMENT 897 Y12-14p24.p1k chr04 1052 12 947315 948349 C 1041 96.73 1077 accept 0 ALIGNMENT 1034 Y12-14p24.q1k chr04 34 1254 942810 944044 F 1221 96.15 1327 accept 0 ALIGNMENT 503 Y12-15a02.p1k chr13 879 163 130829 131536 C 717 91.49 1465 accept 0 ALIGNMENT 479 Y12-15a03.q1k chr04 548 34 353252 353766 C 515 98.45 1267 reject_bad_break 0 ALIGNMENT 0 Y12-15a03.p1k chr04 1096 1095 351011 350996 F 0 0.00 1226 reject_bad_break 0 ALIGNMENT 30 Y12-15a03.p1k chr04 1096 1219 350997 351135 F 124 79.03 1226 reject_bad_break 0 ALIGNMENT 927 Y12-15a03.p1k chr04 20 1095 349929 351010 F 1076 97.58 1226 reject_bad_break 0 ALIGNMENT 835 Y12-15a04.q1k chr01 1094 31 6419 7467 C 1064 95.49 1382 accept_chi 0 ALIGNMENT 73 Y12-15a04.p1k chr02 435 213 400326 400541 C 223 79.82 1494 reject_low 2 ALIGNMENT 201 Y12-15a04.p1k chr13 848 431 130932 131346 C 418 84.21 1494 accept_chi 1 ALIGNMENT 426 Y12-15a05.p1k chr16 273 1062 600631 601413 F 790 85.82 1304 accept 0 ALIGNMENT 635 Y12-15a05.q1k chr16 1061 34 603450 604480 C 1028 88.23 1323 accept 0 ALIGNMENT 890 Y12-15a06.q1k chr07 34 1029 464351 465346 F 996 97.79 1353 accept_chi 0 ALIGNMENT 350 Y12-15a06.p1k chr02 6 441 156280 156710 F 436 94.95 1266 manual 1 ALIGNMENT 0 Y12-15a06.p1k chr15 448 62 1009101 1009100 C 387 0.00 1266 manual 2 ALIGNMENT 279 Y12-15a06.p1k chr15 1020 449 1008542 1009100 C 572 85.49 1266 manual 2 ALIGNMENT 872 Y12-15a07.p1k chr11 1028 19 344417 345408 C 1010 97.03 1319 accept 0 ALIGNMENT 866 Y12-15a07.q1k chr11 32 1091 340946 341995 F 1060 95.00 1330 accept 0 ALIGNMENT 944 Y12-15a08.q1k chr15 42 1235 1003376 1004585 F 1194 94.97 1331 accept 0 ALIGNMENT 993 Y12-15a08.p1k chr15 1208 26 1008388 1009586 C 1183 95.27 1290 accept 0 ALIGNMENT 594 Y12-15a09.p1k chr13 646 3 380335 380979 C 644 98.60 1276 accept_trans 0 ALIGNMENT 779 Y12-15a09.q1k chr13 32 896 370162 371024 F 865 98.15 1401 accept_trans 0 ALIGNMENT 908 Y12-15a10.q1k chr04 1040 36 558340 559343 C 1005 97.91 1378 accept 0 ALIGNMENT 885 Y12-15a10.p1k chr04 17 982 555290 556257 F 966 98.03 1218 accept 0 ALIGNMENT 1039 Y12-15a11.p1k chr09 24 1225 36432 37642 F 1202 96.26 1239 accept 0 ALIGNMENT 752 Y12-15a11.q1k chr09 885 37 39603 40450 C 849 97.64 1330 accept 0 ALIGNMENT 947 Y12-15a12.p1k chr10 1214 18 172323 173538 C 1197 94.65 1225 accept 0 ALIGNMENT 1031 Y12-15a12.q1k chr10 30 1230 167916 169133 F 1201 96.34 1312 accept 0 ALIGNMENT 999 Y12-15a13.q1k chr15 29 1216 792759 793954 F 1188 95.96 1300 accept 0 ALIGNMENT 1033 Y12-15a13.p1k chr15 1223 22 795705 796907 C 1202 95.67 1226 accept 0 ALIGNMENT 0 Y12-15a14.q1k chr08 62 247 365423 365422 F 186 0.00 1306 reject_low 2 ALIGNMENT 21 Y12-15a14.q1k chr16 253 321 187342 187410 F 69 84.06 1306 reject_low 1 ALIGNMENT 0 Y12-15a14.q1k chr16 62 252 187342 187341 F 191 0.00 1306 reject_low 1 ALIGNMENT 27 Y12-15a14.q1k chr08 250 287 365392 365429 F 38 92.11 1306 reject_low 3 ALIGNMENT 0 Y12-15a14.q1k chr08 288 838 365429 365428 F 551 0.00 1306 reject_low 3 ALIGNMENT 0 Y12-15a14.q1k chr08 288 838 365462 365461 F 551 0.00 1306 reject_low 2 ALIGNMENT 29 Y12-15a14.q1k chr08 248 287 365423 365462 F 40 92.50 1306 reject_low 2 ALIGNMENT 967 Y12-15a14.p1k chr12 1204 19 588952 590149 C 1186 95.28 1226 accept 0 ALIGNMENT 0 Y12-15a14.q1k chr08 62 249 365392 365391 F 188 0.00 1306 reject_low 3 ALIGNMENT 0 Y12-15a14.q1k chr16 322 838 187410 187409 F 517 0.00 1306 reject_low 1 ALIGNMENT 788 Y12-15a14.q1k chr12 38 956 584838 585759 F 919 97.50 1306 accept 0 ALIGNMENT 1068 Y12-15a15.q1k chr11 1279 35 581538 582786 C 1245 96.06 1322 accept 0 ALIGNMENT 1011 Y12-15a15.p1k chr11 24 1197 577090 578266 F 1174 95.91 1207 accept 0 ALIGNMENT 32 Y12-15a16.p1k chr12 1070 832 589066 589296 C 239 75.31 1233 reject_low 1 ALIGNMENT 701 Y12-15a16.p1k chr05 794 1 200384 201175 C 794 97.36 1233 accept 0 ALIGNMENT 0 Y12-15a16.p1k chr12 831 62 589297 589296 C 770 0.00 1233 reject_low 1 ALIGNMENT 909 Y12-15a16.q1k chr05 35 1172 196500 197639 F 1138 94.64 1333 accept 0 ALIGNMENT 869 Y12-15a17.q1k chr02 965 32 243399 244329 C 934 98.50 1321 accept 0 ALIGNMENT 114 Y12-15a17.p1k chr04 33 439 451703 452109 F 407 76.90 1231 reject_low 1 ALIGNMENT 0 Y12-15a17.p1k chr04 440 703 452109 452108 F 264 0.00 1231 reject_low 1 ALIGNMENT 811 Y12-15a17.p1k chr02 17 923 240413 241316 F 907 97.57 1231 accept 0 ALIGNMENT 827 Y12-15a18.p1k chr16 18 930 926187 927099 F 913 97.92 1246 accept 0 ALIGNMENT 901 Y12-15a18.q1k chr16 1109 35 930701 931769 C 1075 95.72 1315 accept 0 ALIGNMENT 0 Y12-15a19.p1k chr15 623 730 23541 23648 F 108 0.00 1242 reject_low 3 ALIGNMENT 0 Y12-15a19.p1k chr09 373 544 17545 17722 F 172 0.00 1242 reject_low 4 ALIGNMENT 25 Y12-15a19.p1k chr15 548 622 23466 23540 F 75 80.00 1242 reject_low 3 ALIGNMENT 0 Y12-15a19.q1k chr07 136 791 1071711 1071710 F 656 0.00 1289 reject_low 1 ALIGNMENT 145 Y12-15a19.p1k chr09 731 1175 17909 18349 F 445 76.63 1242 reject_low 4 ALIGNMENT 0 Y12-15a19.p1k chr07 62 133 1067750 1067749 F 72 0.00 1242 reject_low 2 ALIGNMENT 152 Y12-15a19.p1k chr15 731 1175 23649 24089 F 445 77.08 1242 reject_low 3 ALIGNMENT 696 Y12-15a19.q1k chr02 46 973 801825 802747 F 928 93.86 1289 accept 0 ALIGNMENT 27 Y12-15a19.p1k chr09 545 622 17723 17800 F 78 80.77 1242 reject_low 4 ALIGNMENT 0 Y12-15a19.p1k chr07 375 666 1067991 1068288 F 292 0.00 1242 reject_low 2 ALIGNMENT 173 Y12-15a19.p1k chr07 667 1175 1068289 1068793 F 509 77.41 1242 reject_low 2 ALIGNMENT 1038 Y12-15a19.p1k chr07 1214 15 1076767 1077962 C 1200 95.58 1242 reject_low 1 ALIGNMENT 64 Y12-15a19.p1k chr07 134 374 1067750 1067990 F 241 75.93 1242 reject_low 2 ALIGNMENT 0 Y12-15a19.p1k chr09 623 730 17801 17908 F 108 0.00 1242 reject_low 4 ALIGNMENT 1038 Y12-15a19.p1k chr02 1214 15 805507 806702 C 1200 95.67 1242 accept 0 ALIGNMENT 49 Y12-15a19.p1k chr09 28 372 17202 17544 F 345 72.46 1242 reject_low 4 ALIGNMENT 39 Y12-15a19.q1k chr07 43 135 1071619 1071711 F 93 81.72 1289 reject_low 1 ALIGNMENT 0 Y12-15a19.p1k chr15 62 547 23466 23465 F 486 0.00 1242 reject_low 3 ALIGNMENT 0 Y12-15a21.q1k chr11 62 231 220395 220394 F 170 0.00 1239 reject_low 1 ALIGNMENT 0 Y12-15a21.q1k chr11 62 177 220449 220448 F 116 0.00 1239 reject_low 2 ALIGNMENT 986 Y12-15a21.p1k chr11 1149 21 223446 224585 C 1129 96.90 1150 accept 0 ALIGNMENT 31 Y12-15a21.q1k chr11 232 276 220395 220439 F 45 91.11 1239 reject_low 1 ALIGNMENT 0 Y12-15a21.q1k chr10 235 616 400073 400072 F 382 0.00 1239 reject_low 3 ALIGNMENT 0 Y12-15a21.q1k chr10 62 206 400163 400162 F 145 0.00 1239 reject_low 4 ALIGNMENT 0 Y12-15a21.q1k chr10 235 616 400190 400189 F 382 0.00 1239 reject_low 4 ALIGNMENT 599 Y12-15a21.q1k chr11 35 739 220254 220955 F 705 96.74 1239 accept 0 ALIGNMENT 20 Y12-15a21.q1k chr10 207 234 400163 400190 F 28 96.43 1239 reject_low 4 ALIGNMENT 23 Y12-15a21.q1k chr10 203 234 400042 400073 F 32 96.88 1239 reject_low 3 ALIGNMENT 0 Y12-15a21.q1k chr10 62 202 400042 400041 F 141 0.00 1239 reject_low 3 ALIGNMENT 0 Y12-15a21.q1k chr11 277 616 220439 220438 F 340 0.00 1239 reject_low 1 ALIGNMENT 30 Y12-15a21.q1k chr11 178 222 220449 220493 F 45 91.11 1239 reject_low 2 ALIGNMENT 0 Y12-15a21.q1k chr11 223 616 220493 220492 F 394 0.00 1239 reject_low 2 ALIGNMENT 1009 Y12-15a22.q1k chr04 42 1232 959586 960777 F 1191 95.89 1232 accept 0 ALIGNMENT 1006 Y12-15a22.p1k chr04 1156 15 964188 965329 C 1142 97.72 1163 accept 0 ALIGNMENT 962 Y12-15a24.p1k chr16 1138 26 136412 137530 C 1113 95.96 1138 accept 0 ALIGNMENT 1000 Y12-15a24.q1k chr16 34 1155 132541 133665 F 1122 96.88 1189 accept 0 ALIGNMENT 102 Y12-15b01.q1k chr12 34 306 460821 461093 F 273 79.85 1408 accept 0 ALIGNMENT 983 Y12-15b01.p1k chr12 1137 22 454760 455876 C 1116 97.13 1226 reject_low 1 ALIGNMENT 983 Y12-15b01.p1k chr12 1137 22 463897 465013 C 1116 97.13 1226 accept 0 ALIGNMENT 980 Y12-15b03.p1k chr02 15 1213 122919 124110 F 1199 95.41 1231 accept 0 ALIGNMENT 1064 Y12-15b03.q1k chr02 1287 36 126794 128054 C 1252 96.17 1353 accept 0 ALIGNMENT 0 Y12-15b04.p1k chr10 786 62 414958 414957 C 725 0.00 1210 reject_low 2 ALIGNMENT 0 Y12-15b04.p1k chr11 790 62 202718 202717 C 729 0.00 1210 reject_low 12 ALIGNMENT 0 Y12-15b04.p1k chr07 62 789 185719 185718 F 728 0.00 1210 reject_low 5 ALIGNMENT 74 Y12-15b04.p1k chr03 791 876 151281 151366 F 86 95.35 1210 reject_low 1 ALIGNMENT 71 Y12-15b04.p1k chr05 791 864 435748 435821 F 74 98.65 1210 reject_low 11 ALIGNMENT 959 Y12-15b04.p1k chr04 1209 15 1201389 1202590 C 1195 95.23 1210 accept 0 ALIGNMENT 72 Y12-15b04.p1k chr16 868 791 582054 582131 C 78 97.44 1210 reject_low 10 ALIGNMENT 0 Y12-15b04.p1k chr07 789 62 122347 122346 C 728 0.00 1210 reject_low 7 ALIGNMENT 75 Y12-15b04.p1k chr13 791 871 480620 480700 F 81 97.53 1210 reject_low 3 ALIGNMENT 74 Y12-15b04.p1k chr07 867 791 876395 876471 C 77 98.70 1210 reject_low 6 ALIGNMENT 972 Y12-15b04.q1k chr04 27 1189 1196333 1197505 F 1163 95.79 1298 accept 0 ALIGNMENT 0 Y12-15b04.p1k chr07 790 62 876472 876471 C 729 0.00 1210 reject_low 6 ALIGNMENT 72 Y12-15b04.p1k chr05 791 868 135425 135502 F 78 97.44 1210 reject_low 9 ALIGNMENT 76 Y12-15b04.p1k chr10 865 787 414879 414957 C 79 98.73 1210 reject_low 2 ALIGNMENT 0 Y12-15b04.p1k chr06 62 790 226676 226675 F 729 0.00 1210 reject_low 13 ALIGNMENT 0 Y12-15b04.p1k chr05 62 790 435748 435747 F 729 0.00 1210 reject_low 11 ALIGNMENT 0 Y12-15b04.p1k chr04 62 789 1352455 1352454 F 728 0.00 1210 reject_low 4 ALIGNMENT 76 Y12-15b04.p1k chr04 790 868 1352455 1352533 F 79 98.73 1210 reject_low 4 ALIGNMENT 0 Y12-15b04.p1k chr16 790 62 582132 582131 C 729 0.00 1210 reject_low 10 ALIGNMENT 0 Y12-15b04.p1k chr13 62 790 480620 480619 F 729 0.00 1210 reject_low 3 ALIGNMENT 71 Y12-15b04.p1k chr11 864 791 202644 202717 C 74 98.65 1210 reject_low 12 ALIGNMENT 73 Y12-15b04.p1k chr07 865 790 122271 122346 C 76 98.68 1210 reject_low 7 ALIGNMENT 0 Y12-15b04.p1k chr03 62 790 151281 151280 F 729 0.00 1210 reject_low 1 ALIGNMENT 76 Y12-15b04.p1k chr07 790 868 185719 185797 F 79 98.73 1210 reject_low 5 ALIGNMENT 65 Y12-15b04.p1k chr06 791 863 226676 226747 F 73 97.26 1210 reject_low 13 ALIGNMENT 0 Y12-15b04.p1k chr09 62 789 300226 300225 F 728 0.00 1210 reject_low 8 ALIGNMENT 71 Y12-15b04.p1k chr09 790 868 300226 300303 F 79 97.47 1210 reject_low 8 ALIGNMENT 0 Y12-15b04.p1k chr05 62 790 135425 135424 F 729 0.00 1210 reject_low 9 ALIGNMENT 932 Y12-15b05.q1k chr11 34 1129 252165 253274 F 1096 97.08 1328 accept 0 ALIGNMENT 1067 Y12-15b05.p1k chr11 1237 20 255842 257056 C 1218 96.31 1248 accept 0 ALIGNMENT 1004 Y12-15b06.p1k chr10 14 1234 57085 58296 F 1221 95.50 1235 accept 0 ALIGNMENT 999 Y12-15b06.q1k chr14 36 1189 99878 101039 F 1154 96.53 1312 ambiguous_trans 3 ALIGNMENT 959 Y12-15b06.q1k chr13 36 1178 375970 377118 F 1143 95.71 1312 ambiguous_trans 19 ALIGNMENT 961 Y12-15b06.q1k chr02 1178 36 261073 262221 C 1143 95.71 1312 ambiguous_trans 15 ALIGNMENT 957 Y12-15b06.q1k chr12 1178 36 652325 653475 C 1143 95.63 1312 ambiguous_trans 22 ALIGNMENT 965 Y12-15b06.q1k chr16 36 1178 807911 809059 F 1143 95.89 1312 ambiguous_trans 11 ALIGNMENT 962 Y12-15b06.q1k chr04 36 1178 989989 991137 F 1143 95.80 1312 ambiguous_trans 14 ALIGNMENT 964 Y12-15b06.q1k chr04 1178 36 1208193 1209341 C 1143 95.80 1312 ambiguous_trans 12 ALIGNMENT 958 Y12-15b06.q1k chr10 1178 36 479464 480612 C 1143 95.63 1312 ambiguous_trans 20 ALIGNMENT 968 Y12-15b06.q1k chr04 36 1178 648767 649915 F 1143 95.98 1312 ambiguous_trans 7 ALIGNMENT 965 Y12-15b06.q1k chr12 36 1178 479248 480396 F 1143 95.89 1312 ambiguous_trans 10 ALIGNMENT 968 Y12-15b06.q1k chr07 36 1178 565117 566265 F 1143 95.98 1312 ambiguous_trans 8 ALIGNMENT 973 Y12-15b06.q1k chr15 1178 36 119205 120353 C 1143 96.06 1312 ambiguous_trans 5 ALIGNMENT 954 Y12-15b06.q1k chr16 1178 36 845911 847062 C 1143 95.54 1312 ambiguous_trans 23 ALIGNMENT 962 Y12-15b06.q1k chr04 36 1128 881568 882661 F 1093 96.89 1312 ambiguous_trans 18 ALIGNMENT 970 Y12-15b06.q1k chr13 1178 36 197834 198982 C 1143 95.98 1312 ambiguous_trans 6 ALIGNMENT 961 Y12-15b06.q1k chr13 1178 36 185667 186815 C 1143 95.71 1312 ambiguous_trans 17 ALIGNMENT 974 Y12-15b06.q1k chr05 36 1178 446666 447814 F 1143 96.15 1312 ambiguous_trans 4 ALIGNMENT 1014 Y12-15b06.q1k chr02 1193 36 222521 223687 C 1158 96.98 1312 ambiguous_trans 1 ALIGNMENT 964 Y12-15b06.q1k chr10 1178 36 473880 475028 C 1143 95.80 1312 ambiguous_trans 13 ALIGNMENT 958 Y12-15b06.q1k chr14 1178 36 520663 521811 C 1143 95.63 1312 ambiguous_trans 21 ALIGNMENT 967 Y12-15b06.q1k chr16 1178 36 57954 59102 C 1143 95.89 1312 ambiguous_trans 9 ALIGNMENT 953 Y12-15b06.q1k chr16 36 1178 853899 855047 F 1143 95.54 1312 ambiguous_trans 24 ALIGNMENT 961 Y12-15b06.q1k chr04 1178 36 1097265 1098413 C 1143 95.71 1312 ambiguous_trans 16 ALIGNMENT 1008 Y12-15b06.q1k chr13 36 1189 360272 361433 F 1154 96.79 1312 ambiguous_trans 2 ALIGNMENT 957 Y12-15b07.q1k chr05 1105 35 300457 301526 C 1071 97.20 1351 accept 0 ALIGNMENT 570 Y12-15b07.p1k chr05 11 618 296693 297302 F 608 98.52 1300 accept 0 ALIGNMENT 0 Y12-15b07.q1k chr09 62 389 238482 238481 F 328 0.00 1351 reject_low 1 ALIGNMENT 221 Y12-15b07.q1k chr09 390 930 238482 239023 F 541 80.78 1351 reject_low 1 ALIGNMENT 887 Y12-15b08.q1k chr13 32 1091 689310 690354 F 1060 96.23 1381 accept 0 ALIGNMENT 786 Y12-15b08.p1k chr13 944 28 693066 693972 C 917 96.84 1318 accept 0 ALIGNMENT 627 Y12-15b09.p1k chr03 767 9 216050 216811 C 759 95.13 1266 accept 0 ALIGNMENT 894 Y12-15b09.q1k chr03 33 1097 210482 211548 F 1065 95.12 1351 accept 0 ALIGNMENT 141 Y12-15b10.p1k chr13 259 19 922638 922880 C 241 86.72 1242 reject_low 6 ALIGNMENT 0 Y12-15b10.p1k chr01 260 772 177022 177021 F 513 0.00 1242 reject_low 7 ALIGNMENT 106 Y12-15b10.p1k chr04 259 19 1523231 1523464 C 241 83.40 1242 reject_low 14 ALIGNMENT 0 Y12-15b10.p1k chr12 260 772 13446 13445 F 513 0.00 1242 reject_low 15 ALIGNMENT 135 Y12-15b10.p1k chr01 15 259 176778 177022 F 245 86.94 1242 reject_low 7 ALIGNMENT 0 Y12-15b10.p1k chr07 772 260 1080312 1080311 C 513 0.00 1242 reject_low 16 ALIGNMENT 0 Y12-15b10.p1k chr13 772 260 922639 922638 C 513 0.00 1242 reject_low 6 ALIGNMENT 0 Y12-15b10.p1k chr04 772 260 1523232 1523231 C 513 0.00 1242 reject_low 14 ALIGNMENT 0 Y12-15b10.p1k chr06 260 772 99594 99593 F 513 0.00 1242 reject_low 8 ALIGNMENT 109 Y12-15b10.p1k chr09 19 259 8923 9156 F 241 83.82 1242 reject_low 13 ALIGNMENT 153 Y12-15b10.p1k chr09 259 19 433924 434166 C 241 88.38 1242 reject_low 2 ALIGNMENT 0 Y12-15b10.p1k chr09 772 260 433925 433924 C 513 0.00 1242 reject_low 2 ALIGNMENT 0 Y12-15b10.p1k chr11 260 772 2183 2182 F 513 0.00 1242 reject_low 3 ALIGNMENT 0 Y12-15b10.p1k chr08 260 772 12284 12283 F 513 0.00 1242 reject_low 11 ALIGNMENT 0 Y12-15b10.p1k chr03 772 260 307797 307796 C 513 0.00 1242 reject_low 5 ALIGNMENT 0 Y12-15b10.p1k chr16 260 772 8308 8307 F 513 0.00 1242 reject_low 4 ALIGNMENT 153 Y12-15b10.p1k chr11 19 259 1941 2183 F 241 88.38 1242 reject_low 3 ALIGNMENT 108 Y12-15b10.p1k chr10 15 259 8901 9139 F 245 83.67 1242 reject_low 12 ALIGNMENT 195 Y12-15b10.p1k chr12 259 19 94745 94987 C 241 94.19 1242 reject_low 1 ALIGNMENT 0 Y12-15b10.p1k chr12 772 260 94746 94745 C 513 0.00 1242 reject_low 1 ALIGNMENT 102 Y12-15b10.p1k chr12 15 259 13208 13446 F 245 82.86 1242 reject_low 15 ALIGNMENT 0 Y12-15b10.p1k chr15 260 772 11911 11910 F 513 0.00 1242 reject_low 10 ALIGNMENT 102 Y12-15b10.p1k chr02 259 19 809050 809283 C 241 83.40 1242 reject_low 17 ALIGNMENT 105 Y12-15b10.p1k chr07 259 19 1080311 1080544 C 241 83.82 1242 reject_low 16 ALIGNMENT 875 Y12-15b10.p1k chr12 19 1032 222819 223818 F 1014 97.04 1242 accept 0 ALIGNMENT 108 Y12-15b10.p1k chr08 15 259 12046 12284 F 245 83.67 1242 reject_low 11 ALIGNMENT 131 Y12-15b10.p1k chr06 15 259 99350 99594 F 245 85.71 1242 reject_low 8 ALIGNMENT 144 Y12-15b10.p1k chr16 19 259 8066 8308 F 241 87.14 1242 reject_low 4 ALIGNMENT 109 Y12-15b10.p1k chr15 15 259 11673 11911 F 245 84.08 1242 reject_low 10 ALIGNMENT 141 Y12-15b10.p1k chr03 259 19 307796 308038 C 241 86.72 1242 reject_low 5 ALIGNMENT 0 Y12-15b10.p1k chr09 260 772 9156 9155 F 513 0.00 1242 reject_low 13 ALIGNMENT 0 Y12-15b10.p1k chr10 260 772 9139 9138 F 513 0.00 1242 reject_low 12 ALIGNMENT 102 Y12-15b10.p1k chr05 265 19 63721 63960 C 247 83.00 1242 reject_low 9 ALIGNMENT 0 Y12-15b10.p1k chr05 772 266 63722 63721 C 507 0.00 1242 reject_low 9 ALIGNMENT 864 Y12-15b10.q1k chr12 1057 34 225900 226920 C 1024 96.00 1338 accept 0 ALIGNMENT 0 Y12-15b10.p1k chr02 772 260 809051 809050 C 513 0.00 1242 reject_low 17 ALIGNMENT 1009 Y12-15b11.p1k chr13 1237 23 174538 175754 C 1215 95.31 1247 accept 0 ALIGNMENT 846 Y12-15b11.q1k chr13 38 1210 170744 171929 F 1173 91.65 1237 accept 0 ALIGNMENT 946 Y12-15b13.q1k chr12 1172 34 36770 37929 C 1139 95.00 1309 accept 0 ALIGNMENT 848 Y12-15b13.p1k chr12 13 1171 31948 33099 F 1159 93.79 1234 accept 0 ALIGNMENT 934 Y12-15b14.p1k chr15 27 1089 1008666 1009714 F 1063 97.46 1249 accept 0 ALIGNMENT 966 Y12-15b14.q1k chr15 1312 36 1012640 1013917 C 1277 94.36 1326 accept 0 ALIGNMENT 0 Y12-15b15.p1k chr07 636 62 1068998 1068997 C 575 0.00 1256 reject_low 4 ALIGNMENT 0 Y12-15b15.p1k chr07 62 647 1076613 1076612 F 586 0.00 1256 reject_low 6 ALIGNMENT 982 Y12-15b15.q1k chr07 35 1198 465787 466952 F 1164 95.96 1328 accept 0 ALIGNMENT 627 Y12-15b15.p1k chr15 1059 57 23883 24897 C 1003 89.13 1256 ambiguous_tel 3 ALIGNMENT 646 Y12-15b15.p1k chr09 1059 54 18143 19144 C 1006 90.36 1256 ambiguous_tel 2 ALIGNMENT 0 Y12-15b15.p1k chr02 62 647 805353 805352 F 586 0.00 1256 reject_low 5 ALIGNMENT 650 Y12-15b15.p1k chr10 1059 54 18126 19126 C 1006 90.46 1256 ambiguous_tel 1 ALIGNMENT 115 Y12-15b15.p1k chr07 648 882 1076613 1076846 F 235 83.40 1256 reject_low 6 ALIGNMENT 114 Y12-15b15.p1k chr02 648 973 805353 805675 F 326 79.14 1256 reject_low 5 ALIGNMENT 209 Y12-15b15.p1k chr07 1007 637 1068633 1068997 C 371 87.06 1256 reject_low 4 ALIGNMENT 957 Y12-15b16.p1k chr15 1137 14 557737 558843 C 1124 96.98 1231 accept 0 ALIGNMENT 894 Y12-15b16.q1k chr15 34 1133 554359 555467 F 1100 95.45 1304 accept 0 ALIGNMENT 890 Y12-15b17.p1k chr15 996 15 98965 99944 C 982 98.17 1222 accept 0 ALIGNMENT 964 Y12-15b17.q1k chr15 34 1196 94697 95854 F 1163 95.53 1314 accept 0 ALIGNMENT 0 Y12-15b18.q1k chr12 574 62 490544 490543 C 513 0.00 1292 reject_low 3 ALIGNMENT 951 Y12-15b18.p1k chr12 16 1089 455756 456826 F 1074 96.93 1185 accept 0 ALIGNMENT 970 Y12-15b18.q1k chr12 1089 35 461201 462252 C 1055 97.73 1292 accept 0 ALIGNMENT 427 Y12-15b18.q1k chr12 1089 575 490032 490543 C 515 94.95 1292 reject_low 3 ALIGNMENT 970 Y12-15b18.q1k chr12 1089 35 452064 453115 C 1055 97.73 1292 reject_low 2 ALIGNMENT 951 Y12-15b18.p1k chr12 16 1089 464893 465963 F 1074 96.93 1185 reject_low 1 ALIGNMENT 834 Y12-15b20.p1k chr04 1184 114 133534 134615 C 1071 92.81 1199 reject_low 1 ALIGNMENT 0 Y12-15b20.p1k chr04 113 62 134616 134615 C 52 0.00 1199 reject_low 1 ALIGNMENT 1029 Y12-15b20.q1k chr04 39 1216 224097 225281 F 1178 97.20 1238 accept 0 ALIGNMENT 996 Y12-15b20.p1k chr04 1185 17 227530 228713 C 1169 95.38 1199 accept 0 ALIGNMENT 994 Y12-15b21.p1k chr16 16 1147 670831 671957 F 1132 97.70 1168 accept 0 ALIGNMENT 943 Y12-15b21.q1k chr16 1099 38 674797 675860 C 1062 97.55 1228 accept 0 ALIGNMENT 999 Y12-15b22.p1k chr04 1157 22 1218743 1219878 C 1136 97.27 1157 accept 0 ALIGNMENT 960 Y12-15b22.q1k chr04 39 1131 1215538 1216643 F 1093 96.98 1208 accept 0 ALIGNMENT 0 Y12-15b23.p1k chr03 100 840 124462 124461 F 741 0.00 1145 reject_low 23 ALIGNMENT 0 Y12-15b23.p1k chr07 840 102 401961 401960 C 739 0.00 1145 reject_low 18 ALIGNMENT 0 Y12-15b23.p1k chr08 922 62 543939 543938 C 861 0.00 1145 reject_low 11 ALIGNMENT 65 Y12-15b23.p1k chr11 1143 923 457886 458111 C 221 79.64 1145 reject_low 19 ALIGNMENT 0 Y12-15b23.p1k chr14 922 100 102521 102548 C 823 0.00 1145 reject_low 42 ALIGNMENT 0 Y12-15b23.p1k chr05 840 301 442789 442788 C 540 0.00 1145 reject_low 1 ALIGNMENT 0 Y12-15b23.p1k chr02 840 102 259575 259574 C 739 0.00 1145 reject_low 17 ALIGNMENT 0 Y12-15b23.p1k chr02 191 922 258849 265163 F 732 0.00 1145 reject_low 39 ALIGNMENT 21 Y12-15b23.p1k chr14 923 950 102552 102580 F 28 89.29 1145 reject_low 45,46 ALIGNMENT 69 Y12-15b23.p1k chr14 1143 923 96713 96938 C 221 80.09 1145 reject_low 41 ALIGNMENT 0 Y12-15b23.p1k chr02 62 106 258765 258764 F 45 0.00 1145 reject_low 38,39 ALIGNMENT 0 Y12-15b23.p1k chr04 631 62 1201813 1201812 C 570 0.00 1145 reject_low 12 ALIGNMENT 77 Y12-15b23.p1k chr07 705 624 122272 122354 C 82 98.78 1145 reject_low 10 ALIGNMENT 112 Y12-15b23.p1k chr05 300 102 442788 442985 C 199 88.44 1145 reject_low 1 ALIGNMENT 0 Y12-15b23.p1k chr03 709 922 151358 151520 F 214 0.00 1145 reject_low 47 ALIGNMENT 0 Y12-15b23.p1k chr05 706 840 135498 135497 F 135 0.00 1145 reject_low 7 ALIGNMENT 56 Y12-15b23.p1k chr12 21 154 92301 92430 F 134 85.07 1145 reject_low 6 ALIGNMENT 0 Y12-15b23.p1k chr05 62 623 135417 135416 F 562 0.00 1145 reject_low 7 ALIGNMENT 67 Y12-15b23.p1k chr03 100 21 169201 169281 C 80 97.50 1145 reject_low 44 ALIGNMENT 0 Y12-15b23.p1k chr11 840 710 202641 202640 C 131 0.00 1145 reject_low 5 ALIGNMENT 0 Y12-15b23.p1k chr07 62 922 401965 401964 F 861 0.00 1145 reject_low 20 ALIGNMENT 63 Y12-15b23.p1k chr03 101 21 151516 151596 C 81 96.30 1145 reject_low 40 ALIGNMENT 0 Y12-15b23.p1k chr16 623 62 582140 582139 C 562 0.00 1145 reject_low 2 ALIGNMENT 66 Y12-15b23.p1k chr07 1143 923 817501 817726 C 221 79.64 1145 reject_low 15 ALIGNMENT 68 Y12-15b23.p1k chr02 101 21 221038 221119 C 81 97.53 1145 reject_low 16 ALIGNMENT 0 Y12-15b23.p1k chr02 840 100 226625 226624 C 741 0.00 1145 reject_low 21 ALIGNMENT 0 Y12-15b23.p1k chr05 840 100 487830 487829 C 741 0.00 1145 reject_low 33 ALIGNMENT 57 Y12-15b23.p1k chr05 1053 923 492692 492825 C 131 82.44 1145 reject_low 30 ALIGNMENT 66 Y12-15b23.p1k chr07 21 99 817650 817729 F 79 97.47 1145 reject_low 25 ALIGNMENT 0 Y12-15b23.p1k chr14 922 100 96939 102548 C 823 0.00 1145 reject_low 41 ALIGNMENT 0 Y12-15b23.p1k chr03 922 62 124460 124459 C 861 0.00 1145 reject_low 28 ALIGNMENT 20 Y12-15b23.p1k chr05 99 73 443366 443392 C 27 92.59 1145 reject_low 1 ALIGNMENT 61 Y12-15b23.p1k chr03 1143 923 142849 143074 C 221 79.64 1145 reject_low 40 ALIGNMENT 85 Y12-15b23.p1k chr11 709 622 202640 202727 C 88 98.86 1145 reject_low 5 ALIGNMENT 22 Y12-15b23.p1k chr05 970 1001 487880 487910 F 32 93.75 1145 reject_low 37 ALIGNMENT 0 Y12-15b23.p1k chr03 969 101 168878 169200 C 869 0.00 1145 reject_low 44 ALIGNMENT 63 Y12-15b23.p1k chr07 923 1143 401965 402190 F 221 79.19 1145 reject_low 20 ALIGNMENT 0 Y12-15b23.p1k chr05 922 62 492826 492825 C 861 0.00 1145 reject_low 30 ALIGNMENT 31 Y12-15b23.p1k chr05 99 21 487829 487907 C 79 82.28 1145 reject_low 33 ALIGNMENT 66 Y12-15b23.p1k chr11 21 99 458035 458114 F 79 97.47 1145 reject_low 27 ALIGNMENT 32 Y12-15b23.p1k chr02 107 190 258765 258848 F 84 83.33 1145 reject_low 38,39 ALIGNMENT 0 Y12-15b23.p1k chr13 62 623 480613 480612 F 562 0.00 1145 reject_low 4 ALIGNMENT 1020 Y12-15b23.q1k chr05 1194 37 439039 440195 C 1158 96.98 1201 accept 0 ALIGNMENT 0 Y12-15b23.p1k chr04 840 706 1201740 1201739 C 135 0.00 1145 reject_low 12 ALIGNMENT 0 Y12-15b23.p1k chr09 706 840 300299 300298 F 135 0.00 1145 reject_low 3 ALIGNMENT 0 Y12-15b23.p1k chr07 100 840 817729 817728 F 741 0.00 1145 reject_low 25 ALIGNMENT 66 Y12-15b23.p1k chr02 99 21 226624 226703 C 79 97.47 1145 reject_low 21 ALIGNMENT 0 Y12-15b23.p1k chr05 101 100 442986 443365 C 2 0.00 1145 reject_low 1 ALIGNMENT 66 Y12-15b23.p1k chr14 21 99 96862 96941 F 79 97.47 1145 reject_low 45 ALIGNMENT 0 Y12-15b23.p1k chr05 922 62 449314 449313 C 861 0.00 1145 reject_low 35 ALIGNMENT 0 Y12-15b23.p1k chr05 922 62 443727 443726 C 861 0.00 1145 reject_low 34 ALIGNMENT 75 Y12-15b23.p1k chr09 616 705 300211 300299 F 90 95.56 1145 reject_low 3 ALIGNMENT 0 Y12-15b23.p1k chr09 840 100 324830 324829 C 741 0.00 1145 reject_low 29 ALIGNMENT 0 Y12-15b23.p1k chr02 191 916 258849 259571 F 726 0.00 1145 reject_low 38 ALIGNMENT 0 Y12-15b23.p1k chr05 100 840 492828 492827 F 741 0.00 1145 reject_low 24 ALIGNMENT 68 Y12-15b23.p1k chr07 101 21 401960 402041 C 81 97.53 1145 reject_low 18 ALIGNMENT 0 Y12-15b23.p1k chr13 715 840 480703 480702 F 126 0.00 1145 reject_low 4 ALIGNMENT 0 Y12-15b23.p1k chr09 62 922 324832 324831 F 861 0.00 1145 reject_low 32 ALIGNMENT 66 Y12-15b23.p1k chr05 21 99 492749 492828 F 79 97.47 1145 reject_low 24 ALIGNMENT 51 Y12-15b23.p1k chr12 1088 923 92209 92377 C 166 80.12 1145 reject_low 31 ALIGNMENT 66 Y12-15b23.p1k chr14 21 99 102444 102523 F 79 97.47 1145 reject_low 46 ALIGNMENT 22 Y12-15b23.p1k chr05 970 1001 449346 449376 F 32 93.75 1145 reject_low 36 ALIGNMENT 0 Y12-15b23.p1k chr07 62 623 185712 185711 F 562 0.00 1145 reject_low 9 ALIGNMENT 0 Y12-15b23.p1k chr14 100 922 96942 102551 F 823 0.00 1145 reject_low 45 ALIGNMENT 0 Y12-15b23.p1k chr07 706 840 185793 185792 F 135 0.00 1145 reject_low 9 ALIGNMENT 54 Y12-15b23.p1k chr09 99 21 324829 324908 C 79 92.41 1145 reject_low 29 ALIGNMENT 0 Y12-15b23.p1k chr02 840 100 265162 265161 C 741 0.00 1145 reject_low 22 ALIGNMENT 0 Y12-15b23.p1k chr11 922 62 458112 458111 C 861 0.00 1145 reject_low 19 ALIGNMENT 0 Y12-15b23.p1k chr05 62 101 435218 435217 F 40 0.00 1145 accept 0 ALIGNMENT 82 Y12-15b23.p1k chr13 624 714 480613 480703 F 91 97.80 1145 reject_low 4 ALIGNMENT 66 Y12-15b23.p1k chr03 21 99 124383 124462 F 79 97.47 1145 reject_low 23 ALIGNMENT 0 Y12-15b23.p1k chr14 100 922 102524 102551 F 823 0.00 1145 reject_low 46 ALIGNMENT 85 Y12-15b23.p1k chr03 624 708 151273 151357 F 85 100.00 1145 reject_low 47 ALIGNMENT 74 Y12-15b23.p1k chr04 705 632 1201739 1201812 C 74 100.00 1145 reject_low 12 ALIGNMENT 69 Y12-15b23.p1k chr14 1143 923 102295 102520 C 221 80.09 1145 reject_low 42 ALIGNMENT 0 Y12-15b23.p1k chr02 840 102 221039 221038 C 739 0.00 1145 reject_low 16 ALIGNMENT 0 Y12-15b23.p1k chr02 62 922 226627 226626 F 861 0.00 1145 reject_low 14 ALIGNMENT 66 Y12-15b23.p1k chr02 923 1143 221043 221268 F 221 79.64 1145 reject_low 13 ALIGNMENT 0 Y12-15b23.p1k chr05 62 969 487880 487879 F 908 0.00 1145 reject_low 37 ALIGNMENT 66 Y12-15b23.p1k chr02 923 1143 226627 226852 F 221 79.64 1145 reject_low 14 ALIGNMENT 0 Y12-15b23.p1k chr03 101 623 143079 151272 F 523 0.00 1145 reject_low 47 ALIGNMENT 0 Y12-15b23.p1k chr07 623 62 122355 122354 C 562 0.00 1145 reject_low 10 ALIGNMENT 29 Y12-15b23.p1k chr14 99 70 102549 102578 C 30 100.00 1145 reject_low 41,42 ALIGNMENT 0 Y12-15b23.p1k chr07 840 706 122273 122272 C 135 0.00 1145 reject_low 10 ALIGNMENT 29 Y12-15b23.p1k chr03 21 109 168850 168938 F 89 80.90 1145 reject_low 43 ALIGNMENT 0 Y12-15b23.p1k chr07 922 62 817727 817726 C 861 0.00 1145 reject_low 15 ALIGNMENT 63 Y12-15b23.p1k chr03 923 1143 151521 151745 F 221 79.64 1145 reject_low 47 ALIGNMENT 0 Y12-15b23.p1k chr05 62 969 449346 449345 F 908 0.00 1145 reject_low 36 ALIGNMENT 69 Y12-15b23.p1k chr02 923 1143 265164 265389 F 221 80.09 1145 reject_low 39 ALIGNMENT 0 Y12-15b23.p1k chr03 922 102 143075 151515 C 821 0.00 1145 reject_low 40 ALIGNMENT 0 Y12-15b23.p1k chr07 623 62 876480 876479 C 562 0.00 1145 reject_low 8 ALIGNMENT 0 Y12-15b23.p1k chr16 840 717 582049 582048 C 124 0.00 1145 reject_low 2 ALIGNMENT 0 Y12-15b23.p1k chr09 62 615 300211 300210 F 554 0.00 1145 reject_low 3 ALIGNMENT 0 Y12-15b23.p1k chr11 100 840 458114 458113 F 741 0.00 1145 reject_low 27 ALIGNMENT 0 Y12-15b23.p1k chr02 62 922 221043 221042 F 861 0.00 1145 reject_low 13 ALIGNMENT 22 Y12-15b23.p1k chr05 1001 923 443648 443726 C 79 75.95 1145 reject_low 34 ALIGNMENT 64 Y12-15b23.p1k chr02 917 1143 259572 259804 F 227 78.85 1145 reject_low 38 ALIGNMENT 0 Y12-15b23.p1k chr08 100 840 543941 543940 F 741 0.00 1145 reject_low 26 ALIGNMENT 0 Y12-15b23.p1k chr07 840 706 876399 876398 C 135 0.00 1145 reject_low 8 ALIGNMENT 0 Y12-15b23.p1k chr11 621 62 202728 202727 C 560 0.00 1145 reject_low 5 ALIGNMENT 62 Y12-15b23.p1k chr03 1088 923 124291 124459 C 166 81.33 1145 reject_low 28 ALIGNMENT 0 Y12-15b23.p1k chr12 155 840 92430 92429 F 686 0.00 1145 reject_low 6 ALIGNMENT 81 Y12-15b23.p1k chr07 705 624 876398 876479 C 82 100.00 1145 reject_low 8 ALIGNMENT 81 Y12-15b23.p1k chr05 624 705 135417 135498 F 82 100.00 1145 reject_low 7 ALIGNMENT 88 Y12-15b23.p1k chr16 716 624 582048 582139 C 93 98.92 1145 reject_low 2 ALIGNMENT 57 Y12-15b23.p1k chr03 917 1062 169198 169346 F 146 81.51 1145 reject_low 43 ALIGNMENT 64 Y12-15b23.p1k chr03 21 100 142998 143078 F 80 96.25 1145 reject_low 47 ALIGNMENT 66 Y12-15b23.p1k chr08 21 99 543862 543941 F 79 97.47 1145 reject_low 26 ALIGNMENT 68 Y12-15b23.p1k chr02 101 21 259574 259655 C 81 97.53 1145 reject_low 17 ALIGNMENT 0 Y12-15b23.p1k chr12 922 62 92378 92377 C 861 0.00 1145 reject_low 31 ALIGNMENT 66 Y12-15b23.p1k chr02 99 21 265161 265240 C 79 97.47 1145 reject_low 22 ALIGNMENT 0 Y12-15b23.p1k chr03 110 916 168939 169197 F 807 0.00 1145 reject_low 43 ALIGNMENT 22 Y12-15b23.p1k chr03 1001 970 168847 168877 C 32 93.75 1145 reject_low 44 ALIGNMENT 22 Y12-15b23.p1k chr05 1001 923 449235 449313 C 79 75.95 1145 reject_low 35 ALIGNMENT 78 Y12-15b23.p1k chr07 624 705 185712 185793 F 82 98.78 1145 reject_low 9 ALIGNMENT 69 Y12-15b23.p1k chr08 1143 923 543713 543938 C 221 80.09 1145 reject_low 11 ALIGNMENT 41 Y12-15b23.p1k chr09 923 1041 324832 324953 F 119 80.67 1145 reject_low 32 ALIGNMENT 665 Y12-15b23.p1k chr05 102 826 435218 435942 F 725 98.34 1145 accept 0 ALIGNMENT 970 Y12-15b24.p1k chr11 1151 21 79825 80947 C 1131 96.46 1152 accept 0 ALIGNMENT 1002 Y12-15b24.q1k chr11 36 1191 76833 77985 F 1156 96.80 1191 accept 0 ALIGNMENT 109 Y12-15c01.p1k chr12 600 42 454222 454757 C 559 76.57 1226 accept_chi 1 ALIGNMENT 545 Y12-15c01.q1k chr12 997 35 676457 677403 C 963 87.23 1320 accept_chi 0 ALIGNMENT 1026 Y12-15c02.q1k chr13 36 1242 126474 127687 F 1207 95.44 1323 accept 0 ALIGNMENT 1007 Y12-15c02.p1k chr13 1234 36 130433 131639 C 1199 96.08 1244 accept 0 ALIGNMENT 778 Y12-15c03.p1k chr04 1 869 813705 814569 F 869 97.47 1296 accept 0 ALIGNMENT 941 Y12-15c03.q1k chr04 1142 35 818256 819367 C 1108 97.11 1350 accept 0 ALIGNMENT 884 Y12-15c04.p1k chr12 9 950 462644 463582 F 942 98.51 1314 accept 1 ALIGNMENT 791 Y12-15c04.q1k chr12 942 34 457837 458751 C 909 96.48 1316 accept 0 ALIGNMENT 791 Y12-15c04.q1k chr12 942 34 466974 467888 C 909 96.48 1316 accept 1 ALIGNMENT 884 Y12-15c04.p1k chr12 9 950 453507 454445 F 942 98.51 1314 accept 0 ALIGNMENT 832 Y12-15c05.p1k chr05 23 941 286790 287708 F 919 98.04 1257 accept 0 ALIGNMENT 1054 Y12-15c05.q1k chr05 1302 37 290604 291868 C 1266 95.97 1394 accept 0 ALIGNMENT 852 Y12-15c06.p1k chr16 9 1020 36937 37945 F 1012 96.34 1283 accept 0 ALIGNMENT 979 Y12-15c06.q1k chr16 1123 37 40711 41806 C 1087 97.61 1335 accept 0 ALIGNMENT 991 Y12-15c07.q1k chr06 29 1089 220429 221494 F 1061 98.30 1367 accept 0 ALIGNMENT 0 Y12-15c07.q1k chr09 94 62 317930 317929 C 33 0.00 1367 reject_low 1 ALIGNMENT 678 Y12-15c07.q1k chr09 857 95 317167 317929 C 763 96.33 1367 reject_low 1 ALIGNMENT 21 Y12-15c07.p1k chr13 438 415 896934 896957 C 24 100.00 1327 reject_low 2 ALIGNMENT 0 Y12-15c07.p1k chr13 742 439 896935 896934 C 304 0.00 1327 reject_low 2 ALIGNMENT 811 Y12-15c07.p1k chr06 1001 21 224021 224985 C 981 95.72 1327 accept 0 ALIGNMENT 0 Y12-15c07.p1k chr13 414 62 896958 896957 C 353 0.00 1327 reject_low 2 ALIGNMENT 714 Y12-15c08.q1k chr08 885 35 166072 166920 C 851 95.42 1506 accept_chi 1 ALIGNMENT 985 Y12-15c08.p1k chr03 21 1166 207955 209103 F 1146 95.90 1263 accept_chi 0 ALIGNMENT 886 Y12-15c09.q1k chr15 1085 35 544266 545313 C 1051 96.48 1404 accept 0 ALIGNMENT 426 Y12-15c09.p1k chr15 6 582 539976 540550 F 577 92.03 1179 accept 0 ALIGNMENT 0 Y12-15c09.p1k chr14 62 597 17383 17382 F 536 0.00 1179 reject_low 1 ALIGNMENT 78 Y12-15c09.p1k chr14 598 878 17383 17666 F 281 79.36 1179 reject_low 1 ALIGNMENT 824 Y12-15c10.p1k chr12 15 1060 460585 461636 F 1046 94.46 1303 accept 1 ALIGNMENT 571 Y12-15c10.p1k chr12 332 1032 489754 490443 F 701 95.15 1303 reject_low 2 ALIGNMENT 824 Y12-15c10.p1k chr12 15 1060 451448 452499 F 1046 94.46 1303 accept 0 ALIGNMENT 942 Y12-15c10.q1k chr12 1036 33 453548 454552 C 1004 98.51 1362 accept 0 ALIGNMENT 0 Y12-15c10.p1k chr12 62 331 489754 489753 F 270 0.00 1303 reject_low 2 ALIGNMENT 942 Y12-15c10.q1k chr12 1036 33 462685 463689 C 1004 98.51 1362 accept 1 ALIGNMENT 151 Y12-15c11.q1k vc_7 884 673 2516 2727 C 212 91.51 1356 reject_low 6 ALIGNMENT 0 Y12-15c11.p1k chrm 82 653 44248 44247 F 572 0.00 653 reject_low 11 ALIGNMENT 43 Y12-15c11.p1k chrm 31 81 44197 44248 F 51 98.04 653 reject_low 11 ALIGNMENT 46 Y12-15c11.q1k vc_4 761 673 1446 1534 C 89 86.52 1356 reject_low 10 ALIGNMENT 0 Y12-15c11.p1k chrm 618 653 56078 56077 F 36 0.00 653 accept 0 ALIGNMENT 108 Y12-15c11.q1k vc_4 673 834 6353 6514 F 162 90.74 1356 reject_low 8 ALIGNMENT 151 Y12-15c11.q1k vc_5 673 884 2398 2609 F 212 91.51 1356 reject_low 5 ALIGNMENT 151 Y12-15c11.q1k vc_1 673 884 2531 2742 F 212 91.51 1356 reject_low 1 ALIGNMENT 0 Y12-15c11.p1k chrm 87 653 48012 48011 F 567 0.00 653 reject_low 9 ALIGNMENT 405 Y12-15c11.p1k chrm 10 617 55474 56078 F 608 98.52 653 accept 0 ALIGNMENT 108 Y12-15c11.q1k vc_4 673 834 126 287 F 162 90.74 1356 reject_low 7 ALIGNMENT 151 Y12-15c11.q1k vc_3 673 884 2531 2742 F 212 91.51 1356 reject_low 3 ALIGNMENT 138 Y12-15c11.q1k chrm 604 41 55518 56074 C 564 78.90 1356 accept 0 ALIGNMENT 151 Y12-15c11.q1k vc_4 884 673 5601 5812 C 212 91.51 1356 reject_low 4 ALIGNMENT 151 Y12-15c11.q1k vc_2 673 884 2164 2375 F 212 91.51 1356 reject_low 2 ALIGNMENT 49 Y12-15c11.p1k chrm 25 86 47949 48012 F 62 95.16 653 reject_low 9 ALIGNMENT 922 Y12-15c12.q1k chr16 1076 36 490262 491313 C 1041 97.69 1300 accept 0 ALIGNMENT 1041 Y12-15c12.p1k chr16 22 1265 486684 487918 F 1244 95.90 1266 accept 0 ALIGNMENT 977 Y12-15c13.q1k chr13 38 1134 627658 628768 F 1097 97.08 1303 accept 0 ALIGNMENT 967 Y12-15c13.p1k chr13 1204 19 631191 632377 C 1186 95.28 1226 accept 0 ALIGNMENT 889 Y12-15c14.p1k chr15 1023 14 224731 225738 C 1010 97.03 1249 accept 0 ALIGNMENT 877 Y12-15c14.q1k chr15 39 951 219532 220444 F 913 99.12 1362|0,3 accept 0 ALIGNMENT 0 Y12-15c14.q1k chr15 949 948 220442 220732 F 0 0.00 1362 accept 0 ALIGNMENT 371 Y12-15c14.p1k chr16 914 14 53920 54818 C 901 81.35 1249 reject_low 1 ALIGNMENT 121 Y12-15c14.q1k chr15 946 1183 220730 220953 F 238 88.24 1362|3,0 accept 0 ALIGNMENT 824 Y12-15c15.q1k chr12 959 36 874436 875358 C 924 96.97 1343 accept 0 ALIGNMENT 848 Y12-15c15.p1k chr12 1 925 870905 871830 F 925 97.62 1240 accept 0 ALIGNMENT 861 Y12-15c16.q1k chr04 36 1013 1315829 1316792 F 978 97.44 1358 accept 0 ALIGNMENT 535 Y12-15c16.p1k chr04 916 13 1320301 1321172 C 904 89.82 1270 accept 0 ALIGNMENT 956 Y12-15c17.p1k chr03 1209 20 178429 179621 C 1190 94.62 1211 accept 0 ALIGNMENT 967 Y12-15c17.q1k chr03 35 1235 175796 177022 F 1201 95.25 1290 accept 0 ALIGNMENT 214 Y12-15c18.q1k chr05 36 291 85680 85935 F 256 94.53 292 manual 2 ALIGNMENT 0 Y12-15c18.p1k vc_4 250 62 5848 5847 C 189 0.00 286 reject_vc 6 ALIGNMENT 0 Y12-15c18.p1k vc_1 62 250 2496 2495 F 189 0.00 286 reject_vc 4 ALIGNMENT 36 Y12-15c18.p1k vc_3 251 286 2496 2531 F 36 100.00 286 reject_vc 5 ALIGNMENT 0 Y12-15c18.p1k vc_3 62 250 2496 2495 F 189 0.00 286 reject_vc 5 ALIGNMENT 236 Y12-15c18.p1k chr10 8 250 525051 525294 F 243 99.18 286 manual 1 ALIGNMENT 0 Y12-15c18.p1k chr05 286 251 85678 85677 C 36 0.00 286 manual 3 ALIGNMENT 253 Y12-15c18.q1k chr10 291 36 525036 525291 C 256 99.61 292 manual 0 ALIGNMENT 0 Y12-15c18.p1k chr10 251 286 525294 525293 F 36 0.00 286 manual 1 ALIGNMENT 36 Y12-15c18.p1k vc_1 251 286 2496 2531 F 36 100.00 286 reject_vc 4 ALIGNMENT 36 Y12-15c18.p1k vc_4 286 251 5812 5847 C 36 100.00 286 reject_vc 6 ALIGNMENT 203 Y12-15c18.p1k chr05 250 8 85677 85920 C 243 94.65 286 manual 3 ALIGNMENT 925 Y12-15c19.q1k chr16 39 1234 705107 706302 F 1196 93.56 1257 accept 0 ALIGNMENT 942 Y12-15c19.p1k chr16 1062 24 709956 710990 C 1039 98.27 1221 accept 0 ALIGNMENT 32 Y12-15c20.q1k chr11 712 629 10977 11060 C 84 79.76 1259 reject_low 1 ALIGNMENT 845 Y12-15c20.p1k chr15 1187 141 1058102 1059149 C 1047 94.75 1188|0,2 accept 0 ALIGNMENT 0 Y12-15c20.q1k chr11 628 537 11061 11152 C 92 0.00 1259 reject_low 1 ALIGNMENT 0 Y12-15c20.q1k chr11 486 62 11203 11202 C 425 0.00 1259 reject_low 1 ALIGNMENT 0 Y12-15c20.q1k chr11 763 713 10978 10977 C 51 0.00 1259 reject_low 1 ALIGNMENT 0 Y12-15c20.p1k chr15 142 143 1059148 1059209 C 0 0.00 1188 accept 0 ALIGNMENT 55 Y12-15c20.p1k chr15 91 29 1061229 1061291 C 63 95.24 1188|4,0 accept 0 ALIGNMENT 783 Y12-15c20.q1k chr15 35 962 1055114 1056045 F 928 95.80 1259 accept 0 ALIGNMENT 49 Y12-15c20.p1k chr15 143 84 1059209 1059268 C 60 95.00 1188|1,4 accept 0 ALIGNMENT 26 Y12-15c20.q1k chr11 536 487 11153 11202 C 50 84.00 1259 reject_low 1 ALIGNMENT 0 Y12-15c20.p1k chr15 87 88 1059265 1061232 C 0 0.00 1188 accept 0 ALIGNMENT 934 Y12-15c21.p1k chr09 21 1158 222588 223741 F 1138 95.17 1159 accept 0 ALIGNMENT 903 Y12-15c21.q1k chr09 1122 35 225697 226770 C 1088 96.51 1230 accept 0 ALIGNMENT 981 Y12-15c22.p1k chr07 1122 17 46964 48064 C 1106 97.29 1191 accept 0 ALIGNMENT 995 Y12-15c22.q1k chr07 36 1203 42764 43935 F 1168 96.58 1224 accept 0 ALIGNMENT 960 Y12-15c23.q1k chr16 1258 38 412073 413297 C 1221 94.51 1316 accept 0 ALIGNMENT 1000 Y12-15c23.p1k chr16 16 1161 409318 410471 F 1146 96.60 1161 accept 0 ALIGNMENT 908 Y12-15c24.q1k chr07 1087 36 690084 691143 C 1052 96.77 1276 accept 0 ALIGNMENT 800 Y12-15c24.p1k chr07 14 972 686765 687718 F 959 95.83 1231 accept 0 ALIGNMENT 914 Y12-15d02.q1k chr16 33 1105 692729 693792 F 1073 95.90 1368 accept 0 ALIGNMENT 853 Y12-15d02.p1k chr16 994 23 696532 697495 C 972 96.81 1296 accept 0 ALIGNMENT 960 Y12-15d03.q1k chr10 1201 40 563344 564491 C 1162 95.96 1379 accept 0 ALIGNMENT 751 Y12-15d03.p1k chr10 20 861 560477 561314 F 842 97.74 1285 accept 0 ALIGNMENT 878 Y12-15d04.q1k chr11 1003 30 128805 129773 C 974 97.95 1368 accept 0 ALIGNMENT 710 Y12-15d04.p1k chr11 3 785 124363 125147 F 783 97.70 1322 accept 0 ALIGNMENT 1019 Y12-15d05.q1k chr12 1227 34 28037 29244 C 1194 96.15 1356 accept 0 ALIGNMENT 823 Y12-15d05.p1k chr12 16 979 25051 26007 F 964 96.78 1287 accept 0 ALIGNMENT 503 Y12-15d06.q1k chr14 798 25 39803 40577 C 774 89.41 1433 accept 0 ALIGNMENT 715 Y12-15d07.p1k chr10 1005 15 601375 602349 C 991 92.73 1323 accept 0 ALIGNMENT 899 Y12-15d07.q1k chr10 34 1078 599452 600506 F 1045 96.84 1372 accept 0 ALIGNMENT 680 Y12-15d08.q1k chr11 33 842 472201 473003 F 810 96.42 1484 accept 0 ALIGNMENT 541 Y12-15d08.p1k chr11 821 35 477530 478311 C 787 90.47 1502 accept 0 ALIGNMENT 442 Y12-15d09.p1k chr13 789 129 175048 175693 C 661 91.23 1525 accept 0 ALIGNMENT 53 Y12-15d10.p1k chr15 118 12 326537 326644 C 107 90.65 1331 accept 0 ALIGNMENT 22 Y12-15d10.p1k chr16 400 427 212815 212842 F 28 100.00 1331 reject_low 1 ALIGNMENT 921 Y12-15d10.q1k chr15 32 1165 320763 321904 F 1134 95.15 1379 accept 0 ALIGNMENT 0 Y12-15d10.p1k chr16 428 773 212842 212841 F 346 0.00 1331 reject_low 1 ALIGNMENT 0 Y12-15d10.p1k chr15 118 119 326511 326536 C 0 0.00 1331 accept 0 ALIGNMENT 719 Y12-15d10.p1k chr15 996 119 325638 326510 C 878 95.90 1331 accept 0 ALIGNMENT 0 Y12-15d10.p1k chr16 62 399 212815 212814 F 338 0.00 1331 reject_low 1 ALIGNMENT 253 Y12-15d12.q1k chr01 1094 529 198473 199039 C 566 83.22 1347 accept 0 ALIGNMENT 0 Y12-15d12.q1k chr01 528 62 199040 199039 C 467 0.00 1347 accept 0 ALIGNMENT 1017 Y12-15d13.q1k chr11 1308 38 128427 129691 C 1271 94.57 1329 accept 0 ALIGNMENT 937 Y12-15d13.p1k chr11 16 1127 123670 124773 F 1112 96.04 1251 accept 0 ALIGNMENT 828 Y12-15d14.q1k chr13 931 31 908738 909636 C 901 98.22 1379 accept 0 ALIGNMENT 845 Y12-15d14.p1k chr13 4 1054 904015 905052 F 1051 94.77 1175 accept 0 ALIGNMENT 269 Y12-15d17.q1k chr07 420 89 535764 536101 C 332 95.78 1311 ambiguous_trans 21 ALIGNMENT 280 Y12-15d17.q1k chr02 420 109 265161 265472 C 312 98.72 1311 ambiguous_trans 18 ALIGNMENT 0 Y12-15d17.q1k chr02 886 421 226625 226624 C 466 0.00 1311 ambiguous_trans 9 ALIGNMENT 0 Y12-15d17.q1k chr15 172 62 594760 594759 C 111 0.00 1311 ambiguous_trans_ua 25 ALIGNMENT 299 Y12-15d17.q1k chr14 88 420 96609 96941 F 333 98.50 1311 ambiguous_trans 11 ALIGNMENT 843 Y12-15d17.p1k chr15 15 1112 223936 225007 F 1098 95.08 1275 accept 0 ALIGNMENT 0 Y12-15d17.q1k chr15 886 315 594619 594618 C 572 0.00 1311 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-15d17.q1k chr11 62 87 517094 517093 F 26 0.00 1311 ambiguous_trans_ua 5 ALIGNMENT 0 Y12-15d17.q1k chr01 421 886 166163 166162 F 466 0.00 1311 ambiguous_trans 24 ALIGNMENT 269 Y12-15d17.q1k chr10 420 89 472377 472714 C 332 95.78 1311 ambiguous_trans 22 ALIGNMENT 0 Y12-15d17.q1k chr07 886 717 401767 401766 C 170 0.00 1311 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-15d17.q1k chr07 583 422 401899 401960 C 162 0.00 1311 ambiguous_trans_ua 2 ALIGNMENT 288 Y12-15d17.q1k chr07 421 88 401961 402294 C 334 97.31 1311 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-15d17.q1k chr07 886 421 535765 535764 C 466 0.00 1311 ambiguous_trans 21 ALIGNMENT 0 Y12-15d17.q1k chr13 62 88 362586 362585 F 27 0.00 1311 ambiguous_trans 10 ALIGNMENT 301 Y12-15d17.q1k chr13 89 420 362586 362917 F 332 98.80 1311 ambiguous_trans 10 ALIGNMENT 0 Y12-15d17.q1k chr08 62 108 543630 543629 F 47 0.00 1311 ambiguous_trans 19 ALIGNMENT 0 Y12-15d17.q1k chr13 886 421 189753 189752 C 466 0.00 1311 ambiguous_trans 20 ALIGNMENT 280 Y12-15d17.q1k chr13 420 109 189752 190063 C 312 98.72 1311 ambiguous_trans 20 ALIGNMENT 0 Y12-15d17.q1k chr10 88 62 472715 472714 C 27 0.00 1311 ambiguous_trans 22 ALIGNMENT 283 Y12-15d17.q1k chr13 427 109 184163 184481 C 319 98.43 1311 ambiguous_trans 8 ALIGNMENT 280 Y12-15d17.q1k chr08 109 420 543630 543941 F 312 98.72 1311 ambiguous_trans 19 ALIGNMENT 289 Y12-15d17.q1k chr02 421 89 221039 221373 C 333 97.60 1311 ambiguous_trans 13 ALIGNMENT 0 Y12-15d17.q1k chr07 62 108 823000 822999 F 47 0.00 1311 ambiguous_trans 15 ALIGNMENT 300 Y12-15d17.q1k chr07 421 88 535214 535547 C 334 98.50 1311 ambiguous_trans_ua 7 ALIGNMENT 298 Y12-15d17.q1k chr14 89 420 102192 102523 F 332 98.49 1311 ambiguous_trans 12 ALIGNMENT 0 Y12-15d17.q1k chr14 62 87 96609 96608 F 26 0.00 1311 ambiguous_trans 11 ALIGNMENT 0 Y12-15d17.q1k chr11 421 886 517426 517425 F 466 0.00 1311 ambiguous_trans_ua 5 ALIGNMENT 0 Y12-15d17.q1k chr02 108 62 265473 265472 C 47 0.00 1311 ambiguous_trans 18 ALIGNMENT 0 Y12-15d17.q1k chr07 87 62 535548 535547 C 26 0.00 1311 ambiguous_trans_ua 7 ALIGNMENT 0 Y12-15d17.q1k chr07 87 62 402295 402294 C 26 0.00 1311 ambiguous_trans_ua 2 ALIGNMENT 301 Y12-15d17.q1k chr02 420 89 226624 226955 C 332 98.80 1311 ambiguous_trans 9 ALIGNMENT 0 Y12-15d17.q1k chr11 428 886 458121 458120 F 459 0.00 1311 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-15d17.q1k chr01 62 88 165827 165826 F 27 0.00 1311 ambiguous_trans 24 ALIGNMENT 0 Y12-15d17.q1k chr07 111 62 817388 817387 C 50 0.00 1311 ambiguous_trans 26 ALIGNMENT 0 Y12-15d17.q1k chr07 886 213 817290 817289 C 674 0.00 1311 ambiguous_trans 26 ALIGNMENT 0 Y12-15d17.q1k chr02 886 422 221040 221039 C 465 0.00 1311 ambiguous_trans 13 ALIGNMENT 0 Y12-15d17.q1k chr15 886 421 600404 600403 C 466 0.00 1311 ambiguous_trans 17 ALIGNMENT 0 Y12-15d17.q1k chr07 421 886 817729 817728 F 466 0.00 1311 ambiguous_trans 16 ALIGNMENT 0 Y12-15d17.q1k chr10 886 421 472378 472377 C 466 0.00 1311 ambiguous_trans 22 ALIGNMENT 0 Y12-15d17.q1k chr07 886 422 535215 535214 C 465 0.00 1311 ambiguous_trans_ua 7 ALIGNMENT 0 Y12-15d17.q1k chr13 886 428 184164 184163 C 459 0.00 1311 ambiguous_trans 8 ALIGNMENT 283 Y12-15d17.q1k chr15 420 109 600403 600714 C 312 99.04 1311 ambiguous_trans 17 ALIGNMENT 0 Y12-15d17.q1k chr14 1000 421 96609 102548 C 580 0.00 1311 ambiguous_trans 3 ALIGNMENT 205 Y12-15d17.q1k chr01 89 420 160239 160575 F 332 89.46 1311 ambiguous_trans 23 ALIGNMENT 302 Y12-15d17.q1k chr13 88 420 357003 357335 F 333 98.80 1311 ambiguous_trans 6 ALIGNMENT 0 Y12-15d17.q1k chr08 421 886 543941 543940 F 466 0.00 1311 ambiguous_trans 19 ALIGNMENT 289 Y12-15d17.q1k chr11 85 427 457779 458121 F 343 96.79 1311 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-15d17.q1k chr02 88 62 221374 221373 C 27 0.00 1311 ambiguous_trans 13 ALIGNMENT 0 Y12-15d17.q1k chr15 886 425 594818 594817 C 462 0.00 1311 ambiguous_trans 14 ALIGNMENT 0 Y12-15d17.q1k chr13 108 62 190064 190063 C 47 0.00 1311 ambiguous_trans 20 ALIGNMENT 144 Y12-15d17.p1k chr16 506 909 53505 53905 F 404 79.70 1275 reject_low 1 ALIGNMENT 0 Y12-15d17.q1k chr14 421 886 102523 102522 F 466 0.00 1311 ambiguous_trans 12 ALIGNMENT 0 Y12-15d17.q1k chr07 88 62 536102 536101 C 27 0.00 1311 ambiguous_trans 21 ALIGNMENT 0 Y12-15d17.q1k chr13 108 62 184482 184481 C 47 0.00 1311 ambiguous_trans 8 ALIGNMENT 286 Y12-15d17.q1k chr15 424 109 594817 595132 C 316 99.05 1311 ambiguous_trans 14 ALIGNMENT 0 Y12-15d17.q1k chr02 886 421 265162 265161 C 466 0.00 1311 ambiguous_trans 18 ALIGNMENT 0 Y12-15d17.q1k chr14 62 88 102192 102191 F 27 0.00 1311 ambiguous_trans 12 ALIGNMENT 26 Y12-15d17.q1k chr14 420 391 102549 102578 C 30 96.67 1311 ambiguous_trans 3 ALIGNMENT 205 Y12-15d17.q1k chr01 89 420 165827 166163 F 332 89.46 1311 ambiguous_trans 24 ALIGNMENT 0 Y12-15d17.q1k chr07 62 108 817418 817417 F 47 0.00 1311 ambiguous_trans 16 ALIGNMENT 283 Y12-15d17.q1k chr07 109 420 817418 817729 F 312 99.04 1311 ambiguous_trans 16 ALIGNMENT 0 Y12-15d17.q1k chr07 423 886 823313 823312 F 464 0.00 1311 ambiguous_trans 15 ALIGNMENT 0 Y12-15d17.q1k chr11 62 84 457779 457778 F 23 0.00 1311 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-15d17.q1k chr02 88 62 226956 226955 C 27 0.00 1311 ambiguous_trans 9 ALIGNMENT 0 Y12-15d17.q1k chr15 108 62 600715 600714 C 47 0.00 1311 ambiguous_trans 17 ALIGNMENT 60 Y12-15d17.q1k chr07 212 112 817289 817387 C 101 89.11 1311 ambiguous_trans 26 ALIGNMENT 0 Y12-15d17.q1k chr13 421 886 357335 357334 F 466 0.00 1311 ambiguous_trans 6 ALIGNMENT 85 Y12-15d17.q1k chr15 314 173 594618 594759 C 142 89.44 1311 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-15d17.q1k chr15 108 62 595133 595132 C 47 0.00 1311 ambiguous_trans 14 ALIGNMENT 0 Y12-15d17.q1k chr13 62 87 357003 357002 F 26 0.00 1311 ambiguous_trans 6 ALIGNMENT 0 Y12-15d17.q1k chr01 62 88 160239 160238 F 27 0.00 1311 ambiguous_trans 23 ALIGNMENT 70 Y12-15d17.q1k chr07 716 584 401766 401898 C 133 85.71 1311 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-15d17.q1k chr14 421 886 96941 96940 F 466 0.00 1311 ambiguous_trans 11 ALIGNMENT 285 Y12-15d17.q1k chr07 109 422 823000 823313 F 314 99.04 1311 ambiguous_trans 15 ALIGNMENT 0 Y12-15d17.q1k chr14 390 62 102579 102578 C 329 0.00 1311 ambiguous_trans 3 ALIGNMENT 302 Y12-15d17.q1k chr11 88 420 517094 517426 F 333 98.80 1311 ambiguous_trans_ua 5 ALIGNMENT 0 Y12-15d17.q1k chr01 421 886 160575 160574 F 466 0.00 1311 ambiguous_trans 23 ALIGNMENT 47 Y12-15d17.q1k chr14 1145 1001 96467 96608 C 145 80.00 1311 ambiguous_trans 3 ALIGNMENT 0 Y12-15d17.p1k chr16 62 505 53505 53504 F 444 0.00 1275 reject_low 1 ALIGNMENT 0 Y12-15d17.q1k chr13 421 886 362917 362916 F 466 0.00 1311 ambiguous_trans 10 ALIGNMENT 991 Y12-15d18.q1k chr02 34 1228 293175 294378 F 1195 95.31 1307 accept 0 ALIGNMENT 1038 Y12-15d18.p1k chr02 1212 20 298317 299507 C 1193 96.48 1217 accept 0 ALIGNMENT 0 Y12-15d20.p1k chr07 188 62 1089384 1089383 C 127 0.00 1195 reject_low 51 ALIGNMENT 576 Y12-15d20.p1k chr12 1119 117 1075669 1076678 C 1003 86.64 1195 reject_low 6 ALIGNMENT 0 Y12-15d20.p1k chr16 249 62 946495 946494 C 188 0.00 1195 reject_low 147 ALIGNMENT 0 Y12-15d20.p1k chr16 62 332 1494 1493 F 271 0.00 1195 reject_low 214 ALIGNMENT 42 Y12-15d20.p1k chr12 10 98 7661 7750 F 89 83.15 1195 reject_low 141 ALIGNMENT 0 Y12-15d20.p1k chr06 409 761 1267 1266 F 353 0.00 1195 reject_low 221 ALIGNMENT 0 Y12-15d20.p1k chr06 62 140 892 891 F 79 0.00 1195 reject_low 11 ALIGNMENT 0 Y12-15d20.q1k chr16 116 108 5328 5353 C 9 0.00 1294 reject_low 9 ALIGNMENT 0 Y12-15d20.p1k chr05 761 351 574894 574893 C 411 0.00 1195 reject_low 159 ALIGNMENT 0 Y12-15d20.p1k chr10 373 761 2367 2366 F 389 0.00 1195 reject_low 121 ALIGNMENT 0 Y12-15d20.p1k chr07 761 315 1088971 1088970 C 447 0.00 1195 reject_low 30 ALIGNMENT 0 Y12-15d20.p1k chr16 761 279 945963 945962 C 483 0.00 1195 reject_low 107 ALIGNMENT 25 Y12-15d20.p1k chr02 385 443 2365 2423 F 59 81.36 1195 reject_low 322 ALIGNMENT 0 Y12-15d20.p1k chr02 459 761 2414 2413 F 303 0.00 1195 reject_low 239 ALIGNMENT 0 Y12-15d20.p1k chr14 62 116 1585 1584 F 55 0.00 1195 reject_low 8 ALIGNMENT 30 Y12-15d20.p1k chr15 510 333 1089465 1089642 C 178 73.03 1195 reject_low 83 ALIGNMENT 0 Y12-15d20.p1k chr16 62 224 1494 1493 F 163 0.00 1195 reject_low 201 ALIGNMENT 0 Y12-15d20.p1k chr05 761 515 574982 574981 C 247 0.00 1195 reject_low 164 ALIGNMENT 90 Y12-15d20.p1k chr13 225 510 1678 1963 F 286 77.97 1195 reject_low 275 ALIGNMENT 174 Y12-15d20.p1k chr12 45 514 1694 2163 F 470 79.79 1195 reject_low 92 ALIGNMENT 0 Y12-15d20.p1k chr15 224 62 1089643 1089642 C 163 0.00 1195 reject_low 68 ALIGNMENT 79 Y12-15d20.p1k chr10 227 514 1718 2005 F 288 76.74 1195 reject_low 131 ALIGNMENT 119 Y12-15d20.p1k chr16 514 69 946050 946495 C 446 76.46 1195 reject_low 128 ALIGNMENT 0 Y12-15d20.q1k chr14 116 108 5419 5444 C 9 0.00 1294 reject_low 8 ALIGNMENT 75 Y12-15d20.p1k chr12 250 495 1683 1928 F 246 77.64 1195 reject_low 137 ALIGNMENT 147 Y12-15d20.p1k chr13 47 314 1824 2091 F 268 85.82 1195 reject_low 237 ALIGNMENT 72 Y12-15d20.p1k chr12 225 510 1694 1979 F 286 75.87 1195 reject_low 138 ALIGNMENT 0 Y12-15d20.p1k chr12 384 104 1069652 1069632 C 281 0.00 1195 reject_low 193 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 2019 2018 F 247 0.00 1195 reject_low 130 ALIGNMENT 42 Y12-15d20.p1k chr14 297 514 1585 1802 F 218 73.85 1195 reject_low 209 ALIGNMENT 0 Y12-15d20.p1k chr14 315 761 1998 1997 F 447 0.00 1195 reject_low 184 ALIGNMENT 90 Y12-15d20.p1k chr12 510 225 1069730 1070015 C 286 77.97 1195|0,9 reject_low 171 ALIGNMENT 0 Y12-15d20.p1k chr04 332 62 1530478 1530477 C 271 0.00 1195 reject_low 82 ALIGNMENT 0 Y12-15d20.p1k chr12 351 761 7750 7749 F 411 0.00 1195 reject_low 106 ALIGNMENT 138 Y12-15d20.p1k chr12 9 458 1765 2215 F 450 77.78 1195 reject_low 105 ALIGNMENT 0 Y12-15d20.p1k chr12 385 761 7748 7747 F 377 0.00 1195 reject_low 20 ALIGNMENT 0 Y12-15d20.p1k chr06 515 761 1085 1084 F 247 0.00 1195 reject_low 291 ALIGNMENT 0 Y12-15d20.p1k chr12 233 234 1070007 1076273 C 0 0.00 1195 reject_low 171 ALIGNMENT 20 Y12-15d20.q1k chr04 1199 1249 1527700 1527747 F 51 84.31 1294 reject_low 3,24,34,38,45,47,53,57,61,63,65,67,71,78,80,82,202 ALIGNMENT 117 Y12-15d20.p1k chr16 10 206 1710 1907 F 197 87.31 1195 reject_low 189 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1076462 1076461 C 247 0.00 1195 reject_low 74 ALIGNMENT 0 Y12-15d20.p1k chr15 761 511 1089358 1089357 C 251 0.00 1195 reject_low 68 ALIGNMENT 117 Y12-15d20.p1k chr13 10 206 1894 2091 F 197 87.31 1195 reject_low 245 ALIGNMENT 140 Y12-15d20.p1k chr13 47 350 1788 2091 F 304 82.89 1195 reject_low 240 ALIGNMENT 82 Y12-15d20.p1k chr13 250 514 1667 1931 F 265 77.74 1195 reject_low 278 ALIGNMENT 118 Y12-15d20.p1k chr15 458 45 1089229 1089642 C 414 77.05 1195 reject_low 58 ALIGNMENT 161 Y12-15d20.p1k chr12 16 278 7488 7750 F 263 87.83 1195 reject_low 93 ALIGNMENT 0 Y12-15d20.p1k chr12 116 104 1070016 1076295 C 13 0.00 1195 reject_low 10 ALIGNMENT 252 Y12-15d20.p1k chr16 384 9 945964 946340 C 376 89.89 1195 reject_low 21 ALIGNMENT 140 Y12-15d20.p1k chr16 47 350 1604 1907 F 304 82.89 1195 reject_low 187 ALIGNMENT 0 Y12-15d20.p1k chr10 62 254 1710 1709 F 193 0.00 1195 reject_low 133 ALIGNMENT 90 Y12-15d20.p1k chr16 225 510 1494 1779 F 286 77.97 1195 reject_low 201 ALIGNMENT 0 Y12-15d20.p1k chr02 511 761 2178 2177 F 251 0.00 1195 reject_low 217 ALIGNMENT 0 Y12-15d20.p1k chr05 515 761 1914 1913 F 247 0.00 1195 reject_low 248 ALIGNMENT 82 Y12-15d20.p1k chr12 514 250 1069762 1070026 C 265 77.74 1195 reject_low 178 ALIGNMENT 90 Y12-15d20.p1k chr12 510 225 1076393 1076678 C 286 77.97 1195 reject_low 56 ALIGNMENT 0 Y12-15d20.q1k chr09 862 108 5835 5834 C 755 0.00 1294 reject_low 88,90,94,100,104,110,117,120,126,129,132,135,139,145,149,317 ALIGNMENT 0 Y12-15d20.p1k chr02 99 761 2414 2413 F 663 0.00 1195 reject_low 292 ALIGNMENT 83 Y12-15d20.p1k chr02 9 170 2252 2414 F 162 84.57 1195 reject_low 268 ALIGNMENT 121 Y12-15d20.p1k chr05 458 45 574893 575306 C 414 77.29 1195 reject_low 161 ALIGNMENT 227 Y12-15d20.p1k chr05 384 10 574895 575270 C 375 87.73 1195 reject_low 152 ALIGNMENT 71 Y12-15d20.p1k chr08 10 103 1806 1900 F 94 92.55 1195 reject_low 274 ALIGNMENT 96 Y12-15d20.p1k chr13 189 514 1678 2003 F 326 77.30 1195 reject_low 271 ALIGNMENT 0 Y12-15d20.q1k chr13 116 108 4345 4370 C 9 0.00 1294 reject_low 12 ALIGNMENT 69 Y12-15d20.p1k chr08 297 514 1662 1879 F 218 77.98 1195 reject_low 286 ALIGNMENT 130 Y12-15d20.p1k chr08 69 356 1650 1937 F 288 82.64 1195 reject_low 249 ALIGNMENT 0 Y12-15d20.p1k chr02 62 188 1497 1496 F 127 0.00 1195 reject_low 281 ALIGNMENT 0 Y12-15d20.p1k chr05 515 761 1662 1661 F 247 0.00 1195 reject_low 304 ALIGNMENT 0 Y12-15d20.p1k chr10 511 761 2073 2072 F 251 0.00 1195 reject_low 127 ALIGNMENT 0 Y12-15d20.p1k chr16 761 515 946123 946122 C 247 0.00 1195 reject_low 119 ALIGNMENT 0 Y12-15d20.p1k chr09 515 761 2022 2021 F 247 0.00 1195 reject_low 132 ALIGNMENT 96 Y12-15d20.p1k chr14 189 514 1585 1910 F 326 77.30 1195 reject_low 198 ALIGNMENT 0 Y12-15d20.p1k chr10 118 117 2365 2292 F 0 0.00 1195 reject_low 318 ALIGNMENT 0 Y12-15d20.p1k chr12 332 99 1070016 1076264 C 234 0.00 1195 reject_low 204 ALIGNMENT 42 Y12-15d20.p1k chr02 10 98 2325 2414 F 89 83.15 1195 reject_low 292 ALIGNMENT 115 Y12-15d20.p1k chr12 514 141 1069654 1070027 C 374 77.81 1195 reject_low 176 ALIGNMENT 0 Y12-15d20.p1k chr02 62 116 1497 1496 F 55 0.00 1195 reject_low 238 ALIGNMENT 118 Y12-15d20.p1k chr05 514 141 574945 575318 C 374 78.07 1195 reject_low 162 ALIGNMENT 72 Y12-15d20.p1k chr12 103 9 1069633 1069728 C 95 92.63 1195 reject_low 193 ALIGNMENT 144 Y12-15d20.p1k chr12 10 350 1874 2215 F 341 81.52 1195|0,9 reject_low 313 ALIGNMENT 0 Y12-15d20.p1k chr09 519 761 2326 2325 F 243 0.00 1195 reject_low 90 ALIGNMENT 0 Y12-15d20.q1k chr08 862 575 3744 3743 C 288 0.00 1294 reject_low 17 ALIGNMENT 0 Y12-15d20.p1k chr02 62 140 1485 1484 F 79 0.00 1195 reject_low 241 ALIGNMENT 0 Y12-15d20.p1k chr04 761 243 1530065 1530064 C 519 0.00 1195 reject_low 38 ALIGNMENT 42 Y12-15d20.p1k chr04 98 10 1530064 1530153 C 89 83.15 1195 reject_low 78 ALIGNMENT 0 Y12-15d20.p1k chr13 515 761 1895 1894 F 247 0.00 1195 reject_low 301 ALIGNMENT 0 Y12-15d20.q1k chr04 108 116 1526618 1526643 F 9 0.00 1294 reject_low 3 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1069691 1069690 C 247 0.00 1195 reject_low 174 ALIGNMENT 81 Y12-15d20.p1k chr08 510 225 560545 560830 C 286 76.92 1195 reject_low 280 ALIGNMENT 0 Y12-15d20.p1k chr05 761 279 574894 574893 C 483 0.00 1195 reject_low 156 ALIGNMENT 0 Y12-15d20.p1k chr10 335 761 2365 2364 F 427 0.00 1195 reject_low 111 ALIGNMENT 145 Y12-15d20.p1k chr02 10 278 2145 2414 F 269 85.50 1195 reject_low 231 ALIGNMENT 224 Y12-15d20.p1k chr12 384 10 1069604 1069979 C 375 87.47 1195 reject_low 23 ALIGNMENT 147 Y12-15d20.p1k chr07 314 47 1088970 1089237 C 268 85.82 1195 reject_low 30 ALIGNMENT 0 Y12-15d20.p1k chr09 409 761 2384 2383 F 353 0.00 1195 reject_low 94 ALIGNMENT 84 Y12-15d20.p1k chr05 225 504 1481 1760 F 280 77.50 1195 reject_low 276 ALIGNMENT 47 Y12-15d20.q1k chr15 61 107 1085736 1085782 F 47 100.00 1294 reject_low 4,25,35,39,46,48,54,58,62,64,66,68,72,79,81,83,203 ALIGNMENT 0 Y12-15d20.p1k chr04 188 62 1530478 1530477 C 127 0.00 1195 reject_low 63 ALIGNMENT 105 Y12-15d20.p1k chr09 9 258 2128 2378 F 250 81.60 1195 reject_low 117 ALIGNMENT 0 Y12-15d20.p1k chr05 761 515 574946 574945 C 247 0.00 1195 reject_low 162 ALIGNMENT 0 Y12-15d20.p1k chr05 761 511 575130 575129 C 251 0.00 1195 reject_low 169 ALIGNMENT 147 Y12-15d20.p1k chr05 314 47 574893 575160 C 268 85.82 1195 reject_low 158 ALIGNMENT 118 Y12-15d20.p1k chr16 141 514 1482 1855 F 374 78.07 1195 reject_low 195 ALIGNMENT 0 Y12-15d20.p1k chr16 385 761 1905 1904 F 377 0.00 1195 reject_low 173 ALIGNMENT 110 Y12-15d20.p1k chr09 10 372 2021 2384 F 363 77.69 1195 reject_low 120 ALIGNMENT 118 Y12-15d20.p1k chr12 458 45 1069602 1070015 C 414 77.05 1195 reject_low 42 ALIGNMENT 0 Y12-15d20.p1k chr13 243 761 2091 2090 F 519 0.00 1195 reject_low 229 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 2127 2126 F 247 0.00 1195 reject_low 115 ALIGNMENT 0 Y12-15d20.p1k chr16 62 249 1483 1482 F 188 0.00 1195 reject_low 206 ALIGNMENT 0 Y12-15d20.p1k chr06 62 249 893 892 F 188 0.00 1195 reject_low 261 ALIGNMENT 0 Y12-15d20.p1k chr16 761 515 946051 946050 C 247 0.00 1195 reject_low 128 ALIGNMENT 0 Y12-15d20.p1k chr12 116 62 1076679 1076678 C 55 0.00 1195 reject_low 6 ALIGNMENT 0 Y12-15d20.p1k chr08 89 761 1921 1920 F 673 0.00 1195 reject_low 295 ALIGNMENT 85 Y12-15d20.p1k chr07 170 10 1088970 1089131 C 161 85.09 1195 reject_low 50 ALIGNMENT 25 Y12-15d20.p1k chr15 443 385 1089220 1089278 C 59 81.36 1195 reject_low 203 ALIGNMENT 25 Y12-15d20.p1k chr12 443 385 1076256 1076314 C 59 81.36 1195 reject_low 77 ALIGNMENT 42 Y12-15d20.p1k chr12 514 297 1076461 1076678 C 218 73.85 1195 reject_low 74 ALIGNMENT 0 Y12-15d20.p1k chr07 761 515 1089059 1089058 C 247 0.00 1195 reject_low 51 ALIGNMENT 0 Y12-15d20.p1k chr08 761 444 560409 560408 C 318 0.00 1195 reject_low 323 ALIGNMENT 0 Y12-15d20.p1k chr05 62 224 1481 1480 F 163 0.00 1195 reject_low 276 ALIGNMENT 0 Y12-15d20.p1k chr15 761 385 1089232 1089231 C 377 0.00 1195 reject_low 25 ALIGNMENT 0 Y12-15d20.p1k chr15 761 315 1089230 1089229 C 447 0.00 1195 reject_low 46 ALIGNMENT 45 Y12-15d20.p1k chr06 395 510 894 1009 F 116 80.17 1195 reject_low 296 ALIGNMENT 0 Y12-15d20.q1k chr06 862 573 3051 3050 C 290 0.00 1294 reject_low 11 ALIGNMENT 0 Y12-15d20.p1k chr13 515 761 1931 1930 F 247 0.00 1195 reject_low 278 ALIGNMENT 0 Y12-15d20.p1k chr15 384 104 1089279 1089259 C 281 0.00 1195 reject_low 203 ALIGNMENT 0 Y12-15d20.p1k chr07 761 171 1088971 1088970 C 591 0.00 1195 reject_low 50 ALIGNMENT 46 Y12-15d20.p1k chr12 333 514 1694 1875 F 182 75.82 1195 reject_low 144 ALIGNMENT 0 Y12-15d20.p1k chr16 515 761 1711 1710 F 247 0.00 1195 reject_low 210 ALIGNMENT 0 Y12-15d20.p1k chr08 384 104 560467 560447 C 281 0.00 1195 reject_low 323 ALIGNMENT 99 Y12-15d20.p1k chr12 514 189 1076353 1076678 C 326 77.61 1195 reject_low 49 ALIGNMENT 0 Y12-15d20.p1k chr05 296 62 575307 575306 C 235 0.00 1195 reject_low 168 ALIGNMENT 0 Y12-15d20.p1k chr05 761 171 574894 574893 C 591 0.00 1195 reject_low 163 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 1858 1857 F 247 0.00 1195 reject_low 241 ALIGNMENT 39 Y12-15d20.p1k chr08 16 88 1849 1921 F 73 84.93 1195 reject_low 295 ALIGNMENT 0 Y12-15d20.p1k chr13 515 761 2003 2002 F 247 0.00 1195 reject_low 271 ALIGNMENT 0 Y12-15d20.p1k chr12 99 296 2216 7336 F 198 0.00 1195 reject_low 315 ALIGNMENT 0 Y12-15d20.p1k chr06 62 394 894 893 F 333 0.00 1195 reject_low 296 ALIGNMENT 0 Y12-15d20.p1k chr16 62 296 1494 1493 F 235 0.00 1195 reject_low 210 ALIGNMENT 106 Y12-15d20.p1k chr08 189 463 1662 1936 F 275 80.36 1195 reject_low 266 ALIGNMENT 42 Y12-15d20.p1k chr08 514 297 560613 560830 C 218 73.85 1195 reject_low 300 ALIGNMENT 118 Y12-15d20.p1k chr08 514 141 560469 560842 C 374 78.07 1195 reject_low 258 ALIGNMENT 115 Y12-15d20.p1k chr12 514 141 1076317 1076690 C 374 77.81 1195 reject_low 44 ALIGNMENT 0 Y12-15d20.p1k chr09 191 761 2382 2381 F 571 0.00 1195 reject_low 317 ALIGNMENT 0 Y12-15d20.p1k chr12 104 116 2185 7336 F 13 0.00 1195 reject_low 18 ALIGNMENT 0 Y12-15d20.p1k chr12 384 62 1076315 1076314 C 323 0.00 1195 reject_low 77 ALIGNMENT 0 Y12-15d20.p1k chr12 305 306 1070007 1076273 C 0 0.00 1195 reject_low 177 ALIGNMENT 0 Y12-15d20.p1k chr12 296 62 1076679 1076678 C 235 0.00 1195 reject_low 74 ALIGNMENT 82 Y12-15d20.p1k chr12 250 514 7326 7590 F 265 77.74 1195 reject_low 312 ALIGNMENT 102 Y12-15d20.p1k chr05 189 514 1481 1806 F 326 77.91 1195 reject_low 265 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 7590 7589 F 247 0.00 1195 reject_low 312 ALIGNMENT 137 Y12-15d20.p1k chr12 350 47 1069602 1069905 C 304 82.57 1195 reject_low 33 ALIGNMENT 25 Y12-15d20.p1k chr12 385 443 2166 2224 F 59 81.36 1195 reject_low 151 ALIGNMENT 42 Y12-15d20.p1k chr16 297 514 1494 1711 F 218 73.85 1195 reject_low 210 ALIGNMENT 93 Y12-15d20.p1k chr10 191 510 1718 2037 F 320 77.19 1195 reject_low 125 ALIGNMENT 0 Y12-15d20.p1k chr12 511 761 1907 1906 F 251 0.00 1195 reject_low 134 ALIGNMENT 0 Y12-15d20.p1k chr12 511 761 1979 1978 F 251 0.00 1195 reject_low 138 ALIGNMENT 0 Y12-15d20.p1k chr12 198 197 2207 7345 F 0 0.00 1195 reject_low 308 ALIGNMENT 115 Y12-15d20.p1k chr15 514 141 1089281 1089654 C 374 77.81 1195 reject_low 62 ALIGNMENT 0 Y12-15d20.p1k chr05 517 761 1952 1951 F 245 0.00 1195 reject_low 236 ALIGNMENT 82 Y12-15d20.p1k chr12 170 10 1076265 1076426 C 161 84.47 1195 reject_low 178 ALIGNMENT 140 Y12-15d20.p1k chr05 350 47 574893 575196 C 304 82.89 1195 reject_low 159 ALIGNMENT 0 Y12-15d20.p1k chr02 511 761 2250 2249 F 251 0.00 1195 reject_low 85 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 7554 7553 F 247 0.00 1195 reject_low 310,311,315 ALIGNMENT 0 Y12-15d20.p1k chr08 761 315 560418 560417 C 447 0.00 1195 reject_low 251 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 2362 2361 F 247 0.00 1195 reject_low 212 ALIGNMENT 0 Y12-15d20.p1k chr05 761 515 575054 575053 C 247 0.00 1195 reject_low 166 ALIGNMENT 145 Y12-15d20.p1k chr05 45 516 1481 1952 F 472 77.75 1195 reject_low 236 ALIGNMENT 0 Y12-15d20.p1k chr02 62 249 1486 1485 F 188 0.00 1195 reject_low 288 ALIGNMENT 0 Y12-15d20.p1k chr16 761 515 946303 946302 C 247 0.00 1195 reject_low 154 ALIGNMENT 0 Y12-15d20.p1k chr09 118 117 2382 2309 F 0 0.00 1195 reject_low 317 ALIGNMENT 0 Y12-15d20.p1k chr04 140 62 1530490 1530489 C 79 0.00 1195 reject_low 61 ALIGNMENT 121 Y12-15d20.p1k chr14 45 458 1585 1998 F 414 77.29 1195 reject_low 191 ALIGNMENT 140 Y12-15d20.p1k chr07 350 47 1088970 1089273 C 304 82.89 1195 reject_low 32 ALIGNMENT 0 Y12-15d20.p1k chr16 761 496 946250 946249 C 266 0.00 1195 reject_low 147 ALIGNMENT 0 Y12-15d20.p1k chr16 224 62 946484 946483 C 163 0.00 1195 reject_low 148 ALIGNMENT 0 Y12-15d20.p1k chr05 761 99 574894 574893 C 663 0.00 1195 reject_low 167 ALIGNMENT 0 Y12-15d20.p1k chr04 249 62 1530489 1530488 C 188 0.00 1195 reject_low 71 ALIGNMENT 0 Y12-15d20.p1k chr06 227 761 1265 1264 F 535 0.00 1195 reject_low 285 ALIGNMENT 0 Y12-15d20.p1k chr07 761 515 1089167 1089166 C 247 0.00 1195 reject_low 73 ALIGNMENT 0 Y12-15d20.q1k chr12 108 862 1072818 1072817 F 755 0.00 1294 reject_low 155 ALIGNMENT 90 Y12-15d20.p1k chr07 510 225 1089098 1089383 C 286 77.97 1195 reject_low 55 ALIGNMENT 0 Y12-15d20.p1k chr10 62 298 1718 1717 F 237 0.00 1195 reject_low 142 ALIGNMENT 0 Y12-15d20.p1k chr16 104 384 1877 1857 F 281 0.00 1195 reject_low 321 ALIGNMENT 83 Y12-15d20.p1k chr08 170 9 560417 560579 C 162 84.57 1195 reject_low 269 ALIGNMENT 0 Y12-15d20.p1k chr12 761 444 1076257 1076256 C 318 0.00 1195 reject_low 77 ALIGNMENT 0 Y12-15d20.p1k chr16 296 62 946484 946483 C 235 0.00 1195 reject_low 146 ALIGNMENT 161 Y12-15d20.p1k chr16 16 278 1645 1907 F 263 87.83 1195 reject_low 180 ALIGNMENT 0 Y12-15d20.p1k chr06 191 761 1265 1264 F 571 0.00 1195 reject_low 302 ALIGNMENT 118 Y12-15d20.p1k chr13 141 514 1666 2039 F 374 78.07 1195 reject_low 259 ALIGNMENT 144 Y12-15d20.p1k chr12 314 47 1069602 1069869 C 268 85.45 1195 reject_low 31 ALIGNMENT 0 Y12-15d20.p1k chr06 62 320 892 891 F 259 0.00 1195 reject_low 291 ALIGNMENT 0 Y12-15d20.p1k chr08 761 279 560418 560417 C 483 0.00 1195 reject_low 235 ALIGNMENT 0 Y12-15d20.p1k chr14 515 761 1910 1909 F 247 0.00 1195 reject_low 198 ALIGNMENT 0 Y12-15d20.p1k chr09 511 761 1982 1981 F 251 0.00 1195 reject_low 139 ALIGNMENT 144 Y12-15d20.p1k chr07 242 9 1088970 1089204 C 234 88.03 1195 reject_low 28 ALIGNMENT 0 Y12-15d20.p1k chr12 761 385 1069605 1069604 C 377 0.00 1195 reject_low 23 ALIGNMENT 227 Y12-15d20.p1k chr14 10 384 1621 1996 F 375 87.73 1195 reject_low 172 ALIGNMENT 0 Y12-15d20.p1k chr16 384 104 946012 945992 C 281 0.00 1195 reject_low 316 ALIGNMENT 82 Y12-15d20.p1k chr15 170 10 1089229 1089390 C 161 84.47 1195 reject_low 66 ALIGNMENT 42 Y12-15d20.p1k chr15 514 297 1089425 1089642 C 218 73.85 1195 reject_low 81 ALIGNMENT 0 Y12-15d20.q1k chr16 575 862 944166 944165 F 288 0.00 1294 reject_low 16,21 ALIGNMENT 0 Y12-15d20.p1k chr10 511 761 2037 2036 F 251 0.00 1195 reject_low 125 ALIGNMENT 0 Y12-15d20.p1k chr02 517 761 2004 2003 F 245 0.00 1195 reject_low 219 ALIGNMENT 72 Y12-15d20.p1k chr15 103 9 1089260 1089355 C 95 92.63 1195 reject_low 203 ALIGNMENT 144 Y12-15d20.p1k chr14 9 242 1764 1998 F 234 88.03 1195 reject_low 182 ALIGNMENT 0 Y12-15d20.p1k chr12 249 62 1076690 1076689 C 188 0.00 1195 reject_low 60 ALIGNMENT 42 Y12-15d20.p1k chr12 514 297 1069798 1070015 C 218 73.85 1195|0,9 reject_low 175,177 ALIGNMENT 48 Y12-15d20.q1k chr12 60 107 1066219 1066266 F 48 100.00 1294 reject_low 6,10,23,27,29,31,33,37,42,43,44,49,52,56,60,70,74,76,77,170,171,174,175,176,177,178,181,193,204 ALIGNMENT 0 Y12-15d20.p1k chr09 511 761 2126 2125 F 251 0.00 1195 reject_low 104 ALIGNMENT 619 Y12-15d20.p1k chr16 1119 9 945366 946484 C 1111 86.05 1195 reject_low 16 ALIGNMENT 38 Y12-15d20.p1k chr06 440 514 903 977 F 75 84.00 1195 reject_low 299 ALIGNMENT 42 Y12-15d20.p1k chr16 98 10 945962 946051 C 89 83.15 1195 reject_low 153 ALIGNMENT 75 Y12-15d20.p1k chr14 9 103 1872 1967 F 95 93.68 1195 reject_low 320 ALIGNMENT 0 Y12-15d20.p1k chr02 444 761 2423 2422 F 318 0.00 1195 reject_low 322 ALIGNMENT 118 Y12-15d20.p1k chr14 141 514 1573 1946 F 374 78.07 1195 reject_low 194 ALIGNMENT 582 Y12-15d20.p1k chr12 117 1119 7337 8346 F 1003 86.84 1195 reject_low 18 ALIGNMENT 0 Y12-15d20.p1k chr12 171 249 2216 7325 F 79 0.00 1195 reject_low 312 ALIGNMENT 0 Y12-15d20.p1k chr10 515 761 1933 1932 F 247 0.00 1195 reject_low 142 ALIGNMENT 42 Y12-15d20.p1k chr14 10 98 1909 1998 F 89 83.15 1195 reject_low 207 ALIGNMENT 0 Y12-15d20.p1k chr04 761 515 1530153 1530152 C 247 0.00 1195 reject_low 63 ALIGNMENT 72 Y12-15d20.p1k chr04 103 9 1530095 1530190 C 95 92.63 1195 reject_low 202 ALIGNMENT 42 Y12-15d20.p1k chr05 98 10 574893 574982 C 89 83.15 1195 reject_low 167 ALIGNMENT 140 Y12-15d20.p1k chr12 47 350 7447 7750 F 304 82.89 1195 reject_low 106 ALIGNMENT 0 Y12-15d20.p1k chr08 519 761 1847 1846 F 243 0.00 1195 reject_low 284 ALIGNMENT 178 Y12-15d20.p1k chr10 9 518 1787 2309 F 510 79.61 1195 reject_low 91 ALIGNMENT 0 Y12-15d20.p1k chr10 191 761 2365 2364 F 571 0.00 1195 reject_low 318 ALIGNMENT 85 Y12-15d20.p1k chr13 10 170 1930 2091 F 161 85.09 1195 reject_low 267 ALIGNMENT 78 Y12-15d20.p1k chr02 189 514 1497 1822 F 326 75.46 1195 reject_low 281 ALIGNMENT 120 Y12-15d20.p1k chr09 16 334 2064 2382 F 319 79.94 1195 reject_low 110 ALIGNMENT 825 Y12-15d20.p1k chr10 9 1119 1859 2965 F 1111 92.26 1195 reject_low 2 ALIGNMENT 202 Y12-15d20.p1k chr10 45 516 1752 2223 F 472 81.78 1195 reject_low 89 ALIGNMENT 0 Y12-15d20.p1k chr05 384 104 574943 574923 C 281 0.00 1195 reject_low 319 ALIGNMENT 0 Y12-15d20.p1k chr05 62 188 1481 1480 F 127 0.00 1195 reject_low 265 ALIGNMENT 93 Y12-15d20.p1k chr02 10 206 2217 2414 F 197 83.25 1195 reject_low 263 ALIGNMENT 0 Y12-15d20.p1k chr12 761 351 1069603 1069602 C 411 0.00 1195 reject_low 33 ALIGNMENT 0 Y12-15d20.p1k chr10 100 761 2286 2285 F 662 0.00 1195 reject_low 150 ALIGNMENT 75 Y12-15d20.p1k chr16 510 225 946198 946483 C 286 76.22 1195 reject_low 148 ALIGNMENT 85 Y12-15d20.p1k chr12 10 170 2054 2215 F 161 85.09 1195 reject_low 312 ALIGNMENT 0 Y12-15d20.q1k chr16 108 116 943682 943707 F 9 0.00 1294 reject_low 16,21 ALIGNMENT 0 Y12-15d20.p1k chr08 62 296 1662 1661 F 235 0.00 1195 reject_low 286 ALIGNMENT 0 Y12-15d20.p1k chr16 511 761 1779 1778 F 251 0.00 1195 reject_low 201 ALIGNMENT 47 Y12-15d20.q1k chr06 107 61 3533 3579 C 47 100.00 1294 reject_low 11 ALIGNMENT 0 Y12-15d20.p1k chr05 511 761 1694 1693 F 251 0.00 1195 reject_low 290 ALIGNMENT 0 Y12-15d20.p1k chr06 515 761 977 976 F 247 0.00 1195 reject_low 299 ALIGNMENT 0 Y12-15d20.p1k chr12 207 761 7750 7749 F 555 0.00 1195 reject_low 108 ALIGNMENT 0 Y12-15d20.p1k chr12 62 224 1694 1693 F 163 0.00 1195 reject_low 138 ALIGNMENT 0 Y12-15d20.p1k chr12 140 104 1070028 1076295 C 37 0.00 1195 reject_low 176 ALIGNMENT 116 Y12-15d20.p1k chr08 10 248 1698 1937 F 239 83.68 1195 reject_low 247 ALIGNMENT 0 Y12-15d20.p1k chr14 62 249 1574 1573 F 188 0.00 1195 reject_low 205 ALIGNMENT 0 Y12-15d20.p1k chr02 62 332 1497 1496 F 271 0.00 1195 reject_low 303 ALIGNMENT 0 Y12-15d20.p1k chr12 459 761 2215 2214 F 303 0.00 1195 reject_low 105 ALIGNMENT 144 Y12-15d20.p1k chr05 242 9 574893 575127 C 234 88.03 1195 reject_low 157 ALIGNMENT 0 Y12-15d20.p1k chr10 515 761 2005 2004 F 247 0.00 1195 reject_low 131 ALIGNMENT 0 Y12-15d20.q1k chr16 108 862 943681 943680 F 755 0.00 1294 reject_low 99,107,109,112,114,116,119,122,124,128,140,143,146,147,148,153,154,316 ALIGNMENT 68 Y12-15d20.p1k chr10 10 226 2148 2365 F 217 77.88 1195 reject_low 136 ALIGNMENT 0 Y12-15d20.p1k chr08 515 761 1879 1878 F 247 0.00 1195 reject_low 286 ALIGNMENT 0 Y12-15d20.p1k chr15 296 62 1089643 1089642 C 235 0.00 1195 reject_low 81 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1076426 1076425 C 247 0.00 1195 reject_low 60 ALIGNMENT 0 Y12-15d20.p1k chr02 511 761 2034 2033 F 251 0.00 1195 reject_low 218 ALIGNMENT 20 Y12-15d20.q1k chr12 1199 1249 1067238 1067285 F 51 84.31 1294 reject_low 10,23,27,29,31,33,37,42,43,44,49,52,56,60,70,74,76,77,170,171,174,175,176,177,178,181,193,204 ALIGNMENT 0 Y12-15d20.p1k chr14 515 761 1802 1801 F 247 0.00 1195 reject_low 209 ALIGNMENT 0 Y12-15d20.p1k chr04 761 515 1530261 1530260 C 247 0.00 1195 reject_low 80 ALIGNMENT 0 Y12-15d20.p1k chr12 761 171 1069603 1069602 C 591 0.00 1195 reject_low 52 ALIGNMENT 249 Y12-15d20.p1k chr12 9 384 1837 2213 F 376 89.63 1195 reject_low 19 ALIGNMENT 0 Y12-15d20.p1k chr12 62 116 1694 1693 F 55 0.00 1195 reject_low 101 ALIGNMENT 75 Y12-15d20.p1k chr08 103 9 560448 560543 C 95 93.68 1195 reject_low 323 ALIGNMENT 0 Y12-15d20.p1k chr15 761 459 1089230 1089229 C 303 0.00 1195 reject_low 58 ALIGNMENT 0 Y12-15d20.p1k chr04 761 99 1530065 1530064 C 663 0.00 1195 reject_low 78 ALIGNMENT 82 Y12-15d20.p1k chr15 514 250 1089389 1089653 C 265 77.74 1195 reject_low 72 ALIGNMENT 0 Y12-15d20.p1k chr06 517 761 1159 1158 F 245 0.00 1195 reject_low 261 ALIGNMENT 102 Y12-15d20.p1k chr05 9 226 1840 2058 F 218 83.03 1195 reject_low 262 ALIGNMENT 0 Y12-15d20.p1k chr08 249 62 560842 560841 C 188 0.00 1195 reject_low 277 ALIGNMENT 0 Y12-15d20.p1k chr13 171 761 2091 2090 F 591 0.00 1195 reject_low 267 ALIGNMENT 846 Y12-15d20.q1k chr16 1103 117 4350 5327 C 987 96.15 1294 reject_low 9 ALIGNMENT 147 Y12-15d20.p1k chr16 350 10 945962 946303 C 341 81.82 1195 reject_low 114 ALIGNMENT 0 Y12-15d20.p1k chr13 104 384 2061 2041 F 281 0.00 1195 reject_low 324 ALIGNMENT 0 Y12-15d20.p1k chr08 761 515 560614 560613 C 247 0.00 1195 reject_low 300 ALIGNMENT 75 Y12-15d20.p1k chr07 103 9 1089001 1089096 C 95 93.68 1195 reject_low 190 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 2055 2054 F 247 0.00 1195 reject_low 103 ALIGNMENT 0 Y12-15d20.p1k chr02 511 761 2286 2285 F 251 0.00 1195 reject_low 211 ALIGNMENT 118 Y12-15d20.p1k chr12 141 514 7325 7698 F 374 78.07 1195 reject_low 309 ALIGNMENT 134 Y12-15d20.p1k chr02 10 458 1965 2414 F 449 77.51 1195 reject_low 239 ALIGNMENT 96 Y12-15d20.p1k chr12 189 514 7337 7662 F 326 77.30 1195|9,0 reject_low 308 ALIGNMENT 0 Y12-15d20.p1k chr05 515 761 1806 1805 F 247 0.00 1195 reject_low 265 ALIGNMENT 0 Y12-15d20.p1k chr04 761 515 1530225 1530224 C 247 0.00 1195 reject_low 71 ALIGNMENT 48 Y12-15d20.q1k chr09 107 60 5834 5881 C 48 100.00 1294 accept_tel 0 reject_low 88,90,94,100,104,110,117,120,126,129,132,135,139,145,149,317 ALIGNMENT 117 Y12-15d20.p1k chr14 10 206 1801 1998 F 197 87.31 1195 reject_low 188 ALIGNMENT 0 Y12-15d20.p1k chr13 444 761 2100 2099 F 318 0.00 1195 reject_low 324 ALIGNMENT 145 Y12-15d20.p1k chr09 70 514 1758 2202 F 445 78.43 1195 reject_low 100 ALIGNMENT 0 Y12-15d20.p1k chr13 279 761 2091 2090 F 483 0.00 1195 reject_low 223 ALIGNMENT 159 Y12-15d20.p1k chr02 45 514 1497 1966 F 470 78.72 1195 reject_low 226 ALIGNMENT 0 Y12-15d20.q1k chr08 116 108 4201 4226 C 9 0.00 1294 reject_low 17 ALIGNMENT 0 Y12-15d20.p1k chr12 62 332 1694 1693 F 271 0.00 1195 reject_low 144 ALIGNMENT 886 Y12-15d20.q1k chr09 1249 117 4703 5807 C 1133 94.70 1294 accept_tel 0 ALIGNMENT 176 Y12-15d20.p1k chr06 39 408 898 1267 F 370 83.51 1195 reject_low 221 ALIGNMENT 0 Y12-15d20.p1k chr02 243 761 2414 2413 F 519 0.00 1195 reject_low 243 ALIGNMENT 48 Y12-15d20.q1k chr12 107 60 4495 4542 C 48 100.00 1294 reject_low 13,19,92,101,103,105,115,130,134,137,138,144,151 ALIGNMENT 616 Y12-15d20.p1k chr12 9 1119 1693 2811 F 1111 85.96 1195 reject_low 13 ALIGNMENT 0 Y12-15d20.p1k chr02 496 761 1767 1766 F 266 0.00 1195 reject_low 283 ALIGNMENT 0 Y12-15d20.p1k chr12 197 198 1070007 1076273 C 0 0.00 1195 reject_low 174 ALIGNMENT 155 Y12-15d20.p1k chr06 10 372 904 1267 F 363 81.82 1195 reject_low 228 ALIGNMENT 42 Y12-15d20.p1k chr06 71 190 1146 1265 F 120 79.17 1195 reject_low 302 ALIGNMENT 85 Y12-15d20.p1k chr16 170 10 945962 946123 C 161 85.09 1195 reject_low 140 ALIGNMENT 83 Y12-15d20.p1k chr08 510 250 560581 560841 C 261 78.16 1195 reject_low 277 ALIGNMENT 141 Y12-15d20.p1k chr04 242 9 1530064 1530298 C 234 87.61 1195 reject_low 38 ALIGNMENT 0 Y12-15d20.p1k chr09 227 761 2382 2381 F 535 0.00 1195 reject_low 135 ALIGNMENT 0 Y12-15d20.p1k chr16 188 62 946484 946483 C 127 0.00 1195 reject_low 143 ALIGNMENT 75 Y12-15d20.p1k chr12 9 103 2089 2184 F 95 93.68 1195 reject_low 18,309 ALIGNMENT 0 Y12-15d20.p1k chr12 761 511 1076394 1076393 C 251 0.00 1195 reject_low 56 ALIGNMENT 75 Y12-15d20.p1k chr05 103 9 574924 575019 C 95 93.68 1195 reject_low 319 ALIGNMENT 0 Y12-15d20.p1k chr15 249 62 1089654 1089653 C 188 0.00 1195 reject_low 72 ALIGNMENT 158 Y12-15d20.p1k chr15 278 16 1089229 1089491 C 263 87.45 1195 reject_low 35 ALIGNMENT 77 Y12-15d20.p1k chr05 250 510 1470 1730 F 261 77.39 1195 reject_low 282 ALIGNMENT 0 Y12-15d20.p1k chr12 511 761 2087 2086 F 251 0.00 1195 reject_low 101 ALIGNMENT 136 Y12-15d20.p1k chr02 141 514 1485 1858 F 374 79.68 1195 reject_low 241 ALIGNMENT 203 Y12-15d20.p1k chr08 384 10 560419 560794 C 375 85.60 1195 reject_low 87 ALIGNMENT 96 Y12-15d20.p1k chr07 514 189 1089058 1089383 C 326 77.30 1195 reject_low 51 ALIGNMENT 0 Y12-15d20.p1k chr08 140 62 560843 560842 C 79 0.00 1195 reject_low 258 ALIGNMENT 42 Y12-15d20.p1k chr05 514 297 575089 575306 C 218 73.85 1195 reject_low 168 ALIGNMENT 0 Y12-15d20.q1k chr08 108 116 558136 558161 F 9 0.00 1294 reject_low 14 ALIGNMENT 846 Y12-15d20.q1k chr14 1103 117 4441 5418 C 987 96.15 1294 reject_low 8 ALIGNMENT 158 Y12-15d20.p1k chr12 278 16 1076265 1076527 C 263 87.45 1195 reject_low 175 ALIGNMENT 48 Y12-15d20.q1k chr12 107 60 10030 10077 C 48 100.00 1294 reject_low 18,20,93,96,102,106,108,113,123,141,307,308,309,310,311,312,313,314,315 ALIGNMENT 224 Y12-15d20.p1k chr15 384 10 1089231 1089606 C 375 87.47 1195 reject_low 25 ALIGNMENT 0 Y12-15d20.p1k chr10 62 226 1718 1717 F 165 0.00 1195 reject_low 131 ALIGNMENT 237 Y12-15d20.p1k chr02 9 510 1784 2286 F 502 83.27 1195 reject_low 211 ALIGNMENT 0 Y12-15d20.q1k chr16 1198 1104 4272 4349 C 95 0.00 1294 reject_low 9 ALIGNMENT 42 Y12-15d20.p1k chr12 297 514 7337 7554 F 218 73.85 1195|9,0 reject_low 310,311,315 ALIGNMENT 82 Y12-15d20.p1k chr14 250 514 1574 1838 F 265 77.74 1195 reject_low 205 ALIGNMENT 0 Y12-15d20.p1k chr16 761 385 945965 945964 C 377 0.00 1195 reject_low 21 ALIGNMENT 0 Y12-15d20.p1k chr06 373 761 1267 1266 F 389 0.00 1195 reject_low 228 ALIGNMENT 0 Y12-15d20.p1k chr16 351 761 1907 1906 F 411 0.00 1195 reject_low 187 ALIGNMENT 0 Y12-15d20.p1k chr10 511 761 2109 2108 F 251 0.00 1195 reject_low 98 ALIGNMENT 0 Y12-15d20.p1k chr06 259 761 1261 1260 F 503 0.00 1195 reject_low 256 ALIGNMENT 0 Y12-15d20.p1k chr10 409 761 2367 2366 F 353 0.00 1195 reject_low 95 ALIGNMENT 48 Y12-15d20.q1k chr13 107 60 4371 4418 C 48 100.00 1294 reject_low 12,86 ALIGNMENT 224 Y12-15d20.p1k chr04 384 10 1530066 1530441 C 375 87.47 1195 reject_low 24 ALIGNMENT 0 Y12-15d20.p1k chr08 188 62 560831 560830 C 127 0.00 1195 reject_low 270 ALIGNMENT 96 Y12-15d20.p1k chr05 514 189 574981 575306 C 326 77.30 1195 reject_low 164 ALIGNMENT 0 Y12-15d20.q1k chr07 108 1198 1085524 1086605 F 1091 0.00 1294 reject_low 22,26,28,30,32,36,40,41,50,51,55,59,69,73,75,190 ALIGNMENT 0 Y12-15d20.p1k chr16 515 761 1747 1746 F 247 0.00 1195 reject_low 206 ALIGNMENT 0 Y12-15d20.p1k chr06 517 761 1123 1122 F 245 0.00 1195 reject_low 273 ALIGNMENT 0 Y12-15d20.q1k chr12 108 1198 1066267 1067237 F 1091 0.00 1294 reject_low 23,27,29,31,33,37,42,43,44,49,52,56,60,70,74,76,77,170,171,174,175,176,177,178,181,193,204 ALIGNMENT 151 Y12-15d20.p1k chr02 9 314 2108 2414 F 306 83.99 1195 reject_low 227 ALIGNMENT 0 Y12-15d20.q1k chr02 862 575 4213 4212 C 288 0.00 1294 reject_low 15 ALIGNMENT 0 Y12-15d20.p1k chr09 100 761 2303 2302 F 662 0.00 1195 reject_low 149 ALIGNMENT 436 Y12-15d20.q1k chr06 572 117 3050 3506 C 456 98.90 1294 reject_low 11 ALIGNMENT 103 Y12-15d20.p1k chr08 9 175 1769 1936 F 167 88.02 1195 reject_low 252 ALIGNMENT 195 Y12-15d20.p1k chr02 9 516 1496 2004 F 508 80.31 1195 reject_low 219 ALIGNMENT 0 Y12-15d20.p1k chr02 104 384 2384 2364 F 281 0.00 1195 reject_low 322 ALIGNMENT 48 Y12-15d20.q1k chr02 107 60 4696 4743 C 48 100.00 1294 reject_low 15,84,85 ALIGNMENT 255 Y12-15d20.p1k chr02 9 384 2036 2412 F 376 90.16 1195 reject_low 84 ALIGNMENT 49 Y12-15d20.p1k chr10 299 514 1718 1933 F 216 75.00 1195 reject_low 142 ALIGNMENT 161 Y12-15d20.p1k chr16 278 16 945962 946224 C 263 87.83 1195 reject_low 107 ALIGNMENT 85 Y12-15d20.p1k chr06 285 516 892 1123 F 232 79.74 1195 reject_low 273 ALIGNMENT 0 Y12-15d20.p1k chr10 62 154 1718 1717 F 93 0.00 1195 reject_low 127 ALIGNMENT 0 Y12-15d20.p1k chr04 296 62 1530478 1530477 C 235 0.00 1195 reject_low 80 ALIGNMENT 114 Y12-15d20.p1k chr04 206 10 1530064 1530261 C 197 86.80 1195 reject_low 53 ALIGNMENT 0 Y12-15d20.p1k chr12 315 761 7750 7749 F 447 0.00 1195 reject_low 102 ALIGNMENT 30 Y12-15d20.p1k chr04 510 333 1530300 1530477 C 178 73.03 1195 reject_low 82 ALIGNMENT 82 Y12-15d20.p1k chr05 514 250 575053 575317 C 265 77.74 1195 reject_low 166 ALIGNMENT 864 Y12-15d20.q1k chr04 117 1103 1526644 1527621 F 987 96.76 1294 reject_low 3 ALIGNMENT 0 Y12-15d20.p1k chr14 62 332 1585 1584 F 271 0.00 1195 reject_low 213 ALIGNMENT 99 Y12-15d20.p1k chr15 514 189 1089317 1089642 C 326 77.61 1195 reject_low 64 ALIGNMENT 0 Y12-15d20.p1k chr05 373 761 2060 2059 F 389 0.00 1195 reject_low 224 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 1822 1821 F 247 0.00 1195 reject_low 281 ALIGNMENT 0 Y12-15d20.p1k chr14 207 761 1998 1997 F 555 0.00 1195 reject_low 188 ALIGNMENT 85 Y12-15d20.p1k chr16 10 170 1746 1907 F 161 85.09 1195 reject_low 197 ALIGNMENT 93 Y12-15d20.p1k chr08 206 10 560417 560614 C 197 83.25 1195 reject_low 264 ALIGNMENT 41 Y12-15d20.p1k chr05 44 118 1984 2058 F 75 85.33 1195 reject_low 297 ALIGNMENT 144 Y12-15d20.p1k chr12 9 242 7516 7750 F 234 88.03 1195 reject_low 96 ALIGNMENT 0 Y12-15d20.p1k chr04 761 279 1530065 1530064 C 483 0.00 1195 reject_low 34 ALIGNMENT 0 Y12-15d20.p1k chr08 761 99 560418 560417 C 663 0.00 1195 reject_low 293 ALIGNMENT 0 Y12-15d20.p1k chr12 332 62 1076679 1076678 C 271 0.00 1195 reject_low 76 ALIGNMENT 30 Y12-15d20.p1k chr05 510 333 575129 575306 C 178 73.03 1195 reject_low 169 ALIGNMENT 579 Y12-15d20.p1k chr07 1119 117 1088374 1089383 C 1003 86.74 1195 reject_low 5 ALIGNMENT 0 Y12-15d20.p1k chr08 761 515 560506 560505 C 247 0.00 1195 reject_low 270 ALIGNMENT 0 Y12-15d20.p1k chr04 761 511 1530193 1530192 C 251 0.00 1195 reject_low 67 ALIGNMENT 68 Y12-15d20.p1k chr02 250 510 1486 1746 F 261 76.25 1195 reject_low 288 ALIGNMENT 0 Y12-15d20.p1k chr12 243 761 7750 7749 F 519 0.00 1195 reject_low 96 ALIGNMENT 0 Y12-15d20.p1k chr12 296 279 1070016 1076264 C 18 0.00 1195 reject_low 175 ALIGNMENT 41 Y12-15d20.p1k chr09 44 118 2308 2382 F 75 85.33 1195|0,1 reject_low 317 ALIGNMENT 84 Y12-15d20.p1k chr16 514 189 946158 946483 C 326 76.07 1195 reject_low 143 ALIGNMENT 0 Y12-15d20.p1k chr07 332 62 1089384 1089383 C 271 0.00 1195 reject_low 75 ALIGNMENT 177 Y12-15d20.p1k chr16 514 45 946014 946483 C 470 80.00 1195 reject_low 99 ALIGNMENT 41 Y12-15d20.p1k chr06 44 118 1191 1265 F 75 85.33 1195 reject_low 298 ALIGNMENT 0 Y12-15d20.p1k chr05 62 140 1469 1468 F 79 0.00 1195 reject_low 255 ALIGNMENT 0 Y12-15d20.p1k chr15 761 515 1089426 1089425 C 247 0.00 1195 reject_low 81 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 1875 1874 F 247 0.00 1195 reject_low 144 ALIGNMENT 30 Y12-15d20.p1k chr13 333 510 1678 1855 F 178 73.03 1195 reject_low 306 ALIGNMENT 117 Y12-15d20.p1k chr12 10 206 7553 7750 F 197 87.31 1195 reject_low 108 ALIGNMENT 118 Y12-15d20.p1k chr04 458 45 1530064 1530477 C 414 77.05 1195 reject_low 57 ALIGNMENT 0 Y12-15d20.p1k chr08 761 511 560546 560545 C 251 0.00 1195 reject_low 280 ALIGNMENT 40 Y12-15d20.p1k chr10 116 190 2291 2365 F 75 85.33 1195|2,0 reject_low 318 ALIGNMENT 150 Y12-15d20.p1k chr10 47 514 1718 2185 F 468 78.21 1195 reject_low 97 ALIGNMENT 20 Y12-15d20.q1k chr05 1199 1249 572529 572576 F 51 84.31 1294 reject_low 1,152,156,157,158,159,160,161,162,163,164,165,166,167,168,169,319 ALIGNMENT 25 Y12-15d20.p1k chr04 443 385 1530055 1530113 C 59 81.36 1195 reject_low 202 ALIGNMENT 30 Y12-15d20.p1k chr12 510 333 1069838 1070015 C 178 73.03 1195|0,9 reject_low 181,204 ALIGNMENT 99 Y12-15d20.p1k chr04 514 189 1530152 1530477 C 326 77.61 1195 reject_low 63 ALIGNMENT 0 Y12-15d20.p1k chr09 515 761 2202 2201 F 247 0.00 1195 reject_low 100 ALIGNMENT 144 Y12-15d20.p1k chr12 314 47 1076265 1076532 C 268 85.45 1195|9,0 reject_low 177 ALIGNMENT 200 Y12-15d20.p1k chr02 10 510 1533 2034 F 501 80.84 1195 reject_low 218 ALIGNMENT 0 Y12-15d20.q1k chr10 116 108 5791 5816 C 9 0.00 1294 reject_low 2 ALIGNMENT 0 Y12-15d20.p1k chr06 511 761 1009 1008 F 251 0.00 1195 reject_low 296 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 1966 1965 F 247 0.00 1195 reject_low 226 ALIGNMENT 0 Y12-15d20.p1k chr12 62 249 1683 1682 F 188 0.00 1195 reject_low 137 ALIGNMENT 0 Y12-15d20.q1k chr14 1198 108 4363 5444 C 1091 0.00 1294 reject_low 172,179,182,184,186,188,191,194,196,198,200,205,207,209,213,320 ALIGNMENT 0 Y12-15d20.p1k chr02 351 761 2414 2413 F 411 0.00 1195 reject_low 225 ALIGNMENT 0 Y12-15d20.p1k chr12 761 459 1076266 1076265 C 303 0.00 1195 reject_low 43 ALIGNMENT 82 Y12-15d20.p1k chr07 514 250 1089130 1089394 C 265 77.74 1195 reject_low 59 ALIGNMENT 0 Y12-15d20.p1k chr05 409 761 2060 2059 F 353 0.00 1195 reject_low 242 ALIGNMENT 0 Y12-15d20.p1k chr04 761 315 1530065 1530064 C 447 0.00 1195 reject_low 45 ALIGNMENT 0 Y12-15d20.p1k chr15 761 515 1089282 1089281 C 247 0.00 1195 reject_low 62 ALIGNMENT 0 Y12-15d20.p1k chr16 99 761 1907 1906 F 663 0.00 1195 reject_low 208 ALIGNMENT 161 Y12-15d20.p1k chr07 278 16 1088970 1089232 C 263 87.83 1195 reject_low 26 ALIGNMENT 579 Y12-15d20.p1k chr14 117 1119 1585 2594 F 1003 86.74 1195 reject_low 8 ALIGNMENT 0 Y12-15d20.p1k chr06 119 761 1265 1264 F 643 0.00 1195 reject_low 298 ALIGNMENT 0 Y12-15d20.p1k chr05 249 62 575318 575317 C 188 0.00 1195 reject_low 166 ALIGNMENT 429 Y12-15d20.q1k chr08 117 574 558162 558619 F 458 98.25 1294 reject_low 14 ALIGNMENT 150 Y12-15d20.p1k chr16 510 117 946090 946483 C 394 80.20 1195 reject_low 116 ALIGNMENT 0 Y12-15d20.p1k chr12 188 62 1076679 1076678 C 127 0.00 1195 reject_low 49 ALIGNMENT 0 Y12-15d20.p1k chr07 761 459 1088971 1088970 C 303 0.00 1195 reject_low 40 ALIGNMENT 0 Y12-15d20.p1k chr08 761 243 560418 560417 C 519 0.00 1195 reject_low 244 ALIGNMENT 0 Y12-15d20.p1k chr07 761 207 1088971 1088970 C 555 0.00 1195 reject_low 36 ALIGNMENT 0 Y12-15d20.p1k chr07 761 385 1088973 1088972 C 377 0.00 1195 reject_low 22 ALIGNMENT 130 Y12-15d20.p1k chr05 10 408 1661 2060 F 399 78.45 1195 reject_low 242 ALIGNMENT 82 Y12-15d20.p1k chr12 170 10 1069602 1069763 C 161 84.47 1195 reject_low 52 ALIGNMENT 0 Y12-15d20.p1k chr12 761 243 1069603 1069602 C 519 0.00 1195 reject_low 29 ALIGNMENT 0 Y12-15d20.p1k chr05 188 62 575307 575306 C 127 0.00 1195 reject_low 164 ALIGNMENT 0 Y12-15d20.p1k chr16 761 351 945963 945962 C 411 0.00 1195 reject_low 114 ALIGNMENT 20 Y12-15d20.q1k chr07 1199 1249 1086606 1086653 F 51 84.31 1294 reject_low 5,22,26,28,30,32,36,40,41,50,51,55,59,69,73,75,190 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1069655 1069654 C 247 0.00 1195 reject_low 176 ALIGNMENT 42 Y12-15d20.p1k chr13 297 514 1678 1895 F 218 73.85 1195 reject_low 301 ALIGNMENT 161 Y12-15d20.p1k chr05 278 16 574893 575155 C 263 87.83 1195 reject_low 156 ALIGNMENT 25 Y12-15d20.p1k chr12 443 385 1069593 1069651 C 59 81.36 1195 reject_low 170,193 ALIGNMENT 0 Y12-15d20.p1k chr07 296 62 1089384 1089383 C 235 0.00 1195 reject_low 73 ALIGNMENT 0 Y12-15d20.p1k chr09 511 761 2090 2089 F 251 0.00 1195 reject_low 129 ALIGNMENT 0 Y12-15d20.p1k chr12 104 140 2185 7324 F 37 0.00 1195 reject_low 309 ALIGNMENT 30 Y12-15d20.p1k chr12 333 510 7337 7514 F 178 73.03 1195|9,0 reject_low 313 ALIGNMENT 75 Y12-15d20.p1k chr13 9 103 1965 2060 F 95 93.68 1195 reject_low 324 ALIGNMENT 90 Y12-15d20.p1k chr05 510 225 575021 575306 C 286 77.97 1195 reject_low 165 ALIGNMENT 0 Y12-15d20.p1k chr13 62 332 1678 1677 F 271 0.00 1195 reject_low 306 ALIGNMENT 0 Y12-15d20.p1k chr16 761 171 945963 945962 C 591 0.00 1195 reject_low 140 ALIGNMENT 0 Y12-15d20.p1k chr09 62 332 1769 1768 F 271 0.00 1195 reject_low 145 ALIGNMENT 47 Y12-15d20.q1k chr12 61 107 1072772 1072818 F 47 100.00 1294 reject_low 155 ALIGNMENT 0 Y12-15d20.p1k chr04 116 62 1530478 1530477 C 55 0.00 1195 reject_low 3 ALIGNMENT 144 Y12-15d20.p1k chr16 242 9 945962 946196 C 234 88.03 1195 reject_low 109 ALIGNMENT 0 Y12-15d20.p1k chr04 761 385 1530067 1530066 C 377 0.00 1195 reject_low 24 ALIGNMENT 0 Y12-15d20.p1k chr16 761 515 946159 946158 C 247 0.00 1195 reject_low 143 ALIGNMENT 0 Y12-15d20.p1k chr07 116 62 1089384 1089383 C 55 0.00 1195 reject_low 5 ALIGNMENT 144 Y12-15d20.p1k chr04 314 47 1530064 1530331 C 268 85.45 1195 reject_low 45 ALIGNMENT 582 Y12-15d20.p1k chr13 117 1119 1678 2687 F 1003 86.84 1195 reject_low 12 ALIGNMENT 115 Y12-15d20.p1k chr04 514 141 1530116 1530489 C 374 77.81 1195 reject_low 61 ALIGNMENT 42 Y12-15d20.p1k chr15 98 10 1089229 1089318 C 89 83.15 1195 reject_low 79 ALIGNMENT 0 Y12-15d20.q1k chr10 862 108 5818 5817 C 755 0.00 1294 reject_low 89,91,95,97,98,111,118,121,125,127,131,133,136,142,150,318 ALIGNMENT 0 Y12-15d20.p1k chr15 116 62 1089643 1089642 C 55 0.00 1195 reject_low 4 ALIGNMENT 0 Y12-15d20.p1k chr16 459 761 1907 1906 F 303 0.00 1195 reject_low 192 ALIGNMENT 0 Y12-15d20.p1k chr14 511 761 1870 1869 F 251 0.00 1195 reject_low 200 ALIGNMENT 864 Y12-15d20.q1k chr15 117 1103 1085809 1086786 F 987 96.76 1294 reject_low 4 ALIGNMENT 0 Y12-15d20.p1k chr05 224 62 575307 575306 C 163 0.00 1195 reject_low 165 ALIGNMENT 0 Y12-15d20.q1k chr12 862 575 4012 4011 C 288 0.00 1294 reject_low 13,19 ALIGNMENT 0 Y12-15d20.p1k chr10 511 761 1965 1964 F 251 0.00 1195 reject_low 133 ALIGNMENT 25 Y12-15d20.p1k chr16 385 443 1858 1916 F 59 81.36 1195 reject_low 321 ALIGNMENT 0 Y12-15d20.p1k chr09 62 188 1769 1768 F 127 0.00 1195 reject_low 129 ALIGNMENT 0 Y12-15d20.p1k chr05 116 62 575307 575306 C 55 0.00 1195 reject_low 1 ALIGNMENT 117 Y12-15d20.p1k chr05 206 10 574893 575090 C 197 87.31 1195 reject_low 160 ALIGNMENT 48 Y12-15d20.q1k chr07 60 107 1085476 1085523 F 48 100.00 1294 reject_low 5,22,26,28,30,32,36,40,41,50,51,55,59,69,73,75,190 ALIGNMENT 0 Y12-15d20.p1k chr05 517 761 1988 1987 F 245 0.00 1195 reject_low 220 ALIGNMENT 0 Y12-15d20.p1k chr13 99 761 2091 2090 F 663 0.00 1195 reject_low 294 ALIGNMENT 0 Y12-15d20.p1k chr08 62 140 1650 1649 F 79 0.00 1195 reject_low 233 ALIGNMENT 41 Y12-15d20.p1k chr10 44 118 2291 2365 F 75 85.33 1195|0,1 reject_low 318 ALIGNMENT 75 Y12-15d20.p1k chr12 9 103 7624 7719 F 95 93.68 1195 reject_low 314 ALIGNMENT 0 Y12-15d20.p1k chr16 332 62 946484 946483 C 271 0.00 1195 reject_low 154 ALIGNMENT 85 Y12-15d20.p1k chr05 170 10 574893 575054 C 161 85.09 1195 reject_low 163 ALIGNMENT 0 Y12-15d20.p1k chr07 249 62 1089395 1089394 C 188 0.00 1195 reject_low 59 ALIGNMENT 0 Y12-15d20.p1k chr07 761 511 1089099 1089098 C 251 0.00 1195 reject_low 55 ALIGNMENT 0 Y12-15d20.p1k chr15 761 207 1089230 1089229 C 555 0.00 1195 reject_low 54 ALIGNMENT 51 Y12-15d20.p1k chr06 321 514 892 1085 F 194 76.29 1195 reject_low 291 ALIGNMENT 158 Y12-15d20.p1k chr04 278 16 1530064 1530326 C 263 87.45 1195 reject_low 34 ALIGNMENT 82 Y12-15d20.p1k chr12 514 250 1076425 1076689 C 265 77.74 1195 reject_low 60 ALIGNMENT 0 Y12-15d20.p1k chr08 357 761 1937 1936 F 405 0.00 1195 reject_low 249 ALIGNMENT 0 Y12-15d20.p1k chr04 761 207 1530065 1530064 C 555 0.00 1195 reject_low 53 ALIGNMENT 0 Y12-15d20.p1k chr12 496 761 1928 1927 F 266 0.00 1195 reject_low 137 ALIGNMENT 59 Y12-15d20.p1k chr02 297 495 1497 1695 F 199 77.39 1195 reject_low 289 ALIGNMENT 0 Y12-15d20.q1k chr05 1104 1198 572451 572528 F 95 0.00 1294 reject_low 1 ALIGNMENT 0 Y12-15d20.p1k chr08 761 385 560420 560419 C 377 0.00 1195 reject_low 87 ALIGNMENT 46 Y12-15d20.p1k chr16 514 333 946302 946483 C 182 75.82 1195 reject_low 154 ALIGNMENT 62 Y12-15d20.p1k chr08 333 518 1662 1847 F 186 78.49 1195 reject_low 284 ALIGNMENT 227 Y12-15d20.p1k chr13 10 384 1714 2089 F 375 87.73 1195 reject_low 86 ALIGNMENT 40 Y12-15d20.p1k chr09 116 190 2308 2382 F 75 85.33 1195|2,0 reject_low 317 ALIGNMENT 437 Y12-15d20.q1k chr16 117 574 943708 944166 F 458 98.91 1294 reject_low 16,21 ALIGNMENT 0 Y12-15d20.p1k chr16 511 761 1671 1670 F 251 0.00 1195 reject_low 214 ALIGNMENT 0 Y12-15d20.p1k chr14 62 188 1585 1584 F 127 0.00 1195 reject_low 198 ALIGNMENT 0 Y12-15d20.p1k chr08 761 511 560582 560581 C 251 0.00 1195 reject_low 277 ALIGNMENT 0 Y12-15d20.p1k chr07 384 104 1089020 1089000 C 281 0.00 1195 reject_low 190 ALIGNMENT 0 Y12-15d20.p1k chr08 116 62 560831 560830 C 55 0.00 1195 reject_low 14 ALIGNMENT 0 Y12-15d20.q1k chr06 116 108 3507 3532 C 9 0.00 1294 reject_low 11 ALIGNMENT 0 Y12-15d20.p1k chr16 140 62 946496 946495 C 79 0.00 1195 reject_low 119 ALIGNMENT 146 Y12-15d20.p1k chr06 10 334 940 1265 F 325 82.46 1195 reject_low 232 ALIGNMENT 0 Y12-15d20.q1k chr05 62 1198 572529 572528 F 1137 0.00 1294 reject_low 152,156,157,158,159,160,161,162,163,164,165,166,167,168,169,319 ALIGNMENT 0 Y12-15d20.p1k chr08 332 62 560831 560830 C 271 0.00 1195 reject_low 305 ALIGNMENT 0 Y12-15d20.p1k chr12 761 207 1069603 1069602 C 555 0.00 1195 reject_low 37 ALIGNMENT 0 Y12-15d20.p1k chr08 761 351 560418 560417 C 411 0.00 1195 reject_low 254 ALIGNMENT 0 Y12-15d20.p1k chr16 279 761 1907 1906 F 483 0.00 1195 reject_low 180 ALIGNMENT 120 Y12-15d20.p1k chr05 141 510 1469 1838 F 370 78.38 1195 reject_low 255 ALIGNMENT 0 Y12-15d20.p1k chr16 761 243 945963 945962 C 519 0.00 1195 reject_low 109 ALIGNMENT 0 Y12-15d20.q1k chr12 108 116 1066267 1072844 F 9 0.00 1294 reject_low 6 ALIGNMENT 117 Y12-15d20.p1k chr16 206 10 945962 946159 C 197 87.31 1195 reject_low 124 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1076354 1076353 C 247 0.00 1195 reject_low 49 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 7698 7697 F 247 0.00 1195 reject_low 309 ALIGNMENT 696 Y12-15d20.p1k chr05 16 1119 1560 2658 F 1104 88.41 1195 reject_low 7 ALIGNMENT 34 Y12-15d20.p1k chr05 333 514 1481 1662 F 182 73.63 1195 reject_low 304 ALIGNMENT 117 Y12-15d20.p1k chr12 10 206 2018 2215 F 197 87.31 1195|0,9 reject_low 308 ALIGNMENT 682 Y12-15d20.q1k chr12 117 953 1066293 1067097 F 837 95.58 1294 reject_low 10 ALIGNMENT 48 Y12-15d20.q1k chr10 107 60 5817 5864 C 48 100.00 1294 reject_low 2,89,91,95,97,98,111,118,121,125,127,131,133,136,142,150,318 ALIGNMENT 0 Y12-15d20.p1k chr06 62 284 892 891 F 223 0.00 1195 reject_low 273 ALIGNMENT 85 Y12-15d20.p1k chr14 10 170 1837 1998 F 161 85.09 1195 reject_low 196 ALIGNMENT 0 Y12-15d20.p1k chr16 62 116 1494 1493 F 55 0.00 1195 reject_low 9 ALIGNMENT 0 Y12-15d20.p1k chr13 207 761 2091 2090 F 555 0.00 1195 reject_low 245 ALIGNMENT 108 Y12-15d20.p1k chr06 9 258 1011 1261 F 250 82.00 1195 reject_low 256 ALIGNMENT 48 Y12-15d20.q1k chr08 107 60 4227 4274 C 48 100.00 1294 reject_low 17 ALIGNMENT 39 Y12-15d20.p1k chr02 333 504 1497 1668 F 172 75.00 1195 reject_low 303 ALIGNMENT 42 Y12-15d20.p1k chr13 10 98 2002 2091 F 89 83.15 1195 reject_low 294 ALIGNMENT 159 Y12-15d20.p1k chr08 141 443 1650 1952 F 303 85.15 1195 reject_low 233 ALIGNMENT 249 Y12-15d20.p1k chr02 9 510 1748 2250 F 502 84.06 1195 reject_low 85 ALIGNMENT 0 Y12-15d20.p1k chr16 444 761 1916 1915 F 318 0.00 1195 reject_low 321 ALIGNMENT 0 Y12-15d20.p1k chr12 459 761 7750 7749 F 303 0.00 1195 reject_low 113 ALIGNMENT 0 Y12-15d20.p1k chr09 515 761 1950 1949 F 247 0.00 1195 reject_low 145 ALIGNMENT 0 Y12-15d20.q1k chr04 1104 1198 1527622 1527699 F 95 0.00 1294 reject_low 3 ALIGNMENT 0 Y12-15d20.p1k chr12 444 761 7759 7758 F 318 0.00 1195 reject_low 314 ALIGNMENT 0 Y12-15d20.p1k chr12 761 511 1069839 1069838 C 251 0.00 1195 reject_low 181,204 ALIGNMENT 0 Y12-15d20.p1k chr12 761 279 1069603 1069602 C 483 0.00 1195 reject_low 27 ALIGNMENT 158 Y12-15d20.p1k chr09 9 408 1984 2384 F 400 80.75 1195 reject_low 94 ALIGNMENT 0 Y12-15d20.p1k chr02 171 761 2414 2413 F 591 0.00 1195 reject_low 268 ALIGNMENT 0 Y12-15d20.p1k chr05 761 515 575090 575089 C 247 0.00 1195 reject_low 168 ALIGNMENT 0 Y12-15d20.p1k chr14 459 761 1998 1997 F 303 0.00 1195 reject_low 191 ALIGNMENT 42 Y12-15d20.p1k chr12 98 10 1076265 1076354 C 89 83.15 1195 reject_low 204 ALIGNMENT 85 Y12-15d20.p1k chr12 10 170 7589 7750 F 161 85.09 1195 reject_low 123 ALIGNMENT 0 Y12-15d20.p1k chr16 761 444 945954 945953 C 318 0.00 1195 reject_low 316 ALIGNMENT 0 Y12-15d20.p1k chr12 511 761 7514 7513 F 251 0.00 1195 reject_low 313 ALIGNMENT 217 Y12-15d20.p1k chr02 9 514 1640 2146 F 506 81.82 1195 reject_low 215 ALIGNMENT 0 Y12-15d20.p1k chr07 761 515 1089131 1089130 C 247 0.00 1195 reject_low 59 ALIGNMENT 0 Y12-15d20.p1k chr15 761 515 1089390 1089389 C 247 0.00 1195 reject_low 72 ALIGNMENT 94 Y12-15d20.p1k chr08 458 45 560417 560830 C 414 75.12 1195 reject_low 272 ALIGNMENT 20 Y12-15d20.q1k chr15 1199 1249 1086865 1086912 F 51 84.31 1294 reject_low 4,25,35,39,46,48,54,58,62,64,66,68,72,79,81,83,203 ALIGNMENT 487 Y12-15d20.p1k chr08 225 1119 1662 2543 F 895 86.48 1195 reject_low 17 ALIGNMENT 0 Y12-15d20.p1k chr05 511 761 1730 1729 F 251 0.00 1195 reject_low 282 ALIGNMENT 0 Y12-15d20.p1k chr08 176 761 1936 1935 F 586 0.00 1195 reject_low 252 ALIGNMENT 0 Y12-15d20.p1k chr05 511 761 1838 1837 F 251 0.00 1195 reject_low 255 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1076318 1076317 C 247 0.00 1195 reject_low 44 ALIGNMENT 161 Y12-15d20.p1k chr14 16 278 1736 1998 F 263 87.83 1195 reject_low 179 ALIGNMENT 0 Y12-15d20.p1k chr12 62 296 1694 1693 F 235 0.00 1195 reject_low 134 ALIGNMENT 75 Y12-15d20.p1k chr16 9 103 1781 1876 F 95 93.68 1195 reject_low 321 ALIGNMENT 210 Y12-15d20.p1k chr02 10 514 1821 2326 F 505 81.39 1195 reject_low 216 ALIGNMENT 0 Y12-15d20.p1k chr14 444 761 2007 2006 F 318 0.00 1195 reject_low 320 ALIGNMENT 47 Y12-15d20.q1k chr16 61 107 943635 943681 F 47 100.00 1294 reject_low 16,21,99,107,109,112,114,116,119,122,124,128,140,143,146,147,148,153,154,316 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 7662 7661 F 247 0.00 1195 reject_low 308 ALIGNMENT 0 Y12-15d20.p1k chr05 62 249 1470 1469 F 188 0.00 1195 reject_low 282 ALIGNMENT 0 Y12-15d20.p1k chr14 62 140 1573 1572 F 79 0.00 1195 reject_low 194 ALIGNMENT 0 Y12-15d20.p1k chr07 761 444 1088962 1088961 C 318 0.00 1195 reject_low 190 ALIGNMENT 20 Y12-15d20.q1k chr16 1249 1199 4224 4271 C 51 84.31 1294 reject_low 9,173,180,183,185,187,189,192,195,197,199,201,206,208,210,214,321 ALIGNMENT 0 Y12-15d20.p1k chr08 761 171 560418 560417 C 591 0.00 1195 reject_low 269 ALIGNMENT 110 Y12-15d20.p1k chr10 10 372 2004 2367 F 363 77.69 1195 reject_low 121 ALIGNMENT 159 Y12-15d20.p1k chr05 9 372 1696 2060 F 364 82.14 1195 reject_low 224 ALIGNMENT 0 Y12-15d20.p1k chr13 351 761 2091 2090 F 411 0.00 1195 reject_low 240 ALIGNMENT 121 Y12-15d20.p1k chr07 458 45 1088970 1089383 C 414 77.29 1195 reject_low 40 ALIGNMENT 120 Y12-15d20.p1k chr10 16 334 2047 2365 F 319 79.94 1195 reject_low 111 ALIGNMENT 0 Y12-15d20.p1k chr08 249 761 1937 1936 F 513 0.00 1195 reject_low 247 ALIGNMENT 0 Y12-15d20.p1k chr16 761 99 945963 945962 C 663 0.00 1195 reject_low 153 ALIGNMENT 77 Y12-15d20.p1k chr16 510 297 946270 946483 C 214 79.44 1195 reject_low 146 ALIGNMENT 0 Y12-15d20.p1k chr07 224 62 1089384 1089383 C 163 0.00 1195 reject_low 55 ALIGNMENT 0 Y12-15d20.p1k chr16 515 761 1819 1818 F 247 0.00 1195 reject_low 199 ALIGNMENT 740 Y12-15d20.q1k chr05 953 60 4586 5447 C 894 95.86 1294 reject_low 7 ALIGNMENT 0 Y12-15d20.p1k chr09 62 141 1758 1757 F 80 0.00 1195 reject_low 104 ALIGNMENT 53 Y12-15d20.p1k chr05 297 510 1481 1694 F 214 75.70 1195 reject_low 290 ALIGNMENT 0 Y12-15d20.q1k chr02 862 108 4697 4696 C 755 0.00 1294 reject_low 84,85 ALIGNMENT 148 Y12-15d20.p1k chr16 514 141 946122 946495 C 374 80.75 1195 reject_low 119 ALIGNMENT 227 Y12-15d20.p1k chr12 10 384 7373 7748 F 375 87.73 1195 reject_low 20 ALIGNMENT 147 Y12-15d20.p1k chr12 47 314 7483 7750 F 268 85.82 1195 reject_low 102 ALIGNMENT 0 Y12-15d20.q1k chr08 575 862 558619 558618 F 288 0.00 1294 reject_low 14 ALIGNMENT 0 Y12-15d20.p1k chr12 444 761 2224 2223 F 318 0.00 1195 reject_low 151 ALIGNMENT 0 Y12-15d20.p1k chr12 140 62 1076691 1076690 C 79 0.00 1195 reject_low 44 ALIGNMENT 202 Y12-15d20.p1k chr09 45 516 1769 2240 F 472 81.78 1195 reject_low 88 ALIGNMENT 0 Y12-15d20.p1k chr14 515 761 1838 1837 F 247 0.00 1195 reject_low 205 ALIGNMENT 42 Y12-15d20.p1k chr07 98 10 1088970 1089059 C 89 83.15 1195 reject_low 69 ALIGNMENT 28 Y12-15d20.p1k chr09 41 99 2245 2303 F 59 83.05 1195 reject_low 149 ALIGNMENT 30 Y12-15d20.p1k chr08 510 333 560653 560830 C 178 73.03 1195 reject_low 305 ALIGNMENT 0 Y12-15d20.q1k chr14 1198 1104 4363 4440 C 95 0.00 1294 reject_low 8 ALIGNMENT 48 Y12-15d20.q1k chr08 60 107 558088 558135 F 48 100.00 1294 reject_low 14,87 ALIGNMENT 112 Y12-15d20.p1k chr08 9 175 1733 1900 F 167 89.82 1195 reject_low 246 ALIGNMENT 117 Y12-15d20.p1k chr07 206 10 1088970 1089167 C 197 87.31 1195 reject_low 36 ALIGNMENT 864 Y12-15d20.q1k chr12 117 1103 1072845 1073822 F 987 96.76 1294 reject_low 6 ALIGNMENT 0 Y12-15d20.p1k chr14 171 761 1998 1997 F 591 0.00 1195 reject_low 196 ALIGNMENT 0 Y12-15d20.p1k chr12 385 761 2213 2212 F 377 0.00 1195 reject_low 19 ALIGNMENT 0 Y12-15d20.p1k chr16 116 62 946484 946483 C 55 0.00 1195 reject_low 116 ALIGNMENT 0 Y12-15d20.p1k chr02 62 224 1497 1496 F 163 0.00 1195 reject_low 283 ALIGNMENT 68 Y12-15d20.p1k chr09 10 226 2165 2382 F 217 77.88 1195 reject_low 135 ALIGNMENT 438 Y12-15d20.q1k chr12 574 117 9546 10003 C 458 98.91 1294 reject_low 18,20 ALIGNMENT 90 Y12-15d20.p1k chr04 510 225 1530192 1530477 C 286 77.97 1195 reject_low 67 ALIGNMENT 143 Y12-15d20.p1k chr05 11 298 1770 2058 F 288 84.03 1195 reject_low 234 ALIGNMENT 141 Y12-15d20.p1k chr12 242 9 1076265 1076499 C 234 87.61 1195|9,0 reject_low 171 ALIGNMENT 0 Y12-15d20.p1k chr05 62 332 1481 1480 F 271 0.00 1195 reject_low 304 ALIGNMENT 0 Y12-15d20.p1k chr16 761 511 946091 946090 C 251 0.00 1195 reject_low 116 ALIGNMENT 0 Y12-15d20.p1k chr12 761 444 1069594 1069593 C 318 0.00 1195 reject_low 170,193 ALIGNMENT 0 Y12-15d20.p1k chr12 761 511 1076502 1076501 C 251 0.00 1195 reject_low 76 ALIGNMENT 0 Y12-15d20.p1k chr08 284 761 1900 1899 F 478 0.00 1195 reject_low 250 ALIGNMENT 0 Y12-15d20.p1k chr09 62 296 1769 1768 F 235 0.00 1195 reject_low 139 ALIGNMENT 75 Y12-15d20.p1k chr02 9 103 2288 2383 F 95 93.68 1195 reject_low 322 ALIGNMENT 0 Y12-15d20.p1k chr15 761 99 1089230 1089229 C 663 0.00 1195 reject_low 79 ALIGNMENT 0 Y12-15d20.p1k chr02 511 761 1746 1745 F 251 0.00 1195 reject_low 288 ALIGNMENT 0 Y12-15d20.p1k chr05 62 296 1481 1480 F 235 0.00 1195 reject_low 290 ALIGNMENT 0 Y12-15d20.p1k chr09 62 224 1769 1768 F 163 0.00 1195 reject_low 126 ALIGNMENT 0 Y12-15d20.p1k chr07 761 243 1088971 1088970 C 519 0.00 1195 reject_low 28 ALIGNMENT 0 Y12-15d20.p1k chr05 191 761 2058 2057 F 571 0.00 1195 reject_low 279 ALIGNMENT 0 Y12-15d20.p1k chr08 296 62 560831 560830 C 235 0.00 1195 reject_low 300 ALIGNMENT 0 Y12-15d20.p1k chr04 761 511 1530301 1530300 C 251 0.00 1195 reject_low 82 ALIGNMENT 0 Y12-15d20.p1k chr13 385 761 2089 2088 F 377 0.00 1195 reject_low 86 ALIGNMENT 0 Y12-15d20.p1k chr06 335 761 1265 1264 F 427 0.00 1195 reject_low 232 ALIGNMENT 48 Y12-15d20.q1k chr14 107 60 5445 5492 C 48 100.00 1294 reject_low 8,172,179,182,184,186,188,191,194,196,198,200,205,207,209,213,320 ALIGNMENT 629 Y12-15d20.p1k chr02 16 1119 1936 3012 F 1104 87.41 1195 reject_low 15 ALIGNMENT 90 Y12-15d20.p1k chr09 225 510 1769 2054 F 286 77.97 1195 reject_low 126 ALIGNMENT 0 Y12-15d20.p1k chr13 315 761 2091 2090 F 447 0.00 1195 reject_low 237 ALIGNMENT 0 Y12-15d20.p1k chr16 62 188 1494 1493 F 127 0.00 1195 reject_low 199 ALIGNMENT 65 Y12-15d20.p1k chr06 69 140 892 963 F 72 97.22 1195 reject_low 287 ALIGNMENT 122 Y12-15d20.p1k chr08 45 283 1662 1900 F 239 84.52 1195 reject_low 250 ALIGNMENT 0 Y12-15d20.p1k chr09 373 761 2384 2383 F 389 0.00 1195 reject_low 120 ALIGNMENT 887 Y12-15d20.q1k chr10 1103 117 4812 5790 C 987 97.57 1294 reject_low 2 ALIGNMENT 0 Y12-15d20.q1k chr15 108 116 1085783 1085808 F 9 0.00 1294 reject_low 4 ALIGNMENT 0 Y12-15d20.p1k chr16 761 511 946199 946198 C 251 0.00 1195 reject_low 148 ALIGNMENT 0 Y12-15d20.p1k chr12 104 384 7720 7700 F 281 0.00 1195 reject_low 314 ALIGNMENT 0 Y12-15d20.p1k chr15 761 243 1089230 1089229 C 519 0.00 1195 reject_low 39 ALIGNMENT 579 Y12-15d20.p1k chr05 1119 117 574297 575306 C 1003 86.74 1195 reject_low 1 ALIGNMENT 75 Y12-15d20.p1k chr02 225 495 1497 1767 F 271 76.75 1195 reject_low 283 ALIGNMENT 90 Y12-15d20.p1k chr12 225 510 7337 7622 F 286 77.97 1195|9,0 reject_low 307 ALIGNMENT 43 Y12-15d20.p1k chr09 333 514 1769 1950 F 182 75.27 1195 reject_low 145 ALIGNMENT 0 Y12-15d20.p1k chr05 761 385 574896 574895 C 377 0.00 1195 reject_low 152 ALIGNMENT 0 Y12-15d20.q1k chr09 116 108 5808 5833 C 9 0.00 1294 accept_tel 0 ALIGNMENT 0 Y12-15d20.p1k chr13 511 761 1963 1962 F 251 0.00 1195 reject_low 275 ALIGNMENT 148 Y12-15d20.p1k chr12 9 314 1909 2215 F 306 83.66 1195|0,9 reject_low 311 ALIGNMENT 0 Y12-15d20.q1k chr02 116 108 4670 4695 C 9 0.00 1294 reject_low 15 ALIGNMENT 141 Y12-15d20.p1k chr16 458 9 945962 946412 C 450 78.00 1195 reject_low 122 ALIGNMENT 0 Y12-15d20.p1k chr16 171 761 1907 1906 F 591 0.00 1195 reject_low 197 ALIGNMENT 82 Y12-15d20.p1k chr04 170 10 1530064 1530225 C 161 84.47 1195 reject_low 65 ALIGNMENT 42 Y12-15d20.p1k chr16 10 98 1818 1907 F 89 83.15 1195 reject_low 208 ALIGNMENT 74 Y12-15d20.p1k chr12 297 510 1694 1907 F 214 78.97 1195 reject_low 134 ALIGNMENT 0 Y12-15d20.p1k chr02 496 761 1695 1694 F 266 0.00 1195 reject_low 289 ALIGNMENT 25 Y12-15d20.p1k chr12 385 443 7701 7759 F 59 81.36 1195 reject_low 314 ALIGNMENT 822 Y12-15d20.p1k chr09 9 1119 1876 2982 F 1111 92.17 1195 accept_tel 0 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 1894 1893 F 247 0.00 1195 reject_low 238 ALIGNMENT 0 Y12-15d20.p1k chr16 515 761 1855 1854 F 247 0.00 1195 reject_low 195 ALIGNMENT 227 Y12-15d20.p1k chr16 10 384 1530 1905 F 375 87.73 1195 reject_low 173 ALIGNMENT 0 Y12-15d20.p1k chr12 249 171 1070027 1076264 C 79 0.00 1195 reject_low 178 ALIGNMENT 144 Y12-15d20.p1k chr13 9 242 1857 2091 F 234 88.03 1195 reject_low 229 ALIGNMENT 0 Y12-15d20.p1k chr12 515 761 2163 2162 F 247 0.00 1195 reject_low 92 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 2146 2145 F 247 0.00 1195 reject_low 215 ALIGNMENT 78 Y12-15d20.p1k chr16 495 250 946249 946494 C 246 78.05 1195 reject_low 147 ALIGNMENT 0 Y12-15d20.p1k chr08 761 207 560418 560417 C 555 0.00 1195 reject_low 264 ALIGNMENT 438 Y12-15d20.q1k chr13 574 117 3887 4344 C 458 98.91 1294 reject_low 12 ALIGNMENT 0 Y12-15d20.p1k chr12 511 761 7622 7621 F 251 0.00 1195 reject_low 307 ALIGNMENT 0 Y12-15d20.p1k chr07 761 279 1088971 1088970 C 483 0.00 1195 reject_low 26 ALIGNMENT 140 Y12-15d20.p1k chr14 47 350 1695 1998 F 304 82.89 1195 reject_low 186 ALIGNMENT 122 Y12-15d20.p1k chr08 350 47 560417 560720 C 304 80.92 1195 reject_low 254 ALIGNMENT 0 Y12-15d20.q1k chr12 108 116 1066267 1066292 F 9 0.00 1294 reject_low 10 ALIGNMENT 25 Y12-15d20.p1k chr07 443 385 1088961 1089019 C 59 81.36 1195 reject_low 190 ALIGNMENT 118 Y12-15d20.p1k chr12 458 45 1076265 1076678 C 414 77.05 1195 reject_low 43 ALIGNMENT 0 Y12-15d20.p1k chr14 515 761 1946 1945 F 247 0.00 1195 reject_low 194 ALIGNMENT 0 Y12-15d20.p1k chr12 62 384 2166 2165 F 323 0.00 1195 reject_low 151 ALIGNMENT 121 Y12-15d20.p1k chr16 45 458 1494 1907 F 414 77.29 1195 reject_low 192 ALIGNMENT 846 Y12-15d20.q1k chr07 117 1103 1085550 1086527 F 987 96.15 1294 reject_low 5 ALIGNMENT 0 Y12-15d20.p1k chr12 279 761 7750 7749 F 483 0.00 1195 reject_low 93 ALIGNMENT 148 Y12-15d20.p1k chr16 314 9 945962 946268 C 306 83.66 1195 reject_low 112 ALIGNMENT 0 Y12-15d20.p1k chr07 761 511 1089207 1089206 C 251 0.00 1195 reject_low 75 ALIGNMENT 0 Y12-15d20.q1k chr07 1104 1198 1086528 1086605 F 95 0.00 1294 reject_low 5 ALIGNMENT 82 Y12-15d20.p1k chr04 514 250 1530224 1530488 C 265 77.74 1195 reject_low 71 ALIGNMENT 143 Y12-15d20.p1k chr08 278 16 560417 560679 C 263 85.55 1195 reject_low 235 ALIGNMENT 0 Y12-15d20.p1k chr16 207 761 1907 1906 F 555 0.00 1195 reject_low 189 ALIGNMENT 144 Y12-15d20.p1k chr15 314 47 1089229 1089496 C 268 85.45 1195 reject_low 46 ALIGNMENT 89 Y12-15d20.p1k chr10 155 510 1718 2073 F 356 75.84 1195 reject_low 127 ALIGNMENT 0 Y12-15d20.p1k chr07 761 515 1089023 1089022 C 247 0.00 1195 reject_low 41 ALIGNMENT 81 Y12-15d20.p1k chr12 189 514 1694 2019 F 326 75.77 1195 reject_low 130 ALIGNMENT 0 Y12-15d20.p1k chr16 62 140 1482 1481 F 79 0.00 1195 reject_low 195 ALIGNMENT 0 Y12-15d20.p1k chr09 517 761 2240 2239 F 245 0.00 1195 reject_low 88 ALIGNMENT 757 Y12-15d20.p1k chr06 141 1119 892 1848 F 979 93.87 1195 reject_low 11 ALIGNMENT 47 Y12-15d20.q1k chr04 61 107 1526571 1526617 F 47 100.00 1294 reject_low 3,24,34,38,45,47,53,57,61,63,65,67,71,78,80,82,202 ALIGNMENT 0 Y12-15d20.p1k chr15 188 62 1089643 1089642 C 127 0.00 1195 reject_low 64 ALIGNMENT 118 Y12-15d20.p1k chr07 514 141 1089022 1089395 C 374 78.07 1195 reject_low 41 ALIGNMENT 0 Y12-15d20.p1k chr15 761 511 1089466 1089465 C 251 0.00 1195 reject_low 83 ALIGNMENT 576 Y12-15d20.p1k chr04 1119 117 1529468 1530477 C 1003 86.64 1195 reject_low 3 ALIGNMENT 0 Y12-15d20.p1k chr15 761 444 1089221 1089220 C 318 0.00 1195 reject_low 203 ALIGNMENT 116 Y12-15d20.p1k chr12 69 514 1682 2127 F 446 76.23 1195 reject_low 115 ALIGNMENT 137 Y12-15d20.p1k chr12 350 47 1076265 1076568 C 304 82.57 1195|9,0 reject_low 181 ALIGNMENT 161 Y12-15d20.p1k chr12 16 278 1953 2215 F 263 87.83 1195 reject_low 310 ALIGNMENT 0 Y12-15d20.p1k chr10 62 190 1718 1717 F 129 0.00 1195 reject_low 125 ALIGNMENT 99 Y12-15d20.p1k chr12 514 189 1069690 1070015 C 326 77.61 1195|0,9 reject_low 174 ALIGNMENT 147 Y12-15d20.p1k chr16 47 314 1640 1907 F 268 85.82 1195 reject_low 185 ALIGNMENT 0 Y12-15d20.p1k chr12 99 761 7750 7749 F 663 0.00 1195 reject_low 141 ALIGNMENT 0 Y12-15d20.p1k chr05 299 761 2058 2057 F 463 0.00 1195 reject_low 234 ALIGNMENT 121 Y12-15d20.p1k chr13 45 458 1678 2091 F 414 77.29 1195 reject_low 253 ALIGNMENT 145 Y12-15d20.p1k chr02 117 514 1497 1894 F 398 79.65 1195 reject_low 238 ALIGNMENT 0 Y12-15d20.p1k chr14 279 761 1998 1997 F 483 0.00 1195 reject_low 179 ALIGNMENT 0 Y12-15d20.p1k chr05 761 207 574894 574893 C 555 0.00 1195 reject_low 160 ALIGNMENT 144 Y12-15d20.p1k chr12 9 242 1981 2215 F 234 88.03 1195|0,9 reject_low 307 ALIGNMENT 0 Y12-15d20.p1k chr12 384 385 1069652 1076266 C 0 0.00 1195 reject_low 170 ALIGNMENT 0 Y12-15d20.p1k chr04 761 171 1530065 1530064 C 591 0.00 1195 reject_low 65 ALIGNMENT 0 Y12-15d20.p1k chr04 224 62 1530478 1530477 C 163 0.00 1195 reject_low 67 ALIGNMENT 145 Y12-15d20.p1k chr12 141 514 1682 2055 F 374 80.48 1195 reject_low 103 ALIGNMENT 0 Y12-15d20.p1k chr12 306 305 2207 7345 F 0 0.00 1195 reject_low 311 ALIGNMENT 0 Y12-15d20.p1k chr12 62 188 1694 1693 F 127 0.00 1195 reject_low 130 ALIGNMENT 579 Y12-15d20.p1k chr16 117 1119 1494 2503 F 1003 86.74 1195 reject_low 9 ALIGNMENT 25 Y12-15d20.p1k chr08 443 385 560408 560466 C 59 81.36 1195 reject_low 323 ALIGNMENT 227 Y12-15d20.p1k chr07 384 10 1088972 1089347 C 375 87.73 1195 reject_low 22 ALIGNMENT 65 Y12-15d20.p1k chr06 10 226 1048 1265 F 217 77.42 1195 reject_low 285 ALIGNMENT 0 Y12-15d20.p1k chr02 517 761 1932 1931 F 245 0.00 1195 reject_low 257 ALIGNMENT 0 Y12-15d20.p1k chr15 761 515 1089318 1089317 C 247 0.00 1195 reject_low 64 ALIGNMENT 82 Y12-15d20.p1k chr16 250 514 1483 1747 F 265 77.74 1195 reject_low 206 ALIGNMENT 125 Y12-15d20.p1k chr05 69 514 1469 1914 F 446 76.91 1195 reject_low 248 ALIGNMENT 0 Y12-15d20.p1k chr09 259 761 2378 2377 F 503 0.00 1195 reject_low 117 ALIGNMENT 178 Y12-15d20.p1k chr09 9 518 1804 2326 F 510 79.61 1195 reject_low 90 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1069799 1069798 C 247 0.00 1195 reject_low 175,177 ALIGNMENT 151 Y12-15d20.p1k chr10 119 510 1718 2109 F 392 80.36 1195 reject_low 98 ALIGNMENT 0 Y12-15d20.p1k chr08 761 459 560418 560417 C 303 0.00 1195 reject_low 272 ALIGNMENT 438 Y12-15d20.q1k chr12 574 117 4011 4468 C 458 98.91 1294 reject_low 13,19 ALIGNMENT 0 Y12-15d20.p1k chr12 279 296 2216 7336 F 18 0.00 1195 reject_low 310 ALIGNMENT 145 Y12-15d20.p1k chr09 142 510 1758 2126 F 369 80.76 1195 reject_low 104 ALIGNMENT 0 Y12-15d20.p1k chr14 62 296 1585 1584 F 235 0.00 1195 reject_low 209 ALIGNMENT 48 Y12-15d20.q1k chr16 107 60 5354 5401 C 48 100.00 1294 reject_low 9,173,180,183,185,187,189,192,195,197,199,201,206,208,210,214,321 ALIGNMENT 0 Y12-15d20.q1k chr15 1104 1198 1086787 1086864 F 95 0.00 1294 reject_low 4 ALIGNMENT 144 Y12-15d20.p1k chr16 9 242 1673 1907 F 234 88.03 1195 reject_low 183 ALIGNMENT 0 Y12-15d20.p1k chr08 104 761 1900 1899 F 658 0.00 1195 reject_low 274 ALIGNMENT 0 Y12-15d20.p1k chr02 207 761 2414 2413 F 555 0.00 1195 reject_low 263 ALIGNMENT 180 Y12-15d20.p1k chr05 9 516 1480 1988 F 508 79.33 1195 reject_low 220 ALIGNMENT 72 Y12-15d20.p1k chr05 10 190 1877 2058 F 181 80.66 1195 reject_low 279 ALIGNMENT 30 Y12-15d20.p1k chr14 333 510 1585 1762 F 178 73.03 1195 reject_low 213 ALIGNMENT 28 Y12-15d20.p1k chr10 41 99 2228 2286 F 59 83.05 1195 reject_low 150 ALIGNMENT 0 Y12-15d20.p1k chr08 62 332 1662 1661 F 271 0.00 1195 reject_low 284 ALIGNMENT 0 Y12-15d20.p1k chr04 761 444 1530056 1530055 C 318 0.00 1195 reject_low 202 ALIGNMENT 72 Y12-15d20.p1k chr12 103 9 1076296 1076391 C 95 92.63 1195 reject_low 10,176 ALIGNMENT 0 Y12-15d20.q1k chr12 862 575 9547 9546 C 288 0.00 1294 reject_low 18,20 ALIGNMENT 0 Y12-15d20.p1k chr08 176 761 1900 1899 F 586 0.00 1195 reject_low 246 ALIGNMENT 0 Y12-15d20.p1k chr12 761 99 1069603 1069602 C 663 0.00 1195 reject_low 70 ALIGNMENT 215 Y12-15d20.p1k chr02 47 510 1715 2178 F 464 82.97 1195 reject_low 217 ALIGNMENT 120 Y12-15d20.p1k chr02 9 242 2180 2414 F 234 84.62 1195 reject_low 243 ALIGNMENT 0 Y12-15d20.p1k chr08 761 511 560654 560653 C 251 0.00 1195 reject_low 305 ALIGNMENT 0 Y12-15d20.p1k chr13 511 761 1855 1854 F 251 0.00 1195 reject_low 306 ALIGNMENT 0 Y12-15d20.p1k chr10 62 118 1718 1717 F 57 0.00 1195 reject_low 98 ALIGNMENT 76 Y12-15d20.p1k chr10 255 510 1710 1965 F 256 77.34 1195 reject_low 133 ALIGNMENT 0 Y12-15d20.p1k chr13 62 224 1678 1677 F 163 0.00 1195 reject_low 275 ALIGNMENT 115 Y12-15d20.p1k chr02 69 516 1485 1932 F 448 76.12 1195 reject_low 257 ALIGNMENT 121 Y12-15d20.p1k chr12 45 458 7337 7750 F 414 77.29 1195 reject_low 113 ALIGNMENT 0 Y12-15d20.p1k chr15 332 62 1089643 1089642 C 271 0.00 1195 reject_low 83 ALIGNMENT 0 Y12-15d20.p1k chr05 761 243 574894 574893 C 519 0.00 1195 reject_low 157 ALIGNMENT 120 Y12-15d20.p1k chr08 242 9 560417 560651 C 234 84.62 1195 reject_low 244 ALIGNMENT 0 Y12-15d20.p1k chr12 341 342 1070007 1076273 C 0 0.00 1195 reject_low 181 ALIGNMENT 30 Y12-15d20.p1k chr12 510 333 1076501 1076678 C 178 73.03 1195 reject_low 76 ALIGNMENT 107 Y12-15d20.p1k chr05 10 258 1805 2054 F 249 81.93 1195 reject_low 260 ALIGNMENT 0 Y12-15d20.p1k chr13 459 761 2091 2090 F 303 0.00 1195 reject_low 253 ALIGNMENT 0 Y12-15d20.p1k chr14 243 761 1998 1997 F 519 0.00 1195 reject_low 182 ALIGNMENT 0 Y12-15d20.p1k chr12 224 62 1076679 1076678 C 163 0.00 1195 reject_low 56 ALIGNMENT 96 Y12-15d20.p1k chr08 514 189 560505 560830 C 326 77.30 1195 reject_low 270 ALIGNMENT 0 Y12-15d20.p1k chr07 761 351 1088971 1088970 C 411 0.00 1195 reject_low 32 ALIGNMENT 0 Y12-15d20.p1k chr02 505 761 1668 1667 F 257 0.00 1195 reject_low 303 ALIGNMENT 0 Y12-15d20.p1k chr09 335 761 2382 2381 F 427 0.00 1195 reject_low 110 ALIGNMENT 42 Y12-15d20.p1k chr12 10 98 2126 2215 F 89 83.15 1195 reject_low 315 ALIGNMENT 0 Y12-15d20.p1k chr10 227 761 2365 2364 F 535 0.00 1195 reject_low 136 ALIGNMENT 0 Y12-15d20.p1k chr14 99 761 1998 1997 F 663 0.00 1195 reject_low 207 ALIGNMENT 0 Y12-15d20.p1k chr15 761 351 1089230 1089229 C 411 0.00 1195 reject_low 48 ALIGNMENT 0 Y12-15d20.q1k chr15 108 1198 1085783 1086864 F 1091 0.00 1294 reject_low 25,35,39,46,48,54,58,62,64,66,68,72,79,81,83,203 ALIGNMENT 42 Y12-15d20.p1k chr08 98 10 560417 560506 C 89 83.15 1195 reject_low 293 ALIGNMENT 909 Y12-15d20.q1k chr05 60 1103 571416 572450 F 1044 96.55 1294 reject_low 1 ALIGNMENT 0 Y12-15d20.p1k chr15 761 279 1089230 1089229 C 483 0.00 1195 reject_low 35 ALIGNMENT 0 Y12-15d20.p1k chr16 761 459 945963 945962 C 303 0.00 1195 reject_low 122 ALIGNMENT 0 Y12-15d20.p1k chr05 761 315 574894 574893 C 447 0.00 1195 reject_low 158 ALIGNMENT 147 Y12-15d20.p1k chr12 117 510 1694 2087 F 394 79.95 1195 reject_low 101 ALIGNMENT 576 Y12-15d20.p1k chr12 1119 117 1069006 1070015 C 1003 86.64 1195 reject_low 10 ALIGNMENT 0 Y12-15d20.p1k chr02 315 761 2414 2413 F 447 0.00 1195 reject_low 227 ALIGNMENT 0 Y12-15d20.p1k chr08 761 515 560470 560469 C 247 0.00 1195 reject_low 258 ALIGNMENT 164 Y12-15d20.p1k chr02 16 514 1720 2218 F 499 78.36 1195 reject_low 222 ALIGNMENT 25 Y12-15d20.p1k chr14 385 443 1949 2007 F 59 81.36 1195 reject_low 320 ALIGNMENT 0 Y12-15d20.p1k chr07 140 62 1089396 1089395 C 79 0.00 1195 reject_low 41 ALIGNMENT 30 Y12-15d20.p1k chr07 510 333 1089206 1089383 C 178 73.03 1195 reject_low 75 ALIGNMENT 137 Y12-15d20.p1k chr04 350 47 1530064 1530367 C 304 82.57 1195 reject_low 47 ALIGNMENT 42 Y12-15d20.p1k chr04 514 297 1530260 1530477 C 218 73.85 1195 reject_low 80 ALIGNMENT 76 Y12-15d20.p1k chr09 240 514 1748 2022 F 275 76.73 1195 reject_low 132 ALIGNMENT 0 Y12-15d20.p1k chr12 234 233 2207 7345 F 0 0.00 1195 reject_low 307 ALIGNMENT 0 Y12-15d20.p1k chr04 761 351 1530065 1530064 C 411 0.00 1195 reject_low 47 ALIGNMENT 0 Y12-15d20.p1k chr12 171 761 7750 7749 F 591 0.00 1195 reject_low 123 ALIGNMENT 0 Y12-15d20.p1k chr08 224 62 560831 560830 C 163 0.00 1195 reject_low 280 ALIGNMENT 0 Y12-15d20.p1k chr05 761 459 574894 574893 C 303 0.00 1195 reject_low 161 ALIGNMENT 0 Y12-15d20.p1k chr09 62 239 1748 1747 F 178 0.00 1195 reject_low 132 ALIGNMENT 0 Y12-15d20.p1k chr07 761 99 1088971 1088970 C 663 0.00 1195 reject_low 69 ALIGNMENT 25 Y12-15d20.p1k chr16 443 385 945953 946011 C 59 81.36 1195 reject_low 316 ALIGNMENT 0 Y12-15d20.q1k chr04 108 1198 1526618 1527699 F 1091 0.00 1294 reject_low 24,34,38,45,47,53,57,61,63,65,67,71,78,80,82,202 ALIGNMENT 90 Y12-15d20.p1k chr14 225 510 1585 1870 F 286 77.97 1195 reject_low 200 ALIGNMENT 0 Y12-15d20.p1k chr08 444 761 1952 1951 F 318 0.00 1195 reject_low 233 ALIGNMENT 20 Y12-15d20.q1k chr14 1249 1199 4315 4362 C 51 84.31 1294 reject_low 8,172,179,182,184,186,188,191,194,196,198,200,205,207,209,213,320 ALIGNMENT 142 Y12-15d20.p1k chr08 9 256 1661 1909 F 248 86.69 1195 reject_low 230 ALIGNMENT 0 Y12-15d20.p1k chr13 62 140 1666 1665 F 79 0.00 1195 reject_low 259 ALIGNMENT 110 Y12-15d20.p1k chr06 250 516 893 1159 F 267 81.27 1195 reject_low 261 ALIGNMENT 0 Y12-15d20.p1k chr08 62 188 1662 1661 F 127 0.00 1195 reject_low 266 ALIGNMENT 0 Y12-15d20.q1k chr12 954 1198 1067098 1067237 F 245 0.00 1294 reject_low 10 ALIGNMENT 0 Y12-15d20.q1k chr07 108 116 1085524 1085549 F 9 0.00 1294 reject_low 5 ALIGNMENT 0 Y12-15d20.p1k chr04 761 459 1530065 1530064 C 303 0.00 1195 reject_low 57 ALIGNMENT 0 Y12-15d20.p1k chr14 104 384 1968 1948 F 281 0.00 1195 reject_low 320 ALIGNMENT 0 Y12-15d20.p1k chr05 259 761 2054 2053 F 503 0.00 1195 reject_low 260 ALIGNMENT 0 Y12-15d20.q1k chr13 862 575 3888 3887 C 288 0.00 1294 reject_low 12 ALIGNMENT 158 Y12-15d20.p1k chr10 9 408 1967 2367 F 400 80.75 1195 reject_low 95 ALIGNMENT 25 Y12-15d20.p1k chr05 443 385 574884 574942 C 59 81.36 1195 reject_low 319 ALIGNMENT 0 Y12-15d20.p1k chr14 351 761 1998 1997 F 411 0.00 1195 reject_low 186 ALIGNMENT 0 Y12-15d20.p1k chr10 515 761 2185 2184 F 247 0.00 1195 reject_low 97 ALIGNMENT 0 Y12-15d20.p1k chr12 761 315 1069603 1069602 C 447 0.00 1195 reject_low 31 ALIGNMENT 158 Y12-15d20.p1k chr12 278 16 1069602 1069864 C 263 87.45 1195 reject_low 27 ALIGNMENT 0 Y12-15d20.p1k chr05 505 761 1760 1759 F 257 0.00 1195 reject_low 276 ALIGNMENT 0 Y12-15d20.p1k chr10 519 761 2309 2308 F 243 0.00 1195 reject_low 91 ALIGNMENT 0 Y12-15d20.q1k chr13 862 108 4372 4371 C 755 0.00 1294 reject_low 86 ALIGNMENT 161 Y12-15d20.p1k chr13 16 278 1829 2091 F 263 87.83 1195 reject_low 223 ALIGNMENT 0 Y12-15d20.p1k chr14 62 224 1585 1584 F 163 0.00 1195 reject_low 200 ALIGNMENT 429 Y12-15d20.q1k chr02 574 117 4212 4669 C 458 98.25 1294 reject_low 15 ALIGNMENT 42 Y12-15d20.p1k chr12 98 10 1069602 1069691 C 89 83.15 1195 reject_low 70 ALIGNMENT 0 Y12-15d20.p1k chr05 119 761 2058 2057 F 643 0.00 1195 reject_low 297 ALIGNMENT 0 Y12-15d20.p1k chr02 385 761 2412 2411 F 377 0.00 1195 reject_low 84 ALIGNMENT 0 Y12-15d20.p1k chr16 761 207 945963 945962 C 555 0.00 1195 reject_low 124 ALIGNMENT 0 Y12-15d20.p1k chr15 761 171 1089230 1089229 C 591 0.00 1195 reject_low 66 ALIGNMENT 75 Y12-15d20.p1k chr16 103 9 945993 946088 C 95 93.68 1195 reject_low 316 ALIGNMENT 0 Y12-15d20.p1k chr08 62 224 1662 1661 F 163 0.00 1195 reject_low 17 ALIGNMENT 141 Y12-15d20.p1k chr12 242 9 1069602 1069836 C 234 87.61 1195 reject_low 29 ALIGNMENT 0 Y12-15d20.p1k chr10 517 761 2223 2222 F 245 0.00 1195 reject_low 89 ALIGNMENT 0 Y12-15d20.p1k chr08 257 761 1909 1908 F 505 0.00 1195 reject_low 230 ALIGNMENT 0 Y12-15d20.p1k chr05 140 62 575319 575318 C 79 0.00 1195 reject_low 162 ALIGNMENT 30 Y12-15d20.p1k chr16 333 510 1494 1671 F 178 73.03 1195 reject_low 214 ALIGNMENT 0 Y12-15d20.p1k chr13 62 249 1667 1666 F 188 0.00 1195 reject_low 278 ALIGNMENT 114 Y12-15d20.p1k chr12 206 10 1069602 1069799 C 197 86.80 1195 reject_low 37 ALIGNMENT 0 Y12-15d20.p1k chr12 761 459 1069603 1069602 C 303 0.00 1195 reject_low 42 ALIGNMENT 114 Y12-15d20.p1k chr12 206 10 1076265 1076462 C 197 86.80 1195|9,0 reject_low 174 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 2218 2217 F 247 0.00 1195 reject_low 222 ALIGNMENT 42 Y12-15d20.p1k chr07 514 297 1089166 1089383 C 218 73.85 1195 reject_low 73 ALIGNMENT 0 Y12-15d20.p1k chr13 62 188 1678 1677 F 127 0.00 1195 reject_low 271 ALIGNMENT 90 Y12-15d20.p1k chr15 510 225 1089357 1089642 C 286 77.97 1195 reject_low 68 ALIGNMENT 105 Y12-15d20.p1k chr10 9 258 2111 2361 F 250 81.60 1195 reject_low 118 ALIGNMENT 0 Y12-15d20.p1k chr08 464 761 1936 1935 F 298 0.00 1195 reject_low 266 ALIGNMENT 0 Y12-15d20.p1k chr02 515 761 2326 2325 F 247 0.00 1195 reject_low 216 ALIGNMENT 0 Y12-15d20.p1k chr16 761 515 946015 946014 C 247 0.00 1195 reject_low 99 ALIGNMENT 156 Y12-15d20.p1k chr02 10 350 2073 2414 F 341 82.70 1195 reject_low 225 ALIGNMENT 234 Y12-15d20.p1k chr02 10 514 1857 2362 F 505 82.97 1195 reject_low 212 ALIGNMENT 0 Y12-15d20.p1k chr16 243 761 1907 1906 F 519 0.00 1195 reject_low 183 ALIGNMENT 123 Y12-15d20.p1k chr08 314 47 560417 560684 C 268 82.84 1195 reject_low 251 ALIGNMENT 0 Y12-15d20.p1k chr14 385 761 1996 1995 F 377 0.00 1195 reject_low 172 ALIGNMENT 137 Y12-15d20.p1k chr15 350 47 1089229 1089532 C 304 82.57 1195 reject_low 48 ALIGNMENT 0 Y12-15d20.p1k chr12 342 341 2207 7345 F 0 0.00 1195 reject_low 313 ALIGNMENT 0 Y12-15d20.p1k chr12 761 511 1069731 1069730 C 251 0.00 1195 reject_low 171 ALIGNMENT 0 Y12-15d20.p1k chr04 384 104 1530114 1530094 C 281 0.00 1195 reject_low 202 ALIGNMENT 0 Y12-15d20.p1k chr12 62 140 1682 1681 F 79 0.00 1195 reject_low 103 ALIGNMENT 0 Y12-15d20.p1k chr04 761 515 1530117 1530116 C 247 0.00 1195 reject_low 61 ALIGNMENT 0 Y12-15d20.p1k chr15 140 62 1089655 1089654 C 79 0.00 1195 reject_low 62 ALIGNMENT 585 Y12-15d20.p1k chr08 1119 117 559819 560830 C 1003 87.04 1195 reject_low 14 ALIGNMENT 114 Y12-15d20.p1k chr15 206 10 1089229 1089426 C 197 86.80 1195 reject_low 54 ALIGNMENT 0 Y12-15d20.p1k chr09 511 761 2054 2053 F 251 0.00 1195 reject_low 126 ALIGNMENT 576 Y12-15d20.p1k chr15 1119 117 1088633 1089642 C 1003 86.64 1195 reject_low 4 ALIGNMENT 0 Y12-15d20.q1k chr08 108 862 558135 558134 F 755 0.00 1294 reject_low 87 ALIGNMENT 0 Y12-15d20.p1k chr06 62 439 903 902 F 378 0.00 1195 reject_low 299 ALIGNMENT 0 Y12-15d20.p1k chr02 279 761 2414 2413 F 483 0.00 1195 reject_low 231 ALIGNMENT 0 Y12-15d20.p1k chr05 227 761 2058 2057 F 535 0.00 1195 reject_low 262 ALIGNMENT 438 Y12-15d20.q1k chr08 574 117 3743 4200 C 458 98.91 1294 reject_low 17 ALIGNMENT 0 Y12-15d20.q1k chr16 1198 108 4272 5353 C 1091 0.00 1294 reject_low 173,180,183,185,187,189,192,195,197,199,201,206,208,210,214,321 ALIGNMENT 0 Y12-15d20.p1k chr13 515 761 2039 2038 F 247 0.00 1195 reject_low 259 ALIGNMENT 0 Y12-15d20.p1k chr16 761 315 945963 945962 C 447 0.00 1195 reject_low 112 ALIGNMENT 0 Y12-15d20.p1k chr16 315 761 1907 1906 F 447 0.00 1195 reject_low 185 ALIGNMENT 0 Y12-15d20.p1k chr05 332 62 575307 575306 C 271 0.00 1195 reject_low 169 ALIGNMENT 0 Y12-15d20.p1k chr13 62 116 1678 1677 F 55 0.00 1195 reject_low 12 ALIGNMENT 86 Y12-15d20.p1k chr09 189 510 1769 2090 F 322 76.40 1195 reject_low 129 ALIGNMENT 0 Y12-15d20.q1k chr12 862 108 4496 4495 C 755 0.00 1294 reject_low 92,101,103,105,115,130,134,137,138,144,151 ALIGNMENT 0 Y12-15d20.q1k chr12 116 108 10004 10029 C 9 0.00 1294 reject_low 18,20 ALIGNMENT 0 Y12-15d20.p1k chr05 761 444 574885 574884 C 318 0.00 1195 reject_low 319 ALIGNMENT 0 Y12-15d20.p1k chr05 761 511 575022 575021 C 251 0.00 1195 reject_low 165 ALIGNMENT 65 Y12-15d20.p1k chr09 297 510 1769 1982 F 214 77.57 1195 reject_low 139 ALIGNMENT 96 Y12-15d20.p1k chr16 189 514 1494 1819 F 326 77.30 1195 reject_low 199 ALIGNMENT 147 Y12-15d20.p1k chr14 47 314 1731 1998 F 268 85.82 1195 reject_low 184 ALIGNMENT 0 Y12-15d20.q1k chr12 862 108 10031 10030 C 755 0.00 1294 reject_low 93,96,102,106,108,113,123,141,307,308,309,310,311,312,313,314,315 ALIGNMENT 0 Y12-15d20.p1k chr14 511 761 1762 1761 F 251 0.00 1195 reject_low 213 ALIGNMENT 0 Y12-15d20.p1k chr16 761 511 946271 946270 C 251 0.00 1195 reject_low 146 ALIGNMENT 0 Y12-15d20.p1k chr13 62 296 1678 1677 F 235 0.00 1195 reject_low 301 ALIGNMENT 0 Y12-15d20.p1k chr06 141 761 963 962 F 621 0.00 1195 reject_low 287 ALIGNMENT 224 Y12-15d20.p1k chr12 384 10 1076267 1076642 C 375 87.47 1195 reject_low 170 ALIGNMENT 0 Y12-15d20.p1k chr02 62 296 1497 1496 F 235 0.00 1195 reject_low 289 ALIGNMENT 25 Y12-15d20.p1k chr13 385 443 2042 2100 F 59 81.36 1195 reject_low 324 ALIGNMENT 0 Y12-15d20.p1k chr12 761 515 1069763 1069762 C 247 0.00 1195 reject_low 178 ALIGNMENT 141 Y12-15d20.p1k chr15 242 9 1089229 1089463 C 234 87.61 1195 reject_low 39 ALIGNMENT 0 Y12-15d20.p1k chr10 259 761 2361 2360 F 503 0.00 1195 reject_low 118 ALIGNMENT 0 Y12-15d20.q1k chr12 116 108 4469 4494 C 9 0.00 1294 reject_low 13,19 ALIGNMENT 0 Y12-15d21.q1k chr04 534 62 218370 218369 C 473 0.00 1284 reject_low 1 ALIGNMENT 828 Y12-15d21.q1k chr04 970 34 118098 119021 C 937 98.19 1284 accept 0 ALIGNMENT 506 Y12-15d21.p1k chr04 1 837 114025 114845 F 837 88.53 1169 accept 0 ALIGNMENT 315 Y12-15d21.q1k chr04 901 535 218009 218369 C 367 97.28 1284 reject_low 1 ALIGNMENT 946 Y12-15d22.p1k chr04 20 1181 1468401 1469566 F 1162 94.15 1181 accept 0 ALIGNMENT 959 Y12-15d23.q1k chr07 35 1235 628273 629481 F 1201 94.67 1316 accept 0 ALIGNMENT 962 Y12-15d23.p1k chr07 1184 19 633058 634223 C 1166 95.63 1196 accept 0 ALIGNMENT 920 Y12-15d24.q1k chr11 39 1193 618159 619312 F 1155 94.63 1315 accept_chi 0 ALIGNMENT 853 Y12-15d24.p1k chr07 982 14 459939 460896 C 969 97.32 1223 accept_chi 1 ALIGNMENT 483 Y12-15e01.p1k chr15 650 39 166468 167073 C 612 94.61 1411 accept 0 ALIGNMENT 838 Y12-15e01.q1k chr15 33 942 162583 163490 F 910 97.80 1375 accept 0 ALIGNMENT 909 Y12-15e02.q1k chr05 30 1081 233598 234650 F 1052 96.86 1348 accept 0 ALIGNMENT 651 Y12-15e02.p1k chr05 780 1 236523 237298 C 780 95.26 1226 accept 0 ALIGNMENT 249 Y12-15e03.p1k chr08 237 849 471332 471944 F 613 80.59 1255 reject_low 1 ALIGNMENT 991 Y12-15e03.p1k chr07 11 1211 1004783 1005968 F 1201 95.59 1255 accept 0 ALIGNMENT 962 Y12-15e03.q1k chr07 1169 34 1009181 1010333 C 1136 95.86 1359 accept 0 ALIGNMENT 0 Y12-15e03.p1k chr08 62 236 471332 471331 F 175 0.00 1255 reject_low 1 ALIGNMENT 980 Y12-15e04.p1k chr12 1208 19 145024 146212 C 1190 95.46 1235 accept 1 ALIGNMENT 1037 Y12-15e04.q1k chr02 1285 37 24420 25679 C 1249 94.96 1401 ambiguous_tel 0 ALIGNMENT 980 Y12-15e05.q1k chr02 1234 33 781955 783167 C 1202 95.09 1335 accept 0 ALIGNMENT 849 Y12-15e05.p1k chr02 1 1000 778027 779015 F 1000 96.90 1326 accept 0 ALIGNMENT 0 Y12-15e06.p1k chr09 899 937 425239 425239 F 39 0.00 1333 accept 0 ALIGNMENT 59 Y12-15e06.p1k chr09 938 1097 425240 425395 F 160 82.50 1333 accept 0 ALIGNMENT 835 Y12-15e06.p1k chr09 17 898 424354 425238 F 882 98.64 1333 accept 0 ALIGNMENT 816 Y12-15e06.q1k chr09 1110 29 427837 428935 C 1082 93.35 1357 accept 0 ALIGNMENT 167 Y12-15e07.q1k chr08 534 41 442038 442526 C 494 79.55 1387 accept_chi 1 ALIGNMENT 913 Y12-15e07.p1k chr04 1213 13 1283592 1284790 C 1201 93.92 1281 accept_chi 0 ALIGNMENT 919 Y12-15e08.q1k chr15 1099 39 544622 545684 C 1061 96.89 1411 accept 0 ALIGNMENT 874 Y12-15e08.p1k chr15 1 1037 541334 542352 F 1037 96.62 1333 accept 0 ALIGNMENT 1025 Y12-15e09.q1k chr15 1236 36 414759 415953 C 1201 96.25 1432 accept 0 ALIGNMENT 814 Y12-15e09.p1k chr15 2 937 411456 412383 F 936 97.22 1348 accept 0 ALIGNMENT 848 Y12-15e10.p1k chr09 1078 6 281817 282874 C 1073 95.15 1244 accept 0 ALIGNMENT 932 Y12-15e10.q1k chr09 35 1054 279107 280129 F 1020 98.53 1367 accept 0 ALIGNMENT 205 Y12-15e11.p1k chr03 422 19 314042 314446 C 404 84.65 1295 reject_low 4 ALIGNMENT 0 Y12-15e11.p1k chr03 838 423 314043 314042 C 416 0.00 1295 reject_low 4 ALIGNMENT 0 Y12-15e11.p1k chr06 564 838 15407 15406 F 275 0.00 1295 reject_low 2 ALIGNMENT 1009 Y12-15e11.q1k chr14 1168 28 21020 22172 C 1141 97.28 1329 accept 0 ALIGNMENT 279 Y12-15e11.p1k chr06 19 563 14863 15407 F 545 84.40 1295 reject_low 2 ALIGNMENT 1076 Y12-15e11.p1k chr14 19 1287 16679 17956 F 1269 95.82 1295 accept 0 ALIGNMENT 0 Y12-15e11.p1k chr10 838 565 727080 727079 C 274 0.00 1295 reject_low 3 ALIGNMENT 257 Y12-15e11.p1k chr10 564 20 727079 727624 C 545 82.94 1295 reject_low 3 ALIGNMENT 504 Y12-15e11.p1k chr04 19 880 18135 19001 F 862 87.12 1295 reject_low 1 ALIGNMENT 917 Y12-15e12.q1k chr04 37 1067 481068 482093 F 1031 97.48 1364 accept 0 ALIGNMENT 856 Y12-15e12.p1k chr04 940 3 484714 485639 C 938 98.29 1325 accept 0 ALIGNMENT 831 Y12-15e14.p1k chr07 11 1016 598878 599856 F 1006 95.92 1314 accept 0 ALIGNMENT 970 Y12-15e14.q1k chr07 1183 31 603636 604787 C 1153 95.84 1342 accept 0 ALIGNMENT 1003 Y12-15e15.p1k chr09 14 1167 364792 365956 F 1154 96.88 1212 accept 0 ALIGNMENT 1030 Y12-15e15.q1k chr09 1202 30 365057 366250 C 1173 96.68 1298 accept 0 ALIGNMENT 839 Y12-15e17.p1k chr11 1106 43 66864 67911 C 1064 94.74 1285 reject_bad_break 0 ALIGNMENT 26 Y12-15e17.q1k chr11 656 968 63945 64251 F 313 84.98 1287 reject_low 2 ALIGNMENT 0 Y12-15e17.q1k chr11 62 655 63945 63944 F 594 0.00 1287 reject_low 2 ALIGNMENT 937 Y12-15e17.q1k chr11 40 1164 63422 64549 F 1125 97.33 1287 reject_bad_break 0 ALIGNMENT 0 Y12-15e17.q1k chr11 62 563 64039 64038 F 502 0.00 1287 reject_low 1 ALIGNMENT 27 Y12-15e17.p1k chr11 42 5 67924 67963 C 38 92.11 1285 reject_bad_break 0 ALIGNMENT 0 Y12-15e17.p1k chr11 42 43 67912 67923 C 0 0.00 1285 reject_bad_break 0 ALIGNMENT 53 Y12-15e17.q1k chr11 564 870 64039 64347 F 307 85.99 1287 reject_low 1 ALIGNMENT 903 Y12-15e18.q1k chr14 34 1142 381924 383048 F 1109 95.67 1299 accept 0 ALIGNMENT 946 Y12-15e18.p1k chr14 1099 12 387339 388420 C 1088 97.24 1267 accept 0 ALIGNMENT 530 Y12-15e19.p1k chr11 864 7 330896 331744 C 858 89.28 1117 accept 0 ALIGNMENT 717 Y12-15e19.q1k chr11 35 1005 327763 328719 F 971 92.79 1305 accept 0 ALIGNMENT 915 Y12-15e20.q1k chr06 33 1086 82378 83429 F 1054 96.96 1301 accept 0 ALIGNMENT 1044 Y12-15e20.p1k chr06 1218 21 85492 86698 C 1198 96.49 1221 accept 0 ALIGNMENT 836 Y12-15e21.q1k chr15 1006 30 950550 951517 C 977 97.03 1240 accept 0 ALIGNMENT 1048 Y12-15e21.p1k chr15 13 1200 948101 949297 F 1188 96.80 1201 accept 0 ALIGNMENT 973 Y12-15e23.p1k chr12 16 1151 1039577 1040720 F 1136 96.65 1162 accept 0 ALIGNMENT 990 Y12-15e23.q1k chr12 1199 36 1043186 1044350 C 1164 96.22 1199 accept 0 ALIGNMENT 884 Y12-15e24.q1k chr15 1075 31 654587 655620 C 1045 96.84 1220 accept 0 ALIGNMENT 981 Y12-15e24.p1k chr15 20 1190 649739 650906 F 1171 95.56 1190 accept 0 ALIGNMENT 0 Y12-15f01.p1k chr08 113 489 389512 389511 F 377 0.00 1258 reject_low 17 ALIGNMENT 104 Y12-15f01.p1k chr04 113 1 981164 981276 C 113 100.00 1258 reject_low 10 ALIGNMENT 0 Y12-15f01.p1k chr15 113 489 710024 710023 F 377 0.00 1258 reject_low 22 ALIGNMENT 104 Y12-15f01.p1k chr07 113 1 811451 811563 C 113 100.00 1258 reject_low 11 ALIGNMENT 103 Y12-15f01.p1k chr05 1 112 135828 135939 F 112 100.00 1258 reject_low 15 ALIGNMENT 100 Y12-15f01.p1k chr16 1 115 810447 810561 F 115 98.26 1258 reject_low 24 ALIGNMENT 100 Y12-15f01.p1k chr09 327 112 205217 205422 C 216 85.19 1258 reject_low 2 ALIGNMENT 0 Y12-15f01.p1k chr09 111 62 210511 210510 C 50 0.00 1258 reject_low 3 ALIGNMENT 103 Y12-15f01.p1k chr15 1 112 704285 704396 F 112 100.00 1258 reject_low 21 ALIGNMENT 107 Y12-15f01.p1k chr08 1 120 91984 92103 F 120 99.17 1258 reject_low 5 ALIGNMENT 103 Y12-15f01.p1k chr09 112 1 246217 246328 C 112 100.00 1258 reject_low 18 ALIGNMENT 0 Y12-15f01.p1k chr09 489 328 210306 210305 C 162 0.00 1258 reject_low 3 ALIGNMENT 0 Y12-15f01.p1k chr04 489 114 981165 981164 C 376 0.00 1258 reject_low 10 ALIGNMENT 0 Y12-15f01.p1k chr09 111 62 205423 205422 C 50 0.00 1258 reject_low 2 ALIGNMENT 0 Y12-15f01.p1k chr10 118 489 204040 204039 F 372 0.00 1258 reject_low 8 ALIGNMENT 0 Y12-15f01.p1k chr01 113 489 160575 160574 F 377 0.00 1258 reject_low 25 ALIGNMENT 0 Y12-15f01.p1k chr01 489 328 182615 182614 C 162 0.00 1258 reject_low 4 ALIGNMENT 27 Y12-15f01.p1k chr10 31 79 537900 537948 F 49 87.76 1258 reject_low 29 ALIGNMENT 0 Y12-15f01.p1k chr05 113 489 135939 135938 F 377 0.00 1258 reject_low 15 ALIGNMENT 100 Y12-15f01.p1k chr01 327 112 182614 182819 C 216 85.19 1258|0,1 reject_low 4 ALIGNMENT 0 Y12-15f01.p1k chr10 489 59 204037 204036 C 431 0.00 1258 reject_low 30 ALIGNMENT 0 Y12-15f01.p1k chr12 111 62 793768 793767 C 50 0.00 1258 accept_chi 1 ALIGNMENT 32 Y12-15f01.p1k chr01 112 42 183136 183206 C 71 84.51 1258 reject_low 28 ALIGNMENT 765 Y12-15f01.q1k chr15 861 31 47049 47879 C 831 98.19 1415 accept_chi 0 ALIGNMENT 0 Y12-15f01.p1k chr01 489 113 183137 183136 C 377 0.00 1258 reject_low 28 ALIGNMENT 107 Y12-15f01.p1k chr10 117 1 538012 538128 C 117 100.00 1258 reject_low 7 ALIGNMENT 103 Y12-15f01.p1k chr08 1 112 389401 389512 F 112 100.00 1258 reject_low 17 ALIGNMENT 0 Y12-15f01.p1k chr15 489 113 970283 970282 C 377 0.00 1258 reject_low 23 ALIGNMENT 0 Y12-15f01.p1k chr07 489 114 811452 811451 C 376 0.00 1258 reject_low 11 ALIGNMENT 0 Y12-15f01.p1k chr06 489 113 143536 143535 C 377 0.00 1258 reject_low 16 ALIGNMENT 103 Y12-15f01.p1k chr03 1 112 168817 168928 F 112 100.00 1258 reject_low 12 ALIGNMENT 103 Y12-15f01.p1k chr06 112 1 143535 143646 C 112 100.00 1258 reject_low 16 ALIGNMENT 484 Y12-15f01.p1k chr12 690 112 793190 793767 C 579 95.51 1258 accept_chi 1 ALIGNMENT 103 Y12-15f01.p1k chr14 1 112 562254 562365 F 112 100.00 1258 reject_low 20 ALIGNMENT 20 Y12-15f01.p1k chr10 58 1 204036 204094 C 58 81.03 1258 reject_low 30 ALIGNMENT 97 Y12-15f01.p1k chr01 1 112 160464 160575 F 112 98.21 1258 reject_low 25 ALIGNMENT 0 Y12-15f01.p1k chr10 80 489 537948 537947 F 410 0.00 1258 reject_low 29 ALIGNMENT 0 Y12-15f01.p1k chr15 113 489 704396 704395 F 377 0.00 1258 reject_low 21 ALIGNMENT 0 Y12-15f01.p1k chr01 112 113 182819 189419 C 0 0.00 1258 reject_low 4 ALIGNMENT 97 Y12-15f01.p1k chr01 1 112 166052 166163 F 112 98.21 1258 reject_low 26 ALIGNMENT 104 Y12-15f01.p1k chr10 1 117 203924 204040 F 117 99.15 1258 reject_low 8 ALIGNMENT 103 Y12-15f01.p1k chr06 116 1 137904 138019 C 116 99.14 1258 reject_low 9 ALIGNMENT 0 Y12-15f01.p1k chr14 113 489 562365 562364 F 377 0.00 1258 reject_low 20 ALIGNMENT 106 Y12-15f01.p1k chr15 118 1 664808 664925 C 118 99.15 1258 reject_low 6 ALIGNMENT 0 Y12-15f01.p1k chr15 489 119 664809 664808 C 371 0.00 1258 reject_low 6 ALIGNMENT 103 Y12-15f01.p1k chr15 112 1 970282 970393 C 112 100.00 1258 reject_low 23 ALIGNMENT 103 Y12-15f01.p1k chr04 1 112 645719 645830 F 112 100.00 1258 reject_low 13 ALIGNMENT 0 Y12-15f01.p1k chr08 121 489 92103 92102 F 369 0.00 1258 reject_low 5 ALIGNMENT 0 Y12-15f01.p1k chr16 113 489 804974 804973 F 377 0.00 1258 reject_low 27 ALIGNMENT 0 Y12-15f01.p1k chr10 489 118 538013 538012 C 372 0.00 1258 reject_low 7 ALIGNMENT 103 Y12-15f01.p1k chr04 1 112 878520 878631 F 112 100.00 1258 reject_low 14 ALIGNMENT 0 Y12-15f01.p1k chr03 113 489 168928 168927 F 377 0.00 1258 reject_low 12 ALIGNMENT 0 Y12-15f01.p1k chr04 113 489 645830 645829 F 377 0.00 1258 reject_low 13 ALIGNMENT 0 Y12-15f01.p1k chr04 113 489 878631 878630 F 377 0.00 1258 reject_low 14 ALIGNMENT 0 Y12-15f01.p1k chr09 489 113 246218 246217 C 377 0.00 1258 reject_low 18 ALIGNMENT 97 Y12-15f01.p1k chr16 1 112 804863 804974 F 112 98.21 1258 reject_low 27 ALIGNMENT 0 Y12-15f01.p1k chr16 116 489 810561 810560 F 374 0.00 1258 reject_low 24 ALIGNMENT 103 Y12-15f01.p1k chr15 1 112 709913 710024 F 112 100.00 1258 reject_low 22 ALIGNMENT 95 Y12-15f01.p1k chr01 112 8 189420 189524 C 105 99.05 1258 reject_low 4 ALIGNMENT 0 Y12-15f01.p1k chr01 113 489 166163 166162 F 377 0.00 1258 reject_low 26 ALIGNMENT 0 Y12-15f01.p1k chr12 113 489 732002 732001 F 377 0.00 1258 reject_low 19 ALIGNMENT 0 Y12-15f01.p1k chr09 489 328 205218 205217 C 162 0.00 1258 reject_low 2 ALIGNMENT 0 Y12-15f01.p1k chr06 489 117 137905 137904 C 373 0.00 1258 reject_low 9 ALIGNMENT 100 Y12-15f01.p1k chr09 327 112 210305 210510 C 216 85.19 1258 reject_low 3 ALIGNMENT 103 Y12-15f01.p1k chr12 1 112 731891 732002 F 112 100.00 1258 reject_low 19 ALIGNMENT 971 Y12-15f02.q1k chr16 1193 37 759438 760605 C 1157 95.76 1354 accept 0 ALIGNMENT 980 Y12-15f02.p1k chr16 23 1210 756203 757393 F 1188 94.78 1239 accept 0 ALIGNMENT 873 Y12-15f03.q1k chr12 33 1070 452281 453318 F 1038 94.99 1307 accept 0 ALIGNMENT 0 Y12-15f03.q1k chr12 329 817 490543 490542 F 489 0.00 1307 reject_low 3 ALIGNMENT 873 Y12-15f03.q1k chr12 33 1070 461418 462455 F 1038 94.99 1307 accept 1 ALIGNMENT 279 Y12-15f03.q1k chr12 33 328 490249 490543 F 296 98.31 1307 reject_low 3 ALIGNMENT 742 Y12-15f03.p1k chr12 1065 35 465342 466365 C 1031 91.56 1241 accept 0,1 ALIGNMENT 738 Y12-15f03.p1k chr12 1056 35 456213 457228 C 1022 91.59 1241 reject_low 2 ALIGNMENT 596 Y12-15f04.p1k chr16 723 14 641619 642325 C 710 96.76 1386 accept 0 ALIGNMENT 973 Y12-15f04.q1k chr16 34 1115 638120 639207 F 1082 97.50 1353 accept 0 ALIGNMENT 947 Y12-15f05.p1k chr10 18 1208 436104 437304 F 1191 95.05 1288 accept 0 ALIGNMENT 999 Y12-15f05.q1k chr10 1153 36 439816 440945 C 1118 97.67 1317 accept 0 ALIGNMENT 608 Y12-15f06.p1k chr11 2 784 157230 158003 F 783 94.00 1284 accept 0 ALIGNMENT 955 Y12-15f06.q1k chr11 1152 36 160427 161553 C 1117 96.24 1370 accept 0 ALIGNMENT 845 Y12-15f07.q1k chr10 35 1012 699155 700127 F 978 96.42 1419 accept 0 ALIGNMENT 1032 Y12-15f07.p1k chr10 1221 16 703267 704470 C 1206 95.94 1276 accept 0 ALIGNMENT 838 Y12-15f08.q1k chr05 1002 34 139346 140328 C 969 97.52 1286 accept 0 ALIGNMENT 1011 Y12-15f08.p1k chr05 20 1228 133998 135197 F 1209 95.45 1271 accept 0 ALIGNMENT 0 Y12-15f09.p1k chr10 429 62 378356 378355 C 368 0.00 1283 reject_low 14 ALIGNMENT 79 Y12-15f09.p1k chr13 431 509 420582 420660 F 79 100.00 1283 reject_low 9 ALIGNMENT 0 Y12-15f09.p1k chr13 62 430 420582 420581 F 369 0.00 1283 reject_low 9 ALIGNMENT 0 Y12-15f09.p1k chr07 62 429 73822 73821 F 368 0.00 1283 reject_low 11 ALIGNMENT 75 Y12-15f09.p1k chr07 429 510 412290 412371 F 82 97.56 1283 reject_low 10 ALIGNMENT 0 Y12-15f09.p1k chr12 518 634 687942 687941 F 117 0.00 1283 reject_low 4 ALIGNMENT 77 Y12-15f09.p1k chr07 430 510 73822 73902 F 81 98.77 1283 reject_low 11 ALIGNMENT 0 Y12-15f09.p1k chr11 634 510 379324 379323 C 125 0.00 1283 reject_low 15 ALIGNMENT 0 Y12-15f09.p1k chr15 522 634 663896 663895 F 113 0.00 1283 reject_low 3 ALIGNMENT 0 Y12-15f09.p1k chr15 634 615 664016 664015 C 20 0.00 1283 reject_low 2 ALIGNMENT 0 Y12-15f09.p1k chr11 511 634 307863 307862 F 124 0.00 1283 reject_low 12 ALIGNMENT 0 Y12-15f09.p1k chr15 572 62 664057 664056 C 511 0.00 1283 reject_low 2 ALIGNMENT 80 Y12-15f09.p1k chr13 430 510 372438 372518 F 81 100.00 1283 reject_low 6 ALIGNMENT 25 Y12-15f09.p1k chr15 614 573 664015 664056 C 42 88.10 1283 reject_low 2 ALIGNMENT 78 Y12-15f09.p1k chr08 430 511 85288 85369 F 82 98.78 1283 reject_low 8 ALIGNMENT 0 Y12-15f09.p1k chr13 511 634 586709 586708 F 124 0.00 1283 reject_low 7 ALIGNMENT 0 Y12-15f09.p1k chr13 62 429 372438 372437 F 368 0.00 1283 reject_low 6 ALIGNMENT 0 Y12-15f09.p1k chr05 634 510 438697 438696 C 125 0.00 1283 reject_low 13 ALIGNMENT 0 Y12-15f09.p1k chr05 429 62 438776 438775 C 368 0.00 1283 reject_low 13 ALIGNMENT 727 Y12-15f09.p1k chr05 927 3 469038 469966 C 925 94.49 1283 accept_chi 1 ALIGNMENT 76 Y12-15f09.p1k chr05 509 430 438696 438775 C 80 98.75 1283 reject_low 13 ALIGNMENT 0 Y12-15f09.p1k chr11 435 62 379397 379396 C 374 0.00 1283 reject_low 15 ALIGNMENT 872 Y12-15f09.q1k chr04 1079 34 443444 444479 C 1046 96.56 1462 accept_chi 0 ALIGNMENT 0 Y12-15f09.p1k chr07 62 428 412290 412289 F 367 0.00 1283 reject_low 10 ALIGNMENT 0 Y12-15f09.p1k chr13 62 429 586629 586628 F 368 0.00 1283 reject_low 7 ALIGNMENT 80 Y12-15f09.p1k chr13 430 510 586629 586709 F 81 100.00 1283 reject_low 7 ALIGNMENT 0 Y12-15f09.p1k chr12 62 428 687854 687853 F 367 0.00 1283 reject_low 4 ALIGNMENT 80 Y12-15f09.p1k chr15 431 521 663807 663896 F 91 96.70 1283 reject_low 3 ALIGNMENT 0 Y12-15f09.p1k chr08 512 634 85369 85368 F 123 0.00 1283 reject_low 8 ALIGNMENT 0 Y12-15f09.p1k chr13 511 634 372518 372517 F 124 0.00 1283 reject_low 6 ALIGNMENT 82 Y12-15f09.p1k chr12 429 517 687854 687942 F 89 97.75 1283 reject_low 4 ALIGNMENT 0 Y12-15f09.p1k chr07 634 511 823487 823486 C 124 0.00 1283 reject_low 5 ALIGNMENT 76 Y12-15f09.p1k chr10 509 430 378276 378355 C 80 98.75 1283 reject_low 14 ALIGNMENT 0 Y12-15f09.p1k chr10 634 510 378277 378276 C 125 0.00 1283 reject_low 14 ALIGNMENT 77 Y12-15f09.p1k chr11 430 510 307783 307863 F 81 98.77 1283 reject_low 12 ALIGNMENT 0 Y12-15f09.p1k chr08 62 429 85288 85287 F 368 0.00 1283 reject_low 8 ALIGNMENT 0 Y12-15f09.p1k chr11 62 429 307783 307782 F 368 0.00 1283 reject_low 12 ALIGNMENT 0 Y12-15f09.p1k chr07 511 634 412371 412370 F 124 0.00 1283 reject_low 10 ALIGNMENT 74 Y12-15f09.p1k chr11 509 436 379323 379396 C 74 100.00 1283 reject_low 15 ALIGNMENT 0 Y12-15f09.p1k chr15 62 430 663807 663806 F 369 0.00 1283 reject_low 3 ALIGNMENT 0 Y12-15f09.p1k chr13 510 634 420660 420659 F 125 0.00 1283 reject_low 9 ALIGNMENT 0 Y12-15f09.p1k chr07 429 62 823567 823566 C 368 0.00 1283 reject_low 5 ALIGNMENT 0 Y12-15f09.p1k chr07 511 634 73902 73901 F 124 0.00 1283 reject_low 11 ALIGNMENT 80 Y12-15f09.p1k chr07 510 430 823486 823566 C 81 100.00 1283 reject_low 5 ALIGNMENT 808 Y12-15f11.p1k chr13 972 1 395002 395970 C 972 95.58 1270 accept 0 ALIGNMENT 986 Y12-15f11.q1k chr13 39 1192 391112 392279 F 1154 96.45 1344 accept 0 ALIGNMENT 1023 Y12-15f12.q1k chr12 36 1209 462757 463935 F 1174 96.51 1368 accept 1 ALIGNMENT 842 Y12-15f12.p1k chr12 972 6 466904 467865 C 967 96.69 1291 accept 1 ALIGNMENT 842 Y12-15f12.p1k chr12 972 6 457767 458728 C 967 96.69 1291 accept 0 ALIGNMENT 1023 Y12-15f12.q1k chr12 36 1209 453620 454798 F 1174 96.51 1368 accept 0 ALIGNMENT 1018 Y12-15f13.q1k chr09 1228 34 24362 25548 C 1195 95.98 1350 accept 0 ALIGNMENT 116 Y12-15f13.p1k chr10 2 168 21064 21229 F 167 90.42 1211 reject_low 4 ALIGNMENT 638 Y12-15f13.p1k chr15 2 808 26839 27639 F 807 94.67 1211 reject_low 1 ALIGNMENT 136 Y12-15f13.q1k chr09 288 34 25504 25758 C 255 85.88 1350 reject_low 9 ALIGNMENT 368 Y12-15f13.q1k chr15 1173 228 29840 30775 C 946 80.66 1350 reject_low 1 ALIGNMENT 0 Y12-15f13.q1k chr09 895 247 25295 25294 C 649 0.00 1350 reject_low 11 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25463 25462 C 607 0.00 1350 reject_low 5 ALIGNMENT 367 Y12-15f13.q1k chr08 344 1174 541781 542604 F 831 82.19 1350 reject_low 2 ALIGNMENT 96 Y12-15f13.q1k chr09 288 34 25630 25878 C 255 82.35 1350 reject_low 13 ALIGNMENT 134 Y12-15f13.q1k chr09 273 34 25561 25800 C 240 86.67 1350 reject_low 10 ALIGNMENT 40 Y12-15f13.q1k chr09 288 121 25756 25917 C 168 77.98 1350 reject_low 16 ALIGNMENT 59 Y12-15f13.q1k chr09 288 41 25672 25913 C 248 77.02 1350 reject_low 15 ALIGNMENT 148 Y12-15f13.q1k chr09 288 34 25336 25590 C 255 87.45 1350 reject_low 6 ALIGNMENT 0 Y12-15f13.q1k chr09 895 274 25562 25561 C 622 0.00 1350 reject_low 10 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25631 25630 C 607 0.00 1350 reject_low 13 ALIGNMENT 37 Y12-15f13.q1k chr09 273 87 25729 25909 C 187 76.47 1350 reject_low 18 ALIGNMENT 40 Y12-15f13.q1k chr09 147 34 25309 25422 C 114 79.82 1350 reject_low 17 ALIGNMENT 0 Y12-15f13.q1k chr09 120 62 25918 25917 C 59 0.00 1350 reject_low 16 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25757 25756 C 607 0.00 1350 reject_low 16 ALIGNMENT 0 Y12-15f13.q1k chr08 62 343 541781 541780 F 282 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-15f13.p1k chr10 169 626 21229 21228 F 458 0.00 1211 reject_low 4 ALIGNMENT 0 Y12-15f13.q1k chr01 62 343 221170 221169 F 282 0.00 1350 reject_low 3 ALIGNMENT 145 Y12-15f13.q1k chr09 288 34 25588 25842 C 255 87.06 1350 reject_low 7 ALIGNMENT 0 Y12-15f13.q1k chr09 895 274 25436 25435 C 622 0.00 1350 reject_low 8 ALIGNMENT 0 Y12-15f13.q1k chr09 895 148 25310 25309 C 748 0.00 1350 reject_low 17 ALIGNMENT 0 Y12-15f13.q1k chr09 895 190 25310 25309 C 706 0.00 1350 reject_low 14 ALIGNMENT 0 Y12-15f13.q1k chr09 895 274 25394 25393 C 622 0.00 1350 reject_low 12 ALIGNMENT 0 Y12-15f13.q1k chr15 227 62 30776 30775 C 166 0.00 1350 reject_low 1 ALIGNMENT 125 Y12-15f13.q1k chr09 273 34 25393 25632 C 240 85.42 1350 reject_low 12 ALIGNMENT 74 Y12-15f13.q1k chr09 189 34 25309 25464 C 156 83.97 1350 reject_low 14 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25505 25504 C 607 0.00 1350 reject_low 9 ALIGNMENT 143 Y12-15f13.q1k chr09 273 34 25435 25674 C 240 87.92 1350 reject_low 8 ALIGNMENT 166 Y12-15f13.q1k chr09 288 34 25462 25716 C 255 89.80 1350 reject_low 5 ALIGNMENT 0 Y12-15f13.q1k chr09 895 274 25730 25729 C 622 0.00 1350 reject_low 18 ALIGNMENT 364 Y12-15f13.q1k chr01 344 1174 221170 221993 F 831 82.07 1350 reject_low 3 ALIGNMENT 128 Y12-15f13.q1k chr09 246 34 25294 25506 C 213 88.26 1350 reject_low 11 ALIGNMENT 0 Y12-15f13.q1k chr09 86 62 25910 25909 C 25 0.00 1350 reject_low 18 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25337 25336 C 607 0.00 1350 reject_low 6 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25673 25672 C 607 0.00 1350 reject_low 15 ALIGNMENT 628 Y12-15f13.p1k chr09 2 808 21084 21886 F 807 94.30 1211 accept 0 ALIGNMENT 0 Y12-15f13.q1k chr09 895 289 25589 25588 C 607 0.00 1350 reject_low 7 ALIGNMENT 960 Y12-15f14.q1k chr12 1141 32 298778 299877 C 1110 96.67 1387 accept 0 ALIGNMENT 949 Y12-15f14.p1k chr12 14 1123 295746 296845 F 1110 97.03 1259 accept 0 ALIGNMENT 912 Y12-15f15.p1k chr14 17 1106 150368 151442 F 1090 96.51 1262 accept 0 ALIGNMENT 1001 Y12-15f15.q1k chr14 1293 37 153042 154302 C 1257 94.59 1331 accept 0 ALIGNMENT 946 Y12-15f16.q1k chr04 35 1139 952680 953778 F 1105 96.74 1353 accept 0 ALIGNMENT 883 Y12-15f16.p1k chr04 1028 2 956559 957577 C 1027 96.69 1249 accept 0 ALIGNMENT 770 Y12-15f17.p1k chr03 1 885 38693 39578 F 885 96.95 1244 accept 0 ALIGNMENT 883 Y12-15f17.q1k chr03 1067 38 41679 42727 C 1030 96.99 1282 accept 0 ALIGNMENT 996 Y12-15f18.p1k chr16 16 1189 379745 380929 F 1174 96.00 1221 accept 0 ALIGNMENT 1012 Y12-15f18.q1k chr16 1203 36 382679 383863 C 1168 96.32 1293 accept 0 ALIGNMENT 976 Y12-15f20.p1k chr15 20 1160 781330 782463 F 1141 96.23 1236 accept 0 ALIGNMENT 912 Y12-15f20.q1k chr15 1088 33 785629 786677 C 1056 96.69 1304 accept 0 ALIGNMENT 569 Y12-15f21.p1k chr14 862 47 514950 515750 C 816 92.28 1329 accept 0 ALIGNMENT 663 Y12-15f21.q1k chr14 33 743 511776 512485 F 711 98.45 1292 accept 0 ALIGNMENT 952 Y12-15f22.q1k chr16 38 1096 502318 503364 F 1059 97.45 1285 accept 0 ALIGNMENT 1042 Y12-15f22.p1k chr16 1196 24 505966 507147 C 1173 96.93 1197 accept 0 ALIGNMENT 1045 Y12-15f23.p1k chr06 21 1163 53113 54255 F 1143 97.20 1175 accept 0 ALIGNMENT 1031 Y12-15f23.q1k chr06 1177 33 56410 57548 C 1145 97.47 1204 accept 0 ALIGNMENT 1026 Y12-15f24.q1k chr11 1207 42 395021 396186 C 1166 96.91 1207 accept 0 ALIGNMENT 926 Y12-15f24.p1k chr11 18 1113 390827 391917 F 1096 96.35 1177 accept 0 ALIGNMENT 972 Y12-15g01.q1k chr16 35 1171 640544 641696 F 1137 95.95 1290 accept_chi 1 ALIGNMENT 1039 Y12-15g01.p1k chr04 1245 19 1435100 1436325 C 1227 95.76 1245 accept_chi 0 ALIGNMENT 976 Y12-15g02.q1k chr01 1115 40 152602 153679 C 1076 97.86 1351 accept 0 ALIGNMENT 807 Y12-15g02.p1k chr01 5 946 149340 150268 F 942 97.03 1310 accept 0 ALIGNMENT 878 Y12-15g05.q1k chr15 1108 34 769969 771050 C 1075 94.88 1358 accept 0 ALIGNMENT 798 Y12-15g05.p1k chr15 1 910 765485 766397 F 910 97.03 1153 accept 0 ALIGNMENT 750 Y12-15g07.q1k chr15 892 33 891563 892419 C 860 96.74 1422 accept_chi 0 ALIGNMENT 726 Y12-15g07.p1k chr12 934 42 454720 455602 C 893 95.18 1397 accept_chi 1 ALIGNMENT 726 Y12-15g07.p1k chr12 934 42 463857 464739 C 893 95.18 1397 accept_chi 2 ALIGNMENT 928 Y12-15g08.p1k chr12 1045 22 947148 948174 C 1024 97.75 1274 accept_trans 0 ALIGNMENT 1013 Y12-15g08.q1k chr12 36 1231 936864 938072 F 1196 96.49 1346 accept_trans 0 ALIGNMENT 653 Y12-15g09.p1k chr16 837 6 314763 315591 C 832 94.23 1188 accept 0 ALIGNMENT 876 Y12-15g09.q1k chr16 36 1049 311597 312604 F 1014 96.84 1421 accept 0 ALIGNMENT 925 Y12-15g10.q1k chr12 34 1146 460824 461927 F 1113 95.42 1397 accept 1 ALIGNMENT 750 Y12-15g10.p1k chr12 962 2 455393 456330 C 961 94.59 1227 accept 0 ALIGNMENT 752 Y12-15g10.q1k chr12 133 922 489754 490543 F 790 98.61 1397 reject_low 2 ALIGNMENT 0 Y12-15g10.q1k chr12 62 132 489754 489753 F 71 0.00 1397 reject_low 2 ALIGNMENT 925 Y12-15g10.q1k chr12 34 1146 451687 452790 F 1113 95.42 1397 accept 0 ALIGNMENT 750 Y12-15g10.p1k chr12 962 2 464530 465467 C 961 94.59 1227 accept 1 ALIGNMENT 31 Y12-15g11.p1k chr06 293 408 28253 28368 F 116 75.86 1477 reject_low 1 ALIGNMENT 658 Y12-15g11.p1k chr02 30 886 800273 801123 F 857 93.70 1477 accept 0 ALIGNMENT 0 Y12-15g11.p1k chr06 137 292 28253 28252 F 156 0.00 1477 reject_low 1 ALIGNMENT 0 Y12-15g11.p1k chr06 409 428 28368 28367 F 20 0.00 1477 reject_low 1 ALIGNMENT 0 Y12-15g12.q1k chr12 62 404 451419 451418 F 343 0.00 1402 reject_low 1 ALIGNMENT 31 Y12-15g12.q1k chr12 38 69 460161 460192 F 32 100.00 1402 reject_bad_break 0 ALIGNMENT 210 Y12-15g12.q1k chr12 775 1117 489754 490103 F 343 88.63 1402 reject_low 2 ALIGNMENT 809 Y12-15g12.q1k chr12 70 1117 460209 461272 F 1048 93.99 1402 reject_bad_break 0 ALIGNMENT 544 Y12-15g12.q1k chr12 405 1117 451419 452135 F 713 93.69 1402 reject_low 1 ALIGNMENT 0 Y12-15g12.q1k chr12 62 774 489754 489753 F 713 0.00 1402 reject_low 2 ALIGNMENT 0 Y12-15g12.q1k chr12 70 69 460193 460208 F 0 0.00 1402 reject_bad_break 0 ALIGNMENT 760 Y12-15g13.p1k chr09 969 5 181820 182762 C 965 95.96 1190 accept 0 ALIGNMENT 1015 Y12-15g13.q1k chr09 37 1312 178503 179793 F 1276 93.89 1370 accept 0 ALIGNMENT 844 Y12-15g14.q1k chr07 950 31 174650 175567 C 920 98.48 1442 accept 0 ALIGNMENT 581 Y12-15g14.p1k chr07 40 760 170861 171581 F 721 95.98 1390 accept 0 ALIGNMENT 39 Y12-15g16.p1k chrm 173 236 9484 9549 F 64 87.50 1123 reject_low 2 ALIGNMENT 225 Y12-15g16.p1k chr12 799 281 589255 589777 C 519 83.24 1123 accept 0 ALIGNMENT 0 Y12-15g16.p1k chrm 263 221 48103 48102 C 43 0.00 1123 reject_low 6 ALIGNMENT 28 Y12-15g16.p1k chrm 220 179 48102 48143 C 42 90.48 1123 reject_low 6 ALIGNMENT 37 Y12-15g16.p1k chrm 221 172 84487 84536 C 50 92.00 1123 reject_low 4 ALIGNMENT 0 Y12-15g16.p1k chr12 280 62 589778 589777 C 219 0.00 1123 accept 0 ALIGNMENT 0 Y12-15g16.p1k chrm 171 62 84537 84536 C 110 0.00 1123 reject_low 4 ALIGNMENT 0 Y12-15g16.p1k chrm 168 62 52824 52823 C 107 0.00 1123 reject_low 3 ALIGNMENT 0 Y12-15g16.p1k chrm 62 167 73 72 F 106 0.00 1123 reject_low 5 ALIGNMENT 0 Y12-15g16.p1k chrm 178 62 48144 48143 C 117 0.00 1123 reject_low 6 ALIGNMENT 0 Y12-15g16.p1k chrm 263 222 84488 84487 C 42 0.00 1123 reject_low 4 ALIGNMENT 0 Y12-15g16.p1k chrm 237 263 9549 9548 F 27 0.00 1123 reject_low 2 ALIGNMENT 165 Y12-15g16.p1k chrm 5 276 4372 4634 F 272 95.59 1123 reject_low 1 ALIGNMENT 0 Y12-15g16.p1k chrm 263 221 52773 52772 C 43 0.00 1123 reject_low 3 ALIGNMENT 0 Y12-15g16.p1k chrm 216 263 121 120 F 48 0.00 1123 reject_low 5 ALIGNMENT 32 Y12-15g16.p1k chrm 168 215 73 121 F 48 89.58 1123 reject_low 5 ALIGNMENT 37 Y12-15g16.p1k chrm 220 169 52772 52823 C 52 90.38 1123 reject_low 3 ALIGNMENT 0 Y12-15g16.p1k chrm 62 172 9484 9483 F 111 0.00 1123 reject_low 2 ALIGNMENT 887 Y12-15g17.p1k chr07 1044 4 264123 265149 C 1041 97.12 1266 accept 0 ALIGNMENT 1001 Y12-15g17.q1k chr07 29 1247 260677 261908 F 1219 95.57 1314 accept 0 ALIGNMENT 916 Y12-15g18.q1k chr12 33 1089 186250 187308 F 1057 96.69 1328 accept 0 ALIGNMENT 847 Y12-15g18.p1k chr12 1044 1 190013 191060 C 1044 95.40 1154 accept 0 ALIGNMENT 830 Y12-15g19.p1k chr13 7 930 684981 685898 F 924 97.94 1225 accept 0 ALIGNMENT 928 Y12-15g19.q1k chr13 1155 33 688709 689821 C 1123 95.99 1286 accept 0 ALIGNMENT 84 Y12-15g20.q1k chr16 108 212 622526 622628 F 105 94.29 1337 reject_low 1 ALIGNMENT 0 Y12-15g20.q1k chr16 213 735 622628 622627 F 523 0.00 1337 reject_low 1 ALIGNMENT 408 Y12-15g20.q1k chr04 49 518 1095293 1095761 F 470 96.81 1337|0,3 accept_trans 0 ALIGNMENT 88 Y12-15g20.q1k chr16 110 213 560184 560287 F 104 95.19 1337 reject_low 2 ALIGNMENT 0 Y12-15g20.q1k chr16 62 109 560184 560183 F 48 0.00 1337 reject_low 2 ALIGNMENT 0 Y12-15g20.q1k chr06 62 118 157908 157907 F 57 0.00 1337 reject_low 6 ALIGNMENT 86 Y12-15g20.q1k chr08 116 213 237845 237942 F 98 95.92 1337 reject_low 5 ALIGNMENT 0 Y12-15g20.q1k chr02 735 218 36391 36390 C 518 0.00 1337 reject_low 4 ALIGNMENT 75 Y12-15g20.q1k chr13 213 109 352278 352381 C 105 91.43 1337 reject_low 7 ALIGNMENT 0 Y12-15g20.q1k chr14 735 214 374871 374870 C 522 0.00 1337 reject_low 8 ALIGNMENT 817 Y12-15g20.p1k chr04 1062 4 1105761 1106802 C 1059 94.71 1183 accept_trans 0 ALIGNMENT 259 Y12-15g20.q1k chr04 513 863 1101687 1102034 F 351 94.59 1337|3,0 accept_trans 0 ALIGNMENT 0 Y12-15g20.q1k chr06 214 735 158002 158001 F 522 0.00 1337 reject_low 6 ALIGNMENT 83 Y12-15g20.q1k chr06 119 213 157908 158002 F 95 95.79 1337 reject_low 6 ALIGNMENT 84 Y12-15g20.q1k chr08 112 213 358472 358573 F 102 94.12 1337 reject_low 3 ALIGNMENT 0 Y12-15g20.q1k chr02 118 62 36488 36487 C 57 0.00 1337 reject_low 4 ALIGNMENT 0 Y12-15g20.q1k chr07 62 119 440720 440719 F 58 0.00 1337 reject_low 9 ALIGNMENT 0 Y12-15g20.q1k chr08 214 735 237942 237941 F 522 0.00 1337 reject_low 5 ALIGNMENT 80 Y12-15g20.q1k chr14 213 117 374870 374965 C 97 94.85 1337 reject_low 8 ALIGNMENT 0 Y12-15g20.q1k chr13 735 214 352279 352278 C 522 0.00 1337 reject_low 7 ALIGNMENT 0 Y12-15g20.q1k chr04 516 515 1095759 1101689 F 0 0.00 1337 accept_trans 0 ALIGNMENT 0 Y12-15g20.q1k chr08 214 735 358573 358572 F 522 0.00 1337 reject_low 3 ALIGNMENT 0 Y12-15g20.q1k chr16 214 735 560287 560286 F 522 0.00 1337 reject_low 2 ALIGNMENT 0 Y12-15g20.q1k chr07 213 735 440812 440811 F 523 0.00 1337 reject_low 9 ALIGNMENT 0 Y12-15g20.q1k chr08 62 115 237845 237844 F 54 0.00 1337 reject_low 5 ALIGNMENT 0 Y12-15g20.q1k chr04 49 48 1095276 1095292 F 0 0.00 1337 accept_trans 0 ALIGNMENT 76 Y12-15g20.q1k chr02 217 119 36390 36487 C 99 92.93 1337 reject_low 4 ALIGNMENT 21 Y12-15g20.q1k chr04 28 48 1095255 1095275 F 21 100.00 1337 accept_trans 0 ALIGNMENT 0 Y12-15g20.q1k chr08 62 111 358472 358471 F 50 0.00 1337 reject_low 3 ALIGNMENT 0 Y12-15g20.q1k chr16 62 107 622526 622525 F 46 0.00 1337 reject_low 1 ALIGNMENT 81 Y12-15g20.q1k chr07 120 212 440720 440812 F 93 95.70 1337 reject_low 9 ALIGNMENT 0 Y12-15g20.q1k chr13 108 62 352382 352381 C 47 0.00 1337 reject_low 7 ALIGNMENT 0 Y12-15g20.q1k chr14 116 62 374966 374965 C 55 0.00 1337 reject_low 8 ALIGNMENT 1025 Y12-15g22.p1k chr09 1213 13 202592 203790 C 1201 96.84 1217 accept 0 ALIGNMENT 948 Y12-15g22.q1k chr09 29 1172 198635 199765 F 1144 95.72 1232 accept 0 ALIGNMENT 119 Y12-15g23.q1k chr12 621 739 482044 482162 F 119 100.00 1203 reject_low 6 ALIGNMENT 941 Y12-15g23.p1k chr12 1115 11 453539 454621 C 1105 96.56 1255 reject_low 1 ALIGNMENT 128 Y12-15g23.q1k chr12 621 754 489348 489481 F 134 98.51 1203 reject_low 3 ALIGNMENT 0 Y12-15g23.q1k chr12 740 844 482162 482161 F 105 0.00 1203 reject_low 6 ALIGNMENT 119 Y12-15g23.q1k chr12 621 739 485696 485814 F 119 100.00 1203 reject_low 7 ALIGNMENT 0 Y12-15g23.q1k chr12 740 844 472582 472581 F 105 0.00 1203 reject_low 5 ALIGNMENT 0 Y12-15g23.q1k chr12 62 620 472464 472463 F 559 0.00 1203 reject_low 5 ALIGNMENT 676 Y12-15g23.q1k chr12 37 739 468228 468930 F 703 99.86 1203 reject_low 2 ALIGNMENT 0 Y12-15g23.q1k chr06 253 62 31730 31729 C 192 0.00 1203 reject_low 4 ALIGNMENT 0 Y12-15g23.q1k chr12 755 844 489481 489480 F 90 0.00 1203 reject_low 3 ALIGNMENT 119 Y12-15g23.q1k chr12 621 739 472464 472582 F 119 100.00 1203 reject_low 5 ALIGNMENT 0 Y12-15g23.q1k chr12 740 844 485814 485813 F 105 0.00 1203 reject_low 7 ALIGNMENT 0 Y12-15g23.q1k chr12 62 620 485696 485695 F 559 0.00 1203 reject_low 7 ALIGNMENT 0 Y12-15g23.q1k chr12 62 620 482044 482043 F 559 0.00 1203 reject_low 6 ALIGNMENT 0 Y12-15g23.q1k chr12 740 844 468930 468929 F 105 0.00 1203 reject_low 2 ALIGNMENT 911 Y12-15g23.q1k chr12 37 1122 459091 460195 F 1086 96.22 1203 accept 0 ALIGNMENT 0 Y12-15g23.q1k chr12 62 620 489348 489347 F 559 0.00 1203 reject_low 3 ALIGNMENT 0 Y12-15g23.q1k chr06 844 362 31623 31622 C 483 0.00 1203 reject_low 4 ALIGNMENT 94 Y12-15g23.q1k chr06 361 254 31622 31729 C 108 98.15 1203 reject_low 4 ALIGNMENT 941 Y12-15g23.p1k chr12 1115 11 462676 463758 C 1105 96.56 1255 accept 0 ALIGNMENT 0 Y12-15g24.p1k chr12 247 818 482162 482161 F 572 0.00 1227 reject_low 5 ALIGNMENT 119 Y12-15g24.p1k chr12 128 246 485696 485814 F 119 100.00 1227 reject_low 6 ALIGNMENT 0 Y12-15g24.p1k chr12 247 818 485814 485813 F 572 0.00 1227 reject_low 6 ALIGNMENT 119 Y12-15g24.p1k chr12 128 246 472464 472582 F 119 100.00 1227 reject_low 4 ALIGNMENT 226 Y12-15g24.p1k chr12 16 246 468699 468930 F 231 99.57 1227 reject_low 2 ALIGNMENT 128 Y12-15g24.p1k chr12 128 261 489348 489481 F 134 98.51 1227 reject_low 3 ALIGNMENT 0 Y12-15g24.p1k chr12 62 127 489348 489347 F 66 0.00 1227 reject_low 3 ALIGNMENT 119 Y12-15g24.p1k chr12 128 246 482044 482162 F 119 100.00 1227 reject_low 5 ALIGNMENT 0 Y12-15g24.p1k chr12 62 127 485696 485695 F 66 0.00 1227 reject_low 6 ALIGNMENT 0 Y12-15g24.p1k chr12 62 127 482044 482043 F 66 0.00 1227 reject_low 5 ALIGNMENT 0 Y12-15g24.p1k chr12 247 818 468930 468929 F 572 0.00 1227 reject_low 2 ALIGNMENT 996 Y12-15g24.q1k chr12 1200 39 454657 455803 C 1162 96.56 1225 reject_low 1 ALIGNMENT 803 Y12-15g24.p1k chr12 16 1112 459562 460689 F 1097 92.98 1227 accept 0 ALIGNMENT 0 Y12-15g24.p1k chr12 262 818 489481 489480 F 557 0.00 1227 reject_low 3 ALIGNMENT 0 Y12-15g24.p1k chr12 62 127 472464 472463 F 66 0.00 1227 reject_low 4 ALIGNMENT 0 Y12-15g24.p1k chr12 247 818 472582 472581 F 572 0.00 1227 reject_low 4 ALIGNMENT 996 Y12-15g24.q1k chr12 1200 39 463794 464940 C 1162 96.56 1225 accept 0 ALIGNMENT 977 Y12-15h03.q1k chr04 37 1173 898401 899539 F 1137 96.66 1366 accept 0 ALIGNMENT 776 Y12-15h03.p1k chr04 945 13 902283 903204 C 933 96.78 1408 accept 0 ALIGNMENT 764 Y12-15h05.p1k chr04 3 949 938168 939098 F 947 95.56 1267 accept 0 ALIGNMENT 960 Y12-15h05.q1k chr04 1190 34 941069 942236 C 1157 95.42 1358 accept 0 ALIGNMENT 999 Y12-15h07.p1k chr14 1253 19 748593 749838 C 1235 94.57 1279 accept_chi 0 ALIGNMENT 939 Y12-15h07.q1k chr04 36 1131 1480426 1481529 F 1096 96.26 1346 accept_chi 1 ALIGNMENT 824 Y12-15h08.q1k chr04 1022 34 599555 600534 C 989 95.75 1398 accept 0 ALIGNMENT 527 Y12-15h08.p1k chr04 1 620 596337 596955 F 620 96.45 1346 accept 0 ALIGNMENT 489 Y12-15h09.p1k chr16 676 36 459947 460571 C 641 95.01 1450 accept 0 ALIGNMENT 971 Y12-15h09.q1k chr16 32 1249 456175 457390 F 1218 95.07 1418 accept 0 ALIGNMENT 489 Y12-15h10.q1k chr06 752 39 78859 79569 C 714 90.76 1439 accept 0 ALIGNMENT 844 Y12-15h11.q1k chr08 35 1049 545365 546376 F 1015 95.67 1365 reject_low 12 ALIGNMENT 718 Y12-15h11.q1k chr15 1049 35 120855 121866 C 1015 91.53 1365 reject_low 22 ALIGNMENT 285 Y12-15h11.p1k chr14 908 579 96613 96941 C 330 97.58 1318 reject_low 32 ALIGNMENT 0 Y12-15h11.p1k chr13 62 578 184170 184169 F 517 0.00 1318 reject_low 9 ALIGNMENT 0 Y12-15h11.p1k chr01 577 62 166165 166164 C 516 0.00 1318 reject_low 27 ALIGNMENT 0 Y12-15h11.p1k chr08 578 62 543942 543941 C 517 0.00 1318 reject_low 37 ALIGNMENT 718 Y12-15h11.q1k chr10 1049 35 475530 476541 C 1015 91.53 1365 reject_low 19 ALIGNMENT 0 Y12-15h11.p1k chr13 578 62 357336 357335 C 517 0.00 1318 reject_low 30 ALIGNMENT 500 Y12-15h11.p1k chr05 2 578 487001 487586 F 577 97.05 1318 accept 0 ALIGNMENT 730 Y12-15h11.q1k chr15 1049 35 597968 598979 C 1015 91.92 1365 reject_low 8 ALIGNMENT 718 Y12-15h11.q1k chr13 1049 35 199484 200495 C 1015 91.53 1365 reject_low 21 ALIGNMENT 0 Y12-15h11.p1k chr02 62 578 226624 226623 F 517 0.00 1318 reject_low 29 ALIGNMENT 0 Y12-15h11.p1k chr13 578 62 362918 362917 C 517 0.00 1318 reject_low 1 ALIGNMENT 844 Y12-15h11.q1k chr12 35 1049 216842 217853 F 1015 95.67 1365 reject_low 13 ALIGNMENT 270 Y12-15h11.p1k chr13 579 891 184170 184481 F 313 97.76 1318 reject_low 9 ALIGNMENT 733 Y12-15h11.q1k chr16 35 1049 852386 853397 F 1015 92.02 1365 reject_low 14 ALIGNMENT 724 Y12-15h11.q1k chr10 1049 35 481114 482125 C 1015 91.72 1365 reject_low 15 ALIGNMENT 0 Y12-15h11.p1k chr07 62 578 535215 535214 F 517 0.00 1318 reject_low 7 ALIGNMENT 709 Y12-15h11.q1k chr16 35 1049 806398 807409 F 1015 91.23 1365 reject_low 25 ALIGNMENT 0 Y12-15h11.p1k chr15 62 578 594821 594820 F 517 0.00 1318 reject_low 8 ALIGNMENT 270 Y12-15h11.p1k chr08 891 579 543630 543941 C 313 97.76 1318 reject_low 37 ALIGNMENT 0 Y12-15h11.p1k chr07 62 578 931691 931690 F 517 0.00 1318 reject_low 31 ALIGNMENT 0 Y12-15h11.p1k chr07 62 775 817278 817277 F 714 0.00 1318 reject_low 40 ALIGNMENT 847 Y12-15h11.q1k chr05 35 1049 494252 495263 F 1015 95.76 1365 reject_low 11 ALIGNMENT 273 Y12-15h11.p1k chr15 579 891 594821 595132 F 313 98.08 1318 reject_low 8 ALIGNMENT 277 Y12-15h11.p1k chr11 908 579 457786 458114 C 330 96.67 1318 reject_low 33 ALIGNMENT 273 Y12-15h11.p1k chr07 891 579 817418 817729 C 313 98.08 1318 reject_low 34 ALIGNMENT 0 Y12-15h11.p1k chr07 578 62 823312 823311 C 517 0.00 1318 reject_low 6 ALIGNMENT 293 Y12-15h11.p1k chr07 579 907 535215 535542 F 329 98.48 1318 reject_low 7 ALIGNMENT 718 Y12-15h11.q1k chr12 1049 35 596296 597307 C 1015 91.53 1365 reject_low 20 ALIGNMENT 0 Y12-15h11.p1k chr15 62 578 600403 600402 F 517 0.00 1318 reject_low 35 ALIGNMENT 0 Y12-15h11.p1k chr07 578 62 817730 817729 C 517 0.00 1318 reject_low 34 ALIGNMENT 294 Y12-15h11.p1k chr02 579 908 226624 226952 F 330 98.48 1318 reject_low 29 ALIGNMENT 0 Y12-15h11.p1k chr14 578 62 96942 96941 C 517 0.00 1318 reject_low 32 ALIGNMENT 871 Y12-15h11.q1k chr13 35 1049 358759 359770 F 1015 96.55 1365 reject_low 1 ALIGNMENT 703 Y12-15h11.q1k chr13 1049 35 187317 188328 C 1015 91.03 1365 reject_low 9 ALIGNMENT 886 Y12-15h11.q1k chr02 1049 35 224189 225200 C 1015 97.04 1365 reject_low 2 ALIGNMENT 77 Y12-15h11.p1k chr15 697 827 594630 594759 F 131 89.31 1318 reject_low 39 ALIGNMENT 721 Y12-15h11.q1k chr16 1049 35 59604 60615 C 1015 91.63 1365 reject_low 16 ALIGNMENT 846 Y12-15h11.q1k chr07 35 1026 819153 820140 F 992 96.37 1365 reject_low 6 ALIGNMENT 272 Y12-15h11.p1k chr07 578 1009 535763 536194 F 432 90.28 1318 reject_low 4 ALIGNMENT 0 Y12-15h11.p1k chr07 62 577 535763 535762 F 516 0.00 1318 reject_low 4 ALIGNMENT 847 Y12-15h11.q1k chr02 1049 35 262723 263737 C 1015 95.86 1365 reject_low 5 ALIGNMENT 0 Y12-15h11.p1k chr14 576 62 102526 102525 C 515 0.00 1318 reject_low 3 ALIGNMENT 296 Y12-15h11.p1k chr11 908 578 517098 517427 C 331 98.49 1318 reject_low 28 ALIGNMENT 300 Y12-15h11.p1k chr14 938 577 102166 102525 C 362 96.13 1318 reject_low 3 ALIGNMENT 270 Y12-15h11.p1k chr02 579 891 259576 259887 F 313 97.76 1318 reject_low 5 ALIGNMENT 0 Y12-15h11.p1k chr11 578 62 458115 458114 C 517 0.00 1318 reject_low 33 ALIGNMENT 850 Y12-15h11.q1k chr14 1049 35 522295 523306 C 1015 95.86 1365 reject_low 10 ALIGNMENT 718 Y12-15h11.q1k chr04 35 1049 880055 881066 F 1015 91.53 1365 reject_low 17 ALIGNMENT 270 Y12-15h11.p1k chr02 579 891 265161 265472 F 313 97.76 1318 reject_low 36 ALIGNMENT 0 Y12-15h11.p1k chr14 609 714 102578 102577 F 106 0.00 1318 reject_low 41 ALIGNMENT 720 Y12-15h11.q1k chr13 35 1026 374457 375444 F 992 92.14 1365 reject_low 24 ALIGNMENT 213 Y12-15h11.p1k chr01 1009 578 165734 166164 C 432 85.88 1318 reject_low 27 ALIGNMENT 198 Y12-15h11.p1k chr01 908 579 160242 160575 C 330 89.09 1318 reject_low 38 ALIGNMENT 0 Y12-15h11.p1k chr02 62 578 259576 259575 F 517 0.00 1318 reject_low 5 ALIGNMENT 273 Y12-15h11.p1k chr07 891 579 823000 823311 C 313 98.08 1318 reject_low 6 ALIGNMENT 45 Y12-15h11.p1k chr07 776 888 817278 817387 F 113 83.19 1318 reject_low 40 ALIGNMENT 0 Y12-15h11.p1k chr02 62 578 265161 265160 F 517 0.00 1318 reject_low 36 ALIGNMENT 0 Y12-15h11.p1k chr14 62 578 102549 102548 F 517 0.00 1318 reject_low 41 ALIGNMENT 294 Y12-15h11.p1k chr13 908 579 357007 357335 C 330 98.48 1318 reject_low 30 ALIGNMENT 0 Y12-15h11.p1k chr02 62 578 221040 221039 F 517 0.00 1318 reject_low 2 ALIGNMENT 724 Y12-15h11.q1k chr07 1049 35 538917 539928 C 1015 91.72 1365 reject_low 4,7 ALIGNMENT 0 Y12-15h11.p1k chr01 578 62 160576 160575 C 517 0.00 1318 reject_low 38 ALIGNMENT 718 Y12-15h11.q1k chr05 35 1049 445153 446164 F 1015 91.53 1365 reject_low 18 ALIGNMENT 0 Y12-15h11.p1k chr15 62 696 594630 594629 F 635 0.00 1318 reject_low 39 ALIGNMENT 720 Y12-15h11.q1k chr12 1026 35 654001 654988 C 992 92.14 1365 reject_low 23 ALIGNMENT 273 Y12-15h11.p1k chr15 579 891 600403 600714 F 313 98.08 1318 reject_low 35 ALIGNMENT 29 Y12-15h11.p1k chr14 579 608 102549 102578 F 30 100.00 1318 reject_low 41 ALIGNMENT 841 Y12-15h11.q1k chr14 35 1049 98365 99376 F 1015 95.57 1365 reject_low 3 ALIGNMENT 703 Y12-15h11.q1k chr16 1049 35 847564 848575 C 1015 91.03 1365 reject_low 26 ALIGNMENT 0 Y12-15h11.p1k chr11 577 62 517428 517427 C 516 0.00 1318 reject_low 28 ALIGNMENT 0 Y12-15h11.p1k chr05 579 714 487586 487585 F 136 0.00 1318 accept 0 ALIGNMENT 309 Y12-15h11.p1k chr02 579 1014 221040 221471 F 436 92.89 1318 reject_low 2 ALIGNMENT 279 Y12-15h11.p1k chr07 579 913 931691 932024 F 335 96.42 1318 reject_low 31 ALIGNMENT 320 Y12-15h11.p1k chr13 1014 579 362488 362917 C 436 93.58 1318 reject_low 1 ALIGNMENT 780 Y12-15h12.p1k chr16 1187 15 847423 848594 C 1173 90.20 1282 ambiguous_trans 24 ALIGNMENT 798 Y12-15h12.p1k chr07 1187 30 538776 539929 C 1158 90.93 1282 ambiguous_trans 15 ALIGNMENT 807 Y12-15h12.p1k chr16 15 1187 852367 853538 F 1173 91.13 1282 ambiguous_trans 11 ALIGNMENT 923 Y12-15h12.p1k chr14 1056 15 522280 523325 C 1042 97.41 1282 ambiguous_trans 9 ALIGNMENT 807 Y12-15h12.p1k chr15 1187 15 597827 598998 C 1173 90.96 1282 ambiguous_trans 10 ALIGNMENT 794 Y12-15h12.p1k chr05 30 1187 445152 446305 F 1158 90.85 1282 ambiguous_trans 18 ALIGNMENT 794 Y12-15h12.p1k chr12 1120 30 653898 654989 C 1091 92.03 1282 ambiguous_trans 23 ALIGNMENT 977 Y12-15h12.p1k chr02 1187 15 224048 225219 C 1173 95.82 1282 ambiguous_trans 1 ALIGNMENT 800 Y12-15h12.p1k chr10 1187 30 480973 482126 C 1158 91.02 1282 ambiguous_trans 12 ALIGNMENT 951 Y12-15h12.p1k chr13 15 1187 358740 359911 F 1173 95.14 1282 ambiguous_trans 2 ALIGNMENT 796 Y12-15h12.p1k chr13 15 1178 374438 375601 F 1164 90.81 1282 ambiguous_trans 14 ALIGNMENT 782 Y12-15h12.p1k chr13 1187 15 187176 188347 C 1173 90.28 1282 ambiguous_trans 22 ALIGNMENT 795 Y12-15h12.p1k chr04 1187 30 1209702 1210855 C 1158 90.85 1282 ambiguous_trans 17 ALIGNMENT 923 Y12-15h12.p1k chr07 15 1120 819134 820243 F 1106 95.66 1282 ambiguous_trans 7 ALIGNMENT 925 Y12-15h12.p1k chr05 15 1187 494233 495404 F 1173 94.37 1282 ambiguous_trans 4 ALIGNMENT 794 Y12-15h12.p1k chr15 1187 30 120714 121867 C 1158 90.85 1282 ambiguous_trans 20 ALIGNMENT 922 Y12-15h12.p1k chr08 15 1187 545346 546517 F 1173 94.29 1282 ambiguous_trans 5 ALIGNMENT 783 Y12-15h12.p1k chr16 15 1187 806379 807550 F 1173 90.45 1282 ambiguous_trans 21 ALIGNMENT 918 Y12-15h12.p1k chr14 15 1187 98346 99517 F 1173 94.12 1282 ambiguous_trans 6 ALIGNMENT 795 Y12-15h12.p1k chr04 15 1187 988457 989628 F 1173 90.79 1282 ambiguous_trans 13 ALIGNMENT 863 Y12-15h12.q1k chr10 36 1032 529195 530200 F 997 96.99 1283 accept 0 ALIGNMENT 797 Y12-15h12.p1k chr10 1187 30 475389 476542 C 1158 90.93 1282 ambiguous_trans 16 ALIGNMENT 938 Y12-15h12.p1k chr02 1187 15 262582 263756 C 1173 94.80 1282 ambiguous_trans 3 ALIGNMENT 794 Y12-15h12.p1k chr13 1187 30 199343 200496 C 1158 90.85 1282 ambiguous_trans 19 ALIGNMENT 920 Y12-15h12.p1k chr12 30 1187 216841 217994 F 1158 94.47 1282 ambiguous_trans_ua 8 ALIGNMENT 933 Y12-15h13.q1k chr16 1082 35 98244 99296 C 1048 97.23 1299 accept 0 ALIGNMENT 970 Y12-15h13.p1k chr16 16 1168 94709 95843 F 1153 96.53 1279 accept 0 ALIGNMENT 0 Y12-15h13.q1k chr13 62 707 632352 632351 F 646 0.00 1299 reject_low 1 ALIGNMENT 243 Y12-15h13.q1k chr13 708 1082 632352 632735 F 375 89.07 1299 reject_low 1 ALIGNMENT 752 Y12-15h14.p1k chr04 3 872 271986 272850 F 870 97.36 1314 accept 0 ALIGNMENT 942 Y12-15h14.q1k chr04 1149 35 276645 277757 C 1115 96.14 1389 accept 0 ALIGNMENT 749 Y12-15h15.p1k chr14 4 904 165136 166036 F 901 95.56 1275 accept 0 ALIGNMENT 886 Y12-15h15.q1k chr14 1033 33 169519 170518 C 1001 97.30 1332 accept 0 ALIGNMENT 0 Y12-15h16.q1k chr10 624 625 294383 294363 C 0 0.00 1315 reject_bad_break 0 ALIGNMENT 406 Y12-15h16.q1k chr10 1181 625 293807 294382 C 557 92.28 1315 reject_bad_break 0 ALIGNMENT 921 Y12-15h16.p1k chr10 18 1097 290686 291760 F 1080 96.20 1266 reject_bad_break 0 ALIGNMENT 468 Y12-15h16.q1k chr10 557 35 294398 294917 C 523 97.13 1315 reject_bad_break 0 ALIGNMENT 30 Y12-15h16.q1k chr10 624 589 294364 294399 C 36 97.22 1315 reject_bad_break 0 ALIGNMENT 0 Y12-15h16.q1k chr10 588 558 294400 294397 C 31 0.00 1315 reject_bad_break 0 ALIGNMENT 0 Y12-15h17.p1k vc_3 448 62 2107 2106 C 387 0.00 1413 reject_low 5 ALIGNMENT 0 Y12-15h17.p1k vc_1 62 414 2496 2495 F 353 0.00 1413 reject_low 1 ALIGNMENT 0 Y12-15h17.p1k vc_4 62 448 5870 5869 F 387 0.00 1413 reject_low 6 ALIGNMENT 23 Y12-15h17.p1k vc_1 604 449 1958 2106 C 156 75.00 1413 reject_low 4 ALIGNMENT 0 Y12-15h17.p1k vc_4 414 62 5848 5847 C 353 0.00 1413 reject_low 3 ALIGNMENT 353 Y12-15h17.q1k chr14 34 415 94933 95314 F 382 100.00 416 accept 0 ALIGNMENT 23 Y12-15h17.p1k vc_4 449 604 5870 6018 F 156 75.00 1413 reject_low 6 ALIGNMENT 34 Y12-15h17.p1k vc_4 448 415 5814 5847 C 34 100.00 1413 reject_low 3 ALIGNMENT 23 Y12-15h17.p1k vc_3 604 449 1958 2106 C 156 75.00 1413 reject_low 5 ALIGNMENT 307 Y12-15h17.p1k chr14 413 41 94934 95307 C 373 96.78 1413 accept 0 ALIGNMENT 0 Y12-15h17.p1k vc_3 62 414 2496 2495 F 353 0.00 1413 reject_low 2 ALIGNMENT 34 Y12-15h17.p1k vc_3 415 448 2496 2529 F 34 100.00 1413 reject_low 2 ALIGNMENT 34 Y12-15h17.p1k vc_1 415 448 2496 2529 F 34 100.00 1413 reject_low 1 ALIGNMENT 0 Y12-15h17.p1k vc_1 448 62 2107 2106 C 387 0.00 1413 reject_low 4 ALIGNMENT 881 Y12-15h18.q1k chr15 964 33 533775 534704 C 932 98.82 1339 accept 0 ALIGNMENT 0 Y12-15h18.q1k chr15 201 62 237022 237021 C 140 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-15h18.q1k chr15 809 259 236966 236965 C 551 0.00 1339 reject_low 1 ALIGNMENT 797 Y12-15h18.p1k chr15 9 929 530266 531181 F 921 96.96 1287 accept 0 ALIGNMENT 22 Y12-15h18.q1k chr15 258 202 236965 237021 C 57 84.21 1339 reject_low 1 ALIGNMENT 1040 Y12-15h19.q1k chr10 1252 36 231157 232379 C 1217 95.65 1282 accept 0 ALIGNMENT 987 Y12-15h19.p1k chr10 19 1249 228030 229255 F 1231 95.69 1257 accept 0 ALIGNMENT 551 Y12-15h20.p1k chr13 733 5 487178 487896 C 729 93.83 1191 accept 0 ALIGNMENT 914 Y12-15h20.q1k chr13 32 1071 483406 484446 F 1040 97.12 1299 accept 0 ALIGNMENT 173 Y12-15h20.p1k chr11 17 485 198869 199334 F 469 80.60 1191 reject_low 1 ALIGNMENT 997 Y12-15h21.p1k chr15 20 1215 534954 536133 F 1196 96.40 1227 accept 0 ALIGNMENT 1036 Y12-15h21.q1k chr15 1212 34 538657 539839 C 1179 97.29 1219 accept 0 ALIGNMENT 986 Y12-15h22.p1k chr13 24 1190 886152 887324 F 1167 95.89 1207 accept 0 ALIGNMENT 1023 Y12-15h22.q1k chr13 1186 38 890857 892007 C 1149 97.13 1230 accept 0 ALIGNMENT 0 Y12-15h23.p1k chr04 819 128 757400 757399 C 692 0.00 1217 reject_low 13 ALIGNMENT 526 Y12-15h23.p1k chr04 989 25 758178 759079 C 965 87.77 1217 reject_low 8 ALIGNMENT 539 Y12-15h23.p1k chr04 989 26 757560 758502 C 964 87.55 1217 reject_low 5 ALIGNMENT 33 Y12-15h23.p1k chr04 1166 1000 757415 757570 C 167 77.84 1217 reject_low 4,5,6,7,8,11,12,14,21 ALIGNMENT 421 Y12-15h23.p1k chr04 989 380 759138 759726 C 610 91.48 1217 reject_low 14 ALIGNMENT 537 Y12-15h23.p1k chr04 989 26 758562 759462 C 964 88.17 1217 reject_low 6 ALIGNMENT 0 Y12-15h23.p1k chr04 715 62 759775 759774 C 654 0.00 1217 reject_low 19 ALIGNMENT 0 Y12-15h23.p1k chr04 999 991 758765 759712 C 9 0.00 1217 reject_low 18 ALIGNMENT 0 Y12-15h23.p1k chr04 166 160 759727 759712 C 7 0.00 1217 reject_low 11 ALIGNMENT 0 Y12-15h23.p1k chr04 999 373 759725 759712 C 627 0.00 1217 reject_low 20 ALIGNMENT 167 Y12-15h23.p1k chr04 340 26 757399 757692 C 315 87.30 1217 reject_low 10 ALIGNMENT 37 Y12-15h23.p1k chr04 1108 1000 759621 759724 C 109 81.65 1217 reject_low 19,20 ALIGNMENT 38 Y12-15h23.p1k chr04 372 311 759713 759774 C 62 88.71 1217 reject_low 20 ALIGNMENT 514 Y12-15h23.p1k chr04 958 25 757399 758311 C 934 87.37 1217 reject_low 3 ALIGNMENT 510 Y12-15h23.p1k chr04 989 167 758946 759726 C 823 89.67 1217 reject_low 11 ALIGNMENT 334 Y12-15h23.p1k chr04 553 20 757399 757912 C 534 89.33 1217 reject_low 9 ALIGNMENT 0 Y12-15h23.p1k chr04 310 62 759775 759774 C 249 0.00 1217 reject_low 20 ALIGNMENT 650 Y12-15h23.p1k chr04 1140 26 757630 758694 C 1115 88.61 1217 accept 0 ALIGNMENT 0 Y12-15h23.p1k chr04 928 62 759775 759774 C 867 0.00 1217 reject_low 18 ALIGNMENT 39 Y12-15h23.p1k chr04 159 98 759713 759774 C 62 88.71 1217 reject_low 11,14,21 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 759329 C 10 0.00 1217 reject_low 12 ALIGNMENT 28 Y12-15h23.p1k chr04 1108 1000 758469 758572 C 109 78.90 1217 reject_low 15 ALIGNMENT 0 Y12-15h23.p1k chr04 379 160 759727 759712 C 220 0.00 1217 reject_low 14 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 758369 C 10 0.00 1217 reject_low 7 ALIGNMENT 0 Y12-15h23.p1k chr04 97 62 759775 759774 C 36 0.00 1217 reject_low 11,14,21 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 757559 C 10 0.00 1217 reject_low 5 ALIGNMENT 86 Y12-15h23.p1k chr04 127 26 757399 757500 C 102 95.10 1217 reject_low 13 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 758561 C 10 0.00 1217 reject_low 6 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 758177 C 10 0.00 1217 reject_low 8 ALIGNMENT 549 Y12-15h23.p1k chr04 989 26 758754 759654 C 964 88.59 1217 reject_low 4 ALIGNMENT 28 Y12-15h23.p1k chr04 1108 1000 759429 759532 C 109 78.90 1217 reject_low 16 ALIGNMENT 0 Y12-15h23.p1k chr04 819 554 757400 757399 C 266 0.00 1217 reject_low 9 ALIGNMENT 33 Y12-15h23.p1k chr04 1166 1000 758609 758764 C 167 77.84 1217 reject_low 18 ALIGNMENT 0 Y12-15h23.p1k chr04 784 160 759727 759712 C 625 0.00 1217 reject_low 21 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 759137 C 10 0.00 1217 reject_low 14 ALIGNMENT 0 Y12-15h23.p1k chr04 819 746 757400 757399 C 74 0.00 1217 reject_low 2 ALIGNMENT 572 Y12-15h23.p1k chr04 745 26 757399 758118 C 720 93.61 1217 reject_low 2 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 758753 C 10 0.00 1217 reject_low 4 ALIGNMENT 160 Y12-15h23.p1k chr04 989 785 759522 759726 C 205 93.17 1217 reject_low 21 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 758945 C 10 0.00 1217 reject_low 11 ALIGNMENT 293 Y12-15h23.p1k chr04 989 524 759330 759774 C 466 89.91 1217 reject_low 12 ALIGNMENT 529 Y12-15h23.p1k chr04 989 25 758370 759271 C 965 87.88 1217 reject_low 7 ALIGNMENT 0 Y12-15h23.p1k chr04 999 62 759533 759532 C 938 0.00 1217 reject_low 16 ALIGNMENT 39 Y12-15h23.p1k chr04 777 716 759713 759774 C 62 88.71 1217 reject_low 19 ALIGNMENT 28 Y12-15h23.p1k chr04 1079 1000 758112 758188 C 80 81.25 1217 reject_low 17 ALIGNMENT 32 Y12-15h23.p1k chr04 990 929 759713 759774 C 62 85.48 1217 reject_low 18 ALIGNMENT 0 Y12-15h23.p1k chr04 999 778 759725 759712 C 222 0.00 1217 reject_low 19 ALIGNMENT 0 Y12-15h23.p1k chr04 999 62 758573 758572 C 938 0.00 1217 reject_low 15 ALIGNMENT 574 Y12-15h23.p1k chr04 1168 25 757818 758887 C 1144 86.71 1217 reject_low 1 ALIGNMENT 844 Y12-15h23.q1k chr04 36 992 752391 753339 F 957 98.22 1287 accept 0 ALIGNMENT 0 Y12-15h23.p1k chr04 999 62 758189 758188 C 938 0.00 1217 reject_low 17 ALIGNMENT 0 Y12-15h23.p1k chr04 523 62 759775 759774 C 462 0.00 1217 reject_low 12 ALIGNMENT 0 Y12-15h23.p1k chr04 819 341 757400 757399 C 479 0.00 1217 reject_low 10 ALIGNMENT 0 Y12-15h23.p1k chr04 999 990 757571 759521 C 10 0.00 1217 reject_low 21 ALIGNMENT 0 Y12-15i02.q1k chr10 62 672 59098 59097 F 611 0.00 1340 reject_low 7 ALIGNMENT 0 Y12-15i02.q1k chr03 673 62 295554 295553 C 612 0.00 1340 reject_low 9 ALIGNMENT 0 Y12-15i02.p1k chr05 158 62 551354 551353 C 97 0.00 1348 reject_low 21 ALIGNMENT 0 Y12-15i02.p1k chr09 242 720 210744 210743 F 479 0.00 1348 reject_low 17 ALIGNMENT 0 Y12-15i02.p1k chr04 157 62 668077 668076 C 96 0.00 1348 reject_low 12 ALIGNMENT 76 Y12-15i02.p1k chr05 240 159 551272 551353 C 82 97.56 1348 reject_low 21 ALIGNMENT 0 Y12-15i02.p1k chr02 62 158 197497 197496 F 97 0.00 1348 reject_low 19 ALIGNMENT 0 Y12-15i02.p1k chr12 62 157 734803 734802 F 96 0.00 1348 reject_low 18 ALIGNMENT 0 Y12-15i02.p1k chr07 62 158 739127 739126 F 97 0.00 1348 reject_low 22 ALIGNMENT 78 Y12-15i02.p1k chr02 159 239 197497 197577 F 81 98.77 1348 reject_low 19 ALIGNMENT 0 Y12-15i02.q1k chr15 665 62 113883 113882 C 604 0.00 1340 reject_low 6 ALIGNMENT 0 Y12-15i02.p1k chr09 720 241 183429 183428 C 480 0.00 1348 reject_low 20 ALIGNMENT 0 Y12-15i02.q1k chr04 62 667 434254 434253 F 606 0.00 1340 reject_low 5 ALIGNMENT 83 Y12-15i02.p1k chr12 243 157 1052057 1052143 C 87 98.85 1348 reject_low 13 ALIGNMENT 0 Y12-15i02.q1k chr15 748 783 354112 354111 F 36 0.00 1340 reject_low 11 ALIGNMENT 0 Y12-15i02.q1k chr04 748 783 434333 434332 F 36 0.00 1340 reject_low 5 ALIGNMENT 0 Y12-15i02.q1k chr08 62 673 116101 116100 F 612 0.00 1340 reject_low 10 ALIGNMENT 76 Y12-15i02.q1k chr14 747 665 104805 104887 C 83 97.59 1340 reject_low 4 ALIGNMENT 0 Y12-15i02.p1k chr04 720 245 667991 667990 C 476 0.00 1348 reject_low 12 ALIGNMENT 0 Y12-15i02.p1k chr16 62 155 819522 819521 F 94 0.00 1348 reject_low 14 ALIGNMENT 0 Y12-15i02.p1k chr16 720 240 880285 880284 C 481 0.00 1348 reject_low 15 ALIGNMENT 76 Y12-15i02.p1k chr09 240 158 183428 183511 C 83 97.59 1348 reject_low 20 ALIGNMENT 78 Y12-15i02.p1k chr05 242 158 443188 443272 C 85 97.65 1348 reject_low 16 ALIGNMENT 80 Y12-15i02.p1k chr04 244 158 667990 668076 C 87 97.70 1348 reject_low 12 ALIGNMENT 0 Y12-15i02.p1k chr12 156 62 1052144 1052143 C 95 0.00 1348 reject_low 13 ALIGNMENT 0 Y12-15i02.p1k chr12 242 720 734886 734885 F 479 0.00 1348 reject_low 18 ALIGNMENT 0 Y12-15i02.q1k chr09 783 761 325733 325732 C 23 0.00 1340 reject_low 2 ALIGNMENT 77 Y12-15i02.p1k chr12 158 241 734803 734886 F 84 97.62 1348 reject_low 18 ALIGNMENT 74 Y12-15i02.q1k chr15 674 747 354039 354112 F 74 100.00 1340 reject_low 11 ALIGNMENT 0 Y12-15i02.p1k chr07 235 720 739202 739201 F 486 0.00 1348 reject_low 22 ALIGNMENT 0 Y12-15i02.p1k chr12 720 244 1052058 1052057 C 477 0.00 1348 reject_low 13 ALIGNMENT 0 Y12-15i02.q1k chr10 748 783 59172 59171 F 36 0.00 1340 reject_low 7 ALIGNMENT 0 Y12-15i02.q1k chr14 783 748 104806 104805 C 36 0.00 1340 reject_low 4 ALIGNMENT 80 Y12-15i02.p1k chr16 156 241 819522 819607 F 86 97.67 1348 reject_low 14 ALIGNMENT 0 Y12-15i02.q1k chr08 748 783 116174 116173 F 36 0.00 1340 reject_low 10 ALIGNMENT 0 Y12-15i02.p1k chr05 720 241 551273 551272 C 480 0.00 1348 reject_low 21 ALIGNMENT 0 Y12-15i02.q1k chr09 662 62 325829 325828 C 601 0.00 1340 reject_low 2 ALIGNMENT 75 Y12-15i02.q1k chr10 673 747 59098 59172 F 75 100.00 1340 reject_low 7 ALIGNMENT 0 Y12-15i02.p1k chr14 243 720 602396 602395 F 478 0.00 1348 reject_low 1 ALIGNMENT 0 Y12-15i02.q1k chr15 62 673 354039 354038 F 612 0.00 1340 reject_low 11 ALIGNMENT 0 Y12-15i02.p1k chr05 720 243 443189 443188 C 478 0.00 1348 reject_low 16 ALIGNMENT 0 Y12-15i02.q1k chr15 783 748 113802 113801 C 36 0.00 1340 reject_low 6 ALIGNMENT 733 Y12-15i02.p1k chr14 834 5 569279 570095 C 830 97.59 1348 accept_trans 0 ALIGNMENT 74 Y12-15i02.q1k chr08 674 747 116101 116174 F 74 100.00 1340 reject_low 10 ALIGNMENT 0 Y12-15i02.q1k chr02 673 62 266452 266451 C 612 0.00 1340 reject_low 8 ALIGNMENT 0 Y12-15i02.p1k chr02 240 720 197577 197576 F 481 0.00 1348 reject_low 19 ALIGNMENT 77 Y12-15i02.p1k chr09 158 241 210661 210744 F 84 97.62 1348 reject_low 17 ALIGNMENT 0 Y12-15i02.q1k chr09 783 752 175025 175024 C 32 0.00 1340 reject_low 3 ALIGNMENT 0 Y12-15i02.p1k chr16 242 720 819607 819606 F 479 0.00 1348 reject_low 14 ALIGNMENT 74 Y12-15i02.q1k chr03 747 674 295480 295553 C 74 100.00 1340 reject_low 9 ALIGNMENT 0 Y12-15i02.p1k chr09 62 157 210661 210660 F 96 0.00 1348 reject_low 17 ALIGNMENT 75 Y12-15i02.q1k chr09 751 666 175024 175108 C 86 96.51 1340 reject_low 3 ALIGNMENT 79 Y12-15i02.q1k chr09 760 663 325732 325828 C 98 94.90 1340 reject_low 2 ALIGNMENT 0 Y12-15i02.q1k chr14 664 62 104888 104887 C 603 0.00 1340 reject_low 4 ALIGNMENT 80 Y12-15i02.p1k chr16 239 156 880284 880368 C 84 98.81 1348 reject_low 15 ALIGNMENT 0 Y12-15i02.p1k chr05 157 62 443273 443272 C 96 0.00 1348 reject_low 16 ALIGNMENT 76 Y12-15i02.p1k chr07 159 234 739127 739202 F 76 100.00 1348 reject_low 22 ALIGNMENT 77 Y12-15i02.q1k chr04 668 747 434254 434333 F 80 98.75 1340 reject_low 5 ALIGNMENT 74 Y12-15i02.q1k chr02 747 674 266378 266451 C 74 100.00 1340 reject_low 8 ALIGNMENT 0 Y12-15i02.q1k chr02 783 748 266379 266378 C 36 0.00 1340 reject_low 8 ALIGNMENT 75 Y12-15i02.q1k chr15 747 666 113801 113882 C 82 97.56 1340 reject_low 6 ALIGNMENT 0 Y12-15i02.p1k chr09 157 62 183512 183511 C 96 0.00 1348 reject_low 20 ALIGNMENT 879 Y12-15i02.q1k chr14 39 1129 560055 561148 F 1091 95.23 1340 accept_trans 0 ALIGNMENT 0 Y12-15i02.q1k chr09 665 62 175109 175108 C 604 0.00 1340 reject_low 3 ALIGNMENT 0 Y12-15i02.p1k chr16 155 62 880369 880368 C 94 0.00 1348 reject_low 15 ALIGNMENT 213 Y12-15i02.p1k chr14 1 242 602154 602396 F 242 96.69 1348 reject_low 1 ALIGNMENT 0 Y12-15i02.q1k chr03 783 748 295481 295480 C 36 0.00 1340 reject_low 9 ALIGNMENT 932 Y12-15i03.p1k chr07 17 1098 645583 646674 F 1082 96.12 1242 accept 0 ALIGNMENT 0 Y12-15i03.q1k chr16 750 62 731750 731749 C 689 0.00 1326 reject_low 1 ALIGNMENT 284 Y12-15i03.q1k chr16 1173 751 731312 731749 C 423 89.60 1326 reject_low 1 ALIGNMENT 909 Y12-15i03.q1k chr07 1173 34 648477 649623 C 1140 95.00 1326 accept 0 ALIGNMENT 711 Y12-15i05.p1k chr02 12 765 792522 793273 F 754 98.81 1294 accept 0 ALIGNMENT 253 Y12-15i05.p1k chr02 715 1171 793115 793563 F 457 86.65 1294 reject_low 1 ALIGNMENT 36 Y12-15i05.p1k chr02 607 657 793223 793273 F 51 90.20 1294 reject_low 2 ALIGNMENT 0 Y12-15i05.p1k chr02 658 769 793273 793272 F 112 0.00 1294 reject_low 2 ALIGNMENT 962 Y12-15i05.q1k chr02 1250 39 795696 796916 C 1212 94.55 1433 accept 0 ALIGNMENT 0 Y12-15i05.p1k chr02 62 714 793115 793114 F 653 0.00 1294 reject_low 1 ALIGNMENT 0 Y12-15i05.p1k chr02 62 606 793223 793222 F 545 0.00 1294 reject_low 2 ALIGNMENT 837 Y12-15i06.p1k chr10 6 983 601359 602322 F 978 97.44 1339 accept_chi 1 ALIGNMENT 958 Y12-15i06.q1k chr16 36 1139 394662 395774 F 1104 97.01 1393 accept_chi 0 ALIGNMENT 948 Y12-15i07.q1k chr14 1162 45 435861 436990 C 1118 96.42 1337 accept 0 ALIGNMENT 932 Y12-15i07.p1k chr14 15 1230 433483 434709 F 1216 93.67 1252 accept 0 ALIGNMENT 736 Y12-15i08.q1k chr16 33 841 867724 868533 F 809 98.64 1354 accept 0 ALIGNMENT 440 Y12-15i08.p1k chr16 761 147 871943 872553 C 615 91.87 1411 accept 0 ALIGNMENT 903 Y12-15i09.q1k chr04 32 1088 497954 499021 F 1057 96.40 1351 accept 0 ALIGNMENT 846 Y12-15i09.p1k chr04 1052 1 501162 502205 C 1052 94.77 1195 accept 0 ALIGNMENT 867 Y12-15i11.q1k chr14 1115 40 434098 435172 C 1076 94.80 1363 accept 0 ALIGNMENT 978 Y12-15i11.p1k chr14 12 1147 431217 432349 F 1136 96.39 1307 accept 0 ALIGNMENT 830 Y12-15i13.p1k chr14 1024 5 345775 346773 C 1020 95.49 1276 accept 0 ALIGNMENT 983 Y12-15i13.q1k chr14 34 1214 342518 343708 F 1181 95.68 1321 accept 0 ALIGNMENT 928 Y12-15i15.q1k chr04 32 1213 679748 680936 F 1182 93.91 1312 accept 0 ALIGNMENT 1027 Y12-15i15.p1k chr04 1214 18 682704 683910 C 1197 96.49 1269 accept 0 ALIGNMENT 901 Y12-15i16.q1k chr04 1095 36 960766 961836 C 1060 96.32 1277 accept 0 ALIGNMENT 861 Y12-15i16.p1k chr04 10 1148 956660 957782 F 1139 93.68 1315 accept 0 ALIGNMENT 0 Y12-15i17.q1k chr13 62 147 362586 362585 F 86 0.00 1297 reject_low 9 ALIGNMENT 32 Y12-15i17.p1k chr10 689 603 520164 520250 C 87 79.31 1238 reject_low 33 ALIGNMENT 0 Y12-15i17.p1k chr10 793 690 520165 520164 C 104 0.00 1238 reject_low 33 ALIGNMENT 92 Y12-15i17.q1k chr06 426 171 158408 158661 C 256 81.25 1297 reject_low 26 ALIGNMENT 0 Y12-15i17.q1k chr07 147 62 536102 536101 C 86 0.00 1297 reject_low 19 ALIGNMENT 0 Y12-15i17.p1k chr10 602 548 520251 520293 C 55 0.00 1238 reject_low 33 ALIGNMENT 37 Y12-15i17.p1k chr10 102 33 520748 520817 C 70 84.29 1238 reject_low 33 ALIGNMENT 0 Y12-15i17.q1k chr06 945 477 137659 137658 C 469 0.00 1297 reject_low 32 ALIGNMENT 21 Y12-15i17.q1k chr06 577 511 158486 158557 C 67 83.58 1297 reject_low 25 ALIGNMENT 167 Y12-15i17.q1k chr01 148 480 165827 166164 F 333 85.59 1297 reject_low 23 ALIGNMENT 0 Y12-15i17.p1k chr10 486 103 520355 520747 C 384 0.00 1238 reject_low 33 ALIGNMENT 208 Y12-15i17.q1k chr04 479 171 1101350 1101664 C 309 91.59 1297 reject_low 21 ALIGNMENT 0 Y12-15i17.q1k chr08 62 170 549329 549328 F 109 0.00 1297 reject_low 18 ALIGNMENT 0 Y12-15i17.q1k chr01 945 482 183135 183134 C 464 0.00 1297 reject_low 8 ALIGNMENT 77 Y12-15i17.q1k chr06 479 158 143535 143856 C 322 77.95 1297 reject_low 29 ALIGNMENT 0 Y12-15i17.q1k chr02 945 480 265162 265161 C 466 0.00 1297 reject_low 20 ALIGNMENT 0 Y12-15i17.q1k chr08 480 945 549637 549636 F 466 0.00 1297 reject_low 18 ALIGNMENT 0 Y12-15i17.q1k chr01 749 945 139256 139255 F 197 0.00 1297 reject_low 1 ALIGNMENT 134 Y12-15i17.q1k chr06 476 214 137658 137907 C 263 87.83 1297|0,3 reject_low 32 ALIGNMENT 258 Y12-15i17.q1k chr16 485 143 560472 560814 C 343 93.88 1297 reject_low 5 ALIGNMENT 0 Y12-15i17.q1k chr06 945 480 143536 143535 C 466 0.00 1297 reject_low 29 ALIGNMENT 0 Y12-15i17.p1k chr14 62 170 252840 252839 F 109 0.00 1238 reject_low 2 ALIGNMENT 0 Y12-15i17.q1k chr01 147 62 189752 189751 C 86 0.00 1297 reject_low 28 ALIGNMENT 152 Y12-15i17.p1k chr14 171 544 252840 253213 F 374 80.48 1238 reject_low 2 ALIGNMENT 0 Y12-15i17.q1k chr08 62 170 543633 543632 F 109 0.00 1297 reject_low 13 ALIGNMENT 0 Y12-15i17.q1k chr16 142 62 560815 560814 C 81 0.00 1297 reject_low 5 ALIGNMENT 0 Y12-15i17.p1k chr04 542 793 45216 45215 F 252 0.00 1238 reject_low 4 ALIGNMENT 0 Y12-15i17.p1k chr14 545 793 253213 253212 F 249 0.00 1238 reject_low 2 ALIGNMENT 174 Y12-15i17.q1k chr13 755 148 196061 196668 C 608 79.11 1297 reject_low 3 ALIGNMENT 231 Y12-15i17.q1k chr02 479 171 265161 265469 C 309 93.85 1297 reject_low 20 ALIGNMENT 22 Y12-15i17.p1k chr10 603 631 382575 382603 F 29 93.10 1238 reject_low 31 ALIGNMENT 0 Y12-15i17.q1k chr07 480 945 823311 823310 F 466 0.00 1297 reject_low 17 ALIGNMENT 0 Y12-15i17.q1k chr06 945 484 137905 137904 C 462 0.00 1297 reject_low 27 ALIGNMENT 0 Y12-15i17.q1k chr04 945 480 1101351 1101350 C 466 0.00 1297 reject_low 21 ALIGNMENT 0 Y12-15i17.p1k chr10 532 602 382510 382574 F 71 0.00 1238 reject_low 31 ALIGNMENT 0 Y12-15i17.q1k chr15 147 62 123628 123627 C 86 0.00 1297 reject_low 15 ALIGNMENT 0 Y12-15i17.q1k chr13 945 756 196062 196061 C 190 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-15i17.q1k chr08 480 945 543941 543940 F 466 0.00 1297 reject_low 13 ALIGNMENT 0 Y12-15i17.q1k chr04 170 62 1101665 1101664 C 109 0.00 1297 reject_low 21 ALIGNMENT 226 Y12-15i17.q1k chr15 479 148 123290 123627 C 332 91.57 1297 reject_low 15 ALIGNMENT 0 Y12-15i17.p1k chr10 632 793 382603 382602 F 162 0.00 1238 reject_low 31 ALIGNMENT 0 Y12-15i17.q1k chr02 147 62 221374 221373 C 86 0.00 1297 reject_low 11 ALIGNMENT 0 Y12-15i17.q1k chr01 62 147 160239 160238 F 86 0.00 1297 reject_low 24 ALIGNMENT 245 Y12-15i17.q1k chr13 148 479 362586 362917 F 332 93.37 1297 reject_low 9 ALIGNMENT 0 Y12-15i17.q1k chr02 170 62 265470 265469 C 109 0.00 1297 reject_low 20 ALIGNMENT 1061 Y12-15i17.q1k chr12 37 1217 91938 93127 F 1181 98.05 1297 accept 0 ALIGNMENT 241 Y12-15i17.q1k chr13 493 171 184156 184478 C 323 93.81 1297 reject_low 6 ALIGNMENT 0 Y12-15i17.p1k chr04 62 234 44910 44909 F 173 0.00 1238 reject_low 4 ALIGNMENT 0 Y12-15i17.q1k chr01 62 147 165827 165826 F 86 0.00 1297 reject_low 23 ALIGNMENT 0 Y12-15i17.q1k chr06 157 62 143857 143856 C 96 0.00 1297 reject_low 29 ALIGNMENT 101 Y12-15i17.q1k chr01 639 748 139147 139256 F 110 97.27 1297 reject_low 1 ALIGNMENT 226 Y12-15i17.q1k chr01 481 142 183134 183474 C 340 90.88 1297 reject_low 8 ALIGNMENT 0 Y12-15i17.q1k chr06 170 62 158662 158661 C 109 0.00 1297 reject_low 26 ALIGNMENT 0 Y12-15i17.p1k chr10 62 392 382371 382370 F 331 0.00 1238 reject_low 31 ALIGNMENT 0 Y12-15i17.q1k chr06 945 578 158487 158486 C 368 0.00 1297 reject_low 25 ALIGNMENT 0 Y12-15i17.q1k chr07 62 170 817421 817420 F 109 0.00 1297 reject_low 16 ALIGNMENT 0 Y12-15i17.q1k chr16 170 62 850314 850313 C 109 0.00 1297 reject_low 22 ALIGNMENT 233 Y12-15i17.q1k chr07 171 479 823003 823311 F 309 94.17 1297 reject_low 17 ALIGNMENT 873 Y12-15i17.p1k chr01 1104 10 139746 140832 C 1095 94.25 1238 reject_low 1 ALIGNMENT 0 Y12-15i17.q1k chr14 480 945 96941 96940 F 466 0.00 1297 reject_low 7 ALIGNMENT 0 Y12-15i17.q1k chr07 945 271 817291 817290 C 675 0.00 1297 reject_low 30 ALIGNMENT 78 Y12-15i17.q1k chr06 483 158 137904 138229 C 326 77.91 1297 reject_low 27 ALIGNMENT 0 Y12-15i17.q1k chr16 945 486 560473 560472 C 460 0.00 1297 reject_low 5 ALIGNMENT 237 Y12-15i17.q1k chr13 479 171 189752 190060 C 309 94.50 1297 reject_low 12 ALIGNMENT 0 Y12-15i17.q1k chr08 945 472 133681 133680 C 474 0.00 1297 reject_low 14 ALIGNMENT 0 Y12-15i17.q1k chr16 945 480 850000 849999 C 466 0.00 1297 reject_low 22 ALIGNMENT 0 Y12-15i17.q1k chr13 480 945 362917 362916 F 466 0.00 1297 reject_low 9 ALIGNMENT 227 Y12-15i17.q1k chr08 471 148 133680 134002 C 324 91.98 1297 reject_low 14 ALIGNMENT 0 Y12-15i17.q1k chr13 945 494 184157 184156 C 452 0.00 1297 reject_low 6 ALIGNMENT 208 Y12-15i17.q1k chr16 479 171 849999 850313 C 309 91.59 1297 reject_low 22 ALIGNMENT 42 Y12-15i17.p1k chr05 40 102 95341 95403 F 63 88.89 1238 reject_low 10 ALIGNMENT 0 Y12-15i17.q1k chr06 147 62 143938 143937 C 86 0.00 1297 reject_low 32 ALIGNMENT 0 Y12-15i17.q1k chr01 480 945 160575 160574 F 466 0.00 1297 reject_low 24 ALIGNMENT 255 Y12-15i17.q1k chr14 147 479 96609 96941 F 333 94.29 1297 reject_low 7 ALIGNMENT 0 Y12-15i17.q1k chr15 945 480 123291 123290 C 466 0.00 1297 reject_low 15 ALIGNMENT 0 Y12-15i17.q1k chr13 170 62 184479 184478 C 109 0.00 1297 reject_low 6 ALIGNMENT 0 Y12-15i17.q1k chr06 510 62 158558 158557 C 449 0.00 1297 reject_low 25 ALIGNMENT 46 Y12-15i17.p1k chr10 393 531 382371 382509 F 139 78.42 1238 reject_low 31 ALIGNMENT 112 Y12-15i17.p1k chr04 235 541 44910 45216 F 307 79.15 1238 reject_low 4 ALIGNMENT 0 Y12-15i17.q1k chr01 62 638 139147 139146 F 577 0.00 1297 reject_low 1 ALIGNMENT 0 Y12-15i17.q1k chr06 945 427 158409 158408 C 519 0.00 1297 reject_low 26 ALIGNMENT 904 Y12-15i17.p1k chr12 1133 10 95771 96883 C 1124 94.66 1238 accept 0 ALIGNMENT 233 Y12-15i17.q1k chr07 171 479 817421 817729 F 309 94.17 1297 reject_low 16 ALIGNMENT 0 Y12-15i17.q1k chr07 62 170 823003 823002 F 109 0.00 1297 reject_low 17 ALIGNMENT 0 Y12-15i17.q1k chr02 945 480 221041 221040 C 466 0.00 1297 reject_low 11 ALIGNMENT 56 Y12-15i17.q1k chr07 270 162 817290 817396 C 109 86.24 1297 reject_low 30 ALIGNMENT 0 Y12-15i17.q1k chr07 945 482 535763 535762 C 464 0.00 1297 reject_low 19 ALIGNMENT 222 Y12-15i17.q1k chr07 481 148 535762 536101 C 334 91.02 1297 reject_low 19 ALIGNMENT 236 Y12-15i17.q1k chr08 171 479 543633 543941 F 309 94.50 1297 reject_low 13 ALIGNMENT 233 Y12-15i17.q1k chr08 171 479 549329 549637 F 309 94.17 1297 reject_low 18 ALIGNMENT 0 Y12-15i17.q1k chr13 147 62 196669 196668 C 86 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-15i17.q1k chr06 157 62 138230 138229 C 96 0.00 1297 reject_low 27 ALIGNMENT 78 Y12-15i17.q1k chr01 480 148 189419 189751 C 333 77.78 1297 reject_low 28 ALIGNMENT 0 Y12-15i17.q1k chr07 161 62 817397 817396 C 100 0.00 1297 reject_low 30 ALIGNMENT 166 Y12-15i17.q1k chr01 148 479 160239 160575 F 332 85.54 1297 reject_low 24 ALIGNMENT 0 Y12-15i17.q1k chr08 147 62 134003 134002 C 86 0.00 1297 reject_low 14 ALIGNMENT 0 Y12-15i17.q1k chr13 170 62 190061 190060 C 109 0.00 1297 reject_low 12 ALIGNMENT 0 Y12-15i17.q1k chr01 945 481 189420 189419 C 465 0.00 1297 reject_low 28 ALIGNMENT 233 Y12-15i17.q1k chr02 479 148 221040 221373 C 332 92.17 1297 reject_low 11 ALIGNMENT 0 Y12-15i17.q1k chr06 216 217 137905 143868 C 0 0.00 1297 reject_low 32 ALIGNMENT 0 Y12-15i17.q1k chr01 141 62 183475 183474 C 80 0.00 1297 reject_low 8 ALIGNMENT 0 Y12-15i17.q1k chr07 480 945 817729 817728 F 466 0.00 1297 reject_low 16 ALIGNMENT 40 Y12-15i17.q1k chr06 218 148 143867 143937 C 71 88.73 1297|2,0 reject_low 32 ALIGNMENT 0 Y12-15i17.q1k chr14 62 146 96609 96608 F 85 0.00 1297 reject_low 7 ALIGNMENT 27 Y12-15i17.p1k chr10 547 487 520294 520354 C 61 81.97 1238 reject_low 33 ALIGNMENT 0 Y12-15i17.q1k chr01 481 945 166164 166163 F 465 0.00 1297 reject_low 23 ALIGNMENT 0 Y12-15i17.q1k chr13 945 480 189753 189752 C 466 0.00 1297 reject_low 12 ALIGNMENT 0 Y12-15i17.p1k chr05 103 793 95403 95402 F 691 0.00 1238 reject_low 10 ALIGNMENT 963 Y12-15i18.q1k chr15 33 1143 903558 904676 F 1111 96.58 1295 accept 0 ALIGNMENT 974 Y12-15i18.p1k chr15 1205 12 907322 908507 C 1194 95.48 1219 accept 0 ALIGNMENT 725 Y12-15i19.p1k chr15 1 882 415867 416734 F 882 96.49 1210 accept 0 ALIGNMENT 1025 Y12-15i19.q1k chr15 1236 37 419332 420533 C 1200 96.25 1293 accept 0 ALIGNMENT 1033 Y12-15i20.q1k chr02 28 1247 421651 422883 F 1220 96.48 1284 accept 0 ALIGNMENT 914 Y12-15i20.p1k chr02 1236 11 425814 427004 C 1226 93.88 1245 accept 0 ALIGNMENT 882 Y12-15i21.p1k chr04 3 1025 4735 5750 F 1023 96.77 1233 ambiguous_tel 1 ALIGNMENT 1031 Y12-15i21.q1k chr02 1194 34 544559 545710 C 1161 97.50 1238 accept 0 ALIGNMENT 876 Y12-15i21.p1k chr10 1025 3 739966 740981 C 1023 96.58 1233 ambiguous_tel 2 ALIGNMENT 925 Y12-15i22.q1k chr16 33 1185 595177 596322 F 1153 94.97 1258 accept 0 ALIGNMENT 940 Y12-15i22.p1k chr16 1077 5 598326 599387 C 1073 97.20 1256 accept 0 ALIGNMENT 977 Y12-15i24.q1k chr06 37 1194 186244 187389 F 1158 96.29 1236 accept 0 ALIGNMENT 917 Y12-15i24.p1k chr06 1115 13 189085 190180 C 1103 95.65 1220 accept 0 ALIGNMENT 835 Y12-15j01.q1k chr04 1012 38 1488815 1489787 C 975 96.92 1339 accept 0 ALIGNMENT 779 Y12-15j01.p1k chr04 5 882 1483964 1484837 F 878 98.06 1303 accept 0 ALIGNMENT 1067 Y12-15j03.q1k chr05 36 1253 79731 80966 F 1218 96.63 1359 accept 0 ALIGNMENT 997 Y12-15j03.p1k chr05 1195 20 84408 85598 C 1176 95.32 1259 accept 0 ALIGNMENT 112 Y12-15j04.p1k chr03 15 330 29003 29323 F 316 80.38 1415 accept 0 ALIGNMENT 970 Y12-15j04.q1k chr03 1227 29 33571 34767 C 1199 95.16 1344 accept 0 ALIGNMENT 985 Y12-15j05.q1k chr04 1167 34 165275 166424 C 1134 97.00 1390 accept_chi 0 ALIGNMENT 0 Y12-15j05.p1k chr15 75 66 669132 669123 C 10 0.00 1279 reject_bad_break 1 ALIGNMENT 48 Y12-15j05.p1k chr15 65 13 669124 669177 C 53 98.11 1279 reject_bad_break 1 ALIGNMENT 772 Y12-15j05.p1k chr15 1075 76 668136 669131 C 1000 94.10 1279 reject_bad_break 1 ALIGNMENT 381 Y12-15j07.p1k chr07 166 755 271068 271641 F 590 90.00 1446 accept 0 ALIGNMENT 22 Y12-15j07.q1k chr08 872 834 111524 111561 C 39 94.87 1389 reject_low 1 ALIGNMENT 752 Y12-15j07.q1k chr07 864 33 274705 275539 C 832 98.20 1389 accept 0 ALIGNMENT 0 Y12-15j07.q1k chr06 62 844 58006 58005 F 783 0.00 1389 reject_low 2 ALIGNMENT 0 Y12-15j07.q1k chr08 833 62 111562 111561 C 772 0.00 1389 reject_low 1 ALIGNMENT 20 Y12-15j07.q1k chr06 845 873 58006 58034 F 29 100.00 1389 reject_low 2 ALIGNMENT 0 Y12-15j08.q1k chr06 499 841 92590 92589 F 343 0.00 1447 reject_low 2 ALIGNMENT 0 Y12-15j08.q1k chr06 62 421 92364 92363 F 360 0.00 1447 accept 0 ALIGNMENT 0 Y12-15j08.q1k chr06 62 343 92376 92375 F 282 0.00 1447 reject_low 6 ALIGNMENT 0 Y12-15j08.q1k chr06 631 841 92452 92451 F 211 0.00 1447 reject_low 8 ALIGNMENT 0 Y12-15j08.q1k chr06 62 523 92436 92435 F 462 0.00 1447 reject_low 9 ALIGNMENT 37 Y12-15j08.q1k chr06 542 630 92364 92452 F 89 82.02 1447 reject_low 8 ALIGNMENT 0 Y12-15j08.q1k chr06 385 841 92596 92595 F 457 0.00 1447 reject_low 5 ALIGNMENT 83 Y12-15j08.q1k chr06 369 587 92371 92589 F 219 80.37 1447 reject_low 3 ALIGNMENT 0 Y12-15j08.q1k chr06 535 841 92596 92595 F 307 0.00 1447 reject_low 1 ALIGNMENT 0 Y12-15j08.q1k chr06 631 841 92422 92421 F 211 0.00 1447 reject_low 7 ALIGNMENT 41 Y12-15j08.q1k chr06 524 600 92436 92512 F 77 85.71 1447 reject_low 9 ALIGNMENT 24 Y12-15j08.q1k chr06 374 408 92556 92590 F 35 91.43 1447 reject_low 12 ALIGNMENT 0 Y12-15j08.q1k chr06 62 313 92466 92465 F 252 0.00 1447 reject_low 11 ALIGNMENT 0 Y12-15j08.q1k chr06 648 841 92529 92528 F 194 0.00 1447 reject_low 10 ALIGNMENT 0 Y12-15j08.q1k chr06 562 841 92593 92592 F 280 0.00 1447 reject_low 6 ALIGNMENT 36 Y12-15j08.q1k chr06 314 437 92466 92589 F 124 77.42 1447 reject_low 11 ALIGNMENT 0 Y12-15j08.q1k chr06 438 841 92589 92588 F 404 0.00 1447 reject_low 11 ALIGNMENT 0 Y12-15j08.q1k chr06 409 841 92590 92589 F 433 0.00 1447 reject_low 12 ALIGNMENT 0 Y12-15j08.q1k chr06 62 571 92364 92363 F 510 0.00 1447 reject_low 7 ALIGNMENT 0 Y12-15j08.q1k chr06 62 373 92556 92555 F 312 0.00 1447 reject_low 12 ALIGNMENT 38 Y12-15j08.q1k chr06 572 630 92364 92422 F 59 89.83 1447 reject_low 7 ALIGNMENT 0 Y12-15j08.q1k chr06 62 368 92371 92370 F 307 0.00 1447 reject_low 3 ALIGNMENT 0 Y12-15j08.q1k chr06 62 481 92364 92363 F 420 0.00 1447 reject_low 10 ALIGNMENT 0 Y12-15j08.q1k chr06 588 841 92589 92588 F 254 0.00 1447 reject_low 3 ALIGNMENT 423 Y12-15j08.q1k chr06 422 1082 92364 93019 F 661 90.32 1447 accept 0 ALIGNMENT 130 Y12-15j08.q1k chr06 314 498 92406 92590 F 185 91.35 1447 reject_low 2 ALIGNMENT 0 Y12-15j08.q1k chr06 62 301 92514 92513 F 240 0.00 1447 reject_low 5 ALIGNMENT 0 Y12-15j08.q1k chr06 62 313 92406 92405 F 252 0.00 1447 reject_low 2 ALIGNMENT 55 Y12-15j08.q1k chr06 302 384 92514 92596 F 83 90.36 1447 reject_low 5 ALIGNMENT 0 Y12-15j08.q1k chr06 421 841 92542 92541 F 421 0.00 1447 reject_low 4 ALIGNMENT 74 Y12-15j08.q1k chr06 314 420 92436 92542 F 107 90.65 1447 reject_low 4 ALIGNMENT 48 Y12-15j08.q1k chr06 344 561 92376 92593 F 218 75.23 1447 reject_low 6 ALIGNMENT 340 Y12-15j08.q1k chr06 33 534 92095 92596 F 502 90.64 1447 reject_low 1 ALIGNMENT 28 Y12-15j08.q1k chr06 482 647 92364 92529 F 166 73.49 1447 reject_low 10 ALIGNMENT 771 Y12-15j08.p1k chr06 919 1 95155 96057 C 919 95.87 1307 accept 0 ALIGNMENT 0 Y12-15j08.q1k chr06 601 841 92512 92511 F 241 0.00 1447 reject_low 9 ALIGNMENT 0 Y12-15j08.q1k chr06 62 313 92436 92435 F 252 0.00 1447 reject_low 4 ALIGNMENT 0 Y12-15j08.q1k chr06 62 541 92364 92363 F 480 0.00 1447 reject_low 8 ALIGNMENT 750 Y12-15j09.p1k chr10 896 3 489845 490734 C 894 95.75 1325 accept 0 ALIGNMENT 0 Y12-15j09.q1k chr10 504 62 486350 486349 C 443 0.00 1411 reject_low 1 ALIGNMENT 0 Y12-15j09.q1k chr10 814 537 486319 486318 C 278 0.00 1411 reject_low 1 ALIGNMENT 32 Y12-15j09.q1k chr10 536 505 486318 486349 C 32 100.00 1411 reject_low 1 ALIGNMENT 996 Y12-15j09.q1k chr10 30 1196 485843 486994 F 1167 96.74 1411 accept 0 ALIGNMENT 613 Y12-15j10.p1k chr06 852 5 246670 247497 C 848 93.16 1325 accept 0 ALIGNMENT 941 Y12-15j10.q1k chr06 34 1110 244438 245518 F 1077 96.47 1393 accept 0 ALIGNMENT 608 Y12-15j11.p1k chr14 47 876 424652 425467 F 830 92.77 1457 accept 0 ALIGNMENT 773 Y12-15j11.q1k chr14 919 34 428257 429135 C 886 97.18 1463 accept 0 ALIGNMENT 876 Y12-15j13.q1k chr04 1065 28 1082123 1083166 C 1038 95.86 1306 accept 0 ALIGNMENT 878 Y12-15j13.p1k chr04 1 1191 1077856 1079031 F 1191 93.95 1295 accept 0 ALIGNMENT 1017 Y12-15j14.q1k chr07 36 1230 693859 695067 F 1195 95.56 1314 accept 0 ALIGNMENT 830 Y12-15j15.p1k chr13 5 995 578255 579235 F 991 97.07 1319 accept 0 ALIGNMENT 971 Y12-15j15.q1k chr13 1150 35 581405 582516 C 1116 97.13 1359 accept 0 ALIGNMENT 695 Y12-15j16.p1k chr15 937 1 734673 735604 C 937 93.92 1286 accept 0 ALIGNMENT 976 Y12-15j16.q1k chr15 33 1196 731360 732517 F 1164 96.13 1359 accept 0 ALIGNMENT 612 Y12-15j17.p1k chr15 805 2 97761 98554 C 804 94.15 1176 accept 0 ALIGNMENT 792 Y12-15j17.q1k chr15 35 1027 94177 95162 F 993 95.17 1354 accept 0 ALIGNMENT 617 Y12-15j18.p1k chr04 41 826 139466 140239 F 786 94.78 1477 accept 0 ALIGNMENT 901 Y12-15j18.q1k chr04 1018 33 144140 145123 C 986 98.38 1371 accept 0 ALIGNMENT 1057 Y12-15j19.p1k chr05 1204 18 77307 78501 C 1187 96.97 1211 accept 0 ALIGNMENT 925 Y12-15j21.p1k chr13 19 1205 763633 764823 F 1187 94.78 1212 accept 0 ALIGNMENT 629 Y12-15j21.q1k chr13 889 30 765694 766548 C 860 92.79 1335 accept 0 ALIGNMENT 873 Y12-15j23.q1k chr02 1110 37 531919 532980 C 1074 95.53 1242 accept 0 ALIGNMENT 731 Y12-15j23.p1k chr02 190 1030 528171 529007 F 841 96.67 1246 accept 0 ALIGNMENT 934 Y12-15j24.p1k chr05 20 1174 253730 254896 F 1155 95.15 1174 accept 0 ALIGNMENT 790 Y12-15j24.q1k chr05 876 35 257551 258389 C 842 99.05 1254 accept 0 ALIGNMENT 0 Y12-15k01.q1k chr15 736 62 354113 354112 C 675 0.00 1296 reject_low 7 ALIGNMENT 730 Y12-15k01.q1k chr09 34 848 174325 175141 F 815 97.30 1296 accept 0 ALIGNMENT 0 Y12-15k01.q1k chr10 735 62 59174 59173 C 674 0.00 1296 reject_low 10 ALIGNMENT 74 Y12-15k01.q1k chr14 735 808 104803 104876 F 74 100.00 1296 reject_low 9 ALIGNMENT 0 Y12-15k01.q1k chr14 732 62 560771 560770 C 671 0.00 1296 reject_low 4 ALIGNMENT 77 Y12-15k01.q1k chr08 816 735 116096 116176 C 82 98.78 1296 reject_low 1 ALIGNMENT 0 Y12-15k01.q1k chr14 62 734 104803 104802 F 673 0.00 1296 reject_low 9 ALIGNMENT 0 Y12-15k01.q1k chr02 62 736 266378 266377 F 675 0.00 1296 reject_low 3 ALIGNMENT 0 Y12-15k01.q1k chr09 62 284 325297 325296 F 223 0.00 1296 reject_low 8 ALIGNMENT 74 Y12-15k01.q1k chr04 817 736 434254 434334 C 82 97.56 1296 reject_low 6 ALIGNMENT 73 Y12-15k01.q1k chr10 808 736 59101 59173 C 73 100.00 1296 reject_low 10 ALIGNMENT 77 Y12-15k01.q1k chr15 736 817 113800 113880 F 82 98.78 1296 reject_low 2 ALIGNMENT 0 Y12-15k01.q1k chr03 62 735 295479 295478 F 674 0.00 1296 reject_low 5 ALIGNMENT 783 Y12-15k01.p1k chr09 838 4 179193 180026 C 835 98.56 1253 accept 0 ALIGNMENT 0 Y12-15k01.q1k chr04 735 62 434335 434334 C 674 0.00 1296 reject_low 6 ALIGNMENT 73 Y12-15k01.q1k chr14 808 733 560695 560770 C 76 98.68 1296 reject_low 4 ALIGNMENT 0 Y12-15k01.q1k chr09 408 731 325420 325740 F 324 0.00 1296 reject_low 8 ALIGNMENT 36 Y12-15k01.q1k chr09 285 407 325297 325419 F 123 76.42 1296 reject_low 8 ALIGNMENT 76 Y12-15k01.q1k chr03 736 816 295479 295558 F 81 98.77 1296 reject_low 5 ALIGNMENT 75 Y12-15k01.q1k chr15 816 737 354034 354112 C 80 98.75 1296 reject_low 7 ALIGNMENT 76 Y12-15k01.q1k chr02 737 817 266378 266457 F 81 98.77 1296 reject_low 3 ALIGNMENT 83 Y12-15k01.q1k chr09 732 817 325741 325826 F 86 98.84 1296 reject_low 8 ALIGNMENT 0 Y12-15k01.q1k chr15 62 735 113800 113799 F 674 0.00 1296 reject_low 2 ALIGNMENT 0 Y12-15k01.q1k chr08 734 62 116177 116176 C 673 0.00 1296 reject_low 1 ALIGNMENT 519 Y12-15k02.q1k chr10 35 1076 208874 209927 F 1042 84.45 1438 accept 0 ALIGNMENT 861 Y12-15k03.q1k chr03 990 36 103664 104632 C 955 97.28 1311 accept 0 ALIGNMENT 926 Y12-15k03.p1k chr03 11 1125 100498 101607 F 1115 95.87 1258 accept 0 ALIGNMENT 938 Y12-15k04.p1k chr10 1125 16 212202 213302 C 1110 96.67 1262 accept 0 ALIGNMENT 925 Y12-15k04.q1k chr10 39 1100 208869 209947 F 1062 97.18 1348 accept 0 ALIGNMENT 965 Y12-15k05.q1k chr10 1077 35 616450 617490 C 1043 98.56 1394 accept 0 ALIGNMENT 935 Y12-15k05.p1k chr10 16 1147 612121 613243 F 1132 96.38 1314 accept 0 ALIGNMENT 914 Y12-15k06.p1k chr11 11 1063 600616 601653 F 1053 97.34 1340 accept 0 ALIGNMENT 1018 Y12-15k06.q1k chr11 1261 31 603936 605170 C 1231 95.78 1377 accept 0 ALIGNMENT 1035 Y12-15k08.q1k chr02 36 1228 664096 665302 F 1193 96.65 1348 accept 0 ALIGNMENT 940 Y12-15k08.p1k chr02 1016 11 668422 669419 C 1006 98.61 1323 accept 0 ALIGNMENT 0 Y12-15k09.p1k chr08 809 164 381994 381993 C 646 0.00 1294 reject_low 1 ALIGNMENT 1045 Y12-15k09.q1k chr14 1194 36 335109 336272 C 1159 97.33 1369 accept 0 ALIGNMENT 967 Y12-15k09.p1k chr14 11 1124 332002 333104 F 1114 97.04 1294 accept 0 ALIGNMENT 133 Y12-15k09.p1k chr08 163 11 381993 382147 C 153 96.73 1294 reject_low 1 ALIGNMENT 945 Y12-15k10.p1k chr04 1094 16 581465 582535 C 1079 97.13 1265 accept 0 ALIGNMENT 941 Y12-15k10.q1k chr04 37 1101 577084 578163 F 1065 96.81 1332 accept 0 ALIGNMENT 767 Y12-15k11.p1k chr02 926 2 226020 226931 C 925 97.08 1256 ambiguous_trans 1 ALIGNMENT 637 Y12-15k11.p1k chr16 2 795 850649 851446 F 794 95.59 1256 reject_low 13 ALIGNMENT 791 Y12-15k11.q1k chr13 1099 34 373784 374850 C 1066 93.25 1353 reject_low 8 ALIGNMENT 802 Y12-15k11.q1k chr02 34 969 263344 264277 F 936 97.01 1353 ambiguous_trans 6 ALIGNMENT 876 Y12-15k11.q1k chr04 34 1106 1210461 1211535 F 1073 95.62 1353 reject_low 21 ALIGNMENT 786 Y12-15k11.q1k chr15 34 1106 121473 122547 F 1073 92.92 1353 reject_low 14 ALIGNMENT 832 Y12-15k11.q1k chr15 34 1078 598586 599630 F 1045 95.02 1353 ambiguous_trans 4 ALIGNMENT 711 Y12-15k11.p1k chr12 2 926 215105 216022 F 925 95.14 1256 reject_low 18 ALIGNMENT 500 Y12-15k11.p1k chr12 2 795 475999 476795 F 794 89.92 1256 reject_low 16 ALIGNMENT 634 Y12-15k11.p1k chr16 795 2 849515 850312 C 794 95.47 1256 reject_low 12 ALIGNMENT 0 Y12-15k11.p1k chr01 310 720 166163 166162 F 411 0.00 1256 reject_low 28 ALIGNMENT 717 Y12-15k11.q1k chr16 969 34 805858 806791 C 936 94.12 1353 reject_low 27 ALIGNMENT 21 Y12-15k11.p1k chr05 310 283 443365 443392 C 28 92.86 1256 reject_low 31 ALIGNMENT 876 Y12-15k11.q1k chr04 1106 34 987795 988869 C 1073 95.62 1353 reject_low 20 ALIGNMENT 770 Y12-15k11.p1k chr02 926 2 264557 265468 C 925 97.19 1256 ambiguous_trans 6 ALIGNMENT 729 Y12-15k11.p1k chr07 926 2 540748 541665 C 925 95.78 1256 ambiguous_trans 2 ALIGNMENT 571 Y12-15k11.p1k chr15 795 2 122806 123603 C 794 92.82 1256 reject_low 14 ALIGNMENT 0 Y12-15k11.p1k chr05 62 171 492691 492690 F 110 0.00 1256 reject_low 9 ALIGNMENT 23 Y12-15k11.p1k chr16 152 309 850353 850508 F 158 74.68 1256 reject_low 30 ALIGNMENT 868 Y12-15k11.q1k chr12 34 1078 654595 655639 F 1045 96.17 1353 reject_low 22 ALIGNMENT 0 Y12-15k11.p1k chr16 310 720 850508 850507 F 411 0.00 1256 reject_low 30 ALIGNMENT 894 Y12-15k11.q1k chr07 34 1099 539535 540601 F 1066 96.34 1353 ambiguous_trans 2 ALIGNMENT 0 Y12-15k11.p1k chr16 62 151 850353 850352 F 90 0.00 1256 reject_low 30 ALIGNMENT 758 Y12-15k11.q1k chr16 1106 34 851705 852779 C 1073 92.08 1353 reject_low 13 ALIGNMENT 711 Y12-15k11.p1k chr13 2 926 372720 373637 F 925 95.14 1256 reject_low 8 ALIGNMENT 53 Y12-15k11.p1k chr07 112 2 817278 817386 C 111 85.59 1256 reject_low 29 ALIGNMENT 750 Y12-15k11.q1k chr12 969 34 477195 478128 C 936 95.30 1353 reject_low 16 ALIGNMENT 869 Y12-15k11.q1k chr14 1078 34 97714 98758 C 1045 96.27 1353 ambiguous_trans 3 ALIGNMENT 752 Y12-15k11.p1k chr14 2 926 96634 97545 F 925 96.54 1256 ambiguous_trans 3 ALIGNMENT 0 Y12-15k11.p1k chr05 720 311 443366 443365 C 410 0.00 1256 reject_low 31 ALIGNMENT 789 Y12-15k11.q1k chr13 34 1106 187935 189009 F 1073 93.01 1353 reject_low 10 ALIGNMENT 493 Y12-15k11.p1k chr13 795 12 201435 202221 C 784 89.92 1256 reject_low 17 ALIGNMENT 186 Y12-15k11.p1k chr01 2 309 165851 166163 F 308 89.29 1256 reject_low 28 ALIGNMENT 660 Y12-15k11.p1k chr08 2 795 543634 544425 F 794 96.47 1256 reject_low 19 ALIGNMENT 729 Y12-15k11.p1k chr10 926 2 482945 483862 C 925 95.78 1256 ambiguous_trans 5 ALIGNMENT 906 Y12-15k11.q1k chr02 34 1099 224807 225873 F 1066 96.72 1353 ambiguous_trans 1 ALIGNMENT 886 Y12-15k11.q1k chr10 34 1078 481732 482776 F 1045 96.75 1353 ambiguous_trans 5 ALIGNMENT 765 Y12-15k11.q1k chr10 34 1106 476148 477222 F 1073 92.26 1353 reject_low 23 ALIGNMENT 789 Y12-15k11.q1k chr04 34 1106 1099533 1100607 F 1073 93.01 1353 reject_low 11 ALIGNMENT 903 Y12-15k11.q1k chr13 1099 34 358086 359152 C 1066 96.72 1353 ambiguous_trans 0 ALIGNMENT 660 Y12-15k11.p1k chr13 795 2 189268 190059 C 794 96.47 1256 reject_low 10 ALIGNMENT 0 Y12-15k11.p1k chr05 282 62 443393 443392 C 221 0.00 1256 reject_low 31 ALIGNMENT 750 Y12-15k11.q1k chr05 969 34 444613 445546 C 936 95.30 1353 reject_low 15 ALIGNMENT 579 Y12-15k11.p1k chr05 172 926 492691 493432 F 755 95.10 1256 reject_low 9 ALIGNMENT 773 Y12-15k11.p1k chr07 2 926 817422 818333 F 925 97.30 1256 ambiguous_trans 7 ALIGNMENT 781 Y12-15k11.q1k chr07 969 34 818613 819546 C 936 96.26 1353 ambiguous_trans 7 ALIGNMENT 634 Y12-15k11.p1k chr04 795 2 1100866 1101663 C 794 95.47 1256 reject_low 11 ALIGNMENT 770 Y12-15k11.p1k chr13 2 926 357028 357939 F 925 97.19 1256 ambiguous_trans 0 ALIGNMENT 794 Y12-15k11.q1k chr05 1099 34 493579 494645 C 1066 93.34 1353 reject_low 9 ALIGNMENT 751 Y12-15k11.q1k chr13 34 969 200102 201035 F 936 95.30 1353 reject_low 17 ALIGNMENT 751 Y12-15k11.q1k chr16 34 969 60222 61155 F 936 95.30 1353 reject_low 25 ALIGNMENT 500 Y12-15k11.p1k chr05 2 795 443417 444213 F 794 89.92 1256 reject_low 15 ALIGNMENT 500 Y12-15k11.p1k chr01 2 795 160263 161059 F 794 89.92 1256 reject_low 26 ALIGNMENT 0 Y12-15k11.p1k chr07 720 113 817279 817278 C 608 0.00 1256 reject_low 29 ALIGNMENT 753 Y12-15k11.q1k chr07 969 34 563064 563997 C 936 95.41 1353 reject_low 24 ALIGNMENT 773 Y12-15k11.p1k chr15 926 2 599799 600710 C 925 97.30 1256 ambiguous_trans 4 ALIGNMENT 789 Y12-15k11.q1k chr16 34 1106 848182 849256 F 1073 93.01 1353 reject_low 12 ALIGNMENT 766 Y12-15k13.p1k chr15 953 9 107168 108094 C 945 95.66 1206 accept_chi 1 ALIGNMENT 0 Y12-15k13.q1k chr10 62 260 443518 443517 F 199 0.00 1412 reject_low 2 ALIGNMENT 22 Y12-15k13.q1k chr10 261 310 443518 443567 F 50 82.00 1412 reject_low 2 ALIGNMENT 0 Y12-15k13.q1k chr10 311 791 443567 443566 F 481 0.00 1412 reject_low 2 ALIGNMENT 869 Y12-15k13.q1k chr10 35 997 443427 444382 F 963 97.72 1412 accept_chi 0 ALIGNMENT 749 Y12-15k14.p1k chr15 3 862 109530 110377 F 860 97.09 1239 accept 0 ALIGNMENT 0 Y12-15k14.q1k chr08 805 62 116748 116747 C 744 0.00 1382 reject_low 12 ALIGNMENT 0 Y12-15k14.q1k chr04 805 62 513587 513586 C 744 0.00 1382 reject_low 8 ALIGNMENT 0 Y12-15k14.q1k chr15 631 905 354112 354111 F 275 0.00 1382 reject_low 3 ALIGNMENT 0 Y12-15k14.q1k chr15 805 62 980587 980586 C 744 0.00 1382 reject_low 9 ALIGNMENT 0 Y12-15k14.q1k chr16 62 805 560478 560477 F 744 0.00 1382 reject_low 13 ALIGNMENT 934 Y12-15k14.q1k chr15 1186 39 113253 114395 C 1148 95.73 1382 accept 0 ALIGNMENT 150 Y12-15k14.q1k chr15 1141 806 980259 980586 C 336 85.12 1382 reject_low 9 ALIGNMENT 78 Y12-15k14.q1k chr09 631 550 325745 325826 C 82 98.78 1382 reject_low 2 ALIGNMENT 0 Y12-15k14.q1k chr02 62 805 259576 259575 F 744 0.00 1382 reject_low 14 ALIGNMENT 132 Y12-15k14.q1k chr06 1133 806 161810 162129 C 328 83.54 1382 reject_low 15 ALIGNMENT 0 Y12-15k14.q1k chr10 62 556 59099 59098 F 495 0.00 1382 reject_low 5 ALIGNMENT 0 Y12-15k14.q1k chr15 62 551 354034 354033 F 490 0.00 1382 reject_low 3 ALIGNMENT 0 Y12-15k14.q1k chr07 62 807 735549 735548 F 746 0.00 1382 reject_low 18 ALIGNMENT 142 Y12-15k14.q1k chr14 1141 806 102196 102523 C 336 84.23 1382 reject_low 23 ALIGNMENT 79 Y12-15k14.q1k chr15 552 630 354034 354112 F 79 100.00 1382 reject_low 3 ALIGNMENT 80 Y12-15k14.q1k chr08 552 631 116096 116175 F 80 100.00 1382 reject_low 1 ALIGNMENT 0 Y12-15k14.q1k chr01 804 62 160577 160576 C 743 0.00 1382 reject_low 19 ALIGNMENT 128 Y12-15k14.q1k chr04 1061 805 877790 878040 C 257 86.38 1382 reject_low 17 ALIGNMENT 143 Y12-15k14.q1k chr14 1141 805 96614 96942 C 337 84.27 1382 reject_low 22 ALIGNMENT 141 Y12-15k14.q1k chr13 1153 805 356995 357336 C 349 83.67 1382 reject_low 7 ALIGNMENT 0 Y12-15k14.q1k chr08 62 551 116096 116095 F 490 0.00 1382 reject_low 1 ALIGNMENT 143 Y12-15k14.q1k chr04 1148 806 513252 513586 C 343 83.97 1382 reject_low 8 ALIGNMENT 146 Y12-15k14.q1k chr04 806 1141 802900 803226 F 336 85.12 1382 reject_low 11 ALIGNMENT 74 Y12-15k14.q1k chr14 550 630 560686 560766 F 81 97.53 1382 reject_low 4 ALIGNMENT 0 Y12-15k14.q1k chr14 631 905 560766 560765 F 275 0.00 1382 reject_low 4 ALIGNMENT 0 Y12-15k14.q1k chr08 632 905 116175 116174 F 274 0.00 1382 reject_low 1 ALIGNMENT 0 Y12-15k14.q1k chr14 62 805 519164 519163 F 744 0.00 1382 reject_low 21 ALIGNMENT 0 Y12-15k14.q1k chr13 804 62 357337 357336 C 743 0.00 1382 reject_low 7 ALIGNMENT 126 Y12-15k14.q1k chr08 814 1136 133680 133993 F 323 82.97 1382 reject_low 16 ALIGNMENT 0 Y12-15k14.q1k chr10 632 905 59173 59172 F 274 0.00 1382 reject_low 5 ALIGNMENT 137 Y12-15k14.q1k chr16 806 1141 560478 560805 F 336 83.63 1382 reject_low 13 ALIGNMENT 0 Y12-15k14.q1k chr09 905 632 325746 325745 C 274 0.00 1382 reject_low 2 ALIGNMENT 0 Y12-15k14.q1k chr06 805 62 162130 162129 C 744 0.00 1382 reject_low 15 ALIGNMENT 139 Y12-15k14.q1k chr08 1141 806 116420 116747 C 336 83.93 1382 reject_low 12 ALIGNMENT 136 Y12-15k14.q1k chr02 806 1113 259576 259876 F 308 84.74 1382 reject_low 14 ALIGNMENT 0 Y12-15k14.q1k chr14 62 804 524729 524728 F 743 0.00 1382 reject_low 20 ALIGNMENT 0 Y12-15k14.q1k chr14 804 632 96943 104803 C 173 0.00 1382 reject_low 22 ALIGNMENT 0 Y12-15k14.q1k chr14 549 62 104886 104885 C 488 0.00 1382 reject_low 22,23 ALIGNMENT 0 Y12-15k14.q1k chr04 62 805 802900 802899 F 744 0.00 1382 reject_low 11 ALIGNMENT 84 Y12-15k14.q1k chr01 1141 805 160243 160576 C 337 78.34 1382 reject_low 19 ALIGNMENT 75 Y12-15k14.q1k chr10 557 631 59099 59173 F 75 100.00 1382 reject_low 5 ALIGNMENT 42 Y12-15k14.q1k chr14 806 1141 519164 519493 F 336 74.40 1382 reject_low 21 ALIGNMENT 0 Y12-15k14.q1k chr03 805 62 124463 124462 C 744 0.00 1382 reject_low 10 ALIGNMENT 0 Y12-15k14.q1k chr04 804 62 878041 878040 C 743 0.00 1382 reject_low 17 ALIGNMENT 142 Y12-15k14.q1k chr07 806 1156 535215 535557 F 351 83.48 1382 reject_low 6 ALIGNMENT 0 Y12-15k14.q1k chr14 62 549 560686 560685 F 488 0.00 1382 reject_low 4 ALIGNMENT 0 Y12-15k14.q1k chr09 549 62 325827 325826 C 488 0.00 1382 reject_low 2 ALIGNMENT 147 Y12-15k14.q1k chr03 1141 806 124135 124462 C 336 84.82 1382 reject_low 10 ALIGNMENT 101 Y12-15k14.q1k chr07 808 1064 735549 735799 F 257 83.27 1382 reject_low 18 ALIGNMENT 0 Y12-15k14.q1k chr14 805 632 102524 104803 C 174 0.00 1382 reject_low 23 ALIGNMENT 75 Y12-15k14.q1k chr14 631 550 104804 104885 C 82 97.56 1382 reject_low 22,23 ALIGNMENT 43 Y12-15k14.q1k chr14 805 1141 524729 525059 F 337 74.48 1382 reject_low 20 ALIGNMENT 0 Y12-15k14.q1k chr08 62 813 133680 133679 F 752 0.00 1382 reject_low 16 ALIGNMENT 0 Y12-15k14.q1k chr07 62 805 535215 535214 F 744 0.00 1382 reject_low 6 ALIGNMENT 0 Y12-15k15.q1k chr10 657 805 153644 153793 F 149 0.00 1310 reject_low 1 ALIGNMENT 0 Y12-15k15.q1k chr11 805 657 555445 555594 C 149 0.00 1310 reject_low 2 ALIGNMENT 0 Y12-15k15.q1k chr10 62 534 153522 153521 F 473 0.00 1310 reject_low 1 ALIGNMENT 0 Y12-15k15.q1k chr11 534 62 555717 555716 C 473 0.00 1310 reject_low 2 ALIGNMENT 30 Y12-15k15.q1k chr10 806 995 153794 153982 F 190 74.74 1310 reject_low 1 ALIGNMENT 30 Y12-15k15.q1k chr11 995 806 555256 555444 C 190 73.68 1310 reject_low 2 ALIGNMENT 1068 Y12-15k15.q1k chr04 1296 33 487131 488404 C 1264 95.81 1310 accept 0 ALIGNMENT 52 Y12-15k15.q1k chr11 656 535 555595 555716 C 122 81.97 1310 reject_low 2 ALIGNMENT 52 Y12-15k15.q1k chr10 535 656 153522 153643 F 122 81.97 1310 reject_low 1 ALIGNMENT 1009 Y12-15k15.p1k chr04 11 1207 483676 484872 F 1197 95.82 1279 accept 0 ALIGNMENT 0 Y12-15k17.p1k chr06 516 826 203258 203257 F 311 0.00 1271 reject_low 1 ALIGNMENT 0 Y12-15k17.p1k chr08 826 172 137847 137846 C 655 0.00 1271 reject_low 2 ALIGNMENT 0 Y12-15k17.p1k chr08 149 62 137868 137867 C 88 0.00 1271 reject_low 2 ALIGNMENT 22 Y12-15k17.p1k chr08 171 150 137846 137867 C 22 100.00 1271 reject_low 2 ALIGNMENT 935 Y12-15k17.q1k chr08 1101 35 140697 141759 C 1067 96.81 1347 accept 0 ALIGNMENT 995 Y12-15k17.p1k chr08 1 1149 137695 138837 F 1149 96.69 1271 accept 0 ALIGNMENT 186 Y12-15k17.p1k chr06 19 515 202762 203258 F 497 79.68 1271 reject_low 1 ALIGNMENT 909 Y12-15k18.p1k chr07 1 1081 216354 217421 F 1081 96.58 1248 accept 0 ALIGNMENT 897 Y12-15k18.q1k chr07 1134 32 219670 220785 C 1103 95.29 1283 accept 0 ALIGNMENT 883 Y12-15k19.q1k chr08 34 1007 513136 514102 F 974 98.05 1349 accept 0 ALIGNMENT 793 Y12-15k19.p1k chr08 983 3 517554 518505 C 981 95.82 1244 accept 0 ALIGNMENT 817 Y12-15k22.q1k chr13 33 958 820286 821196 F 926 97.30 1320 accept 0 ALIGNMENT 814 Y12-15k22.p1k chr13 957 1 823605 824550 C 957 96.45 1219 accept 0 ALIGNMENT 832 Y12-15k23.p1k chr02 1 935 787836 788766 F 935 97.75 1177 accept 0 ALIGNMENT 967 Y12-15k23.q1k chr02 1195 35 791272 792434 C 1161 96.21 1198 accept 0 ALIGNMENT 981 Y12-15k24.q1k chr15 1189 35 982879 984037 C 1155 96.45 1192 accept 0 ALIGNMENT 810 Y12-15k24.p1k chr15 23 1033 977915 978913 F 1011 95.45 1245 accept 0 ALIGNMENT 833 Y12-15l01.q1k chr10 1031 32 17806 18801 C 1000 95.00 1489 ambiguous_tel 1 ALIGNMENT 0 Y12-15l01.q1k chr02 122 309 805353 805352 F 188 0.00 1489 reject_low 4 ALIGNMENT 0 Y12-15l01.q1k chr07 296 122 1069000 1068999 C 175 0.00 1489 reject_low 3 ALIGNMENT 22 Y12-15l01.q1k chr07 871 940 1077173 1077242 F 70 77.14 1489 reject_low 5 ALIGNMENT 0 Y12-15l01.q1k chr07 833 870 1077136 1077172 F 38 0.00 1489 reject_low 5 ALIGNMENT 254 Y12-15l01.q1k chr02 310 832 805353 805875 F 523 82.98 1489 reject_low 4 ALIGNMENT 833 Y12-15l01.q1k chr09 1031 32 17823 18818 C 1000 95.00 1489 ambiguous_tel 0 ALIGNMENT 254 Y12-15l01.q1k chr07 310 832 1076613 1077135 F 523 82.98 1489 reject_low 5 ALIGNMENT 0 Y12-15l01.q1k chr07 122 309 1076613 1076612 F 188 0.00 1489 reject_low 5 ALIGNMENT 22 Y12-15l01.q1k chr02 871 940 805913 805982 F 70 77.14 1489 reject_low 4 ALIGNMENT 457 Y12-15l01.q1k chr07 1007 297 1068291 1068999 C 711 88.47 1489 reject_low 3 ALIGNMENT 759 Y12-15l01.q1k chr15 1031 32 23563 24569 C 1000 92.60 1489 reject_low 2 ALIGNMENT 0 Y12-15l01.q1k chr02 833 870 805876 805912 F 38 0.00 1489 reject_low 4 ALIGNMENT 446 Y12-15l03.p1k chrm 1 520 36435 36954 F 520 100.00 1260 accept 0 ALIGNMENT 804 Y12-15l03.q1k chrm 1139 35 40592 41693 C 1105 96.02 1489 accept 0 ALIGNMENT 0 Y12-15l03.p1k chrm 521 534 36955 39140 F 14 0.00 1260 accept 0 ALIGNMENT 0 Y12-15l03.q1k chr10 62 410 6998 6997 F 349 0.00 1489 reject_low 2 ALIGNMENT 173 Y12-15l03.q1k chr10 411 643 6998 7227 F 233 98.28 1489 reject_low 2 ALIGNMENT 173 Y12-15l03.q1k chr09 411 643 7015 7244 F 233 98.28 1489 reject_low 1 ALIGNMENT 297 Y12-15l03.p1k chrm 535 1097 39141 39685 F 563 92.18 1260 accept 0 ALIGNMENT 0 Y12-15l03.q1k chr09 644 866 7244 7243 F 223 0.00 1489 reject_low 1 ALIGNMENT 0 Y12-15l03.q1k chr10 644 866 7227 7226 F 223 0.00 1489 reject_low 2 ALIGNMENT 0 Y12-15l03.q1k chr09 62 410 7015 7014 F 349 0.00 1489 reject_low 1 ALIGNMENT 979 Y12-15l04.p1k chr16 1220 14 873833 875015 C 1207 95.61 1256 accept 0 ALIGNMENT 974 Y12-15l04.q1k chr16 38 1156 870493 871623 F 1119 96.07 1400 accept 0 ALIGNMENT 305 Y12-15l05.p1k chr08 12 682 353578 354246 F 671 82.71 1302 accept_chi 1 ALIGNMENT 974 Y12-15l05.q1k chr13 38 1192 704739 705900 F 1155 96.02 1376 accept_chi 0 ALIGNMENT 971 Y12-15l08.q1k chr04 1179 39 1116344 1117498 C 1141 96.32 1340 accept 0 ALIGNMENT 801 Y12-15l08.p1k chr04 1 941 1114245 1115176 F 941 97.34 1282 accept 0 ALIGNMENT 954 Y12-15l10.p1k chr15 10 1210 333579 334762 F 1201 94.84 1262 accept 0 ALIGNMENT 995 Y12-15l10.q1k chr15 1212 36 337668 338857 C 1177 95.92 1373 accept 0 ALIGNMENT 1001 Y12-15l13.q1k chr07 1195 30 737286 738455 C 1166 96.48 1338 accept_chi 0 ALIGNMENT 734 Y12-15l13.p1k chr04 3 1067 611917 612955 F 1065 92.68 1238 accept_chi 1 ALIGNMENT 982 Y12-15l14.q1k chr04 1195 31 557126 558295 C 1165 95.71 1362 accept 0 ALIGNMENT 960 Y12-15l14.p1k chr04 26 1177 553842 554988 F 1152 95.83 1285 accept 0 ALIGNMENT 0 Y12-15l15.p1k chr03 270 62 201173 201172 C 209 0.00 1304 reject_low 2 ALIGNMENT 0 Y12-15l15.p1k chr03 803 597 294377 294376 C 207 0.00 1304 reject_low 3 ALIGNMENT 982 Y12-15l15.q1k chr04 38 1257 863361 864596 F 1220 94.51 1314 accept 0 ALIGNMENT 884 Y12-15l15.p1k chr03 1217 13 13087 14273 C 1205 93.36 1304 ambiguous_tel 1 ALIGNMENT 0 Y12-15l15.p1k chr03 358 62 294614 294613 C 297 0.00 1304 reject_low 3 ALIGNMENT 219 Y12-15l15.p1k chr03 596 359 294376 294613 C 238 98.74 1304 reject_low 3 ALIGNMENT 691 Y12-15l15.p1k chr03 1217 271 200242 201172 C 947 93.14 1304 reject_low 2 ALIGNMENT 901 Y12-15l17.p1k chr12 18 1135 392581 393683 F 1118 95.53 1295 accept 0 ALIGNMENT 964 Y12-15l17.q1k chr12 1232 37 396673 397877 C 1196 94.65 1311 accept 0 ALIGNMENT 917 Y12-15l19.q1k chr11 1136 36 309380 310493 C 1101 96.09 1252 accept 0 ALIGNMENT 926 Y12-15l19.p1k chr11 13 1076 304766 305823 F 1064 96.99 1258 accept 0 ALIGNMENT 933 Y12-15l20.q1k chr06 1118 36 58382 59456 C 1083 96.68 1334 accept_chi 0 ALIGNMENT 929 Y12-15l20.p1k chr11 17 1063 131021 132059 F 1047 97.90 1275 accept_chi 1 ALIGNMENT 1043 Y12-15l21.p1k chr04 1181 20 1326059 1327219 C 1162 97.68 1195 accept 0 ALIGNMENT 955 Y12-15l21.q1k chr04 36 1214 1322344 1323536 F 1179 95.25 1245 accept 0 ALIGNMENT 728 Y12-15l23.p1k chr08 825 3 330847 331655 C 823 97.93 1228 accept 0 ALIGNMENT 833 Y12-15l23.q1k chr08 36 929 327447 328339 F 894 98.21 1221 accept 0 ALIGNMENT 919 Y12-15l24.p1k chr16 1121 13 317637 318732 C 1109 96.03 1211 accept 0 ALIGNMENT 996 Y12-15l24.q1k chr16 38 1194 316504 317670 F 1157 96.89 1199 accept 0 ALIGNMENT 935 Y12-15m01.q1k chr12 1213 30 231262 232463 C 1184 93.92 1313 accept 0 ALIGNMENT 756 Y12-15m01.p1k chr12 44 921 228014 228888 F 878 97.04 1342 accept 0 ALIGNMENT 936 Y12-15m02.q1k chr09 37 1095 534 1593 F 1059 97.07 1314 ambiguous_tel 1 ALIGNMENT 656 Y12-15m02.p1k chr12 907 101 7806 8591 C 807 95.91 1384 ambiguous_tel 14 ALIGNMENT 656 Y12-15m02.p1k chr16 101 907 945121 945906 F 807 95.91 1384 ambiguous_tel 12 ALIGNMENT 915 Y12-15m02.q1k chr07 1095 37 1089487 1090546 C 1059 96.41 1314 ambiguous_tel 10 ALIGNMENT 661 Y12-15m02.p1k chr05 944 101 2087 2903 C 844 95.38 1384 ambiguous_tel 2 ALIGNMENT 915 Y12-15m02.q1k chr16 1095 37 946587 947646 C 1059 96.41 1314 ambiguous_tel 12 ALIGNMENT 912 Y12-15m02.q1k chr13 37 1095 515 1574 F 1059 96.32 1314 ambiguous_tel 13 ALIGNMENT 912 Y12-15m02.q1k chr08 1095 37 560934 561993 C 1059 96.32 1314 ambiguous_tel 16 ALIGNMENT 882 Y12-15m02.q1k chr12 37 1095 537 1590 F 1059 95.66 1314 reject_low 17 ALIGNMENT 927 Y12-15m02.q1k chr05 37 1095 318 1377 F 1059 96.79 1314 ambiguous_tel 2 ALIGNMENT 674 Y12-15m02.q1k chr06 297 1095 2 800 F 799 95.99 1314 reject_low 18 ALIGNMENT 653 Y12-15m02.p1k chr15 101 907 1088388 1089173 F 807 95.79 1384 ambiguous_tel 7 ALIGNMENT 656 Y12-15m02.p1k chr07 101 907 1088129 1088914 F 807 95.91 1384 ambiguous_tel 10 ALIGNMENT 936 Y12-15m02.q1k chr10 37 1095 517 1576 F 1059 97.07 1314 ambiguous_tel 0 ALIGNMENT 653 Y12-15m02.p1k chr04 101 907 1529223 1530008 F 807 95.79 1384 ambiguous_tel 4 ALIGNMENT 921 Y12-15m02.q1k chr04 1095 37 1530581 1531640 C 1059 96.60 1314 ambiguous_tel 4 ALIGNMENT 921 Y12-15m02.q1k chr08 37 1095 499 1558 F 1059 96.60 1314 ambiguous_tel 3 ALIGNMENT 924 Y12-15m02.q1k chr02 37 1095 334 1393 F 1059 96.69 1314 ambiguous_tel 8 ALIGNMENT 921 Y12-15m02.q1k chr15 1095 37 1089746 1090805 C 1059 96.60 1314 ambiguous_tel 7 ALIGNMENT 648 Y12-15m02.p1k chr08 101 907 559574 560361 F 807 95.66 1384 ambiguous_tel 16 ALIGNMENT 915 Y12-15m02.q1k chr16 37 1095 331 1390 F 1059 96.41 1314 ambiguous_tel 11 ALIGNMENT 912 Y12-15m02.q1k chr12 37 1095 6174 7233 F 1059 96.32 1314 ambiguous_tel 14 ALIGNMENT 630 Y12-15m02.p1k chr08 944 101 1968 2788 C 844 94.19 1384 ambiguous_tel 3 ALIGNMENT 653 Y12-15m02.p1k chr12 101 907 1068761 1069546 F 807 95.79 1384 ambiguous_tel 5,6 ALIGNMENT 673 Y12-15m02.p1k chr10 944 101 2394 3210 C 844 95.85 1384 ambiguous_tel 0 ALIGNMENT 648 Y12-15m02.p1k chr02 907 101 2470 3257 C 807 95.66 1384 ambiguous_tel 8 ALIGNMENT 921 Y12-15m02.q1k chr12 1095 37 1076782 1077841 C 1059 96.60 1314 ambiguous_tel 6 ALIGNMENT 656 Y12-15m02.p1k chr12 907 101 2271 3056 C 807 95.91 1384 reject_low 17 ALIGNMENT 671 Y12-15m02.p1k chr09 944 101 2411 3227 C 844 95.73 1384 ambiguous_tel 1 ALIGNMENT 653 Y12-15m02.p1k chr12 101 907 1075424 1076209 F 807 95.79 1384 reject_low 19 ALIGNMENT 656 Y12-15m02.p1k chr14 907 101 2054 2839 C 807 95.91 1384 ambiguous_tel 15 ALIGNMENT 921 Y12-15m02.q1k chr12 1095 37 1070119 1071178 C 1059 96.60 1314 ambiguous_tel 5 ALIGNMENT 915 Y12-15m02.q1k chr05 1095 37 575410 576469 C 1059 96.41 1314 ambiguous_tel 9 ALIGNMENT 600 Y12-15m02.p1k chr06 907 101 1325 2093 C 807 94.30 1384 reject_low 18 ALIGNMENT 0 Y12-15m02.q1k chr06 62 296 2 1 F 235 0.00 1314 reject_low 18 ALIGNMENT 656 Y12-15m02.p1k chr05 101 907 574052 574837 F 807 95.91 1384 ambiguous_tel 9 ALIGNMENT 909 Y12-15m02.q1k chr14 37 1095 422 1481 F 1059 96.22 1314 ambiguous_tel 15 ALIGNMENT 658 Y12-15m02.p1k chr13 907 101 2147 2932 C 807 96.03 1384 ambiguous_tel 13 ALIGNMENT 656 Y12-15m02.p1k chr16 907 101 1963 2748 C 807 95.91 1384 ambiguous_tel 11 ALIGNMENT 853 Y12-15m03.p1k chr14 965 12 554921 555868 C 954 98.01 1279 accept 0 ALIGNMENT 987 Y12-15m03.q1k chr14 34 1186 549925 551087 F 1153 95.66 1361 accept 0 ALIGNMENT 632 Y12-15m06.q1k chr13 811 7 499362 500157 C 805 94.53 1250 accept 0 ALIGNMENT 509 Y12-15m07.p1k chr13 943 117 552131 552925 C 827 90.33 1490 accept 0 ALIGNMENT 0 Y12-15m07.q1k chr04 665 604 309388 309473 C 62 0.00 1397 reject_low 1 ALIGNMENT 0 Y12-15m07.q1k chr04 567 62 309511 309510 C 506 0.00 1397 reject_low 1 ALIGNMENT 288 Y12-15m07.q1k chr04 1113 666 308948 309387 C 448 89.73 1397 reject_low 1 ALIGNMENT 975 Y12-15m07.q1k chr13 32 1144 549572 550674 F 1113 97.21 1397 accept 0 ALIGNMENT 271 Y12-15m07.p1k chr04 136 555 306922 307335 F 420 89.76 1490 reject_low 1 ALIGNMENT 22 Y12-15m07.q1k chr04 603 568 309474 309510 C 36 88.89 1397 reject_low 1 ALIGNMENT 409 Y12-15m08.q1k chr16 502 35 844404 844877 C 468 97.44 1344 reject_low 9 ALIGNMENT 0 Y12-15m08.q1k chr06 181 62 158670 158669 C 120 0.00 1344 reject_low 24 ALIGNMENT 0 Y12-15m08.q1k chr15 250 62 594760 594759 C 189 0.00 1344 reject_low 25 ALIGNMENT 429 Y12-15m08.q1k chr13 498 35 184170 184633 C 464 98.92 1344 reject_low 7 ALIGNMENT 376 Y12-15m08.q1k chr10 498 35 472377 472846 C 464 95.26 1344 reject_low 16 ALIGNMENT 0 Y12-15m08.q1k chr07 499 917 817729 817728 F 419 0.00 1344 reject_low 21 ALIGNMENT 0 Y12-15m08.q1k chr07 917 499 535765 535764 C 419 0.00 1344 reject_low 15 ALIGNMENT 54 Y12-15m08.q1k chr07 370 190 817206 817387 C 181 81.22 1344 reject_low 26 ALIGNMENT 0 Y12-15m08.q1k chr08 500 917 549638 549637 F 418 0.00 1344 reject_low 6 ALIGNMENT 0 Y12-15m08.q1k chr14 917 499 102550 102549 C 419 0.00 1344 reject_low 27 ALIGNMENT 408 Y12-15m08.q1k chr14 35 498 102060 102523 F 464 97.41 1344 reject_low 12 ALIGNMENT 435 Y12-15m08.q1k chr02 501 35 259573 260039 C 467 99.14 1344 reject_low 3 ALIGNMENT 574 Y12-15m08.q1k chr14 515 1216 632482 633185 F 702 95.30 1344 accept 0 ALIGNMENT 0 Y12-15m08.q1k chr02 917 502 221038 221037 C 416 0.00 1344 reject_low 20 ALIGNMENT 0 Y12-15m08.q1k chr13 917 499 184171 184170 C 419 0.00 1344 reject_low 7 ALIGNMENT 436 Y12-15m08.q1k chr07 35 499 822848 823312 F 465 99.35 1344 reject_low 4 ALIGNMENT 0 Y12-15m08.q1k chr04 917 500 1095762 1095761 C 418 0.00 1344 reject_low 11 ALIGNMENT 0 Y12-15m08.q1k chr13 499 917 362917 362916 F 419 0.00 1344 reject_low 19 ALIGNMENT 373 Y12-15m08.q1k chr16 35 498 856081 856550 F 464 95.04 1344 reject_low 18 ALIGNMENT 0 Y12-15m08.q1k chr01 499 917 160575 160574 F 419 0.00 1344 reject_low 23 ALIGNMENT 0 Y12-15m08.q1k chr06 632 499 137556 137907 C 134 0.00 1344 reject_low 1 ALIGNMENT 0 Y12-15m08.q1k chr16 499 917 856550 856549 F 419 0.00 1344 reject_low 18 ALIGNMENT 0 Y12-15m08.q1k chr07 189 62 817388 817387 C 128 0.00 1344 reject_low 26 ALIGNMENT 29 Y12-15m08.q1k chr14 498 469 102549 102578 C 30 100.00 1344 reject_low 27 ALIGNMENT 0 Y12-15m08.q1k chr06 632 499 137556 143534 C 134 0.00 1344 reject_low 2 ALIGNMENT 168 Y12-15m08.q1k chr06 498 47 137908 138359 C 452 81.86 1344 reject_low 1 ALIGNMENT 0 Y12-15m08.q1k chr15 917 500 594821 594820 C 418 0.00 1344 reject_low 5 ALIGNMENT 430 Y12-15m08.q1k chr08 35 499 549174 549638 F 465 98.92 1344 reject_low 6 ALIGNMENT 0 Y12-15m08.q1k chr16 917 503 844405 844404 C 415 0.00 1344 reject_low 9 ALIGNMENT 302 Y12-15m08.q1k chr07 167 498 817398 817729 F 332 99.10 1344 reject_low 21 ALIGNMENT 436 Y12-15m08.q1k chr15 499 35 594820 595284 C 465 99.35 1344 reject_low 5 ALIGNMENT 0 Y12-15m08.q1k chr05 504 917 498421 498420 F 414 0.00 1344 reject_low 8 ALIGNMENT 385 Y12-15m08.q1k chr15 498 35 117702 118171 C 464 95.91 1344 reject_low 14 ALIGNMENT 0 Y12-15m08.q1k chr13 499 917 378621 378620 F 419 0.00 1344 reject_low 13 ALIGNMENT 37 Y12-15m08.q1k chr06 237 187 143867 143917 C 51 94.12 1344|2,0 reject_low 22 ALIGNMENT 71 Y12-15m08.q1k chr15 368 251 594642 594759 C 118 89.83 1344 reject_low 25 ALIGNMENT 0 Y12-15m08.q1k chr12 503 917 221010 221009 F 415 0.00 1344 reject_low 10 ALIGNMENT 403 Y12-15m08.q1k chr12 35 502 220537 221010 F 468 97.01 1344 reject_low 10 ALIGNMENT 0 Y12-15m08.q1k chr06 632 496 137556 137657 C 137 0.00 1344 reject_low 22 ALIGNMENT 157 Y12-15m08.q1k chr06 495 233 137658 137907 C 263 90.87 1344|0,3 reject_low 22 ALIGNMENT 406 Y12-15m08.q1k chr13 35 498 378152 378621 F 464 97.41 1344 reject_low 13 ALIGNMENT 376 Y12-15m08.q1k chr07 498 35 535764 536233 C 464 95.26 1344 reject_low 15 ALIGNMENT 127 Y12-15m08.q1k chr06 446 182 158408 158669 C 265 85.66 1344 reject_low 24 ALIGNMENT 0 Y12-15m08.q1k chr07 500 917 823312 823311 F 418 0.00 1344 reject_low 4 ALIGNMENT 0 Y12-15m08.q1k chr07 62 166 817398 817397 F 105 0.00 1344 reject_low 21 ALIGNMENT 0 Y12-15m08.q1k chr15 917 499 117703 117702 C 419 0.00 1344 reject_low 14 ALIGNMENT 102 Y12-15m08.q1k chr06 498 190 143535 143843 C 309 81.23 1344 reject_low 2 ALIGNMENT 0 Y12-15m08.q1k chr15 917 369 594643 594642 C 549 0.00 1344 reject_low 25 ALIGNMENT 0 Y12-15m08.q1k chr06 917 447 158409 158408 C 471 0.00 1344 reject_low 24 ALIGNMENT 702 Y12-15m08.p1k chr14 946 8 635236 636162 C 939 94.04 1175 accept 0 ALIGNMENT 365 Y12-15m08.q1k chr02 501 35 221037 221505 C 467 94.22 1344 reject_low 20 ALIGNMENT 0 Y12-15m08.q1k chr14 499 917 102523 102522 F 419 0.00 1344 reject_low 12 ALIGNMENT 372 Y12-15m08.q1k chr13 35 498 362454 362917 F 464 94.83 1344 reject_low 19 ALIGNMENT 0 Y12-15m08.q1k chr07 917 371 817207 817206 C 547 0.00 1344 reject_low 26 ALIGNMENT 0 Y12-15m08.q1k chr10 917 499 472378 472377 C 419 0.00 1344 reject_low 16 ALIGNMENT 81 Y12-15m08.q1k chr06 714 633 137474 137555 C 82 100.00 1344 reject_low 1,2,22 ALIGNMENT 0 Y12-15m08.q1k chr14 62 514 632482 632481 F 453 0.00 1344 accept 0 ALIGNMENT 404 Y12-15m08.q1k chr05 35 503 497947 498421 F 469 97.01 1344 reject_low 8 ALIGNMENT 0 Y12-15m08.q1k chr06 917 715 137475 137474 C 203 0.00 1344 reject_low 1,2,22 ALIGNMENT 0 Y12-15m08.q1k chr01 509 917 166173 166172 F 409 0.00 1344 reject_low 17 ALIGNMENT 0 Y12-15m08.q1k chr06 189 62 143844 143843 C 128 0.00 1344 reject_low 2 ALIGNMENT 0 Y12-15m08.q1k chr01 62 186 160259 160258 F 125 0.00 1344 reject_low 23 ALIGNMENT 407 Y12-15m08.q1k chr04 499 35 1095761 1096231 C 465 97.42 1344 reject_low 11 ALIGNMENT 0 Y12-15m08.q1k chr06 186 62 143918 143917 C 125 0.00 1344 reject_low 22 ALIGNMENT 301 Y12-15m08.q1k chr01 35 508 165695 166173 F 474 89.66 1344 reject_low 17 ALIGNMENT 189 Y12-15m08.q1k chr01 187 498 160259 160575 F 312 89.42 1344 reject_low 23 ALIGNMENT 0 Y12-15m08.q1k chr06 235 236 137905 143868 C 0 0.00 1344 reject_low 22 ALIGNMENT 0 Y12-15m08.q1k chr02 917 502 259574 259573 C 416 0.00 1344 reject_low 3 ALIGNMENT 0 Y12-15m08.q1k chr14 468 62 102579 102578 C 407 0.00 1344 reject_low 27 ALIGNMENT 890 Y12-15m10.q1k chr08 31 1152 74001 75128 F 1122 93.94 1311 accept 0 ALIGNMENT 828 Y12-15m10.p1k chr08 984 6 78082 79049 C 979 97.45 1275 accept 0 ALIGNMENT 938 Y12-15m11.q1k chr16 1113 36 765545 766638 C 1078 96.47 1405 accept 0 ALIGNMENT 901 Y12-15m11.p1k chr16 1 1081 762702 763760 F 1081 96.39 1292 accept 0 ALIGNMENT 965 Y12-15m12.p1k chr04 20 1246 1232635 1233861 F 1227 94.21 1246 accept 0 ALIGNMENT 905 Y12-15m12.q1k chr04 1084 34 1237187 1238246 C 1051 96.48 1404 accept 0 ALIGNMENT 821 Y12-15m13.p1k chr15 1 1056 759599 760641 F 1056 94.22 1234 accept 0 ALIGNMENT 1023 Y12-15m13.q1k chr15 1175 39 762186 763319 C 1137 97.19 1339 accept 0 ALIGNMENT 783 Y12-15m14.p1k chr01 1 969 196645 197609 F 969 95.67 1301 accept 0 ALIGNMENT 918 Y12-15m15.q1k chr16 38 1160 593764 594906 F 1123 95.01 1298 accept 0 ALIGNMENT 976 Y12-15m15.p1k chr16 1145 14 596485 597611 C 1132 96.64 1240 accept 0 ALIGNMENT 930 Y12-15m16.p1k chr12 12 1202 49605 50783 F 1191 94.37 1260 accept 0 ALIGNMENT 998 Y12-15m16.q1k chr12 1243 29 52437 53672 C 1215 95.31 1303 accept 0 ALIGNMENT 908 Y12-15m17.p1k chr12 1123 15 757316 758411 C 1109 96.12 1264 accept 0 ALIGNMENT 1014 Y12-15m17.q1k chr12 38 1247 753569 754772 F 1210 95.95 1290 accept 0 ALIGNMENT 981 Y12-15m19.q1k chr05 1164 37 129421 130561 C 1128 96.72 1258 accept 0 ALIGNMENT 955 Y12-15m19.p1k chr05 1 1061 124951 126005 F 1061 97.55 1249 accept 0 ALIGNMENT 901 Y12-15m20.p1k chr13 1064 2 882137 883184 C 1063 96.71 1286 accept 0 ALIGNMENT 969 Y12-15m20.q1k chr13 39 1219 878707 879866 F 1181 95.26 1300 accept 0 ALIGNMENT 1011 Y12-15m21.q1k chr11 38 1207 329003 330169 F 1170 96.84 1216 accept 0 ALIGNMENT 972 Y12-15m21.p1k chr11 1163 17 333423 334563 C 1147 96.43 1163 accept 0 ALIGNMENT 911 Y12-15m22.p1k chr12 22 1028 465702 466696 F 1007 97.91 1204 reject_low 1 ALIGNMENT 551 Y12-15m22.q1k chr12 1099 472 489903 490543 C 628 96.66 1185 reject_low 3 ALIGNMENT 996 Y12-15m22.q1k chr12 1128 38 451901 453009 C 1091 97.80 1185 reject_low 2 ALIGNMENT 0 Y12-15m22.q1k chr12 471 62 490544 490543 C 410 0.00 1185 reject_low 3 ALIGNMENT 911 Y12-15m22.p1k chr12 22 1028 456565 457559 F 1007 97.91 1204 accept 0 ALIGNMENT 996 Y12-15m22.q1k chr12 1128 38 461038 462146 C 1091 97.80 1185 accept 0 ALIGNMENT 85 Y12-15m23.q1k chr09 307 632 1697 2022 F 326 76.07 1252 reject_low 199 ALIGNMENT 0 Y12-15m23.q1k chr04 712 289 1530065 1530064 C 424 0.00 1252 reject_low 146 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1076426 1076425 C 80 0.00 1252 reject_low 217 ALIGNMENT 0 Y12-15m23.q1k chr14 62 450 1585 1584 F 389 0.00 1252 reject_low 303 ALIGNMENT 0 Y12-15m23.q1k chr12 450 62 1076679 1076678 C 389 0.00 1252 reject_low 301 ALIGNMENT 0 Y12-15m23.q1k chr08 222 712 1900 1899 F 491 0.00 1252 reject_low 148 ALIGNMENT 87 Y12-15m23.q1k chr16 343 628 1494 1779 F 286 77.62 1252 reject_low 198 ALIGNMENT 0 Y12-15m23.q1k chr16 633 712 1819 1818 F 80 0.00 1252 reject_low 185 ALIGNMENT 257 Y12-15m23.q1k chr14 80 502 1574 1996 F 423 87.94 1252 reject_low 30 ALIGNMENT 0 Y12-15m23.q1k chr12 712 145 1069603 1069602 C 568 0.00 1252 reject_low 264 ALIGNMENT 36 Y12-15m23.q1k chr02 451 622 1497 1668 F 172 74.42 1252 reject_low 282 ALIGNMENT 0 Y12-15m23.q1k chr16 712 503 945965 945964 C 210 0.00 1252 reject_low 16 ALIGNMENT 160 Y12-15m23.q1k chr14 33 324 1707 1998 F 292 85.96 1252 reject_low 107 ALIGNMENT 326 Y12-15m23.q1k chr16 502 33 945964 946433 C 470 90.85 1252 reject_low 16 ALIGNMENT 0 Y12-15m23.q1k chr09 62 450 1697 1696 F 389 0.00 1252 reject_low 269 ALIGNMENT 166 Y12-15m23.q1k chr09 116 632 1686 2202 F 517 78.14 1252 reject_low 99 ALIGNMENT 237 Y12-15m23.q1k chr12 34 396 7388 7750 F 363 89.53 1252 reject_low 38 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 2074 2073 F 80 0.00 1252 reject_low 44 ALIGNMENT 0 Y12-15m23.q1k chr13 62 450 1678 1677 F 389 0.00 1252 reject_low 302 ALIGNMENT 0 Y12-15m23.q1k chr13 62 414 1678 1677 F 353 0.00 1252 reject_low 276 ALIGNMENT 0 Y12-15m23.q1k chr05 414 62 575307 575306 C 353 0.00 1252 reject_low 272 ALIGNMENT 75 Y12-15m23.q1k chr05 368 628 1470 1730 F 261 77.01 1252 reject_low 225 ALIGNMENT 66 Y12-15m23.q1k chr02 368 628 1486 1746 F 261 75.86 1252 reject_low 241 ALIGNMENT 0 Y12-15m23.q1k chr08 414 62 560831 560830 C 353 0.00 1252 reject_low 274 ALIGNMENT 0 Y12-15m23.q1k chr16 712 433 945963 945962 C 280 0.00 1252 reject_low 71 ALIGNMENT 94 Y12-15m23.q1k chr07 632 307 1089058 1089383 C 326 76.99 1252 reject_low 181 ALIGNMENT 79 Y12-15m23.q1k chr16 368 632 1483 1747 F 265 77.36 1252 reject_low 220 ALIGNMENT 40 Y12-15m23.q1k chr13 415 632 1678 1895 F 218 73.39 1252 reject_low 276 ALIGNMENT 0 Y12-15m23.q1k chr07 502 222 1089020 1089000 C 281 0.00 1252 reject_low 330 ALIGNMENT 83 Y12-15m23.q1k chr12 216 44 1069602 1069774 C 173 83.82 1252 reject_low 212 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 7554 7553 F 80 0.00 1252 reject_low 316,318,340 ALIGNMENT 0 Y12-15m23.q1k chr10 62 367 1669 1668 F 306 0.00 1252 reject_low 240 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 1822 1821 F 80 0.00 1252 reject_low 226 ALIGNMENT 79 Y12-15m23.q1k chr07 632 368 1089130 1089394 C 265 77.36 1252 reject_low 216 ALIGNMENT 0 Y12-15m23.q1k chr04 712 433 1530065 1530064 C 280 0.00 1252 reject_low 68 ALIGNMENT 115 Y12-15m23.q1k chr08 632 259 560469 560842 C 374 77.81 1252 reject_low 154 ALIGNMENT 0 Y12-15m23.q1k chr02 222 502 2384 2364 F 281 0.00 1252 reject_low 325 ALIGNMENT 40 Y12-15m23.q1k chr16 415 632 1494 1711 F 218 73.39 1252 reject_low 278 ALIGNMENT 0 Y12-15m23.q1k chr05 712 531 575228 575227 C 182 0.00 1252 reject_low 298 ALIGNMENT 0 Y12-15m23.q1k chr06 453 712 1265 1264 F 260 0.00 1252 reject_low 118 ALIGNMENT 0 Y12-15m23.q1k chr05 79 62 575318 575317 C 18 0.00 1252 reject_low 26 ALIGNMENT 160 Y12-15m23.q1k chr13 33 324 1800 2091 F 292 85.96 1252 reject_low 106 ALIGNMENT 0 Y12-15m23.q1k chr16 361 712 1907 1906 F 352 0.00 1252 reject_low 54 ALIGNMENT 203 Y12-15m23.q1k chr02 34 432 2016 2414 F 399 84.71 1252 reject_low 70 ALIGNMENT 178 Y12-15m23.q1k chr12 468 44 1069602 1070026 C 425 81.65 1252 reject_low 95 ALIGNMENT 0 Y12-15m23.q1k chr04 414 62 1530478 1530477 C 353 0.00 1252 reject_low 271 ALIGNMENT 0 Y12-15m23.q1k chr10 62 79 1669 1668 F 18 0.00 1252 reject_low 33 ALIGNMENT 0 Y12-15m23.q1k chr08 367 62 560842 560841 C 306 0.00 1252 reject_low 210 ALIGNMENT 34 Y12-15m23.q1k chr12 108 44 1076265 1076329 C 65 86.15 1252 reject_low 355 ALIGNMENT 0 Y12-15m23.q1k chr12 629 712 7622 7621 F 84 0.00 1252 reject_low 311 ALIGNMENT 0 Y12-15m23.q1k chr09 62 258 1685 1684 F 197 0.00 1252 reject_low 178 ALIGNMENT 40 Y12-15m23.q1k chr07 149 34 1089001 1089116 C 116 80.17 1252 reject_low 342 ALIGNMENT 64 Y12-15m23.q1k chr10 44 236 2173 2365 F 193 78.76 1252 reject_low 249 ALIGNMENT 38 Y12-15m23.q1k chr02 44 144 2314 2414 F 101 81.19 1252 reject_low 280 ALIGNMENT 87 Y12-15m23.q1k chr12 628 343 1076393 1076678 C 286 77.62 1252 reject_low 195 ALIGNMENT 213 Y12-15m23.q1k chr14 33 360 1671 1998 F 328 89.33 1252 reject_low 53 ALIGNMENT 118 Y12-15m23.q1k chr16 288 33 945962 946217 C 256 83.20 1252 reject_low 144 ALIGNMENT 0 Y12-15m23.q1k chr08 475 712 1937 1936 F 238 0.00 1252 reject_low 145 ALIGNMENT 0 Y12-15m23.q1k chr16 62 79 1483 1482 F 18 0.00 1252 reject_low 31 ALIGNMENT 0 Y12-15m23.q1k chr12 712 289 1069603 1069602 C 424 0.00 1252 reject_low 147 ALIGNMENT 0 Y12-15m23.q1k chr13 531 712 1757 1756 F 182 0.00 1252 reject_low 302 ALIGNMENT 121 Y12-15m23.q1k chr14 163 576 1585 1998 F 414 77.29 1252 reject_low 161 ALIGNMENT 64 Y12-15m23.q1k chr09 44 236 2190 2382 F 193 78.76 1252 reject_low 248 ALIGNMENT 29 Y12-15m23.q1k chr04 530 451 1530398 1530477 C 80 80.00 1252 reject_low 297 ALIGNMENT 0 Y12-15m23.q1k chr14 531 712 1664 1663 F 182 0.00 1252 reject_low 303 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1076462 1076461 C 80 0.00 1252 reject_low 275 ALIGNMENT 237 Y12-15m23.q1k chr14 34 396 1636 1998 F 363 89.53 1252 reject_low 40 ALIGNMENT 0 Y12-15m23.q1k chr09 614 712 1895 1894 F 99 0.00 1252 reject_low 255 ALIGNMENT 94 Y12-15m23.q1k chr16 307 632 1494 1819 F 326 76.99 1252 reject_low 185 ALIGNMENT 93 Y12-15m23.q1k chr09 343 628 1697 1982 F 286 78.32 1252 reject_low 188 ALIGNMENT 0 Y12-15m23.q1k chr12 712 217 1069603 1069602 C 496 0.00 1252 reject_low 212 ALIGNMENT 40 Y12-15m23.q1k chr16 149 34 945993 946108 C 116 80.17 1252 reject_low 347 ALIGNMENT 31 Y12-15m23.q1k chr08 108 44 560417 560481 C 65 84.62 1252 reject_low 296 ALIGNMENT 0 Y12-15m23.q1k chr12 562 712 2224 2223 F 151 0.00 1252 reject_low 305 ALIGNMENT 181 Y12-15m23.q1k chr14 44 468 1574 1998 F 425 81.88 1252 reject_low 89 ALIGNMENT 0 Y12-15m23.q1k chr14 469 712 1998 1997 F 244 0.00 1252 reject_low 89 ALIGNMENT 0 Y12-15m23.q1k chr09 527 712 2384 2383 F 186 0.00 1252 reject_low 73 ALIGNMENT 0 Y12-15m23.q1k chr10 62 342 1680 1679 F 281 0.00 1252 reject_low 189 ALIGNMENT 0 Y12-15m23.q1k chr10 453 712 2365 2364 F 260 0.00 1252 reject_low 93 ALIGNMENT 364 Y12-15m23.q1k chr12 1003 235 1069247 1070015 C 769 83.88 1252 reject_low 308 ALIGNMENT 0 Y12-15m23.q1k chr05 629 712 1730 1729 F 84 0.00 1252 reject_low 225 ALIGNMENT 0 Y12-15m23.q1k chr12 433 712 7750 7749 F 280 0.00 1252 reject_low 63 ALIGNMENT 145 Y12-15m23.q1k chr05 34 344 1748 2058 F 311 83.28 1252 reject_low 126 ALIGNMENT 0 Y12-15m23.q1k chr12 217 258 2216 7324 F 42 0.00 1252 reject_low 322 ALIGNMENT 0 Y12-15m23.q1k chr14 150 502 1968 1948 F 353 0.00 1252 reject_low 345 ALIGNMENT 0 Y12-15m23.q1k chr04 712 145 1530065 1530064 C 568 0.00 1252 reject_low 260 ALIGNMENT 194 Y12-15m23.q1k chr09 34 526 1892 2384 F 493 80.93 1252 reject_low 73 ALIGNMENT 257 Y12-15m23.q1k chr16 80 502 1483 1905 F 423 87.94 1252 reject_low 31 ALIGNMENT 0 Y12-15m23.q1k chr13 62 367 1667 1666 F 306 0.00 1252 reject_low 218 ALIGNMENT 0 Y12-15m23.q1k chr16 62 306 1494 1493 F 245 0.00 1252 reject_low 185 ALIGNMENT 0 Y12-15m23.q1k chr04 258 62 1530490 1530489 C 197 0.00 1252 reject_low 167 ALIGNMENT 0 Y12-15m23.q1k chr08 712 469 560418 560417 C 244 0.00 1252 reject_low 112 ALIGNMENT 0 Y12-15m23.q1k chr16 433 712 1907 1906 F 280 0.00 1252 reject_low 66 ALIGNMENT 29 Y12-15m23.q1k chr12 530 451 1069936 1070015 C 80 80.00 1252|0,9 reject_low 323,349,355 ALIGNMENT 0 Y12-15m23.q1k chr08 712 633 560506 560505 C 80 0.00 1252 reject_low 182 ALIGNMENT 0 Y12-15m23.q1k chr10 629 712 2109 2108 F 84 0.00 1252 reject_low 114 ALIGNMENT 206 Y12-15m23.q1k chr12 432 34 1076265 1076663 C 399 84.96 1252|9,0 reject_low 317 ALIGNMENT 0 Y12-15m23.q1k chr08 712 503 560420 560419 C 210 0.00 1252 reject_low 45 ALIGNMENT 113 Y12-15m23.q1k chr02 187 634 1485 1932 F 448 75.89 1252 reject_low 163 ALIGNMENT 0 Y12-15m23.q1k chr12 414 62 1076679 1076678 C 353 0.00 1252 reject_low 275 ALIGNMENT 66 Y12-15m23.q1k chr06 44 272 1037 1265 F 229 77.29 1252 reject_low 246 ALIGNMENT 309 Y12-15m23.q1k chr02 44 502 1954 2412 F 459 90.20 1252 reject_low 20 ALIGNMENT 44 Y12-15m23.q1k chr16 144 44 945962 946062 C 101 83.17 1252 reject_low 268 ALIGNMENT 112 Y12-15m23.q1k chr10 34 344 2055 2365 F 311 79.74 1252 reject_low 171 ALIGNMENT 25 Y12-15m23.q1k chr14 503 561 1949 2007 F 59 81.36 1252 reject_low 333,345 ALIGNMENT 57 Y12-15m23.q1k chr02 415 613 1497 1695 F 199 76.88 1252 reject_low 251 ALIGNMENT 0 Y12-15m23.q1k chr05 712 289 574894 574893 C 424 0.00 1252 reject_low 138 ALIGNMENT 0 Y12-15m23.q1k chr06 309 712 1265 1264 F 404 0.00 1252 reject_low 230 ALIGNMENT 25 Y12-15m23.q1k chr07 561 503 1088961 1089019 C 59 81.36 1252 reject_low 330,342 ALIGNMENT 0 Y12-15m23.q1k chr07 712 633 1089167 1089166 C 80 0.00 1252 reject_low 273 ALIGNMENT 0 Y12-15m23.q1k chr14 62 367 1574 1573 F 306 0.00 1252 reject_low 219 ALIGNMENT 171 Y12-15m23.q1k chr12 163 632 1694 2163 F 470 79.57 1252 reject_low 96 ALIGNMENT 0 Y12-15m23.q1k chr06 62 186 892 891 F 125 0.00 1252 reject_low 250 ALIGNMENT 0 Y12-15m23.q1k chr16 62 258 1482 1481 F 197 0.00 1252 reject_low 157 ALIGNMENT 209 Y12-15m23.q1k chr12 34 432 7352 7750 F 399 85.21 1252 reject_low 63 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 7662 7661 F 80 0.00 1252 reject_low 315,319 ALIGNMENT 37 Y12-15m23.q1k chr04 149 34 1530095 1530210 C 116 79.31 1252 reject_low 351 ALIGNMENT 99 Y12-15m23.q1k chr09 259 628 1685 2054 F 370 76.49 1252 reject_low 178 ALIGNMENT 0 Y12-15m23.q1k chr13 503 712 2089 2088 F 210 0.00 1252 reject_low 29 ALIGNMENT 115 Y12-15m23.q1k chr12 288 33 1076265 1076520 C 256 82.81 1252 reject_low 320 ALIGNMENT 0 Y12-15m23.q1k chr05 712 633 574982 574981 C 80 0.00 1252 reject_low 180 ALIGNMENT 0 Y12-15m23.q1k chr05 712 503 574896 574895 C 210 0.00 1252 reject_low 26 ALIGNMENT 178 Y12-15m23.q1k chr04 468 44 1530064 1530488 C 425 81.65 1252 reject_low 94 ALIGNMENT 94 Y12-15m23.q1k chr08 632 307 560505 560830 C 326 76.99 1252 reject_low 182 ALIGNMENT 424 Y12-15m23.q1k chr16 1003 80 945607 946494 C 924 84.42 1252 ambiguous_tel 7 ALIGNMENT 40 Y12-15m23.q1k chr05 149 34 574924 575039 C 116 80.17 1252 reject_low 341 ALIGNMENT 78 Y12-15m23.q1k chr08 628 343 560545 560830 C 286 76.57 1252 reject_low 223 ALIGNMENT 0 Y12-15m23.q1k chr12 459 460 1070007 1076273 C 0 0.00 1252 reject_low 323 ALIGNMENT 0 Y12-15m23.q1k chr04 367 62 1530489 1530488 C 306 0.00 1252 reject_low 214 ALIGNMENT 0 Y12-15m23.q1k chr05 450 62 575307 575306 C 389 0.00 1252 reject_low 298 ALIGNMENT 157 Y12-15m23.q1k chr12 324 33 1069602 1069893 C 292 85.62 1252 reject_low 111 ALIGNMENT 0 Y12-15m23.q1k chr10 629 712 1965 1964 F 84 0.00 1252 reject_low 189 ALIGNMENT 0 Y12-15m23.q1k chr07 712 531 1089305 1089304 C 182 0.00 1252 reject_low 299 ALIGNMENT 0 Y12-15m23.q1k chr12 712 503 1069605 1069604 C 210 0.00 1252 reject_low 35 ALIGNMENT 0 Y12-15m23.q1k chr04 450 62 1530478 1530477 C 389 0.00 1252 reject_low 297 ALIGNMENT 0 Y12-15m23.q1k chr05 623 712 1760 1759 F 90 0.00 1252 reject_low 221 ALIGNMENT 124 Y12-15m23.q1k chr12 221 44 1076296 1076473 C 178 91.01 1252 reject_low 308 ALIGNMENT 176 Y12-15m23.q1k chr06 157 526 898 1267 F 370 83.51 1252 reject_low 101 ALIGNMENT 93 Y12-15m23.q1k chr10 343 628 1680 1965 F 286 78.32 1252 reject_low 189 ALIGNMENT 0 Y12-15m23.q1k chr10 62 414 1680 1679 F 353 0.00 1252 reject_low 256 ALIGNMENT 94 Y12-15m23.q1k chr05 632 307 574981 575306 C 326 76.99 1252 reject_low 180 ALIGNMENT 163 Y12-15m23.q1k chr08 468 44 560417 560841 C 425 80.47 1252 reject_low 112 ALIGNMENT 0 Y12-15m23.q1k chr16 450 62 946484 946483 C 389 0.00 1252 reject_low 259 ALIGNMENT 0 Y12-15m23.q1k chr06 635 712 1123 1122 F 78 0.00 1252 reject_low 190 ALIGNMENT 0 Y12-15m23.q1k chr08 234 62 560831 560830 C 173 0.00 1252 ambiguous_tel 5 ALIGNMENT 29 Y12-15m23.q1k chr12 451 530 7337 7416 F 80 80.00 1252|9,0 reject_low 321,354 ALIGNMENT 0 Y12-15m23.q1k chr12 712 562 1069594 1069593 C 151 0.00 1252 reject_low 313,337,353 ALIGNMENT 0 Y12-15m23.q1k chr06 62 115 893 892 F 54 0.00 1252 reject_low 117 ALIGNMENT 0 Y12-15m23.q1k chr12 397 712 7750 7749 F 316 0.00 1252 reject_low 38 ALIGNMENT 174 Y12-15m23.q1k chr16 632 163 946014 946483 C 470 79.79 1252 reject_low 91 ALIGNMENT 79 Y12-15m23.q1k chr04 632 368 1530224 1530488 C 265 77.36 1252 reject_low 214 ALIGNMENT 463 Y12-15m23.q1k chr02 44 1003 1846 2770 F 960 85.21 1252 ambiguous_tel 4 ALIGNMENT 0 Y12-15m23.q1k chr05 62 115 1470 1469 F 54 0.00 1252 reject_low 72 ALIGNMENT 0 Y12-15m23.q1k chr12 629 712 1979 1978 F 84 0.00 1252 reject_low 238 ALIGNMENT 0 Y12-15m23.q1k chr06 62 367 893 892 F 306 0.00 1252 reject_low 151 ALIGNMENT 160 Y12-15m23.q1k chr12 33 324 1924 2215 F 292 85.96 1252|0,9 reject_low 315 ALIGNMENT 0 Y12-15m23.q1k chr06 62 156 898 897 F 95 0.00 1252 reject_low 101 ALIGNMENT 0 Y12-15m23.q1k chr05 234 62 575307 575306 C 173 0.00 1252 ambiguous_tel 8 ALIGNMENT 0 Y12-15m23.q1k chr02 577 712 2414 2413 F 136 0.00 1252 reject_low 98 ALIGNMENT 0 Y12-15m23.q1k chr08 712 217 560418 560417 C 496 0.00 1252 reject_low 209 ALIGNMENT 29 Y12-15m23.q1k chr07 530 451 1089304 1089383 C 80 80.00 1252 reject_low 299 ALIGNMENT 34 Y12-15m23.q1k chr12 108 44 1069602 1069666 C 65 86.15 1252 reject_low 288 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1076354 1076353 C 80 0.00 1252 reject_low 177 ALIGNMENT 214 Y12-15m23.q1k chr16 360 34 945962 946288 C 327 89.60 1252 reject_low 55 ALIGNMENT 0 Y12-15m23.q1k chr09 273 712 2382 2381 F 440 0.00 1252 reject_low 242 ALIGNMENT 0 Y12-15m23.q1k chr05 258 62 575319 575318 C 197 0.00 1252 reject_low 152 ALIGNMENT 257 Y12-15m23.q1k chr05 502 80 574895 575317 C 423 87.94 1252 reject_low 26 ALIGNMENT 215 Y12-15m23.q1k chr05 33 490 1603 2060 F 458 83.41 1252 reject_low 57 ALIGNMENT 0 Y12-15m23.q1k chr14 361 712 1998 1997 F 352 0.00 1252 reject_low 53 ALIGNMENT 0 Y12-15m23.q1k chr12 289 712 7750 7749 F 424 0.00 1252 reject_low 140 ALIGNMENT 0 Y12-15m23.q1k chr08 294 712 1936 1935 F 419 0.00 1252 reject_low 76 ALIGNMENT 0 Y12-15m23.q1k chr02 62 258 1485 1484 F 197 0.00 1252 reject_low 135 ALIGNMENT 0 Y12-15m23.q1k chr09 62 342 1697 1696 F 281 0.00 1252 reject_low 188 ALIGNMENT 29 Y12-15m23.q1k chr08 530 451 560751 560830 C 80 80.00 1252 reject_low 300 ALIGNMENT 0 Y12-15m23.q1k chr06 377 712 1261 1260 F 336 0.00 1252 reject_low 125 ALIGNMENT 0 Y12-15m23.q1k chr14 325 712 1998 1997 F 388 0.00 1252 reject_low 107 ALIGNMENT 0 Y12-15m23.q1k chr07 79 62 1089395 1089394 C 18 0.00 1252 reject_low 27 ALIGNMENT 112 Y12-15m23.q1k chr12 632 259 1069654 1070027 C 374 77.54 1252 reject_low 324 ALIGNMENT 0 Y12-15m23.q1k chr13 577 712 2091 2090 F 136 0.00 1252 reject_low 160 ALIGNMENT 0 Y12-15m23.q1k chr09 62 367 1686 1685 F 306 0.00 1252 reject_low 239 ALIGNMENT 313 Y12-15m23.q1k chr02 44 628 1666 2250 F 585 85.47 1252 reject_low 17 ALIGNMENT 143 Y12-15m23.q1k chr05 163 634 1481 1952 F 472 77.54 1252 reject_low 127 ALIGNMENT 186 Y12-15m23.q1k chr02 44 396 2062 2414 F 353 85.27 1252 reject_low 82 ALIGNMENT 0 Y12-15m23.q1k chr09 629 712 2126 2125 F 84 0.00 1252 reject_low 113 ALIGNMENT 66 Y12-15m23.q1k chr05 34 272 1820 2058 F 239 76.99 1252 reject_low 244 ALIGNMENT 82 Y12-15m23.q1k chr08 216 34 560417 560599 C 183 83.06 1252 reject_low 209 ALIGNMENT 167 Y12-15m23.q1k chr08 44 293 1651 1900 F 250 90.00 1252 reject_low 102 ALIGNMENT 0 Y12-15m23.q1k chr05 629 712 1838 1837 F 84 0.00 1252 reject_low 149 ALIGNMENT 192 Y12-15m23.q1k chr16 576 44 945962 946494 C 533 79.74 1252 reject_low 77 ALIGNMENT 0 Y12-15m23.q1k chr13 629 712 1963 1962 F 84 0.00 1252 reject_low 196 ALIGNMENT 0 Y12-15m23.q1k chr12 531 712 7416 7415 F 182 0.00 1252 reject_low 321,354 ALIGNMENT 160 Y12-15m23.q1k chr05 324 33 574893 575184 C 292 85.96 1252 reject_low 103 ALIGNMENT 0 Y12-15m23.q1k chr09 633 712 1950 1949 F 80 0.00 1252 reject_low 239 ALIGNMENT 0 Y12-15m23.q1k chr16 162 62 946484 946483 C 101 0.00 1252 reject_low 91 ALIGNMENT 87 Y12-15m23.q1k chr04 628 343 1530192 1530477 C 286 77.62 1252 reject_low 192 ALIGNMENT 0 Y12-15m23.q1k chr07 712 633 1089059 1089058 C 80 0.00 1252 reject_low 181 ALIGNMENT 69 Y12-15m23.q1k chr09 44 272 2154 2382 F 229 77.73 1252 reject_low 242 ALIGNMENT 0 Y12-15m23.q1k chr16 531 712 1573 1572 F 182 0.00 1252 reject_low 304 ALIGNMENT 0 Y12-15m23.q1k chr12 62 367 1683 1682 F 306 0.00 1252 reject_low 232 ALIGNMENT 0 Y12-15m23.q1k chr06 62 438 892 891 F 377 0.00 1252 reject_low 254 ALIGNMENT 43 Y12-15m23.q1k chr12 451 632 1694 1875 F 182 75.27 1252 reject_low 258 ALIGNMENT 303 Y12-15m23.q1k chr08 343 1005 1662 2299 F 663 84.31 1252 ambiguous_tel 15 ALIGNMENT 79 Y12-15m23.q1k chr12 632 368 1076425 1076689 C 265 77.36 1252 reject_low 217 ALIGNMENT 209 Y12-15m23.q1k chr14 34 432 1600 1998 F 399 85.21 1252 reject_low 65 ALIGNMENT 0 Y12-15m23.q1k chr06 629 712 1009 1008 F 84 0.00 1252 reject_low 257 ALIGNMENT 111 Y12-15m23.q1k chr08 34 221 1713 1900 F 188 87.77 1252 reject_low 148 ALIGNMENT 0 Y12-15m23.q1k chr08 712 325 560418 560417 C 388 0.00 1252 reject_low 133 ALIGNMENT 210 Y12-15m23.q1k chr12 360 33 1076265 1076592 C 328 89.02 1252|9,0 reject_low 310 ALIGNMENT 59 Y12-15m23.q1k chr08 451 636 1662 1847 F 186 77.96 1252 reject_low 237 ALIGNMENT 149 Y12-15m23.q1k chr08 80 366 1651 1937 F 287 85.02 1252 reject_low 131 ALIGNMENT 87 Y12-15m23.q1k chr07 628 343 1089098 1089383 C 286 77.62 1252 reject_low 194 ALIGNMENT 114 Y12-15m23.q1k chr12 187 632 1682 2127 F 446 76.01 1252 reject_low 164 ALIGNMENT 367 Y12-15m23.q1k chr16 235 1003 1494 2262 F 769 84.01 1252 ambiguous_tel 11 ALIGNMENT 158 Y12-15m23.q1k chr09 187 628 1685 2126 F 442 79.41 1252 reject_low 113 ALIGNMENT 0 Y12-15m23.q1k chr16 217 712 1907 1906 F 496 0.00 1252 reject_low 206 ALIGNMENT 0 Y12-15m23.q1k chr08 712 577 560418 560417 C 136 0.00 1252 reject_low 191 ALIGNMENT 0 Y12-15m23.q1k chr07 306 62 1089384 1089383 C 245 0.00 1252 reject_low 181 ALIGNMENT 0 Y12-15m23.q1k chr16 469 712 1907 1906 F 244 0.00 1252 reject_low 90 ALIGNMENT 86 Y12-15m23.q1k chr16 216 44 945962 946134 C 173 84.39 1252 reject_low 207 ALIGNMENT 0 Y12-15m23.q1k chr08 712 629 560582 560581 C 84 0.00 1252 reject_low 210 ALIGNMENT 0 Y12-15m23.q1k chr10 273 712 2365 2364 F 440 0.00 1252 reject_low 243 ALIGNMENT 685 Y12-15m23.q1k chr10 34 1003 1767 2724 F 970 91.34 1252 ambiguous_tel 0 ALIGNMENT 0 Y12-15m23.q1k chr02 614 712 1767 1766 F 99 0.00 1252 reject_low 233 ALIGNMENT 157 Y12-15m23.q1k chr04 324 33 1530064 1530355 C 292 85.62 1252 reject_low 110 ALIGNMENT 0 Y12-15m23.q1k chr16 367 62 946495 946494 C 306 0.00 1252 reject_low 227 ALIGNMENT 0 Y12-15m23.q1k chr09 62 186 1685 1684 F 125 0.00 1252 reject_low 113 ALIGNMENT 0 Y12-15m23.q1k chr07 234 62 1089384 1089383 C 173 0.00 1252 ambiguous_tel 9 ALIGNMENT 100 Y12-15m23.q1k chr05 307 632 1481 1806 F 326 77.61 1252 reject_low 175 ALIGNMENT 117 Y12-15m23.q1k chr16 632 187 946050 946495 C 446 76.23 1252 reject_low 150 ALIGNMENT 87 Y12-15m23.q1k chr05 628 343 575021 575306 C 286 77.62 1252 reject_low 193 ALIGNMENT 0 Y12-15m23.q1k chr08 294 712 1900 1899 F 419 0.00 1252 reject_low 102 ALIGNMENT 0 Y12-15m23.q1k chr13 62 342 1678 1677 F 281 0.00 1252 reject_low 196 ALIGNMENT 79 Y12-15m23.q1k chr12 307 632 1694 2019 F 326 75.46 1252 reject_low 222 ALIGNMENT 0 Y12-15m23.q1k chr12 222 234 2185 7336 F 13 0.00 1252 reject_low 307 ALIGNMENT 94 Y12-15m23.q1k chr13 307 632 1678 2003 F 326 76.99 1252 reject_low 183 ALIGNMENT 0 Y12-15m23.q1k chr10 633 712 2005 2004 F 80 0.00 1252 reject_low 200 ALIGNMENT 370 Y12-15m23.q1k chr13 235 1003 1678 2446 F 769 84.14 1252 ambiguous_tel 6 ALIGNMENT 154 Y12-15m23.q1k chr10 44 490 1921 2367 F 447 79.19 1252 reject_low 120 ALIGNMENT 237 Y12-15m23.q1k chr07 396 34 1088970 1089332 C 363 89.53 1252 reject_low 37 ALIGNMENT 0 Y12-15m23.q1k chr09 453 712 2382 2381 F 260 0.00 1252 reject_low 92 ALIGNMENT 0 Y12-15m23.q1k chr12 62 162 1694 1693 F 101 0.00 1252 reject_low 96 ALIGNMENT 0 Y12-15m23.q1k chr05 491 712 2060 2059 F 222 0.00 1252 reject_low 57 ALIGNMENT 132 Y12-15m23.q1k chr02 34 288 2160 2414 F 255 85.10 1252 reject_low 134 ALIGNMENT 0 Y12-15m23.q1k chr05 712 145 574894 574893 C 568 0.00 1252 reject_low 261 ALIGNMENT 0 Y12-15m23.q1k chr08 712 629 560546 560545 C 84 0.00 1252 reject_low 223 ALIGNMENT 0 Y12-15m23.q1k chr02 635 712 1932 1931 F 78 0.00 1252 reject_low 163 ALIGNMENT 43 Y12-15m23.q1k chr16 632 451 946302 946483 C 182 75.27 1252 reject_low 259 ALIGNMENT 0 Y12-15m23.q1k chr02 145 712 2414 2413 F 568 0.00 1252 reject_low 280 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 2218 2217 F 80 0.00 1252 reject_low 46 ALIGNMENT 0 Y12-15m23.q1k chr05 712 217 574894 574893 C 496 0.00 1252 reject_low 201 ALIGNMENT 25 Y12-15m23.q1k chr08 561 503 560408 560466 C 59 81.36 1252 reject_low 326,352 ALIGNMENT 0 Y12-15m23.q1k chr12 150 414 2185 7336 F 265 0.00 1252 reject_low 340 ALIGNMENT 0 Y12-15m23.q1k chr12 562 712 7759 7758 F 151 0.00 1252 reject_low 309,331,343 ALIGNMENT 0 Y12-15m23.q1k chr14 62 414 1585 1584 F 353 0.00 1252 reject_low 277 ALIGNMENT 145 Y12-15m23.q1k chr02 44 221 2206 2383 F 178 94.94 1252 reject_low 325 ALIGNMENT 0 Y12-15m23.q1k chr12 162 145 1070016 1076264 C 18 0.00 1252 reject_low 328 ALIGNMENT 0 Y12-15m23.q1k chr02 635 712 2004 2003 F 78 0.00 1252 reject_low 60 ALIGNMENT 0 Y12-15m23.q1k chr13 397 712 2091 2090 F 316 0.00 1252 reject_low 39 ALIGNMENT 0 Y12-15m23.q1k chr09 62 306 1697 1696 F 245 0.00 1252 reject_low 199 ALIGNMENT 0 Y12-15m23.q1k chr16 62 414 1494 1493 F 353 0.00 1252 reject_low 278 ALIGNMENT 0 Y12-15m23.q1k chr13 633 712 1931 1930 F 80 0.00 1252 reject_low 218 ALIGNMENT 0 Y12-15m23.q1k chr12 79 62 1070027 1070026 C 18 0.00 1252 reject_low 35 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 2146 2145 F 80 0.00 1252 reject_low 19 ALIGNMENT 0 Y12-15m23.q1k chr05 712 433 574894 574893 C 280 0.00 1252 reject_low 61 ALIGNMENT 0 Y12-15m23.q1k chr10 62 306 1680 1679 F 245 0.00 1252 reject_low 200 ALIGNMENT 25 Y12-15m23.q1k chr12 503 561 7701 7759 F 59 81.36 1252 reject_low 309,331,343 ALIGNMENT 44 Y12-15m23.q1k chr12 44 144 7650 7750 F 101 83.17 1252 reject_low 263 ALIGNMENT 40 Y12-15m23.q1k chr05 632 415 575089 575306 C 218 73.39 1252 reject_low 272 ALIGNMENT 0 Y12-15m23.q1k chr07 712 361 1088971 1088970 C 352 0.00 1252 reject_low 50 ALIGNMENT 96 Y12-15m23.q1k chr10 235 628 1680 2073 F 394 75.63 1252 reject_low 187 ALIGNMENT 0 Y12-15m23.q1k chr10 62 450 1680 1679 F 389 0.00 1252 reject_low 270 ALIGNMENT 0 Y12-15m23.q1k chr14 633 712 1910 1909 F 80 0.00 1252 reject_low 184 ALIGNMENT 25 Y12-15m23.q1k chr13 503 561 2042 2100 F 59 81.36 1252 reject_low 332,344 ALIGNMENT 0 Y12-15m23.q1k chr05 306 62 575307 575306 C 245 0.00 1252 reject_low 180 ALIGNMENT 44 Y12-15m23.q1k chr13 44 144 1991 2091 F 101 83.17 1252 reject_low 265 ALIGNMENT 0 Y12-15m23.q1k chr08 123 712 1909 1908 F 590 0.00 1252 reject_low 279 ALIGNMENT 234 Y12-15m23.q1k chr04 396 34 1530064 1530426 C 363 89.26 1252 reject_low 42 ALIGNMENT 0 Y12-15m23.q1k chr08 450 62 560831 560830 C 389 0.00 1252 reject_low 300 ALIGNMENT 0 Y12-15m23.q1k chr05 502 222 574943 574923 C 281 0.00 1252 reject_low 329 ALIGNMENT 145 Y12-15m23.q1k chr16 632 259 946122 946495 C 374 80.48 1252 reject_low 124 ALIGNMENT 118 Y12-15m23.q1k chr16 33 288 1652 1907 F 256 83.20 1252 reject_low 143 ALIGNMENT 0 Y12-15m23.q1k chr08 87 712 1909 1908 F 626 0.00 1252 reject_low 283 ALIGNMENT 0 Y12-15m23.q1k chr05 62 367 1470 1469 F 306 0.00 1252 reject_low 225 ALIGNMENT 0 Y12-15m23.q1k chr02 62 414 1497 1496 F 353 0.00 1252 reject_low 251 ALIGNMENT 160 Y12-15m23.q1k chr16 33 324 1616 1907 F 292 85.96 1252 reject_low 108 ALIGNMENT 34 Y12-15m23.q1k chr04 108 44 1530064 1530128 C 65 86.15 1252 reject_low 284 ALIGNMENT 0 Y12-15m23.q1k chr12 450 150 1070016 1076295 C 301 0.00 1252 reject_low 349 ALIGNMENT 0 Y12-15m23.q1k chr13 62 258 1666 1665 F 197 0.00 1252 reject_low 155 ALIGNMENT 0 Y12-15m23.q1k chr13 562 712 2100 2099 F 151 0.00 1252 reject_low 332,344 ALIGNMENT 0 Y12-15m23.q1k chr12 62 79 7326 7325 F 18 0.00 1252 reject_low 28 ALIGNMENT 0 Y12-15m23.q1k chr16 79 62 946495 946494 C 18 0.00 1252 ambiguous_tel 7 ALIGNMENT 0 Y12-15m23.q1k chr06 237 712 1265 1264 F 476 0.00 1252 reject_low 247 ALIGNMENT 0 Y12-15m23.q1k chr06 62 512 894 893 F 451 0.00 1252 reject_low 257 ALIGNMENT 29 Y12-15m23.q1k chr16 451 530 1494 1573 F 80 80.00 1252 reject_low 304 ALIGNMENT 142 Y12-15m23.q1k chr02 235 632 1497 1894 F 398 79.40 1252 reject_low 130 ALIGNMENT 0 Y12-15m23.q1k chr08 62 162 1662 1661 F 101 0.00 1252 reject_low 169 ALIGNMENT 86 Y12-15m23.q1k chr13 44 216 1919 2091 F 173 84.39 1252 reject_low 204 ALIGNMENT 127 Y12-15m23.q1k chr16 221 44 945993 946170 C 178 91.57 1252 reject_low 335 ALIGNMENT 237 Y12-15m23.q1k chr16 34 396 1545 1907 F 363 89.53 1252 reject_low 41 ALIGNMENT 0 Y12-15m23.q1k chr12 712 531 1076600 1076599 C 182 0.00 1252 reject_low 301 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 1966 1965 F 80 0.00 1252 reject_low 115 ALIGNMENT 112 Y12-15m23.q1k chr12 632 259 1076317 1076690 C 374 77.54 1252 reject_low 168 ALIGNMENT 0 Y12-15m23.q1k chr08 375 712 1909 1908 F 338 0.00 1252 reject_low 122 ALIGNMENT 121 Y12-15m23.q1k chr05 576 163 574893 575306 C 414 77.29 1252 reject_low 158 ALIGNMENT 25 Y12-15m23.q1k chr02 503 561 2365 2423 F 59 81.36 1252 reject_low 325,350 ALIGNMENT 0 Y12-15m23.q1k chr12 289 306 2216 7336 F 18 0.00 1252 reject_low 319 ALIGNMENT 159 Y12-15m23.q1k chr08 259 561 1650 1952 F 303 85.15 1252 reject_low 116 ALIGNMENT 0 Y12-15m23.q1k chr05 633 712 1914 1913 F 80 0.00 1252 reject_low 137 ALIGNMENT 0 Y12-15m23.q1k chr10 629 712 1857 1856 F 84 0.00 1252 reject_low 270 ALIGNMENT 166 Y12-15m23.q1k chr10 116 632 1669 2185 F 517 78.14 1252 reject_low 100 ALIGNMENT 0 Y12-15m23.q1k chr10 62 234 1680 1679 F 173 0.00 1252 reject_low 187 ALIGNMENT 682 Y12-15m23.q1k chr09 34 1003 1784 2741 F 970 91.24 1252 ambiguous_tel 1 ALIGNMENT 0 Y12-15m23.q1k chr10 237 712 2365 2364 F 476 0.00 1252 reject_low 249 ALIGNMENT 0 Y12-15m23.q1k chr09 635 712 2240 2239 F 78 0.00 1252 reject_low 32 ALIGNMENT 181 Y12-15m23.q1k chr05 468 44 574893 575317 C 425 81.88 1252 reject_low 85 ALIGNMENT 206 Y12-15m23.q1k chr04 432 34 1530064 1530462 C 399 84.96 1252 reject_low 68 ALIGNMENT 0 Y12-15m23.q1k chr08 502 150 560467 560447 C 353 0.00 1252 reject_low 352 ALIGNMENT 0 Y12-15m23.q1k chr02 62 450 1497 1496 F 389 0.00 1252 reject_low 282 ALIGNMENT 0 Y12-15m23.q1k chr16 397 712 1907 1906 F 316 0.00 1252 reject_low 41 ALIGNMENT 0 Y12-15m23.q1k chr16 712 633 946303 946302 C 80 0.00 1252 reject_low 259 ALIGNMENT 97 Y12-15m23.q1k chr12 632 307 1069690 1070015 C 326 77.30 1252|0,9 reject_low 314,320 ALIGNMENT 0 Y12-15m23.q1k chr08 62 306 1662 1661 F 245 0.00 1252 reject_low 173 ALIGNMENT 0 Y12-15m23.q1k chr02 62 186 1485 1484 F 125 0.00 1252 reject_low 163 ALIGNMENT 173 Y12-15m23.q1k chr09 33 376 2035 2378 F 344 84.59 1252 reject_low 83 ALIGNMENT 0 Y12-15m23.q1k chr05 712 361 574894 574893 C 352 0.00 1252 reject_low 49 ALIGNMENT 160 Y12-15m23.q1k chr07 324 33 1088970 1089261 C 292 85.96 1252 reject_low 104 ALIGNMENT 0 Y12-15m23.q1k chr16 712 217 945963 945962 C 496 0.00 1252 reject_low 207 ALIGNMENT 0 Y12-15m23.q1k chr13 62 162 1678 1677 F 101 0.00 1252 reject_low 160 ALIGNMENT 0 Y12-15m23.q1k chr07 367 62 1089395 1089394 C 306 0.00 1252 reject_low 216 ALIGNMENT 29 Y12-15m23.q1k chr14 451 530 1585 1664 F 80 80.00 1252 reject_low 303 ALIGNMENT 0 Y12-15m23.q1k chr07 342 62 1089384 1089383 C 281 0.00 1252 reject_low 194 ALIGNMENT 0 Y12-15m23.q1k chr10 633 712 1933 1932 F 80 0.00 1252 reject_low 240 ALIGNMENT 0 Y12-15m23.q1k chr10 637 712 2309 2308 F 76 0.00 1252 reject_low 24 ALIGNMENT 213 Y12-15m23.q1k chr13 33 360 1764 2091 F 328 89.33 1252 reject_low 52 ALIGNMENT 0 Y12-15m23.q1k chr07 712 325 1088971 1088970 C 388 0.00 1252 reject_low 104 ALIGNMENT 0 Y12-15m23.q1k chr12 503 712 7748 7747 F 210 0.00 1252 reject_low 28 ALIGNMENT 161 Y12-15m23.q1k chr06 116 490 893 1267 F 375 81.87 1252 reject_low 117 ALIGNMENT 0 Y12-15m23.q1k chr05 635 712 1988 1987 F 78 0.00 1252 reject_low 72 ALIGNMENT 74 Y12-15m23.q1k chr06 34 308 991 1265 F 275 76.73 1252 reject_low 230 ALIGNMENT 25 Y12-15m23.q1k chr16 503 561 1858 1916 F 59 81.36 1252 reject_low 334,346 ALIGNMENT 0 Y12-15m23.q1k chr12 351 352 1070007 1076273 C 0 0.00 1252 reject_low 310 ALIGNMENT 0 Y12-15m23.q1k chr10 633 712 2185 2184 F 80 0.00 1252 reject_low 100 ALIGNMENT 233 Y12-15m23.q1k chr08 502 80 560419 560841 C 423 86.05 1252 reject_low 45 ALIGNMENT 0 Y12-15m23.q1k chr16 186 62 946496 946495 C 125 0.00 1252 reject_low 150 ALIGNMENT 34 Y12-15m23.q1k chr16 108 44 945962 946026 C 65 86.15 1252 reject_low 292 ALIGNMENT 0 Y12-15m23.q1k chr12 712 629 1069731 1069730 C 84 0.00 1252 reject_low 310 ALIGNMENT 0 Y12-15m23.q1k chr05 502 150 574943 574923 C 353 0.00 1252 reject_low 341 ALIGNMENT 0 Y12-15m23.q1k chr02 62 367 1486 1485 F 306 0.00 1252 reject_low 241 ALIGNMENT 243 Y12-15m23.q1k chr09 33 636 1711 2326 F 604 81.46 1252 reject_low 23 ALIGNMENT 0 Y12-15m23.q1k chr12 150 502 7720 7700 F 353 0.00 1252 reject_low 343 ALIGNMENT 0 Y12-15m23.q1k chr08 712 633 560614 560613 C 80 0.00 1252 reject_low 274 ALIGNMENT 0 Y12-15m23.q1k chr12 352 351 2207 7345 F 0 0.00 1252 reject_low 311 ALIGNMENT 112 Y12-15m23.q1k chr04 632 259 1530116 1530489 C 374 77.54 1252 reject_low 167 ALIGNMENT 108 Y12-15m23.q1k chr06 368 634 893 1159 F 267 80.90 1252 reject_low 151 ALIGNMENT 0 Y12-15m23.q1k chr12 258 62 1076691 1076690 C 197 0.00 1252 reject_low 168 ALIGNMENT 0 Y12-15m23.q1k chr05 367 62 575318 575317 C 306 0.00 1252 reject_low 215 ALIGNMENT 0 Y12-15m23.q1k chr13 62 306 1678 1677 F 245 0.00 1252 reject_low 183 ALIGNMENT 0 Y12-15m23.q1k chr08 633 712 1879 1878 F 80 0.00 1252 reject_low 234 ALIGNMENT 0 Y12-15m23.q1k chr12 424 423 2207 7345 F 0 0.00 1252 reject_low 318 ALIGNMENT 25 Y12-15m23.q1k chr12 503 561 2166 2224 F 59 81.36 1252 reject_low 305 ALIGNMENT 295 Y12-15m23.q1k chr02 34 628 1692 2286 F 595 84.20 1252 reject_low 18 ALIGNMENT 0 Y12-15m23.q1k chr02 469 712 2414 2413 F 244 0.00 1252 reject_low 79 ALIGNMENT 0 Y12-15m23.q1k chr12 712 469 1069603 1069602 C 244 0.00 1252 reject_low 95 ALIGNMENT 86 Y12-15m23.q1k chr05 216 44 574893 575065 C 173 84.39 1252 reject_low 201 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1076318 1076317 C 80 0.00 1252 reject_low 168 ALIGNMENT 69 Y12-15m23.q1k chr10 44 272 2137 2365 F 229 77.73 1252 reject_low 243 ALIGNMENT 0 Y12-15m23.q1k chr13 62 234 1678 1677 F 173 0.00 1252 ambiguous_tel 6 ALIGNMENT 0 Y12-15m23.q1k chr10 62 186 1668 1667 F 125 0.00 1252 reject_low 114 ALIGNMENT 0 Y12-15m23.q1k chr06 62 79 893 892 F 18 0.00 1252 reject_low 118 ALIGNMENT 117 Y12-15m23.q1k chr05 259 628 1469 1838 F 370 78.11 1252 reject_low 149 ALIGNMENT 0 Y12-15m23.q1k chr13 633 712 2003 2002 F 80 0.00 1252 reject_low 183 ALIGNMENT 44 Y12-15m23.q1k chr04 144 44 1530064 1530164 C 101 83.17 1252 reject_low 260 ALIGNMENT 0 Y12-15m23.q1k chr12 62 306 1694 1693 F 245 0.00 1252 reject_low 222 ALIGNMENT 97 Y12-15m23.q1k chr04 632 307 1530152 1530477 C 326 77.30 1252 reject_low 176 ALIGNMENT 86 Y12-15m23.q1k chr07 216 44 1088970 1089142 C 173 84.39 1252 reject_low 202 ALIGNMENT 0 Y12-15m23.q1k chr06 62 258 892 891 F 197 0.00 1252 ambiguous_tel 2 ALIGNMENT 0 Y12-15m23.q1k chr14 633 712 1802 1801 F 80 0.00 1252 reject_low 277 ALIGNMENT 213 Y12-15m23.q1k chr16 33 360 1580 1907 F 328 89.33 1252 reject_low 54 ALIGNMENT 0 Y12-15m23.q1k chr12 62 258 1682 1681 F 197 0.00 1252 reject_low 129 ALIGNMENT 0 Y12-15m23.q1k chr12 361 712 7750 7749 F 352 0.00 1252 reject_low 51 ALIGNMENT 34 Y12-15m23.q1k chr12 44 108 2151 2215 F 65 86.15 1252 reject_low 354 ALIGNMENT 0 Y12-15m23.q1k chr09 637 712 2326 2325 F 76 0.00 1252 reject_low 23 ALIGNMENT 106 Y12-15m23.q1k chr06 44 344 965 1265 F 301 79.40 1252 reject_low 174 ALIGNMENT 0 Y12-15m23.q1k chr14 633 712 1838 1837 F 80 0.00 1252 reject_low 219 ALIGNMENT 0 Y12-15m23.q1k chr16 712 361 945963 945962 C 352 0.00 1252 reject_low 55 ALIGNMENT 160 Y12-15m23.q1k chr12 33 324 7459 7750 F 292 85.96 1252 reject_low 105 ALIGNMENT 72 Y12-15m23.q1k chr16 628 343 946198 946483 C 286 75.87 1252 reject_low 231 ALIGNMENT 127 Y12-15m23.q1k chr13 44 221 1883 2060 F 178 91.57 1252 reject_low 332 ALIGNMENT 136 Y12-15m23.q1k chr08 288 33 560417 560672 C 256 85.55 1252 reject_low 132 ALIGNMENT 71 Y12-15m23.q1k chr10 34 308 2091 2365 F 275 76.36 1252 reject_low 236 ALIGNMENT 134 Y12-15m23.q1k chr02 44 324 2134 2414 F 281 83.63 1252 reject_low 136 ALIGNMENT 147 Y12-15m23.q1k chr16 628 235 946090 946483 C 394 79.95 1252 reject_low 123 ALIGNMENT 0 Y12-15m23.q1k chr13 469 712 2091 2090 F 244 0.00 1252 reject_low 88 ALIGNMENT 0 Y12-15m23.q1k chr06 633 712 1085 1084 F 80 0.00 1252 reject_low 254 ALIGNMENT 40 Y12-15m23.q1k chr12 632 415 1069798 1070015 C 218 73.39 1252|0,9 reject_low 312,317 ALIGNMENT 40 Y12-15m23.q1k chr12 34 149 7604 7719 F 116 80.17 1252 reject_low 343 ALIGNMENT 0 Y12-15m23.q1k chr02 62 162 1497 1496 F 101 0.00 1252 reject_low 115 ALIGNMENT 0 Y12-15m23.q1k chr10 62 115 1669 1668 F 54 0.00 1252 reject_low 100 ALIGNMENT 0 Y12-15m23.q1k chr16 503 712 1905 1904 F 210 0.00 1252 reject_low 31 ALIGNMENT 0 Y12-15m23.q1k chr16 502 222 946012 945992 C 281 0.00 1252 reject_low 335 ALIGNMENT 0 Y12-15m23.q1k chr12 577 712 2215 2214 F 136 0.00 1252 reject_low 78 ALIGNMENT 34 Y12-15m23.q1k chr12 44 108 7686 7750 F 65 86.15 1252 reject_low 287 ALIGNMENT 0 Y12-15m23.q1k chr08 712 531 560752 560751 C 182 0.00 1252 reject_low 300 ALIGNMENT 0 Y12-15m23.q1k chr10 377 712 2361 2360 F 336 0.00 1252 reject_low 84 ALIGNMENT 40 Y12-15m23.q1k chr14 415 632 1585 1802 F 218 73.39 1252 reject_low 277 ALIGNMENT 367 Y12-15m23.q1k chr07 1003 235 1088615 1089383 C 769 84.01 1252 ambiguous_tel 9 ALIGNMENT 121 Y12-15m23.q1k chr16 163 576 1494 1907 F 414 77.29 1252 reject_low 162 ALIGNMENT 0 Y12-15m23.q1k chr16 62 450 1494 1493 F 389 0.00 1252 reject_low 304 ALIGNMENT 0 Y12-15m23.q1k chr05 237 712 2058 2057 F 476 0.00 1252 reject_low 228 ALIGNMENT 0 Y12-15m23.q1k chr02 62 342 1497 1496 F 281 0.00 1252 reject_low 233 ALIGNMENT 210 Y12-15m23.q1k chr12 360 33 1069602 1069929 C 328 89.02 1252 reject_low 59 ALIGNMENT 0 Y12-15m23.q1k chr07 162 62 1089384 1089383 C 101 0.00 1252 reject_low 159 ALIGNMENT 76 Y12-15m23.q1k chr02 307 632 1497 1822 F 326 75.15 1252 reject_low 226 ALIGNMENT 0 Y12-15m23.q1k chr12 145 712 7750 7749 F 568 0.00 1252 reject_low 263 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 1858 1857 F 80 0.00 1252 reject_low 135 ALIGNMENT 370 Y12-15m23.q1k chr12 235 1003 7337 8105 F 769 84.14 1252 reject_low 307 ALIGNMENT 0 Y12-15m23.q1k chr05 377 712 2054 2053 F 336 0.00 1252 reject_low 121 ALIGNMENT 115 Y12-15m23.q1k chr04 288 33 1530064 1530319 C 256 82.81 1252 reject_low 146 ALIGNMENT 225 Y12-15m23.q1k chr16 396 44 945962 946314 C 353 88.95 1252 reject_low 47 ALIGNMENT 0 Y12-15m23.q1k chr16 342 62 946484 946483 C 281 0.00 1252 reject_low 231 ALIGNMENT 257 Y12-15m23.q1k chr12 80 502 7326 7748 F 423 87.94 1252 reject_low 28 ALIGNMENT 0 Y12-15m23.q1k chr13 289 712 2091 2090 F 424 0.00 1252 reject_low 141 ALIGNMENT 0 Y12-15m23.q1k chr13 361 712 2091 2090 F 352 0.00 1252 reject_low 52 ALIGNMENT 0 Y12-15m23.q1k chr06 259 712 963 962 F 454 0.00 1252 reject_low 250 ALIGNMENT 0 Y12-15m23.q1k chr05 62 258 1469 1468 F 197 0.00 1252 reject_low 149 ALIGNMENT 145 Y12-15m23.q1k chr08 221 44 560448 560625 C 178 94.94 1252 reject_low 326 ALIGNMENT 115 Y12-15m23.q1k chr07 632 259 1089022 1089395 C 374 77.81 1252 reject_low 153 ALIGNMENT 79 Y12-15m23.q1k chr13 368 632 1667 1931 F 265 77.36 1252 reject_low 218 ALIGNMENT 0 Y12-15m23.q1k chr16 258 62 946496 946495 C 197 0.00 1252 reject_low 124 ALIGNMENT 210 Y12-15m23.q1k chr04 360 33 1530064 1530391 C 328 89.02 1252 reject_low 58 ALIGNMENT 0 Y12-15m23.q1k chr05 712 577 574894 574893 C 136 0.00 1252 reject_low 158 ALIGNMENT 127 Y12-15m23.q1k chr12 44 221 7542 7719 F 178 91.57 1252 reject_low 331 ALIGNMENT 0 Y12-15m23.q1k chr08 502 222 560467 560447 C 281 0.00 1252 reject_low 326 ALIGNMENT 0 Y12-15m23.q1k chr09 633 712 2022 2021 F 80 0.00 1252 reject_low 199 ALIGNMENT 0 Y12-15m23.q1k chr12 712 433 1069603 1069602 C 280 0.00 1252 reject_low 69 ALIGNMENT 29 Y12-15m23.q1k chr05 530 451 575227 575306 C 80 80.00 1252 reject_low 298 ALIGNMENT 257 Y12-15m23.q1k chr02 34 632 1764 2362 F 599 81.97 1252 reject_low 21 ALIGNMENT 0 Y12-15m23.q1k chr12 629 712 2087 2086 F 84 0.00 1252 reject_low 128 ALIGNMENT 0 Y12-15m23.q1k chr16 712 469 945963 945962 C 244 0.00 1252 reject_low 80 ALIGNMENT 0 Y12-15m23.q1k chr05 629 712 1694 1693 F 84 0.00 1252 reject_low 253 ALIGNMENT 115 Y12-15m23.q1k chr16 259 632 1482 1855 F 374 77.81 1252 reject_low 157 ALIGNMENT 181 Y12-15m23.q1k chr13 44 468 1667 2091 F 425 81.88 1252 reject_low 88 ALIGNMENT 0 Y12-15m23.q1k chr08 62 186 1650 1649 F 125 0.00 1252 reject_low 145 ALIGNMENT 254 Y12-15m23.q1k chr12 502 80 1076267 1076689 C 423 87.71 1252 reject_low 313 ALIGNMENT 0 Y12-15m23.q1k chr05 62 450 1481 1480 F 389 0.00 1252 reject_low 294 ALIGNMENT 0 Y12-15m23.q1k chr12 502 150 1069652 1069632 C 353 0.00 1252 reject_low 353 ALIGNMENT 38 Y12-15m23.q1k chr08 144 44 560417 560517 C 101 81.19 1252 reject_low 281 ALIGNMENT 0 Y12-15m23.q1k chr13 217 712 2091 2090 F 496 0.00 1252 reject_low 204 ALIGNMENT 34 Y12-15m23.q1k chr07 108 44 1088970 1089034 C 65 86.15 1252 reject_low 286 ALIGNMENT 0 Y12-15m23.q1k chr08 712 289 560418 560417 C 424 0.00 1252 reject_low 132 ALIGNMENT 0 Y12-15m23.q1k chr07 414 62 1089384 1089383 C 353 0.00 1252 reject_low 273 ALIGNMENT 0 Y12-15m23.q1k chr07 712 562 1088962 1088961 C 151 0.00 1252 reject_low 330,342 ALIGNMENT 0 Y12-15m23.q1k chr08 62 115 1651 1650 F 54 0.00 1252 reject_low 122 ALIGNMENT 0 Y12-15m23.q1k chr14 433 712 1998 1997 F 280 0.00 1252 reject_low 65 ALIGNMENT 0 Y12-15m23.q1k chr12 62 234 1694 1693 F 173 0.00 1252 reject_low 128 ALIGNMENT 87 Y12-15m23.q1k chr12 343 628 7337 7622 F 286 77.62 1252|9,0 reject_low 311 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1069691 1069690 C 80 0.00 1252 reject_low 314,320 ALIGNMENT 0 Y12-15m23.q1k chr16 414 62 946484 946483 C 353 0.00 1252 reject_low 224 ALIGNMENT 0 Y12-15m23.q1k chr02 433 712 2414 2413 F 280 0.00 1252 reject_low 70 ALIGNMENT 122 Y12-15m23.q1k chr08 163 401 1662 1900 F 239 84.52 1252 reject_low 169 ALIGNMENT 0 Y12-15m23.q1k chr16 562 712 1916 1915 F 151 0.00 1252 reject_low 334,346 ALIGNMENT 83 Y12-15m23.q1k chr12 216 44 1076265 1076437 C 173 83.82 1252 reject_low 324 ALIGNMENT 0 Y12-15m23.q1k chr16 325 712 1907 1906 F 388 0.00 1252 reject_low 108 ALIGNMENT 0 Y12-15m23.q1k chr08 712 361 560418 560417 C 352 0.00 1252 reject_low 75 ALIGNMENT 87 Y12-15m23.q1k chr14 343 628 1585 1870 F 286 77.62 1252 reject_low 197 ALIGNMENT 0 Y12-15m23.q1k chr16 633 712 1855 1854 F 80 0.00 1252 reject_low 157 ALIGNMENT 0 Y12-15m23.q1k chr08 150 712 1900 1899 F 563 0.00 1252 reject_low 293 ALIGNMENT 0 Y12-15m23.q1k chr04 712 469 1530065 1530064 C 244 0.00 1252 reject_low 94 ALIGNMENT 69 Y12-15m23.q1k chr12 343 628 1694 1979 F 286 75.52 1252 reject_low 238 ALIGNMENT 0 Y12-15m23.q1k chr16 62 367 1483 1482 F 306 0.00 1252 reject_low 220 ALIGNMENT 547 Y12-15m23.q1k chr05 44 1003 1470 2417 F 960 86.88 1252 ambiguous_tel 3 ALIGNMENT 25 Y12-15m23.q1k chr04 561 503 1530055 1530113 C 59 81.36 1252 reject_low 336,351 ALIGNMENT 127 Y12-15m23.q1k chr07 221 44 1089001 1089178 C 178 91.57 1252 reject_low 330 ALIGNMENT 546 Y12-15m23.q1k chr06 259 1003 892 1607 F 745 93.15 1252 ambiguous_tel 2 ALIGNMENT 0 Y12-15m23.q1k chr12 397 414 2216 7336 F 18 0.00 1252 reject_low 316 ALIGNMENT 254 Y12-15m23.q1k chr04 502 80 1530066 1530488 C 423 87.71 1252 reject_low 34 ALIGNMENT 0 Y12-15m23.q1k chr06 273 712 1265 1264 F 440 0.00 1252 reject_low 246 ALIGNMENT 0 Y12-15m23.q1k chr05 712 469 574894 574893 C 244 0.00 1252 reject_low 85 ALIGNMENT 215 Y12-15m23.q1k chr05 33 452 1639 2058 F 420 84.76 1252 reject_low 56 ALIGNMENT 0 Y12-15m23.q1k chr10 309 712 2365 2364 F 404 0.00 1252 reject_low 236 ALIGNMENT 37 Y12-15m23.q1k chr12 149 34 1069633 1069748 C 116 79.31 1252 reject_low 353 ALIGNMENT 40 Y12-15m23.q1k chr07 632 415 1089166 1089383 C 218 73.39 1252 reject_low 273 ALIGNMENT 189 Y12-15m23.q1k chr12 44 576 1683 2215 F 533 79.55 1252 reject_low 78 ALIGNMENT 0 Y12-15m23.q1k chr07 450 62 1089384 1089383 C 389 0.00 1252 reject_low 299 ALIGNMENT 40 Y12-15m23.q1k chr16 34 149 1761 1876 F 116 80.17 1252 reject_low 346 ALIGNMENT 0 Y12-15m23.q1k chr07 712 397 1088971 1088970 C 316 0.00 1252 reject_low 37 ALIGNMENT 75 Y12-15m23.q1k chr16 613 368 946249 946494 C 246 77.64 1252 reject_low 227 ALIGNMENT 209 Y12-15m23.q1k chr07 432 34 1088970 1089368 C 399 85.21 1252 reject_low 62 ALIGNMENT 0 Y12-15m23.q1k chr07 712 577 1088971 1088970 C 136 0.00 1252 reject_low 159 ALIGNMENT 0 Y12-15m23.q1k chr05 712 633 575090 575089 C 80 0.00 1252 reject_low 272 ALIGNMENT 67 Y12-15m23.q1k chr10 368 632 1669 1933 F 265 75.85 1252 reject_low 240 ALIGNMENT 0 Y12-15m23.q1k chr05 62 306 1481 1480 F 245 0.00 1252 reject_low 175 ALIGNMENT 0 Y12-15m23.q1k chr04 712 633 1530117 1530116 C 80 0.00 1252 reject_low 167 ALIGNMENT 0 Y12-15m23.q1k chr05 62 186 1469 1468 F 125 0.00 1252 reject_low 137 ALIGNMENT 211 Y12-15m23.q1k chr12 34 360 1889 2215 F 327 89.30 1252|0,9 reject_low 311 ALIGNMENT 82 Y12-15m23.q1k chr02 34 216 2232 2414 F 183 83.06 1252 reject_low 208 ALIGNMENT 127 Y12-15m23.q1k chr05 221 44 574924 575101 C 178 91.57 1252 reject_low 329 ALIGNMENT 86 Y12-15m23.q1k chr12 44 216 2043 2215 F 173 84.39 1252 reject_low 322 ALIGNMENT 0 Y12-15m23.q1k chr12 712 577 1069603 1069602 C 136 0.00 1252 reject_low 328 ALIGNMENT 44 Y12-15m23.q1k chr16 44 144 1807 1907 F 101 83.17 1252 reject_low 267 ALIGNMENT 121 Y12-15m23.q1k chr13 163 576 1678 2091 F 414 77.29 1252 reject_low 160 ALIGNMENT 0 Y12-15m23.q1k chr13 109 712 2091 2090 F 604 0.00 1252 reject_low 289 ALIGNMENT 0 Y12-15m23.q1k chr14 629 712 1870 1869 F 84 0.00 1252 reject_low 197 ALIGNMENT 0 Y12-15m23.q1k chr12 342 62 1076679 1076678 C 281 0.00 1252 reject_low 195 ALIGNMENT 0 Y12-15m23.q1k chr04 712 325 1530065 1530064 C 388 0.00 1252 reject_low 110 ALIGNMENT 213 Y12-15m23.q1k chr07 360 33 1088970 1089297 C 328 89.33 1252 reject_low 50 ALIGNMENT 0 Y12-15m23.q1k chr08 712 433 560418 560417 C 280 0.00 1252 reject_low 81 ALIGNMENT 194 Y12-15m23.q1k chr10 34 526 1875 2367 F 493 80.93 1252 reject_low 74 ALIGNMENT 0 Y12-15m23.q1k chr12 460 459 2207 7345 F 0 0.00 1252 reject_low 321 ALIGNMENT 0 Y12-15m23.q1k chr09 629 712 2090 2089 F 84 0.00 1252 reject_low 186 ALIGNMENT 0 Y12-15m23.q1k chr10 629 712 2073 2072 F 84 0.00 1252 reject_low 187 ALIGNMENT 79 Y12-15m23.q1k chr12 368 632 7326 7590 F 265 77.36 1252 reject_low 338 ALIGNMENT 34 Y12-15m23.q1k chr08 44 86 1867 1909 F 43 95.35 1252 reject_low 283 ALIGNMENT 0 Y12-15m23.q1k chr09 309 712 2382 2381 F 404 0.00 1252 reject_low 235 ALIGNMENT 94 Y12-15m23.q1k chr14 307 632 1585 1910 F 326 76.99 1252 reject_low 184 ALIGNMENT 0 Y12-15m23.q1k chr07 712 289 1088971 1088970 C 424 0.00 1252 reject_low 139 ALIGNMENT 124 Y12-15m23.q1k chr04 221 44 1530095 1530272 C 178 91.01 1252 reject_low 336 ALIGNMENT 87 Y12-15m23.q1k chr12 628 343 1069730 1070015 C 286 77.62 1252|0,9 reject_low 310 ALIGNMENT 40 Y12-15m23.q1k chr08 632 415 560613 560830 C 218 73.39 1252 reject_low 274 ALIGNMENT 156 Y12-15m23.q1k chr08 116 374 1651 1909 F 259 87.64 1252 reject_low 122 ALIGNMENT 0 Y12-15m23.q1k chr12 503 502 2214 7700 F 0 0.00 1252 reject_low 309 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 7590 7589 F 80 0.00 1252 reject_low 338 ALIGNMENT 243 Y12-15m23.q1k chr10 33 636 1694 2309 F 604 81.46 1252 reject_low 24 ALIGNMENT 0 Y12-15m23.q1k chr16 712 397 945963 945962 C 316 0.00 1252 reject_low 47 ALIGNMENT 87 Y12-15m23.q1k chr13 343 628 1678 1963 F 286 77.62 1252 reject_low 196 ALIGNMENT 115 Y12-15m23.q1k chr14 259 632 1573 1946 F 374 77.81 1252 reject_low 156 ALIGNMENT 184 Y12-15m23.q1k chr12 34 468 1781 2215 F 435 81.84 1252|0,9 reject_low 321 ALIGNMENT 0 Y12-15m23.q1k chr06 633 712 977 976 F 80 0.00 1252 reject_low 348 ALIGNMENT 75 Y12-15m23.q1k chr16 628 415 946270 946483 C 214 78.97 1252 reject_low 224 ALIGNMENT 49 Y12-15m23.q1k chr06 439 632 892 1085 F 194 75.77 1252 reject_low 254 ALIGNMENT 0 Y12-15m23.q1k chr12 712 325 1069603 1069602 C 388 0.00 1252 reject_low 111 ALIGNMENT 181 Y12-15m23.q1k chr07 468 44 1088970 1089394 C 425 81.88 1252 reject_low 86 ALIGNMENT 0 Y12-15m23.q1k chr16 712 633 946123 946122 C 80 0.00 1252 reject_low 124 ALIGNMENT 0 Y12-15m23.q1k chr08 712 562 560409 560408 C 151 0.00 1252 reject_low 326,352 ALIGNMENT 191 Y12-15m23.q1k chr05 116 634 1470 1988 F 519 79.77 1252 reject_low 72 ALIGNMENT 0 Y12-15m23.q1k chr05 342 62 575307 575306 C 281 0.00 1252 reject_low 193 ALIGNMENT 197 Y12-15m23.q1k chr12 34 432 1817 2215 F 399 84.21 1252|0,9 reject_low 318 ALIGNMENT 0 Y12-15m23.q1k chr12 145 367 2216 7325 F 223 0.00 1252 reject_low 338 ALIGNMENT 51 Y12-15m23.q1k chr09 415 613 1697 1895 F 199 75.88 1252 reject_low 255 ALIGNMENT 0 Y12-15m23.q1k chr09 345 712 2382 2381 F 368 0.00 1252 reject_low 170 ALIGNMENT 0 Y12-15m23.q1k chr07 712 633 1089023 1089022 C 80 0.00 1252 reject_low 153 ALIGNMENT 0 Y12-15m23.q1k chr12 162 62 1076679 1076678 C 101 0.00 1252 reject_low 166 ALIGNMENT 0 Y12-15m23.q1k chr16 145 712 1907 1906 F 568 0.00 1252 reject_low 267 ALIGNMENT 0 Y12-15m23.q1k chr05 635 712 1952 1951 F 78 0.00 1252 reject_low 127 ALIGNMENT 0 Y12-15m23.q1k chr08 62 79 1651 1650 F 18 0.00 1252 reject_low 131 ALIGNMENT 34 Y12-15m23.q1k chr13 44 108 2027 2091 F 65 86.15 1252 reject_low 289 ALIGNMENT 0 Y12-15m23.q1k chr16 306 62 946484 946483 C 245 0.00 1252 reject_low 213 ALIGNMENT 0 Y12-15m23.q1k chr05 633 712 1662 1661 F 80 0.00 1252 reject_low 294 ALIGNMENT 0 Y12-15m23.q1k chr16 712 145 945963 945962 C 568 0.00 1252 reject_low 268 ALIGNMENT 173 Y12-15m23.q1k chr09 33 452 1963 2382 F 420 81.43 1252 reject_low 92 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 2019 2018 F 80 0.00 1252 reject_low 222 ALIGNMENT 0 Y12-15m23.q1k chr06 491 712 1267 1266 F 222 0.00 1252 reject_low 117 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 7698 7697 F 80 0.00 1252 reject_low 322 ALIGNMENT 0 Y12-15m23.q1k chr09 62 79 1686 1685 F 18 0.00 1252 reject_low 32 ALIGNMENT 37 Y12-15m23.q1k chr08 149 34 560448 560563 C 116 79.31 1252 reject_low 352 ALIGNMENT 213 Y12-15m23.q1k chr12 33 360 7423 7750 F 328 89.33 1252 reject_low 51 ALIGNMENT 189 Y12-15m23.q1k chr08 360 33 560417 560744 C 328 86.89 1252 reject_low 75 ALIGNMENT 257 Y12-15m23.q1k chr07 502 80 1088972 1089394 C 423 87.94 1252 reject_low 27 ALIGNMENT 0 Y12-15m23.q1k chr14 562 712 2007 2006 F 151 0.00 1252 reject_low 333,345 ALIGNMENT 58 Y12-15m23.q1k chr05 44 200 1902 2058 F 157 80.25 1252 reject_low 252 ALIGNMENT 0 Y12-15m23.q1k chr02 629 712 2286 2285 F 84 0.00 1252 reject_low 18 ALIGNMENT 0 Y12-15m23.q1k chr09 629 712 1982 1981 F 84 0.00 1252 reject_low 188 ALIGNMENT 0 Y12-15m23.q1k chr10 527 712 2367 2366 F 186 0.00 1252 reject_low 74 ALIGNMENT 0 Y12-15m23.q1k chr04 712 109 1530065 1530064 C 604 0.00 1252 reject_low 284 ALIGNMENT 36 Y12-15m23.q1k chr06 558 632 903 977 F 75 82.67 1252 reject_low 348 ALIGNMENT 0 Y12-15m23.q1k chr05 62 414 1481 1480 F 353 0.00 1252 reject_low 253 ALIGNMENT 0 Y12-15m23.q1k chr09 629 712 1874 1873 F 84 0.00 1252 reject_low 269 ALIGNMENT 0 Y12-15m23.q1k chr14 217 712 1998 1997 F 496 0.00 1252 reject_low 205 ALIGNMENT 40 Y12-15m23.q1k chr04 632 415 1530260 1530477 C 218 73.39 1252 reject_low 271 ALIGNMENT 0 Y12-15m23.q1k chr08 62 414 1662 1661 F 353 0.00 1252 reject_low 234 ALIGNMENT 0 Y12-15m23.q1k chr16 234 62 946484 946483 C 173 0.00 1252 reject_low 123 ALIGNMENT 0 Y12-15m23.q1k chr08 79 62 560842 560841 C 18 0.00 1252 reject_low 45 ALIGNMENT 0 Y12-15m23.q1k chr02 325 712 2414 2413 F 388 0.00 1252 reject_low 136 ALIGNMENT 364 Y12-15m23.q1k chr04 1003 235 1529709 1530477 C 769 83.88 1252 ambiguous_tel 13 ALIGNMENT 0 Y12-15m23.q1k chr14 397 712 1998 1997 F 316 0.00 1252 reject_low 40 ALIGNMENT 0 Y12-15m23.q1k chr14 145 712 1998 1997 F 568 0.00 1252 reject_low 266 ALIGNMENT 44 Y12-15m23.q1k chr05 144 44 574893 574993 C 101 83.17 1252 reject_low 261 ALIGNMENT 160 Y12-15m23.q1k chr16 324 33 945962 946253 C 292 85.96 1252 reject_low 109 ALIGNMENT 0 Y12-15m23.q1k chr05 633 712 1806 1805 F 80 0.00 1252 reject_low 175 ALIGNMENT 0 Y12-15m23.q1k chr09 62 115 1686 1685 F 54 0.00 1252 reject_low 99 ALIGNMENT 0 Y12-15m23.q1k chr16 712 614 946250 946249 C 99 0.00 1252 reject_low 227 ALIGNMENT 0 Y12-15m23.q1k chr08 258 62 560843 560842 C 197 0.00 1252 reject_low 154 ALIGNMENT 124 Y12-15m23.q1k chr12 221 44 1069633 1069810 C 178 91.01 1252 reject_low 337 ALIGNMENT 31 Y12-15m23.q1k chr02 44 108 2350 2414 F 65 84.62 1252 reject_low 295 ALIGNMENT 0 Y12-15m23.q1k chr08 562 712 1952 1951 F 151 0.00 1252 reject_low 116 ALIGNMENT 24 Y12-15m23.q1k chr06 44 77 893 926 F 34 91.18 1252 reject_low 348 ALIGNMENT 29 Y12-15m23.q1k chr13 451 530 1678 1757 F 80 80.00 1252 reject_low 302 ALIGNMENT 0 Y12-15m23.q1k chr07 502 150 1089020 1089000 C 353 0.00 1252 reject_low 342 ALIGNMENT 0 Y12-15m23.q1k chr08 62 450 1662 1661 F 389 0.00 1252 reject_low 237 ALIGNMENT 0 Y12-15m23.q1k chr10 629 712 2037 2036 F 84 0.00 1252 reject_low 179 ALIGNMENT 0 Y12-15m23.q1k chr12 234 222 1070016 1076295 C 13 0.00 1252 reject_low 308 ALIGNMENT 0 Y12-15m23.q1k chr10 635 712 2223 2222 F 78 0.00 1252 reject_low 33 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 1894 1893 F 80 0.00 1252 reject_low 130 ALIGNMENT 157 Y12-15m23.q1k chr12 324 33 1076265 1076556 C 292 85.62 1252|9,0 reject_low 314 ALIGNMENT 0 Y12-15m23.q1k chr02 629 712 2178 2177 F 84 0.00 1252 reject_low 25 ALIGNMENT 0 Y12-15m23.q1k chr12 79 62 1076690 1076689 C 18 0.00 1252 reject_low 313 ALIGNMENT 0 Y12-15m23.q1k chr09 633 712 2202 2201 F 80 0.00 1252 reject_low 99 ALIGNMENT 0 Y12-15m23.q1k chr02 562 712 2423 2422 F 151 0.00 1252 reject_low 325,350 ALIGNMENT 0 Y12-15m23.q1k chr12 62 79 1683 1682 F 18 0.00 1252 ambiguous_tel 12 ALIGNMENT 130 Y12-15m23.q1k chr08 187 474 1650 1937 F 288 82.64 1252 reject_low 145 ALIGNMENT 34 Y12-15m23.q1k chr08 44 149 1795 1900 F 106 79.25 1252 reject_low 293 ALIGNMENT 0 Y12-15m23.q1k chr04 712 629 1530193 1530192 C 84 0.00 1252 reject_low 192 ALIGNMENT 173 Y12-15m23.q1k chr10 33 452 1946 2365 F 420 81.43 1252 reject_low 93 ALIGNMENT 0 Y12-15m23.q1k chr12 712 577 1076266 1076265 C 136 0.00 1252 reject_low 166 ALIGNMENT 0 Y12-15m23.q1k chr06 62 402 892 891 F 341 0.00 1252 reject_low 190 ALIGNMENT 0 Y12-15m23.q1k chr10 62 258 1668 1667 F 197 0.00 1252 reject_low 179 ALIGNMENT 121 Y12-15m23.q1k chr07 576 163 1088970 1089383 C 414 77.29 1252 reject_low 159 ALIGNMENT 123 Y12-15m23.q1k chr05 187 632 1469 1914 F 446 76.68 1252 reject_low 137 ALIGNMENT 118 Y12-15m23.q1k chr05 288 33 574893 575148 C 256 83.20 1252 reject_low 138 ALIGNMENT 0 Y12-15m23.q1k chr12 712 109 1069603 1069602 C 604 0.00 1252 reject_low 288 ALIGNMENT 158 Y12-15m23.q1k chr10 187 628 1668 2109 F 442 79.41 1252 reject_low 114 ALIGNMENT 0 Y12-15m23.q1k chr16 629 712 1779 1778 F 84 0.00 1252 reject_low 198 ALIGNMENT 0 Y12-15m23.q1k chr16 289 712 1907 1906 F 424 0.00 1252 reject_low 143 ALIGNMENT 0 Y12-15m23.q1k chr08 306 62 560831 560830 C 245 0.00 1252 reject_low 182 ALIGNMENT 367 Y12-15m23.q1k chr05 1003 235 574538 575306 C 769 84.01 1252 ambiguous_tel 8 ALIGNMENT 34 Y12-15m23.q1k chr16 44 108 1843 1907 F 65 86.15 1252 reject_low 291 ALIGNMENT 0 Y12-15m23.q1k chr12 258 217 1070028 1076264 C 42 0.00 1252 reject_low 324 ALIGNMENT 97 Y12-15m23.q1k chr12 632 307 1076353 1076678 C 326 77.30 1252 reject_low 177 ALIGNMENT 0 Y12-15m23.q1k chr12 502 62 1076315 1076314 C 441 0.00 1252 reject_low 306 ALIGNMENT 0 Y12-15m23.q1k chr13 222 502 2061 2041 F 281 0.00 1252 reject_low 332 ALIGNMENT 0 Y12-15m23.q1k chr16 712 289 945963 945962 C 424 0.00 1252 reject_low 144 ALIGNMENT 0 Y12-15m23.q1k chr05 712 562 574885 574884 C 151 0.00 1252 reject_low 329,341 ALIGNMENT 0 Y12-15m23.q1k chr14 62 234 1585 1584 F 173 0.00 1252 ambiguous_tel 10 ALIGNMENT 0 Y12-15m23.q1k chr05 712 397 574894 574893 C 316 0.00 1252 reject_low 36 ALIGNMENT 0 Y12-15m23.q1k chr04 502 222 1530114 1530094 C 281 0.00 1252 reject_low 336 ALIGNMENT 367 Y12-15m23.q1k chr14 235 1003 1585 2353 F 769 84.01 1252 ambiguous_tel 10 ALIGNMENT 0 Y12-15m23.q1k chr12 367 62 1076690 1076689 C 306 0.00 1252 reject_low 217 ALIGNMENT 0 Y12-15m23.q1k chr12 469 712 7750 7749 F 244 0.00 1252 reject_low 87 ALIGNMENT 0 Y12-15m23.q1k chr13 633 712 2039 2038 F 80 0.00 1252 reject_low 155 ALIGNMENT 142 Y12-15m23.q1k chr12 259 632 1682 2055 F 374 80.21 1252 reject_low 129 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 2362 2361 F 80 0.00 1252 reject_low 21 ALIGNMENT 0 Y12-15m23.q1k chr12 629 712 1907 1906 F 84 0.00 1252 reject_low 229 ALIGNMENT 0 Y12-15m23.q1k chr08 342 62 560831 560830 C 281 0.00 1252 reject_low 223 ALIGNMENT 72 Y12-15m23.q1k chr12 415 628 1694 1907 F 214 78.50 1252 reject_low 229 ALIGNMENT 0 Y12-15m23.q1k chr12 315 316 1070007 1076273 C 0 0.00 1252 reject_low 314 ALIGNMENT 0 Y12-15m23.q1k chr16 712 629 946199 946198 C 84 0.00 1252 reject_low 231 ALIGNMENT 67 Y12-15m23.q1k chr08 415 632 1662 1879 F 218 77.52 1252 reject_low 234 ALIGNMENT 0 Y12-15m23.q1k chr05 712 629 575022 575021 C 84 0.00 1252 reject_low 193 ALIGNMENT 0 Y12-15m23.q1k chr08 712 397 560418 560417 C 316 0.00 1252 reject_low 48 ALIGNMENT 0 Y12-15m23.q1k chr12 367 145 1070027 1076264 C 223 0.00 1252 reject_low 339 ALIGNMENT 0 Y12-15m23.q1k chr12 62 186 1682 1681 F 125 0.00 1252 reject_low 164 ALIGNMENT 234 Y12-15m23.q1k chr12 396 34 1076265 1076627 C 363 89.26 1252 reject_low 312 ALIGNMENT 0 Y12-15m23.q1k chr14 62 306 1585 1584 F 245 0.00 1252 reject_low 184 ALIGNMENT 25 Y12-15m23.q1k chr12 561 503 1076256 1076314 C 59 81.36 1252 reject_low 306 ALIGNMENT 0 Y12-15m23.q1k chr10 614 712 1878 1877 F 99 0.00 1252 reject_low 256 ALIGNMENT 83 Y12-15m23.q1k chr06 403 634 892 1123 F 232 79.31 1252 reject_low 190 ALIGNMENT 0 Y12-15m23.q1k chr05 162 62 575307 575306 C 101 0.00 1252 reject_low 158 ALIGNMENT 209 Y12-15m23.q1k chr13 34 432 1693 2091 F 399 85.21 1252 reject_low 64 ALIGNMENT 0 Y12-15m23.q1k chr07 258 62 1089396 1089395 C 197 0.00 1252 reject_low 153 ALIGNMENT 0 Y12-15m23.q1k chr05 309 712 2058 2057 F 404 0.00 1252 reject_low 172 ALIGNMENT 0 Y12-15m23.q1k chr16 712 577 945963 945962 C 136 0.00 1252 reject_low 77 ALIGNMENT 222 Y12-15m23.q1k chr12 44 396 1863 2215 F 353 88.67 1252 reject_low 316 ALIGNMENT 0 Y12-15m23.q1k chr05 712 633 575054 575053 C 80 0.00 1252 reject_low 215 ALIGNMENT 0 Y12-15m23.q1k chr02 289 712 2414 2413 F 424 0.00 1252 reject_low 134 ALIGNMENT 0 Y12-15m23.q1k chr16 150 502 1877 1857 F 353 0.00 1252 reject_low 346 ALIGNMENT 421 Y12-15m23.q1k chr12 80 1003 1683 2570 F 924 84.31 1252 ambiguous_tel 12 ALIGNMENT 29 Y12-15m23.q1k chr12 530 451 1076599 1076678 C 80 80.00 1252 reject_low 301 ALIGNMENT 181 Y12-15m23.q1k chr12 44 468 7326 7750 F 425 81.88 1252 reject_low 87 ALIGNMENT 0 Y12-15m23.q1k chr07 712 217 1088971 1088970 C 496 0.00 1252 reject_low 202 ALIGNMENT 71 Y12-15m23.q1k chr09 34 308 2108 2382 F 275 76.36 1252 reject_low 235 ALIGNMENT 0 Y12-15m23.q1k chr14 222 502 1968 1948 F 281 0.00 1252 reject_low 333 ALIGNMENT 0 Y12-15m23.q1k chr02 633 712 2326 2325 F 80 0.00 1252 reject_low 22 ALIGNMENT 40 Y12-15m23.q1k chr13 34 149 1945 2060 F 116 80.17 1252 reject_low 344 ALIGNMENT 0 Y12-15m23.q1k chr16 577 712 1907 1906 F 136 0.00 1252 reject_low 162 ALIGNMENT 40 Y12-15m23.q1k chr14 34 149 1852 1967 F 116 80.17 1252 reject_low 345 ALIGNMENT 0 Y12-15m23.q1k chr04 712 633 1530225 1530224 C 80 0.00 1252 reject_low 214 ALIGNMENT 115 Y12-15m23.q1k chr05 632 259 574945 575318 C 374 77.81 1252 reject_low 152 ALIGNMENT 0 Y12-15m23.q1k chr12 577 712 7750 7749 F 136 0.00 1252 reject_low 327 ALIGNMENT 252 Y12-15m23.q1k chr02 33 628 1583 2178 F 596 81.71 1252 reject_low 25 ALIGNMENT 151 Y12-15m23.q1k chr06 44 376 929 1261 F 333 82.88 1252 reject_low 125 ALIGNMENT 0 Y12-15m23.q1k chr04 712 531 1530399 1530398 C 182 0.00 1252 reject_low 297 ALIGNMENT 64 Y12-15m23.q1k chr06 44 236 1073 1265 F 193 78.76 1252 reject_low 247 ALIGNMENT 44 Y12-15m23.q1k chr14 44 144 1898 1998 F 101 83.17 1252 reject_low 266 ALIGNMENT 0 Y12-15m23.q1k chr16 712 629 946271 946270 C 84 0.00 1252 reject_low 224 ALIGNMENT 178 Y12-15m23.q1k chr12 468 44 1076265 1076689 C 425 81.65 1252|9,0 reject_low 323 ALIGNMENT 40 Y12-15m23.q1k chr12 34 149 2069 2184 F 116 80.17 1252 reject_low 340 ALIGNMENT 0 Y12-15m23.q1k chr06 345 712 1265 1264 F 368 0.00 1252 reject_low 174 ALIGNMENT 0 Y12-15m23.q1k chr07 712 433 1088971 1088970 C 280 0.00 1252 reject_low 62 ALIGNMENT 144 Y12-15m23.q1k chr12 235 628 1694 2087 F 394 79.70 1252 reject_low 128 ALIGNMENT 25 Y12-15m23.q1k chr12 561 503 1069593 1069651 C 59 81.36 1252 reject_low 313,337,353 ALIGNMENT 0 Y12-15m23.q1k chr12 145 162 2216 7336 F 18 0.00 1252 reject_low 327 ALIGNMENT 0 Y12-15m23.q1k chr10 491 712 2367 2366 F 222 0.00 1252 reject_low 120 ALIGNMENT 0 Y12-15m23.q1k chr04 234 62 1530478 1530477 C 173 0.00 1252 ambiguous_tel 13 ALIGNMENT 40 Y12-15m23.q1k chr12 415 632 7337 7554 F 218 73.39 1252|9,0 reject_low 316,318,340 ALIGNMENT 0 Y12-15m23.q1k chr16 712 633 946159 946158 C 80 0.00 1252 reject_low 213 ALIGNMENT 0 Y12-15m23.q1k chr14 109 712 1998 1997 F 604 0.00 1252 reject_low 290 ALIGNMENT 0 Y12-15m23.q1k chr12 109 450 2216 7336 F 342 0.00 1252 reject_low 354 ALIGNMENT 0 Y12-15m23.q1k chr12 712 531 1069937 1069936 C 182 0.00 1252 reject_low 323,349,355 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1069799 1069798 C 80 0.00 1252 reject_low 312,317 ALIGNMENT 118 Y12-15m23.q1k chr07 288 33 1088970 1089225 C 256 83.20 1252 reject_low 139 ALIGNMENT 181 Y12-15m23.q1k chr16 44 468 1483 1907 F 425 81.88 1252 reject_low 90 ALIGNMENT 42 Y12-15m23.q1k chr09 451 628 1697 1874 F 178 75.28 1252 reject_low 269 ALIGNMENT 0 Y12-15m23.q1k chr05 712 325 574894 574893 C 388 0.00 1252 reject_low 103 ALIGNMENT 86 Y12-15m23.q1k chr14 44 216 1826 1998 F 173 84.39 1252 reject_low 205 ALIGNMENT 0 Y12-15m23.q1k chr12 712 361 1069603 1069602 C 352 0.00 1252 reject_low 59 ALIGNMENT 0 Y12-15m23.q1k chr08 637 712 1847 1846 F 76 0.00 1252 reject_low 237 ALIGNMENT 0 Y12-15m23.q1k chr12 217 712 7750 7749 F 496 0.00 1252 reject_low 203 ALIGNMENT 37 Y12-15m23.q1k chr12 149 34 1076296 1076411 C 116 79.31 1252 reject_low 349 ALIGNMENT 240 Y12-15m23.q1k chr10 80 634 1669 2223 F 555 81.98 1252 reject_low 33 ALIGNMENT 254 Y12-15m23.q1k chr12 502 80 1069604 1070026 C 423 87.71 1252 reject_low 35 ALIGNMENT 0 Y12-15m23.q1k chr04 502 150 1530114 1530094 C 353 0.00 1252 reject_low 351 ALIGNMENT 79 Y12-15m23.q1k chr14 368 632 1574 1838 F 265 77.36 1252 reject_low 219 ALIGNMENT 44 Y12-15m23.q1k chr12 44 144 2115 2215 F 101 83.17 1252 reject_low 327,338 ALIGNMENT 240 Y12-15m23.q1k chr09 80 634 1686 2240 F 555 81.98 1252 reject_low 32 ALIGNMENT 127 Y12-15m23.q1k chr12 44 221 2007 2184 F 178 91.57 1252 reject_low 307 ALIGNMENT 0 Y12-15m23.q1k chr16 712 109 945963 945962 C 604 0.00 1252 reject_low 292 ALIGNMENT 0 Y12-15m23.q1k chr06 78 557 927 902 F 480 0.00 1252 reject_low 348 ALIGNMENT 187 Y12-15m23.q1k chr16 468 34 945962 946396 C 435 82.07 1252 reject_low 80 ALIGNMENT 0 Y12-15m23.q1k chr16 222 502 1877 1857 F 281 0.00 1252 reject_low 334 ALIGNMENT 40 Y12-15m23.q1k chr08 44 122 1831 1909 F 79 86.08 1252 reject_low 279 ALIGNMENT 364 Y12-15m23.q1k chr12 1003 235 1075910 1076678 C 769 83.88 1252 ambiguous_tel 14 ALIGNMENT 0 Y12-15m23.q1k chr08 582 712 1936 1935 F 131 0.00 1252 reject_low 173 ALIGNMENT 293 Y12-15m23.q1k chr02 34 632 1548 2146 F 599 83.97 1252 reject_low 19 ALIGNMENT 0 Y12-15m23.q1k chr06 635 712 1159 1158 F 78 0.00 1252 reject_low 151 ALIGNMENT 118 Y12-15m23.q1k chr14 33 288 1743 1998 F 256 83.20 1252 reject_low 142 ALIGNMENT 0 Y12-15m23.q1k chr16 712 633 946051 946050 C 80 0.00 1252 reject_low 150 ALIGNMENT 85 Y12-15m23.q1k chr10 307 632 1680 2005 F 326 76.07 1252 reject_low 200 ALIGNMENT 0 Y12-15m23.q1k chr07 712 109 1088971 1088970 C 604 0.00 1252 reject_low 286 ALIGNMENT 96 Y12-15m23.q1k chr09 235 628 1697 2090 F 394 75.63 1252 reject_low 186 ALIGNMENT 0 Y12-15m23.q1k chr12 109 712 7750 7749 F 604 0.00 1252 reject_low 287 ALIGNMENT 0 Y12-15m23.q1k chr04 712 397 1530065 1530064 C 316 0.00 1252 reject_low 42 ALIGNMENT 0 Y12-15m23.q1k chr16 712 562 945954 945953 C 151 0.00 1252 reject_low 335,347 ALIGNMENT 94 Y12-15m23.q1k chr08 576 163 560417 560830 C 414 75.12 1252 reject_low 191 ALIGNMENT 0 Y12-15m23.q1k chr04 79 62 1530489 1530488 C 18 0.00 1252 reject_low 34 ALIGNMENT 81 Y12-15m23.q1k chr08 628 368 560581 560841 C 261 77.78 1252 reject_low 210 ALIGNMENT 0 Y12-15m23.q1k chr12 614 712 1928 1927 F 99 0.00 1252 reject_low 232 ALIGNMENT 0 Y12-15m23.q1k chr07 712 145 1088971 1088970 C 568 0.00 1252 reject_low 262 ALIGNMENT 154 Y12-15m23.q1k chr09 44 490 1938 2384 F 447 79.19 1252 reject_low 119 ALIGNMENT 118 Y12-15m23.q1k chr12 33 288 7495 7750 F 256 83.20 1252 reject_low 140 ALIGNMENT 0 Y12-15m23.q1k chr12 414 397 1070016 1076264 C 18 0.00 1252 reject_low 312 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1069763 1069762 C 80 0.00 1252 reject_low 339 ALIGNMENT 209 Y12-15m23.q1k chr16 34 432 1509 1907 F 399 85.21 1252 reject_low 66 ALIGNMENT 0 Y12-15m23.q1k chr07 712 503 1088973 1088972 C 210 0.00 1252 reject_low 27 ALIGNMENT 0 Y12-15m23.q1k chr12 316 315 2207 7345 F 0 0.00 1252 reject_low 315 ALIGNMENT 86 Y12-15m23.q1k chr16 44 216 1735 1907 F 173 84.39 1252 reject_low 206 ALIGNMENT 0 Y12-15m23.q1k chr02 629 712 1746 1745 F 84 0.00 1252 reject_low 241 ALIGNMENT 237 Y12-15m23.q1k chr05 396 34 574893 575255 C 363 89.53 1252 reject_low 36 ALIGNMENT 185 Y12-15m23.q1k chr08 34 293 1677 1936 F 260 91.54 1252 reject_low 76 ALIGNMENT 44 Y12-15m23.q1k chr12 144 44 1076265 1076365 C 101 83.17 1252 reject_low 328,339 ALIGNMENT 133 Y12-15m23.q1k chr02 259 632 1485 1858 F 374 79.41 1252 reject_low 135 ALIGNMENT 0 Y12-15m23.q1k chr02 62 306 1497 1496 F 245 0.00 1252 reject_low 226 ALIGNMENT 0 Y12-15m23.q1k chr05 712 633 574946 574945 C 80 0.00 1252 reject_low 152 ALIGNMENT 0 Y12-15m23.q1k chr12 712 397 1069603 1069602 C 316 0.00 1252 reject_low 43 ALIGNMENT 0 Y12-15m23.q1k chr12 62 414 1694 1693 F 353 0.00 1252 reject_low 229 ALIGNMENT 83 Y12-15m23.q1k chr04 216 44 1530064 1530236 C 173 83.82 1252 reject_low 211 ALIGNMENT 0 Y12-15m23.q1k chr04 712 633 1530261 1530260 C 80 0.00 1252 reject_low 271 ALIGNMENT 0 Y12-15m23.q1k chr13 150 502 2061 2041 F 353 0.00 1252 reject_low 344 ALIGNMENT 72 Y12-15m23.q1k chr02 343 613 1497 1767 F 271 76.38 1252 reject_low 233 ALIGNMENT 118 Y12-15m23.q1k chr12 33 288 1960 2215 F 256 83.20 1252 reject_low 319 ALIGNMENT 0 Y12-15m23.q1k chr05 62 162 1481 1480 F 101 0.00 1252 reject_low 127 ALIGNMENT 0 Y12-15m23.q1k chr02 629 712 2250 2249 F 84 0.00 1252 reject_low 17 ALIGNMENT 94 Y12-15m23.q1k chr12 307 632 7337 7662 F 326 76.99 1252|9,0 reject_low 315,319 ALIGNMENT 0 Y12-15m23.q1k chr10 345 712 2365 2364 F 368 0.00 1252 reject_low 171 ALIGNMENT 0 Y12-15m23.q1k chr09 377 712 2378 2377 F 336 0.00 1252 reject_low 83 ALIGNMENT 121 Y12-15m23.q1k chr12 163 576 7337 7750 F 414 77.29 1252 reject_low 327 ALIGNMENT 0 Y12-15m23.q1k chr08 62 342 1662 1661 F 281 0.00 1252 ambiguous_tel 15 ALIGNMENT 156 Y12-15m23.q1k chr02 163 632 1497 1966 F 470 78.51 1252 reject_low 115 ALIGNMENT 205 Y12-15m23.q1k chr05 33 526 1567 2060 F 494 81.58 1252 reject_low 67 ALIGNMENT 0 Y12-15m23.q1k chr14 62 79 1574 1573 F 18 0.00 1252 reject_low 30 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 2127 2126 F 80 0.00 1252 reject_low 164 ALIGNMENT 0 Y12-15m23.q1k chr02 62 115 1486 1485 F 54 0.00 1252 reject_low 60 ALIGNMENT 0 Y12-15m23.q1k chr02 109 712 2414 2413 F 604 0.00 1252 reject_low 295 ALIGNMENT 44 Y12-15m23.q1k chr07 144 44 1088970 1089070 C 101 83.17 1252 reject_low 262 ALIGNMENT 0 Y12-15m23.q1k chr08 712 109 560418 560417 C 604 0.00 1252 reject_low 296 ALIGNMENT 0 Y12-15m23.q1k chr06 527 712 1267 1266 F 186 0.00 1252 reject_low 101 ALIGNMENT 81 Y12-15m23.q1k chr05 343 622 1481 1760 F 280 77.14 1252 reject_low 221 ALIGNMENT 0 Y12-15m23.q1k chr08 207 712 1921 1920 F 506 0.00 1252 reject_low 245 ALIGNMENT 0 Y12-15m23.q1k chr04 712 503 1530067 1530066 C 210 0.00 1252 reject_low 34 ALIGNMENT 63 Y12-15m23.q1k chr08 34 206 1749 1921 F 173 80.35 1252 reject_low 245 ALIGNMENT 72 Y12-15m23.q1k chr12 368 613 1683 1928 F 246 77.24 1252 reject_low 232 ALIGNMENT 0 Y12-15m23.q1k chr05 201 712 2058 2057 F 512 0.00 1252 reject_low 252 ALIGNMENT 0 Y12-15m23.q1k chr02 397 712 2414 2413 F 316 0.00 1252 reject_low 82 ALIGNMENT 44 Y12-15m23.q1k chr12 144 44 1069602 1069702 C 101 83.17 1252 reject_low 264 ALIGNMENT 209 Y12-15m23.q1k chr05 432 34 574893 575291 C 399 85.21 1252 reject_low 61 ALIGNMENT 0 Y12-15m23.q1k chr14 633 712 1946 1945 F 80 0.00 1252 reject_low 156 ALIGNMENT 0 Y12-15m23.q1k chr04 712 217 1530065 1530064 C 496 0.00 1252 reject_low 211 ALIGNMENT 173 Y12-15m23.q1k chr10 33 376 2018 2361 F 344 84.59 1252 reject_low 84 ALIGNMENT 31 Y12-15m23.q1k chr05 451 632 1481 1662 F 182 73.08 1252 reject_low 294 ALIGNMENT 0 Y12-15m23.q1k chr02 361 712 2414 2413 F 352 0.00 1252 reject_low 97 ALIGNMENT 118 Y12-15m23.q1k chr12 576 163 1076265 1076678 C 414 77.05 1252 reject_low 166 ALIGNMENT 0 Y12-15m23.q1k chr04 306 62 1530478 1530477 C 245 0.00 1252 reject_low 176 ALIGNMENT 67 Y12-15m23.q1k chr09 368 632 1686 1950 F 265 75.85 1252 reject_low 239 ALIGNMENT 0 Y12-15m23.q1k chr12 502 222 1069652 1069632 C 281 0.00 1252 reject_low 337 ALIGNMENT 0 Y12-15m23.q1k chr09 62 234 1697 1696 F 173 0.00 1252 reject_low 186 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 2163 2162 F 80 0.00 1252 reject_low 96 ALIGNMENT 0 Y12-15m23.q1k chr13 145 712 2091 2090 F 568 0.00 1252 reject_low 265 ALIGNMENT 159 Y12-15m23.q1k chr06 80 452 893 1265 F 373 81.77 1252 reject_low 118 ALIGNMENT 86 Y12-15m23.q1k chr12 44 216 7578 7750 F 173 84.39 1252 reject_low 203 ALIGNMENT 0 Y12-15m23.q1k chr13 325 712 2091 2090 F 388 0.00 1252 reject_low 106 ALIGNMENT 79 Y12-15m23.q1k chr05 632 368 575053 575317 C 265 77.36 1252 reject_low 215 ALIGNMENT 0 Y12-15m23.q1k chr08 367 712 1937 1936 F 346 0.00 1252 reject_low 131 ALIGNMENT 0 Y12-15m23.q1k chr12 423 424 1070007 1076273 C 0 0.00 1252 reject_low 317 ALIGNMENT 0 Y12-15m23.q1k chr04 712 577 1530065 1530064 C 136 0.00 1252 reject_low 165 ALIGNMENT 206 Y12-15m23.q1k chr12 432 34 1069602 1070000 C 399 84.96 1252 reject_low 69 ALIGNMENT 0 Y12-15m23.q1k chr07 712 633 1089131 1089130 C 80 0.00 1252 reject_low 216 ALIGNMENT 0 Y12-15m23.q1k chr08 712 145 560418 560417 C 568 0.00 1252 reject_low 281 ALIGNMENT 0 Y12-15m23.q1k chr04 162 62 1530478 1530477 C 101 0.00 1252 reject_low 165 ALIGNMENT 0 Y12-15m23.q1k chr16 109 712 1907 1906 F 604 0.00 1252 reject_low 291 ALIGNMENT 40 Y12-15m23.q1k chr12 632 415 1076461 1076678 C 218 73.39 1252 reject_low 275 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 1875 1874 F 80 0.00 1252 reject_low 258 ALIGNMENT 0 Y12-15m23.q1k chr02 503 712 2412 2411 F 210 0.00 1252 reject_low 20 ALIGNMENT 115 Y12-15m23.q1k chr12 259 632 7325 7698 F 374 77.81 1252 reject_low 322 ALIGNMENT 0 Y12-15m23.q1k chr07 712 629 1089099 1089098 C 84 0.00 1252 reject_low 194 ALIGNMENT 0 Y12-15m23.q1k chr12 62 342 1694 1693 F 281 0.00 1252 reject_low 238 ALIGNMENT 0 Y12-15m23.q1k chr16 633 712 1711 1710 F 80 0.00 1252 reject_low 278 ALIGNMENT 234 Y12-15m23.q1k chr12 396 34 1069602 1069964 C 363 89.26 1252 reject_low 43 ALIGNMENT 65 Y12-15m23.q1k chr06 187 258 892 963 F 72 97.22 1252 reject_low 250 ALIGNMENT 127 Y12-15m23.q1k chr16 44 221 1699 1876 F 178 91.57 1252 reject_low 334 ALIGNMENT 0 Y12-15m23.q1k chr07 712 469 1088971 1088970 C 244 0.00 1252 reject_low 86 ALIGNMENT 219 Y12-15m23.q1k chr08 396 34 560417 560779 C 363 87.88 1252 reject_low 48 ALIGNMENT 0 Y12-15m23.q1k chr12 62 450 1694 1693 F 389 0.00 1252 reject_low 258 ALIGNMENT 0 Y12-15m23.q1k chr08 162 62 560831 560830 C 101 0.00 1252 reject_low 191 ALIGNMENT 0 Y12-15m23.q1k chr09 629 712 2054 2053 F 84 0.00 1252 reject_low 178 ALIGNMENT 0 Y12-15m23.q1k chr02 150 502 2384 2364 F 353 0.00 1252 reject_low 350 ALIGNMENT 115 Y12-15m23.q1k chr13 259 632 1666 2039 F 374 77.81 1252 reject_low 155 ALIGNMENT 185 Y12-15m23.q1k chr08 432 34 560417 560815 C 399 83.21 1252 reject_low 81 ALIGNMENT 200 Y12-15m23.q1k chr16 432 34 945962 946360 C 399 84.46 1252 reject_low 71 ALIGNMENT 0 Y12-15m23.q1k chr12 222 502 7720 7700 F 281 0.00 1252 reject_low 331 ALIGNMENT 115 Y12-15m23.q1k chr12 288 33 1069602 1069857 C 256 82.81 1252 reject_low 147 ALIGNMENT 76 Y12-15m23.q1k chr05 44 236 1866 2058 F 193 80.83 1252 reject_low 228 ALIGNMENT 0 Y12-15m23.q1k chr05 62 342 1481 1480 F 281 0.00 1252 reject_low 221 ALIGNMENT 99 Y12-15m23.q1k chr10 259 628 1668 2037 F 370 76.49 1252 reject_low 179 ALIGNMENT 169 Y12-15m23.q1k chr02 34 360 2088 2414 F 327 85.02 1252 reject_low 97 ALIGNMENT 171 Y12-15m23.q1k chr02 44 576 1882 2414 F 533 78.42 1252 reject_low 98 ALIGNMENT 187 Y12-15m23.q1k chr02 34 468 1980 2414 F 435 82.07 1252 reject_low 79 ALIGNMENT 113 Y12-15m23.q1k chr05 44 308 1794 2058 F 265 81.89 1252 reject_low 172 ALIGNMENT 118 Y12-15m23.q1k chr13 33 288 1836 2091 F 256 83.20 1252 reject_low 141 ALIGNMENT 25 Y12-15m23.q1k chr16 561 503 945953 946011 C 59 81.36 1252 reject_low 335,347 ALIGNMENT 253 Y12-15m23.q1k chr02 33 632 1727 2326 F 600 81.67 1252 reject_low 22 ALIGNMENT 213 Y12-15m23.q1k chr05 360 33 574893 575220 C 328 89.33 1252 reject_low 49 ALIGNMENT 106 Y12-15m23.q1k chr08 307 581 1662 1936 F 275 80.36 1252 reject_low 173 ALIGNMENT 118 Y12-15m23.q1k chr04 576 163 1530064 1530477 C 414 77.05 1252 reject_low 165 ALIGNMENT 0 Y12-15m23.q1k chr16 712 325 945963 945962 C 388 0.00 1252 reject_low 109 ALIGNMENT 0 Y12-15m23.q1k chr09 491 712 2384 2383 F 222 0.00 1252 reject_low 119 ALIGNMENT 79 Y12-15m23.q1k chr12 632 368 1069762 1070026 C 265 77.36 1252 reject_low 339 ALIGNMENT 0 Y12-15m23.q1k chr12 712 633 1069655 1069654 C 80 0.00 1252 reject_low 324 ALIGNMENT 0 Y12-15m23.q1k chr05 273 712 2058 2057 F 440 0.00 1252 reject_low 244 ALIGNMENT 0 Y12-15m23.q1k chr08 712 633 560470 560469 C 80 0.00 1252 reject_low 154 ALIGNMENT 0 Y12-15m23.q1k chr12 62 502 2166 2165 F 441 0.00 1252 reject_low 305 ALIGNMENT 51 Y12-15m23.q1k chr10 415 613 1680 1878 F 199 75.88 1252 reject_low 256 ALIGNMENT 0 Y12-15m23.q1k chr16 62 234 1494 1493 F 173 0.00 1252 ambiguous_tel 11 ALIGNMENT 42 Y12-15m23.q1k chr10 451 628 1680 1857 F 178 75.28 1252 reject_low 270 ALIGNMENT 0 Y12-15m23.q1k chr02 623 712 1668 1667 F 90 0.00 1252 reject_low 282 ALIGNMENT 0 Y12-15m23.q1k chr14 62 342 1585 1584 F 281 0.00 1252 reject_low 197 ALIGNMENT 0 Y12-15m23.q1k chr16 62 162 1494 1493 F 101 0.00 1252 reject_low 162 ALIGNMENT 0 Y12-15m23.q1k chr04 342 62 1530478 1530477 C 281 0.00 1252 reject_low 192 ALIGNMENT 0 Y12-15m23.q1k chr05 345 712 2058 2057 F 368 0.00 1252 reject_low 126 ALIGNMENT 25 Y12-15m23.q1k chr05 561 503 574884 574942 C 59 81.36 1252 reject_low 329,341 ALIGNMENT 51 Y12-15m23.q1k chr05 415 628 1481 1694 F 214 75.23 1252 reject_low 253 ALIGNMENT 0 Y12-15m23.q1k chr08 62 258 1650 1649 F 197 0.00 1252 reject_low 116 ALIGNMENT 0 Y12-15m23.q1k chr12 633 712 2055 2054 F 80 0.00 1252 reject_low 129 ALIGNMENT 0 Y12-15m23.q1k chr12 234 62 1076679 1076678 C 173 0.00 1252 ambiguous_tel 14 ALIGNMENT 0 Y12-15m23.q1k chr04 712 361 1530065 1530064 C 352 0.00 1252 reject_low 58 ALIGNMENT 118 Y12-15m23.q1k chr12 576 163 1069602 1070015 C 414 77.05 1252 reject_low 328 ALIGNMENT 0 Y12-15m23.q1k chr16 633 712 1747 1746 F 80 0.00 1252 reject_low 220 ALIGNMENT 0 Y12-15m23.q1k chr16 62 342 1494 1493 F 281 0.00 1252 reject_low 198 ALIGNMENT 0 Y12-15m23.q1k chr12 306 289 1070016 1076264 C 18 0.00 1252 reject_low 320 ALIGNMENT 0 Y12-15m23.q1k chr14 503 712 1996 1995 F 210 0.00 1252 reject_low 30 ALIGNMENT 257 Y12-15m23.q1k chr13 80 502 1667 2089 F 423 87.94 1252 reject_low 29 ALIGNMENT 206 Y12-15m23.q1k chr02 116 634 1486 2004 F 519 80.73 1252 reject_low 60 ALIGNMENT 0 Y12-15m23.q1k chr12 712 629 1076394 1076393 C 84 0.00 1252 reject_low 195 ALIGNMENT 0 Y12-15m23.q1k chr14 577 712 1998 1997 F 136 0.00 1252 reject_low 161 ALIGNMENT 323 Y12-15m23.q1k chr12 33 502 1744 2213 F 470 90.64 1252 reject_low 309 ALIGNMENT 0 Y12-15m23.q1k chr13 62 79 1667 1666 F 18 0.00 1252 reject_low 29 ALIGNMENT 0 Y12-15m23.q1k chr02 217 712 2414 2413 F 496 0.00 1252 reject_low 208 ALIGNMENT 0 Y12-15m23.q1k chr12 325 712 7750 7749 F 388 0.00 1252 reject_low 105 ALIGNMENT 127 Y12-15m23.q1k chr14 44 221 1790 1967 F 178 91.57 1252 reject_low 333 ALIGNMENT 42 Y12-15m23.q1k chr06 513 628 894 1009 F 116 79.31 1252 reject_low 257 ALIGNMENT 0 Y12-15m23.q1k chr05 712 109 574894 574893 C 604 0.00 1252 reject_low 285 ALIGNMENT 0 Y12-15m23.q1k chr16 712 629 946091 946090 C 84 0.00 1252 reject_low 123 ALIGNMENT 0 Y12-15m23.q1k chr12 306 62 1076679 1076678 C 245 0.00 1252 reject_low 177 ALIGNMENT 0 Y12-15m23.q1k chr04 712 633 1530153 1530152 C 80 0.00 1252 reject_low 176 ALIGNMENT 0 Y12-15m23.q1k chr13 633 712 1895 1894 F 80 0.00 1252 reject_low 276 ALIGNMENT 0 Y12-15m23.q1k chr14 62 162 1585 1584 F 101 0.00 1252 reject_low 161 ALIGNMENT 0 Y12-15m23.q1k chr05 527 712 2060 2059 F 186 0.00 1252 reject_low 67 ALIGNMENT 0 Y12-15m23.q1k chr13 433 712 2091 2090 F 280 0.00 1252 reject_low 64 ALIGNMENT 0 Y12-15m23.q1k chr12 450 109 1070016 1076264 C 342 0.00 1252 reject_low 355 ALIGNMENT 372 Y12-15m23.q1k chr08 1003 235 560061 560830 C 769 84.40 1252 ambiguous_tel 5 ALIGNMENT 0 Y12-15m23.q1k chr09 237 712 2382 2381 F 476 0.00 1252 reject_low 248 ALIGNMENT 0 Y12-15m23.q1k chr12 712 562 1076257 1076256 C 151 0.00 1252 reject_low 306 ALIGNMENT 34 Y12-15m23.q1k chr05 108 44 574893 574957 C 65 86.15 1252 reject_low 285 ALIGNMENT 214 Y12-15m23.q1k chr02 33 632 1619 2218 F 600 79.50 1252 reject_low 46 ALIGNMENT 0 Y12-15m23.q1k chr12 502 503 1069652 1076266 C 0 0.00 1252 reject_low 313 ALIGNMENT 112 Y12-15m23.q1k chr09 34 344 2072 2382 F 311 79.74 1252 reject_low 170 ALIGNMENT 136 Y12-15m23.q1k chr08 324 33 560417 560708 C 292 83.22 1252 reject_low 133 ALIGNMENT 148 Y12-15m23.q1k chr05 34 376 1712 2054 F 343 82.22 1252 reject_low 121 ALIGNMENT 0 Y12-15m23.q1k chr16 502 150 946012 945992 C 353 0.00 1252 reject_low 347 ALIGNMENT 0 Y12-15m23.q1k chr05 453 712 2058 2057 F 260 0.00 1252 reject_low 56 ALIGNMENT 37 Y12-15m23.q1k chr02 34 149 2268 2383 F 116 79.31 1252 reject_low 350 ALIGNMENT 0 Y12-15m23.q1k chr09 62 414 1697 1696 F 353 0.00 1252 reject_low 255 ALIGNMENT 0 Y12-15m23.q1k chr02 62 234 1497 1496 F 173 0.00 1252 reject_low 130 ALIGNMENT 237 Y12-15m23.q1k chr13 34 396 1729 2091 F 363 89.53 1252 reject_low 39 ALIGNMENT 82 Y12-15m23.q1k chr16 632 307 946158 946483 C 326 75.77 1252 reject_low 213 ALIGNMENT 34 Y12-15m23.q1k chr14 44 108 1934 1998 F 65 86.15 1252 reject_low 290 ALIGNMENT 0 Y12-15m23.q1k chr04 712 562 1530056 1530055 C 151 0.00 1252 reject_low 336,351 ALIGNMENT 0 Y12-15m23.q1k chr16 712 633 946015 946014 C 80 0.00 1252 reject_low 91 ALIGNMENT 0 Y12-15m23.q1k chr14 62 258 1573 1572 F 197 0.00 1252 reject_low 156 ALIGNMENT 0 Y12-15m23.q1k chr02 614 712 1695 1694 F 99 0.00 1252 reject_low 251 ALIGNMENT 0 Y12-15m23.q1k chr08 402 712 1900 1899 F 311 0.00 1252 reject_low 169 ALIGNMENT 0 Y12-15m23.q1k chr14 289 712 1998 1997 F 424 0.00 1252 reject_low 142 ALIGNMENT 227 Y12-15m23.q1k chr02 44 632 1486 2074 F 589 80.48 1252 reject_low 44 ALIGNMENT 652 Y12-15m24.p1k chr05 1 874 382208 383082 F 874 93.94 1141 accept 0 ALIGNMENT 960 Y12-15m24.q1k chr05 1214 34 385226 386399 C 1181 95.43 1217 accept 0 ALIGNMENT 535 Y12-15n02.p1k chr08 107 840 284936 285653 F 734 93.32 1371 accept_chi 1 ALIGNMENT 871 Y12-15n02.q1k chr14 36 1122 177407 178496 F 1087 95.58 1313 accept_chi 0 ALIGNMENT 20 Y12-15n03.q1k chr10 1070 1043 25328 25356 C 28 89.29 1332 reject_low 8 ALIGNMENT 0 Y12-15n03.p1k chr02 789 579 187072 187071 C 211 0.00 1268 reject_low 7 ALIGNMENT 0 Y12-15n03.q1k chr02 62 310 805353 805352 F 249 0.00 1332 reject_low 5 ALIGNMENT 569 Y12-15n03.p1k chr14 739 12 750395 751123 C 728 93.13 1268 reject_low 3 ALIGNMENT 297 Y12-15n03.q1k chr07 311 944 1076613 1077246 F 634 82.18 1332 reject_low 6 ALIGNMENT 877 Y12-15n03.p1k chr09 12 1041 15368 16390 F 1030 96.12 1268 ambiguous_tel 1 ALIGNMENT 140 Y12-15n03.q1k chr10 792 339 25609 26062 C 454 77.09 1332 reject_low 8 ALIGNMENT 0 Y12-15n03.q1k chr10 1042 793 25357 25608 C 250 0.00 1332 reject_low 8 ALIGNMENT 142 Y12-15n03.p1k chr02 417 12 187232 187638 C 406 79.31 1268 reject_low 7 ALIGNMENT 297 Y12-15n03.q1k chr02 311 944 805353 805986 F 634 82.18 1332 reject_low 5 ALIGNMENT 949 Y12-15n03.q1k chr10 1117 33 17706 18804 C 1085 96.31 1332 ambiguous_tel 0 ALIGNMENT 0 Y12-15n03.q1k chr07 299 62 1068998 1068997 C 238 0.00 1332 reject_low 4 ALIGNMENT 520 Y12-15n03.q1k chr07 1121 300 1068162 1068997 C 822 87.96 1332 reject_low 4 ALIGNMENT 23 Y12-15n03.p1k chr02 578 491 187071 187157 C 88 76.14 1268 reject_low 7 ALIGNMENT 875 Y12-15n03.q1k chr15 1121 33 23458 24572 C 1089 94.03 1332 reject_low 2 ALIGNMENT 0 Y12-15n03.p1k chr14 789 740 750396 750395 C 50 0.00 1268 reject_low 3 ALIGNMENT 0 Y12-15n03.q1k chr10 338 62 26063 26062 C 277 0.00 1332 reject_low 8 ALIGNMENT 0 Y12-15n03.p1k chr02 490 418 187158 187231 C 73 0.00 1268 reject_low 7 ALIGNMENT 880 Y12-15n03.p1k chr10 12 1041 15351 16373 F 1030 96.21 1268 ambiguous_tel 0 ALIGNMENT 949 Y12-15n03.q1k chr09 1117 33 17723 18821 C 1085 96.31 1332 ambiguous_tel 1 ALIGNMENT 0 Y12-15n03.q1k chr07 62 310 1076613 1076612 F 249 0.00 1332 reject_low 6 ALIGNMENT 679 Y12-15n04.q1k chr14 35 1115 177410 178484 F 1081 90.19 1383 accept 0 ALIGNMENT 959 Y12-15n05.q1k chr11 1160 31 176144 177289 C 1130 95.93 1310 accept 0 ALIGNMENT 781 Y12-15n05.p1k chr11 26 1081 172837 173887 F 1056 92.33 1241 accept 0 ALIGNMENT 1060 Y12-15n09.q1k chr16 1295 28 861803 863076 C 1268 95.35 1335 accept 0 ALIGNMENT 834 Y12-15n09.p1k chr16 1 930 857203 858120 F 930 98.17 1280 accept 0 ALIGNMENT 0 Y12-15n10.p1k chr13 62 434 339551 339550 F 373 0.00 1290 reject_low 1 ALIGNMENT 130 Y12-15n10.p1k chr13 435 624 339551 339738 F 190 91.05 1290 reject_low 1 ALIGNMENT 891 Y12-15n10.p1k chr04 1048 16 828806 829829 C 1033 97.39 1290 accept 0 ALIGNMENT 0 Y12-15n10.p1k chr13 625 766 339738 339737 F 142 0.00 1290 reject_low 1 ALIGNMENT 982 Y12-15n10.q1k chr04 34 1148 825359 826475 F 1115 97.40 1332 accept 0 ALIGNMENT 0 Y12-15n11.p1k chr05 819 419 397267 397266 C 401 0.00 1291 reject_low 1 ALIGNMENT 308 Y12-15n11.p1k chr05 418 31 397266 397650 C 388 93.81 1291 reject_low 1 ALIGNMENT 902 Y12-15n11.p1k chr02 17 1098 59804 60859 F 1082 96.40 1291 accept 0 ALIGNMENT 829 Y12-15n11.q1k chr02 988 36 64643 65594 C 953 96.75 1469 accept 0 ALIGNMENT 980 Y12-15n12.q1k chr10 1151 28 513080 514220 C 1124 96.89 1412 accept 0 ALIGNMENT 952 Y12-15n12.p1k chr10 16 1097 508562 509629 F 1082 97.50 1283 accept 0 ALIGNMENT 1018 Y12-15n14.q1k chr08 37 1265 89504 90743 F 1229 96.83 1325 ambiguous_trans 2 ALIGNMENT 921 Y12-15n14.p1k chr12 1 1134 732503 733618 F 1134 95.15 1204 accept 0 ALIGNMENT 1018 Y12-15n14.q1k chr16 1265 37 437901 439140 C 1229 96.83 1325 ambiguous_trans 3 ALIGNMENT 1033 Y12-15n14.q1k chr10 37 1265 201436 202675 F 1229 97.23 1325 ambiguous_trans 1 ALIGNMENT 789 Y12-15n15.p1k chr12 33 1008 738051 739007 F 976 95.80 1366 accept 0 ALIGNMENT 1040 Y12-15n15.q1k chr12 1229 29 740747 741937 C 1201 96.84 1329 accept 0 ALIGNMENT 934 Y12-15n16.p1k chr09 1135 22 347616 348716 C 1114 96.14 1242 accept 0 ALIGNMENT 1067 Y12-15n16.q1k chr09 39 1222 343253 344430 F 1184 97.47 1334 accept 0 ALIGNMENT 930 Y12-15n18.p1k chr11 1065 17 564640 565683 C 1049 97.52 1247 accept 0 ALIGNMENT 0 Y12-15n18.q1k chr15 851 96 227289 227288 C 756 0.00 1278 reject_low 1 ALIGNMENT 1039 Y12-15n18.q1k chr11 31 1253 561366 562599 F 1223 95.75 1278 accept 0 ALIGNMENT 21 Y12-15n18.q1k chr15 95 73 227288 227310 C 23 100.00 1278 reject_low 1 ALIGNMENT 0 Y12-15n19.q1k chr04 704 421 11655 11654 C 284 0.00 1352 reject_low 2 ALIGNMENT 717 Y12-15n19.q1k chr05 913 32 21051 21921 C 882 95.69 1352 accept 0 ALIGNMENT 827 Y12-15n19.p1k chr05 16 1041 18056 19063 F 1026 95.61 1341 accept 0 ALIGNMENT 641 Y12-15n19.q1k chr14 32 913 773967 774838 F 882 92.74 1352 reject_low 1 ALIGNMENT 258 Y12-15n19.q1k chr10 32 420 733674 734061 F 389 89.72 1352 reject_low 3 ALIGNMENT 261 Y12-15n19.q1k chr04 420 32 11654 12041 C 389 89.97 1352 reject_low 2 ALIGNMENT 0 Y12-15n19.q1k chr10 421 704 734061 734060 F 284 0.00 1352 reject_low 3 ALIGNMENT 1023 Y12-15n21.q1k chr13 33 1195 751908 753087 F 1163 96.73 1196 accept 0 ALIGNMENT 926 Y12-15n21.p1k chr13 1124 29 755377 756471 C 1096 95.89 1157 accept 0 ALIGNMENT 893 Y12-15n22.p1k chr12 22 1036 431907 432909 F 1015 98.13 1188 accept 0 ALIGNMENT 983 Y12-15n22.q1k chr12 1212 36 435042 436219 C 1177 95.67 1214 accept 0 ALIGNMENT 400 Y12-15n23.p1k chr10 713 93 362107 362720 C 621 89.21 1338 accept 0 ALIGNMENT 1042 Y12-15n23.q1k chr10 35 1176 360539 361677 F 1142 97.37 1210 accept 0 ALIGNMENT 0 Y12-15n24.p1k chr12 83 62 233061 233060 C 22 0.00 1206 reject_low 2 ALIGNMENT 0 Y12-15n24.q1k chr16 62 599 731219 731218 F 538 0.00 1206 reject_low 1 ALIGNMENT 157 Y12-15n24.p1k chr12 618 84 232526 233060 C 535 76.45 1206 reject_low 2 ALIGNMENT 0 Y12-15n24.p1k chr12 792 619 232527 232526 C 174 0.00 1206 reject_low 2 ALIGNMENT 1017 Y12-15n24.q1k chr07 34 1206 647818 648981 F 1173 96.85 1206 accept 0 ALIGNMENT 422 Y12-15n24.q1k chr16 600 1120 731219 731737 F 521 94.43 1206 reject_low 1 ALIGNMENT 928 Y12-15n24.p1k chr07 1092 15 650962 652033 C 1078 96.38 1206 accept 0 ALIGNMENT 0 Y12-15o01.q1k chr06 62 994 268665 268664 F 933 0.00 1313 accept 0 ALIGNMENT 28 Y12-15o01.q1k chr06 995 1066 268665 268738 F 72 80.56 1313 accept 0 ALIGNMENT 1085 Y12-15o02.q1k chr12 36 1313 591188 592463 F 1278 96.09 1336 accept_trans 0 ALIGNMENT 950 Y12-15o02.p1k chr12 1121 12 599794 600896 C 1110 96.31 1193 accept_trans 0 ALIGNMENT 0 Y12-15o03.p1k chr16 269 62 946495 946494 C 208 0.00 1233 reject_low 230 ALIGNMENT 122 Y12-15o03.p1k chr14 29 226 1801 1998 F 198 87.88 1233 reject_low 134 ALIGNMENT 90 Y12-15o03.p1k chr05 530 245 575021 575306 C 286 77.97 1233 reject_low 203 ALIGNMENT 0 Y12-15o03.p1k chr07 814 531 1089099 1089098 C 284 0.00 1233 reject_low 204 ALIGNMENT 0 Y12-15o03.p1k chr14 535 814 1802 1801 F 280 0.00 1233 reject_low 279 ALIGNMENT 163 Y12-15o03.p1k chr13 11 334 1768 2091 F 324 84.26 1233 reject_low 77 ALIGNMENT 0 Y12-15o03.p1k chr16 814 479 945963 945962 C 336 0.00 1233 reject_low 85 ALIGNMENT 115 Y12-15o03.p1k chr04 534 161 1530116 1530489 C 374 77.81 1233 reject_low 159 ALIGNMENT 0 Y12-15o03.p1k chr10 531 814 1965 1964 F 284 0.00 1233 reject_low 189 ALIGNMENT 0 Y12-15o03.p1k chr10 62 352 1680 1679 F 291 0.00 1233 reject_low 267 ALIGNMENT 0 Y12-15o03.p1k chr05 319 814 2058 2057 F 496 0.00 1233 reject_low 86 ALIGNMENT 516 Y12-15o03.p1k chr05 1089 137 574368 575306 C 953 86.67 1233 reject_low 9 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 1858 1857 F 280 0.00 1233 reject_low 122 ALIGNMENT 0 Y12-15o03.p1k chr09 531 814 2126 2125 F 284 0.00 1233 reject_low 90 ALIGNMENT 0 Y12-15o03.p1k chr05 814 535 574982 574981 C 280 0.00 1233 reject_low 182 ALIGNMENT 0 Y12-15o03.p1k chr16 535 814 1819 1818 F 280 0.00 1233 reject_low 187 ALIGNMENT 53 Y12-15o03.p1k chr10 317 515 1680 1878 F 199 76.38 1233 reject_low 249 ALIGNMENT 0 Y12-15o03.p1k chr04 244 62 1530478 1530477 C 183 0.00 1233 reject_low 202 ALIGNMENT 0 Y12-15o03.p1k chr14 535 814 1946 1945 F 280 0.00 1233 reject_low 147 ALIGNMENT 82 Y12-15o03.p1k chr04 534 270 1530224 1530488 C 265 77.74 1233 reject_low 213 ALIGNMENT 0 Y12-15o03.p1k chr13 119 814 2091 2090 F 696 0.00 1233 reject_low 257 ALIGNMENT 0 Y12-15o03.p1k chr10 516 814 1878 1877 F 299 0.00 1233 reject_low 249 ALIGNMENT 0 Y12-15o03.p1k chr08 814 464 560409 560408 C 351 0.00 1233 reject_low 316 ALIGNMENT 93 Y12-15o03.p1k chr16 123 14 945993 946102 C 110 95.45 1233 reject_low 324 ALIGNMENT 0 Y12-15o03.p1k chr02 62 160 1485 1484 F 99 0.00 1233 reject_low 122 ALIGNMENT 47 Y12-15o03.p1k chr07 118 29 1088970 1089059 C 90 84.44 1233 reject_low 253 ALIGNMENT 0 Y12-15o03.p1k chr06 62 414 894 893 F 353 0.00 1233 reject_low 262 ALIGNMENT 115 Y12-15o03.p1k chr12 534 161 1076317 1076690 C 374 77.81 1233 reject_low 160 ALIGNMENT 0 Y12-15o03.p1k chr12 62 352 1694 1693 F 291 0.00 1233 reject_low 264 ALIGNMENT 236 Y12-15o03.p1k chr12 14 404 7358 7748 F 391 87.72 1233 reject_low 27 ALIGNMENT 0 Y12-15o03.p1k chr13 405 814 2089 2088 F 410 0.00 1233 reject_low 28 ALIGNMENT 0 Y12-15o03.p1k chr05 62 244 1481 1480 F 183 0.00 1233 reject_low 222 ALIGNMENT 163 Y12-15o03.p1k chr14 11 334 1675 1998 F 324 84.26 1233 reject_low 78 ALIGNMENT 122 Y12-15o03.p1k chr12 29 226 2018 2215 F 198 87.88 1233|0,9 reject_low 306 ALIGNMENT 0 Y12-15o03.p1k chr10 279 814 2361 2360 F 536 0.00 1233 reject_low 127 ALIGNMENT 0 Y12-15o03.p1k chr08 196 814 1900 1899 F 619 0.00 1233 reject_low 119 ALIGNMENT 53 Y12-15o03.p1k chr09 317 515 1697 1895 F 199 76.38 1233 reject_low 248 ALIGNMENT 168 Y12-15o03.p1k chr09 18 534 1686 2202 F 517 78.34 1233 reject_low 70 ALIGNMENT 0 Y12-15o03.p1k chr12 362 361 2207 7345 F 0 0.00 1233 reject_low 314 ALIGNMENT 0 Y12-15o03.p1k chr08 814 535 560470 560469 C 280 0.00 1233 reject_low 145 ALIGNMENT 140 Y12-15o03.p1k chr09 11 354 2039 2382 F 344 81.10 1233 reject_low 115 ALIGNMENT 783 Y12-15o03.p1k chr09 11 1089 1859 2911 F 1079 92.59 1233 ambiguous_tel 1 ALIGNMENT 0 Y12-15o03.p1k chr02 62 244 1497 1496 F 183 0.00 1233 reject_low 234 ALIGNMENT 697 Y12-15o03.p1k chr06 161 1089 892 1777 F 929 94.29 1233 ambiguous_tel 2 ALIGNMENT 0 Y12-15o03.p1k chr10 531 814 2037 2036 F 284 0.00 1233 reject_low 174 ALIGNMENT 75 Y12-15o03.p1k chr12 270 515 1683 1928 F 246 77.64 1233 reject_low 233 ALIGNMENT 98 Y12-15o03.p1k chr02 29 226 2217 2414 F 198 83.84 1233 reject_low 178 ALIGNMENT 93 Y12-15o03.p1k chr12 14 123 2075 2184 F 110 95.45 1233 reject_low 17,305 ALIGNMENT 41 Y12-15o03.p1k chr10 64 138 2291 2365 F 75 85.33 1233 reject_low 285 ALIGNMENT 91 Y12-15o03.p1k chr12 18 190 2043 2215 F 173 84.97 1233 reject_low 311 ALIGNMENT 0 Y12-15o03.p1k chr02 371 814 2414 2413 F 444 0.00 1233 reject_low 93 ALIGNMENT 138 Y12-15o03.p1k chr02 14 262 2166 2414 F 249 85.94 1233 reject_low 118 ALIGNMENT 0 Y12-15o03.p1k chr08 244 62 560831 560830 C 183 0.00 1233 reject_low 225 ALIGNMENT 122 Y12-15o03.p1k chr08 65 303 1662 1900 F 239 84.52 1233 reject_low 156 ALIGNMENT 0 Y12-15o03.p1k chr04 814 535 1530153 1530152 C 280 0.00 1233 reject_low 175 ALIGNMENT 47 Y12-15o03.p1k chr12 29 118 7661 7750 F 90 84.44 1233 reject_low 255 ALIGNMENT 96 Y12-15o03.p1k chr05 534 209 574981 575306 C 326 77.30 1233 reject_low 182 ALIGNMENT 30 Y12-15o03.p1k chr13 353 530 1678 1855 F 178 73.03 1233 reject_low 293 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 2218 2217 F 280 0.00 1233 reject_low 44 ALIGNMENT 0 Y12-15o03.p1k chr12 263 814 7750 7749 F 552 0.00 1233 reject_low 59 ALIGNMENT 47 Y12-15o03.p1k chr04 118 29 1530064 1530153 C 90 84.44 1233 reject_low 251 ALIGNMENT 119 Y12-15o03.p1k chr16 534 89 946050 946495 C 446 76.46 1233 reject_low 141 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 7662 7661 F 280 0.00 1233 reject_low 306 ALIGNMENT 160 Y12-15o03.p1k chr15 334 11 1089229 1089552 C 324 83.95 1233 reject_low 84 ALIGNMENT 122 Y12-15o03.p1k chr13 29 226 1894 2091 F 198 87.88 1233 reject_low 133 ALIGNMENT 175 Y12-15o03.p1k chr12 298 11 1076265 1076552 C 288 87.85 1233 reject_low 304 ALIGNMENT 212 Y12-15o03.p1k chr08 404 14 560419 560809 C 391 85.68 1233 reject_low 40 ALIGNMENT 0 Y12-15o03.p1k chr12 62 404 2166 2165 F 343 0.00 1233 reject_low 297 ALIGNMENT 0 Y12-15o03.p1k chr12 218 217 2207 7345 F 0 0.00 1233 reject_low 306 ALIGNMENT 0 Y12-15o03.p1k chr10 393 814 2367 2366 F 422 0.00 1233 reject_low 167 ALIGNMENT 0 Y12-15o03.p1k chr06 537 814 1159 1158 F 278 0.00 1233 reject_low 157 ALIGNMENT 0 Y12-15o03.p1k chr10 539 814 2309 2308 F 276 0.00 1233 reject_low 42 ALIGNMENT 77 Y12-15o03.p1k chr05 29 210 1877 2058 F 182 81.32 1233 reject_low 228 ALIGNMENT 121 Y12-15o03.p1k chr13 65 478 1678 2091 F 414 77.29 1233 reject_low 152 ALIGNMENT 45 Y12-15o03.p1k chr10 18 210 2173 2365 F 193 75.13 1233 reject_low 270 ALIGNMENT 0 Y12-15o03.p1k chr07 814 535 1089167 1089166 C 280 0.00 1233 reject_low 275 ALIGNMENT 0 Y12-15o03.p1k chr08 62 352 1662 1661 F 291 0.00 1233 reject_low 235 ALIGNMENT 194 Y12-15o03.p1k chr05 18 536 1470 1988 F 519 79.96 1233 reject_low 43 ALIGNMENT 0 Y12-15o03.p1k chr15 814 227 1089230 1089229 C 588 0.00 1233 reject_low 140 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1076462 1076461 C 280 0.00 1233 reject_low 277 ALIGNMENT 0 Y12-15o03.p1k chr14 62 352 1585 1584 F 291 0.00 1233 reject_low 294 ALIGNMENT 112 Y12-15o03.p1k chr05 29 278 1805 2054 F 250 82.40 1233 reject_low 168 ALIGNMENT 178 Y12-15o03.p1k chr16 11 298 1620 1907 F 288 88.19 1233 reject_low 50 ALIGNMENT 165 Y12-15o03.p1k chr12 11 262 7499 7750 F 252 89.29 1233 reject_low 59 ALIGNMENT 0 Y12-15o03.p1k chr08 814 191 560418 560417 C 624 0.00 1233 reject_low 170 ALIGNMENT 0 Y12-15o03.p1k chr15 814 535 1089426 1089425 C 280 0.00 1233 reject_low 280 ALIGNMENT 0 Y12-15o03.p1k chr16 814 531 946091 946090 C 284 0.00 1233 reject_low 102 ALIGNMENT 0 Y12-15o03.p1k chr16 299 814 1907 1906 F 516 0.00 1233 reject_low 50 ALIGNMENT 0 Y12-15o03.p1k chr12 316 62 1076679 1076678 C 255 0.00 1233 reject_low 277 ALIGNMENT 0 Y12-15o03.p1k chr08 539 814 1847 1846 F 276 0.00 1233 reject_low 235 ALIGNMENT 0 Y12-15o03.p1k chr10 531 814 1857 1856 F 284 0.00 1233 reject_low 267 ALIGNMENT 0 Y12-15o03.p1k chr16 62 244 1494 1493 F 183 0.00 1233 reject_low 209 ALIGNMENT 0 Y12-15o03.p1k chr12 62 244 1694 1693 F 183 0.00 1233 reject_low 239 ALIGNMENT 0 Y12-15o03.p1k chr05 62 269 1470 1469 F 208 0.00 1233 reject_low 229 ALIGNMENT 93 Y12-15o03.p1k chr05 123 14 574924 575033 C 110 95.45 1233 reject_low 318 ALIGNMENT 0 Y12-15o03.p1k chr06 62 340 892 891 F 279 0.00 1233 reject_low 247 ALIGNMENT 0 Y12-15o03.p1k chr04 352 62 1530478 1530477 C 291 0.00 1233 reject_low 288 ALIGNMENT 236 Y12-15o03.p1k chr07 404 14 1088972 1089362 C 391 87.72 1233 reject_low 26 ALIGNMENT 0 Y12-15o03.p1k chr07 814 227 1088971 1088970 C 588 0.00 1233 reject_low 131 ALIGNMENT 0 Y12-15o03.p1k chr08 404 124 560467 560447 C 281 0.00 1233 reject_low 316 ALIGNMENT 0 Y12-15o03.p1k chr04 814 535 1530225 1530224 C 280 0.00 1233 reject_low 213 ALIGNMENT 0 Y12-15o03.p1k chr06 62 269 893 892 F 208 0.00 1233 reject_low 157 ALIGNMENT 0 Y12-15o03.p1k chr02 124 404 2384 2364 F 281 0.00 1233 reject_low 315 ALIGNMENT 0 Y12-15o03.p1k chr08 269 62 560842 560841 C 208 0.00 1233 reject_low 221 ALIGNMENT 178 Y12-15o03.p1k chr16 298 11 945962 946249 C 288 88.19 1233 reject_low 51 ALIGNMENT 0 Y12-15o03.p1k chr13 62 269 1667 1666 F 208 0.00 1233 reject_low 217 ALIGNMENT 0 Y12-15o03.p1k chr13 299 814 2091 2090 F 516 0.00 1233 reject_low 48 ALIGNMENT 165 Y12-15o03.p1k chr12 11 262 1964 2215 F 252 89.29 1233|0,9 reject_low 300 ALIGNMENT 0 Y12-15o03.p1k chr14 62 160 1573 1572 F 99 0.00 1233 reject_low 147 ALIGNMENT 0 Y12-15o03.p1k chr05 429 814 2060 2059 F 386 0.00 1233 reject_low 113 ALIGNMENT 0 Y12-15o03.p1k chr09 537 814 2240 2239 F 278 0.00 1233 reject_low 31 ALIGNMENT 42 Y12-15o03.p1k chr16 317 534 1494 1711 F 218 73.85 1233 reject_low 281 ALIGNMENT 0 Y12-15o03.p1k chr05 62 208 1481 1480 F 147 0.00 1233 reject_low 171 ALIGNMENT 160 Y12-15o03.p1k chr12 334 11 1069602 1069925 C 324 83.95 1233 reject_low 83 ALIGNMENT 175 Y12-15o03.p1k chr04 298 11 1530064 1530351 C 288 87.85 1233 reject_low 52 ALIGNMENT 0 Y12-15o03.p1k chr13 535 814 2039 2038 F 280 0.00 1233 reject_low 146 ALIGNMENT 115 Y12-15o03.p1k chr15 534 161 1089281 1089654 C 374 77.81 1233 reject_low 161 ALIGNMENT 0 Y12-15o03.p1k chr07 814 531 1089207 1089206 C 284 0.00 1233 reject_low 290 ALIGNMENT 42 Y12-15o03.p1k chr12 534 317 1076461 1076678 C 218 73.85 1233 reject_low 277 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 2019 2018 F 280 0.00 1233 reject_low 224 ALIGNMENT 121 Y12-15o03.p1k chr16 65 478 1494 1907 F 414 77.29 1233 reject_low 154 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 7554 7553 F 280 0.00 1233 reject_low 303,310 ALIGNMENT 0 Y12-15o03.p1k chr08 814 335 560418 560417 C 480 0.00 1233 reject_low 117 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 1894 1893 F 280 0.00 1233 reject_low 114 ALIGNMENT 516 Y12-15o03.p1k chr14 137 1089 1585 2523 F 953 86.67 1233 reject_low 11 ALIGNMENT 275 Y12-15o03.p1k chr02 11 404 2019 2412 F 394 90.86 1233 reject_low 20 ALIGNMENT 0 Y12-15o03.p1k chr09 535 814 1950 1949 F 280 0.00 1233 reject_low 240 ALIGNMENT 0 Y12-15o03.p1k chr12 191 244 2216 7336 F 54 0.00 1233 reject_low 311 ALIGNMENT 93 Y12-15o03.p1k chr07 123 14 1089001 1089110 C 110 95.45 1233 reject_low 319 ALIGNMENT 0 Y12-15o03.p1k chr16 119 814 1907 1906 F 696 0.00 1233 reject_low 260 ALIGNMENT 0 Y12-15o03.p1k chr13 62 208 1678 1677 F 147 0.00 1233 reject_low 185 ALIGNMENT 0 Y12-15o03.p1k chr09 539 814 2326 2325 F 276 0.00 1233 reject_low 41 ALIGNMENT 0 Y12-15o03.p1k chr08 62 160 1650 1649 F 99 0.00 1233 reject_low 94 ALIGNMENT 0 Y12-15o03.p1k chr15 814 535 1089282 1089281 C 280 0.00 1233 reject_low 161 ALIGNMENT 0 Y12-15o03.p1k chr14 62 244 1585 1584 F 183 0.00 1233 reject_low 207 ALIGNMENT 0 Y12-15o03.p1k chr07 244 62 1089384 1089383 C 183 0.00 1233 reject_low 204 ALIGNMENT 43 Y12-15o03.p1k chr08 29 108 1842 1921 F 80 85.00 1233 reject_low 271 ALIGNMENT 0 Y12-15o03.p1k chr16 814 516 946250 946249 C 299 0.00 1233 reject_low 230 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 2146 2145 F 280 0.00 1233 reject_low 23 ALIGNMENT 0 Y12-15o03.p1k chr14 531 814 1762 1761 F 284 0.00 1233 reject_low 294 ALIGNMENT 0 Y12-15o03.p1k chr12 531 814 7514 7513 F 284 0.00 1233 reject_low 314 ALIGNMENT 150 Y12-15o03.p1k chr02 29 298 2145 2414 F 270 85.93 1233 reject_low 103 ALIGNMENT 42 Y12-15o03.p1k chr05 14 138 1934 2058 F 125 78.40 1233 reject_low 268 ALIGNMENT 70 Y12-15o03.p1k chr06 29 246 1048 1265 F 218 77.98 1233 reject_low 242 ALIGNMENT 90 Y12-15o03.p1k chr16 245 530 1494 1779 F 286 77.97 1233 reject_low 209 ALIGNMENT 30 Y12-15o03.p1k chr04 530 353 1530300 1530477 C 178 73.03 1233 reject_low 288 ALIGNMENT 148 Y12-15o03.p1k chr16 534 161 946122 946495 C 374 80.75 1233 reject_low 104 ALIGNMENT 25 Y12-15o03.p1k chr05 463 405 574884 574942 C 59 81.36 1233 reject_low 318 ALIGNMENT 0 Y12-15o03.p1k chr10 429 814 2367 2366 F 386 0.00 1233 reject_low 65 ALIGNMENT 0 Y12-15o03.p1k chr09 62 316 1697 1696 F 255 0.00 1233 reject_low 248 ALIGNMENT 90 Y12-15o03.p1k chr12 123 14 1076296 1076405 C 110 94.55 1233 reject_low 18,308 ALIGNMENT 178 Y12-15o03.p1k chr12 11 298 1928 2215 F 288 88.19 1233 reject_low 303 ALIGNMENT 70 Y12-15o03.p1k chr10 270 534 1669 1933 F 265 76.23 1233 reject_low 241 ALIGNMENT 178 Y12-15o03.p1k chr14 11 298 1711 1998 F 288 88.19 1233 reject_low 49 ALIGNMENT 0 Y12-15o03.p1k chr15 316 62 1089643 1089642 C 255 0.00 1233 reject_low 280 ALIGNMENT 150 Y12-15o03.p1k chr05 370 14 574893 575249 C 357 81.51 1233 reject_low 96 ALIGNMENT 0 Y12-15o03.p1k chr08 269 814 1937 1936 F 546 0.00 1233 reject_low 125 ALIGNMENT 0 Y12-15o03.p1k chr05 537 814 1952 1951 F 278 0.00 1233 reject_low 106 ALIGNMENT 0 Y12-15o03.p1k chr16 62 352 1494 1493 F 291 0.00 1233 reject_low 296 ALIGNMENT 30 Y12-15o03.p1k chr07 530 353 1089206 1089383 C 178 73.03 1233 reject_low 290 ALIGNMENT 0 Y12-15o03.p1k chr08 62 244 1662 1661 F 183 0.00 1233 reject_low 16 ALIGNMENT 99 Y12-15o03.p1k chr09 137 530 1697 2090 F 394 75.89 1233 reject_low 180 ALIGNMENT 0 Y12-15o03.p1k chr12 160 124 1070028 1076295 C 37 0.00 1233 reject_low 308 ALIGNMENT 233 Y12-15o03.p1k chr12 404 14 1069604 1069994 C 391 87.47 1233 reject_low 34 ALIGNMENT 102 Y12-15o03.p1k chr10 161 530 1668 2037 F 370 76.76 1233 reject_low 174 ALIGNMENT 0 Y12-15o03.p1k chr08 208 62 560831 560830 C 147 0.00 1233 reject_low 184 ALIGNMENT 519 Y12-15o03.p1k chr13 137 1089 1678 2616 F 953 86.78 1233 reject_low 7 ALIGNMENT 151 Y12-15o03.p1k chr06 29 354 940 1265 F 326 82.82 1233 reject_low 107 ALIGNMENT 0 Y12-15o03.p1k chr12 253 254 1070007 1076273 C 0 0.00 1233 reject_low 301 ALIGNMENT 99 Y12-15o03.p1k chr12 534 209 1076353 1076678 C 326 77.61 1233 reject_low 176 ALIGNMENT 0 Y12-15o03.p1k chr16 352 62 946484 946483 C 291 0.00 1233 reject_low 265 ALIGNMENT 119 Y12-15o03.p1k chr12 226 29 1076265 1076462 C 198 87.37 1233|9,0 reject_low 307 ALIGNMENT 0 Y12-15o03.p1k chr14 535 814 1838 1837 F 280 0.00 1233 reject_low 218 ALIGNMENT 0 Y12-15o03.p1k chr12 814 191 1069603 1069602 C 624 0.00 1233 reject_low 198 ALIGNMENT 0 Y12-15o03.p1k chr06 429 814 1267 1266 F 386 0.00 1233 reject_low 73 ALIGNMENT 513 Y12-15o03.p1k chr12 1089 137 1069077 1070015 C 953 86.57 1233 reject_low 18 ALIGNMENT 0 Y12-15o03.p1k chr02 525 814 1668 1667 F 290 0.00 1233 reject_low 286 ALIGNMENT 0 Y12-15o03.p1k chr07 814 535 1089131 1089130 C 280 0.00 1233 reject_low 215 ALIGNMENT 0 Y12-15o03.p1k chr12 244 62 1076679 1076678 C 183 0.00 1233 reject_low 205 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1069763 1069762 C 280 0.00 1233 reject_low 313 ALIGNMENT 0 Y12-15o03.p1k chr12 814 227 1069603 1069602 C 588 0.00 1233 reject_low 139 ALIGNMENT 95 Y12-15o03.p1k chr08 123 11 560448 560560 C 113 95.58 1233 reject_low 316 ALIGNMENT 0 Y12-15o03.p1k chr08 814 531 560654 560653 C 284 0.00 1233 reject_low 291 ALIGNMENT 0 Y12-15o03.p1k chr09 211 814 2382 2381 F 604 0.00 1233 reject_low 269 ALIGNMENT 101 Y12-15o03.p1k chr02 14 190 2238 2414 F 177 86.44 1233 reject_low 169 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 2163 2162 F 280 0.00 1233 reject_low 66 ALIGNMENT 163 Y12-15o03.p1k chr12 14 334 1895 2215 F 321 84.42 1233|0,9 reject_low 310 ALIGNMENT 0 Y12-15o03.p1k chr12 814 531 1076502 1076501 C 284 0.00 1233 reject_low 292 ALIGNMENT 0 Y12-15o03.p1k chr16 62 160 1482 1481 F 99 0.00 1233 reject_low 148 ALIGNMENT 85 Y12-15o03.p1k chr06 305 536 892 1123 F 232 79.74 1233 reject_low 200 ALIGNMENT 115 Y12-15o03.p1k chr12 534 161 1069654 1070027 C 374 77.81 1233 reject_low 308 ALIGNMENT 0 Y12-15o03.p1k chr07 814 535 1089059 1089058 C 280 0.00 1233 reject_low 183 ALIGNMENT 122 Y12-15o03.p1k chr05 226 29 574893 575090 C 198 87.88 1233 reject_low 130 ALIGNMENT 0 Y12-15o03.p1k chr07 352 62 1089384 1089383 C 291 0.00 1233 reject_low 290 ALIGNMENT 0 Y12-15o03.p1k chr12 269 62 1076690 1076689 C 208 0.00 1233 reject_low 216 ALIGNMENT 0 Y12-15o03.p1k chr10 211 814 2365 2364 F 604 0.00 1233 reject_low 270 ALIGNMENT 0 Y12-15o03.p1k chr05 208 62 575307 575306 C 147 0.00 1233 reject_low 182 ALIGNMENT 47 Y12-15o03.p1k chr16 29 118 1818 1907 F 90 84.44 1233 reject_low 260 ALIGNMENT 0 Y12-15o03.p1k chr12 479 814 7750 7749 F 336 0.00 1233 reject_low 151 ALIGNMENT 0 Y12-15o03.p1k chr14 62 136 1585 1584 F 75 0.00 1233 reject_low 11 ALIGNMENT 0 Y12-15o03.p1k chr16 208 62 946484 946483 C 147 0.00 1233 reject_low 212 ALIGNMENT 82 Y12-15o03.p1k chr07 534 270 1089130 1089394 C 265 77.74 1233 reject_low 215 ALIGNMENT 0 Y12-15o03.p1k chr14 371 814 1998 1997 F 444 0.00 1233 reject_low 100 ALIGNMENT 115 Y12-15o03.p1k chr09 29 392 2021 2384 F 364 78.02 1233 reject_low 166 ALIGNMENT 0 Y12-15o03.p1k chr05 814 531 575022 575021 C 284 0.00 1233 reject_low 203 ALIGNMENT 236 Y12-15o03.p1k chr16 14 404 1515 1905 F 391 87.72 1233 reject_low 30 ALIGNMENT 0 Y12-15o03.p1k chr12 269 191 1070027 1076264 C 79 0.00 1233 reject_low 313 ALIGNMENT 25 Y12-15o03.p1k chr12 463 405 1076256 1076314 C 59 81.36 1233 reject_low 298 ALIGNMENT 25 Y12-15o03.p1k chr07 463 405 1088961 1089019 C 59 81.36 1233 reject_low 319 ALIGNMENT 78 Y12-15o03.p1k chr02 209 534 1497 1822 F 326 75.46 1233 reject_low 227 ALIGNMENT 91 Y12-15o03.p1k chr14 18 190 1826 1998 F 173 84.97 1233 reject_low 194 ALIGNMENT 0 Y12-15o03.p1k chr05 136 62 575307 575306 C 75 0.00 1233 reject_low 9 ALIGNMENT 150 Y12-15o03.p1k chr16 530 137 946090 946483 C 394 80.20 1233 reject_low 102 ALIGNMENT 0 Y12-15o03.p1k chr06 247 814 1265 1264 F 568 0.00 1233 reject_low 242 ALIGNMENT 0 Y12-15o03.p1k chr12 299 316 2216 7336 F 18 0.00 1233 reject_low 303 ALIGNMENT 0 Y12-15o03.p1k chr16 814 119 945963 945962 C 696 0.00 1233 reject_low 261 ALIGNMENT 0 Y12-15o03.p1k chr08 160 62 560843 560842 C 99 0.00 1233 reject_low 145 ALIGNMENT 0 Y12-15o03.p1k chr06 531 814 1009 1008 F 284 0.00 1233 reject_low 262 ALIGNMENT 0 Y12-15o03.p1k chr04 814 335 1530065 1530064 C 480 0.00 1233 reject_low 82 ALIGNMENT 0 Y12-15o03.p1k chr06 139 814 1265 1264 F 676 0.00 1233 reject_low 283 ALIGNMENT 0 Y12-15o03.p1k chr12 814 531 1076394 1076393 C 284 0.00 1233 reject_low 205 ALIGNMENT 82 Y12-15o03.p1k chr13 270 534 1667 1931 F 265 77.74 1233 reject_low 217 ALIGNMENT 90 Y12-15o03.p1k chr07 530 245 1089098 1089383 C 286 77.97 1233 reject_low 204 ALIGNMENT 0 Y12-15o03.p1k chr14 62 208 1585 1584 F 147 0.00 1233 reject_low 186 ALIGNMENT 162 Y12-15o03.p1k chr04 262 11 1530064 1530315 C 252 88.89 1233 reject_low 67 ALIGNMENT 0 Y12-15o03.p1k chr05 211 814 2058 2057 F 604 0.00 1233 reject_low 228 ALIGNMENT 0 Y12-15o03.p1k chr10 535 814 2005 2004 F 280 0.00 1233 reject_low 211 ALIGNMENT 0 Y12-15o03.p1k chr12 814 119 1069603 1069602 C 696 0.00 1233 reject_low 256 ALIGNMENT 165 Y12-15o03.p1k chr14 11 262 1747 1998 F 252 89.29 1233 reject_low 61 ALIGNMENT 0 Y12-15o03.p1k chr10 62 269 1669 1668 F 208 0.00 1233 reject_low 241 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 1966 1965 F 280 0.00 1233 reject_low 87 ALIGNMENT 0 Y12-15o03.p1k chr12 62 88 1682 1681 F 27 0.00 1233 reject_low 158 ALIGNMENT 0 Y12-15o03.p1k chr04 814 531 1530193 1530192 C 284 0.00 1233 reject_low 202 ALIGNMENT 0 Y12-15o03.p1k chr08 814 263 560418 560417 C 552 0.00 1233 reject_low 95 ALIGNMENT 120 Y12-15o03.p1k chr05 161 530 1469 1838 F 370 78.38 1233 reject_low 142 ALIGNMENT 93 Y12-15o03.p1k chr14 14 123 1858 1967 F 110 95.45 1233 reject_low 322 ALIGNMENT 0 Y12-15o03.p1k chr05 531 814 1730 1729 F 284 0.00 1233 reject_low 229 ALIGNMENT 236 Y12-15o03.p1k chr13 14 404 1699 2089 F 391 87.72 1233 reject_low 28 ALIGNMENT 161 Y12-15o03.p1k chr06 18 392 893 1267 F 375 81.87 1233 reject_low 89 ALIGNMENT 0 Y12-15o03.p1k chr09 535 814 2202 2201 F 280 0.00 1233 reject_low 70 ALIGNMENT 0 Y12-15o03.p1k chr08 814 535 560506 560505 C 280 0.00 1233 reject_low 184 ALIGNMENT 0 Y12-15o03.p1k chr07 316 62 1089384 1089383 C 255 0.00 1233 reject_low 275 ALIGNMENT 0 Y12-15o03.p1k chr06 62 304 892 891 F 243 0.00 1233 reject_low 200 ALIGNMENT 0 Y12-15o03.p1k chr12 531 814 7622 7621 F 284 0.00 1233 reject_low 300,311 ALIGNMENT 152 Y12-15o03.p1k chr16 370 29 945962 946303 C 342 82.16 1233 reject_low 105 ALIGNMENT 0 Y12-15o03.p1k chr16 479 814 1907 1906 F 336 0.00 1233 reject_low 154 ALIGNMENT 136 Y12-15o03.p1k chr02 161 534 1485 1858 F 374 79.68 1233 reject_low 122 ALIGNMENT 96 Y12-15o03.p1k chr16 209 534 1494 1819 F 326 77.30 1233 reject_low 187 ALIGNMENT 160 Y12-15o03.p1k chr12 334 11 1076265 1076588 C 324 83.95 1233|9,0 reject_low 309 ALIGNMENT 0 Y12-15o03.p1k chr16 814 227 945963 945962 C 588 0.00 1233 reject_low 136 ALIGNMENT 0 Y12-15o03.p1k chr06 535 814 1085 1084 F 280 0.00 1233 reject_low 247 ALIGNMENT 75 Y12-15o03.p1k chr02 245 515 1497 1767 F 271 76.75 1233 reject_low 234 ALIGNMENT 250 Y12-15o03.p1k chr02 16 530 1772 2286 F 515 83.69 1233 reject_low 22 ALIGNMENT 0 Y12-15o03.p1k chr10 139 814 2365 2364 F 676 0.00 1233 reject_low 285 ALIGNMENT 0 Y12-15o03.p1k chr14 479 814 1998 1997 F 336 0.00 1233 reject_low 153 ALIGNMENT 0 Y12-15o03.p1k chr13 535 814 1931 1930 F 280 0.00 1233 reject_low 217 ALIGNMENT 0 Y12-15o03.p1k chr16 535 814 1747 1746 F 280 0.00 1233 reject_low 220 ALIGNMENT 0 Y12-15o03.p1k chr05 279 814 2054 2053 F 536 0.00 1233 reject_low 168 ALIGNMENT 65 Y12-15o03.p1k chr06 89 160 892 963 F 72 97.22 1233 reject_low 244 ALIGNMENT 38 Y12-15o03.p1k chr06 460 534 903 977 F 75 84.00 1233 reject_low 272 ALIGNMENT 30 Y12-15o03.p1k chr14 353 530 1585 1762 F 178 73.03 1233 reject_low 294 ALIGNMENT 0 Y12-15o03.p1k chr02 62 269 1486 1485 F 208 0.00 1233 reject_low 243 ALIGNMENT 0 Y12-15o03.p1k chr13 335 814 2091 2090 F 480 0.00 1233 reject_low 77 ALIGNMENT 0 Y12-15o03.p1k chr12 124 136 2185 7336 F 13 0.00 1233 reject_low 17 ALIGNMENT 74 Y12-15o03.p1k chr12 317 530 1694 1907 F 214 78.97 1233 reject_low 231 ALIGNMENT 98 Y12-15o03.p1k chr08 226 29 560417 560614 C 198 83.84 1233 reject_low 179 ALIGNMENT 0 Y12-15o03.p1k chr12 479 814 2215 2214 F 336 0.00 1233 reject_low 88 ALIGNMENT 0 Y12-15o03.p1k chr16 405 814 1905 1904 F 410 0.00 1233 reject_low 30 ALIGNMENT 0 Y12-15o03.p1k chr04 814 299 1530065 1530064 C 516 0.00 1233 reject_low 52 ALIGNMENT 150 Y12-15o03.p1k chr07 370 14 1088970 1089326 C 357 81.51 1233 reject_low 97 ALIGNMENT 0 Y12-15o03.p1k chr08 484 814 1936 1935 F 331 0.00 1233 reject_low 172 ALIGNMENT 47 Y12-15o03.p1k chr16 118 29 945962 946051 C 90 84.44 1233 reject_low 261 ALIGNMENT 99 Y12-15o03.p1k chr15 534 209 1089317 1089642 C 326 77.61 1233 reject_low 177 ALIGNMENT 0 Y12-15o03.p1k chr14 535 814 1910 1909 F 280 0.00 1233 reject_low 186 ALIGNMENT 118 Y12-15o03.p1k chr12 478 65 1069602 1070015 C 414 77.05 1233 reject_low 163 ALIGNMENT 0 Y12-15o03.p1k chr09 62 160 1685 1684 F 99 0.00 1233 reject_low 173 ALIGNMENT 119 Y12-15o03.p1k chr15 226 29 1089229 1089426 C 198 87.37 1233 reject_low 140 ALIGNMENT 0 Y12-15o03.p1k chr05 814 335 574894 574893 C 480 0.00 1233 reject_low 74 ALIGNMENT 130 Y12-15o03.p1k chr08 89 376 1650 1937 F 288 82.64 1233 reject_low 137 ALIGNMENT 0 Y12-15o03.p1k chr04 160 62 1530490 1530489 C 99 0.00 1233 reject_low 159 ALIGNMENT 0 Y12-15o03.p1k chr05 537 814 1988 1987 F 278 0.00 1233 reject_low 43 ALIGNMENT 0 Y12-15o03.p1k chr07 160 62 1089396 1089395 C 99 0.00 1233 reject_low 144 ALIGNMENT 0 Y12-15o03.p1k chr14 62 316 1585 1584 F 255 0.00 1233 reject_low 279 ALIGNMENT 233 Y12-15o03.p1k chr15 404 14 1089231 1089621 C 391 87.47 1233 reject_low 35 ALIGNMENT 178 Y12-15o03.p1k chr12 11 298 7463 7750 F 288 88.19 1233 reject_low 47 ALIGNMENT 0 Y12-15o03.p1k chr04 814 371 1530065 1530064 C 444 0.00 1233 reject_low 108 ALIGNMENT 0 Y12-15o03.p1k chr02 516 814 1695 1694 F 299 0.00 1233 reject_low 245 ALIGNMENT 0 Y12-15o03.p1k chr05 160 62 575319 575318 C 99 0.00 1233 reject_low 143 ALIGNMENT 175 Y12-15o03.p1k chr12 298 11 1069602 1069889 C 288 87.85 1233 reject_low 53 ALIGNMENT 0 Y12-15o03.p1k chr09 62 244 1697 1696 F 183 0.00 1233 reject_low 188 ALIGNMENT 0 Y12-15o03.p1k chr12 405 404 2214 7700 F 0 0.00 1233 reject_low 299 ALIGNMENT 53 Y12-15o03.p1k chr05 317 530 1481 1694 F 214 75.70 1233 reject_low 246 ALIGNMENT 0 Y12-15o03.p1k chr02 62 316 1497 1496 F 255 0.00 1233 reject_low 245 ALIGNMENT 513 Y12-15o03.p1k chr15 1089 137 1088704 1089642 C 953 86.57 1233 reject_low 15 ALIGNMENT 0 Y12-15o03.p1k chr14 124 404 1968 1948 F 281 0.00 1233 reject_low 322 ALIGNMENT 0 Y12-15o03.p1k chr09 62 208 1697 1696 F 147 0.00 1233 reject_low 210 ALIGNMENT 0 Y12-15o03.p1k chr08 62 316 1662 1661 F 255 0.00 1233 reject_low 238 ALIGNMENT 0 Y12-15o03.p1k chr10 62 88 1668 1667 F 27 0.00 1233 reject_low 91 ALIGNMENT 91 Y12-15o03.p1k chr16 18 190 1735 1907 F 173 84.97 1233 reject_low 195 ALIGNMENT 0 Y12-15o03.p1k chr05 814 464 574885 574884 C 351 0.00 1233 reject_low 318 ALIGNMENT 0 Y12-15o03.p1k chr05 814 299 574894 574893 C 516 0.00 1233 reject_low 45 ALIGNMENT 0 Y12-15o03.p1k chr10 537 814 2223 2222 F 278 0.00 1233 reject_low 32 ALIGNMENT 145 Y12-15o03.p1k chr02 137 534 1497 1894 F 398 79.65 1233 reject_low 114 ALIGNMENT 0 Y12-15o03.p1k chr15 814 464 1089221 1089220 C 351 0.00 1233 reject_low 327 ALIGNMENT 0 Y12-15o03.p1k chr05 814 263 574894 574893 C 552 0.00 1233 reject_low 57 ALIGNMENT 0 Y12-15o03.p1k chr12 254 253 2207 7345 F 0 0.00 1233 reject_low 300 ALIGNMENT 0 Y12-15o03.p1k chr09 355 814 2382 2381 F 460 0.00 1233 reject_low 115 ALIGNMENT 0 Y12-15o03.p1k chr14 299 814 1998 1997 F 516 0.00 1233 reject_low 49 ALIGNMENT 91 Y12-15o03.p1k chr16 190 18 945962 946134 C 173 84.97 1233 reject_low 196 ALIGNMENT 0 Y12-15o03.p1k chr08 136 62 560831 560830 C 75 0.00 1233 reject_low 5 ALIGNMENT 91 Y12-15o03.p1k chr05 190 18 574893 575065 C 173 84.97 1233 reject_low 190 ALIGNMENT 0 Y12-15o03.p1k chr08 814 531 560582 560581 C 284 0.00 1233 reject_low 221 ALIGNMENT 45 Y12-15o03.p1k chr10 353 530 1680 1857 F 178 75.84 1233 reject_low 267 ALIGNMENT 0 Y12-15o03.p1k chr12 814 531 1069839 1069838 C 284 0.00 1233 reject_low 312 ALIGNMENT 0 Y12-15o03.p1k chr05 404 124 574943 574923 C 281 0.00 1233 reject_low 318 ALIGNMENT 147 Y12-15o03.p1k chr15 370 14 1089229 1089585 C 357 81.23 1233 reject_low 110 ALIGNMENT 72 Y12-15o03.p1k chr12 245 530 1694 1979 F 286 75.87 1233 reject_low 239 ALIGNMENT 42 Y12-15o03.p1k chr08 534 317 560613 560830 C 218 73.85 1233 reject_low 276 ALIGNMENT 0 Y12-15o03.p1k chr10 62 244 1680 1679 F 183 0.00 1233 reject_low 189 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 7698 7697 F 280 0.00 1233 reject_low 305 ALIGNMENT 0 Y12-15o03.p1k chr16 531 814 1671 1670 F 284 0.00 1233 reject_low 296 ALIGNMENT 0 Y12-15o03.p1k chr05 814 479 574894 574893 C 336 0.00 1233 reject_low 149 ALIGNMENT 82 Y12-15o03.p1k chr16 270 534 1483 1747 F 265 77.74 1233 reject_low 220 ALIGNMENT 0 Y12-15o03.p1k chr09 429 814 2384 2383 F 386 0.00 1233 reject_low 64 ALIGNMENT 160 Y12-15o03.p1k chr08 298 11 560417 560704 C 288 86.11 1233 reject_low 80 ALIGNMENT 96 Y12-15o03.p1k chr12 209 534 7337 7662 F 326 77.30 1233|9,0 reject_low 306 ALIGNMENT 570 Y12-15o03.p1k chr16 1089 18 945437 946494 C 1072 86.19 1233 reject_low 6 ALIGNMENT 0 Y12-15o03.p1k chr15 814 119 1089230 1089229 C 696 0.00 1233 reject_low 259 ALIGNMENT 150 Y12-15o03.p1k chr12 14 370 7394 7750 F 357 81.51 1233 reject_low 98 ALIGNMENT 0 Y12-15o03.p1k chr07 136 62 1089384 1089383 C 75 0.00 1233 reject_low 10 ALIGNMENT 0 Y12-15o03.p1k chr10 62 160 1668 1667 F 99 0.00 1233 reject_low 174 ALIGNMENT 47 Y12-15o03.p1k chr13 29 118 2002 2091 F 90 84.44 1233 reject_low 257 ALIGNMENT 0 Y12-15o03.p1k chr06 393 814 1267 1266 F 422 0.00 1233 reject_low 89 ALIGNMENT 0 Y12-15o03.p1k chr08 464 814 1952 1951 F 351 0.00 1233 reject_low 94 ALIGNMENT 102 Y12-15o03.p1k chr09 161 530 1685 2054 F 370 76.76 1233 reject_low 173 ALIGNMENT 0 Y12-15o03.p1k chr06 211 814 1265 1264 F 604 0.00 1233 reject_low 263 ALIGNMENT 0 Y12-15o03.p1k chr07 814 335 1088971 1088970 C 480 0.00 1233 reject_low 75 ALIGNMENT 40 Y12-15o03.p1k chr05 18 174 1902 2058 F 157 75.80 1233 reject_low 282 ALIGNMENT 0 Y12-15o03.p1k chr12 160 62 1076691 1076690 C 99 0.00 1233 reject_low 160 ALIGNMENT 118 Y12-15o03.p1k chr15 478 65 1089229 1089642 C 414 77.05 1233 reject_low 165 ALIGNMENT 0 Y12-15o03.p1k chr15 208 62 1089643 1089642 C 147 0.00 1233 reject_low 177 ALIGNMENT 42 Y12-15o03.p1k chr13 317 534 1678 1895 F 218 73.85 1233 reject_low 278 ALIGNMENT 0 Y12-15o03.p1k chr12 814 531 1069731 1069730 C 284 0.00 1233 reject_low 301 ALIGNMENT 163 Y12-15o03.p1k chr07 334 11 1088970 1089293 C 324 84.26 1233 reject_low 75 ALIGNMENT 132 Y12-15o03.p1k chr08 370 14 560417 560773 C 357 79.83 1233 reject_low 123 ALIGNMENT 576 Y12-15o03.p1k chr02 14 1089 1914 2940 F 1076 87.36 1233 reject_low 4 ALIGNMENT 0 Y12-15o03.p1k chr04 814 119 1530065 1530064 C 696 0.00 1233 reject_low 251 ALIGNMENT 0 Y12-15o03.p1k chr15 814 531 1089466 1089465 C 284 0.00 1233 reject_low 295 ALIGNMENT 77 Y12-15o03.p1k chr16 530 317 946270 946483 C 214 79.44 1233 reject_low 226 ALIGNMENT 0 Y12-15o03.p1k chr16 191 814 1907 1906 F 624 0.00 1233 reject_low 195 ALIGNMENT 161 Y12-15o03.p1k chr02 29 370 2073 2414 F 342 83.04 1233 reject_low 93 ALIGNMENT 0 Y12-15o03.p1k chr12 227 814 7750 7749 F 588 0.00 1233 reject_low 132 ALIGNMENT 121 Y12-15o03.p1k chr05 478 65 574893 575306 C 414 77.29 1233 reject_low 149 ALIGNMENT 121 Y12-15o03.p1k chr12 65 478 7337 7750 F 414 77.29 1233 reject_low 151 ALIGNMENT 139 Y12-15o03.p1k chr08 334 11 560417 560740 C 324 81.79 1233 reject_low 117 ALIGNMENT 160 Y12-15o03.p1k chr04 334 11 1530064 1530387 C 324 83.95 1233 reject_low 82 ALIGNMENT 87 Y12-15o03.p1k chr10 209 534 1680 2005 F 326 76.38 1233 reject_low 211 ALIGNMENT 0 Y12-15o03.p1k chr02 516 814 1767 1766 F 299 0.00 1233 reject_low 234 ALIGNMENT 0 Y12-15o03.p1k chr13 479 814 2091 2090 F 336 0.00 1233 reject_low 152 ALIGNMENT 91 Y12-15o03.p1k chr07 190 18 1088970 1089142 C 173 84.97 1233 reject_low 191 ALIGNMENT 93 Y12-15o03.p1k chr13 14 123 1951 2060 F 110 95.45 1233 reject_low 321 ALIGNMENT 0 Y12-15o03.p1k chr15 404 124 1089279 1089259 C 281 0.00 1233 reject_low 327 ALIGNMENT 0 Y12-15o03.p1k chr14 62 269 1574 1573 F 208 0.00 1233 reject_low 218 ALIGNMENT 567 Y12-15o03.p1k chr12 18 1089 1683 2740 F 1072 86.10 1233 reject_low 8 ALIGNMENT 0 Y12-15o03.p1k chr12 404 405 1069652 1076266 C 0 0.00 1233 reject_low 302 ALIGNMENT 0 Y12-15o03.p1k chr12 814 371 1069603 1069602 C 444 0.00 1233 reject_low 109 ALIGNMENT 119 Y12-15o03.p1k chr12 226 29 1069602 1069799 C 198 87.37 1233 reject_low 139 ALIGNMENT 0 Y12-15o03.p1k chr02 537 814 2004 2003 F 278 0.00 1233 reject_low 38 ALIGNMENT 178 Y12-15o03.p1k chr07 298 11 1088970 1089257 C 288 88.19 1233 reject_low 46 ALIGNMENT 0 Y12-15o03.p1k chr08 304 814 1900 1899 F 511 0.00 1233 reject_low 156 ALIGNMENT 0 Y12-15o03.p1k chr09 62 88 1685 1684 F 27 0.00 1233 reject_low 90 ALIGNMENT 163 Y12-15o03.p1k chr16 11 334 1584 1907 F 324 84.26 1233 reject_low 79 ALIGNMENT 209 Y12-15o03.p1k chr02 18 536 1486 2004 F 519 80.92 1233 reject_low 38 ALIGNMENT 269 Y12-15o03.p1k chr02 11 530 1731 2250 F 520 84.81 1233 reject_low 19 ALIGNMENT 118 Y12-15o03.p1k chr12 478 65 1076265 1076678 C 414 77.05 1233 reject_low 164 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1076426 1076425 C 280 0.00 1233 reject_low 216 ALIGNMENT 0 Y12-15o03.p1k chr02 191 814 2414 2413 F 624 0.00 1233 reject_low 169 ALIGNMENT 118 Y12-15o03.p1k chr07 534 161 1089022 1089395 C 374 78.07 1233 reject_low 144 ALIGNMENT 125 Y12-15o03.p1k chr08 14 268 1683 1937 F 255 83.92 1233 reject_low 125 ALIGNMENT 0 Y12-15o03.p1k chr15 814 479 1089230 1089229 C 336 0.00 1233 reject_low 165 ALIGNMENT 0 Y12-15o03.p1k chr15 814 405 1089232 1089231 C 410 0.00 1233 reject_low 35 ALIGNMENT 0 Y12-15o03.p1k chr12 208 62 1076679 1076678 C 147 0.00 1233 reject_low 176 ALIGNMENT 519 Y12-15o03.p1k chr12 137 1089 7337 8275 F 953 86.78 1233 reject_low 17 ALIGNMENT 42 Y12-15o03.p1k chr12 317 534 7337 7554 F 218 73.85 1233|9,0 reject_low 303,310 ALIGNMENT 163 Y12-15o03.p1k chr12 11 334 7427 7750 F 324 84.26 1233 reject_low 76 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 1822 1821 F 280 0.00 1233 reject_low 227 ALIGNMENT 115 Y12-15o03.p1k chr02 89 536 1485 1932 F 448 76.12 1233 reject_low 155 ALIGNMENT 102 Y12-15o03.p1k chr05 209 534 1481 1806 F 326 77.91 1233 reject_low 171 ALIGNMENT 0 Y12-15o03.p1k chr12 299 814 7750 7749 F 516 0.00 1233 reject_low 47 ALIGNMENT 165 Y12-15o03.p1k chr16 262 11 945962 946213 C 252 89.29 1233 reject_low 63 ALIGNMENT 0 Y12-15o03.p1k chr16 535 814 1855 1854 F 280 0.00 1233 reject_low 148 ALIGNMENT 0 Y12-15o03.p1k chr13 62 316 1678 1677 F 255 0.00 1233 reject_low 278 ALIGNMENT 0 Y12-15o03.p1k chr09 247 814 2382 2381 F 568 0.00 1233 reject_low 236 ALIGNMENT 0 Y12-15o03.p1k chr12 814 479 1076266 1076265 C 336 0.00 1233 reject_low 164 ALIGNMENT 0 Y12-15o03.p1k chr05 535 814 1914 1913 F 280 0.00 1233 reject_low 129 ALIGNMENT 42 Y12-15o03.p1k chr15 534 317 1089425 1089642 C 218 73.85 1233 reject_low 280 ALIGNMENT 176 Y12-15o03.p1k chr10 14 428 1953 2367 F 415 81.69 1233 reject_low 65 ALIGNMENT 0 Y12-15o03.p1k chr12 119 269 2216 7325 F 151 0.00 1233 reject_low 317 ALIGNMENT 0 Y12-15o03.p1k chr16 316 62 946484 946483 C 255 0.00 1233 reject_low 226 ALIGNMENT 0 Y12-15o03.p1k chr12 62 208 1694 1693 F 147 0.00 1233 reject_low 224 ALIGNMENT 0 Y12-15o03.p1k chr05 244 62 575307 575306 C 183 0.00 1233 reject_low 203 ALIGNMENT 178 Y12-15o03.p1k chr05 13 392 1681 2060 F 380 83.16 1233 reject_low 55 ALIGNMENT 150 Y12-15o03.p1k chr16 14 370 1551 1907 F 357 81.51 1233 reject_low 101 ALIGNMENT 160 Y12-15o03.p1k chr10 89 530 1668 2109 F 442 79.64 1233 reject_low 91 ALIGNMENT 0 Y12-15o03.p1k chr13 535 814 1895 1894 F 280 0.00 1233 reject_low 278 ALIGNMENT 25 Y12-15o03.p1k chr15 463 405 1089220 1089278 C 59 81.36 1233 reject_low 327 ALIGNMENT 0 Y12-15o03.p1k chr08 535 814 1879 1878 F 280 0.00 1233 reject_low 238 ALIGNMENT 0 Y12-15o03.p1k chr07 208 62 1089384 1089383 C 147 0.00 1233 reject_low 183 ALIGNMENT 106 Y12-15o03.p1k chr08 209 483 1662 1936 F 275 80.36 1233 reject_low 172 ALIGNMENT 0 Y12-15o03.p1k chr07 814 191 1088971 1088970 C 624 0.00 1233 reject_low 191 ALIGNMENT 25 Y12-15o03.p1k chr13 405 463 2042 2100 F 59 81.36 1233 reject_low 321 ALIGNMENT 0 Y12-15o03.p1k chr16 62 316 1494 1493 F 255 0.00 1233 reject_low 281 ALIGNMENT 0 Y12-15o03.p1k chr12 191 814 7750 7749 F 624 0.00 1233 reject_low 192 ALIGNMENT 196 Y12-15o03.p1k chr10 14 538 1773 2309 F 525 80.38 1233 reject_low 42 ALIGNMENT 0 Y12-15o03.p1k chr04 404 124 1530114 1530094 C 281 0.00 1233 reject_low 325 ALIGNMENT 0 Y12-15o03.p1k chr08 62 208 1662 1661 F 147 0.00 1233 reject_low 172 ALIGNMENT 122 Y12-15o03.p1k chr16 29 226 1710 1907 F 198 87.88 1233 reject_low 135 ALIGNMENT 0 Y12-15o03.p1k chr02 464 814 2423 2422 F 351 0.00 1233 reject_low 315 ALIGNMENT 178 Y12-15o03.p1k chr13 11 298 1804 2091 F 288 88.19 1233 reject_low 48 ALIGNMENT 0 Y12-15o03.p1k chr07 814 371 1088971 1088970 C 444 0.00 1233 reject_low 97 ALIGNMENT 82 Y12-15o03.p1k chr12 534 270 1069762 1070026 C 265 77.74 1233 reject_low 313 ALIGNMENT 0 Y12-15o03.p1k chr02 537 814 1932 1931 F 278 0.00 1233 reject_low 155 ALIGNMENT 0 Y12-15o03.p1k chr16 814 464 945954 945953 C 351 0.00 1233 reject_low 324 ALIGNMENT 0 Y12-15o03.p1k chr12 405 814 7748 7747 F 410 0.00 1233 reject_low 27 ALIGNMENT 42 Y12-15o03.p1k chr07 534 317 1089166 1089383 C 218 73.85 1233 reject_low 275 ALIGNMENT 0 Y12-15o03.p1k chr12 136 124 1070016 1076295 C 13 0.00 1233 reject_low 18 ALIGNMENT 0 Y12-15o03.p1k chr06 62 459 903 902 F 398 0.00 1233 reject_low 272 ALIGNMENT 0 Y12-15o03.p1k chr13 263 814 2091 2090 F 552 0.00 1233 reject_low 60 ALIGNMENT 0 Y12-15o03.p1k chr12 464 814 2224 2223 F 351 0.00 1233 reject_low 297 ALIGNMENT 0 Y12-15o03.p1k chr16 160 62 946496 946495 C 99 0.00 1233 reject_low 104 ALIGNMENT 0 Y12-15o03.p1k chr12 531 814 1979 1978 F 284 0.00 1233 reject_low 239 ALIGNMENT 0 Y12-15o03.p1k chr10 531 814 2109 2108 F 284 0.00 1233 reject_low 91 ALIGNMENT 140 Y12-15o03.p1k chr02 18 478 1954 2414 F 461 77.66 1233 reject_low 120 ALIGNMENT 0 Y12-15o03.p1k chr12 814 405 1069605 1069604 C 410 0.00 1233 reject_low 34 ALIGNMENT 0 Y12-15o03.p1k chr16 404 124 946012 945992 C 281 0.00 1233 reject_low 324 ALIGNMENT 0 Y12-15o03.p1k chr16 227 814 1907 1906 F 588 0.00 1233 reject_low 135 ALIGNMENT 0 Y12-15o03.p1k chr16 814 263 945963 945962 C 552 0.00 1233 reject_low 63 ALIGNMENT 0 Y12-15o03.p1k chr05 62 352 1481 1480 F 291 0.00 1233 reject_low 287 ALIGNMENT 0 Y12-15o03.p1k chr09 393 814 2384 2383 F 422 0.00 1233 reject_low 166 ALIGNMENT 0 Y12-15o03.p1k chr12 62 316 1694 1693 F 255 0.00 1233 reject_low 231 ALIGNMENT 0 Y12-15o03.p1k chr13 62 160 1666 1665 F 99 0.00 1233 reject_low 146 ALIGNMENT 0 Y12-15o03.p1k chr12 531 814 1907 1906 F 284 0.00 1233 reject_low 231 ALIGNMENT 0 Y12-15o03.p1k chr15 814 371 1089230 1089229 C 444 0.00 1233 reject_low 110 ALIGNMENT 0 Y12-15o03.p1k chr08 814 535 560614 560613 C 280 0.00 1233 reject_low 276 ALIGNMENT 0 Y12-15o03.p1k chr05 393 814 2060 2059 F 422 0.00 1233 reject_low 55 ALIGNMENT 0 Y12-15o03.p1k chr05 62 160 1469 1468 F 99 0.00 1233 reject_low 142 ALIGNMENT 120 Y12-15o03.p1k chr05 14 246 1826 2058 F 233 84.55 1233 reject_low 128 ALIGNMENT 0 Y12-15o03.p1k chr15 814 263 1089230 1089229 C 552 0.00 1233 reject_low 69 ALIGNMENT 0 Y12-15o03.p1k chr16 814 531 946271 946270 C 284 0.00 1233 reject_low 226 ALIGNMENT 0 Y12-15o03.p1k chr02 405 814 2412 2411 F 410 0.00 1233 reject_low 20 ALIGNMENT 70 Y12-15o03.p1k chr09 270 534 1686 1950 F 265 76.23 1233 reject_low 240 ALIGNMENT 118 Y12-15o03.p1k chr16 161 534 1482 1855 F 374 78.07 1233 reject_low 148 ALIGNMENT 0 Y12-15o03.p1k chr16 814 335 945963 945962 C 480 0.00 1233 reject_low 81 ALIGNMENT 176 Y12-15o03.p1k chr09 14 428 1970 2384 F 415 81.69 1233 reject_low 64 ALIGNMENT 118 Y12-15o03.p1k chr05 534 161 574945 575318 C 374 78.07 1233 reject_low 143 ALIGNMENT 118 Y12-15o03.p1k chr04 478 65 1530064 1530477 C 414 77.05 1233 reject_low 162 ALIGNMENT 90 Y12-15o03.p1k chr12 123 14 1069633 1069742 C 110 94.55 1233 reject_low 326 ALIGNMENT 88 Y12-15o03.p1k chr04 190 18 1530064 1530236 C 173 84.39 1233 reject_low 197 ALIGNMENT 82 Y12-15o03.p1k chr05 534 270 575053 575317 C 265 77.74 1233 reject_low 214 ALIGNMENT 0 Y12-15o03.p1k chr07 814 479 1088971 1088970 C 336 0.00 1233 reject_low 150 ALIGNMENT 122 Y12-15o03.p1k chr12 29 226 7553 7750 F 198 87.88 1233 reject_low 132 ALIGNMENT 0 Y12-15o03.p1k chr05 814 371 574894 574893 C 444 0.00 1233 reject_low 96 ALIGNMENT 25 Y12-15o03.p1k chr16 405 463 1858 1916 F 59 81.36 1233 reject_low 323 ALIGNMENT 88 Y12-15o03.p1k chr12 190 18 1069602 1069774 C 173 84.39 1233 reject_low 198 ALIGNMENT 0 Y12-15o03.p1k chr12 814 464 1076257 1076256 C 351 0.00 1233 reject_low 298 ALIGNMENT 0 Y12-15o03.p1k chr16 814 535 946303 946302 C 280 0.00 1233 reject_low 265 ALIGNMENT 41 Y12-15o03.p1k chr06 64 138 1191 1265 F 75 85.33 1233 reject_low 283 ALIGNMENT 0 Y12-15o03.p1k chr08 814 227 560418 560417 C 588 0.00 1233 reject_low 179 ALIGNMENT 0 Y12-15o03.p1k chr04 136 62 1530478 1530477 C 75 0.00 1233 reject_low 13 ALIGNMENT 88 Y12-15o03.p1k chr12 190 18 1076265 1076437 C 173 84.39 1233 reject_low 313 ALIGNMENT 269 Y12-15o03.p1k chr12 11 404 1820 2213 F 394 90.36 1233 reject_low 299 ALIGNMENT 0 Y12-15o03.p1k chr04 814 405 1530067 1530066 C 410 0.00 1233 reject_low 33 ALIGNMENT 25 Y12-15o03.p1k chr12 463 405 1069593 1069651 C 59 81.36 1233 reject_low 302,326 ALIGNMENT 0 Y12-15o03.p1k chr09 535 814 2022 2021 F 280 0.00 1233 reject_low 210 ALIGNMENT 47 Y12-15o03.p1k chr08 118 29 560417 560506 C 90 84.44 1233 reject_low 254 ALIGNMENT 0 Y12-15o03.p1k chr13 531 814 1855 1854 F 284 0.00 1233 reject_low 293 ALIGNMENT 0 Y12-15o03.p1k chr09 139 814 2382 2381 F 676 0.00 1233 reject_low 284 ALIGNMENT 145 Y12-15o03.p1k chr12 161 534 1682 2055 F 374 80.48 1233 reject_low 112 ALIGNMENT 168 Y12-15o03.p1k chr10 18 534 1669 2185 F 517 78.34 1233 reject_low 71 ALIGNMENT 30 Y12-15o03.p1k chr12 530 353 1069838 1070015 C 178 73.03 1233|0,9 reject_low 312 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 2362 2361 F 280 0.00 1233 reject_low 24 ALIGNMENT 88 Y12-15o03.p1k chr15 190 18 1089229 1089401 C 173 84.39 1233 reject_low 199 ALIGNMENT 0 Y12-15o03.p1k chr13 464 814 2100 2099 F 351 0.00 1233 reject_low 321 ALIGNMENT 0 Y12-15o03.p1k chr12 371 814 7750 7749 F 444 0.00 1233 reject_low 98 ALIGNMENT 46 Y12-15o03.p1k chr16 534 353 946302 946483 C 182 75.82 1233 reject_low 265 ALIGNMENT 0 Y12-15o03.p1k chr12 404 62 1076315 1076314 C 343 0.00 1233 reject_low 298 ALIGNMENT 0 Y12-15o03.p1k chr05 814 535 575054 575053 C 280 0.00 1233 reject_low 214 ALIGNMENT 0 Y12-15o03.p1k chr05 62 88 1469 1468 F 27 0.00 1233 reject_low 129 ALIGNMENT 90 Y12-15o03.p1k chr12 245 530 7337 7622 F 286 77.97 1233|9,0 reject_low 300,311 ALIGNMENT 0 Y12-15o03.p1k chr16 136 62 946484 946483 C 75 0.00 1233 reject_low 102 ALIGNMENT 165 Y12-15o03.p1k chr05 262 11 574893 575144 C 252 89.29 1233 reject_low 57 ALIGNMENT 0 Y12-15o03.p1k chr04 814 227 1530065 1530064 C 588 0.00 1233 reject_low 138 ALIGNMENT 159 Y12-15o03.p1k chr02 65 534 1497 1966 F 470 78.72 1233 reject_low 87 ALIGNMENT 90 Y12-15o03.p1k chr12 530 245 1069730 1070015 C 286 77.97 1233|0,9 reject_low 301 ALIGNMENT 82 Y12-15o03.p1k chr15 534 270 1089389 1089653 C 265 77.74 1233 reject_low 219 ALIGNMENT 516 Y12-15o03.p1k chr07 1089 137 1088445 1089383 C 953 86.67 1233 reject_low 10 ALIGNMENT 0 Y12-15o03.p1k chr12 124 404 7720 7700 F 281 0.00 1233 reject_low 320 ALIGNMENT 0 Y12-15o03.p1k chr08 814 531 560546 560545 C 284 0.00 1233 reject_low 225 ALIGNMENT 141 Y12-15o03.p1k chr08 262 11 560417 560668 C 252 86.11 1233 reject_low 95 ALIGNMENT 118 Y12-15o03.p1k chr13 161 534 1666 2039 F 374 78.07 1233 reject_low 146 ALIGNMENT 0 Y12-15o03.p1k chr08 62 88 1650 1649 F 27 0.00 1233 reject_low 137 ALIGNMENT 0 Y12-15o03.p1k chr12 464 814 7759 7758 F 351 0.00 1233 reject_low 299,320 ALIGNMENT 0 Y12-15o03.p1k chr08 814 405 560420 560419 C 410 0.00 1233 reject_low 40 ALIGNMENT 0 Y12-15o03.p1k chr05 352 62 575307 575306 C 291 0.00 1233 reject_low 289 ALIGNMENT 47 Y12-15o03.p1k chr12 29 118 2126 2215 F 90 84.44 1233 reject_low 317 ALIGNMENT 90 Y12-15o03.p1k chr12 530 245 1076393 1076678 C 286 77.97 1233 reject_low 205 ALIGNMENT 0 Y12-15o03.p1k chr10 535 814 1933 1932 F 280 0.00 1233 reject_low 241 ALIGNMENT 99 Y12-15o03.p1k chr12 534 209 1069690 1070015 C 326 77.61 1233|0,9 reject_low 307 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1076318 1076317 C 280 0.00 1233 reject_low 160 ALIGNMENT 77 Y12-15o03.p1k chr05 270 530 1470 1730 F 261 77.39 1233 reject_low 229 ALIGNMENT 84 Y12-15o03.p1k chr16 534 209 946158 946483 C 326 76.07 1233 reject_low 212 ALIGNMENT 0 Y12-15o03.p1k chr06 537 814 1123 1122 F 278 0.00 1233 reject_low 200 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1076354 1076353 C 280 0.00 1233 reject_low 176 ALIGNMENT 83 Y12-15o03.p1k chr08 530 270 560581 560841 C 261 78.16 1233 reject_low 221 ALIGNMENT 0 Y12-15o03.p1k chr13 531 814 1963 1962 F 284 0.00 1233 reject_low 206 ALIGNMENT 0 Y12-15o03.p1k chr12 814 479 1069603 1069602 C 336 0.00 1233 reject_low 163 ALIGNMENT 0 Y12-15o03.p1k chr06 62 88 892 891 F 27 0.00 1233 reject_low 244 ALIGNMENT 115 Y12-15o03.p1k chr10 29 392 2004 2367 F 364 78.02 1233 reject_low 167 ALIGNMENT 159 Y12-15o03.p1k chr08 161 463 1650 1952 F 303 85.15 1233 reject_low 94 ALIGNMENT 217 Y12-15o03.p1k chr02 29 530 1677 2178 F 502 81.87 1233 reject_low 36 ALIGNMENT 90 Y12-15o03.p1k chr14 245 530 1585 1870 F 286 77.97 1233 reject_low 207 ALIGNMENT 0 Y12-15o03.p1k chr05 316 62 575307 575306 C 255 0.00 1233 reject_low 274 ALIGNMENT 25 Y12-15o03.p1k chr16 463 405 945953 946011 C 59 81.36 1233 reject_low 324 ALIGNMENT 516 Y12-15o03.p1k chr16 137 1089 1494 2432 F 953 86.67 1233 reject_low 12 ALIGNMENT 0 Y12-15o03.p1k chr14 531 814 1870 1869 F 284 0.00 1233 reject_low 207 ALIGNMENT 0 Y12-15o03.p1k chr12 352 62 1076679 1076678 C 291 0.00 1233 reject_low 292 ALIGNMENT 0 Y12-15o03.p1k chr12 814 263 1069603 1069602 C 552 0.00 1233 reject_low 68 ALIGNMENT 94 Y12-15o03.p1k chr08 478 65 560417 560830 C 414 75.12 1233 reject_low 201 ALIGNMENT 95 Y12-15o03.p1k chr02 11 123 2271 2383 F 113 95.58 1233 reject_low 315 ALIGNMENT 0 Y12-15o03.p1k chr04 814 531 1530301 1530300 C 284 0.00 1233 reject_low 288 ALIGNMENT 96 Y12-15o03.p1k chr14 209 534 1585 1910 F 326 77.30 1233 reject_low 186 ALIGNMENT 68 Y12-15o03.p1k chr02 270 530 1486 1746 F 261 76.25 1233 reject_low 243 ALIGNMENT 145 Y12-15o03.p1k chr05 65 536 1481 1952 F 472 77.75 1233 reject_low 106 ALIGNMENT 178 Y12-15o03.p1k chr05 298 11 574893 575180 C 288 88.19 1233 reject_low 45 ALIGNMENT 163 Y12-15o03.p1k chr05 334 11 574893 575216 C 324 84.26 1233 reject_low 74 ALIGNMENT 0 Y12-15o03.p1k chr12 404 124 1069652 1069632 C 281 0.00 1233 reject_low 326 ALIGNMENT 82 Y12-15o03.p1k chr12 270 534 7326 7590 F 265 77.74 1233 reject_low 317 ALIGNMENT 221 Y12-15o03.p1k chr09 11 536 1715 2240 F 526 81.56 1233 reject_low 31 ALIGNMENT 0 Y12-15o03.p1k chr08 377 814 1937 1936 F 438 0.00 1233 reject_low 137 ALIGNMENT 96 Y12-15o03.p1k chr10 245 530 1680 1965 F 286 78.67 1233 reject_low 189 ALIGNMENT 47 Y12-15o03.p1k chr15 118 29 1089229 1089318 C 90 84.44 1233 reject_low 259 ALIGNMENT 0 Y12-15o03.p1k chr16 263 814 1907 1906 F 552 0.00 1233 reject_low 62 ALIGNMENT 236 Y12-15o03.p1k chr14 14 404 1606 1996 F 391 87.72 1233 reject_low 29 ALIGNMENT 96 Y12-15o03.p1k chr13 209 534 1678 2003 F 326 77.30 1233 reject_low 185 ALIGNMENT 147 Y12-15o03.p1k chr12 370 14 1069602 1069958 C 357 81.23 1233 reject_low 109 ALIGNMENT 0 Y12-15o03.p1k chr15 136 62 1089643 1089642 C 75 0.00 1233 reject_low 15 ALIGNMENT 0 Y12-15o03.p1k chr12 62 160 1682 1681 F 99 0.00 1233 reject_low 112 ALIGNMENT 0 Y12-15o03.p1k chr10 535 814 2185 2184 F 280 0.00 1233 reject_low 71 ALIGNMENT 0 Y12-15o03.p1k chr07 814 299 1088971 1088970 C 516 0.00 1233 reject_low 46 ALIGNMENT 433 Y12-15o03.p1k chr08 245 1016 1662 2410 F 772 87.69 1233 reject_low 16 ALIGNMENT 0 Y12-15o03.p1k chr02 531 814 2286 2285 F 284 0.00 1233 reject_low 22 ALIGNMENT 169 Y12-15o03.p1k chr02 14 334 2094 2414 F 321 85.05 1233 reject_low 72 ALIGNMENT 0 Y12-15o03.p1k chr08 277 814 1909 1908 F 538 0.00 1233 reject_low 92 ALIGNMENT 0 Y12-15o03.p1k chr05 535 814 1806 1805 F 280 0.00 1233 reject_low 171 ALIGNMENT 25 Y12-15o03.p1k chr14 405 463 1949 2007 F 59 81.36 1233 reject_low 322 ALIGNMENT 0 Y12-15o03.p1k chr16 814 535 946015 946014 C 280 0.00 1233 reject_low 56 ALIGNMENT 0 Y12-15o03.p1k chr07 404 124 1089020 1089000 C 281 0.00 1233 reject_low 319 ALIGNMENT 0 Y12-15o03.p1k chr07 814 119 1088971 1088970 C 696 0.00 1233 reject_low 253 ALIGNMENT 176 Y12-15o03.p1k chr06 59 428 898 1267 F 370 83.51 1233 reject_low 73 ALIGNMENT 62 Y12-15o03.p1k chr08 353 538 1662 1847 F 186 78.49 1233 reject_low 235 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 1875 1874 F 280 0.00 1233 reject_low 264 ALIGNMENT 523 Y12-15o03.p1k chr08 1089 137 559891 560830 C 953 87.09 1233 reject_low 5 ALIGNMENT 0 Y12-15o03.p1k chr04 814 535 1530117 1530116 C 280 0.00 1233 reject_low 159 ALIGNMENT 39 Y12-15o03.p1k chr02 353 524 1497 1668 F 172 75.00 1233 reject_low 286 ALIGNMENT 0 Y12-15o03.p1k chr08 814 479 560418 560417 C 336 0.00 1233 reject_low 201 ALIGNMENT 177 Y12-15o03.p1k chr16 534 65 946014 946483 C 470 80.00 1233 reject_low 56 ALIGNMENT 166 Y12-15o03.p1k chr16 334 14 945962 946282 C 321 84.74 1233 reject_low 81 ALIGNMENT 165 Y12-15o03.p1k chr07 262 11 1088970 1089221 C 252 89.29 1233 reject_low 58 ALIGNMENT 0 Y12-15o03.p1k chr08 352 62 560831 560830 C 291 0.00 1233 reject_low 291 ALIGNMENT 0 Y12-15o03.p1k chr16 814 405 945965 945964 C 410 0.00 1233 reject_low 21 ALIGNMENT 48 Y12-15o03.p1k chr06 18 210 1073 1265 F 193 75.65 1233 reject_low 263 ALIGNMENT 69 Y12-15o03.p1k chr08 317 534 1662 1879 F 218 77.98 1233 reject_low 238 ALIGNMENT 155 Y12-15o03.p1k chr12 11 478 1748 2215 F 468 78.63 1233 reject_low 88 ALIGNMENT 0 Y12-15o03.p1k chr05 525 814 1760 1759 F 290 0.00 1233 reject_low 222 ALIGNMENT 240 Y12-15o03.p1k chr02 18 534 1846 2362 F 517 82.98 1233 reject_low 24 ALIGNMENT 196 Y12-15o03.p1k chr09 14 538 1790 2326 F 525 80.38 1233 reject_low 41 ALIGNMENT 513 Y12-15o03.p1k chr04 1089 137 1529539 1530477 C 953 86.57 1233 reject_low 13 ALIGNMENT 0 Y12-15o03.p1k chr10 62 136 1680 1679 F 75 0.00 1233 reject_low 181 ALIGNMENT 118 Y12-15o03.p1k chr12 161 534 7325 7698 F 374 78.07 1233 reject_low 305 ALIGNMENT 123 Y12-15o03.p1k chr09 14 278 2114 2378 F 265 83.02 1233 reject_low 126 ALIGNMENT 0 Y12-15o03.p1k chr12 62 269 1683 1682 F 208 0.00 1233 reject_low 233 ALIGNMENT 0 Y12-15o03.p1k chr08 124 814 1900 1899 F 691 0.00 1233 reject_low 223 ALIGNMENT 122 Y12-15o03.p1k chr07 226 29 1088970 1089167 C 198 87.88 1233 reject_low 131 ALIGNMENT 0 Y12-15o03.p1k chr04 814 464 1530056 1530055 C 351 0.00 1233 reject_low 325 ALIGNMENT 150 Y12-15o03.p1k chr14 14 370 1642 1998 F 357 81.51 1233 reject_low 100 ALIGNMENT 81 Y12-15o03.p1k chr12 209 534 1694 2019 F 326 75.77 1233 reject_low 224 ALIGNMENT 0 Y12-15o03.p1k chr14 464 814 2007 2006 F 351 0.00 1233 reject_low 322 ALIGNMENT 233 Y12-15o03.p1k chr12 404 14 1076267 1076657 C 391 87.47 1233 reject_low 302 ALIGNMENT 0 Y12-15o03.p1k chr09 279 814 2378 2377 F 536 0.00 1233 reject_low 126 ALIGNMENT 0 Y12-15o03.p1k chr15 814 535 1089390 1089389 C 280 0.00 1233 reject_low 219 ALIGNMENT 0 Y12-15o03.p1k chr07 814 405 1088973 1088972 C 410 0.00 1233 reject_low 26 ALIGNMENT 0 Y12-15o03.p1k chr16 814 299 945963 945962 C 516 0.00 1233 reject_low 51 ALIGNMENT 34 Y12-15o03.p1k chr05 353 534 1481 1662 F 182 73.63 1233 reject_low 287 ALIGNMENT 91 Y12-15o03.p1k chr12 18 190 7578 7750 F 173 84.97 1233 reject_low 192 ALIGNMENT 47 Y12-15o03.p1k chr05 118 29 574893 574982 C 90 84.44 1233 reject_low 252 ALIGNMENT 110 Y12-15o03.p1k chr06 270 536 893 1159 F 267 81.27 1233 reject_low 157 ALIGNMENT 147 Y12-15o03.p1k chr12 137 530 1694 2087 F 394 79.95 1233 reject_low 111 ALIGNMENT 90 Y12-15o03.p1k chr13 245 530 1678 1963 F 286 77.97 1233 reject_low 206 ALIGNMENT 221 Y12-15o03.p1k chr10 11 536 1698 2223 F 526 81.56 1233 reject_low 32 ALIGNMENT 42 Y12-15o03.p1k chr14 317 534 1585 1802 F 218 73.85 1233 reject_low 279 ALIGNMENT 0 Y12-15o03.p1k chr02 531 814 2178 2177 F 284 0.00 1233 reject_low 36 ALIGNMENT 0 Y12-15o03.p1k chr12 316 299 1070016 1076264 C 18 0.00 1233 reject_low 304 ALIGNMENT 0 Y12-15o03.p1k chr14 191 814 1998 1997 F 624 0.00 1233 reject_low 194 ALIGNMENT 0 Y12-15o03.p1k chr07 269 62 1089395 1089394 C 208 0.00 1233 reject_low 215 ALIGNMENT 30 Y12-15o03.p1k chr15 530 353 1089465 1089642 C 178 73.03 1233 reject_low 295 ALIGNMENT 0 Y12-15o03.p1k chr04 269 62 1530489 1530488 C 208 0.00 1233 reject_low 213 ALIGNMENT 123 Y12-15o03.p1k chr08 11 195 1752 1936 F 185 89.73 1233 reject_low 121 ALIGNMENT 99 Y12-15o03.p1k chr10 137 530 1680 2073 F 394 75.89 1233 reject_low 181 ALIGNMENT 0 Y12-15o03.p1k chr05 535 814 1662 1661 F 280 0.00 1233 reject_low 287 ALIGNMENT 47 Y12-15o03.p1k chr02 29 118 2325 2414 F 90 84.44 1233 reject_low 250 ALIGNMENT 238 Y12-15o03.p1k chr02 11 534 1623 2146 F 524 82.63 1233 reject_low 23 ALIGNMENT 0 Y12-15o03.p1k chr16 814 535 946159 946158 C 280 0.00 1233 reject_low 212 ALIGNMENT 0 Y12-15o03.p1k chr04 208 62 1530478 1530477 C 147 0.00 1233 reject_low 175 ALIGNMENT 0 Y12-15o03.p1k chr02 335 814 2414 2413 F 480 0.00 1233 reject_low 72 ALIGNMENT 0 Y12-15o03.p1k chr10 247 814 2365 2364 F 568 0.00 1233 reject_low 237 ALIGNMENT 0 Y12-15o03.p1k chr15 814 535 1089318 1089317 C 280 0.00 1233 reject_low 177 ALIGNMENT 30 Y12-15o03.p1k chr08 530 353 560653 560830 C 178 73.03 1233 reject_low 291 ALIGNMENT 0 Y12-15o03.p1k chr05 814 191 574894 574893 C 624 0.00 1233 reject_low 190 ALIGNMENT 0 Y12-15o03.p1k chr02 62 136 1497 1496 F 75 0.00 1233 reject_low 114 ALIGNMENT 47 Y12-15o03.p1k chr14 29 118 1909 1998 F 90 84.44 1233 reject_low 258 ALIGNMENT 0 Y12-15o03.p1k chr06 279 814 1261 1260 F 536 0.00 1233 reject_low 124 ALIGNMENT 658 Y12-15o03.p1k chr05 11 1017 1535 2526 F 1007 89.67 1233 ambiguous_tel 3 ALIGNMENT 0 Y12-15o03.p1k chr10 355 814 2365 2364 F 460 0.00 1233 reject_low 116 ALIGNMENT 130 Y12-15o03.p1k chr08 14 195 1719 1900 F 182 91.21 1233 reject_low 119 ALIGNMENT 0 Y12-15o03.p1k chr16 531 814 1779 1778 F 284 0.00 1233 reject_low 209 ALIGNMENT 147 Y12-15o03.p1k chr04 370 14 1530064 1530420 C 357 81.23 1233 reject_low 108 ALIGNMENT 181 Y12-15o03.p1k chr02 11 534 1695 2218 F 524 79.01 1233 reject_low 44 ALIGNMENT 0 Y12-15o03.p1k chr12 361 362 1070007 1076273 C 0 0.00 1233 reject_low 312 ALIGNMENT 0 Y12-15o03.p1k chr13 227 814 2091 2090 F 588 0.00 1233 reject_low 133 ALIGNMENT 0 Y12-15o03.p1k chr13 371 814 2091 2090 F 444 0.00 1233 reject_low 99 ALIGNMENT 0 Y12-15o03.p1k chr13 124 404 2061 2041 F 281 0.00 1233 reject_low 321 ALIGNMENT 76 Y12-15o03.p1k chr08 29 123 1806 1900 F 95 93.68 1233 reject_low 223 ALIGNMENT 0 Y12-15o03.p1k chr12 335 814 7750 7749 F 480 0.00 1233 reject_low 76 ALIGNMENT 142 Y12-15o03.p1k chr05 11 428 1643 2060 F 418 78.95 1233 reject_low 113 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1069691 1069690 C 280 0.00 1233 reject_low 307 ALIGNMENT 165 Y12-15o03.p1k chr13 11 262 1840 2091 F 252 89.29 1233 reject_low 60 ALIGNMENT 25 Y12-15o03.p1k chr08 463 405 560408 560466 C 59 81.36 1233 reject_low 316 ALIGNMENT 162 Y12-15o03.p1k chr15 262 11 1089229 1089480 C 252 88.89 1233 reject_low 69 ALIGNMENT 0 Y12-15o03.p1k chr02 263 814 2414 2413 F 552 0.00 1233 reject_low 118 ALIGNMENT 0 Y12-15o03.p1k chr12 814 335 1069603 1069602 C 480 0.00 1233 reject_low 83 ALIGNMENT 513 Y12-15o03.p1k chr12 1089 137 1075740 1076678 C 953 86.57 1233 reject_low 14 ALIGNMENT 96 Y12-15o03.p1k chr07 534 209 1089058 1089383 C 326 77.30 1233 reject_low 183 ALIGNMENT 0 Y12-15o03.p1k chr15 814 531 1089358 1089357 C 284 0.00 1233 reject_low 208 ALIGNMENT 0 Y12-15o03.p1k chr09 62 136 1697 1696 F 75 0.00 1233 reject_low 180 ALIGNMENT 25 Y12-15o03.p1k chr02 405 463 2365 2423 F 59 81.36 1233 reject_low 315 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 2055 2054 F 280 0.00 1233 reject_low 112 ALIGNMENT 45 Y12-15o03.p1k chr09 18 210 2190 2382 F 193 75.13 1233 reject_low 269 ALIGNMENT 30 Y12-15o03.p1k chr12 530 353 1076501 1076678 C 178 73.03 1233 reject_low 292 ALIGNMENT 0 Y12-15o03.p1k chr13 62 244 1678 1677 F 183 0.00 1233 reject_low 206 ALIGNMENT 0 Y12-15o03.p1k chr06 355 814 1265 1264 F 460 0.00 1233 reject_low 107 ALIGNMENT 174 Y12-15o03.p1k chr12 65 534 1694 2163 F 470 79.79 1233 reject_low 66 ALIGNMENT 0 Y12-15o03.p1k chr12 814 464 1069594 1069593 C 351 0.00 1233 reject_low 302,326 ALIGNMENT 125 Y12-15o03.p1k chr05 89 534 1469 1914 F 446 76.91 1233 reject_low 129 ALIGNMENT 121 Y12-15o03.p1k chr07 478 65 1088970 1089383 C 414 77.29 1233 reject_low 150 ALIGNMENT 0 Y12-15o03.p1k chr05 814 227 574894 574893 C 588 0.00 1233 reject_low 130 ALIGNMENT 90 Y12-15o03.p1k chr04 123 14 1530095 1530204 C 110 94.55 1233 reject_low 325 ALIGNMENT 175 Y12-15o03.p1k chr15 298 11 1089229 1089516 C 288 87.85 1233 reject_low 54 ALIGNMENT 82 Y12-15o03.p1k chr12 534 270 1076425 1076689 C 265 77.74 1233 reject_low 216 ALIGNMENT 0 Y12-15o03.p1k chr06 161 814 963 962 F 654 0.00 1233 reject_low 244 ALIGNMENT 0 Y12-15o03.p1k chr15 814 191 1089230 1089229 C 624 0.00 1233 reject_low 199 ALIGNMENT 47 Y12-15o03.p1k chr12 118 29 1069602 1069691 C 90 84.44 1233 reject_low 256 ALIGNMENT 0 Y12-15o03.p1k chr13 62 352 1678 1677 F 291 0.00 1233 reject_low 293 ALIGNMENT 0 Y12-15o03.p1k chr09 531 814 1982 1981 F 284 0.00 1233 reject_low 188 ALIGNMENT 0 Y12-15o03.p1k chr05 269 62 575318 575317 C 208 0.00 1233 reject_low 214 ALIGNMENT 0 Y12-15o03.p1k chr07 814 535 1089023 1089022 C 280 0.00 1233 reject_low 144 ALIGNMENT 0 Y12-15o03.p1k chr09 531 814 2090 2089 F 284 0.00 1233 reject_low 180 ALIGNMENT 0 Y12-15o03.p1k chr16 535 814 1711 1710 F 280 0.00 1233 reject_low 281 ALIGNMENT 101 Y12-15o03.p1k chr08 190 14 560417 560593 C 177 86.44 1233 reject_low 170 ALIGNMENT 30 Y12-15o03.p1k chr16 353 530 1494 1671 F 178 73.03 1233 reject_low 296 ALIGNMENT 0 Y12-15o03.p1k chr04 814 479 1530065 1530064 C 336 0.00 1233 reject_low 162 ALIGNMENT 25 Y12-15o03.p1k chr04 463 405 1530055 1530113 C 59 81.36 1233 reject_low 325 ALIGNMENT 0 Y12-15o03.p1k chr12 516 814 1928 1927 F 299 0.00 1233 reject_low 233 ALIGNMENT 158 Y12-15o03.p1k chr16 478 11 945962 946429 C 468 78.85 1233 reject_low 85 ALIGNMENT 0 Y12-15o03.p1k chr12 124 160 2185 7324 F 37 0.00 1233 reject_low 305 ALIGNMENT 0 Y12-15o03.p1k chr02 531 814 1746 1745 F 284 0.00 1233 reject_low 243 ALIGNMENT 0 Y12-15o03.p1k chr16 62 269 1483 1482 F 208 0.00 1233 reject_low 220 ALIGNMENT 0 Y12-15o03.p1k chr12 62 136 1694 1693 F 75 0.00 1233 reject_low 111 ALIGNMENT 0 Y12-15o03.p1k chr14 263 814 1998 1997 F 552 0.00 1233 reject_low 61 ALIGNMENT 162 Y12-15o03.p1k chr12 262 11 1076265 1076516 C 252 88.89 1233|9,0 reject_low 301 ALIGNMENT 0 Y12-15o03.p1k chr16 124 404 1877 1857 F 281 0.00 1233 reject_low 323 ALIGNMENT 81 Y12-15o03.p1k chr08 530 245 560545 560830 C 286 76.92 1233 reject_low 225 ALIGNMENT 0 Y12-15o03.p1k chr12 326 325 2207 7345 F 0 0.00 1233 reject_low 310 ALIGNMENT 0 Y12-15o03.p1k chr10 531 814 2073 2072 F 284 0.00 1233 reject_low 181 ALIGNMENT 0 Y12-15o03.p1k chr02 479 814 2414 2413 F 336 0.00 1233 reject_low 120 ALIGNMENT 42 Y12-15o03.p1k chr04 534 317 1530260 1530477 C 218 73.85 1233 reject_low 273 ALIGNMENT 96 Y12-15o03.p1k chr09 245 530 1697 1982 F 286 78.67 1233 reject_low 188 ALIGNMENT 0 Y12-15o03.p1k chr10 62 316 1680 1679 F 255 0.00 1233 reject_low 249 ALIGNMENT 0 Y12-15o03.p1k chr09 62 269 1686 1685 F 208 0.00 1233 reject_low 240 ALIGNMENT 0 Y12-15o03.p1k chr06 535 814 977 976 F 280 0.00 1233 reject_low 272 ALIGNMENT 73 Y12-15o03.p1k chr10 29 246 2148 2365 F 218 78.44 1233 reject_low 237 ALIGNMENT 0 Y12-15o03.p1k chr08 814 119 560418 560417 C 696 0.00 1233 reject_low 254 ALIGNMENT 157 Y12-15o03.p1k chr05 14 318 1754 2058 F 305 84.59 1233 reject_low 86 ALIGNMENT 25 Y12-15o03.p1k chr12 405 463 7701 7759 F 59 81.36 1233 reject_low 299,320 ALIGNMENT 75 Y12-15o03.p1k chr16 530 245 946198 946483 C 286 76.22 1233 reject_low 232 ALIGNMENT 0 Y12-15o03.p1k chr16 335 814 1907 1906 F 480 0.00 1233 reject_low 79 ALIGNMENT 78 Y12-15o03.p1k chr16 515 270 946249 946494 C 246 78.05 1233 reject_low 230 ALIGNMENT 118 Y12-15o03.p1k chr08 534 161 560469 560842 C 374 78.07 1233 reject_low 145 ALIGNMENT 0 Y12-15o03.p1k chr12 119 814 7750 7749 F 696 0.00 1233 reject_low 255 ALIGNMENT 82 Y12-15o03.p1k chr14 270 534 1574 1838 F 265 77.74 1233 reject_low 218 ALIGNMENT 0 Y12-15o03.p1k chr07 814 464 1088962 1088961 C 351 0.00 1233 reject_low 319 ALIGNMENT 786 Y12-15o03.p1k chr10 11 1089 1842 2894 F 1079 92.68 1233 ambiguous_tel 0 ALIGNMENT 0 Y12-15o03.p1k chr13 191 814 2091 2090 F 624 0.00 1233 reject_low 193 ALIGNMENT 0 Y12-15o03.p1k chr09 531 814 2054 2053 F 284 0.00 1233 reject_low 173 ALIGNMENT 0 Y12-15o03.p1k chr02 227 814 2414 2413 F 588 0.00 1233 reject_low 178 ALIGNMENT 0 Y12-15o03.p1k chr16 814 371 945963 945962 C 444 0.00 1233 reject_low 105 ALIGNMENT 272 Y12-15o03.p1k chr16 404 11 945964 946357 C 394 90.61 1233 reject_low 21 ALIGNMENT 0 Y12-15o03.p1k chr16 814 531 946199 946198 C 284 0.00 1233 reject_low 232 ALIGNMENT 147 Y12-15o03.p1k chr12 370 14 1076265 1076621 C 357 81.23 1233|9,0 reject_low 312 ALIGNMENT 73 Y12-15o03.p1k chr09 29 246 2165 2382 F 218 78.44 1233 reject_low 236 ALIGNMENT 91 Y12-15o03.p1k chr13 18 190 1919 2091 F 173 84.97 1233 reject_low 193 ALIGNMENT 0 Y12-15o03.p1k chr12 316 119 1070016 1076264 C 198 0.00 1233 reject_low 328 ALIGNMENT 0 Y12-15o03.p1k chr05 814 119 574894 574893 C 696 0.00 1233 reject_low 252 ALIGNMENT 0 Y12-15o03.p1k chr14 405 814 1996 1995 F 410 0.00 1233 reject_low 29 ALIGNMENT 236 Y12-15o03.p1k chr05 404 14 574895 575285 C 391 87.72 1233 reject_low 25 ALIGNMENT 0 Y12-15o03.p1k chr02 62 352 1497 1496 F 291 0.00 1233 reject_low 286 ALIGNMENT 0 Y12-15o03.p1k chr13 62 136 1678 1677 F 75 0.00 1233 reject_low 7 ALIGNMENT 0 Y12-15o03.p1k chr14 227 814 1998 1997 F 588 0.00 1233 reject_low 134 ALIGNMENT 0 Y12-15o03.p1k chr07 814 263 1088971 1088970 C 552 0.00 1233 reject_low 58 ALIGNMENT 45 Y12-15o03.p1k chr06 415 530 894 1009 F 116 80.17 1233 reject_low 262 ALIGNMENT 90 Y12-15o03.p1k chr04 530 245 1530192 1530477 C 286 77.97 1233 reject_low 202 ALIGNMENT 233 Y12-15o03.p1k chr04 404 14 1530066 1530456 C 391 87.47 1233 reject_low 33 ALIGNMENT 0 Y12-15o03.p1k chr05 531 814 1838 1837 F 284 0.00 1233 reject_low 142 ALIGNMENT 149 Y12-15o03.p1k chr12 29 370 1874 2215 F 342 81.87 1233|0,9 reject_low 314 ALIGNMENT 0 Y12-15o03.p1k chr02 535 814 2326 2325 F 280 0.00 1233 reject_low 37 ALIGNMENT 0 Y12-15o03.p1k chr12 136 62 1076679 1076678 C 75 0.00 1233 reject_low 14 ALIGNMENT 123 Y12-15o03.p1k chr10 14 278 2097 2361 F 265 83.02 1233 reject_low 127 ALIGNMENT 0 Y12-15o03.p1k chr12 325 326 1070007 1076273 C 0 0.00 1233 reject_low 309 ALIGNMENT 0 Y12-15o03.p1k chr16 814 191 945963 945962 C 624 0.00 1233 reject_low 196 ALIGNMENT 0 Y12-15o03.p1k chr16 244 62 946484 946483 C 183 0.00 1233 reject_low 232 ALIGNMENT 0 Y12-15o03.p1k chr14 119 814 1998 1997 F 696 0.00 1233 reject_low 258 ALIGNMENT 93 Y12-15o03.p1k chr12 14 123 7610 7719 F 110 95.45 1233 reject_low 320 ALIGNMENT 0 Y12-15o03.p1k chr12 531 814 2087 2086 F 284 0.00 1233 reject_low 111 ALIGNMENT 42 Y12-15o03.p1k chr12 534 317 1069798 1070015 C 218 73.85 1233|0,9 reject_low 304,309,328 ALIGNMENT 0 Y12-15o03.p1k chr09 531 814 1874 1873 F 284 0.00 1233 reject_low 266 ALIGNMENT 0 Y12-15o03.p1k chr16 814 535 946123 946122 C 280 0.00 1233 reject_low 104 ALIGNMENT 59 Y12-15o03.p1k chr02 317 515 1497 1695 F 199 77.39 1233 reject_low 245 ALIGNMENT 165 Y12-15o03.p1k chr16 11 262 1656 1907 F 252 89.29 1233 reject_low 62 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1069799 1069798 C 280 0.00 1233 reject_low 304,309,328 ALIGNMENT 47 Y12-15o03.p1k chr12 118 29 1076265 1076354 C 90 84.44 1233 reject_low 328 ALIGNMENT 118 Y12-15o03.p1k chr14 161 534 1573 1946 F 374 78.07 1233 reject_low 147 ALIGNMENT 119 Y12-15o03.p1k chr04 226 29 1530064 1530261 C 198 87.37 1233 reject_low 138 ALIGNMENT 0 Y12-15o03.p1k chr14 335 814 1998 1997 F 480 0.00 1233 reject_low 78 ALIGNMENT 84 Y12-15o03.p1k chr05 245 524 1481 1760 F 280 77.50 1233 reject_low 222 ALIGNMENT 0 Y12-15o03.p1k chr06 62 160 892 891 F 99 0.00 1233 ambiguous_tel 2 ALIGNMENT 0 Y12-15o03.p1k chr12 217 218 1070007 1076273 C 0 0.00 1233 reject_low 307 ALIGNMENT 0 Y12-15o03.p1k chr15 269 62 1089654 1089653 C 208 0.00 1233 reject_low 219 ALIGNMENT 0 Y12-15o03.p1k chr08 814 299 560418 560417 C 516 0.00 1233 reject_low 80 ALIGNMENT 87 Y12-15o03.p1k chr09 209 534 1697 2022 F 326 76.38 1233 reject_low 210 ALIGNMENT 30 Y12-15o03.p1k chr12 353 530 7337 7514 F 178 73.03 1233|9,0 reject_low 314 ALIGNMENT 0 Y12-15o03.p1k chr13 535 814 2003 2002 F 280 0.00 1233 reject_low 185 ALIGNMENT 0 Y12-15o03.p1k chr15 244 62 1089643 1089642 C 183 0.00 1233 reject_low 208 ALIGNMENT 0 Y12-15o03.p1k chr08 316 62 560831 560830 C 255 0.00 1233 reject_low 276 ALIGNMENT 0 Y12-15o03.p1k chr02 119 814 2414 2413 F 696 0.00 1233 reject_low 250 ALIGNMENT 90 Y12-15o03.p1k chr15 123 14 1089260 1089369 C 110 94.55 1233 reject_low 327 ALIGNMENT 0 Y12-15o03.p1k chr05 62 316 1481 1480 F 255 0.00 1233 reject_low 246 ALIGNMENT 0 Y12-15o03.p1k chr15 352 62 1089643 1089642 C 291 0.00 1233 reject_low 295 ALIGNMENT 0 Y12-15o03.p1k chr09 62 352 1697 1696 F 291 0.00 1233 reject_low 266 ALIGNMENT 0 Y12-15o03.p1k chr02 299 814 2414 2413 F 516 0.00 1233 reject_low 103 ALIGNMENT 0 Y12-15o03.p1k chr16 814 535 946051 946050 C 280 0.00 1233 reject_low 141 ALIGNMENT 42 Y12-15o03.p1k chr05 534 317 575089 575306 C 218 73.85 1233 reject_low 274 ALIGNMENT 210 Y12-15o03.p1k chr02 14 530 1518 2034 F 517 81.04 1233 reject_low 39 ALIGNMENT 0 Y12-15o03.p1k chr08 196 814 1936 1935 F 619 0.00 1233 reject_low 121 ALIGNMENT 0 Y12-15o03.p1k chr05 814 535 575090 575089 C 280 0.00 1233 reject_low 274 ALIGNMENT 0 Y12-15o03.p1k chr12 814 299 1069603 1069602 C 516 0.00 1233 reject_low 53 ALIGNMENT 160 Y12-15o03.p1k chr09 89 530 1685 2126 F 442 79.64 1233 reject_low 90 ALIGNMENT 0 Y12-15o03.p1k chr16 464 814 1916 1915 F 351 0.00 1233 reject_low 323 ALIGNMENT 0 Y12-15o03.p1k chr09 516 814 1895 1894 F 299 0.00 1233 reject_low 248 ALIGNMENT 0 Y12-15o03.p1k chr02 62 88 1485 1484 F 27 0.00 1233 reject_low 155 ALIGNMENT 0 Y12-15o03.p1k chr02 531 814 2250 2249 F 284 0.00 1233 reject_low 19 ALIGNMENT 0 Y12-15o03.p1k chr02 62 208 1497 1496 F 147 0.00 1233 reject_low 227 ALIGNMENT 45 Y12-15o03.p1k chr09 353 530 1697 1874 F 178 75.84 1233 reject_low 266 ALIGNMENT 0 Y12-15o03.p1k chr05 531 814 1694 1693 F 284 0.00 1233 reject_low 246 ALIGNMENT 0 Y12-15o03.p1k chr16 62 208 1494 1493 F 147 0.00 1233 reject_low 187 ALIGNMENT 0 Y12-15o03.p1k chr05 175 814 2058 2057 F 640 0.00 1233 reject_low 282 ALIGNMENT 0 Y12-15o03.p1k chr02 531 814 2034 2033 F 284 0.00 1233 reject_low 39 ALIGNMENT 215 Y12-15o03.p1k chr02 29 534 1821 2326 F 506 81.62 1233 reject_low 37 ALIGNMENT 0 Y12-15o03.p1k chr16 62 136 1494 1493 F 75 0.00 1233 reject_low 12 ALIGNMENT 121 Y12-15o03.p1k chr14 65 478 1585 1998 F 414 77.29 1233 reject_low 153 ALIGNMENT 0 Y12-15o03.p1k chr12 814 535 1069655 1069654 C 280 0.00 1233 reject_low 308 ALIGNMENT 25 Y12-15o03.p1k chr12 405 463 2166 2224 F 59 81.36 1233 reject_low 297 ALIGNMENT 156 Y12-15o03.p1k chr08 18 276 1651 1909 F 259 87.64 1233 reject_low 92 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 2127 2126 F 280 0.00 1233 reject_low 158 ALIGNMENT 90 Y12-15o03.p1k chr15 530 245 1089357 1089642 C 286 77.97 1233 reject_low 208 ALIGNMENT 122 Y12-15o03.p1k chr16 226 29 945962 946159 C 198 87.88 1233 reject_low 136 ALIGNMENT 0 Y12-15o03.p1k chr08 814 371 560418 560417 C 444 0.00 1233 reject_low 123 ALIGNMENT 0 Y12-15o03.p1k chr04 814 535 1530261 1530260 C 280 0.00 1233 reject_low 273 ALIGNMENT 0 Y12-15o03.p1k chr05 139 814 2058 2057 F 676 0.00 1233 reject_low 268 ALIGNMENT 0 Y12-15o03.p1k chr04 316 62 1530478 1530477 C 255 0.00 1233 reject_low 273 ALIGNMENT 116 Y12-15o03.p1k chr12 89 534 1682 2127 F 446 76.23 1233 reject_low 158 ALIGNMENT 0 Y12-15o03.p1k chr04 814 191 1530065 1530064 C 624 0.00 1233 reject_low 197 ALIGNMENT 126 Y12-15o03.p1k chr06 14 278 997 1261 F 265 83.40 1233 reject_low 124 ALIGNMENT 0 Y12-15o03.p1k chr16 88 62 946496 946495 C 27 0.00 1233 reject_low 141 ALIGNMENT 41 Y12-15o03.p1k chr09 64 138 2308 2382 F 75 85.33 1233 reject_low 284 ALIGNMENT 0 Y12-15o03.p1k chr10 62 208 1680 1679 F 147 0.00 1233 reject_low 211 ALIGNMENT 0 Y12-15o03.p1k chr05 814 535 574946 574945 C 280 0.00 1233 reject_low 143 ALIGNMENT 0 Y12-15o03.p1k chr15 814 335 1089230 1089229 C 480 0.00 1233 reject_low 84 ALIGNMENT 0 Y12-15o03.p1k chr05 814 405 574896 574895 C 410 0.00 1233 reject_low 25 ALIGNMENT 93 Y12-15o03.p1k chr16 14 123 1767 1876 F 110 95.45 1233 reject_low 323 ALIGNMENT 162 Y12-15o03.p1k chr12 262 11 1069602 1069853 C 252 88.89 1233 reject_low 68 ALIGNMENT 0 Y12-15o03.p1k chr08 109 814 1921 1920 F 706 0.00 1233 reject_low 271 ALIGNMENT 0 Y12-15o03.p1k chr15 814 299 1089230 1089229 C 516 0.00 1233 reject_low 54 ALIGNMENT 99 Y12-15o03.p1k chr04 534 209 1530152 1530477 C 326 77.61 1233 reject_low 175 ALIGNMENT 0 Y12-15o03.p1k chr12 535 814 7590 7589 F 280 0.00 1233 reject_low 317 ALIGNMENT 0 Y12-15o03.p1k chr15 160 62 1089655 1089654 C 99 0.00 1233 reject_low 161 ALIGNMENT 30 Y12-15o03.p1k chr05 530 353 575129 575306 C 178 73.03 1233 reject_low 289 ALIGNMENT 46 Y12-15o03.p1k chr12 353 534 1694 1875 F 182 75.82 1233 reject_low 264 ALIGNMENT 0 Y12-15o03.p1k chr05 247 814 2058 2057 F 568 0.00 1233 reject_low 128 ALIGNMENT 150 Y12-15o03.p1k chr13 14 370 1735 2091 F 357 81.51 1233 reject_low 99 ALIGNMENT 140 Y12-15o03.p1k chr10 11 354 2022 2365 F 344 81.10 1233 reject_low 116 ALIGNMENT 0 Y12-15o03.p1k chr05 814 531 575130 575129 C 284 0.00 1233 reject_low 289 ALIGNMENT 0 Y12-15o03.p1k chr04 814 263 1530065 1530064 C 552 0.00 1233 reject_low 67 ALIGNMENT 51 Y12-15o03.p1k chr06 341 534 892 1085 F 194 76.29 1233 reject_low 247 ALIGNMENT 0 Y12-15o03.p1k chr16 371 814 1907 1906 F 444 0.00 1233 reject_low 101 ALIGNMENT 96 Y12-15o03.p1k chr08 534 209 560505 560830 C 326 77.30 1233 reject_low 184 ALIGNMENT 602 Y12-15o05.p1k chr04 64 1032 349965 350910 F 969 91.02 1327 accept 0 ALIGNMENT 1024 Y12-15o06.q1k chr04 1212 35 1459576 1460766 C 1178 95.76 1335 accept 0 ALIGNMENT 877 Y12-15o07.q1k chr03 35 1200 13990 15160 F 1166 94.25 1326 accept 0 ALIGNMENT 893 Y12-15o07.p1k chr03 1015 2 17132 18142 C 1014 96.94 1281 accept 0 ALIGNMENT 290 Y12-15o08.p1k chr13 579 131 131143 131581 C 449 90.42 1600 accept 0 ALIGNMENT 961 Y12-15o09.p1k chr12 1151 1 457067 458212 C 1151 95.74 1204 accept 0 ALIGNMENT 961 Y12-15o09.p1k chr12 1151 1 466204 467349 C 1151 95.74 1204 accept 1 ALIGNMENT 1069 Y12-15o09.q1k chr12 38 1213 462481 463674 F 1176 97.70 1297 accept 1 ALIGNMENT 1069 Y12-15o09.q1k chr12 38 1213 453344 454537 F 1176 97.70 1297 accept 0 ALIGNMENT 665 Y12-15o10.p1k chr15 7 950 598147 599075 F 944 92.16 1231 ambiguous_trans 11 ALIGNMENT 650 Y12-15o10.p1k chr05 950 7 445057 445985 C 944 91.63 1231 ambiguous_trans 18 ALIGNMENT 674 Y12-15o10.p1k chr16 916 7 852319 853218 C 910 93.08 1231 ambiguous_trans 10 ALIGNMENT 659 Y12-15o10.p1k chr12 7 916 596475 597374 F 910 92.53 1231 ambiguous_trans 17 ALIGNMENT 650 Y12-15o10.p1k chr15 7 950 121034 121962 F 944 91.63 1231 ambiguous_trans 21 ALIGNMENT 653 Y12-15o10.p1k chr04 7 950 1210022 1210950 F 944 91.74 1231 ambiguous_trans 14 ALIGNMENT 650 Y12-15o10.p1k chr13 7 950 199663 200591 F 944 91.63 1231 ambiguous_trans 19 ALIGNMENT 653 Y12-15o10.p1k chr16 7 950 59783 60711 F 944 91.74 1231 ambiguous_trans 16 ALIGNMENT 796 Y12-15o10.p1k chr14 1 950 522467 523402 F 950 96.63 1231 ambiguous_trans 4 ALIGNMENT 776 Y12-15o10.p1k chr02 1 964 262895 263845 F 964 95.75 1231 ambiguous_trans 1 ALIGNMENT 656 Y12-15o10.p1k chr07 7 950 539096 540024 F 944 91.84 1231 ambiguous_trans 12 ALIGNMENT 650 Y12-15o10.p1k chr13 950 7 374361 375289 C 944 91.74 1231 ambiguous_trans 20 ALIGNMENT 638 Y12-15o10.p1k chr13 7 950 187496 188424 F 944 91.21 1231 ambiguous_trans 22 ALIGNMENT 641 Y12-15o10.p1k chr10 7 916 475709 476608 F 910 91.87 1231 ambiguous_trans 24 ALIGNMENT 775 Y12-15o10.p1k chr14 950 1 98269 99204 C 950 95.89 1231 ambiguous_trans 7 ALIGNMENT 656 Y12-15o10.p1k chr10 7 950 481293 482221 F 944 91.84 1231 ambiguous_trans 13 ALIGNMENT 629 Y12-15o10.p1k chr16 916 7 806331 807230 C 910 91.43 1231 ambiguous_trans 25 ALIGNMENT 775 Y12-15o10.p1k chr05 950 1 494156 495091 C 950 95.89 1231 ambiguous_trans 6 ALIGNMENT 1011 Y12-15o10.q1k chr13 39 1262 835406 836641 F 1224 95.75 1315 accept 0 ALIGNMENT 805 Y12-15o10.p1k chr13 950 1 358663 359598 C 950 96.95 1231 ambiguous_trans 3 ALIGNMENT 638 Y12-15o10.p1k chr16 7 950 847743 848671 F 944 91.21 1231 ambiguous_trans 23 ALIGNMENT 782 Y12-15o10.p1k chr07 950 7 819057 819985 C 944 96.29 1231 ambiguous_trans 5 ALIGNMENT 653 Y12-15o10.p1k chr12 7 950 654156 655084 F 944 91.74 1231 ambiguous_trans 15 ALIGNMENT 814 Y12-15o10.p1k chr02 1 950 224361 225296 F 950 97.26 1231 ambiguous_trans 2 ALIGNMENT 772 Y12-15o10.p1k chr08 950 1 545269 546204 C 950 95.79 1231 ambiguous_trans 9 ALIGNMENT 773 Y12-15o10.p1k chr12 950 1 216746 217681 C 950 95.79 1231 ambiguous_trans_ua 8 ALIGNMENT 933 Y12-15o11.q1k chr04 35 1156 703000 704126 F 1122 95.10 1316 accept 0 ALIGNMENT 948 Y12-15o11.p1k chr04 1121 5 707256 708359 C 1117 96.33 1288 accept 0 ALIGNMENT 985 Y12-15o12.p1k chr11 1246 13 567104 568331 C 1234 94.25 1262 accept 0 ALIGNMENT 1021 Y12-15o12.q1k chr11 38 1286 563303 564564 F 1249 95.60 1333 accept 0 ALIGNMENT 966 Y12-15o13.p1k chr04 12 1231 1312226 1313439 F 1220 94.51 1249 accept 0 ALIGNMENT 1064 Y12-15o13.q1k chr04 1260 40 1316248 1317470 C 1221 96.72 1298 accept 0 ALIGNMENT 990 Y12-15o17.q1k chr02 1247 34 394942 396153 C 1214 95.63 1307 accept 0 ALIGNMENT 602 Y12-15o17.p1k chr02 53 890 390315 391148 F 838 91.89 1378 accept 0 ALIGNMENT 927 Y12-15o18.q1k chr04 36 1126 1389949 1391022 F 1091 97.16 1361 accept 0 ALIGNMENT 769 Y12-15o18.p1k chr04 910 1 1393465 1394357 C 910 96.92 1215 accept 0 ALIGNMENT 616 Y12-15o19.p1k chr02 88 917 390341 391149 F 830 93.86 1405 accept 0 ALIGNMENT 986 Y12-15o19.q1k chr02 1242 39 394931 396160 C 1204 95.27 1265 accept 0 ALIGNMENT 970 Y12-15o22.p1k chr16 1086 25 157843 158900 C 1062 97.93 1148 accept 0 ALIGNMENT 979 Y12-15o22.q1k chr16 36 1169 153085 154210 F 1134 97.09 1243 accept 0 ALIGNMENT 833 Y12-15o23.q1k chr14 37 1101 415057 416119 F 1065 95.02 1186 accept 0 ALIGNMENT 446 Y12-15o24.p1k chr11 742 56 121504 122169 C 687 91.27 1337 accept 0 ALIGNMENT 1022 Y12-15o24.q1k chr11 38 1179 117650 118798 F 1142 97.37 1180 accept 0 ALIGNMENT 967 Y12-15p01.q1k chr11 1113 27 115803 116883 C 1087 97.15 1293 accept_chi 0 ALIGNMENT 892 Y12-15p01.p1k chr11 1045 1 142730 143758 C 1045 97.13 1191 accept_chi 1 ALIGNMENT 910 Y12-15p02.q1k chr02 37 1228 263622 264826 F 1192 93.37 1309 ambiguous_trans 7 ALIGNMENT 913 Y12-15p02.q1k chr15 37 1228 598864 600068 F 1192 93.46 1309 ambiguous_trans 6 ALIGNMENT 891 Y12-15p02.q1k chr05 1228 40 493163 494364 C 1189 93.02 1309 ambiguous_trans 9 ALIGNMENT 763 Y12-15p02.q1k chr15 37 1228 121751 122955 F 1192 89.51 1309 ambiguous_trans 17 ALIGNMENT 1015 Y12-15p02.q1k chr13 1228 37 357670 358874 C 1192 96.31 1309 ambiguous_trans 2 ALIGNMENT 763 Y12-15p02.q1k chr13 37 1228 188213 189417 F 1192 89.51 1309 ambiguous_trans 16 ALIGNMENT 722 Y12-15p02.q1k chr10 37 1079 476426 477468 F 1043 91.08 1309 ambiguous_trans 23 ALIGNMENT 898 Y12-15p02.q1k chr07 1228 37 818064 819268 C 1192 93.04 1309 ambiguous_trans 8 ALIGNMENT 746 Y12-15p02.q1k chr13 37 1079 200380 201422 F 1043 91.85 1309 ambiguous_trans 22 ALIGNMENT 1021 Y12-15p02.q1k chr02 37 1228 225085 226289 F 1192 96.48 1309 ambiguous_trans 1 ALIGNMENT 974 Y12-15p02.q1k chr14 1228 37 97276 98480 C 1192 95.30 1309 ambiguous_trans 5 ALIGNMENT 746 Y12-15p02.q1k chr05 1152 37 444147 445268 C 1116 90.32 1309 ambiguous_trans 20 ALIGNMENT 763 Y12-15p02.q1k chr16 37 1228 848460 849664 F 1192 89.51 1309 ambiguous_trans 18 ALIGNMENT 891 Y12-15p02.q1k chr13 1228 40 373368 374569 C 1189 93.02 1309 ambiguous_trans 10 ALIGNMENT 727 Y12-15p02.q1k chr16 1228 37 851297 852501 C 1192 88.51 1309 ambiguous_trans 19 ALIGNMENT 842 Y12-15p02.q1k chr04 1070 37 987558 988591 C 1034 95.07 1309 ambiguous_trans 14 ALIGNMENT 1004 Y12-15p02.q1k chr07 37 1228 539813 541017 F 1192 96.14 1309 ambiguous_trans 3 ALIGNMENT 935 Y12-15p02.p1k chr05 14 1106 428374 429454 F 1093 96.89 1193 accept 0 ALIGNMENT 752 Y12-15p02.q1k chr07 1079 37 562677 563719 C 1043 92.04 1309 ambiguous_trans 21 ALIGNMENT 763 Y12-15p02.q1k chr04 37 1228 1099811 1101015 F 1192 89.51 1309 ambiguous_trans 15 ALIGNMENT 885 Y12-15p02.q1k chr12 1228 40 215753 216954 C 1189 92.85 1309 ambiguous_trans_ua 11 ALIGNMENT 710 Y12-15p02.q1k chr16 1079 37 805471 806513 C 1043 90.70 1309 ambiguous_trans 24 ALIGNMENT 848 Y12-15p02.q1k chr12 37 1130 654873 655971 F 1094 93.78 1309 ambiguous_trans 13 ALIGNMENT 848 Y12-15p02.q1k chr04 37 1130 1210739 1211837 F 1094 93.78 1309 ambiguous_trans 12 ALIGNMENT 995 Y12-15p02.q1k chr10 37 1228 482010 483214 F 1192 95.89 1309 ambiguous_trans 4 ALIGNMENT 0 Y12-15p04.q1k chr08 884 802 295055 295054 C 83 0.00 1244 reject_low 5 ALIGNMENT 898 Y12-15p04.q1k chr08 1066 36 287176 288228 C 1031 97.19 1244 accept 0 ALIGNMENT 0 Y12-15p04.q1k chr10 522 884 733396 733395 F 363 0.00 1244 reject_low 7 ALIGNMENT 124 Y12-15p04.q1k chr10 56 771 27481 28196 F 716 73.46 1244 reject_low 6 ALIGNMENT 0 Y12-15p04.q1k chr10 62 88 732964 732963 F 27 0.00 1244 reject_low 7 ALIGNMENT 191 Y12-15p04.q1k chr08 1005 68 291077 292028 C 938 75.37 1244 reject_low 4 ALIGNMENT 20 Y12-15p04.q1k chr10 482 521 733357 733396 F 40 85.00 1244 reject_low 7 ALIGNMENT 129 Y12-15p04.q1k chr08 801 41 295054 295814 C 761 73.98 1244 reject_low 5 ALIGNMENT 0 Y12-15p04.q1k chr10 132 481 733007 733356 F 350 0.00 1244 reject_low 7 ALIGNMENT 22 Y12-15p04.q1k chr10 89 131 732964 733006 F 43 86.05 1244 reject_low 7 ALIGNMENT 979 Y12-15p04.p1k chr08 19 1165 284894 286061 F 1147 96.34 1166 accept 0 ALIGNMENT 439 Y12-15p04.q1k chr04 964 36 1154415 1155352 C 929 83.64 1244 reject_low 2 ALIGNMENT 0 Y12-15p04.q1k chr10 772 884 28196 28195 F 113 0.00 1244 reject_low 6 ALIGNMENT 246 Y12-15p04.q1k chr04 1003 36 1163112 1164093 C 968 76.96 1244 reject_low 3 ALIGNMENT 438 Y12-15p04.q1k chr04 1044 36 1159717 1160744 C 1009 82.76 1244 reject_low 1 ALIGNMENT 1097 Y12-15p05.q1k chr13 1288 34 879125 880392 C 1255 96.41 1342 accept 0 ALIGNMENT 1033 Y12-15p06.q1k chr15 33 1232 995159 996367 F 1200 96.50 1322 accept 0 ALIGNMENT 0 Y12-15p07.q1k chr10 675 789 28010 28009 F 115 0.00 1353 reject_low 6 ALIGNMENT 22 Y12-15p07.q1k chr08 1173 1101 287190 287259 C 73 79.45 1353 manual 3 reject_low 5,7 ALIGNMENT 0 Y12-15p07.q1k chr10 612 789 733397 733396 F 178 0.00 1353 reject_low 9 ALIGNMENT 308 Y12-15p07.q1k chr08 1059 33 291129 292152 C 1027 77.90 1353 reject_low 5 ALIGNMENT 21 Y12-15p07.q1k chr10 571 611 733357 733397 F 41 85.37 1353 reject_low 9 ALIGNMENT 0 Y12-15p07.q1k chr08 1100 1060 287260 287296 C 41 0.00 1353 manual 3 ALIGNMENT 831 Y12-15p07.q1k chr04 1209 33 1154278 1155444 C 1177 91.42 1353 manual 1 ALIGNMENT 571 Y12-15p07.q1k chr08 1059 34 287297 288319 C 1026 86.26 1353 manual 3 ALIGNMENT 210 Y12-15p07.q1k chr08 1018 34 294927 295910 C 985 75.23 1353 reject_low 7 ALIGNMENT 968 Y12-15p07.p1k chr06 1 1149 190055 191197 F 1149 96.17 1241 accept_chi 0 ALIGNMENT 33 Y12-15p07.q1k chr13 971 1027 289464 289520 F 57 87.72 1353 reject_low 8 ALIGNMENT 121 Y12-15p07.q1k chr10 145 674 27481 28010 F 530 75.66 1353 reject_low 6 ALIGNMENT 26 Y12-15p07.q1k chr04 1191 1103 1163037 1163122 C 89 78.65 1353 manual 4 ALIGNMENT 0 Y12-15p07.q1k chr13 901 970 289396 289463 F 70 0.00 1353 reject_low 8 ALIGNMENT 0 Y12-15p07.q1k chr04 1102 1060 1163123 1163161 C 43 0.00 1353 manual 4 ALIGNMENT 0 Y12-15p07.q1k chr08 1100 1060 287260 291128 C 41 0.00 1353 reject_low 5 ALIGNMENT 377 Y12-15p07.q1k chr04 1059 33 1163162 1164185 C 1027 80.04 1353 manual 4 ALIGNMENT 828 Y12-15p07.q1k chr04 1209 33 1159670 1160836 C 1177 91.33 1353 manual 2 ALIGNMENT 0 Y12-15p07.q1k chr10 62 144 27481 27480 F 83 0.00 1353 reject_low 6 ALIGNMENT 165 Y12-15p07.q1k chr13 33 900 288527 289395 F 868 73.96 1353 reject_low 8 ALIGNMENT 0 Y12-15p07.q1k chr10 62 570 733357 733356 F 509 0.00 1353 reject_low 9 ALIGNMENT 0 Y12-15p07.q1k chr08 1100 1019 287260 294926 C 82 0.00 1353 reject_low 7 ALIGNMENT 260 Y12-15p08.q1k chr16 1070 198 778645 779516 C 873 77.89 1359 reject_low 3 ALIGNMENT 460 Y12-15p08.q1k chr16 39 1070 54120 55153 F 1032 82.27 1359 reject_low 2 ALIGNMENT 981 Y12-15p08.q1k chr15 36 1249 225037 226249 F 1214 94.48 1359 accept_chi 1 ALIGNMENT 0 Y12-15p08.q1k chr16 197 62 779517 779516 C 136 0.00 1359 reject_low 3 ALIGNMENT 995 Y12-15p08.p1k chr14 13 1164 720811 721954 F 1152 97.05 1244 accept_chi 0 ALIGNMENT 1008 Y12-15p09.q1k chr11 36 1262 242373 243619 F 1227 95.52 1306 accept 0 ALIGNMENT 805 Y12-15p09.p1k chr11 893 9 246447 247317 C 885 98.31 1318 accept 0 ALIGNMENT 1066 Y12-15p11.q1k chr09 1203 29 297245 298420 C 1175 97.87 1320 accept 0 ALIGNMENT 881 Y12-15p11.p1k chr09 1 1040 294392 295432 F 1040 96.63 1194 accept 0 ALIGNMENT 1084 Y12-15p13.q1k chr11 33 1255 603291 604518 F 1223 97.14 1284 accept 0 ALIGNMENT 904 Y12-15p13.p1k chr11 1083 7 607175 608243 C 1077 96.75 1283 accept 0 ALIGNMENT 1032 Y12-15p16.q1k chr02 39 1205 97970 99142 F 1167 97.00 1324 accept 0 ALIGNMENT 868 Y12-15p16.p1k chr02 996 1 102791 103779 C 996 97.89 1224 accept 0 ALIGNMENT 974 Y12-15p17.q1k chr04 37 1227 895438 896621 F 1191 95.21 1310 accept 0 ALIGNMENT 819 Y12-15p17.p1k chr04 904 4 899664 900558 C 901 98.56 1221 accept 0 ALIGNMENT 803 Y12-15p20.p1k chr02 4 961 131545 132484 F 958 96.56 1277 accept 0 ALIGNMENT 982 Y12-15p20.q1k chr02 1210 39 135414 136576 C 1172 95.73 1298 accept 0 ALIGNMENT 225 Y12-15p21.q1k chr10 1031 720 541033 541341 C 312 93.27 1234 reject_low 19 ALIGNMENT 0 Y12-15p21.q1k chr14 715 62 726951 726950 C 654 0.00 1234 reject_low 11 ALIGNMENT 236 Y12-15p21.q1k chr03 720 1023 90437 90737 F 304 95.07 1234 reject_low 13 ALIGNMENT 0 Y12-15p21.q1k chr06 62 719 137908 137907 F 658 0.00 1234 reject_low 16 ALIGNMENT 0 Y12-15p21.q1k chr01 718 62 166165 166164 C 657 0.00 1234 reject_low 21 ALIGNMENT 243 Y12-15p21.q1k chr05 1048 720 431495 431818 C 329 94.22 1234 reject_low 6 ALIGNMENT 246 Y12-15p21.q1k chr15 1055 718 709694 710026 C 338 93.79 1234 reject_low 1 ALIGNMENT 0 Y12-15p21.q1k chr10 62 929 540887 540886 F 868 0.00 1234 reject_low 23 ALIGNMENT 239 Y12-15p21.q1k chr04 1048 720 519321 519643 C 329 93.92 1234 reject_low 9 ALIGNMENT 0 Y12-15p21.q1k chr03 62 719 90437 90436 F 658 0.00 1234 reject_low 13 ALIGNMENT 166 Y12-15p21.q1k chr01 1048 719 165836 166164 C 330 86.36 1234 reject_low 21 ALIGNMENT 0 Y12-15p21.q1k chr06 878 930 137808 137850 F 53 0.00 1234 reject_low 25 ALIGNMENT 0 Y12-15p21.q1k chr12 62 719 941189 941188 F 658 0.00 1234 reject_low 14 ALIGNMENT 248 Y12-15p21.q1k chr13 1048 720 168358 168681 C 329 94.53 1234 reject_low 4 ALIGNMENT 0 Y12-15p21.q1k chr15 717 62 710027 710026 C 656 0.00 1234 reject_low 1 ALIGNMENT 0 Y12-15p21.q1k chr05 62 719 62142 62141 F 658 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-15p21.q1k chr03 62 718 84809 84808 F 657 0.00 1234 reject_low 15 ALIGNMENT 246 Y12-15p21.q1k chr05 720 1048 62142 62465 F 329 94.53 1234 reject_low 5 ALIGNMENT 0 Y12-15p21.q1k chr06 62 786 137718 137717 F 725 0.00 1234 reject_low 25 ALIGNMENT 0 Y12-15p21.q1k chr15 62 719 664814 664813 F 658 0.00 1234 reject_low 7 ALIGNMENT 24 Y12-15p21.q1k chr03 941 967 84626 84652 F 27 96.30 1234 reject_low 24 ALIGNMENT 223 Y12-15p21.q1k chr12 1031 720 976278 976585 C 312 93.27 1234 reject_low 20 ALIGNMENT 233 Y12-15p21.q1k chr06 720 1023 137908 138208 F 304 94.74 1234 reject_low 16 ALIGNMENT 0 Y12-15p21.q1k chr07 62 715 811448 811447 F 654 0.00 1234 reject_low 10 ALIGNMENT 891 Y12-15p21.p1k chr09 1033 13 249136 250146 C 1021 96.87 1222 accept 0 ALIGNMENT 0 Y12-15p21.q1k chr08 719 62 92096 92095 C 658 0.00 1234 reject_low 8 ALIGNMENT 0 Y12-15p21.q1k chr05 719 62 431819 431818 C 658 0.00 1234 reject_low 6 ALIGNMENT 0 Y12-15p21.q1k chr03 62 940 84626 84625 F 879 0.00 1234 reject_low 24 ALIGNMENT 236 Y12-15p21.q1k chr12 720 1023 941189 941489 F 304 95.07 1234 reject_low 14 ALIGNMENT 39 Y12-15p21.q1k chr10 930 1049 540887 541002 F 120 81.67 1234 reject_low 23 ALIGNMENT 923 Y12-15p21.q1k chr09 35 1154 245534 246640 F 1120 96.34 1234 accept 0 ALIGNMENT 0 Y12-15p21.q1k chr04 719 62 645831 645830 C 658 0.00 1234 reject_low 18 ALIGNMENT 228 Y12-15p21.q1k chr14 1041 716 726630 726950 C 326 92.94 1234 reject_low 11 ALIGNMENT 30 Y12-15p21.q1k chr06 787 877 137718 137807 F 91 79.12 1234 reject_low 25 ALIGNMENT 0 Y12-15p21.q1k chr15 719 62 704397 704396 C 658 0.00 1234 reject_low 2 ALIGNMENT 240 Y12-15p21.q1k chr08 1048 720 91772 92095 C 329 93.92 1234 reject_low 8 ALIGNMENT 249 Y12-15p21.q1k chr08 1048 720 389189 389512 C 329 94.83 1234 reject_low 3 ALIGNMENT 233 Y12-15p21.q1k chr06 720 1023 143535 143835 F 304 94.74 1234 reject_low 17 ALIGNMENT 239 Y12-15p21.q1k chr04 1041 720 513700 514016 C 322 94.41 1234 reject_low 12 ALIGNMENT 244 Y12-15p21.q1k chr15 1055 720 704066 704396 C 336 93.75 1234 reject_low 2 ALIGNMENT 0 Y12-15p21.q1k chr04 719 62 514017 514016 C 658 0.00 1234 reject_low 12 ALIGNMENT 0 Y12-15p21.q1k chr13 719 62 168682 168681 C 658 0.00 1234 reject_low 4 ALIGNMENT 0 Y12-15p21.q1k chr08 719 62 389513 389512 C 658 0.00 1234 reject_low 3 ALIGNMENT 165 Y12-15p21.q1k chr01 1048 720 160248 160575 C 329 86.32 1234 reject_low 22 ALIGNMENT 234 Y12-15p21.q1k chr03 719 1023 84809 85110 F 305 94.75 1234 reject_low 15 ALIGNMENT 27 Y12-15p21.q1k chr06 931 982 137851 137902 F 52 84.62 1234 reject_low 25 ALIGNMENT 0 Y12-15p21.q1k chr06 62 719 143535 143534 F 658 0.00 1234 reject_low 17 ALIGNMENT 0 Y12-15p21.q1k chr12 719 62 976586 976585 C 658 0.00 1234 reject_low 20 ALIGNMENT 233 Y12-15p21.q1k chr07 716 1023 811448 811752 F 308 94.48 1234 reject_low 10 ALIGNMENT 0 Y12-15p21.q1k chr01 719 62 160576 160575 C 658 0.00 1234 reject_low 22 ALIGNMENT 0 Y12-15p21.q1k chr04 719 62 519644 519643 C 658 0.00 1234 reject_low 9 ALIGNMENT 0 Y12-15p21.q1k chr10 719 62 541342 541341 C 658 0.00 1234 reject_low 19 ALIGNMENT 243 Y12-15p21.q1k chr15 720 1048 664814 665137 F 329 94.22 1234 reject_low 7 ALIGNMENT 227 Y12-15p21.q1k chr04 1031 720 645521 645830 C 312 93.27 1234 reject_low 18 ALIGNMENT 896 Y12-15p22.p1k chr07 11 1055 684783 685820 F 1045 97.32 1178 accept 0 ALIGNMENT 993 Y12-15p22.q1k chr07 1170 31 687952 689076 C 1140 97.28 1248 accept 0 ALIGNMENT 964 Y12-15p23.q1k chr10 31 1130 205776 206860 F 1100 97.73 1203 accept 0 ALIGNMENT 986 Y12-15p24.q1k chr07 1116 37 70210 71286 C 1080 97.96 1182 accept 0 ALIGNMENT 749 Y12-15p24.p1k chr07 49 931 65535 66410 F 883 96.60 1292 accept 0 ALIGNMENT 347 Y12-16a01.q1k chr03 756 32 20303 21030 C 725 84.41 1348 accept 0 ALIGNMENT 671 Y12-16a01.p1k chr03 31 980 15954 16896 F 950 91.58 1561 accept 0 ALIGNMENT 1076 Y12-16a02.q1k chr15 1226 39 162437 163621 C 1188 96.30 1352 accept 0 ALIGNMENT 0 Y12-16a02.p1k chr13 835 867 874343 874342 F 33 0.00 1361 reject_low 1 ALIGNMENT 1004 Y12-16a02.p1k chr15 27 1157 159793 160935 F 1131 96.64 1361 accept 0 ALIGNMENT 586 Y12-16a02.p1k chr13 34 834 873543 874343 F 801 91.14 1361 reject_low 1 ALIGNMENT 0 Y12-16a03.q1k chr15 62 210 4 3 F 149 0.00 1336 reject_low 3 ALIGNMENT 372 Y12-16a03.q1k chr12 147 1015 11196 12047 F 869 86.31 1336 reject_low 6 ALIGNMENT 211 Y12-16a03.q1k chr06 180 1059 4693 5537 F 880 80.91 1336 reject_low 1 ALIGNMENT 0 Y12-16a03.q1k chr08 707 309 562511 562510 C 399 0.00 1336 reject_low 26 ALIGNMENT 0 Y12-16a03.q1k chr12 62 146 11196 11195 F 85 0.00 1336 reject_low 6 ALIGNMENT 24 Y12-16a03.q1k chr08 308 184 562510 562631 C 125 88.80 1336 reject_low 26 ALIGNMENT 43 Y12-16a03.q1k chr01 866 774 229583 229675 C 93 82.80 1336 reject_low 23 ALIGNMENT 312 Y12-16a03.q1k chr09 1019 247 439098 439880 C 773 84.61 1336 reject_low 15 ALIGNMENT 313 Y12-16a03.q1k chr11 250 1100 2 856 F 851 83.43 1336 reject_low 8 ALIGNMENT 0 Y12-16a03.q1k chr04 62 162 4 3 F 101 0.00 1336 reject_low 7 ALIGNMENT 43 Y12-16a03.q1k chr11 435 99 666125 666451 C 337 82.20 1336 reject_low 27 ALIGNMENT 23 Y12-16a03.q1k chr14 161 35 784040 784160 C 127 89.76 1336 reject_low 21 ALIGNMENT 0 Y12-16a03.q1k chr08 117 62 562641 562640 C 56 0.00 1336 reject_low 25 ALIGNMENT 0 Y12-16a03.q1k chr03 222 62 316615 316614 C 161 0.00 1336 reject_low 10 ALIGNMENT 0 Y12-16a03.q1k chr09 246 62 439881 439880 C 185 0.00 1336 reject_low 15 ALIGNMENT 0 Y12-16a03.q1k chr14 62 237 6617 6616 F 176 0.00 1336 accept_tel 0 ALIGNMENT 0 Y12-16a03.q1k chr01 773 62 229676 229675 C 712 0.00 1336 reject_low 23 ALIGNMENT 0 Y12-16a03.q1k chr08 183 62 556979 556978 C 122 0.00 1336 reject_low 17 ALIGNMENT 308 Y12-16a03.q1k chr02 1100 252 812326 813177 C 849 83.27 1336 reject_low 9 ALIGNMENT 34 Y12-16a03.q1k chr11 243 48 666255 666453 C 196 87.24 1336 reject_low 19 ALIGNMENT 0 Y12-16a03.q1k chr07 62 279 8 7 F 218 0.00 1336 reject_low 16 ALIGNMENT 326 Y12-16a03.q1k chr13 1015 184 923576 924415 C 832 84.50 1336 reject_low 11 ALIGNMENT 273 Y12-16a03.q1k chr07 280 1013 8 741 F 734 83.51 1336 reject_low 16 ALIGNMENT 0 Y12-16a03.q1k chr08 183 62 562632 562631 C 122 0.00 1336 reject_low 26 ALIGNMENT 0 Y12-16a03.q1k chr13 62 263 5541 5540 F 202 0.00 1336 reject_low 13 ALIGNMENT 20 Y12-16a03.q1k chr12 67 233 11200 11357 F 167 87.43 1336 reject_low 24 ALIGNMENT 0 Y12-16a03.q1k chr10 62 506 7228 7227 F 445 0.00 1336 reject_low 18 ALIGNMENT 0 Y12-16a03.q1k chr12 234 707 11357 11356 F 474 0.00 1336 reject_low 24 ALIGNMENT 22 Y12-16a03.q1k chr08 306 118 562456 562640 C 189 87.83 1336 reject_low 25 ALIGNMENT 341 Y12-16a03.q1k chr14 238 1072 6617 7448 F 835 84.79 1336 accept_tel 0 ALIGNMENT 0 Y12-16a03.q1k chr06 62 179 4693 4692 F 118 0.00 1336 reject_low 1 ALIGNMENT 358 Y12-16a03.q1k chr15 211 1100 4 895 F 890 84.38 1336 reject_low 3 ALIGNMENT 0 Y12-16a03.q1k chr11 62 249 2 1 F 188 0.00 1336 reject_low 8 ALIGNMENT 0 Y12-16a03.q1k chr14 707 162 784041 784040 C 546 0.00 1336 reject_low 21 ALIGNMENT 922 Y12-16a03.p1k chr06 1203 29 8436 9627 C 1175 94.13 1391 reject_low 1 ALIGNMENT 311 Y12-16a03.q1k chr13 264 1067 5541 6359 F 804 83.96 1336 reject_low 13 ALIGNMENT 941 Y12-16a03.p1k chr14 1203 29 10346 11534 C 1175 94.64 1391 accept_tel 0 ALIGNMENT 343 Y12-16a03.q1k chr03 1044 223 315787 316614 C 822 85.40 1336 reject_low 10 ALIGNMENT 0 Y12-16a03.q1k chr12 189 62 1065153 1065152 C 128 0.00 1336 reject_low 14 ALIGNMENT 253 Y12-16a03.q1k chr08 1009 184 556149 556978 C 826 82.45 1336 reject_low 17 ALIGNMENT 0 Y12-16a03.q1k chr04 200 62 1525450 1525449 C 139 0.00 1336 reject_low 12 ALIGNMENT 0 Y12-16a03.q1k chr14 707 217 784041 784040 C 491 0.00 1336 reject_low 20 ALIGNMENT 0 Y12-16a03.q1k chr11 707 244 666256 666255 C 464 0.00 1336 reject_low 19 ALIGNMENT 0 Y12-16a03.q1k chr05 324 62 570324 570323 C 263 0.00 1336 reject_low 4 ALIGNMENT 0 Y12-16a03.q1k chr08 707 234 562457 562456 C 474 0.00 1336 reject_low 22 ALIGNMENT 323 Y12-16a03.q1k chr14 1015 37 783316 784307 C 979 83.96 1336 reject_low 5 ALIGNMENT 0 Y12-16a03.q1k chr08 707 307 562457 562456 C 401 0.00 1336 reject_low 25 ALIGNMENT 0 Y12-16a03.q1k chr11 458 436 666136 666124 C 23 0.00 1336 reject_low 27 ALIGNMENT 386 Y12-16a03.q1k chr05 1072 325 569574 570323 C 748 87.70 1336 reject_low 4 ALIGNMENT 25 Y12-16a03.q1k chr08 233 48 562456 562640 C 186 86.56 1336 reject_low 22 ALIGNMENT 27 Y12-16a03.q1k chr14 216 35 784040 784216 C 182 86.81 1336 reject_low 20 ALIGNMENT 231 Y12-16a03.q1k chr11 1044 459 665550 666135 C 586 83.62 1336 reject_low 27 ALIGNMENT 305 Y12-16a03.q1k chr12 1039 190 1064291 1065152 C 850 83.76 1336 reject_low 14 ALIGNMENT 249 Y12-16a03.q1k chr10 507 1044 7228 7759 F 538 86.06 1336 reject_low 18 ALIGNMENT 317 Y12-16a03.q1k chr04 163 1100 4 951 F 938 83.16 1336 reject_low 7 ALIGNMENT 0 Y12-16a03.q1k chr13 183 62 924416 924415 C 122 0.00 1336 reject_low 11 ALIGNMENT 320 Y12-16a03.q1k chr04 1044 201 1524616 1525449 C 844 84.36 1336 reject_low 12 ALIGNMENT 0 Y12-16a03.q1k chr11 98 62 666452 666451 C 37 0.00 1336 reject_low 27 ALIGNMENT 396 Y12-16a03.q1k chr03 37 1100 100 1146 F 1064 84.68 1336 reject_low 2 ALIGNMENT 0 Y12-16a03.q1k chr02 251 62 813178 813177 C 190 0.00 1336 reject_low 9 ALIGNMENT 535 Y12-16a04.p1k chr12 641 23 277488 278104 C 619 96.77 1481 accept 0 ALIGNMENT 552 Y12-16a04.q1k chr12 39 603 274728 275292 F 565 99.82 1359 accept 0 ALIGNMENT 0 Y12-16a05.q1k chr06 724 877 137907 137906 F 154 0.00 1281 reject_low 21 ALIGNMENT 0 Y12-16a05.q1k chr15 62 456 123290 123289 F 395 0.00 1281 reject_low 6 ALIGNMENT 229 Y12-16a05.q1k chr13 456 769 184169 184481 F 314 93.31 1281 reject_low 7 ALIGNMENT 240 Y12-16a05.q1k chr16 457 790 560478 560810 F 334 92.81 1281 reject_low 3 ALIGNMENT 0 Y12-16a05.q1k chr15 62 456 594821 594820 F 395 0.00 1281 reject_low 10 ALIGNMENT 0 Y12-16a05.q1k chr15 770 877 118019 118018 F 108 0.00 1281 reject_low 16 ALIGNMENT 0 Y12-16a05.q1k chr04 62 456 1095762 1095761 F 395 0.00 1281 reject_low 14 ALIGNMENT 20 Y12-16a05.p1k chr06 80 128 73352 73400 F 49 91.84 1356 reject_low 30 ALIGNMENT 0 Y12-16a05.q1k chr09 456 62 197486 197485 C 395 0.00 1281 reject_low 20 ALIGNMENT 0 Y12-16a05.q1k chr06 780 877 143856 143855 F 98 0.00 1281 reject_low 27 ALIGNMENT 188 Y12-16a05.q1k chr10 511 789 204036 204313 F 279 91.40 1281 reject_low 19 ALIGNMENT 231 Y12-16a05.q1k chr15 457 789 123290 123627 F 333 91.89 1281 reject_low 6 ALIGNMENT 0 Y12-16a05.q1k chr07 767 877 817387 817386 F 111 0.00 1281 reject_low 31 ALIGNMENT 0 Y12-16a05.q1k chr14 877 790 102193 102192 C 88 0.00 1281 reject_low 4 ALIGNMENT 0 Y12-16a05.q1k chr04 770 877 1096079 1096078 F 108 0.00 1281 reject_low 14 ALIGNMENT 243 Y12-16a05.q1k chr14 789 457 102192 102523 C 333 93.09 1281 reject_low 4 ALIGNMENT 0 Y12-16a05.p1k chr16 155 774 650581 650580 F 620 0.00 1356 reject_low 24 ALIGNMENT 0 Y12-16a05.q1k chr16 62 456 560478 560477 F 395 0.00 1281 reject_low 3 ALIGNMENT 217 Y12-16a05.q1k chr04 457 769 1095762 1096079 F 313 92.01 1281 reject_low 14 ALIGNMENT 0 Y12-16a05.p1k chr04 774 162 1290926 1290925 C 613 0.00 1356 reject_low 23 ALIGNMENT 862 Y12-16a05.p1k chr05 1040 23 141995 143037 C 1018 96.56 1356 accept 0 ALIGNMENT 228 Y12-16a05.q1k chr08 769 457 543630 543941 C 313 93.29 1281 reject_low 12 ALIGNMENT 243 Y12-16a05.q1k chr14 790 457 96609 96941 C 334 93.11 1281 reject_low 1 ALIGNMENT 108 Y12-16a05.q1k chr06 509 768 158408 158663 F 260 83.85 1281 reject_low 25 ALIGNMENT 231 Y12-16a05.q1k chr07 769 457 817418 817729 C 313 93.61 1281 reject_low 9 ALIGNMENT 190 Y12-16a05.q1k chr01 789 457 165827 166163 C 333 87.69 1281 reject_low 18 ALIGNMENT 233 Y12-16a05.q1k chr02 457 789 221040 221373 F 333 92.19 1281 reject_low 5 ALIGNMENT 26 Y12-16a05.p1k chr12 40 113 701185 701258 F 74 89.19 1356 reject_low 22 ALIGNMENT 0 Y12-16a05.q1k chr03 780 877 151838 151837 F 98 0.00 1281 reject_low 13 ALIGNMENT 0 Y12-16a05.q1k chr07 877 770 817419 817418 C 108 0.00 1281 reject_low 9 ALIGNMENT 0 Y12-16a05.q1k chr02 790 877 221373 221372 F 88 0.00 1281 reject_low 5 ALIGNMENT 0 Y12-16a05.q1k chr06 62 459 137658 137657 F 398 0.00 1281 reject_low 21 ALIGNMENT 0 Y12-16a05.q1k chr10 62 510 204036 204035 F 449 0.00 1281 reject_low 19 ALIGNMENT 0 Y12-16a05.q1k chr13 770 877 184481 184480 F 108 0.00 1281 reject_low 7 ALIGNMENT 0 Y12-16a05.p1k chr06 62 79 73352 73351 F 18 0.00 1356 reject_low 30 ALIGNMENT 0 Y12-16a05.q1k chr12 877 770 215102 215101 C 108 0.00 1281 reject_low 15 ALIGNMENT 231 Y12-16a05.q1k chr15 457 769 600403 600714 F 313 93.61 1281 reject_low 11 ALIGNMENT 0 Y12-16a05.q1k chr15 62 456 117702 117701 F 395 0.00 1281 reject_low 16 ALIGNMENT 231 Y12-16a05.q1k chr15 457 769 594821 595132 F 313 93.61 1281 reject_low 10 ALIGNMENT 0 Y12-16a05.q1k chr10 877 608 203886 203885 C 270 0.00 1281 reject_low 29 ALIGNMENT 217 Y12-16a05.q1k chr12 769 457 215101 215418 C 313 92.01 1281 reject_low 15 ALIGNMENT 22 Y12-16a05.p1k chr05 66 123 81195 81252 F 58 91.38 1356 reject_low 28 ALIGNMENT 0 Y12-16a05.q1k chr15 770 877 600714 600713 F 108 0.00 1281 reject_low 11 ALIGNMENT 0 Y12-16a05.q1k chr14 456 62 96942 96941 C 395 0.00 1281 reject_low 1 ALIGNMENT 0 Y12-16a05.q1k chr07 62 666 817290 817289 F 605 0.00 1281 reject_low 31 ALIGNMENT 0 Y12-16a05.q1k chr16 791 877 560810 560809 F 87 0.00 1281 reject_low 3 ALIGNMENT 0 Y12-16a05.q1k chr10 790 877 204313 204312 F 88 0.00 1281 reject_low 19 ALIGNMENT 0 Y12-16a05.p1k chr06 129 774 73400 73399 F 646 0.00 1356 reject_low 30 ALIGNMENT 0 Y12-16a05.q1k chr01 877 790 160240 160239 C 88 0.00 1281 reject_low 17 ALIGNMENT 0 Y12-16a05.q1k chr07 456 62 817730 817729 C 395 0.00 1281 reject_low 9 ALIGNMENT 0 Y12-16a05.q1k chr13 62 455 184169 184168 F 394 0.00 1281 reject_low 7 ALIGNMENT 44 Y12-16a05.q1k chr07 667 766 817290 817387 F 100 84.00 1281 reject_low 31 ALIGNMENT 0 Y12-16a05.q1k chr01 877 790 165828 165827 C 88 0.00 1281 reject_low 18 ALIGNMENT 0 Y12-16a05.q1k chr06 877 778 161811 161810 C 100 0.00 1281 reject_low 8 ALIGNMENT 225 Y12-16a05.q1k chr06 777 456 161810 162130 C 322 92.24 1281 reject_low 8 ALIGNMENT 0 Y12-16a05.q1k chr15 770 877 595132 595131 F 108 0.00 1281 reject_low 10 ALIGNMENT 0 Y12-16a05.q1k chr08 877 770 543631 543630 C 108 0.00 1281 reject_low 12 ALIGNMENT 0 Y12-16a05.q1k chr02 62 456 221040 221039 F 395 0.00 1281 reject_low 5 ALIGNMENT 0 Y12-16a05.p1k chr12 114 774 701258 701257 F 661 0.00 1356 reject_low 22 ALIGNMENT 190 Y12-16a05.q1k chr01 789 457 160239 160575 C 333 87.69 1281 reject_low 17 ALIGNMENT 0 Y12-16a05.q1k chr02 790 877 226955 226954 F 88 0.00 1281 reject_low 2 ALIGNMENT 0 Y12-16a05.q1k chr06 62 508 158408 158407 F 447 0.00 1281 reject_low 25 ALIGNMENT 92 Y12-16a05.q1k chr06 457 779 137908 138229 F 323 79.26 1281 reject_low 26 ALIGNMENT 0 Y12-16a05.q1k chr12 456 62 215419 215418 C 395 0.00 1281 reject_low 15 ALIGNMENT 217 Y12-16a05.q1k chr15 457 769 117702 118019 F 313 92.01 1281 reject_low 16 ALIGNMENT 0 Y12-16a05.q1k chr06 780 877 138229 138228 F 98 0.00 1281 reject_low 26 ALIGNMENT 0 Y12-16a05.q1k chr06 455 62 162131 162130 C 394 0.00 1281 reject_low 8 ALIGNMENT 0 Y12-16a05.q1k chr03 62 456 151518 151517 F 395 0.00 1281 reject_low 13 ALIGNMENT 0 Y12-16a05.q1k chr14 456 62 102524 102523 C 395 0.00 1281 reject_low 4 ALIGNMENT 0 Y12-16a05.q1k chr09 877 789 197138 197137 C 89 0.00 1281 reject_low 20 ALIGNMENT 0 Y12-16a05.q1k chr08 456 62 543942 543941 C 395 0.00 1281 reject_low 12 ALIGNMENT 0 Y12-16a05.q1k chr02 62 456 226624 226623 F 395 0.00 1281 reject_low 2 ALIGNMENT 23 Y12-16a05.p1k chr04 161 61 1290925 1291025 C 101 85.15 1356 reject_low 23 ALIGNMENT 0 Y12-16a05.q1k chr06 769 877 158663 158662 F 109 0.00 1281 reject_low 25 ALIGNMENT 1008 Y12-16a05.q1k chr05 35 1255 137800 139032 F 1221 95.99 1281 accept 0 ALIGNMENT 0 Y12-16a05.p1k chr05 124 774 81252 81251 F 651 0.00 1356 reject_low 28 ALIGNMENT 172 Y12-16a05.q1k chr09 788 457 197137 197485 C 332 86.14 1281 reject_low 20 ALIGNMENT 143 Y12-16a05.q1k chr06 460 723 137658 137907 F 264 89.39 1281 reject_low 21 ALIGNMENT 71 Y12-16a05.q1k chr10 607 457 203885 204035 C 151 84.11 1281 reject_low 29 ALIGNMENT 0 Y12-16a05.q1k chr01 456 62 166164 166163 C 395 0.00 1281 reject_low 18 ALIGNMENT 24 Y12-16a05.p1k chr16 53 154 650480 650581 F 102 85.29 1356 reject_low 24 ALIGNMENT 0 Y12-16a05.q1k chr10 456 62 204036 204035 C 395 0.00 1281 reject_low 29 ALIGNMENT 0 Y12-16a05.q1k chr15 790 877 123627 123626 F 88 0.00 1281 reject_low 6 ALIGNMENT 224 Y12-16a05.q1k chr03 457 779 151518 151838 F 323 92.26 1281 reject_low 13 ALIGNMENT 0 Y12-16a05.q1k chr06 62 456 137908 137907 F 395 0.00 1281 reject_low 26 ALIGNMENT 0 Y12-16a05.q1k chr15 62 456 600403 600402 F 395 0.00 1281 reject_low 11 ALIGNMENT 0 Y12-16a05.q1k chr01 456 62 160576 160575 C 395 0.00 1281 reject_low 17 ALIGNMENT 0 Y12-16a05.q1k chr14 877 791 96610 96609 C 87 0.00 1281 reject_low 1 ALIGNMENT 92 Y12-16a05.q1k chr06 457 779 143535 143856 F 323 79.26 1281 reject_low 27 ALIGNMENT 246 Y12-16a05.q1k chr02 457 789 226624 226955 F 333 93.39 1281 reject_low 2 ALIGNMENT 0 Y12-16a05.q1k chr06 62 456 143535 143534 F 395 0.00 1281 reject_low 27 ALIGNMENT 664 Y12-16a08.p1k chr13 1092 42 898163 899225 C 1051 88.39 1388 accept 0 ALIGNMENT 633 Y12-16a08.q1k chr13 33 723 894093 894782 F 691 98.41 1392 accept 0 ALIGNMENT 844 Y12-16a09.q1k chr14 34 991 355115 356075 F 958 96.66 1348 accept 0 ALIGNMENT 947 Y12-16a09.p1k chr14 1127 21 357890 359004 C 1107 95.30 1429 accept 0 ALIGNMENT 903 Y12-16a10.q1k chr14 37 1043 598655 599668 F 1007 97.12 1431 accept 0 ALIGNMENT 874 Y12-16a10.p1k chr14 1032 23 602552 603572 C 1010 96.73 1361 accept 0 ALIGNMENT 899 Y12-16a10.q1k chr14 1073 37 572530 573576 C 1037 96.24 1431 reject_low 1 ALIGNMENT 0 Y12-16a11.q1k chr04 62 267 1453314 1453313 F 206 0.00 1322 reject_low 1 ALIGNMENT 0 Y12-16a11.p1k chr04 873 62 1385497 1385496 C 812 0.00 1336 reject_low 2 ALIGNMENT 0 Y12-16a11.p1k chr05 62 874 31453 31452 F 813 0.00 1336 reject_low 4 ALIGNMENT 0 Y12-16a11.p1k chr02 62 878 646103 646102 F 817 0.00 1336 reject_low 3 ALIGNMENT 0 Y12-16a11.p1k chr01 62 875 31117 31116 F 814 0.00 1336 reject_low 5 ALIGNMENT 981 Y12-16a11.q1k chr12 1191 35 515484 516631 C 1157 95.85 1322 accept 0 ALIGNMENT 867 Y12-16a11.p1k chr12 21 1086 512283 513360 F 1066 95.31 1336 accept 0 ALIGNMENT 20 Y12-16a11.p1k chr01 876 906 31117 31147 F 31 100.00 1336 reject_low 5 ALIGNMENT 387 Y12-16a11.q1k chr04 268 1059 1453314 1454102 F 792 83.33 1322 reject_low 1 ALIGNMENT 20 Y12-16a11.p1k chr02 879 910 646103 646134 F 32 100.00 1336 reject_low 3 ALIGNMENT 20 Y12-16a11.p1k chr05 875 905 31453 31483 F 31 100.00 1336 reject_low 4 ALIGNMENT 22 Y12-16a11.p1k chr04 908 874 1385462 1385496 C 35 100.00 1336 reject_low 2 ALIGNMENT 0 Y12-16a12.q1k chr03 863 739 199397 199396 C 125 0.00 1348 reject_low 1 ALIGNMENT 710 Y12-16a12.p1k chr03 15 804 289318 290109 F 790 97.85 1341 accept 0 ALIGNMENT 0 Y12-16a12.q1k chr03 863 739 12240 12239 C 125 0.00 1348 reject_low 2 ALIGNMENT 669 Y12-16a12.q1k chr03 738 38 199396 200096 C 701 100.00 1348 reject_low 1 ALIGNMENT 662 Y12-16a12.q1k chr03 738 38 12239 12941 C 701 99.71 1348 reject_low 2 ALIGNMENT 874 Y12-16a12.q1k chr03 1122 38 292647 293730 C 1085 95.76 1348 accept 0 ALIGNMENT 964 Y12-16a13.p1k chr15 20 1157 731656 732813 F 1138 96.40 1386 accept 0 ALIGNMENT 960 Y12-16a13.q1k chr15 1144 34 735561 736675 C 1111 96.67 1248 accept 0 ALIGNMENT 141 Y12-16a15.p1k chr15 24 179 1083498 1083656 F 156 98.08 1423 reject_low 2 ALIGNMENT 61 Y12-16a15.p1k chr14 21 133 782563 782677 F 113 86.73 1423 reject_low 6 ALIGNMENT 856 Y12-16a15.p1k chr13 180 1167 479499 480493 F 988 96.86 1423 accept 0 ALIGNMENT 0 Y12-16a15.p1k chr12 134 905 1063673 1063672 F 772 0.00 1423 reject_low 5 ALIGNMENT 60 Y12-16a15.p1k chr12 133 21 12686 12800 C 113 86.73 1423 reject_low 8 ALIGNMENT 52 Y12-16a15.p1k chr02 131 21 7210 7322 C 111 84.68 1423 reject_low 12 ALIGNMENT 57 Y12-16a15.p1k chr15 133 21 11154 11268 C 113 85.84 1423 reject_low 10 ALIGNMENT 0 Y12-16a15.p1k chr15 905 134 11155 11154 C 772 0.00 1423 reject_low 10 ALIGNMENT 0 Y12-16a15.p1k chr14 134 905 782677 782676 F 772 0.00 1423 reject_low 6 ALIGNMENT 0 Y12-16a15.p1k chr11 905 134 1410 1409 C 772 0.00 1423 reject_low 7 ALIGNMENT 0 Y12-16a15.p1k chr04 134 905 1524000 1523999 F 772 0.00 1423 reject_low 4 ALIGNMENT 64 Y12-16a15.p1k chr12 21 133 1063559 1063673 F 113 87.61 1423 reject_low 5 ALIGNMENT 0 Y12-16a15.p1k chr01 905 134 1406 1405 C 772 0.00 1423 reject_low 11 ALIGNMENT 0 Y12-16a15.p1k chr15 180 905 1083656 1083655 F 726 0.00 1423 reject_low 2 ALIGNMENT 0 Y12-16a15.p1k chr12 905 134 12687 12686 C 772 0.00 1423 reject_low 8 ALIGNMENT 60 Y12-16a15.p1k chr11 133 21 1409 1523 C 113 86.73 1423 reject_low 7 ALIGNMENT 64 Y12-16a15.p1k chr04 21 133 1523886 1524000 F 113 87.61 1423 reject_low 4 ALIGNMENT 0 Y12-16a15.p1k chr13 180 905 923460 923459 F 726 0.00 1423 reject_low 1 ALIGNMENT 0 Y12-16a15.p1k chr13 62 179 479499 479498 F 118 0.00 1423 accept 0 ALIGNMENT 0 Y12-16a15.p1k chr09 905 134 8389 8388 C 772 0.00 1423 reject_low 9 ALIGNMENT 149 Y12-16a15.p1k chr13 21 179 923301 923460 F 159 98.74 1423 reject_low 1 ALIGNMENT 138 Y12-16a15.p1k chr16 179 24 7485 7643 C 156 97.44 1423 reject_low 3 ALIGNMENT 58 Y12-16a15.p1k chr01 133 38 1405 1501 C 96 88.54 1423 reject_low 11 ALIGNMENT 0 Y12-16a15.p1k chr16 905 180 7486 7485 C 726 0.00 1423 reject_low 3 ALIGNMENT 616 Y12-16a15.q1k chr13 755 36 483300 484021 C 720 96.53 1320 accept 0 ALIGNMENT 0 Y12-16a15.p1k chr02 905 132 7211 7210 C 774 0.00 1423 reject_low 12 ALIGNMENT 57 Y12-16a15.p1k chr09 133 21 8388 8502 C 113 85.84 1423 reject_low 9 ALIGNMENT 888 Y12-16a16.q1k chr11 1105 29 130466 131552 C 1077 95.26 1324 accept 0 ALIGNMENT 1031 Y12-16a16.p1k chr11 28 1197 127534 128720 F 1170 96.58 1424 accept 0 ALIGNMENT 621 Y12-16a18.q1k chr08 751 37 183867 184592 C 715 97.06 1299 accept 0 ALIGNMENT 1019 Y12-16a18.p1k chr08 22 1242 180343 181575 F 1221 95.58 1434 accept 0 ALIGNMENT 922 Y12-16a19.q1k chr15 38 1125 116076 117168 F 1088 96.14 1220 accept 0 ALIGNMENT 941 Y12-16a19.p1k chr15 1102 19 126833 127929 C 1084 96.96 1314 accept 0 ALIGNMENT 954 Y12-16a21.p1k chr12 19 1162 779718 780873 F 1144 95.19 1330 accept 0 ALIGNMENT 940 Y12-16a21.q1k chr12 1199 36 782857 784020 C 1164 94.24 1202 accept 0 ALIGNMENT 888 Y12-16a22.p1k chr08 16 1092 490925 492026 F 1077 95.17 1269 accept 0 ALIGNMENT 296 Y12-16a22.q1k chr08 359 33 495342 495668 C 327 97.86 1346 accept 0 ALIGNMENT 1010 Y12-16a23.q1k chr12 35 1170 401694 402833 F 1136 97.27 1170 accept 0 ALIGNMENT 1017 Y12-16a23.p1k chr12 1155 23 404988 406125 C 1133 97.44 1300 accept 0 ALIGNMENT 1033 Y12-16a24.q1k chr15 1227 32 847577 848768 C 1196 96.91 1229 accept 0 ALIGNMENT 1000 Y12-16a24.p1k chr15 25 1203 843847 845041 F 1179 96.61 1251 accept 0 ALIGNMENT 0 Y12-16b01.p1k chr16 120 131 777359 777348 F 12 0.00 1396 reject_low 1,2,3 ALIGNMENT 0 Y12-16b01.q1k chr16 894 210 786238 786237 C 685 0.00 1315 reject_low 2 ALIGNMENT 32 Y12-16b01.q1k chr16 323 241 786294 786376 C 83 79.52 1315 reject_low 3 ALIGNMENT 0 Y12-16b01.p1k chr16 343 864 777562 777561 F 522 0.00 1396 reject_low 1,2,3 ALIGNMENT 25 Y12-16b01.q1k chr16 74 35 786399 786438 C 40 87.50 1315 accept 0 reject_low 2,3 ALIGNMENT 0 Y12-16b01.q1k chr16 894 324 786295 786294 C 571 0.00 1315 reject_low 3 ALIGNMENT 0 Y12-16b01.q1k chr16 240 75 786377 786398 C 166 0.00 1315 reject_low 3 ALIGNMENT 0 Y12-16b01.q1k chr16 122 75 786324 786398 C 48 0.00 1315 reject_low 2 ALIGNMENT 140 Y12-16b01.p1k chr16 132 342 777349 777562 F 211 90.52 1396 reject_low 1,2,3 ALIGNMENT 62 Y12-16b01.p1k chr16 36 119 777275 777358 F 84 92.86 1396 reject_low 1,2,3 ALIGNMENT 1044 Y12-16b01.p1k chr16 36 1211 781703 782892 F 1176 97.36 1396 accept 0 ALIGNMENT 816 Y12-16b01.q1k chr16 1203 180 785342 786380 C 1024 94.04 1315 accept 0 ALIGNMENT 0 Y12-16b01.q1k chr16 179 75 786381 786398 C 105 0.00 1315 accept 0 ALIGNMENT 178 Y12-16b01.q1k chr16 266 54 786237 786449 C 213 94.84 1315 reject_low 1 ALIGNMENT 38 Y12-16b01.q1k chr16 209 123 786237 786323 C 87 81.61 1315 reject_low 2 ALIGNMENT 0 Y12-16b01.q1k chr16 894 267 786238 786237 C 628 0.00 1315 reject_low 1 ALIGNMENT 987 Y12-16b02.q1k chr02 27 1126 18182 19292 F 1100 96.73 1312 accept 0 ALIGNMENT 883 Y12-16b02.p1k chr02 1148 29 21636 22775 C 1120 94.64 1347 accept 0 ALIGNMENT 984 Y12-16b04.p1k chr13 24 1176 72352 73521 F 1153 96.44 1372 accept 0 ALIGNMENT 989 Y12-16b04.q1k chr13 1133 34 75815 76933 C 1100 97.64 1326 accept 0 ALIGNMENT 919 Y12-16b05.p1k chr04 1112 18 1064110 1065195 C 1095 96.44 1472 accept 0 ALIGNMENT 1037 Y12-16b05.q1k chr04 35 1270 1061034 1062256 F 1236 96.04 1374 accept 0 ALIGNMENT 0 Y12-16b06.p1k chr07 781 521 519037 519036 C 261 0.00 1412 reject_low 10 ALIGNMENT 0 Y12-16b06.p1k chr07 781 725 519037 519036 C 57 0.00 1412 accept 0 ALIGNMENT 121 Y12-16b06.p1k chr07 571 360 519036 519247 C 212 86.79 1412 reject_low 8 ALIGNMENT 271 Y12-16b06.p1k chr07 775 411 519036 519400 C 365 92.05 1412 reject_low 2 ALIGNMENT 0 Y12-16b06.p1k chr07 781 572 519037 519036 C 210 0.00 1412 reject_low 8 ALIGNMENT 0 Y12-16b06.p1k chr07 359 62 519299 519298 C 298 0.00 1412 reject_low 6 ALIGNMENT 263 Y12-16b06.p1k chr07 826 462 519036 519400 C 365 91.78 1412 reject_low 3 ALIGNMENT 0 Y12-16b06.p1k chr07 410 62 519401 519400 C 349 0.00 1412 reject_low 2 ALIGNMENT 0 Y12-16b06.p1k chr07 461 62 519401 519400 C 400 0.00 1412 reject_low 3 ALIGNMENT 0 Y12-16b06.p1k chr07 781 623 519037 519036 C 159 0.00 1412 reject_low 6 ALIGNMENT 0 Y12-16b06.p1k chr07 563 62 519401 519400 C 502 0.00 1412 reject_low 5 ALIGNMENT 0 Y12-16b06.p1k chr07 359 62 519350 519349 C 298 0.00 1412 reject_low 4 ALIGNMENT 164 Y12-16b06.p1k chr07 877 615 519138 519400 C 263 88.21 1412 reject_low 7 ALIGNMENT 0 Y12-16b06.p1k chr07 359 62 519197 519196 C 298 0.00 1412 reject_low 10 ALIGNMENT 203 Y12-16b06.p1k chr07 877 564 519087 519400 C 314 88.85 1412 reject_low 5 ALIGNMENT 74 Y12-16b06.p1k chr07 877 717 519240 519400 C 161 83.23 1412 reject_low 11 ALIGNMENT 403 Y12-16b06.p1k chr07 1112 513 518794 519400 C 600 90.00 1412 reject_low 1 ALIGNMENT 0 Y12-16b06.p1k chr07 359 62 519248 519247 C 298 0.00 1412 reject_low 8 ALIGNMENT 0 Y12-16b06.p1k chr07 614 62 519401 519400 C 553 0.00 1412 reject_low 7 ALIGNMENT 990 Y12-16b06.q1k chr07 30 1214 515253 516454 F 1185 95.86 1357 accept 0 ALIGNMENT 223 Y12-16b06.p1k chr07 673 360 519036 519349 C 314 91.08 1412 reject_low 4 ALIGNMENT 656 Y12-16b06.p1k chr07 724 24 519036 519737 C 701 98.57 1412 accept 0 ALIGNMENT 0 Y12-16b06.p1k chr07 716 62 519401 519400 C 655 0.00 1412 reject_low 11 ALIGNMENT 184 Y12-16b06.p1k chr07 622 360 519036 519298 C 263 90.87 1412 reject_low 6 ALIGNMENT 107 Y12-16b06.p1k chr07 877 666 519189 519400 C 212 84.43 1412 reject_low 9 ALIGNMENT 90 Y12-16b06.p1k chr07 520 360 519036 519196 C 161 86.34 1412 reject_low 10 ALIGNMENT 0 Y12-16b06.p1k chr07 665 62 519401 519400 C 604 0.00 1412 reject_low 9 ALIGNMENT 0 Y12-16b06.p1k chr07 781 674 519037 519036 C 108 0.00 1412 reject_low 4 ALIGNMENT 0 Y12-16b06.p1k chr07 512 62 519401 519400 C 451 0.00 1412 reject_low 1 ALIGNMENT 168 Y12-16b07.p1k chr09 522 768 196650 196896 F 247 91.90 1381 reject_low 13 ALIGNMENT 171 Y12-16b07.p1k chr04 768 522 437270 437515 C 247 92.31 1381 reject_low 9 ALIGNMENT 383 Y12-16b07.q1k chr01 467 31 192645 193082 C 437 97.03 1379 reject_bad_break 0 ALIGNMENT 147 Y12-16b07.p1k chr01 346 521 182954 183129 F 176 96.59 1381|3,0 reject_bad_break 0 ALIGNMENT 168 Y12-16b07.p1k chr02 522 768 35848 36094 F 247 91.90 1381 reject_low 10 ALIGNMENT 168 Y12-16b07.p1k chr16 522 768 442739 442985 F 247 91.90 1381 reject_low 18 ALIGNMENT 89 Y12-16b07.p1k chr07 245 335 561658 561748 F 91 100.00 1381 reject_low 2 ALIGNMENT 0 Y12-16b07.p1k chr10 521 62 197835 197834 C 460 0.00 1381 reject_low 14 ALIGNMENT 168 Y12-16b07.p1k chr10 768 522 203443 203689 C 247 91.90 1381 reject_low 15 ALIGNMENT 0 Y12-16b07.p1k chr13 62 521 808536 808535 F 460 0.00 1381 reject_low 3 ALIGNMENT 178 Y12-16b07.p1k chr13 522 768 808536 808781 F 247 93.12 1381 reject_low 3 ALIGNMENT 109 Y12-16b07.p1k chr15 768 601 703897 704063 C 168 90.48 1381|0,3 reject_low 20 ALIGNMENT 171 Y12-16b07.p1k chr08 768 519 91511 91760 C 250 92.00 1381 reject_low 8 ALIGNMENT 0 Y12-16b07.p1k chr07 519 62 111232 111231 C 458 0.00 1381 reject_low 7 ALIGNMENT 168 Y12-16b07.p1k chr08 768 522 85659 85905 C 247 91.90 1381 reject_low 12 ALIGNMENT 0 Y12-16b07.p1k chr05 62 521 354356 354355 F 460 0.00 1381 reject_low 6 ALIGNMENT 168 Y12-16b07.p1k chr10 768 522 197588 197834 C 247 91.90 1381 reject_low 14 ALIGNMENT 162 Y12-16b07.p1k chr14 522 768 632121 632367 F 247 91.09 1381 reject_low 19 ALIGNMENT 92 Y12-16b07.p1k chr05 338 245 86600 86693 C 94 100.00 1381 reject_low 1 ALIGNMENT 0 Y12-16b07.p1k chr14 62 521 632121 632120 F 460 0.00 1381 reject_low 19 ALIGNMENT 73 Y12-16b07.p1k chr15 605 517 710025 710113 C 89 98.88 1381|2,0 reject_low 20 ALIGNMENT 173 Y12-16b07.p1k chr07 768 520 110983 111231 C 249 92.37 1381 reject_low 7 ALIGNMENT 174 Y12-16b07.p1k chr05 522 768 354356 354602 F 247 92.71 1381 reject_low 6 ALIGNMENT 175 Y12-16b07.p1k chr02 518 768 643479 643729 F 251 92.43 1381 reject_low 4 ALIGNMENT 0 Y12-16b07.p1k chr16 62 521 442739 442738 F 460 0.00 1381 reject_low 18 ALIGNMENT 168 Y12-16b07.p1k chr14 768 515 561732 561985 C 254 91.34 1381 reject_low 5 ALIGNMENT 0 Y12-16b07.p1k chr09 62 521 196650 196649 F 460 0.00 1381 reject_low 13 ALIGNMENT 0 Y12-16b07.p1k chr08 518 62 91761 91760 C 457 0.00 1381 reject_low 8 ALIGNMENT 0 Y12-16b07.p1k chr05 645 339 86601 86600 C 307 0.00 1381 reject_low 1 ALIGNMENT 0 Y12-16b07.p1k chr16 62 521 436887 436886 F 460 0.00 1381 reject_low 17 ALIGNMENT 0 Y12-16b07.p1k chr15 516 62 710114 710113 C 455 0.00 1381 reject_low 20 ALIGNMENT 0 Y12-16b07.p1k chr10 521 62 203690 203689 C 460 0.00 1381 reject_low 15 ALIGNMENT 0 Y12-16b07.p1k chr01 522 645 183129 183128 F 124 0.00 1381 reject_bad_break 0 ALIGNMENT 0 Y12-16b07.p1k chr05 244 62 86694 86693 C 183 0.00 1381 reject_low 1 ALIGNMENT 0 Y12-16b07.p1k chr07 336 645 561748 561747 F 310 0.00 1381 reject_low 2 ALIGNMENT 0 Y12-16b07.p1k chr02 62 517 643479 643478 F 456 0.00 1381 reject_low 4 ALIGNMENT 323 Y12-16b07.p1k chr01 17 351 182280 182614 F 335 99.40 1381|0,3 reject_bad_break 0 ALIGNMENT 0 Y12-16b07.p1k chr08 521 62 85906 85905 C 460 0.00 1381 reject_low 12 ALIGNMENT 0 Y12-16b07.p1k chr07 62 244 561658 561657 F 183 0.00 1381 reject_low 2 ALIGNMENT 168 Y12-16b07.p1k chr07 522 768 931174 931419 F 247 91.90 1381 reject_low 11 ALIGNMENT 168 Y12-16b07.p1k chr13 768 522 503894 504140 C 247 91.90 1381 reject_low 16 ALIGNMENT 0 Y12-16b07.p1k chr07 62 521 931174 931173 F 460 0.00 1381 reject_low 11 ALIGNMENT 0 Y12-16b07.p1k chr15 603 604 704061 710026 C 0 0.00 1381 reject_low 20 ALIGNMENT 0 Y12-16b07.p1k chr14 514 62 561986 561985 C 453 0.00 1381 reject_low 5 ALIGNMENT 0 Y12-16b07.p1k chr01 349 348 182612 182956 F 0 0.00 1381 reject_bad_break 0 ALIGNMENT 168 Y12-16b07.p1k chr16 522 768 436887 437133 F 247 91.90 1381 reject_low 17 ALIGNMENT 0 Y12-16b07.p1k chr13 521 62 504141 504140 C 460 0.00 1381 reject_low 16 ALIGNMENT 0 Y12-16b07.p1k chr04 521 62 437516 437515 C 460 0.00 1381 reject_low 9 ALIGNMENT 0 Y12-16b07.p1k chr02 62 521 35848 35847 F 460 0.00 1381 reject_low 10 ALIGNMENT 806 Y12-16b08.p1k chr02 917 19 379072 379970 C 899 97.44 1415 accept 0 ALIGNMENT 785 Y12-16b08.q1k chr02 31 929 375953 376850 F 899 96.22 1386 accept 0 ALIGNMENT 905 Y12-16b09.q1k chr15 1087 33 796106 797179 C 1055 96.02 1418 accept 0 ALIGNMENT 920 Y12-16b09.p1k chr15 16 1065 793328 794386 F 1050 97.33 1436 accept 0 ALIGNMENT 929 Y12-16b10.p1k chr12 21 1088 452185 453256 F 1068 95.97 1418 accept 0 ALIGNMENT 862 Y12-16b10.q1k chr12 1050 39 465182 466194 C 1012 95.65 1469 accept 1 ALIGNMENT 862 Y12-16b10.q1k chr12 1050 39 456045 457057 C 1012 95.65 1469 accept 0 ALIGNMENT 0 Y12-16b10.p1k chr12 411 834 490543 490542 F 424 0.00 1418 reject_low 2 ALIGNMENT 378 Y12-16b10.p1k chr12 21 410 490153 490543 F 390 99.23 1418 reject_low 2 ALIGNMENT 929 Y12-16b10.p1k chr12 21 1088 461322 462393 F 1068 95.97 1418 accept 1 ALIGNMENT 298 Y12-16b12.q1k chr14 405 74 102192 102523 C 332 98.49 1375 reject_low 9 ALIGNMENT 0 Y12-16b12.q1k chr01 728 406 160240 160239 C 323 0.00 1375 reject_low 20 ALIGNMENT 0 Y12-16b12.q1k chr14 728 406 102193 102192 C 323 0.00 1375 reject_low 9 ALIGNMENT 0 Y12-16b12.q1k chr02 406 728 221373 221372 F 323 0.00 1375 reject_low 10 ALIGNMENT 302 Y12-16b12.q1k chr13 406 74 357003 357335 C 333 98.80 1375 reject_low 3 ALIGNMENT 0 Y12-16b12.q1k chr08 728 407 116416 116415 C 322 0.00 1375 reject_low 7 ALIGNMENT 0 Y12-16b12.q1k chr01 728 406 165828 165827 C 323 0.00 1375 reject_low 21 ALIGNMENT 60 Y12-16b12.q1k chr07 282 382 817289 817387 F 101 89.11 1375 reject_low 23 ALIGNMENT 0 Y12-16b12.q1k chr02 386 728 265472 265471 F 343 0.00 1375 reject_low 16 ALIGNMENT 0 Y12-16b12.q1k chr15 386 728 595132 595131 F 343 0.00 1375 reject_low 12 ALIGNMENT 0 Y12-16b12.q1k chr15 74 405 227140 227134 F 332 0.00 1375 reject_bad_break 0 ALIGNMENT 280 Y12-16b12.q1k chr02 74 385 265161 265472 F 312 98.72 1375 reject_low 16 ALIGNMENT 0 Y12-16b12.q1k chr15 322 728 594759 594758 F 407 0.00 1375 reject_low 22 ALIGNMENT 0 Y12-16b12.q1k chr07 62 281 817289 817288 F 220 0.00 1375 reject_low 23 ALIGNMENT 0 Y12-16b12.q1k chr08 728 386 543631 543630 C 343 0.00 1375 reject_low 17 ALIGNMENT 0 Y12-16b12.q1k chr15 386 728 600714 600713 F 343 0.00 1375 reject_low 15 ALIGNMENT 34 Y12-16b12.q1k chr15 34 73 227100 227139 F 40 100.00 1375 reject_bad_break 0 ALIGNMENT 289 Y12-16b12.q1k chr11 409 67 457779 458121 C 343 96.79 1375 reject_low 1 ALIGNMENT 0 Y12-16b12.q1k chr13 386 728 184481 184480 F 343 0.00 1375 reject_low 11 ALIGNMENT 0 Y12-16b12.q1k chr13 728 407 357004 357003 C 322 0.00 1375 reject_low 3 ALIGNMENT 85 Y12-16b12.q1k chr15 180 321 594618 594759 F 142 89.44 1375 reject_low 22 ALIGNMENT 0 Y12-16b12.q1k chr07 407 728 535547 535546 F 322 0.00 1375 reject_low 4 ALIGNMENT 302 Y12-16b12.q1k chr11 406 74 517094 517426 C 333 98.80 1375 reject_low 2 ALIGNMENT 305 Y12-16b12.q1k chr15 406 856 227135 227598 F 451 92.02 1375 reject_bad_break 0 ALIGNMENT 289 Y12-16b12.q1k chr02 73 405 221039 221373 F 333 97.60 1375 reject_low 10 ALIGNMENT 286 Y12-16b12.q1k chr15 70 385 594817 595132 F 316 99.05 1375 reject_low 12 ALIGNMENT 280 Y12-16b12.q1k chr08 385 74 543630 543941 C 312 98.72 1375 reject_low 17 ALIGNMENT 301 Y12-16b12.q1k chr13 405 74 362586 362917 C 332 98.80 1375 reject_low 6 ALIGNMENT 0 Y12-16b12.q1k chr13 386 728 190063 190062 F 343 0.00 1375 reject_low 18 ALIGNMENT 0 Y12-16b12.q1k chr10 406 728 472714 472713 F 323 0.00 1375 reject_low 19 ALIGNMENT 285 Y12-16b12.q1k chr07 385 72 823000 823313 C 314 99.04 1375 reject_low 13 ALIGNMENT 0 Y12-16b12.q1k chr07 728 386 817419 817418 C 343 0.00 1375 reject_low 14 ALIGNMENT 300 Y12-16b12.q1k chr07 73 406 535214 535547 F 334 98.50 1375 reject_low 4 ALIGNMENT 0 Y12-16b12.q1k chr11 728 410 457780 457779 C 319 0.00 1375 reject_low 1 ALIGNMENT 205 Y12-16b12.q1k chr01 405 74 165827 166163 C 332 89.46 1375 reject_low 21 ALIGNMENT 283 Y12-16b12.q1k chr13 67 385 184163 184481 F 319 98.43 1375 reject_low 11 ALIGNMENT 283 Y12-16b12.q1k chr15 74 385 600403 600714 F 312 99.04 1375 reject_low 15 ALIGNMENT 205 Y12-16b12.q1k chr01 405 74 160239 160575 C 332 89.46 1375 reject_low 20 ALIGNMENT 283 Y12-16b12.q1k chr07 385 74 817418 817729 C 312 99.04 1375 reject_low 14 ALIGNMENT 0 Y12-16b12.q1k chr14 728 407 96610 96609 C 322 0.00 1375 reject_low 8 ALIGNMENT 301 Y12-16b12.q1k chr02 74 405 226624 226955 F 332 98.80 1375 reject_low 5 ALIGNMENT 0 Y12-16b12.q1k chr02 406 728 226955 226954 F 323 0.00 1375 reject_low 5 ALIGNMENT 299 Y12-16b12.q1k chr14 406 74 96609 96941 C 333 98.50 1375 reject_low 8 ALIGNMENT 0 Y12-16b12.q1k chr14 104 728 102578 102577 F 625 0.00 1375 reject_low 24 ALIGNMENT 0 Y12-16b12.q1k chr13 728 406 362587 362586 C 323 0.00 1375 reject_low 6 ALIGNMENT 269 Y12-16b12.q1k chr10 74 405 472377 472714 F 332 95.78 1375 reject_low 19 ALIGNMENT 0 Y12-16b12.q1k chr11 728 407 517095 517094 C 322 0.00 1375 reject_low 2 ALIGNMENT 1011 Y12-16b12.p1k chr15 1201 21 229487 230668 C 1181 96.44 1466 reject_bad_break 0 ALIGNMENT 0 Y12-16b12.q1k chr07 383 728 817387 817386 F 346 0.00 1375 reject_low 23 ALIGNMENT 0 Y12-16b12.q1k chr15 62 179 594618 594617 F 118 0.00 1375 reject_low 22 ALIGNMENT 26 Y12-16b12.q1k chr14 74 103 102549 102578 F 30 96.67 1375 reject_low 24 ALIGNMENT 0 Y12-16b12.q1k chr07 728 386 823001 823000 C 343 0.00 1375 reject_low 13 ALIGNMENT 299 Y12-16b12.q1k chr08 406 74 116415 116747 C 333 98.50 1375 reject_low 7 ALIGNMENT 280 Y12-16b12.q1k chr13 74 385 189752 190063 F 312 98.72 1375 reject_low 18 ALIGNMENT 808 Y12-16b13.q1k chr10 31 905 464252 465123 F 875 97.94 1368 accept 0 ALIGNMENT 799 Y12-16b13.p1k chr10 916 3 468583 469499 C 914 96.61 1372 accept 0 ALIGNMENT 98 Y12-16b15.q1k chr03 695 553 142933 143077 C 143 92.31 1335 reject_low 22 ALIGNMENT 0 Y12-16b15.q1k chr08 62 700 91387 91386 F 639 0.00 1335 reject_low 7 ALIGNMENT 0 Y12-16b15.q1k chr08 62 560 133680 133679 F 499 0.00 1335 reject_low 20 ALIGNMENT 0 Y12-16b15.q1k chr07 595 820 931733 931732 F 226 0.00 1335 reject_low 26 ALIGNMENT 0 Y12-16b15.q1k chr03 552 62 143078 143077 C 491 0.00 1335 reject_low 22 ALIGNMENT 940 Y12-16b15.p1k chr10 1145 28 200412 201531 C 1118 96.06 1389 reject_low 3 ALIGNMENT 0 Y12-16b15.q1k chr14 700 62 632492 632491 C 639 0.00 1335 reject_low 11 ALIGNMENT 0 Y12-16b15.q1k chr14 62 700 561608 561607 F 639 0.00 1335 reject_low 9 ALIGNMENT 218 Y12-16b15.q1k chr05 983 701 354450 354726 C 283 95.05 1335 reject_low 13 ALIGNMENT 0 Y12-16b15.q1k chr16 700 62 443110 443109 C 639 0.00 1335 reject_low 1 ALIGNMENT 0 Y12-16b15.q1k chr07 62 552 931691 931690 F 491 0.00 1335 reject_low 26 ALIGNMENT 218 Y12-16b15.q1k chr02 983 701 643577 643853 C 283 95.05 1335 reject_low 12 ALIGNMENT 212 Y12-16b15.q1k chr15 701 983 703773 704049 F 283 94.35 1335 reject_low 15 ALIGNMENT 74 Y12-16b15.q1k chr09 695 552 197342 197486 C 144 86.11 1335 reject_low 17 ALIGNMENT 27 Y12-16b15.q1k chr07 553 594 931691 931733 F 42 92.86 1335 reject_low 26 ALIGNMENT 230 Y12-16b15.q1k chr10 701 1071 203319 203676 F 371 90.57 1335 reject_low 24 ALIGNMENT 0 Y12-16b15.q1k chr08 820 696 116604 116603 C 125 0.00 1335 reject_low 19 ALIGNMENT 0 Y12-16b15.q1k chr15 62 700 703773 703772 F 639 0.00 1335 reject_low 15 ALIGNMENT 0 Y12-16b15.q1k chr03 820 696 142934 142933 C 125 0.00 1335 reject_low 22 ALIGNMENT 145 Y12-16b15.q1k chr14 701 859 96451 96609 F 159 98.11 1335 reject_low 23 ALIGNMENT 0 Y12-16b15.q1k chr09 820 424 210662 210661 C 397 0.00 1335 reject_low 4 ALIGNMENT 505 Y12-16b15.q1k chr12 700 37 734525 735210 C 664 93.98 1335 accept 0 ALIGNMENT 233 Y12-16b15.q1k chr13 681 1071 503749 504127 F 391 89.77 1335 reject_low 5 ALIGNMENT 0 Y12-16b15.q1k chr07 62 700 110859 110858 F 639 0.00 1335 reject_low 10 ALIGNMENT 28 Y12-16b15.q1k chr10 553 601 197414 197463 F 49 89.80 1335 reject_low 3,24 ALIGNMENT 0 Y12-16b15.q1k chr03 552 62 124463 124462 C 491 0.00 1335 reject_low 21 ALIGNMENT 0 Y12-16b15.q1k chr09 551 62 197487 197486 C 490 0.00 1335 reject_low 17 ALIGNMENT 0 Y12-16b15.q1k chr14 820 696 561519 561518 C 125 0.00 1335 reject_low 27 ALIGNMENT 0 Y12-16b15.q1k chr02 700 62 36219 36218 C 639 0.00 1335 reject_low 6 ALIGNMENT 0 Y12-16b15.q1k chr12 820 701 734526 734525 C 120 0.00 1335 accept 0 ALIGNMENT 98 Y12-16b15.q1k chr03 695 553 124318 124462 C 143 92.31 1335 reject_low 21 ALIGNMENT 0 Y12-16b15.q1k chr02 700 62 643854 643853 C 639 0.00 1335 reject_low 12 ALIGNMENT 230 Y12-16b15.q1k chr10 701 1071 197464 197821 F 371 90.57 1335 reject_low 3 ALIGNMENT 94 Y12-16b15.q1k chr08 561 700 133680 133820 F 140 91.43 1335 reject_low 20 ALIGNMENT 215 Y12-16b15.q1k chr07 701 1071 110859 111216 F 371 89.22 1335 reject_low 10 ALIGNMENT 224 Y12-16b15.q1k chr16 1069 701 436901 437257 C 369 89.97 1335 reject_low 8 ALIGNMENT 0 Y12-16b15.q1k chr10 602 700 197464 203318 F 99 0.00 1335 reject_low 24 ALIGNMENT 215 Y12-16b15.q1k chr13 983 701 808629 808905 C 283 94.70 1335 reject_low 14 ALIGNMENT 0 Y12-16b15.q1k chr08 820 696 91953 91952 C 125 0.00 1335 reject_low 25 ALIGNMENT 912 Y12-16b15.p1k chr16 24 1145 439040 440165 F 1122 95.19 1389 reject_low 1 ALIGNMENT 0 Y12-16b15.q1k chr09 339 62 210745 210744 C 278 0.00 1335 reject_low 4 ALIGNMENT 0 Y12-16b15.q1k chr03 820 696 124319 124318 C 125 0.00 1335 reject_low 21 ALIGNMENT 0 Y12-16b15.q1k chr04 62 700 437146 437145 F 639 0.00 1335 reject_low 16 ALIGNMENT 916 Y12-16b15.p1k chr08 1145 28 88480 89599 C 1118 95.35 1389 reject_low 2 ALIGNMENT 0 Y12-16b15.q1k chr07 700 62 931544 931543 C 639 0.00 1335 reject_low 18 ALIGNMENT 20 Y12-16b15.q1k chr14 695 668 561518 561545 C 28 92.86 1335 reject_low 27 ALIGNMENT 0 Y12-16b15.q1k chr09 700 696 197021 197341 C 5 0.00 1335 reject_low 17 ALIGNMENT 0 Y12-16b15.q1k chr05 700 62 354727 354726 C 639 0.00 1335 reject_low 13 ALIGNMENT 219 Y12-16b15.q1k chr14 983 701 632215 632491 C 283 95.05 1335 reject_low 11 ALIGNMENT 230 Y12-16b15.q1k chr09 1071 701 196663 197020 C 371 90.57 1335 reject_low 17 ALIGNMENT 45 Y12-16b15.q1k chr08 695 553 91952 92095 C 143 80.42 1335 reject_low 25 ALIGNMENT 230 Y12-16b15.q1k chr02 1071 701 35861 36218 C 371 90.57 1335 reject_low 6 ALIGNMENT 218 Y12-16b15.q1k chr14 701 1071 561608 561965 F 371 89.49 1335 reject_low 9 ALIGNMENT 0 Y12-16b15.q1k chr08 701 820 133820 133819 F 120 0.00 1335 reject_low 20 ALIGNMENT 0 Y12-16b15.q1k chr10 62 552 197414 197413 F 491 0.00 1335 reject_low 3,24 ALIGNMENT 0 Y12-16b15.q1k chr10 602 700 197464 197463 F 99 0.00 1335 reject_low 3 ALIGNMENT 224 Y12-16b15.q1k chr08 701 1069 85535 85891 F 369 89.97 1335 reject_low 2 ALIGNMENT 224 Y12-16b15.q1k chr08 701 1069 91387 91743 F 369 89.97 1335 reject_low 7 ALIGNMENT 0 Y12-16b15.q1k chr14 62 700 96451 96450 F 639 0.00 1335 reject_low 23 ALIGNMENT 0 Y12-16b15.q1k chr08 548 62 116752 116751 C 487 0.00 1335 reject_low 19 ALIGNMENT 102 Y12-16b15.q1k chr08 695 549 116603 116751 C 147 92.52 1335 reject_low 19 ALIGNMENT 0 Y12-16b15.q1k chr08 552 62 92096 92095 C 491 0.00 1335 reject_low 25 ALIGNMENT 197 Y12-16b15.q1k chr07 983 701 931267 931543 C 283 92.58 1335 reject_low 18 ALIGNMENT 0 Y12-16b15.q1k chr13 62 680 503749 503748 F 619 0.00 1335 reject_low 5 ALIGNMENT 0 Y12-16b15.q1k chr08 62 700 85535 85534 F 639 0.00 1335 reject_low 2 ALIGNMENT 224 Y12-16b15.q1k chr16 1069 701 442753 443109 C 369 89.97 1335 reject_low 1 ALIGNMENT 0 Y12-16b15.q1k chr14 667 62 561546 561545 C 606 0.00 1335 reject_low 27 ALIGNMENT 0 Y12-16b15.q1k chr16 700 62 437258 437257 C 639 0.00 1335 reject_low 8 ALIGNMENT 203 Y12-16b15.q1k chr04 701 983 437146 437422 F 283 93.29 1335 reject_low 16 ALIGNMENT 78 Y12-16b15.q1k chr09 423 340 210661 210744 C 84 97.62 1335 reject_low 4 ALIGNMENT 0 Y12-16b15.q1k chr13 700 62 808906 808905 C 639 0.00 1335 reject_low 14 ALIGNMENT 993 Y12-16b16.q1k chr16 1180 38 727346 728499 C 1143 97.20 1326 accept 0 ALIGNMENT 862 Y12-16b16.p1k chr16 16 1002 724382 725366 F 987 97.06 1423 accept 0 ALIGNMENT 814 Y12-16b17.q1k chr12 35 967 458433 459365 F 933 97.43 1343 accept 0 ALIGNMENT 814 Y12-16b17.q1k chr12 35 967 467570 468502 F 933 97.43 1343 reject_low 2 ALIGNMENT 860 Y12-16b17.p1k chr12 911 17 453680 454575 C 895 99.11 1401 reject_low 1 ALIGNMENT 860 Y12-16b17.p1k chr12 911 17 462817 463712 C 895 99.11 1401 accept 0 ALIGNMENT 0 Y12-16b18.p1k chr04 275 62 477233 477232 C 214 0.00 1311 reject_low 1 ALIGNMENT 0 Y12-16b18.p1k chr04 862 404 477109 477108 C 459 0.00 1311 reject_low 1 ALIGNMENT 89 Y12-16b18.p1k chr04 403 276 477108 477232 C 128 92.97 1311 reject_low 1 ALIGNMENT 871 Y12-16b18.p1k chr15 999 20 450761 451755 C 980 97.65 1311 accept 0 ALIGNMENT 767 Y12-16b18.q1k chr15 35 995 448420 449378 F 961 95.32 1315 accept 0 ALIGNMENT 1006 Y12-16b19.q1k chr05 39 1197 87207 88373 F 1159 95.60 1282 accept 0 ALIGNMENT 988 Y12-16b19.p1k chr05 1173 21 88632 89804 C 1153 96.27 1338 accept 0 ALIGNMENT 0 Y12-16b21.q1k chr12 62 290 485696 485695 F 229 0.00 1232 reject_low 7 ALIGNMENT 0 Y12-16b21.q1k chr12 622 875 460015 460014 F 254 0.00 1232 reject_low 3 ALIGNMENT 0 Y12-16b21.q1k chr12 62 290 472464 472463 F 229 0.00 1232 reject_low 5 ALIGNMENT 119 Y12-16b21.q1k chr12 291 409 472464 472582 F 119 100.00 1232 reject_low 5 ALIGNMENT 0 Y12-16b21.q1k chr12 410 875 468930 468929 F 466 0.00 1232 reject_low 2 ALIGNMENT 0 Y12-16b21.q1k chr12 425 875 489481 489480 F 451 0.00 1232 reject_low 4 ALIGNMENT 0 Y12-16b21.q1k chr12 410 875 482162 482161 F 466 0.00 1232 reject_low 6 ALIGNMENT 0 Y12-16b21.q1k chr12 62 290 482044 482043 F 229 0.00 1232 reject_low 6 ALIGNMENT 0 Y12-16b21.q1k chr12 62 290 489348 489347 F 229 0.00 1232 reject_low 4 ALIGNMENT 365 Y12-16b21.q1k chr12 33 409 468555 468930 F 377 99.73 1232 reject_low 2 ALIGNMENT 0 Y12-16b21.q1k chr12 410 875 485814 485813 F 466 0.00 1232 reject_low 7 ALIGNMENT 119 Y12-16b21.q1k chr12 291 409 485696 485814 F 119 100.00 1232 reject_low 7 ALIGNMENT 1079 Y12-16b21.p1k chr12 1260 16 453454 454702 C 1245 96.14 1348 reject_low 1 ALIGNMENT 868 Y12-16b21.q1k chr12 33 1231 459418 460655 F 1199 92.41 1232 accept 0 ALIGNMENT 0 Y12-16b21.q1k chr12 62 221 459606 459605 F 160 0.00 1232 reject_low 3 ALIGNMENT 360 Y12-16b21.q1k chr12 222 621 459606 460015 F 400 97.50 1232 reject_low 3 ALIGNMENT 1078 Y12-16b21.p1k chr12 1253 16 462598 463839 C 1238 96.28 1348 accept 0 ALIGNMENT 128 Y12-16b21.q1k chr12 291 424 489348 489481 F 134 98.51 1232 reject_low 4 ALIGNMENT 0 Y12-16b21.q1k chr12 410 875 472582 472581 F 466 0.00 1232 reject_low 5 ALIGNMENT 119 Y12-16b21.q1k chr12 291 409 482044 482162 F 119 100.00 1232 reject_low 6 ALIGNMENT 1031 Y12-16b22.p1k chr04 21 1158 218745 219884 F 1138 97.63 1364 accept 0 ALIGNMENT 0 Y12-16b22.p1k chr04 62 939 123868 123867 F 878 0.00 1364 reject_low 1 ALIGNMENT 998 Y12-16b22.q1k chr04 1109 36 222671 223748 C 1074 98.23 1255 accept 0 ALIGNMENT 84 Y12-16b22.p1k chr04 940 1158 123868 124088 F 219 79.45 1364 reject_low 1 ALIGNMENT 913 Y12-16b23.p1k chr05 29 1134 441967 443086 F 1106 94.85 1265 accept_trans 0 ALIGNMENT 0 Y12-16b23.p1k chr15 850 62 664288 664287 C 789 0.00 1265 reject_low 1 ALIGNMENT 33 Y12-16b23.p1k chr15 951 851 664187 664287 C 101 79.21 1265 reject_low 1 ALIGNMENT 163 Y12-16b23.q1k chr05 619 389 452372 452591 C 231 90.04 1410 accept_trans 0 ALIGNMENT 1025 Y12-16b24.p1k chr12 1273 21 52568 53829 C 1253 94.97 1284 accept 0 ALIGNMENT 896 Y12-16c01.p1k chr03 23 1041 15940 16972 F 1019 96.96 1378 accept 0 ALIGNMENT 908 Y12-16c01.q1k chr03 1154 38 19900 21030 C 1117 95.79 1275 accept 0 ALIGNMENT 723 Y12-16c03.p1k chr13 827 21 845338 846147 C 807 97.40 1486 accept 0 ALIGNMENT 0 Y12-16c03.q1k chr03 435 62 20619 20618 C 374 0.00 1300 reject_low 1 ALIGNMENT 225 Y12-16c03.q1k chr03 905 436 20156 20618 C 470 84.47 1300 reject_low 1 ALIGNMENT 289 Y12-16c03.q1k chr13 29 433 842179 842586 F 405 92.35 1300 accept 0 ALIGNMENT 1005 Y12-16c04.p1k chr12 24 1154 460966 462100 F 1131 96.91 1411 accept 1 ALIGNMENT 918 Y12-16c04.q1k chr12 1086 35 463703 464765 C 1052 96.67 1282 accept 1 ALIGNMENT 918 Y12-16c04.q1k chr12 1086 35 454566 455628 C 1052 96.67 1282 accept 0 ALIGNMENT 1005 Y12-16c04.p1k chr12 24 1154 451829 452963 F 1131 96.91 1411 accept 0 ALIGNMENT 0 Y12-16c04.p1k chr12 771 850 490543 490542 F 80 0.00 1411 reject_low 2 ALIGNMENT 719 Y12-16c04.p1k chr12 24 770 489797 490543 F 747 98.93 1411 reject_low 2 ALIGNMENT 878 Y12-16c07.q1k chr12 36 1040 457976 458983 F 1005 97.21 1291 accept 0 ALIGNMENT 878 Y12-16c07.q1k chr12 36 1040 467113 468120 F 1005 97.21 1291 reject_low 1 ALIGNMENT 869 Y12-16c07.p1k chr12 960 19 462537 463489 C 942 97.98 1375 accept 0 ALIGNMENT 869 Y12-16c07.p1k chr12 960 19 453400 454352 C 942 97.98 1375 reject_low 2 ALIGNMENT 804 Y12-16c08.q1k chr06 32 1049 81094 82103 F 1018 94.60 1401 accept 0 ALIGNMENT 844 Y12-16c08.p1k chr06 986 16 84159 85133 C 971 97.12 1451 accept 0 ALIGNMENT 816 Y12-16c09.q1k chr04 981 32 678783 679738 C 950 96.00 1278 accept 0 ALIGNMENT 956 Y12-16c09.p1k chr04 21 1160 675443 676600 F 1140 95.35 1395 accept 0 ALIGNMENT 884 Y12-16c10.p1k chr15 18 1081 147781 148853 F 1064 95.68 1423 accept 0 ALIGNMENT 945 Y12-16c10.q1k chr15 1093 35 151699 152765 C 1059 97.83 1341 accept 0 ALIGNMENT 24 Y12-16c11.q1k chr02 471 520 464124 464173 F 50 90.00 1282 reject_low 1 ALIGNMENT 759 Y12-16c11.p1k chr02 13 931 61121 62037 F 919 95.43 1470 accept 0 ALIGNMENT 0 Y12-16c11.q1k chr02 521 697 464173 464172 F 177 0.00 1282 reject_low 1 ALIGNMENT 0 Y12-16c11.q1k chr02 62 470 464124 464123 F 409 0.00 1282 reject_low 1 ALIGNMENT 731 Y12-16c11.q1k chr02 806 34 65646 66417 C 773 98.97 1282 accept 0 ALIGNMENT 1021 Y12-16c13.q1k chr15 36 1241 649936 651156 F 1206 96.02 1274 accept 0 ALIGNMENT 993 Y12-16c13.p1k chr15 1121 20 654185 655292 C 1102 97.28 1431 accept 0 ALIGNMENT 505 Y12-16c14.p1k chr12 547 17 489754 490285 C 531 98.68 1433 reject_low 3 ALIGNMENT 0 Y12-16c14.p1k chr12 860 548 489755 489754 C 313 0.00 1433 reject_low 3 ALIGNMENT 786 Y12-16c14.p1k chr12 894 17 451419 452317 C 878 97.04 1433 reject_low 2 ALIGNMENT 920 Y12-16c14.q1k chr12 39 1059 457243 458271 F 1021 97.36 1325 accept 0 ALIGNMENT 928 Y12-16c14.p1k chr12 1216 17 460213 461454 C 1200 93.58 1433 accept 0 ALIGNMENT 920 Y12-16c14.q1k chr12 39 1059 466380 467408 F 1021 97.36 1325 reject_low 1 ALIGNMENT 984 Y12-16c15.p1k chr11 1116 16 197384 198493 C 1101 97.64 1408 accept 0 ALIGNMENT 856 Y12-16c15.q1k chr11 34 1009 194213 195191 F 976 96.93 1272 accept 0 ALIGNMENT 984 Y12-16c16.p1k chr04 21 1128 636888 637997 F 1108 97.56 1397 accept 0 ALIGNMENT 780 Y12-16c16.q1k chr04 901 33 641052 641916 C 869 98.16 1418 accept 0 ALIGNMENT 1024 Y12-16c17.p1k chr03 27 1277 45958 47204 F 1251 94.48 1488 accept 0 ALIGNMENT 980 Y12-16c17.q1k chr03 1188 37 50132 51270 C 1152 96.09 1290 accept 0 ALIGNMENT 0 Y12-16c19.q1k chr06 62 662 117251 117250 F 601 0.00 1227 reject_low 1 ALIGNMENT 961 Y12-16c19.q1k chr05 36 1133 289048 290153 F 1098 96.90 1227 accept 0 ALIGNMENT 1038 Y12-16c19.p1k chr05 1253 19 292043 293290 C 1235 95.30 1423 accept 0 ALIGNMENT 306 Y12-16c19.q1k chr06 663 1119 117251 117714 F 457 90.37 1227 reject_low 1 ALIGNMENT 871 Y12-16c20.p1k chr16 18 1052 361337 362383 F 1035 96.52 1324 accept 0 ALIGNMENT 690 Y12-16c20.q1k chr16 790 35 364874 365628 C 756 97.62 1301 accept 0 ALIGNMENT 966 Y12-16c21.p1k chr02 25 1251 739718 740952 F 1227 93.72 1379 accept 0 ALIGNMENT 881 Y12-16c21.q1k chr02 1111 35 744451 745523 C 1077 95.26 1212 accept 0 ALIGNMENT 1040 Y12-16c22.p1k chr16 1210 19 384015 385217 C 1192 96.81 1360 accept 0 ALIGNMENT 1019 Y12-16c22.q1k chr16 37 1217 381242 382430 F 1181 96.44 1247 accept 0 ALIGNMENT 891 Y12-16c24.p1k chr10 19 1103 447984 449063 F 1085 95.48 1294 accept 0 ALIGNMENT 1005 Y12-16c24.q1k chr10 1227 37 452307 453489 C 1191 96.05 1227 accept 0 ALIGNMENT 92 Y12-16d01.q1k chr15 173 1 160425 160605 C 173 85.55 343 accept 0 ALIGNMENT 926 Y12-16d01.p1k chr15 18 1107 157738 158837 F 1090 96.06 1391 accept 0 ALIGNMENT 791 Y12-16d02.p1k chr15 967 21 89076 90019 C 947 95.78 1388 accept 0 ALIGNMENT 649 Y12-16d02.q1k chr15 39 851 85014 85831 F 813 94.59 1413 accept 0 ALIGNMENT 792 Y12-16d03.q1k chr11 37 900 385826 386691 F 864 98.38 1347 accept 0 ALIGNMENT 872 Y12-16d03.p1k chr11 1043 20 390310 391348 C 1024 96.78 1389 accept 0 ALIGNMENT 934 Y12-16d04.p1k chr12 1123 27 456081 457189 C 1097 95.08 1400 accept 0 ALIGNMENT 968 Y12-16d04.q1k chr12 34 1113 463418 464499 F 1080 97.13 1333 accept 1 ALIGNMENT 968 Y12-16d04.q1k chr12 34 1113 454281 455362 F 1080 97.13 1333 accept 0 ALIGNMENT 934 Y12-16d04.p1k chr12 1123 27 465218 466326 C 1097 95.08 1400 accept 1 ALIGNMENT 931 Y12-16d05.p1k chr07 1100 27 340822 341903 C 1074 96.83 1433 accept 0 ALIGNMENT 874 Y12-16d05.q1k chr07 33 1101 335507 336579 F 1069 95.04 1387 accept 0 ALIGNMENT 934 Y12-16d06.p1k chr07 23 1105 612750 613830 F 1083 96.12 1445 accept 0 ALIGNMENT 939 Y12-16d06.q1k chr07 1125 30 614507 615600 C 1096 96.26 1387 accept 0 ALIGNMENT 308 Y12-16d07.q1k chr04 225 682 1503969 1504411 F 458 90.61 1454 reject_bad_break 0 ALIGNMENT 879 Y12-16d07.p1k chr04 1006 15 1506908 1507898 C 992 96.67 1503 reject_bad_break 0 ALIGNMENT 38 Y12-16d07.q1k chr04 228 272 1503828 1503872 F 45 95.56 1454 reject_low 1,2,3,4 ALIGNMENT 0 Y12-16d07.q1k chr04 273 323 1503873 1504262 F 51 0.00 1454 reject_low 1 ALIGNMENT 0 Y12-16d07.q1k chr04 111 227 1503807 1503827 F 117 0.00 1454 reject_low 1,2,3,4 ALIGNMENT 0 Y12-16d07.q1k chr04 111 224 1503807 1503968 F 114 0.00 1454 reject_bad_break 0 ALIGNMENT 0 Y12-16d07.q1k chr04 273 533 1503873 1504067 F 261 0.00 1454 reject_low 4 ALIGNMENT 0 Y12-16d07.q1k chr04 273 350 1503873 1504289 F 78 0.00 1454 reject_low 2 ALIGNMENT 232 Y12-16d07.q1k chr04 351 682 1504290 1504621 F 332 90.06 1454 reject_low 2 ALIGNMENT 0 Y12-16d07.q1k chr15 256 567 1060654 1060653 F 312 0.00 1454 reject_low 5 ALIGNMENT 0 Y12-16d07.q1k chr15 256 584 1060923 1060922 F 329 0.00 1454 reject_low 6 ALIGNMENT 239 Y12-16d07.q1k chr04 324 653 1504263 1504592 F 330 90.91 1454 reject_low 1 ALIGNMENT 0 Y12-16d07.q1k chr04 273 323 1503873 1504472 F 51 0.00 1454 reject_low 3 ALIGNMENT 61 Y12-16d07.q1k chr04 32 110 1503729 1503806 F 79 94.94 1454 reject_bad_break 0 reject_low 1,2,3,4 ALIGNMENT 31 Y12-16d07.q1k chr15 568 680 1060654 1060766 F 113 76.11 1454 reject_low 5 ALIGNMENT 26 Y12-16d07.q1k chr15 585 620 1060923 1060958 F 36 91.67 1454 reject_low 6 ALIGNMENT 142 Y12-16d07.q1k chr04 324 510 1504473 1504659 F 187 91.98 1454 reject_low 3 ALIGNMENT 94 Y12-16d07.q1k chr04 534 709 1504068 1504243 F 176 84.66 1454 reject_low 4 ALIGNMENT 22 Y12-16d09.q1k chr13 552 473 587633 587712 C 80 86.25 1365 reject_low 4 ALIGNMENT 21 Y12-16d09.q1k chr07 490 540 467706 467756 F 51 92.16 1365 reject_low 7 ALIGNMENT 27 Y12-16d09.p1k chr04 705 745 340281 340320 F 41 97.56 1442 reject_low 1 ALIGNMENT 808 Y12-16d09.p1k chr12 18 1083 696273 697316 F 1066 94.56 1442 accept 0 ALIGNMENT 22 Y12-16d09.q1k chr04 552 473 390405 390484 C 80 86.25 1365 reject_low 3 ALIGNMENT 0 Y12-16d09.q1k chr07 501 62 431461 431460 C 440 0.00 1365 reject_low 5 ALIGNMENT 0 Y12-16d09.q1k chr04 883 553 390406 390405 C 331 0.00 1365 reject_low 3 ALIGNMENT 0 Y12-16d09.q1k chr07 541 883 467756 467755 F 343 0.00 1365 reject_low 7 ALIGNMENT 0 Y12-16d09.q1k chr04 472 62 390485 390484 C 411 0.00 1365 reject_low 3 ALIGNMENT 0 Y12-16d09.p1k chr04 746 777 340320 340319 F 32 0.00 1442 reject_low 1 ALIGNMENT 37 Y12-16d09.q1k chr13 580 475 587632 587737 C 106 87.74 1365 reject_low 2 ALIGNMENT 0 Y12-16d09.q1k chr07 62 489 467706 467705 F 428 0.00 1365 reject_low 7 ALIGNMENT 0 Y12-16d09.q1k chr07 883 553 431411 431410 C 331 0.00 1365 reject_low 5 ALIGNMENT 0 Y12-16d09.q1k chr13 489 62 87006 87005 C 428 0.00 1365 reject_low 6 ALIGNMENT 0 Y12-16d09.q1k chr13 474 62 587738 587737 C 413 0.00 1365 reject_low 2 ALIGNMENT 26 Y12-16d09.q1k chr07 552 502 431410 431460 C 51 98.04 1365 reject_low 5 ALIGNMENT 0 Y12-16d09.q1k chr13 883 553 86944 86943 C 331 0.00 1365 reject_low 6 ALIGNMENT 998 Y12-16d09.q1k chr12 1214 34 700528 701716 C 1181 96.36 1365 accept 0 ALIGNMENT 0 Y12-16d09.q1k chr13 883 581 587633 587632 C 303 0.00 1365 reject_low 2 ALIGNMENT 0 Y12-16d09.q1k chr13 472 62 587713 587712 C 411 0.00 1365 reject_low 4 ALIGNMENT 0 Y12-16d09.p1k chr04 62 704 340281 340280 F 643 0.00 1442 reject_low 1 ALIGNMENT 24 Y12-16d09.q1k chr13 552 490 86943 87005 C 63 92.06 1365 reject_low 6 ALIGNMENT 0 Y12-16d09.q1k chr13 883 553 587634 587633 C 331 0.00 1365 reject_low 4 ALIGNMENT 864 Y12-16d10.q1k chr14 994 36 669052 670012 C 959 97.60 1365 accept 0 ALIGNMENT 851 Y12-16d10.p1k chr14 13 1072 664460 665535 F 1060 94.62 1384 accept 0 ALIGNMENT 833 Y12-16d11.p1k chr02 949 22 373942 374864 C 928 97.52 1486 accept 0 ALIGNMENT 790 Y12-16d11.q1k chr02 35 942 370100 371011 F 908 97.03 1298 accept 0 ALIGNMENT 871 Y12-16d12.q1k chr14 1003 38 276963 277926 C 966 97.83 1410 accept 0 ALIGNMENT 887 Y12-16d12.p1k chr14 18 994 273752 274727 F 977 97.85 1405 accept 0 ALIGNMENT 903 Y12-16d13.q1k chr04 1141 33 663797 664902 C 1109 95.13 1323 accept 0 ALIGNMENT 890 Y12-16d13.p1k chr04 21 1072 659318 660389 F 1052 96.10 1353 accept 0 ALIGNMENT 943 Y12-16d14.q1k chr16 1104 38 367152 368227 C 1067 97.28 1310 accept 0 ALIGNMENT 933 Y12-16d14.p1k chr16 20 1092 363906 364992 F 1073 96.55 1363 accept 0 ALIGNMENT 1001 Y12-16d15.p1k chr10 18 1197 583126 584327 F 1180 96.36 1428 accept 0 ALIGNMENT 772 Y12-16d15.q1k chr10 900 35 586839 587701 C 866 98.04 1342 accept 0 ALIGNMENT 1015 Y12-16d16.q1k chr04 37 1160 1489195 1490328 F 1124 97.86 1312 accept 0 ALIGNMENT 806 Y12-16d16.p1k chr04 889 22 1492436 1493302 C 868 99.08 1441 accept 0 ALIGNMENT 864 Y12-16d17.q1k chr12 28 1128 467293 468392 F 1101 94.46 1314 reject_low 1 ALIGNMENT 924 Y12-16d17.p1k chr12 1110 22 461595 462682 C 1089 95.32 1425 accept 0 ALIGNMENT 923 Y12-16d17.p1k chr12 1096 22 452472 453545 C 1075 95.63 1425 reject_low 2 ALIGNMENT 864 Y12-16d17.q1k chr12 28 1128 458156 459255 F 1101 94.46 1314 accept 0 ALIGNMENT 748 Y12-16d18.p1k chr02 17 861 666455 667296 F 845 96.80 1394 accept 0 ALIGNMENT 662 Y12-16d18.q1k chr02 759 26 671436 672169 C 734 97.96 1282 accept 0 ALIGNMENT 981 Y12-16d19.q1k chr12 34 1240 265593 266794 F 1207 95.19 1301 accept 0 ALIGNMENT 865 Y12-16d19.p1k chr12 961 14 268649 269601 C 948 98.42 1411 accept 0 ALIGNMENT 934 Y12-16d20.q1k chr16 37 1133 674840 675945 F 1097 96.54 1275 accept 0 ALIGNMENT 927 Y12-16d20.p1k chr16 1166 19 679505 680668 C 1148 95.03 1350 accept 0 ALIGNMENT 971 Y12-16d21.p1k chr01 19 1130 150029 151154 F 1112 97.21 1334 accept 0 ALIGNMENT 879 Y12-16d21.q1k chr01 1116 34 154341 155419 C 1083 94.64 1251 accept 0 ALIGNMENT 828 Y12-16d22.q1k chr16 31 890 647260 648119 F 860 99.30 1319 accept 0 ALIGNMENT 996 Y12-16d22.p1k chr16 1151 18 651542 652688 C 1134 96.83 1317 accept 0 ALIGNMENT 955 Y12-16d23.p1k chr09 1205 28 329982 331152 C 1178 94.82 1329 accept 0 ALIGNMENT 468 Y12-16d23.q1k chr09 29 516 326916 327403 F 488 99.39 1327 accept 0 ALIGNMENT 988 Y12-16d24.q1k chr07 1232 36 357443 358651 C 1197 94.90 1232 accept 0 ALIGNMENT 993 Y12-16d24.p1k chr07 19 1267 353891 355138 F 1249 94.88 1318 accept 0 ALIGNMENT 0 Y12-16e01.q1k chr03 544 94 20520 20519 C 451 0.00 1400 reject_low 1 ALIGNMENT 341 Y12-16e01.q1k chr14 509 34 72196 72669 C 476 92.23 1400 accept 0 ALIGNMENT 87 Y12-16e01.q1k chr03 745 545 20320 20519 C 201 82.09 1400 reject_low 1 ALIGNMENT 968 Y12-16e01.p1k chr14 18 1091 66316 67398 F 1074 97.86 1353 accept 0 ALIGNMENT 848 Y12-16e02.q1k chr16 1068 28 251719 252757 C 1041 95.58 1337 accept 0 ALIGNMENT 25 Y12-16e02.q1k chr16 564 445 536680 536799 C 120 85.83 1337 reject_low 1 ALIGNMENT 0 Y12-16e02.q1k chr05 871 536 79218 79217 C 336 0.00 1337 reject_low 3 ALIGNMENT 0 Y12-16e02.q1k chr03 523 871 234927 234926 F 349 0.00 1337 reject_low 4 ALIGNMENT 0 Y12-16e02.q1k chr16 500 62 252354 252353 C 439 0.00 1337 reject_low 2 ALIGNMENT 0 Y12-16e02.q1k chr16 871 554 252302 252301 C 318 0.00 1337 reject_low 2 ALIGNMENT 26 Y12-16e02.q1k chr16 553 501 252301 252353 C 53 94.34 1337 reject_low 2 ALIGNMENT 0 Y12-16e02.q1k chr16 871 565 536681 536680 C 307 0.00 1337 reject_low 1 ALIGNMENT 20 Y12-16e02.q1k chr03 484 522 234889 234927 F 39 97.44 1337 reject_low 4 ALIGNMENT 0 Y12-16e02.q1k chr05 490 62 79262 79261 C 429 0.00 1337 reject_low 3 ALIGNMENT 927 Y12-16e02.p1k chr16 16 1119 248146 249268 F 1104 95.83 1375 accept 0 ALIGNMENT 24 Y12-16e02.q1k chr05 535 491 79217 79261 C 45 95.56 1337 reject_low 3 ALIGNMENT 0 Y12-16e02.q1k chr03 62 483 234889 234888 F 422 0.00 1337 reject_low 4 ALIGNMENT 0 Y12-16e02.q1k chr16 444 62 536800 536799 C 383 0.00 1337 reject_low 1 ALIGNMENT 0 Y12-16e03.q1k chr13 532 62 209912 209911 C 471 0.00 1294 reject_low 2 ALIGNMENT 997 Y12-16e03.q1k chr11 1246 35 279350 280563 C 1212 95.38 1294 accept 0 ALIGNMENT 0 Y12-16e03.q1k chr13 532 62 354230 354229 C 471 0.00 1294 reject_low 3 ALIGNMENT 0 Y12-16e03.q1k chr15 576 905 63091 63090 F 330 0.00 1294 reject_low 1 ALIGNMENT 22 Y12-16e03.q1k chr13 571 533 354191 354229 C 39 92.31 1294 reject_low 3 ALIGNMENT 0 Y12-16e03.q1k chr13 905 572 354192 354191 C 334 0.00 1294 reject_low 3 ALIGNMENT 0 Y12-16e03.q1k chr13 905 574 209872 209871 C 332 0.00 1294 reject_low 2 ALIGNMENT 0 Y12-16e03.q1k chr15 62 539 63056 63055 F 478 0.00 1294 reject_low 1 ALIGNMENT 21 Y12-16e03.q1k chr04 571 534 604235 604272 C 38 92.11 1294 reject_low 4 ALIGNMENT 0 Y12-16e03.q1k chr04 533 62 604273 604272 C 472 0.00 1294 reject_low 4 ALIGNMENT 24 Y12-16e03.q1k chr13 573 533 209871 209911 C 41 92.68 1294 reject_low 2 ALIGNMENT 26 Y12-16e03.q1k chr15 540 575 63056 63091 F 36 97.22 1294 reject_low 1 ALIGNMENT 0 Y12-16e03.q1k chr04 905 572 604236 604235 C 334 0.00 1294 reject_low 4 ALIGNMENT 931 Y12-16e03.p1k chr11 17 1123 277294 278404 F 1107 95.30 1420 accept 0 ALIGNMENT 1027 Y12-16e04.q1k chr07 1204 36 1063918 1065091 C 1169 96.32 1395 accept 0 ALIGNMENT 851 Y12-16e04.p1k chr07 27 1053 1060401 1061444 F 1027 95.62 1353 accept 0 ALIGNMENT 21 Y12-16e05.q1k chr02 783 816 780359 780392 F 34 97.06 1326 reject_low 2 ALIGNMENT 59 Y12-16e05.q1k chr07 948 863 279966 280050 C 86 90.70 1326 accept 0 ALIGNMENT 127 Y12-16e05.q1k chr07 1133 828 279787 280085 C 306 82.68 1326 reject_low 1 ALIGNMENT 20 Y12-16e05.q1k chr10 816 779 114868 114905 C 38 94.74 1326 reject_low 3 ALIGNMENT 0 Y12-16e05.q1k chr07 862 863 280051 280134 C 0 0.00 1326 accept 0 ALIGNMENT 0 Y12-16e05.q1k chr07 827 828 280086 280169 C 0 0.00 1326 reject_low 1 ALIGNMENT 0 Y12-16e05.q1k chr10 778 62 114906 114905 C 717 0.00 1326 reject_low 3 ALIGNMENT 0 Y12-16e05.q1k chr02 62 782 780359 780358 F 721 0.00 1326 reject_low 2 ALIGNMENT 766 Y12-16e05.q1k chr07 862 29 280135 280964 C 834 98.20 1326 accept 0 ALIGNMENT 78 Y12-16e05.q1k chr07 827 726 280170 280268 C 102 95.10 1326 reject_low 1 ALIGNMENT 931 Y12-16e05.p1k chr07 20 1152 275928 277059 F 1133 95.32 1414 accept 0 ALIGNMENT 0 Y12-16e05.q1k chr07 725 62 280269 280268 C 664 0.00 1326 reject_low 1 ALIGNMENT 0 Y12-16e06.q1k chr16 902 862 850639 850638 C 41 0.00 1353 reject_low 18 ALIGNMENT 153 Y12-16e06.q1k chr07 854 581 817418 817693 C 274 87.59 1353 reject_low 10 ALIGNMENT 150 Y12-16e06.q1k chr13 581 854 184206 184481 F 274 87.23 1353 reject_low 13 ALIGNMENT 0 Y12-16e06.q1k chr14 580 62 96906 96905 C 519 0.00 1353 reject_low 9 ALIGNMENT 138 Y12-16e06.q1k chr01 861 567 160252 160554 C 295 85.08 1353 reject_low 5 ALIGNMENT 112 Y12-16e06.q1k chr16 874 667 436247 436453 C 208 87.50 1353 reject_low 28 ALIGNMENT 0 Y12-16e06.q1k chr06 845 902 158654 158653 F 58 0.00 1353 reject_low 8 ALIGNMENT 153 Y12-16e06.q1k chr15 581 854 594857 595132 F 274 87.59 1353 reject_low 11 ALIGNMENT 0 Y12-16e06.q1k chr04 62 580 1095798 1095797 F 519 0.00 1353 reject_low 20 ALIGNMENT 0 Y12-16e06.q1k chr07 862 902 402280 402279 F 41 0.00 1353 reject_low 14 ALIGNMENT 154 Y12-16e06.q1k chr13 875 581 362585 362881 C 295 86.44 1353 reject_low 3 ALIGNMENT 66 Y12-16e06.q1k chr06 589 860 137952 138225 F 272 78.68 1353 reject_low 23 ALIGNMENT 124 Y12-16e06.q1k chr06 562 844 158372 158654 F 283 84.10 1353 reject_low 8 ALIGNMENT 0 Y12-16e06.q1k chr15 62 580 594857 594856 F 519 0.00 1353 reject_low 11 ALIGNMENT 139 Y12-16e06.q1k chr07 551 861 875963 876271 F 311 84.89 1353 reject_low 2 ALIGNMENT 0 Y12-16e06.q1k chr16 577 62 436556 436555 C 516 0.00 1353 reject_low 28 ALIGNMENT 130 Y12-16e06.q1k chr04 581 854 1095798 1096079 F 274 85.04 1353 reject_low 20 ALIGNMENT 84 Y12-16e06.q1k chr06 596 808 137702 137907 F 213 83.57 1353 reject_low 22 ALIGNMENT 0 Y12-16e06.q1k chr13 902 876 362586 362585 C 27 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-16e06.q1k chr13 902 875 357005 357004 C 28 0.00 1353 reject_low 4 ALIGNMENT 130 Y12-16e06.q1k chr15 581 854 117738 118019 F 274 85.04 1353 reject_low 21 ALIGNMENT 0 Y12-16e06.q1k chr10 862 902 540997 540996 F 41 0.00 1353 reject_low 16 ALIGNMENT 0 Y12-16e06.q1k chr13 855 902 184481 184480 F 48 0.00 1353 reject_low 13 ALIGNMENT 0 Y12-16e06.q1k chr07 62 735 817274 817273 F 674 0.00 1353 reject_low 26 ALIGNMENT 66 Y12-16e06.q1k chr06 589 860 143579 143852 F 272 78.68 1353 reject_low 24 ALIGNMENT 0 Y12-16e06.q1k chr01 902 862 160253 160252 C 41 0.00 1353 reject_low 5 ALIGNMENT 0 Y12-16e06.q1k chr06 62 561 158372 158371 F 500 0.00 1353 reject_low 8 ALIGNMENT 43 Y12-16e06.q1k chr07 736 851 817274 817387 F 116 82.76 1353 reject_low 26 ALIGNMENT 133 Y12-16e06.q1k chr16 861 581 850638 850926 C 281 85.05 1353 reject_low 18 ALIGNMENT 138 Y12-16e06.q1k chr01 861 567 165840 166142 C 295 85.08 1353 reject_low 6 ALIGNMENT 0 Y12-16e06.q1k chr06 62 588 137952 137951 F 527 0.00 1353 reject_low 23 ALIGNMENT 45 Y12-16e06.q1k chr01 983 921 182617 182678 C 63 93.65 1353 reject_low 1 ALIGNMENT 0 Y12-16e06.q1k chr08 580 62 543906 543905 C 519 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-16e06.q1k chr15 855 902 118019 118018 F 48 0.00 1353 reject_low 21 ALIGNMENT 0 Y12-16e06.q1k chr13 62 580 184206 184205 F 519 0.00 1353 reject_low 13 ALIGNMENT 0 Y12-16e06.q1k chr07 62 580 401998 401997 F 519 0.00 1353 reject_low 14 ALIGNMENT 0 Y12-16e06.q1k chr02 862 902 221360 221359 F 41 0.00 1353 reject_low 15 ALIGNMENT 0 Y12-16e06.q1k chr10 699 62 541180 541179 C 638 0.00 1353 reject_low 27 ALIGNMENT 0 Y12-16e06.q1k chr05 862 902 138540 138539 F 41 0.00 1353 reject_low 19 ALIGNMENT 862 Y12-16e06.q1k chr08 37 1242 466028 467246 F 1206 92.62 1353 accept 0 ALIGNMENT 0 Y12-16e06.q1k chr16 862 902 62362 62361 F 41 0.00 1353 reject_low 7 ALIGNMENT 0 Y12-16e06.q1k chr10 62 595 540731 540730 F 534 0.00 1353 reject_low 16 ALIGNMENT 0 Y12-16e06.q1k chr06 62 595 137702 137701 F 534 0.00 1353 reject_low 22 ALIGNMENT 0 Y12-16e06.q1k chr01 920 62 182679 182678 C 859 0.00 1353 reject_low 1 ALIGNMENT 0 Y12-16e06.q1k chr16 62 585 436093 436092 F 524 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-16e06.q1k chr13 580 62 362882 362881 C 519 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-16e06.q1k chr07 862 902 876271 876270 F 41 0.00 1353 reject_low 2 ALIGNMENT 126 Y12-16e06.q1k chr05 578 861 138254 138540 F 284 83.80 1353 reject_low 19 ALIGNMENT 140 Y12-16e06.q1k chr10 599 860 204036 204299 F 262 87.02 1353 reject_low 17 ALIGNMENT 138 Y12-16e06.q1k chr16 567 861 62060 62362 F 295 85.08 1353 reject_low 7 ALIGNMENT 147 Y12-16e06.q1k chr07 581 861 401998 402280 F 281 86.48 1353 reject_low 14 ALIGNMENT 0 Y12-16e06.q1k chr15 62 580 117738 117737 F 519 0.00 1353 reject_low 21 ALIGNMENT 0 Y12-16e06.q1k chr14 902 862 96624 96623 C 41 0.00 1353 reject_low 9 ALIGNMENT 0 Y12-16e06.q1k chr01 902 862 165841 165840 C 41 0.00 1353 reject_low 6 ALIGNMENT 0 Y12-16e06.q1k chr07 580 62 817694 817693 C 519 0.00 1353 reject_low 10 ALIGNMENT 153 Y12-16e06.q1k chr13 874 581 357004 357299 C 294 86.39 1353 reject_low 4 ALIGNMENT 0 Y12-16e06.q1k chr16 902 875 436248 436247 C 28 0.00 1353 reject_low 28 ALIGNMENT 997 Y12-16e06.p1k chr08 1195 23 470235 471421 C 1173 95.65 1431 accept 0 ALIGNMENT 0 Y12-16e06.q1k chr13 580 62 357300 357299 C 519 0.00 1353 reject_low 4 ALIGNMENT 0 Y12-16e06.q1k chr02 62 580 221076 221075 F 519 0.00 1353 reject_low 15 ALIGNMENT 0 Y12-16e06.q1k chr07 902 855 817419 817418 C 48 0.00 1353 reject_low 10 ALIGNMENT 0 Y12-16e06.q1k chr01 566 62 160555 160554 C 505 0.00 1353 reject_low 5 ALIGNMENT 146 Y12-16e06.q1k chr02 581 861 221076 221360 F 281 86.48 1353 reject_low 15 ALIGNMENT 153 Y12-16e06.q1k chr14 861 581 96623 96905 C 281 87.19 1353 reject_low 9 ALIGNMENT 0 Y12-16e06.q1k chr06 861 902 138225 138224 F 42 0.00 1353 reject_low 23 ALIGNMENT 31 Y12-16e06.q1k chr16 651 578 436481 436555 C 74 82.43 1353 reject_low 28 ALIGNMENT 0 Y12-16e06.q1k chr16 666 652 436454 436480 C 15 0.00 1353 reject_low 28 ALIGNMENT 0 Y12-16e06.q1k chr06 861 902 143852 143851 F 42 0.00 1353 reject_low 24 ALIGNMENT 0 Y12-16e06.q1k chr06 62 588 143579 143578 F 527 0.00 1353 reject_low 24 ALIGNMENT 0 Y12-16e06.q1k chr16 701 902 436207 436206 F 202 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-16e06.q1k chr10 62 598 204036 204035 F 537 0.00 1353 reject_low 17 ALIGNMENT 45 Y12-16e06.q1k chr16 586 700 436093 436207 F 115 82.61 1353 reject_low 25 ALIGNMENT 0 Y12-16e06.q1k chr01 566 62 166143 166142 C 505 0.00 1353 reject_low 6 ALIGNMENT 0 Y12-16e06.q1k chr05 62 577 138254 138253 F 516 0.00 1353 reject_low 19 ALIGNMENT 0 Y12-16e06.q1k chr07 852 902 817387 817386 F 51 0.00 1353 reject_low 26 ALIGNMENT 0 Y12-16e06.q1k chr15 855 902 595132 595131 F 48 0.00 1353 reject_low 11 ALIGNMENT 147 Y12-16e06.q1k chr10 596 861 540731 540997 F 266 87.22 1353 reject_low 16 ALIGNMENT 0 Y12-16e06.q1k chr08 902 855 543631 543630 C 48 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-16e06.q1k chr10 902 861 541024 541023 C 42 0.00 1353 reject_low 27 ALIGNMENT 0 Y12-16e06.q1k chr04 855 902 1096079 1096078 F 48 0.00 1353 reject_low 20 ALIGNMENT 0 Y12-16e06.q1k chr16 580 62 850927 850926 C 519 0.00 1353 reject_low 18 ALIGNMENT 0 Y12-16e06.q1k chr06 809 902 137907 137906 F 94 0.00 1353 reject_low 22 ALIGNMENT 32 Y12-16e06.q1k chr10 860 700 541023 541179 C 161 77.64 1353 reject_low 27 ALIGNMENT 150 Y12-16e06.q1k chr08 854 581 543630 543905 C 274 87.23 1353 reject_low 12 ALIGNMENT 0 Y12-16e06.q1k chr07 62 550 875963 875962 F 489 0.00 1353 reject_low 2 ALIGNMENT 0 Y12-16e06.q1k chr10 861 902 204299 204298 F 42 0.00 1353 reject_low 17 ALIGNMENT 0 Y12-16e06.q1k chr16 62 566 62060 62059 F 505 0.00 1353 reject_low 7 ALIGNMENT 784 Y12-16e09.q1k chr04 939 33 405734 406632 C 907 96.69 1392 accept 0 ALIGNMENT 866 Y12-16e09.p1k chr04 16 1018 401220 402227 F 1003 96.71 1428 accept 0 ALIGNMENT 794 Y12-16e10.p1k chr02 22 916 666711 667601 F 895 96.98 1566 accept 0 ALIGNMENT 737 Y12-16e10.q1k chr02 798 31 670624 671391 C 768 99.22 1377 accept 0 ALIGNMENT 862 Y12-16e11.q1k chr08 34 1017 210736 211721 F 984 97.46 1319 accept 0 ALIGNMENT 0 Y12-16e11.p1k chr08 737 408 212159 212158 C 330 0.00 1459 reject_low 1 ALIGNMENT 509 Y12-16e11.p1k chr08 1143 408 216066 216808 C 736 91.30 1459 accept 0 ALIGNMENT 243 Y12-16e11.p1k chr08 304 18 214265 214552 C 287 97.56 1459 reject_low 2 ALIGNMENT 0 Y12-16e11.p1k chr08 407 62 216809 216808 C 346 0.00 1459 accept 0 ALIGNMENT 0 Y12-16e11.p1k chr08 960 305 214256 214264 C 656 0.00 1459 reject_low 2 ALIGNMENT 313 Y12-16e11.p1k chr08 407 18 212158 212554 C 390 96.15 1459 reject_low 1 ALIGNMENT 45 Y12-16e11.p1k chr08 1143 961 214068 214255 C 183 77.05 1459 reject_low 2 ALIGNMENT 757 Y12-16e12.q1k chr03 35 866 101337 102168 F 832 98.32 1417 accept 0 ALIGNMENT 862 Y12-16e12.p1k chr03 1065 17 106538 107572 C 1049 95.71 1483 accept 0 ALIGNMENT 1065 Y12-16e13.p1k chr16 23 1274 83046 84310 F 1252 95.29 1462 accept 0 ALIGNMENT 1031 Y12-16e13.q1k chr16 1248 35 85848 87067 C 1214 95.80 1283 accept 0 ALIGNMENT 933 Y12-16e14.q1k chr02 39 1198 694309 695470 F 1160 95.78 1349 accept 0 ALIGNMENT 982 Y12-16e14.p1k chr02 1157 24 697476 698632 C 1134 96.56 1415 accept 0 ALIGNMENT 915 Y12-16e15.p1k chr04 35 1112 831879 832977 F 1078 95.83 1361 accept 0 ALIGNMENT 1009 Y12-16e15.q1k chr04 1142 40 836467 837569 C 1103 97.55 1292 accept 0 ALIGNMENT 944 Y12-16e16.q1k chr04 1156 37 1435485 1436617 C 1120 95.62 1312 accept 0 ALIGNMENT 946 Y12-16e16.p1k chr04 25 1209 1430952 1432119 F 1185 94.68 1459 accept 0 ALIGNMENT 954 Y12-16e17.p1k chr15 19 1116 591434 592546 F 1098 97.27 1375 accept 0 ALIGNMENT 963 Y12-16e17.q1k chr15 1237 38 602437 603650 C 1200 95.08 1266 accept 0 ALIGNMENT 0 Y12-16e18.p1k chr08 62 594 116101 116100 F 533 0.00 1371 reject_low 10 ALIGNMENT 0 Y12-16e18.p1k chr15 669 893 354112 354111 F 225 0.00 1371 reject_low 11 ALIGNMENT 0 Y12-16e18.p1k chr03 893 669 295481 295480 C 225 0.00 1371 reject_low 9 ALIGNMENT 74 Y12-16e18.p1k chr08 595 668 116101 116174 F 74 100.00 1371 reject_low 10 ALIGNMENT 74 Y12-16e18.p1k chr03 668 595 295480 295553 C 74 100.00 1371 reject_low 9 ALIGNMENT 77 Y12-16e18.p1k chr04 589 668 434254 434333 F 80 98.75 1371 reject_low 5 ALIGNMENT 0 Y12-16e18.p1k chr02 594 62 266452 266451 C 533 0.00 1371 reject_low 8 ALIGNMENT 0 Y12-16e18.p1k chr09 586 62 175109 175108 C 525 0.00 1371 reject_low 3 ALIGNMENT 0 Y12-16e18.p1k chr09 893 673 175025 175024 C 221 0.00 1371 reject_low 3 ALIGNMENT 76 Y12-16e18.p1k chr14 668 586 104805 104887 C 83 97.59 1371 reject_low 4 ALIGNMENT 0 Y12-16e18.p1k chr14 893 669 104806 104805 C 225 0.00 1371 reject_low 4 ALIGNMENT 0 Y12-16e18.p1k chr03 594 62 295554 295553 C 533 0.00 1371 reject_low 9 ALIGNMENT 74 Y12-16e18.p1k chr02 668 595 266378 266451 C 74 100.00 1371 reject_low 8 ALIGNMENT 75 Y12-16e18.p1k chr15 668 587 113801 113882 C 82 97.56 1371 reject_low 6 ALIGNMENT 0 Y12-16e18.p1k chr14 585 62 104888 104887 C 524 0.00 1371 reject_low 4 ALIGNMENT 0 Y12-16e18.p1k chr10 62 593 59098 59097 F 532 0.00 1371 reject_low 7 ALIGNMENT 0 Y12-16e18.p1k chr08 669 893 116174 116173 F 225 0.00 1371 reject_low 10 ALIGNMENT 75 Y12-16e18.p1k chr10 594 668 59098 59172 F 75 100.00 1371 reject_low 7 ALIGNMENT 74 Y12-16e18.p1k chr15 595 668 354039 354112 F 74 100.00 1371 reject_low 11 ALIGNMENT 0 Y12-16e18.p1k chr04 62 588 434254 434253 F 527 0.00 1371 reject_low 5 ALIGNMENT 75 Y12-16e18.p1k chr09 672 587 175024 175108 C 86 96.51 1371 reject_low 3 ALIGNMENT 0 Y12-16e18.p1k chr10 669 893 59172 59171 F 225 0.00 1371 reject_low 7 ALIGNMENT 0 Y12-16e18.p1k chr09 583 62 325829 325828 C 522 0.00 1371 reject_low 2 ALIGNMENT 79 Y12-16e18.p1k chr09 681 584 325732 325828 C 98 94.90 1371 reject_low 2 ALIGNMENT 871 Y12-16e18.p1k chr14 28 1117 560122 561231 F 1090 94.68 1371 accept 0 ALIGNMENT 0 Y12-16e18.p1k chr15 893 669 113802 113801 C 225 0.00 1371 reject_low 6 ALIGNMENT 0 Y12-16e18.p1k chr15 586 62 113883 113882 C 525 0.00 1371 reject_low 6 ALIGNMENT 0 Y12-16e18.p1k chr15 62 594 354039 354038 F 533 0.00 1371 reject_low 11 ALIGNMENT 940 Y12-16e18.q1k chr14 39 1061 601370 602396 F 1023 98.04 1315 reject_low 1 ALIGNMENT 0 Y12-16e18.p1k chr04 669 893 434333 434332 F 225 0.00 1371 reject_low 5 ALIGNMENT 910 Y12-16e18.q1k chr14 1114 39 569802 570883 C 1076 95.82 1315 accept 0 ALIGNMENT 0 Y12-16e18.p1k chr02 893 669 266379 266378 C 225 0.00 1371 reject_low 8 ALIGNMENT 0 Y12-16e18.p1k chr09 893 682 325733 325732 C 212 0.00 1371 reject_low 2 ALIGNMENT 33 Y12-16e19.q1k chr12 1018 1092 460419 460494 F 75 82.67 1253 reject_bad_break 0 ALIGNMENT 0 Y12-16e19.q1k chr12 1008 1017 460395 460418 F 10 0.00 1253 reject_bad_break 0 ALIGNMENT 971 Y12-16e19.p1k chr12 1184 14 455041 456206 C 1171 95.47 1432 reject_low 1 ALIGNMENT 0 Y12-16e19.q1k chr12 442 827 468930 468929 F 386 0.00 1253 reject_low 2 ALIGNMENT 0 Y12-16e19.q1k chr12 62 322 485696 485695 F 261 0.00 1253 reject_low 6 ALIGNMENT 977 Y12-16e19.p1k chr12 1222 14 464136 465343 C 1209 94.87 1432 reject_bad_break 0 ALIGNMENT 0 Y12-16e19.q1k chr12 457 827 489481 489480 F 371 0.00 1253 reject_low 3 ALIGNMENT 389 Y12-16e19.q1k chr12 36 441 468526 468930 F 406 99.51 1253 reject_low 2 ALIGNMENT 0 Y12-16e19.q1k chr12 62 322 489348 489347 F 261 0.00 1253 reject_low 3 ALIGNMENT 0 Y12-16e19.q1k chr12 62 322 482044 482043 F 261 0.00 1253 reject_low 5 ALIGNMENT 0 Y12-16e19.q1k chr12 442 827 482162 482161 F 386 0.00 1253 reject_low 5 ALIGNMENT 785 Y12-16e19.q1k chr12 36 1007 459389 460394 F 972 95.37 1253 reject_bad_break 0 ALIGNMENT 0 Y12-16e19.q1k chr12 442 827 472582 472581 F 386 0.00 1253 reject_low 4 ALIGNMENT 0 Y12-16e19.q1k chr12 62 322 472464 472463 F 261 0.00 1253 reject_low 4 ALIGNMENT 119 Y12-16e19.q1k chr12 323 441 472464 472582 F 119 100.00 1253 reject_low 4 ALIGNMENT 119 Y12-16e19.q1k chr12 323 441 485696 485814 F 119 100.00 1253 reject_low 6 ALIGNMENT 128 Y12-16e19.q1k chr12 323 456 489348 489481 F 134 98.51 1253 reject_low 3 ALIGNMENT 0 Y12-16e19.q1k chr12 442 827 485814 485813 F 386 0.00 1253 reject_low 6 ALIGNMENT 119 Y12-16e19.q1k chr12 323 441 482044 482162 F 119 100.00 1253 reject_low 5 ALIGNMENT 117 Y12-16e20.q1k chr01 34 243 2591 2798 F 210 86.67 1316 reject_low 9 ALIGNMENT 882 Y12-16e20.q1k chr11 34 1090 2606 3659 F 1057 95.55 1316 accept 0 ALIGNMENT 0 Y12-16e20.q1k chr01 244 902 2798 2797 F 659 0.00 1316 reject_low 9 ALIGNMENT 178 Y12-16e20.q1k chr10 34 281 9563 9807 F 248 91.94 1316 reject_low 4 ALIGNMENT 0 Y12-16e20.q1k chr03 902 282 307126 307125 C 621 0.00 1316 reject_low 5 ALIGNMENT 0 Y12-16e20.q1k chr09 282 902 9824 9823 F 621 0.00 1316 reject_low 3 ALIGNMENT 0 Y12-16e20.q1k chr15 282 902 12579 12578 F 621 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-16e20.q1k chr10 282 902 9807 9806 F 621 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-16e20.q1k chr14 902 270 781258 781257 C 633 0.00 1316 reject_low 2 ALIGNMENT 1000 Y12-16e20.p1k chr11 1140 19 6330 7461 C 1122 97.15 1411 accept 0 ALIGNMENT 168 Y12-16e20.q1k chr15 34 281 12332 12579 F 248 89.92 1316 reject_low 6 ALIGNMENT 178 Y12-16e20.q1k chr09 34 281 9580 9824 F 248 91.94 1316 reject_low 3 ALIGNMENT 0 Y12-16e20.q1k chr09 902 282 433255 433254 C 621 0.00 1316 reject_low 7 ALIGNMENT 0 Y12-16e20.q1k chr12 902 282 1062253 1062252 C 621 0.00 1316 reject_low 8 ALIGNMENT 223 Y12-16e20.q1k chr14 269 34 781257 781492 C 236 98.73 1316 reject_low 2 ALIGNMENT 155 Y12-16e20.q1k chr12 281 40 1062252 1062487 C 242 90.08 1316 reject_low 8 ALIGNMENT 173 Y12-16e20.q1k chr03 281 34 307125 307369 C 248 91.13 1316 reject_low 5 ALIGNMENT 0 Y12-16e20.q1k chr07 301 902 7343 7342 F 602 0.00 1316 reject_low 1 ALIGNMENT 165 Y12-16e20.q1k chr09 281 34 433254 433501 C 248 90.32 1316 reject_low 7 ALIGNMENT 181 Y12-16e20.q1k chr07 34 300 7076 7343 F 267 91.01 1316 reject_low 1 ALIGNMENT 177 Y12-16e21.q1k chr09 37 221 6764 6948 F 185 99.46 292 reject_low 19 ALIGNMENT 164 Y12-16e21.p1k chr07 43 275 1084352 1084592 F 233 91.42 276 reject_low 24 ALIGNMENT 0 Y12-16e21.q1k chr15 292 270 1084617 1084616 C 23 0.00 292 reject_low 28 ALIGNMENT 166 Y12-16e21.p1k chr02 275 38 5605 5850 C 238 91.18 276 reject_low 22 ALIGNMENT 0 Y12-16e21.q1k chr05 292 270 570326 570325 C 23 0.00 292 reject_low 4 ALIGNMENT 178 Y12-16e21.p1k chr14 275 22 6376 6636 C 254 91.73 276 reject_low 6 ALIGNMENT 168 Y12-16e21.p1k chr12 34 275 1071644 1071892 F 242 91.32 276 reject_low 21 ALIGNMENT 0 Y12-16e21.q1k chr16 270 292 6525 6524 F 23 0.00 292 reject_low 29 ALIGNMENT 177 Y12-16e21.q1k chr10 37 221 6747 6931 F 185 99.46 292 reject_low 20 ALIGNMENT 0 Y12-16e21.p1k chr10 90 62 6932 6931 C 29 0.00 276 reject_low 17 ALIGNMENT 161 Y12-16e21.q1k chr15 269 37 1084616 1084856 C 233 90.99 292 reject_low 28 ALIGNMENT 0 Y12-16e21.p1k chr09 90 62 6949 6948 C 29 0.00 276 reject_low 16 ALIGNMENT 0 Y12-16e21.q1k chr10 222 292 6931 6930 F 71 0.00 292 reject_low 20 ALIGNMENT 225 Y12-16e21.p1k chr05 43 275 570325 570557 F 233 99.57 276 reject_low 3 ALIGNMENT 172 Y12-16e21.q1k chr08 292 37 556966 557227 C 256 91.02 292 reject_low 11 ALIGNMENT 0 Y12-16e21.q1k chr09 222 292 6948 6947 F 71 0.00 292 reject_low 19 ALIGNMENT 161 Y12-16e21.q1k chr16 37 269 6285 6525 F 233 90.99 292 reject_low 29 ALIGNMENT 0 Y12-16e21.q1k chr07 292 270 1084353 1084352 C 23 0.00 292 reject_low 27 ALIGNMENT 175 Y12-16e21.q1k chr12 37 292 5420 5684 F 256 91.02 292 ambiguous_tel 1 ALIGNMENT 171 Y12-16e21.q1k chr13 37 292 5296 5561 F 256 90.62 292 reject_low 12 ALIGNMENT 170 Y12-16e21.q1k chr04 290 37 1525429 1525691 C 254 90.55 292 reject_low 15 ALIGNMENT 175 Y12-16e21.p1k chr08 20 275 556966 557227 F 256 91.41 276 reject_low 8 ALIGNMENT 175 Y12-16e21.q1k chr12 37 292 10955 11219 F 256 91.02 292 reject_low 7 ALIGNMENT 176 Y12-16e21.q1k chr14 37 290 6376 6636 F 254 91.34 292 reject_low 10 ALIGNMENT 236 Y12-16e21.p1k chr12 20 275 1065129 1065386 F 256 98.44 276 ambiguous_tel 0 ALIGNMENT 165 Y12-16e21.q1k chr12 278 37 1071644 1071892 C 242 90.91 292 ambiguous_tel 0 ALIGNMENT 180 Y12-16e21.p1k chr09 275 91 6764 6948 C 185 100.00 276 reject_low 16 ALIGNMENT 178 Y12-16e21.p1k chr12 275 20 5420 5684 C 256 91.41 276 reject_low 5 ALIGNMENT 222 Y12-16e21.q1k chr05 269 37 570325 570557 C 233 99.14 292 reject_low 4 ALIGNMENT 173 Y12-16e21.p1k chr04 22 275 1525429 1525691 F 254 90.94 276 reject_low 13 ALIGNMENT 163 Y12-16e21.q1k chr02 37 274 5605 5850 F 238 90.76 292 reject_low 23 ALIGNMENT 164 Y12-16e21.p1k chr15 43 275 1084616 1084856 F 233 91.42 276 reject_low 25 ALIGNMENT 178 Y12-16e21.p1k chr12 275 20 10955 11219 C 256 91.41 276 ambiguous_tel 1 ALIGNMENT 172 Y12-16e21.p1k chr06 275 24 4443 4703 C 252 90.87 276 reject_low 14 ALIGNMENT 174 Y12-16e21.p1k chr13 275 20 5296 5561 C 256 91.02 276 reject_low 9 ALIGNMENT 233 Y12-16e21.q1k chr12 292 37 1065129 1065386 C 256 98.05 292 reject_low 2 ALIGNMENT 169 Y12-16e21.q1k chr06 37 288 4443 4703 F 252 90.48 292 reject_low 18 ALIGNMENT 161 Y12-16e21.q1k chr07 269 37 1084352 1084592 C 233 90.99 292 reject_low 27 ALIGNMENT 164 Y12-16e21.p1k chr16 275 43 6285 6525 C 233 91.42 276 reject_low 26 ALIGNMENT 0 Y12-16e21.q1k chr02 275 292 5850 5849 F 18 0.00 292 reject_low 23 ALIGNMENT 180 Y12-16e21.p1k chr10 275 91 6747 6931 C 185 100.00 276 reject_low 17 ALIGNMENT 1005 Y12-16e22.p1k chr03 16 1171 50013 51186 F 1156 96.63 1340 accept 0 ALIGNMENT 0 Y12-16e22.p1k chr13 355 845 388718 388717 F 491 0.00 1340 reject_low 2 ALIGNMENT 20 Y12-16e22.p1k chr14 323 353 694243 694273 F 31 100.00 1340 reject_low 3 ALIGNMENT 20 Y12-16e22.p1k chr13 326 359 21960 21993 F 34 94.12 1340 reject_low 1 ALIGNMENT 0 Y12-16e22.p1k chr13 62 320 388685 388684 F 259 0.00 1340 reject_low 2 ALIGNMENT 21 Y12-16e22.p1k chr13 321 354 388685 388718 F 34 100.00 1340 reject_low 2 ALIGNMENT 0 Y12-16e22.p1k chr14 62 322 694243 694242 F 261 0.00 1340 reject_low 3 ALIGNMENT 0 Y12-16e22.p1k chr14 354 845 694273 694272 F 492 0.00 1340 reject_low 3 ALIGNMENT 1000 Y12-16e22.q1k chr03 1177 30 54057 55209 C 1148 96.69 1255 accept 0 ALIGNMENT 0 Y12-16e22.p1k chr13 360 845 21993 21992 F 486 0.00 1340 reject_low 1 ALIGNMENT 0 Y12-16e22.p1k chr13 62 325 21960 21959 F 264 0.00 1340 reject_low 1 ALIGNMENT 1036 Y12-16e23.p1k chr09 19 1308 371134 372437 F 1290 94.73 1337 accept 0 ALIGNMENT 980 Y12-16e23.q1k chr09 1180 38 374082 375216 C 1143 96.41 1214 accept 0 ALIGNMENT 969 Y12-16e24.p1k chr13 20 1244 688804 690030 F 1225 94.45 1327 accept 0 ALIGNMENT 482 Y12-16f01.p1k chr10 896 30 478248 479114 C 867 86.16 1427 ambiguous_trans_ua 15 ALIGNMENT 803 Y12-16f01.p1k chr13 16 896 361754 362636 F 881 97.96 1427 ambiguous_trans 2 ALIGNMENT 458 Y12-16f01.p1k chr12 16 851 219837 220673 F 836 85.77 1427 ambiguous_trans_ua 20 ALIGNMENT 467 Y12-16f01.p1k chr07 16 896 566599 567481 F 881 85.24 1427 ambiguous_trans 16 ALIGNMENT 462 Y12-16f01.p1k chr13 851 30 184497 185317 C 822 86.13 1427 ambiguous_trans 23 ALIGNMENT 479 Y12-16f01.p1k chr15 854 30 118032 118855 C 825 86.79 1427 ambiguous_trans 17 ALIGNMENT 461 Y12-16f01.p1k chr04 16 851 883050 883886 F 836 85.89 1427 ambiguous_trans 18 ALIGNMENT 456 Y12-16f01.p1k chr02 851 30 259903 260723 C 822 85.89 1427 ambiguous_trans 26 ALIGNMENT 488 Y12-16f01.p1k chr01 16 896 164995 165877 F 881 86.15 1427 ambiguous_trans 8 ALIGNMENT 458 Y12-16f01.p1k chr05 16 851 497247 498083 F 836 85.77 1427 ambiguous_trans 19 ALIGNMENT 485 Y12-16f01.p1k chr10 896 30 472664 473530 C 867 86.16 1427 ambiguous_trans 12 ALIGNMENT 491 Y12-16f01.p1k chr04 16 896 991471 992353 F 881 86.15 1427 ambiguous_trans 5 ALIGNMENT 491 Y12-16f01.p1k chr12 16 896 480730 481612 F 881 86.15 1427 ambiguous_trans 7 ALIGNMENT 491 Y12-16f01.p1k chr05 16 896 448148 449030 F 881 86.15 1427 ambiguous_trans 6 ALIGNMENT 776 Y12-16f01.p1k chr04 896 16 803180 804062 C 881 96.94 1427 ambiguous_trans_ua 3 ALIGNMENT 459 Y12-16f01.p1k chr15 851 30 595148 595968 C 822 86.01 1427 ambiguous_trans 24 ALIGNMENT 459 Y12-16f01.p1k chr16 851 30 844741 845561 C 822 86.01 1427 ambiguous_trans 25 ALIGNMENT 566 Y12-16f01.p1k chr14 16 896 101360 102242 F 881 89.10 1427 ambiguous_trans 4 ALIGNMENT 555 Y12-16f01.q1k chr07 689 38 715016 715667 C 652 96.93 1304 accept 0 ALIGNMENT 806 Y12-16f01.p1k chr02 896 16 221323 222205 C 881 98.07 1427 ambiguous_trans 1 ALIGNMENT 458 Y12-16f01.p1k chr13 16 851 377452 378288 F 836 85.77 1427 ambiguous_trans 21 ALIGNMENT 485 Y12-16f01.p1k chr13 896 30 196618 197484 C 867 86.16 1427 ambiguous_trans 13 ALIGNMENT 482 Y12-16f01.p1k chr07 896 30 536051 536917 C 867 86.16 1427 ambiguous_trans 14 ALIGNMENT 462 Y12-16f01.p1k chr04 851 30 1096095 1096915 C 822 86.13 1427 ambiguous_trans 22 ALIGNMENT 485 Y12-16f01.p1k chr16 16 896 855381 856263 F 881 86.04 1427 ambiguous_trans 11 ALIGNMENT 488 Y12-16f01.p1k chr16 16 896 809393 810275 F 881 86.15 1427 ambiguous_trans 9 ALIGNMENT 491 Y12-16f01.p1k chr04 896 30 1206977 1207843 C 867 86.39 1427 ambiguous_trans 10 ALIGNMENT 1003 Y12-16f02.q1k chr15 37 1218 90255 91445 F 1182 95.52 1367 accept 0 ALIGNMENT 109 Y12-16f02.p1k chr14 1069 907 62208 62374 C 163 89.57 1397 reject_low 1 ALIGNMENT 925 Y12-16f02.p1k chr15 1173 25 92162 93324 C 1149 94.78 1397 accept 0 ALIGNMENT 0 Y12-16f02.p1k chr14 906 62 62375 62374 C 845 0.00 1397 reject_low 1 ALIGNMENT 1006 Y12-16f03.p1k chr13 1210 18 107583 108792 C 1193 95.64 1433 accept 0 ALIGNMENT 1003 Y12-16f03.q1k chr13 28 1172 105027 106180 F 1145 96.24 1331 accept 0 ALIGNMENT 360 Y12-16f04.p1k chr15 399 18 162057 162438 C 382 99.48 399 accept 0 ALIGNMENT 826 Y12-16f04.q1k chr15 31 915 157882 158764 F 885 98.64 1379 accept 0 ALIGNMENT 984 Y12-16f05.p1k chr12 1145 35 456075 457199 C 1111 96.58 1385 accept 0 ALIGNMENT 976 Y12-16f05.q1k chr12 39 1159 451582 452709 F 1121 96.34 1353 accept 0 ALIGNMENT 976 Y12-16f05.q1k chr12 39 1159 460719 461846 F 1121 96.34 1353 accept 1 ALIGNMENT 984 Y12-16f05.p1k chr12 1145 35 465212 466336 C 1111 96.58 1385 accept 1 ALIGNMENT 0 Y12-16f05.q1k chr12 62 242 489754 489753 F 181 0.00 1353 reject_low 2 ALIGNMENT 728 Y12-16f05.q1k chr12 243 1008 489754 490519 F 766 98.56 1353 reject_low 2 ALIGNMENT 968 Y12-16f07.p1k chr10 19 1135 306493 307616 F 1117 96.42 1445 accept 0 ALIGNMENT 942 Y12-16f07.q1k chr10 1129 32 311048 312156 C 1098 96.54 1350 accept 0 ALIGNMENT 999 Y12-16f08.p1k chr09 1163 20 81381 82538 C 1144 96.77 1427 accept 0 ALIGNMENT 971 Y12-16f08.q1k chr09 39 1181 78552 79702 F 1143 96.33 1369 accept 0 ALIGNMENT 278 Y12-16f09.q1k chr10 326 35 197464 197755 C 292 99.66 1384 reject_low 5 ALIGNMENT 269 Y12-16f09.q1k chr16 35 326 436966 437257 F 292 98.63 1384 reject_low 11 ALIGNMENT 80 Y12-16f09.q1k chr10 503 585 422852 422934 F 83 98.80 1384 reject_low 1 ALIGNMENT 248 Y12-16f09.q1k chr07 35 326 931252 931543 F 292 96.23 1384 reject_low 19 ALIGNMENT 263 Y12-16f09.q1k chr15 330 36 703769 704063 C 295 97.63 1384 reject_low 13 ALIGNMENT 0 Y12-16f09.q1k chr07 327 869 931543 931542 F 543 0.00 1384 reject_low 19 ALIGNMENT 266 Y12-16f09.q1k chr13 35 326 808614 808905 F 292 98.29 1384 reject_low 14 ALIGNMENT 0 Y12-16f09.q1k chr16 327 869 443109 443108 F 543 0.00 1384 reject_low 12 ALIGNMENT 0 Y12-16f09.q1k chr13 327 869 808905 808904 F 543 0.00 1384 reject_low 14 ALIGNMENT 0 Y12-16f09.q1k chr13 326 62 573131 573130 C 265 0.00 1384 accept 0 ALIGNMENT 0 Y12-16f09.q1k chr02 327 869 36218 36217 F 543 0.00 1384 reject_low 3 ALIGNMENT 0 Y12-16f09.q1k chr02 331 869 643857 643856 F 539 0.00 1384 reject_low 8 ALIGNMENT 278 Y12-16f09.q1k chr13 326 35 503770 504061 C 292 99.66 1384 reject_low 7 ALIGNMENT 0 Y12-16f09.q1k chr13 869 327 503771 503770 C 543 0.00 1384 reject_low 7 ALIGNMENT 0 Y12-16f09.q1k chr10 586 869 422934 422933 F 284 0.00 1384 reject_low 1 ALIGNMENT 0 Y12-16f09.q1k chr09 327 869 197020 197019 F 543 0.00 1384 reject_low 4 ALIGNMENT 269 Y12-16f09.q1k chr08 326 35 91387 91678 C 292 98.63 1384 reject_low 10 ALIGNMENT 0 Y12-16f09.q1k chr08 869 327 91388 91387 C 543 0.00 1384 reject_low 10 ALIGNMENT 0 Y12-16f09.q1k chr05 349 869 354748 354747 F 521 0.00 1384 reject_low 2 ALIGNMENT 0 Y12-16f09.q1k chr14 869 327 96452 96451 C 543 0.00 1384 reject_low 20 ALIGNMENT 866 Y12-16f09.p1k chr13 1 991 569199 570205 F 991 97.07 1359 accept 0 ALIGNMENT 269 Y12-16f09.q1k chr05 35 348 354435 354748 F 314 96.50 1384 reject_low 2 ALIGNMENT 0 Y12-16f09.q1k chr10 869 327 197465 197464 C 543 0.00 1384 reject_low 5 ALIGNMENT 0 Y12-16f09.q1k chr08 869 327 85536 85535 C 543 0.00 1384 reject_low 9 ALIGNMENT 254 Y12-16f09.q1k chr04 326 35 437146 437437 C 292 96.92 1384 reject_low 18 ALIGNMENT 0 Y12-16f09.q1k chr14 869 327 561609 561608 C 543 0.00 1384 reject_low 15 ALIGNMENT 0 Y12-16f09.q1k chr16 327 869 437257 437256 F 543 0.00 1384 reject_low 11 ALIGNMENT 0 Y12-16f09.q1k chr15 869 331 703770 703769 C 539 0.00 1384 reject_low 13 ALIGNMENT 278 Y12-16f09.q1k chr10 326 35 203319 203610 C 292 99.66 1384 reject_low 6 ALIGNMENT 278 Y12-16f09.q1k chr02 35 326 35927 36218 F 292 99.66 1384 reject_low 3 ALIGNMENT 266 Y12-16f09.q1k chr14 326 35 561608 561899 C 292 98.29 1384 reject_low 15 ALIGNMENT 0 Y12-16f09.q1k chr04 869 327 437147 437146 C 543 0.00 1384 reject_low 18 ALIGNMENT 0 Y12-16f09.q1k chr14 167 62 96610 96609 C 106 0.00 1384 reject_low 20 ALIGNMENT 269 Y12-16f09.q1k chr16 35 326 442818 443109 F 292 98.63 1384 reject_low 12 ALIGNMENT 278 Y12-16f09.q1k chr09 35 326 196729 197020 F 292 99.66 1384 reject_low 4 ALIGNMENT 0 Y12-16f09.q1k chr10 62 502 422852 422851 F 441 0.00 1384 reject_low 1 ALIGNMENT 0 Y12-16f09.q1k chr14 327 869 632491 632490 F 543 0.00 1384 reject_low 16 ALIGNMENT 145 Y12-16f09.q1k chr14 326 168 96451 96609 C 159 98.11 1384 reject_low 20 ALIGNMENT 269 Y12-16f09.q1k chr02 35 330 643562 643857 F 296 98.31 1384 reject_low 8 ALIGNMENT 0 Y12-16f09.q1k chr07 869 327 110860 110859 C 543 0.00 1384 reject_low 17 ALIGNMENT 263 Y12-16f09.q1k chr07 326 35 110859 111150 C 292 97.95 1384 reject_low 17 ALIGNMENT 0 Y12-16f09.q1k chr10 869 327 203320 203319 C 543 0.00 1384 reject_low 6 ALIGNMENT 272 Y12-16f09.q1k chr08 326 35 85535 85826 C 292 98.97 1384 reject_low 9 ALIGNMENT 266 Y12-16f09.q1k chr14 35 326 632200 632491 F 292 98.29 1384 reject_low 16 ALIGNMENT 614 Y12-16f09.q1k chr13 1099 327 572356 573130 C 773 94.95 1384 accept 0 ALIGNMENT 55 Y12-16f10.q1k chr13 37 121 609101 609182 F 85 90.59 1322 reject_low 2 ALIGNMENT 20 Y12-16f10.q1k chr13 49 96 609551 609598 F 48 81.25 1322|0,5 reject_low 3 ALIGNMENT 0 Y12-16f10.q1k chr13 92 91 609594 609623 F 0 0.00 1322 reject_low 3 ALIGNMENT 0 Y12-16f10.q1k chr13 54 53 609475 609792 F 0 0.00 1322 reject_bad_break 0 ALIGNMENT 0 Y12-16f10.q1k chr13 154 820 609547 609546 F 667 0.00 1322 reject_low 1 ALIGNMENT 23 Y12-16f10.q1k chr13 86 114 609618 609646 F 29 93.10 1322|6,0 reject_low 3 ALIGNMENT 915 Y12-16f10.p1k chr13 1103 15 614318 615419 C 1089 96.69 1440 reject_bad_break 0 ALIGNMENT 57 Y12-16f10.q1k chr13 62 153 609456 609547 F 92 88.04 1322 reject_low 1 ALIGNMENT 24 Y12-16f10.q1k chr13 37 61 609458 609482 F 25 100.00 1322|0,8 reject_bad_break 0 ALIGNMENT 0 Y12-16f10.q1k chr13 115 820 609646 609645 F 706 0.00 1322 reject_low 3 ALIGNMENT 863 Y12-16f10.q1k chr13 46 1064 609785 610821 F 1019 96.07 1322|8,0 reject_bad_break 0 ALIGNMENT 0 Y12-16f10.q1k chr13 122 820 609182 609181 F 699 0.00 1322 reject_low 2 ALIGNMENT 461 Y12-16f11.q1k chr04 628 67 1278863 1279414 C 562 95.02 1473 reject_bad_break 0 ALIGNMENT 689 Y12-16f11.p1k chr04 2 806 1274836 1275634 F 805 96.65 1313 reject_bad_break 0 ALIGNMENT 23 Y12-16f11.q1k chr04 57 35 1279418 1279440 C 23 100.00 1473 reject_bad_break 0 ALIGNMENT 0 Y12-16f11.q1k chr04 66 58 1279415 1279417 C 9 0.00 1473 reject_bad_break 0 ALIGNMENT 855 Y12-16f12.q1k chr12 37 982 82336 83285 F 946 97.36 1361 accept 0 ALIGNMENT 827 Y12-16f12.p1k chr12 1032 12 85190 86202 C 1021 95.10 1475 accept 0 ALIGNMENT 761 Y12-16f13.q1k chr16 37 996 116561 117493 F 960 95.21 1406 accept 0 ALIGNMENT 0 Y12-16f13.q1k chr04 660 62 923099 923098 C 599 0.00 1406 reject_low 3 ALIGNMENT 22 Y12-16f13.q1k chr04 661 701 747513 747553 F 41 92.68 1406 reject_low 5 ALIGNMENT 0 Y12-16f13.q1k chr13 790 720 588622 588621 C 71 0.00 1406 reject_low 4 ALIGNMENT 0 Y12-16f13.q1k chr04 790 717 923044 923043 C 74 0.00 1406 reject_low 3 ALIGNMENT 0 Y12-16f13.q1k chr04 62 660 747513 747512 F 599 0.00 1406 reject_low 5 ALIGNMENT 0 Y12-16f13.q1k chr02 717 790 780447 780446 F 74 0.00 1406 reject_low 1 ALIGNMENT 0 Y12-16f13.q1k chr08 660 62 169213 169212 C 599 0.00 1406 reject_low 2 ALIGNMENT 0 Y12-16f13.q1k chr04 702 790 747553 747552 F 89 0.00 1406 reject_low 5 ALIGNMENT 0 Y12-16f13.q1k chr08 790 702 169173 169172 C 89 0.00 1406 reject_low 2 ALIGNMENT 0 Y12-16f13.q1k chr13 668 62 588672 588671 C 607 0.00 1406 reject_low 4 ALIGNMENT 783 Y12-16f13.p1k chr16 913 19 121031 121924 C 895 97.09 1420 accept 0 ALIGNMENT 0 Y12-16f13.q1k chr02 62 660 780392 780391 F 599 0.00 1406 reject_low 1 ALIGNMENT 27 Y12-16f13.q1k chr02 661 716 780392 780447 F 56 89.29 1406 reject_low 1 ALIGNMENT 22 Y12-16f13.q1k chr13 719 669 588621 588671 C 51 88.24 1406 reject_low 4 ALIGNMENT 24 Y12-16f13.q1k chr04 716 661 923043 923098 C 56 87.50 1406 reject_low 3 ALIGNMENT 28 Y12-16f13.q1k chr08 701 661 169172 169212 C 41 97.56 1406 reject_low 2 ALIGNMENT 956 Y12-16f14.p1k chr11 25 1119 561105 562219 F 1095 97.17 1389 accept 0 ALIGNMENT 739 Y12-16f14.q1k chr11 830 32 564827 565626 C 799 98.12 1379 accept 0 ALIGNMENT 21 Y12-16f14.p1k chr15 349 327 227288 227310 C 23 100.00 1389 reject_low 1 ALIGNMENT 0 Y12-16f14.p1k chr15 866 350 227289 227288 C 517 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-16f14.p1k chr15 326 62 227311 227310 C 265 0.00 1389 reject_low 1 ALIGNMENT 876 Y12-16f15.p1k chr01 1052 13 167005 168030 C 1040 96.44 1461 accept_trans 0 ALIGNMENT 989 Y12-16f15.q1k chr01 30 1194 157796 158966 F 1165 96.05 1323 accept_trans 0 ALIGNMENT 772 Y12-16f16.q1k chr12 1067 140 457187 458120 C 928 95.26 1443 accept 0 ALIGNMENT 772 Y12-16f16.q1k chr12 1067 140 466324 467257 C 928 95.26 1443 accept 1 ALIGNMENT 1075 Y12-16f16.p1k chr12 29 1217 453297 454492 F 1189 96.72 1488 accept 0 ALIGNMENT 1075 Y12-16f16.p1k chr12 29 1217 462434 463629 F 1189 96.72 1488 accept 1 ALIGNMENT 0 Y12-16f17.q1k chr01 829 625 192287 192286 C 205 0.00 1242 reject_low 3 ALIGNMENT 738 Y12-16f17.q1k chr16 1057 37 520589 521654 C 1021 93.05 1242 accept 0 ALIGNMENT 0 Y12-16f17.q1k chr04 659 829 778824 778823 F 171 0.00 1242 reject_low 2 ALIGNMENT 21 Y12-16f17.q1k chr13 613 659 587628 587674 F 47 93.62 1242 reject_low 4 ALIGNMENT 21 Y12-16f17.q1k chr01 624 599 192286 192311 C 26 100.00 1242 reject_low 3 ALIGNMENT 1020 Y12-16f17.p1k chr16 17 1179 515990 517164 F 1163 97.33 1396 accept 0 ALIGNMENT 20 Y12-16f17.q1k chr10 659 622 470058 470095 C 38 100.00 1242 reject_low 5 ALIGNMENT 0 Y12-16f17.q1k chr13 660 829 87053 87052 F 170 0.00 1242 reject_low 1 ALIGNMENT 0 Y12-16f17.q1k chr13 62 545 86940 86939 F 484 0.00 1242 reject_low 1 ALIGNMENT 0 Y12-16f17.q1k chr10 829 660 470059 470058 C 170 0.00 1242 reject_low 5 ALIGNMENT 32 Y12-16f17.q1k chr13 546 659 86940 87053 F 114 85.09 1242 reject_low 1 ALIGNMENT 0 Y12-16f17.q1k chr10 621 62 470096 470095 C 560 0.00 1242 reject_low 5 ALIGNMENT 0 Y12-16f17.q1k chr01 598 62 192312 192311 C 537 0.00 1242 reject_low 3 ALIGNMENT 28 Y12-16f17.q1k chr04 572 658 778738 778824 F 87 88.51 1242 reject_low 2 ALIGNMENT 0 Y12-16f17.q1k chr13 660 829 587674 587673 F 170 0.00 1242 reject_low 4 ALIGNMENT 0 Y12-16f17.q1k chr04 62 571 778738 778737 F 510 0.00 1242 reject_low 2 ALIGNMENT 0 Y12-16f17.q1k chr13 62 612 587628 587627 F 551 0.00 1242 reject_low 4 ALIGNMENT 1017 Y12-16f18.p1k chr16 1217 29 340115 341319 C 1189 95.63 1407 accept 0 ALIGNMENT 1008 Y12-16f19.p1k chr16 20 1183 870300 871472 F 1164 96.05 1394 accept 0 ALIGNMENT 1003 Y12-16f19.q1k chr16 1206 34 874151 875340 C 1173 96.25 1279 accept 0 ALIGNMENT 987 Y12-16f20.p1k chr11 11 1138 637995 639131 F 1128 97.52 1340 accept 0 ALIGNMENT 782 Y12-16f20.q1k chr11 908 33 641469 642344 C 876 97.37 1291 accept 0 ALIGNMENT 871 Y12-16f21.q1k chr04 28 1093 1430763 1431823 F 1066 95.40 1279 accept 0 ALIGNMENT 839 Y12-16f21.p1k chr04 915 20 1436180 1437074 C 896 98.77 1439 accept 0 ALIGNMENT 1023 Y12-16f22.q1k chr14 38 1268 728258 729494 F 1231 95.45 1285 accept 0 ALIGNMENT 1035 Y12-16f22.p1k chr14 1302 19 730589 731881 C 1284 95.56 1365 accept 0 ALIGNMENT 934 Y12-16f24.q1k chr12 1088 37 456558 457605 C 1052 96.96 1247 accept 0 ALIGNMENT 0 Y12-16f24.p1k chr12 83 818 490543 490542 F 736 0.00 1318 reject_low 2 ALIGNMENT 49 Y12-16f24.p1k chr12 29 82 490489 490543 F 54 98.15 1318 reject_low 2 ALIGNMENT 1054 Y12-16f24.p1k chr12 29 1213 452521 453708 F 1185 96.88 1318 accept 0 ALIGNMENT 1054 Y12-16f24.p1k chr12 29 1213 461658 462845 F 1185 96.88 1318 accept 1 ALIGNMENT 934 Y12-16f24.q1k chr12 1088 37 465695 466742 C 1052 96.96 1247 accept 1 ALIGNMENT 1019 Y12-16g01.p1k chr02 23 1136 624879 625992 F 1114 98.03 1393 accept 0 ALIGNMENT 975 Y12-16g01.q1k chr02 1135 32 628348 629467 C 1104 97.10 1252 accept 0 ALIGNMENT 870 Y12-16g02.p1k chr16 1200 18 12107 13312 C 1183 92.48 1398 ambiguous_tel 1 ALIGNMENT 854 Y12-16g02.p1k chr15 18 1231 1077823 1079068 F 1214 91.52 1398 ambiguous_tel 0 ALIGNMENT 296 Y12-16g02.q1k chr03 602 34 307349 307919 C 569 85.24 1298 reject_low 7 ALIGNMENT 261 Y12-16g02.q1k chr12 602 35 1062473 1063028 C 568 83.80 1298 reject_low 11 ALIGNMENT 0 Y12-16g02.q1k chr12 907 167 94737 94736 C 741 0.00 1298 reject_low 15 ALIGNMENT 0 Y12-16g02.q1k chr01 602 683 2611 2682 F 82 0.00 1298 reject_low 18 ALIGNMENT 0 Y12-16g02.q1k chr01 718 907 2716 2715 F 190 0.00 1298 reject_low 18 ALIGNMENT 245 Y12-16g02.q1k chr01 35 601 2057 2610 F 567 82.89 1298 reject_low 18 ALIGNMENT 74 Y12-16g02.q1k chr05 206 35 63681 63840 C 172 84.88 1298 reject_low 17 ALIGNMENT 0 Y12-16g02.q1k chr10 603 907 9583 9582 F 305 0.00 1298 reject_low 9 ALIGNMENT 0 Y12-16g02.q1k chr12 722 907 14016 14015 F 186 0.00 1298 reject_low 3 ALIGNMENT 84 Y12-16g02.q1k chr12 166 35 94736 94867 C 132 87.88 1298 reject_low 15 ALIGNMENT 0 Y12-16g02.q1k chr15 537 574 12295 12323 F 38 0.00 1298 reject_low 20 ALIGNMENT 0 Y12-16g02.q1k chr07 907 201 1080269 1080268 C 707 0.00 1298 reject_low 14 ALIGNMENT 0 Y12-16g02.q1k chr09 907 611 433474 433473 C 297 0.00 1298 reject_low 4 ALIGNMENT 23 Y12-16g02.q1k chr01 684 717 2683 2716 F 34 91.18 1298 reject_low 18 ALIGNMENT 0 Y12-16g02.q1k chr14 907 611 781465 781464 C 297 0.00 1298 reject_low 10 ALIGNMENT 244 Y12-16g02.q1k chr12 35 721 13333 14016 F 687 80.49 1298 reject_low 3 ALIGNMENT 20 Y12-16g02.q1k chr15 575 625 12324 12375 F 51 80.39 1298 reject_low 20 ALIGNMENT 715 Y12-16g02.p1k chr13 244 1200 917887 918857 F 957 92.69 1398 reject_low 2 ALIGNMENT 920 Y12-16g02.q1k chr16 34 1143 8185 9314 F 1110 95.50 1298 ambiguous_tel 1 ALIGNMENT 920 Y12-16g02.q1k chr15 1143 34 1081827 1082956 C 1110 95.50 1298 ambiguous_tel 0 ALIGNMENT 0 Y12-16g02.p1k chr13 62 243 917887 917886 F 182 0.00 1398 reject_low 2 ALIGNMENT 0 Y12-16g02.q1k chr02 907 201 809008 809007 C 707 0.00 1298 reject_low 13 ALIGNMENT 0 Y12-16g02.q1k chr05 907 207 63682 63681 C 701 0.00 1298 reject_low 17 ALIGNMENT 90 Y12-16g02.q1k chr07 200 35 1080268 1080424 C 166 87.35 1298 reject_low 14 ALIGNMENT 0 Y12-16g02.q1k chr12 907 603 1062474 1062473 C 305 0.00 1298 reject_low 11 ALIGNMENT 295 Y12-16g02.q1k chr10 35 602 9026 9583 F 568 85.56 1298 reject_low 9 ALIGNMENT 0 Y12-16g02.q1k chr11 611 907 2634 2633 F 297 0.00 1298 reject_low 5 ALIGNMENT 295 Y12-16g02.q1k chr09 35 602 9043 9600 F 568 85.56 1298 reject_low 8 ALIGNMENT 332 Y12-16g02.q1k chr09 610 34 433473 434047 C 577 86.83 1298 reject_low 4 ALIGNMENT 0 Y12-16g02.q1k chr07 598 907 7090 7089 F 310 0.00 1298 reject_low 12 ALIGNMENT 90 Y12-16g02.q1k chr02 200 35 809007 809163 C 166 87.35 1298 reject_low 13 ALIGNMENT 939 Y12-16g02.q1k chr13 1158 34 921617 922761 C 1125 95.82 1298 reject_low 2 ALIGNMENT 0 Y12-16g02.q1k chr04 907 269 1523121 1523120 C 639 0.00 1298 reject_low 16 ALIGNMENT 0 Y12-16g02.q1k chr02 714 907 8529 8528 F 194 0.00 1298 reject_low 19 ALIGNMENT 0 Y12-16g02.q1k chr02 601 682 8415 8498 F 82 0.00 1298 reject_low 19 ALIGNMENT 258 Y12-16g02.q1k chr07 35 597 6540 7090 F 563 83.66 1298 reject_low 12 ALIGNMENT 225 Y12-16g02.q1k chr15 35 536 11798 12294 F 502 83.47 1298 reject_low 20 ALIGNMENT 0 Y12-16g02.q1k chr09 603 907 9600 9599 F 305 0.00 1298 reject_low 8 ALIGNMENT 262 Y12-16g02.q1k chr14 610 35 781464 782030 C 576 83.68 1298 reject_low 10 ALIGNMENT 0 Y12-16g02.q1k chr03 907 603 307350 307349 C 305 0.00 1298 reject_low 7 ALIGNMENT 23 Y12-16g02.q1k chr02 683 713 8499 8529 F 31 93.55 1298 reject_low 19 ALIGNMENT 78 Y12-16g02.q1k chr04 268 35 1523120 1523344 C 234 80.77 1298 reject_low 16 ALIGNMENT 0 Y12-16g02.q1k chr08 561 907 12696 12695 F 347 0.00 1298 reject_low 6 ALIGNMENT 306 Y12-16g02.q1k chr08 35 560 12171 12696 F 526 87.64 1298 reject_low 6 ALIGNMENT 329 Y12-16g02.q1k chr11 34 610 2060 2634 F 577 86.66 1298 reject_low 5 ALIGNMENT 227 Y12-16g02.q1k chr02 35 600 7855 8414 F 566 81.80 1298 reject_low 19 ALIGNMENT 0 Y12-16g02.q1k chr15 626 907 12375 12374 F 282 0.00 1298 reject_low 20 ALIGNMENT 962 Y12-16g06.q1k chr10 1144 36 134310 135434 C 1109 96.21 1326 accept 0 ALIGNMENT 923 Y12-16g06.p1k chr10 15 1207 130575 131788 F 1193 94.05 1417 accept 0 ALIGNMENT 753 Y12-16g07.q1k chr04 24 900 655555 656431 F 877 96.47 1281 accept 0 ALIGNMENT 957 Y12-16g07.p1k chr04 1155 19 659717 660868 C 1137 96.31 1423 accept 0 ALIGNMENT 182 Y12-16g08.q1k chr08 727 1127 11795 12202 F 401 85.04 1326 reject_low 16 ALIGNMENT 956 Y12-16g08.p1k chr09 1086 17 12870 13950 C 1070 97.66 1404 ambiguous_tel 0 ALIGNMENT 0 Y12-16g08.q1k chr02 741 62 809535 809534 C 680 0.00 1326 reject_low 20 ALIGNMENT 0 Y12-16g08.q1k chr05 856 62 64095 64094 C 795 0.00 1326 reject_low 21 ALIGNMENT 188 Y12-16g08.q1k chr16 466 1127 7531 8217 F 662 78.70 1326 reject_low 15 ALIGNMENT 735 Y12-16g08.q1k chr14 1127 42 781999 783097 C 1086 91.07 1326 reject_low 5 ALIGNMENT 0 Y12-16g08.q1k chr15 62 363 11052 11051 F 302 0.00 1326 reject_low 11 ALIGNMENT 779 Y12-16g08.q1k chr10 39 1127 7945 9057 F 1089 91.92 1326 ambiguous_tel 1 ALIGNMENT 116 Y12-16g08.q1k chr01 861 1049 176653 176844 F 189 87.83 1326 reject_low 22 ALIGNMENT 189 Y12-16g08.q1k chr15 1127 466 1082924 1083610 C 662 78.70 1326 reject_low 13 ALIGNMENT 735 Y12-16g08.q1k chr12 42 1127 12266 13364 F 1086 91.07 1326 reject_low 4 ALIGNMENT 102 Y12-16g08.q1k chr11 244 39 665307 665510 C 206 85.44 1326 reject_low 17 ALIGNMENT 0 Y12-16g08.q1k chr13 465 62 923415 923414 C 404 0.00 1326 reject_low 14 ALIGNMENT 0 Y12-16g08.q1k chr08 62 726 11795 11794 F 665 0.00 1326 reject_low 16 ALIGNMENT 111 Y12-16g08.p1k chr02 240 789 189282 189831 F 550 74.36 1404 reject_low 12 ALIGNMENT 718 Y12-16g08.q1k chr02 42 1127 6788 7886 F 1086 90.52 1326 reject_low 7 ALIGNMENT 173 Y12-16g08.q1k chr07 1127 742 1080393 1080790 C 386 84.20 1326 reject_low 19 ALIGNMENT 207 Y12-16g08.p1k chr03 304 780 300810 301287 F 477 82.39 1404 reject_low 10 ALIGNMENT 0 Y12-16g08.p1k chr03 781 800 301287 301286 F 20 0.00 1404 reject_low 10 ALIGNMENT 188 Y12-16g08.q1k chr13 1127 466 922729 923414 C 662 78.70 1326 reject_low 14 ALIGNMENT 0 Y12-16g08.p1k chr03 62 303 300810 300809 F 242 0.00 1404 reject_low 10 ALIGNMENT 873 Y12-16g08.q1k chr12 1127 41 1062997 1064097 C 1087 94.85 1326 reject_low 3 ALIGNMENT 0 Y12-16g08.p1k chr02 62 239 189282 189281 F 178 0.00 1404 reject_low 12 ALIGNMENT 181 Y12-16g08.q1k chr07 801 1106 6230 6546 F 306 87.91 1326 reject_low 18 ALIGNMENT 726 Y12-16g08.q1k chr01 42 1127 982 2088 F 1086 90.42 1326 reject_low 6 ALIGNMENT 0 Y12-16g08.q1k chr01 62 860 176653 176652 F 799 0.00 1326 reject_low 22 ALIGNMENT 564 Y12-16g08.p1k chr14 17 784 752541 753311 F 768 92.19 1404 reject_low 2 ALIGNMENT 580 Y12-16g08.q1k chr15 364 1127 11052 11829 F 764 93.59 1326 reject_low 11 ALIGNMENT 167 Y12-16g08.q1k chr02 1127 742 809132 809534 C 386 83.68 1326 reject_low 20 ALIGNMENT 0 Y12-16g08.q1k chr16 62 465 7531 7530 F 404 0.00 1326 reject_low 15 ALIGNMENT 683 Y12-16g08.q1k chr11 41 1127 985 2092 F 1087 89.24 1326 reject_low 8 ALIGNMENT 782 Y12-16g08.q1k chr09 39 1127 7962 9074 F 1089 92.01 1326 ambiguous_tel 0 ALIGNMENT 0 Y12-16g08.q1k chr15 465 62 1083611 1083610 C 404 0.00 1326 reject_low 13 ALIGNMENT 0 Y12-16g08.q1k chr11 895 245 665308 665307 C 651 0.00 1326 reject_low 17 ALIGNMENT 644 Y12-16g08.q1k chr04 1127 41 1523313 1524427 C 1087 88.13 1326 reject_low 9 ALIGNMENT 0 Y12-16g08.q1k chr07 62 800 6230 6229 F 739 0.00 1326 reject_low 18 ALIGNMENT 956 Y12-16g08.p1k chr10 1086 17 12853 13933 C 1070 97.66 1404 ambiguous_tel 1 ALIGNMENT 0 Y12-16g08.q1k chr07 741 62 1080791 1080790 C 680 0.00 1326 reject_low 19 ALIGNMENT 0 Y12-16g08.p1k chr14 785 800 753311 753310 F 16 0.00 1404 reject_low 2 ALIGNMENT 147 Y12-16g08.q1k chr05 1127 857 63809 64094 C 271 86.72 1326 reject_low 21 ALIGNMENT 436 Y12-16g09.p1k chr13 34 719 109939 110620 F 686 89.36 1531 accept 0 ALIGNMENT 713 Y12-16g09.q1k chr13 813 29 111514 112297 C 785 98.22 1388 accept 0 ALIGNMENT 960 Y12-16g10.q1k chr13 33 1188 870009 871171 F 1156 95.93 1365 accept 0 ALIGNMENT 648 Y12-16g10.p1k chr13 840 10 875565 876384 C 831 94.46 1367 accept 0 ALIGNMENT 716 Y12-16g11.p1k chr14 817 20 397153 397951 C 798 97.74 1469 accept 0 ALIGNMENT 798 Y12-16g11.q1k chr14 34 900 393741 394607 F 867 98.15 1311 accept 0 ALIGNMENT 767 Y12-16g12.p1k chr07 6 833 104965 105791 F 828 98.55 1352 accept 0 ALIGNMENT 858 Y12-16g12.q1k chr07 962 32 106317 107246 C 931 98.28 1367 accept 0 ALIGNMENT 956 Y12-16g13.q1k chr09 36 1183 281945 283102 F 1148 96.08 1270 accept 0 ALIGNMENT 831 Y12-16g13.p1k chr09 932 15 285877 286792 C 918 97.49 1434 accept 0 ALIGNMENT 913 Y12-16g14.q1k chr16 34 1013 479307 480286 F 980 98.47 1339 accept 0 ALIGNMENT 928 Y12-16g15.p1k chr14 1066 24 309054 310106 C 1043 97.41 1371 accept 0 ALIGNMENT 922 Y12-16g15.q1k chr14 36 1162 306204 307349 F 1127 94.85 1265 accept 0 ALIGNMENT 0 Y12-16g16.p1k chr10 849 834 400164 400163 C 16 0.00 1416 reject_low 2 ALIGNMENT 0 Y12-16g16.p1k chr10 849 780 400047 400046 C 70 0.00 1416 reject_low 1 ALIGNMENT 21 Y12-16g16.p1k chr11 725 698 220424 220451 C 28 96.43 1416 reject_low 5 ALIGNMENT 0 Y12-16g16.p1k chr10 744 62 400252 400251 C 683 0.00 1416 reject_low 2 ALIGNMENT 51 Y12-16g16.p1k chr10 779 685 400046 400140 C 95 87.37 1416 reject_low 1 ALIGNMENT 914 Y12-16g16.q1k chr10 37 1178 394935 396068 F 1142 95.10 1376 accept 0 ALIGNMENT 0 Y12-16g16.p1k chr10 684 62 400141 400140 C 623 0.00 1416 reject_low 1 ALIGNMENT 0 Y12-16g16.p1k chr11 849 726 220425 220424 C 124 0.00 1416 reject_low 5 ALIGNMENT 951 Y12-16g16.p1k chr10 1102 19 399762 400871 C 1084 97.05 1416 accept 0 ALIGNMENT 24 Y12-16g16.p1k chr10 725 637 400046 400134 C 89 78.65 1416 reject_low 3 ALIGNMENT 0 Y12-16g16.p1k chr10 849 726 400047 400046 C 124 0.00 1416 reject_low 3 ALIGNMENT 0 Y12-16g16.p1k chr10 636 62 400135 400134 C 575 0.00 1416 reject_low 3 ALIGNMENT 0 Y12-16g16.p1k chr11 697 62 220452 220451 C 636 0.00 1416 reject_low 5 ALIGNMENT 0 Y12-16g16.p1k chr11 805 62 220452 220451 C 744 0.00 1416 reject_low 4 ALIGNMENT 22 Y12-16g16.p1k chr11 837 806 220420 220451 C 32 96.88 1416 reject_low 4 ALIGNMENT 28 Y12-16g16.p1k chr10 833 745 400163 400251 C 89 80.90 1416 reject_low 2 ALIGNMENT 0 Y12-16g17.q1k chr10 173 62 396718 396717 C 112 0.00 1284 reject_low 9 ALIGNMENT 77 Y12-16g17.q1k chr06 177 262 162220 162304 F 86 97.67 1284 reject_low 4 ALIGNMENT 0 Y12-16g17.q1k chr15 177 62 226681 226680 C 116 0.00 1284 reject_low 13 ALIGNMENT 74 Y12-16g17.q1k chr07 170 249 845645 845724 F 80 97.50 1284 reject_low 6 ALIGNMENT 0 Y12-16g17.q1k chr02 175 62 197706 197705 C 114 0.00 1284 reject_low 12 ALIGNMENT 70 Y12-16g17.q1k chr16 179 249 572266 572336 F 71 100.00 1284 reject_low 15 ALIGNMENT 79 Y12-16g17.q1k chr10 167 259 531730 531821 F 93 95.70 1284 reject_low 1 ALIGNMENT 0 Y12-16g17.q1k chr10 836 250 396643 396642 C 587 0.00 1284 reject_low 9 ALIGNMENT 0 Y12-16g17.q1k chr07 836 250 930957 930956 C 587 0.00 1284 reject_low 8 ALIGNMENT 0 Y12-16g17.q1k chr04 62 177 83548 83547 F 116 0.00 1284 reject_low 5 ALIGNMENT 856 Y12-16g17.q1k chr05 1128 38 61019 62101 C 1091 94.87 1284 accept 0 ALIGNMENT 0 Y12-16g17.q1k chr04 263 836 83632 83631 F 574 0.00 1284 reject_low 5 ALIGNMENT 76 Y12-16g17.q1k chr10 249 174 396642 396717 C 76 100.00 1284 reject_low 9 ALIGNMENT 73 Y12-16g17.q1k chr03 254 178 142693 142769 C 77 98.70 1284 reject_low 10 ALIGNMENT 75 Y12-16g17.q1k chr06 250 176 180965 181039 C 75 100.00 1284 reject_low 11 ALIGNMENT 75 Y12-16g17.q1k chr04 178 262 83548 83632 F 85 96.47 1284 reject_low 5 ALIGNMENT 0 Y12-16g17.q1k chr06 263 836 162304 162303 F 574 0.00 1284 reject_low 4 ALIGNMENT 0 Y12-16g17.q1k chr13 178 62 183969 183968 C 117 0.00 1284 reject_low 7 ALIGNMENT 0 Y12-16g17.q1k chr15 250 836 282234 282233 F 587 0.00 1284 reject_low 14 ALIGNMENT 0 Y12-16g17.q1k chr07 250 836 845724 845723 F 587 0.00 1284 reject_low 6 ALIGNMENT 0 Y12-16g17.q1k chr04 62 165 992814 992813 F 104 0.00 1284 reject_low 3 ALIGNMENT 0 Y12-16g17.q1k chr06 836 251 180966 180965 C 586 0.00 1284 reject_low 11 ALIGNMENT 72 Y12-16g17.q1k chr13 260 179 183887 183968 C 82 96.34 1284 reject_low 7 ALIGNMENT 73 Y12-16g17.q1k chr04 166 249 992814 992896 F 84 96.43 1284 reject_low 3 ALIGNMENT 916 Y12-16g17.p1k chr05 21 1059 57574 58636 F 1039 97.21 1342 accept 0 ALIGNMENT 74 Y12-16g17.q1k chr02 249 176 197632 197705 C 74 100.00 1284 reject_low 12 ALIGNMENT 0 Y12-16g17.q1k chr16 62 178 572266 572265 F 117 0.00 1284 reject_low 15 ALIGNMENT 0 Y12-16g17.q1k chr02 836 250 197633 197632 C 587 0.00 1284 reject_low 12 ALIGNMENT 0 Y12-16g17.q1k chr16 250 836 572336 572335 F 587 0.00 1284 reject_low 15 ALIGNMENT 0 Y12-16g17.q1k chr07 62 169 845645 845644 F 108 0.00 1284 reject_low 6 ALIGNMENT 0 Y12-16g17.q1k chr13 836 261 183888 183887 C 576 0.00 1284 reject_low 7 ALIGNMENT 0 Y12-16g17.q1k chr07 173 62 931032 931031 C 112 0.00 1284 reject_low 8 ALIGNMENT 0 Y12-16g17.q1k chr16 262 836 860458 860457 F 575 0.00 1284 reject_low 2 ALIGNMENT 76 Y12-16g17.q1k chr07 249 174 930956 931031 C 76 100.00 1284 reject_low 8 ALIGNMENT 0 Y12-16g17.q1k chr06 175 62 181040 181039 C 114 0.00 1284 reject_low 11 ALIGNMENT 70 Y12-16g17.q1k chr15 179 249 282164 282234 F 71 100.00 1284 reject_low 14 ALIGNMENT 0 Y12-16g17.q1k chr15 62 178 282164 282163 F 117 0.00 1284 reject_low 14 ALIGNMENT 0 Y12-16g17.q1k chr03 836 255 142694 142693 C 582 0.00 1284 reject_low 10 ALIGNMENT 0 Y12-16g17.q1k chr16 62 169 860366 860365 F 108 0.00 1284 reject_low 2 ALIGNMENT 0 Y12-16g17.q1k chr04 250 836 992896 992895 F 587 0.00 1284 reject_low 3 ALIGNMENT 0 Y12-16g17.q1k chr06 62 176 162220 162219 F 115 0.00 1284 reject_low 4 ALIGNMENT 79 Y12-16g17.q1k chr16 170 261 860366 860458 F 92 95.65 1284 reject_low 2 ALIGNMENT 0 Y12-16g17.q1k chr03 177 62 142770 142769 C 116 0.00 1284 reject_low 10 ALIGNMENT 0 Y12-16g17.q1k chr10 260 836 531821 531820 F 577 0.00 1284 reject_low 1 ALIGNMENT 72 Y12-16g17.q1k chr15 249 178 226609 226680 C 72 100.00 1284 reject_low 13 ALIGNMENT 0 Y12-16g17.q1k chr15 836 250 226610 226609 C 587 0.00 1284 reject_low 13 ALIGNMENT 0 Y12-16g17.q1k chr10 62 166 531730 531729 F 105 0.00 1284 reject_low 1 ALIGNMENT 1004 Y12-16g18.p1k chr15 1224 18 983438 984642 C 1207 96.11 1411 accept 0 ALIGNMENT 727 Y12-16g18.q1k chr15 34 907 980822 981698 F 874 96.45 1329 accept 0 ALIGNMENT 0 Y12-16g19.p1k chr14 62 637 561608 561607 F 576 0.00 1395 reject_low 8 ALIGNMENT 0 Y12-16g19.p1k chr07 905 633 111367 111366 C 273 0.00 1395 reject_low 28 ALIGNMENT 0 Y12-16g19.p1k chr03 489 62 143078 143077 C 428 0.00 1395 reject_low 22 ALIGNMENT 0 Y12-16g19.p1k chr03 905 633 124319 124318 C 273 0.00 1395 reject_low 21 ALIGNMENT 0 Y12-16g19.p1k chr10 539 637 197464 197463 F 99 0.00 1395 ambiguous_trans 0 ALIGNMENT 0 Y12-16g19.p1k chr14 604 62 561546 561545 C 543 0.00 1395 reject_low 29 ALIGNMENT 34 Y12-16g19.p1k chr04 610 540 437575 437645 C 71 84.51 1395 reject_low 26 ALIGNMENT 0 Y12-16g19.p1k chr14 62 637 96451 96450 F 576 0.00 1395 reject_low 23 ALIGNMENT 0 Y12-16g19.p1k chr07 62 489 931691 931690 F 428 0.00 1395 reject_low 27 ALIGNMENT 0 Y12-16g19.p1k chr02 637 62 36219 36218 C 576 0.00 1395 reject_low 6 ALIGNMENT 0 Y12-16g19.p1k chr10 62 489 197414 197413 F 428 0.00 1395 ambiguous_trans 0 reject_low 24 ALIGNMENT 0 Y12-16g19.p1k chr12 905 638 734526 734525 C 268 0.00 1395 reject_low 3 ALIGNMENT 145 Y12-16g19.p1k chr14 638 796 96451 96609 F 159 98.11 1395 reject_low 23 ALIGNMENT 0 Y12-16g19.p1k chr07 532 905 931733 931732 F 374 0.00 1395 reject_low 27 ALIGNMENT 24 Y12-16g19.p1k chr07 632 588 111366 111410 C 45 86.67 1395 reject_low 28 ALIGNMENT 980 Y12-16g19.q1k chr16 37 1234 439727 440936 F 1198 95.99 1236 ambiguous_trans 2 ALIGNMENT 0 Y12-16g19.p1k chr04 539 62 437646 437645 C 478 0.00 1395 reject_low 26 ALIGNMENT 436 Y12-16g19.p1k chr08 638 1189 85535 86100 F 552 95.11 1395 ambiguous_trans 1 ALIGNMENT 27 Y12-16g19.p1k chr07 490 531 931691 931733 F 42 92.86 1395 reject_low 27 ALIGNMENT 0 Y12-16g19.p1k chr09 488 62 197487 197486 C 427 0.00 1395 reject_low 19 ALIGNMENT 328 Y12-16g19.p1k chr02 1006 638 643486 643853 C 369 97.83 1395 reject_low 11 ALIGNMENT 45 Y12-16g19.p1k chr08 632 490 91952 92095 C 143 80.42 1395 reject_low 25 ALIGNMENT 28 Y12-16g19.p1k chr10 490 538 197414 197463 F 49 89.80 1395 ambiguous_trans 0 reject_low 24 ALIGNMENT 0 Y12-16g19.p1k chr08 638 905 133820 133819 F 268 0.00 1395 reject_low 20 ALIGNMENT 0 Y12-16g19.p1k chr13 62 617 503749 503748 F 556 0.00 1395 reject_low 5 ALIGNMENT 94 Y12-16g19.p1k chr08 498 637 133680 133820 F 140 91.43 1395 reject_low 20 ALIGNMENT 0 Y12-16g19.p1k chr08 62 497 133680 133679 F 436 0.00 1395 reject_low 20 ALIGNMENT 0 Y12-16g19.p1k chr14 905 633 561519 561518 C 273 0.00 1395 reject_low 29 ALIGNMENT 463 Y12-16g19.p1k chr12 637 25 734525 735159 C 613 93.64 1395 reject_low 3 ALIGNMENT 0 Y12-16g19.p1k chr13 637 62 808906 808905 C 576 0.00 1395 reject_low 14 ALIGNMENT 346 Y12-16g19.p1k chr09 1006 638 196653 197020 C 369 99.46 1395 reject_low 19 ALIGNMENT 0 Y12-16g19.p1k chr14 797 905 96609 96608 F 109 0.00 1395 reject_low 23 ALIGNMENT 0 Y12-16g19.p1k chr09 637 633 197021 197341 C 5 0.00 1395 reject_low 19 ALIGNMENT 0 Y12-16g19.p1k chr08 485 62 116752 116751 C 424 0.00 1395 reject_low 18 ALIGNMENT 98 Y12-16g19.p1k chr03 632 490 124318 124462 C 143 92.31 1395 reject_low 21 ALIGNMENT 0 Y12-16g19.p1k chr02 637 62 643854 643853 C 576 0.00 1395 reject_low 11 ALIGNMENT 325 Y12-16g19.p1k chr14 1006 638 632124 632491 C 369 97.56 1395 reject_low 12 ALIGNMENT 304 Y12-16g19.p1k chr04 638 999 437146 437506 F 362 96.13 1395 reject_low 15 ALIGNMENT 346 Y12-16g19.p1k chr10 638 1006 203319 203686 F 369 99.46 1395 reject_low 24 ALIGNMENT 0 Y12-16g19.p1k chr07 637 62 931544 931543 C 576 0.00 1395 reject_low 16 ALIGNMENT 331 Y12-16g19.p1k chr07 638 1006 110859 111226 F 369 98.10 1395 reject_low 10 ALIGNMENT 264 Y12-16g19.p1k chr15 638 928 703773 704063 F 291 97.94 1395 reject_low 17 ALIGNMENT 74 Y12-16g19.p1k chr09 632 489 197342 197486 C 144 86.11 1395 reject_low 19 ALIGNMENT 334 Y12-16g19.p1k chr16 1006 638 436890 437257 C 369 98.37 1395 reject_low 9 ALIGNMENT 20 Y12-16g19.p1k chr14 632 605 561518 561545 C 28 92.86 1395 reject_low 29 ALIGNMENT 0 Y12-16g19.p1k chr16 637 62 437258 437257 C 576 0.00 1395 reject_low 9 ALIGNMENT 0 Y12-16g19.p1k chr10 539 637 197464 203318 F 99 0.00 1395 reject_low 24 ALIGNMENT 0 Y12-16g19.p1k chr05 637 62 354727 354726 C 576 0.00 1395 reject_low 13 ALIGNMENT 334 Y12-16g19.p1k chr08 638 1006 91387 91754 F 369 98.37 1395 reject_low 7 ALIGNMENT 0 Y12-16g19.p1k chr15 62 637 703773 703772 F 576 0.00 1395 reject_low 17 ALIGNMENT 1010 Y12-16g19.q1k chr10 1234 37 199641 200850 C 1198 96.83 1236 ambiguous_trans 0 ALIGNMENT 0 Y12-16g19.p1k chr08 489 62 92096 92095 C 428 0.00 1395 reject_low 25 ALIGNMENT 445 Y12-16g19.p1k chr10 638 1189 197464 198029 F 552 95.65 1395 ambiguous_trans 0 ALIGNMENT 980 Y12-16g19.q1k chr08 1234 37 87709 88918 C 1198 95.99 1236 ambiguous_trans 1 ALIGNMENT 102 Y12-16g19.p1k chr08 632 486 116603 116751 C 147 92.52 1395 reject_low 18 ALIGNMENT 300 Y12-16g19.p1k chr07 1006 638 931177 931543 C 369 95.39 1395 reject_low 16 ALIGNMENT 334 Y12-16g19.p1k chr14 638 1006 561608 561975 F 369 98.37 1395 reject_low 8 ALIGNMENT 346 Y12-16g19.p1k chr02 1006 638 35851 36218 C 369 99.46 1395 reject_low 6 ALIGNMENT 0 Y12-16g19.p1k chr07 62 637 110859 110858 F 576 0.00 1395 reject_low 10 ALIGNMENT 322 Y12-16g19.p1k chr05 1006 638 354359 354726 C 369 97.29 1395 reject_low 13 ALIGNMENT 0 Y12-16g19.p1k chr07 587 62 111411 111410 C 526 0.00 1395 reject_low 28 ALIGNMENT 0 Y12-16g19.p1k chr09 276 62 210745 210744 C 215 0.00 1395 reject_low 4 ALIGNMENT 0 Y12-16g19.p1k chr04 62 637 437146 437145 F 576 0.00 1395 reject_low 15 ALIGNMENT 318 Y12-16g19.p1k chr13 1006 638 808539 808905 C 369 97.02 1395 reject_low 14 ALIGNMENT 349 Y12-16g19.p1k chr13 618 1006 503749 504137 F 389 98.20 1395 reject_low 5 ALIGNMENT 98 Y12-16g19.p1k chr03 632 490 142933 143077 C 143 92.31 1395 reject_low 22 ALIGNMENT 0 Y12-16g19.p1k chr09 905 361 210662 210661 C 545 0.00 1395 reject_low 4 ALIGNMENT 0 Y12-16g19.p1k chr16 637 62 443110 443109 C 576 0.00 1395 ambiguous_trans 2 ALIGNMENT 0 Y12-16g19.p1k chr03 905 633 142934 142933 C 273 0.00 1395 reject_low 22 ALIGNMENT 0 Y12-16g19.p1k chr08 905 633 116604 116603 C 273 0.00 1395 reject_low 18 ALIGNMENT 0 Y12-16g19.p1k chr03 489 62 124463 124462 C 428 0.00 1395 reject_low 21 ALIGNMENT 0 Y12-16g19.p1k chr04 905 611 437576 437575 C 295 0.00 1395 reject_low 26 ALIGNMENT 0 Y12-16g19.p1k chr08 62 637 91387 91386 F 576 0.00 1395 reject_low 7 ALIGNMENT 0 Y12-16g19.p1k chr08 905 633 91953 91952 C 273 0.00 1395 reject_low 25 ALIGNMENT 78 Y12-16g19.p1k chr09 360 277 210661 210744 C 84 97.62 1395 reject_low 4 ALIGNMENT 433 Y12-16g19.p1k chr16 1189 638 442544 443109 C 552 94.93 1395 ambiguous_trans 2 ALIGNMENT 0 Y12-16g19.p1k chr14 637 62 632492 632491 C 576 0.00 1395 reject_low 12 ALIGNMENT 0 Y12-16g19.p1k chr08 62 637 85535 85534 F 576 0.00 1395 ambiguous_trans 1 ALIGNMENT 983 Y12-16g20.p1k chr04 1254 20 1291706 1292950 C 1235 94.41 1415 accept 0 ALIGNMENT 713 Y12-16g20.q1k chr04 30 809 1287854 1288633 F 780 97.44 1341 accept 0 ALIGNMENT 993 Y12-16g21.p1k chr16 18 1201 296637 297836 F 1184 95.61 1358 accept 0 ALIGNMENT 867 Y12-16g21.q1k chr16 983 36 299686 300635 C 948 97.57 1368 accept 0 ALIGNMENT 930 Y12-16g22.p1k chr07 1067 23 128569 129624 C 1045 97.42 1313 accept 0 ALIGNMENT 971 Y12-16g22.q1k chr07 34 1130 125675 126782 F 1097 96.44 1364 accept 0 ALIGNMENT 996 Y12-16g23.p1k chr07 16 1213 264310 265520 F 1198 95.83 1320 accept 0 ALIGNMENT 273 Y12-16g23.q1k chr07 876 464 268270 268661 C 413 91.28 1469 accept 0 ALIGNMENT 883 Y12-16g24.p1k chr04 19 1055 1509799 1510846 F 1037 96.24 1290 accept 0 ALIGNMENT 974 Y12-16h01.p1k chr07 19 1257 496193 497430 F 1239 95.88 1444 accept 0 ALIGNMENT 1034 Y12-16h01.q1k chr07 1276 39 499199 500447 C 1238 95.40 1360 accept 0 ALIGNMENT 955 Y12-16h02.q1k chr12 1185 37 455768 456901 C 1149 95.47 1368 accept 0 ALIGNMENT 955 Y12-16h02.q1k chr12 1185 37 464905 466038 C 1149 95.47 1368 accept 1 ALIGNMENT 1003 Y12-16h02.p1k chr12 9 1168 452588 453745 F 1160 96.21 1473 accept 0 ALIGNMENT 1003 Y12-16h02.p1k chr12 9 1168 461725 462882 F 1160 96.21 1473 accept 1 ALIGNMENT 773 Y12-16h03.p1k chr07 10 1081 724290 725380 F 1072 92.63 1468 accept 0 ALIGNMENT 327 Y12-16h03.q1k chr07 497 28 727983 728449 C 470 91.28 1327 accept 0 ALIGNMENT 963 Y12-16h05.p1k chr15 23 1200 944330 945514 F 1178 95.67 1424 accept 0 ALIGNMENT 978 Y12-16h05.q1k chr15 1152 37 949625 950747 C 1116 97.04 1359 accept 0 ALIGNMENT 894 Y12-16h06.q1k chr09 31 1046 229286 230310 F 1016 97.64 1363 accept_chi 1 ALIGNMENT 906 Y12-16h06.p1k chr12 1069 18 499746 500797 C 1052 97.15 1439 accept_chi 0 ALIGNMENT 952 Y12-16h07.p1k chr05 1154 29 544178 545333 C 1126 95.83 1417 accept 0 ALIGNMENT 816 Y12-16h08.q1k chr16 31 953 641709 642632 F 923 97.29 1397 accept 0 ALIGNMENT 835 Y12-16h08.p1k chr16 923 12 646731 647646 C 912 97.92 1436 accept 0 ALIGNMENT 935 Y12-16h09.q1k chr04 33 1138 967364 968456 F 1106 96.75 1379 accept 0 ALIGNMENT 774 Y12-16h09.p1k chr04 871 3 972091 972965 C 869 97.12 1380 accept 0 ALIGNMENT 972 Y12-16h11.q1k chr04 31 1151 730396 731527 F 1121 96.97 1332 accept 0 ALIGNMENT 937 Y12-16h11.p1k chr04 1050 20 734419 735460 C 1031 98.25 1426 accept 0 ALIGNMENT 253 Y12-16h12.q1k chr15 33 347 81498 81807 F 315 95.56 1367 accept 0 ALIGNMENT 25 Y12-16h12.q1k chr10 207 165 639914 639956 C 43 95.35 1367 reject_low 1 ALIGNMENT 1037 Y12-16h12.p1k chr15 1253 20 84590 85825 C 1234 95.62 1456 accept 0 ALIGNMENT 0 Y12-16h12.q1k chr02 205 269 353660 353659 F 65 0.00 1367 reject_low 2 ALIGNMENT 21 Y12-16h12.q1k chr15 166 193 301294 301321 F 28 100.00 1367 reject_low 5 ALIGNMENT 0 Y12-16h12.q1k chr01 163 62 31520 31519 C 102 0.00 1367 reject_low 3 ALIGNMENT 0 Y12-16h12.q1k chr01 269 198 31487 31486 C 72 0.00 1367 reject_low 3 ALIGNMENT 0 Y12-16h12.q1k chr15 62 165 301294 301293 F 104 0.00 1367 reject_low 5 ALIGNMENT 0 Y12-16h12.q1k chr02 269 192 650244 650243 C 78 0.00 1367 reject_low 4 ALIGNMENT 0 Y12-16h12.q1k chr02 163 62 650271 650270 C 102 0.00 1367 reject_low 4 ALIGNMENT 0 Y12-16h12.q1k chr10 164 62 639957 639956 C 103 0.00 1367 reject_low 1 ALIGNMENT 21 Y12-16h12.q1k chr02 191 164 650243 650270 C 28 100.00 1367 reject_low 4 ALIGNMENT 27 Y12-16h12.q1k chr02 164 204 353620 353660 F 41 97.56 1367 reject_low 2 ALIGNMENT 0 Y12-16h12.q1k chr10 269 208 639915 639914 C 62 0.00 1367 reject_low 1 ALIGNMENT 25 Y12-16h12.q1k chr01 197 164 31486 31519 C 34 100.00 1367 reject_low 3 ALIGNMENT 0 Y12-16h12.q1k chr02 62 163 353620 353619 F 102 0.00 1367 reject_low 2 ALIGNMENT 0 Y12-16h12.q1k chr15 194 269 301321 301320 F 76 0.00 1367 reject_low 5 ALIGNMENT 842 Y12-16h13.q1k chr16 1075 37 645391 646430 C 1039 95.19 1279 accept 0 ALIGNMENT 931 Y12-16h13.p1k chr16 6 1065 641985 643057 F 1060 96.89 1416 accept 0 ALIGNMENT 101 Y12-16h14.p1k chr12 508 374 485696 485828 C 135 92.59 1571 reject_low 5 ALIGNMENT 0 Y12-16h14.p1k chr12 373 62 472597 472596 C 312 0.00 1571 reject_low 3 ALIGNMENT 156 Y12-16h14.p1k chr12 622 374 468703 468944 C 249 89.56 1571 reject_low 1 ALIGNMENT 676 Y12-16h14.q1k chr12 34 741 455351 456058 F 708 99.01 1319 accept 0 ALIGNMENT 426 Y12-16h14.p1k chr12 622 14 459566 460183 C 609 91.63 1571 accept 0 ALIGNMENT 101 Y12-16h14.p1k chr12 508 374 472464 472596 C 135 92.59 1571 reject_low 3 ALIGNMENT 0 Y12-16h14.p1k chr12 373 62 468945 468944 C 312 0.00 1571 reject_low 1 ALIGNMENT 0 Y12-16h14.p1k chr12 373 62 485829 485828 C 312 0.00 1571 reject_low 5 ALIGNMENT 101 Y12-16h14.p1k chr12 508 374 482044 482176 C 135 92.59 1571 reject_low 4 ALIGNMENT 676 Y12-16h14.q1k chr12 34 741 464488 465195 F 708 99.01 1319 reject_low 1 ALIGNMENT 104 Y12-16h14.p1k chr12 508 374 489348 489480 C 135 93.33 1571 reject_low 2 ALIGNMENT 0 Y12-16h14.p1k chr12 373 62 489481 489480 C 312 0.00 1571 reject_low 2 ALIGNMENT 0 Y12-16h14.p1k chr12 373 62 482177 482176 C 312 0.00 1571 reject_low 4 ALIGNMENT 893 Y12-16h15.p1k chr09 1036 16 195446 196481 C 1021 97.26 1432 accept 0 ALIGNMENT 1055 Y12-16h15.q1k chr09 38 1289 191914 193172 F 1252 96.01 1346 accept 0 ALIGNMENT 971 Y12-16h17.q1k chr10 34 1182 69602 70736 F 1149 96.00 1362 accept 0 ALIGNMENT 753 Y12-16h17.p1k chr10 952 17 72846 73780 C 936 94.98 1372 accept 0 ALIGNMENT 51 Y12-16h18.p1k chr10 49 320 472428 472704 F 272 77.21 1406 reject_low 17 ALIGNMENT 0 Y12-16h18.p1k chr14 322 888 525054 525053 F 567 0.00 1406 reject_low 6 ALIGNMENT 54 Y12-16h18.p1k chr13 309 49 357025 357284 C 261 77.39 1406 reject_low 15 ALIGNMENT 988 Y12-16h18.p1k chr10 22 1139 543385 544509 F 1118 97.32 1406 accept 0 ALIGNMENT 0 Y12-16h18.p1k chr07 888 310 817420 817419 C 579 0.00 1406 reject_low 13 ALIGNMENT 0 Y12-16h18.p1k chr10 888 327 537659 537658 C 562 0.00 1406 reject_low 1 ALIGNMENT 53 Y12-16h18.p1k chr04 309 41 645518 645787 C 269 76.21 1406 reject_low 11 ALIGNMENT 70 Y12-16h18.p1k chr03 32 313 149514 149790 F 282 79.08 1406 reject_low 3 ALIGNMENT 0 Y12-16h18.p1k chr04 322 888 1151351 1151350 F 567 0.00 1406 reject_low 30 ALIGNMENT 45 Y12-16h18.p1k chr03 49 320 151568 151838 F 272 76.10 1406 reject_low 27 ALIGNMENT 0 Y12-16h18.p1k chr02 147 99 258849 258876 C 49 0.00 1406 reject_low 35 ALIGNMENT 0 Y12-16h18.p1k chr04 322 888 803221 803220 F 567 0.00 1406 reject_low 31 ALIGNMENT 0 Y12-16h18.p1k chr03 888 322 124141 124140 C 567 0.00 1406 reject_low 29 ALIGNMENT 0 Y12-16h18.p1k chr13 888 310 362608 362607 C 579 0.00 1406 reject_low 16 ALIGNMENT 54 Y12-16h18.p1k chr03 321 41 168604 168885 C 281 76.16 1406 reject_low 4 ALIGNMENT 38 Y12-16h18.p1k chr04 49 321 802951 803221 F 273 75.46 1406 reject_low 31 ALIGNMENT 0 Y12-16h18.p1k chr13 888 310 357026 357025 C 579 0.00 1406 reject_low 15 ALIGNMENT 0 Y12-16h18.p1k chr12 888 310 215103 215102 C 579 0.00 1406 reject_low 21 ALIGNMENT 0 Y12-16h18.p1k chr13 888 310 378306 378305 C 579 0.00 1406 reject_low 23 ALIGNMENT 48 Y12-16h18.p1k chr05 309 49 498100 498365 C 261 77.01 1406 reject_low 20 ALIGNMENT 34 Y12-16h18.p1k chr16 154 53 850354 850453 C 102 82.35 1406 reject_low 32 ALIGNMENT 0 Y12-16h18.p1k chr04 888 321 434431 434430 C 568 0.00 1406 reject_low 2 ALIGNMENT 53 Y12-16h18.p1k chr16 321 42 804650 804930 C 280 76.43 1406 reject_low 9 ALIGNMENT 54 Y12-16h18.p1k chr01 321 42 160248 160531 C 280 77.50 1406 reject_low 7 ALIGNMENT 0 Y12-16h18.p1k chr16 888 155 850355 850354 C 734 0.00 1406 reject_low 32 ALIGNMENT 0 Y12-16h18.p1k chr05 888 310 498101 498100 C 579 0.00 1406 reject_low 20 ALIGNMENT 54 Y12-16h18.p1k chr11 309 49 517116 517375 C 261 77.39 1406 reject_low 14 ALIGNMENT 0 Y12-16h18.p1k chr15 310 888 118018 118017 F 579 0.00 1406 reject_low 24 ALIGNMENT 25 Y12-16h18.p1k chr02 98 37 258877 258935 C 62 83.87 1406 reject_low 35 ALIGNMENT 0 Y12-16h18.p1k chr10 321 888 472704 472703 F 568 0.00 1406 reject_low 17 ALIGNMENT 40 Y12-16h18.p1k chr03 321 49 124140 124411 C 273 75.46 1406 reject_low 29 ALIGNMENT 0 Y12-16h18.p1k chr03 255 62 151518 151517 C 194 0.00 1406 reject_low 34 ALIGNMENT 0 Y12-16h18.p1k chr01 888 322 165837 165836 C 567 0.00 1406 reject_low 8 ALIGNMENT 51 Y12-16h18.p1k chr10 49 320 483600 483876 F 272 77.21 1406 reject_low 18 ALIGNMENT 48 Y12-16h18.p1k chr13 309 49 372717 372982 C 261 77.01 1406 reject_low 22 ALIGNMENT 0 Y12-16h18.p1k chr07 310 888 535525 535524 F 579 0.00 1406 reject_low 12 ALIGNMENT 49 Y12-16h18.p1k chr16 321 49 850634 850911 C 273 76.92 1406 reject_low 19 ALIGNMENT 0 Y12-16h18.p1k chr16 310 888 804634 804633 F 579 0.00 1406 reject_low 28 ALIGNMENT 0 Y12-16h18.p1k chr04 888 310 645519 645518 C 579 0.00 1406 reject_low 11 ALIGNMENT 54 Y12-16h18.p1k chr07 49 309 535266 535525 F 261 77.39 1406 reject_low 12 ALIGNMENT 669 Y12-16h18.q1k chr10 788 35 546892 547645 C 754 96.95 1298 accept 0 ALIGNMENT 0 Y12-16h18.p1k chr16 310 888 850315 850314 F 579 0.00 1406 reject_low 26 ALIGNMENT 0 Y12-16h18.p1k chr02 888 310 258687 258686 C 579 0.00 1406 reject_low 35 ALIGNMENT 0 Y12-16h18.p1k chr16 62 238 804564 804563 F 177 0.00 1406 reject_low 28 ALIGNMENT 0 Y12-16h18.p1k chr03 321 888 151838 151837 F 568 0.00 1406 reject_low 27 ALIGNMENT 54 Y12-16h18.p1k chr14 41 321 524773 525054 F 281 76.16 1406 reject_low 6 ALIGNMENT 0 Y12-16h18.p1k chr14 322 888 519488 519487 F 567 0.00 1406 reject_low 5 ALIGNMENT 0 Y12-16h18.p1k chr10 321 888 483876 483875 F 568 0.00 1406 reject_low 18 ALIGNMENT 0 Y12-16h18.p1k chr03 888 322 168605 168604 C 567 0.00 1406 reject_low 4 ALIGNMENT 40 Y12-16h18.p1k chr04 49 321 1151082 1151351 F 273 75.46 1406 reject_low 30 ALIGNMENT 32 Y12-16h18.p1k chr03 274 49 142803 143026 C 226 75.22 1406 reject_low 33 ALIGNMENT 54 Y12-16h18.p1k chr01 321 42 165836 166119 C 280 77.50 1406 reject_low 8 ALIGNMENT 0 Y12-16h18.p1k chr13 888 310 372718 372717 C 579 0.00 1406 reject_low 22 ALIGNMENT 48 Y12-16h18.p1k chr16 49 309 844459 844724 F 261 77.01 1406 reject_low 25 ALIGNMENT 48 Y12-16h18.p1k chr12 309 49 215102 215367 C 261 77.01 1406 reject_low 21 ALIGNMENT 48 Y12-16h18.p1k chr13 309 49 378305 378570 C 261 77.01 1406 reject_low 23 ALIGNMENT 54 Y12-16h18.p1k chr13 309 49 362607 362866 C 261 77.39 1406 reject_low 16 ALIGNMENT 50 Y12-16h18.p1k chr02 309 148 258686 258848 C 162 79.63 1406 reject_low 35 ALIGNMENT 0 Y12-16h18.p1k chr01 888 322 160249 160248 C 567 0.00 1406 reject_low 7 ALIGNMENT 107 Y12-16h18.p1k chr04 320 42 434430 434707 C 279 82.80 1406 reject_low 2 ALIGNMENT 0 Y12-16h18.p1k chr03 888 308 151467 151466 C 581 0.00 1406 reject_low 34 ALIGNMENT 0 Y12-16h18.p1k chr16 888 322 804651 804650 C 567 0.00 1406 reject_low 9 ALIGNMENT 44 Y12-16h18.p1k chr16 239 309 804564 804634 F 71 90.14 1406 reject_low 28 ALIGNMENT 0 Y12-16h18.p1k chr16 888 322 850635 850634 C 567 0.00 1406 reject_low 19 ALIGNMENT 0 Y12-16h18.p1k chr16 888 322 810235 810234 C 567 0.00 1406 reject_low 10 ALIGNMENT 0 Y12-16h18.p1k chr03 314 888 149790 149789 F 575 0.00 1406 reject_low 3 ALIGNMENT 24 Y12-16h18.p1k chr03 307 256 151466 151517 C 52 86.54 1406 reject_low 34 ALIGNMENT 0 Y12-16h18.p1k chr16 310 888 844724 844723 F 579 0.00 1406 reject_low 25 ALIGNMENT 0 Y12-16h18.p1k chr11 888 310 517117 517116 C 579 0.00 1406 reject_low 14 ALIGNMENT 177 Y12-16h18.p1k chr10 326 32 537658 537947 C 295 90.51 1406 reject_low 1 ALIGNMENT 53 Y12-16h18.p1k chr16 321 42 810234 810514 C 280 76.43 1406 reject_low 10 ALIGNMENT 48 Y12-16h18.p1k chr16 49 309 850050 850315 F 261 77.01 1406 reject_low 26 ALIGNMENT 0 Y12-16h18.p1k chr03 888 275 142804 142803 C 614 0.00 1406 reject_low 33 ALIGNMENT 54 Y12-16h18.p1k chr14 41 321 519207 519488 F 281 76.16 1406 reject_low 5 ALIGNMENT 48 Y12-16h18.p1k chr15 49 309 117753 118018 F 261 77.01 1406 reject_low 24 ALIGNMENT 54 Y12-16h18.p1k chr07 309 49 817419 817678 C 261 77.01 1406 reject_low 13 ALIGNMENT 931 Y12-16h19.p1k chr08 1068 17 175950 177015 C 1052 96.58 1383 accept 0 ALIGNMENT 1010 Y12-16h19.q1k chr08 36 1212 172321 173507 F 1177 95.75 1296 accept 0 ALIGNMENT 827 Y12-16h20.q1k chr04 34 967 839409 840339 F 934 97.54 1339 accept 0 ALIGNMENT 0 Y12-16h21.p1k chr04 886 706 221708 221707 C 181 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-16h21.p1k chr04 608 62 221804 221803 C 547 0.00 1389 reject_low 1 ALIGNMENT 861 Y12-16h21.q1k chr04 49 1025 126517 127507 F 977 97.24 1333 accept 0 ALIGNMENT 1008 Y12-16h21.p1k chr04 1244 20 129847 131075 C 1225 95.10 1389 accept 0 ALIGNMENT 73 Y12-16h21.p1k chr04 705 609 221707 221803 C 97 95.88 1389 reject_low 1 ALIGNMENT 992 Y12-16h22.q1k chr12 1223 37 200448 201644 C 1187 94.86 1421 accept 0 ALIGNMENT 1010 Y12-16h22.p1k chr12 23 1171 197083 198237 F 1149 96.17 1335 accept 0 ALIGNMENT 1007 Y12-16h23.p1k chr08 1221 19 373665 374880 C 1203 95.51 1316 accept 0 ALIGNMENT 925 Y12-16h23.q1k chr08 23 1100 370629 371692 F 1078 96.85 1276 accept 0 ALIGNMENT 872 Y12-16h24.p1k chr02 32 1144 606235 607362 F 1113 93.89 1315 accept 0 ALIGNMENT 368 Y12-16h24.p1k chr16 450 930 407054 407537 F 481 92.72 1315 reject_low 1 ALIGNMENT 0 Y12-16h24.p1k chr16 214 449 407054 407053 F 236 0.00 1315 reject_low 1 ALIGNMENT 888 Y12-16i01.q1k chr14 39 1023 46758 47737 F 985 97.56 1313 accept 0 ALIGNMENT 994 Y12-16i01.p1k chr14 1219 15 49720 50936 C 1205 95.77 1398 accept 0 ALIGNMENT 889 Y12-16i02.p1k chr09 19 987 112561 113530 F 969 97.94 1372 accept 0 ALIGNMENT 871 Y12-16i02.q1k chr09 1017 33 115662 116648 C 985 97.66 1344 accept 0 ALIGNMENT 1045 Y12-16i03.p1k chr13 22 1261 81540 82780 F 1240 95.32 1465 accept 0 ALIGNMENT 909 Y12-16i03.q1k chr13 1043 36 84812 85829 C 1008 98.51 1243 accept 0 ALIGNMENT 0 Y12-16i04.p1k chr15 871 870 117700 123630 F 0 0.00 1413 accept_trans 0 ALIGNMENT 167 Y12-16i04.p1k chr15 869 1161 123629 123934 F 293 87.71 1413|2,0 accept_trans 0 ALIGNMENT 1027 Y12-16i04.q1k chr15 1210 35 126277 127461 C 1176 96.85 1343 accept_trans 0 ALIGNMENT 801 Y12-16i04.p1k chr15 25 872 116854 117701 F 848 99.06 1413|0,2 accept_trans 0 ALIGNMENT 887 Y12-16i05.p1k chr04 20 1063 1447181 1448238 F 1044 96.07 1351 accept 0 ALIGNMENT 903 Y12-16i05.q1k chr04 1155 33 1451400 1452537 C 1123 94.66 1272 accept 0 ALIGNMENT 834 Y12-16i06.q1k chr15 1075 35 808270 809283 C 1041 95.97 1443 accept 0 ALIGNMENT 913 Y12-16i06.p1k chr15 20 1162 804153 805310 F 1143 95.01 1402 accept 0 ALIGNMENT 1001 Y12-16i07.q1k chr14 36 1197 584588 585764 F 1162 96.73 1274 accept 0 ALIGNMENT 1027 Y12-16i07.p1k chr14 1242 22 589653 590873 C 1221 95.41 1487 accept 0 ALIGNMENT 863 Y12-16i08.q1k chr15 961 35 1008198 1009127 C 927 98.27 1374 accept 0 ALIGNMENT 971 Y12-16i09.p1k chr14 1173 18 419609 420777 C 1156 95.67 1421 accept 0 ALIGNMENT 637 Y12-16i09.q1k chr14 36 988 414959 415913 F 953 90.56 1287 accept 0 ALIGNMENT 1033 Y12-16i10.p1k chr16 1235 20 82425 83657 C 1216 95.07 1470 accept 0 ALIGNMENT 522 Y12-16i10.q1k chr16 1 655 80057 80714 F 655 93.44 866 accept 0 ALIGNMENT 774 Y12-16i11.q1k chr02 36 880 37994 38838 F 845 98.22 1264 accept 0 ALIGNMENT 899 Y12-16i11.p1k chr02 1004 11 43007 44003 C 994 97.48 1453 accept 0 ALIGNMENT 989 Y12-16i12.p1k chr16 22 1213 454932 456143 F 1192 95.39 1449 accept 0 ALIGNMENT 845 Y12-16i12.q1k chr16 966 35 459718 460649 C 932 98.28 1283 accept 0 ALIGNMENT 946 Y12-16i13.p1k chr11 1216 34 441691 442884 C 1183 94.42 1403 accept 0 ALIGNMENT 838 Y12-16i13.q1k chr11 35 978 437012 437956 F 944 97.14 1275 accept 0 ALIGNMENT 989 Y12-16i14.p1k chr16 18 1150 91280 92430 F 1133 96.91 1386 accept 0 ALIGNMENT 861 Y12-16i14.q1k chr16 1078 29 95703 96749 C 1050 95.62 1413 accept 0 ALIGNMENT 163 Y12-16i14.q1k chr13 29 281 634218 634470 F 253 88.54 1413 reject_low 1 ALIGNMENT 0 Y12-16i14.q1k chr13 282 842 634470 634469 F 561 0.00 1413 reject_low 1 ALIGNMENT 856 Y12-16i15.q1k chr15 991 35 909545 910501 C 957 97.18 1275 accept 0 ALIGNMENT 0 Y12-16i15.q1k chr13 80 62 760925 760924 C 19 0.00 1275 reject_low 1 ALIGNMENT 32 Y12-16i15.q1k chr13 119 81 760886 760924 C 39 94.87 1275 reject_low 1 ALIGNMENT 30 Y12-16i15.q1k chr13 405 320 760600 760685 C 86 79.07 1275 reject_low 1 ALIGNMENT 38 Y12-16i15.q1k chr13 797 685 760208 760320 C 113 79.65 1275 reject_low 1 ALIGNMENT 959 Y12-16i15.p1k chr15 17 1110 905778 906890 F 1094 97.81 1359 accept 0 ALIGNMENT 0 Y12-16i15.q1k chr13 684 406 760321 760599 C 279 0.00 1275 reject_low 1 ALIGNMENT 0 Y12-16i15.q1k chr13 240 120 760765 760885 C 121 0.00 1275 reject_low 1 ALIGNMENT 20 Y12-16i15.q1k chr13 284 241 760721 760764 C 44 84.09 1275 reject_low 1 ALIGNMENT 0 Y12-16i15.q1k chr13 319 285 760686 760720 C 35 0.00 1275 reject_low 1 ALIGNMENT 0 Y12-16i16.q1k chr10 62 146 381726 381725 F 85 0.00 1249 reject_low 4 ALIGNMENT 0 Y12-16i16.q1k chr10 507 797 382079 382078 F 291 0.00 1249 reject_low 4 ALIGNMENT 0 Y12-16i16.q1k chr01 128 62 141113 141112 C 67 0.00 1249 reject_low 2 ALIGNMENT 0 Y12-16i16.q1k chr12 128 62 97164 97163 C 67 0.00 1249 reject_low 3 ALIGNMENT 63 Y12-16i16.q1k chr10 147 506 381726 382079 F 360 73.89 1249 reject_low 4 ALIGNMENT 0 Y12-16i16.q1k chr10 233 62 521013 521012 C 172 0.00 1249 reject_low 5 ALIGNMENT 176 Y12-16i16.q1k chr01 847 129 140401 141112 C 719 76.36 1249 reject_low 2 ALIGNMENT 0 Y12-16i16.q1k chr05 428 797 95323 95322 F 370 0.00 1249 reject_low 6 ALIGNMENT 160 Y12-16i16.q1k chr12 778 129 96520 97163 C 650 76.31 1249 reject_low 3 ALIGNMENT 0 Y12-16i16.q1k chr05 62 219 95125 95124 F 158 0.00 1249 reject_low 6 ALIGNMENT 52 Y12-16i16.q1k chr10 518 234 520737 521012 C 285 74.74 1249 reject_low 5 ALIGNMENT 0 Y12-16i16.q1k chr10 797 519 520738 520737 C 279 0.00 1249 reject_low 5 ALIGNMENT 20 Y12-16i16.q1k chr05 394 427 95290 95323 F 34 91.18 1249 reject_low 6 ALIGNMENT 843 Y12-16i16.q1k chr14 34 980 252298 253258 F 947 97.15 1249 accept 0 ALIGNMENT 0 Y12-16i16.q1k chr12 797 779 96521 96520 C 19 0.00 1249 reject_low 3 ALIGNMENT 36 Y12-16i16.q1k chr05 220 357 95125 95262 F 138 75.36 1249 reject_low 6 ALIGNMENT 822 Y12-16i16.q1k chr04 34 980 44304 45264 F 947 96.52 1249 reject_low 1 ALIGNMENT 930 Y12-16i16.p1k chr14 1125 17 257294 258408 C 1109 96.21 1387 accept 0 ALIGNMENT 0 Y12-16i16.q1k chr05 358 393 95263 95289 F 36 0.00 1249 reject_low 6 ALIGNMENT 917 Y12-16i17.q1k chr03 1059 38 35201 36233 C 1022 97.65 1212 accept 0 ALIGNMENT 953 Y12-16i17.p1k chr03 20 1127 31952 33072 F 1108 96.66 1387 accept 0 ALIGNMENT 942 Y12-16i18.p1k chr07 20 1117 633371 634485 F 1098 96.90 1343 accept 0 ALIGNMENT 779 Y12-16i18.q1k chr07 886 35 636542 637394 C 852 98.94 1329 accept 0 ALIGNMENT 985 Y12-16i19.p1k chr09 20 1220 181083 182288 F 1201 94.84 1411 accept 0 ALIGNMENT 922 Y12-16i19.q1k chr09 1119 37 185870 186971 C 1083 96.49 1202 accept 0 ALIGNMENT 61 Y12-16i20.q1k chr08 927 1007 116096 116175 F 81 92.59 1296 reject_low 8 ALIGNMENT 59 Y12-16i20.q1k chr14 925 1006 560686 560766 F 82 91.46 1296 reject_low 10 ALIGNMENT 931 Y12-16i20.p1k chr03 18 1149 292596 293744 F 1132 95.94 1340 accept 0 ALIGNMENT 60 Y12-16i20.q1k chr09 1007 925 325745 325826 C 83 91.57 1296 reject_low 7 ALIGNMENT 0 Y12-16i20.q1k chr14 62 924 560686 560685 F 863 0.00 1296 reject_low 10 ALIGNMENT 0 Y12-16i20.p1k chr03 62 449 199396 199395 F 388 0.00 1340 reject_low 1 ALIGNMENT 0 Y12-16i20.q1k chr04 62 922 434252 434251 F 861 0.00 1296 reject_low 4 ALIGNMENT 0 Y12-16i20.q1k chr14 931 62 104879 104878 C 870 0.00 1296 reject_low 12 ALIGNMENT 60 Y12-16i20.q1k chr15 927 1006 354034 354112 F 80 92.50 1296 reject_low 11 ALIGNMENT 569 Y12-16i20.p1k chr03 450 1138 199396 200097 F 689 95.36 1340 reject_low 1 ALIGNMENT 61 Y12-16i20.q1k chr04 923 1008 434252 434335 F 86 91.86 1296 reject_low 4 ALIGNMENT 0 Y12-16i20.q1k chr15 62 926 354034 354033 F 865 0.00 1296 reject_low 11 ALIGNMENT 0 Y12-16i20.p1k chr03 62 449 12239 12238 F 388 0.00 1340 reject_low 2 ALIGNMENT 0 Y12-16i20.q1k chr09 924 62 175109 175108 C 863 0.00 1296 reject_low 6 ALIGNMENT 0 Y12-16i20.q1k chr09 924 62 325827 325826 C 863 0.00 1296 reject_low 7 ALIGNMENT 59 Y12-16i20.q1k chr14 1007 932 104804 104878 C 76 93.42 1296 reject_low 12 ALIGNMENT 0 Y12-16i20.q1k chr10 62 931 59099 59098 F 870 0.00 1296 reject_low 9 ALIGNMENT 0 Y12-16i20.q1k chr08 62 926 116096 116095 F 865 0.00 1296 reject_low 8 ALIGNMENT 60 Y12-16i20.q1k chr09 1007 925 175027 175108 C 83 91.57 1296 reject_low 6 ALIGNMENT 0 Y12-16i20.q1k chr15 924 62 113882 113881 C 863 0.00 1296 reject_low 3 ALIGNMENT 61 Y12-16i20.q1k chr02 1006 926 266378 266457 C 81 92.59 1296 reject_low 5 ALIGNMENT 64 Y12-16i20.q1k chr15 1011 925 113796 113881 C 87 91.95 1296 reject_low 3 ALIGNMENT 952 Y12-16i20.q1k chr03 1129 37 295359 296446 C 1093 97.35 1296 accept 0 ALIGNMENT 562 Y12-16i20.p1k chr03 450 1138 12239 12942 F 689 95.07 1340 reject_low 2 ALIGNMENT 60 Y12-16i20.q1k chr10 932 1008 59099 59174 F 77 93.51 1296 reject_low 9 ALIGNMENT 0 Y12-16i20.q1k chr02 925 62 266458 266457 C 864 0.00 1296 reject_low 5 ALIGNMENT 413 Y12-16i21.q1k chr07 686 140 175704 176244 C 547 93.42 961 accept 0 ALIGNMENT 916 Y12-16i21.p1k chr07 20 1065 170990 172037 F 1046 97.23 1337 accept 0 ALIGNMENT 582 Y12-16i22.q1k chr13 963 86 796089 796951 C 878 90.43 1474 accept 0 ALIGNMENT 891 Y12-16i23.p1k chr04 1153 16 1120792 1121940 C 1138 93.94 1325 accept 0 ALIGNMENT 916 Y12-16i23.q1k chr04 30 1103 1117241 1118313 F 1074 96.28 1207 accept 0 ALIGNMENT 1015 Y12-16i24.p1k chr13 20 1208 792122 793304 F 1189 95.37 1343 accept 0 ALIGNMENT 1037 Y12-16i24.q1k chr13 1232 33 795790 796990 C 1200 95.92 1289 accept 0 ALIGNMENT 953 Y12-16j02.p1k chr04 18 1149 241067 242214 F 1132 95.67 1388 accept 0 ALIGNMENT 971 Y12-16j02.q1k chr04 1201 36 246114 247273 C 1166 95.63 1361 accept 0 ALIGNMENT 963 Y12-16j03.q1k chr09 1161 34 191435 192579 C 1128 96.90 1316 accept 0 ALIGNMENT 1070 Y12-16j03.p1k chr09 23 1246 188617 189843 F 1224 96.41 1462 accept 0 ALIGNMENT 978 Y12-16j04.p1k chr05 1220 20 553800 555005 C 1201 95.34 1414 accept 0 ALIGNMENT 960 Y12-16j04.q1k chr05 36 1163 548511 549656 F 1128 96.63 1325 accept 0 ALIGNMENT 735 Y12-16j05.q1k chr04 987 35 1298606 1299543 C 953 94.54 1470 accept 0 ALIGNMENT 930 Y12-16j05.p1k chr04 25 1177 1296925 1298079 F 1153 94.45 1425 accept 0 ALIGNMENT 991 Y12-16j06.p1k chr12 1169 17 631907 633054 C 1153 96.62 1488 accept 0 ALIGNMENT 405 Y12-16j06.q1k chr12 1 587 628508 629105 F 587 91.82 681 accept 0 ALIGNMENT 448 Y12-16j07.p1k chr04 616 21 842473 843065 C 596 92.79 1453 accept 0 ALIGNMENT 1002 Y12-16j07.q1k chr04 35 1206 837163 838323 F 1172 95.82 1388 accept 0 ALIGNMENT 882 Y12-16j08.q1k chr14 35 1021 424538 425521 F 987 97.37 1354 accept 0 ALIGNMENT 990 Y12-16j09.p1k chr16 1168 25 101249 102402 C 1144 96.42 1437 accept 0 ALIGNMENT 662 Y12-16j09.q1k chr13 1100 34 632384 633455 C 1067 88.94 1290 reject_low 1 ALIGNMENT 921 Y12-16j09.q1k chr16 34 1096 97512 98590 F 1063 96.43 1290 accept 0 ALIGNMENT 0 Y12-16j10.q1k chr13 304 62 223833 223832 C 243 0.00 1349 reject_low 1 ALIGNMENT 819 Y12-16j10.q1k chr04 34 979 1359637 1360578 F 946 96.51 1349 accept 0 ALIGNMENT 0 Y12-16j10.q1k chr13 760 364 223775 223774 C 397 0.00 1349 reject_low 1 ALIGNMENT 854 Y12-16j10.p1k chr04 1044 15 1363174 1364196 C 1030 95.83 1482 accept 0 ALIGNMENT 54 Y12-16j10.q1k chr13 363 305 223774 223832 C 59 98.31 1349 reject_low 1 ALIGNMENT 803 Y12-16j11.p1k chr02 1 903 94366 95262 F 903 97.56 1479 accept 0 ALIGNMENT 849 Y12-16j11.q1k chr02 1018 40 98281 99267 C 979 96.42 1334 accept 0 ALIGNMENT 815 Y12-16j12.q1k chr04 35 997 496292 497254 F 963 96.05 1374 accept 0 ALIGNMENT 838 Y12-16j12.p1k chr04 992 18 498974 499949 C 975 96.51 1477 accept 0 ALIGNMENT 926 Y12-16j13.p1k chr07 17 1087 802237 803319 F 1071 97.39 1398 accept_chi 0 ALIGNMENT 719 Y12-16j13.q1k chr10 29 919 248927 249833 F 891 94.95 1259 accept_chi 1 ALIGNMENT 933 Y12-16j15.q1k chr10 33 1141 239628 240734 F 1109 95.76 1305 accept 0 ALIGNMENT 999 Y12-16j15.p1k chr10 1172 29 243435 244587 C 1144 97.03 1402 accept 0 ALIGNMENT 780 Y12-16j17.q1k chr14 30 895 624706 625574 F 866 97.34 1302 accept 0 ALIGNMENT 381 Y12-16j17.p1k chr14 602 25 629386 629951 C 578 90.83 1436 accept 0 ALIGNMENT 744 Y12-16j19.q1k chr16 28 868 900404 901244 F 841 96.43 1369 accept 0 ALIGNMENT 945 Y12-16j19.p1k chr16 1062 17 903982 905040 C 1046 97.80 1346 accept 0 ALIGNMENT 1065 Y12-16j23.p1k chr16 1297 26 902698 903973 C 1272 95.05 1348 accept 0 ALIGNMENT 974 Y12-16j23.q1k chr16 31 1181 897946 899100 F 1151 95.13 1238 accept 0 ALIGNMENT 433 Y12-16j24.q1k chr04 529 29 336180 336684 C 501 97.41 1357 accept 0 ALIGNMENT 961 Y12-16j24.p1k chr04 21 1109 330743 331820 F 1089 97.06 1369 accept 0 ALIGNMENT 933 Y12-16k01.q1k chr14 37 1147 469798 470920 F 1111 96.67 1266 accept 0 ALIGNMENT 927 Y12-16k01.p1k chr14 1126 22 473316 474425 C 1105 95.66 1408 accept 0 ALIGNMENT 983 Y12-16k02.p1k chr11 1185 25 118105 119268 C 1161 95.52 1404 accept 0 ALIGNMENT 985 Y12-16k02.q1k chr11 40 1251 114593 115816 F 1212 94.64 1380 accept 0 ALIGNMENT 0 Y12-16k03.q1k chr11 863 118 307781 307780 C 746 0.00 1303 reject_low 3 ALIGNMENT 939 Y12-16k03.q1k chr08 1224 36 84156 85366 C 1189 94.53 1303 accept 0 ALIGNMENT 72 Y12-16k03.q1k chr07 114 36 412291 412369 C 79 97.47 1303 reject_low 12 ALIGNMENT 72 Y12-16k03.q1k chr13 113 36 420582 420659 C 78 97.44 1303 reject_low 14 ALIGNMENT 72 Y12-16k03.q1k chr05 36 114 469453 469531 F 79 97.47 1303 reject_low 11 ALIGNMENT 0 Y12-16k03.p1k chr05 62 811 358465 358464 F 750 0.00 1456 reject_low 15 ALIGNMENT 41 Y12-16k03.p1k chr05 956 1124 358609 358778 F 169 75.15 1456 reject_low 15 ALIGNMENT 0 Y12-16k03.q1k chr07 863 115 412292 412291 C 749 0.00 1303 reject_low 12 ALIGNMENT 0 Y12-16k03.q1k chr13 863 114 420583 420582 C 750 0.00 1303 reject_low 14 ALIGNMENT 0 Y12-16k03.q1k chr13 863 116 586629 586628 C 748 0.00 1303 reject_low 9 ALIGNMENT 0 Y12-16k03.p1k chr02 949 892 92891 92951 C 58 0.00 1456 reject_low 4 ALIGNMENT 73 Y12-16k03.q1k chr13 115 36 372437 372516 C 80 97.50 1303 reject_low 8 ALIGNMENT 0 Y12-16k03.p1k chr02 568 62 93275 93274 C 507 0.00 1456 reject_low 4 ALIGNMENT 36 Y12-16k03.p1k chr02 891 569 92952 93274 C 323 71.21 1456 reject_low 4 ALIGNMENT 73 Y12-16k03.q1k chr13 115 36 586628 586707 C 80 97.50 1303 reject_low 9 ALIGNMENT 0 Y12-16k03.p1k chr05 892 955 358545 358608 F 64 0.00 1456 reject_low 15 ALIGNMENT 79 Y12-16k03.q1k chr11 117 32 307780 307865 C 86 97.67 1303 reject_low 3 ALIGNMENT 0 Y12-16k03.q1k chr13 863 116 372438 372437 C 748 0.00 1303 reject_low 8 ALIGNMENT 32 Y12-16k03.p1k chr02 1028 950 92811 92890 C 79 81.01 1456 reject_low 4 ALIGNMENT 70 Y12-16k03.q1k chr15 107 32 663813 663888 C 76 97.37 1303 reject_low 7 ALIGNMENT 0 Y12-16k03.q1k chr15 863 108 663814 663813 C 756 0.00 1303 reject_low 7 ALIGNMENT 76 Y12-16k03.q1k chr10 36 115 378277 378356 F 80 98.75 1303 reject_low 6 ALIGNMENT 79 Y12-16k03.q1k chr07 125 32 73810 73904 C 94 95.74 1303 reject_low 1 ALIGNMENT 0 Y12-16k03.q1k chr12 863 115 687856 687855 C 749 0.00 1303 reject_low 13 ALIGNMENT 20 Y12-16k03.p1k chr05 812 891 358465 358544 F 80 75.00 1456 reject_low 15 ALIGNMENT 1036 Y12-16k03.p1k chr08 14 1188 80224 81400 F 1175 97.02 1456 accept 0 ALIGNMENT 0 Y12-16k03.q1k chr11 112 863 379399 379398 F 752 0.00 1303 reject_low 10 ALIGNMENT 0 Y12-16k03.q1k chr07 863 126 73811 73810 C 738 0.00 1303 reject_low 1 ALIGNMENT 72 Y12-16k03.q1k chr12 114 36 687855 687933 C 79 97.47 1303 reject_low 13 ALIGNMENT 73 Y12-16k03.q1k chr11 36 111 379324 379399 F 76 98.68 1303 reject_low 10 ALIGNMENT 0 Y12-16k03.q1k chr07 115 863 823566 823565 F 749 0.00 1303 reject_low 2 ALIGNMENT 0 Y12-16k03.q1k chr05 118 863 438778 438777 F 746 0.00 1303 reject_low 5 ALIGNMENT 78 Y12-16k03.q1k chr05 36 117 438697 438778 F 82 98.78 1303 reject_low 5 ALIGNMENT 76 Y12-16k03.q1k chr07 30 114 823482 823566 F 85 96.47 1303 reject_low 2 ALIGNMENT 0 Y12-16k03.q1k chr05 115 863 469531 469530 F 749 0.00 1303 reject_low 11 ALIGNMENT 0 Y12-16k03.q1k chr10 116 863 378356 378355 F 748 0.00 1303 reject_low 6 ALIGNMENT 0 Y12-16k04.q1k chr10 713 132 523921 523920 C 582 0.00 1401 reject_low 3 ALIGNMENT 79 Y12-16k04.q1k chr12 131 43 167937 168024 C 89 97.75 1401 reject_low 7 ALIGNMENT 0 Y12-16k04.q1k chr04 132 713 1305708 1305707 F 582 0.00 1401 reject_low 2 ALIGNMENT 0 Y12-16k04.q1k chr07 713 132 561661 561660 C 582 0.00 1401 reject_low 6 ALIGNMENT 79 Y12-16k04.q1k chr08 122 43 133021 133100 C 80 100.00 1401 reject_low 10 ALIGNMENT 79 Y12-16k04.q1k chr13 131 43 259152 259239 C 89 97.75 1401 reject_low 8 ALIGNMENT 0 Y12-16k04.q1k chr04 123 713 437848 437847 F 591 0.00 1401 reject_low 9 ALIGNMENT 0 Y12-16k04.q1k chr08 713 123 133022 133021 C 591 0.00 1401 reject_low 10 ALIGNMENT 81 Y12-16k04.q1k chr10 131 42 523920 524008 C 90 97.78 1401 reject_low 3 ALIGNMENT 0 Y12-16k04.q1k chr02 132 713 227165 227164 F 582 0.00 1401 reject_low 1 ALIGNMENT 79 Y12-16k04.q1k chr07 131 43 561660 561747 C 89 97.75 1401 reject_low 6 ALIGNMENT 0 Y12-16k04.q1k chr12 713 132 167938 167937 C 582 0.00 1401 reject_low 7 ALIGNMENT 79 Y12-16k04.q1k chr01 131 43 182510 182597 C 89 97.75 1401 reject_low 4 ALIGNMENT 982 Y12-16k04.p1k chr04 16 1155 976645 977799 F 1140 96.23 1383 accept 0 ALIGNMENT 79 Y12-16k04.q1k chr05 43 131 86604 86691 F 89 97.75 1401 reject_low 5 ALIGNMENT 0 Y12-16k04.q1k chr05 132 713 86691 86690 F 582 0.00 1401 reject_low 5 ALIGNMENT 83 Y12-16k04.q1k chr02 33 131 227068 227165 F 99 95.96 1401 reject_low 1 ALIGNMENT 80 Y12-16k04.q1k chr04 42 122 437768 437848 F 81 100.00 1401 reject_low 9 ALIGNMENT 737 Y12-16k04.q1k chr04 1079 33 980019 981059 C 1047 91.79 1401 accept 0 ALIGNMENT 80 Y12-16k04.q1k chr04 36 131 1305613 1305708 F 96 95.83 1401 reject_low 2 ALIGNMENT 0 Y12-16k04.q1k chr13 713 132 259153 259152 C 582 0.00 1401 reject_low 8 ALIGNMENT 0 Y12-16k04.q1k chr01 713 132 182511 182510 C 582 0.00 1401 reject_low 4 ALIGNMENT 1001 Y12-16k06.p1k chr16 1201 14 807277 808480 C 1188 96.21 1421 ambiguous_trans 4 ALIGNMENT 992 Y12-16k06.p1k chr14 1166 14 99286 100447 C 1153 96.53 1421 ambiguous_trans 21 ALIGNMENT 992 Y12-16k06.p1k chr05 1201 14 495131 496334 C 1188 95.96 1421 ambiguous_trans 13 ALIGNMENT 992 Y12-16k06.p1k chr12 1201 14 217721 218924 C 1188 95.96 1421 ambiguous_trans_ua 14 ALIGNMENT 995 Y12-16k06.p1k chr07 1201 14 820032 821235 C 1188 96.04 1421 ambiguous_trans 9 ALIGNMENT 998 Y12-16k06.p1k chr04 1201 14 648133 649336 C 1188 96.13 1421 ambiguous_trans 5 ALIGNMENT 998 Y12-16k06.p1k chr04 1201 14 989355 990558 C 1188 96.13 1421 ambiguous_trans 6 ALIGNMENT 1009 Y12-16k06.p1k chr02 14 1201 261652 262855 F 1188 96.38 1421 ambiguous_trans 3 ALIGNMENT 994 Y12-16k06.p1k chr15 14 1201 119784 120987 F 1188 95.96 1421 ambiguous_trans 12 ALIGNMENT 992 Y12-16k06.p1k chr13 1201 14 359638 360841 C 1188 95.96 1421 ambiguous_trans 15 ALIGNMENT 984 Y12-16k06.p1k chr12 14 1201 652904 654109 F 1188 95.71 1421 ambiguous_trans 22 ALIGNMENT 998 Y12-16k06.p1k chr07 1201 14 564483 565686 C 1188 96.13 1421 ambiguous_trans 7 ALIGNMENT 1010 Y12-16k06.p1k chr04 1201 14 880934 882137 C 1188 96.46 1421 ambiguous_trans 2 ALIGNMENT 990 Y12-16k06.p1k chr16 14 1201 846490 847696 F 1188 95.88 1421 ambiguous_trans 20 ALIGNMENT 1015 Y12-16k06.q1k chr15 38 1196 700897 702053 F 1159 96.55 1391 accept 0 ALIGNMENT 991 Y12-16k06.p1k chr10 14 1201 474459 475662 F 1188 95.88 1421 ambiguous_trans 17 ALIGNMENT 994 Y12-16k06.p1k chr01 1201 14 162878 164082 C 1188 96.04 1421 ambiguous_trans 10 ALIGNMENT 991 Y12-16k06.p1k chr16 14 1201 58533 59736 F 1188 95.88 1421 ambiguous_trans 19 ALIGNMENT 989 Y12-16k06.p1k chr13 14 1166 198413 199574 F 1153 96.44 1421 ambiguous_trans 23 ALIGNMENT 992 Y12-16k06.p1k chr13 1201 14 375336 376539 C 1188 95.96 1421 ambiguous_trans 16 ALIGNMENT 966 Y12-16k06.p1k chr16 1138 14 853338 854468 C 1125 96.36 1421 ambiguous_trans 24 ALIGNMENT 1018 Y12-16k06.p1k chr02 14 1201 223118 224321 F 1188 96.63 1421 ambiguous_trans 1 ALIGNMENT 994 Y12-16k06.p1k chr13 14 1201 186246 187449 F 1188 95.96 1421 ambiguous_trans 11 ALIGNMENT 997 Y12-16k06.p1k chr04 14 1201 1097844 1099047 F 1188 96.04 1421 ambiguous_trans 8 ALIGNMENT 991 Y12-16k06.p1k chr10 14 1201 480043 481246 F 1188 95.88 1421 ambiguous_trans 18 ALIGNMENT 49 Y12-16k07.q1k chr16 798 671 844602 844730 C 128 82.81 1291 reject_low 17 ALIGNMENT 0 Y12-16k07.q1k chr04 555 861 1095457 1095456 F 307 0.00 1291 reject_low 8 ALIGNMENT 0 Y12-16k07.q1k chr06 563 861 158009 158008 F 299 0.00 1291 reject_low 2 ALIGNMENT 41 Y12-16k07.q1k chr13 798 689 202112 202221 C 110 81.82 1291 reject_low 20 ALIGNMENT 0 Y12-16k07.q1k chr13 861 557 352277 352276 C 305 0.00 1291 reject_low 6 ALIGNMENT 0 Y12-16k07.q1k chr13 651 62 837768 837767 C 590 0.00 1291 reject_low 11 ALIGNMENT 94 Y12-16k07.q1k chr16 461 554 560194 560287 F 94 100.00 1291 reject_low 7 ALIGNMENT 0 Y12-16k07.q1k chr13 799 861 372839 372838 F 63 0.00 1291 reject_low 14 ALIGNMENT 94 Y12-16k07.q1k chr07 460 562 440719 440820 F 103 98.06 1291 reject_low 4 ALIGNMENT 0 Y12-16k07.q1k chr13 452 62 352380 352379 C 391 0.00 1291 reject_low 6 ALIGNMENT 0 Y12-16k07.q1k chr16 554 861 622628 622627 F 308 0.00 1291 reject_low 3 ALIGNMENT 0 Y12-16k07.q1k chr16 861 799 56646 56645 C 63 0.00 1291 reject_low 12 ALIGNMENT 0 Y12-16k07.q1k chr15 670 62 118025 118024 C 609 0.00 1291 reject_low 16 ALIGNMENT 36 Y12-16k07.q1k chr05 792 684 312310 312418 C 109 79.82 1291 reject_low 21 ALIGNMENT 0 Y12-16k07.q1k chr11 837 861 313429 313428 F 25 0.00 1291 reject_low 5 ALIGNMENT 0 Y12-16k07.q1k chr10 676 62 59763 59762 C 615 0.00 1291 reject_low 22 ALIGNMENT 0 Y12-16k07.q1k chr16 62 460 560194 560193 F 399 0.00 1291 reject_low 7 ALIGNMENT 0 Y12-16k07.q1k chr13 799 861 378427 378426 F 63 0.00 1291 reject_low 15 ALIGNMENT 0 Y12-16k07.q1k chr13 62 670 378299 378298 F 609 0.00 1291 reject_low 15 ALIGNMENT 0 Y12-16k07.q1k chr16 555 861 560287 560286 F 307 0.00 1291 reject_low 7 ALIGNMENT 0 Y12-16k07.q1k chr06 62 460 157909 157908 F 399 0.00 1291 reject_low 2 ALIGNMENT 0 Y12-16k07.q1k chr13 861 795 837626 837625 C 67 0.00 1291 reject_low 11 ALIGNMENT 0 Y12-16k07.q1k chr04 62 676 434441 434440 F 615 0.00 1291 reject_low 13 ALIGNMENT 50 Y12-16k07.q1k chr04 677 802 434441 434566 F 126 83.33 1291 reject_low 13 ALIGNMENT 0 Y12-16k07.q1k chr10 861 744 59696 59695 C 118 0.00 1291 reject_low 22 ALIGNMENT 0 Y12-16k07.q1k chr15 861 799 117897 117896 C 63 0.00 1291 reject_low 16 ALIGNMENT 0 Y12-16k07.q1k chr08 62 456 237845 237844 F 395 0.00 1291 reject_low 1 ALIGNMENT 42 Y12-16k07.q1k chr14 793 663 519359 519490 C 131 80.15 1291 reject_low 18 ALIGNMENT 0 Y12-16k07.q1k chr14 861 794 519360 519359 C 68 0.00 1291 reject_low 18 ALIGNMENT 53 Y12-16k07.q1k chr11 677 836 313268 313429 F 160 81.25 1291 reject_low 5 ALIGNMENT 0 Y12-16k07.q1k chr14 662 62 519491 519490 C 601 0.00 1291 reject_low 18 ALIGNMENT 49 Y12-16k07.q1k chr13 671 798 378299 378427 F 128 82.81 1291 reject_low 15 ALIGNMENT 49 Y12-16k07.q1k chr13 671 798 372711 372839 F 128 82.81 1291 reject_low 14 ALIGNMENT 95 Y12-16k07.q1k chr16 453 553 622528 622628 F 101 98.02 1291 reject_low 3 ALIGNMENT 0 Y12-16k07.q1k chr11 62 676 313268 313267 F 615 0.00 1291 reject_low 5 ALIGNMENT 45 Y12-16k07.q1k chr13 677 798 362607 362729 F 122 81.97 1291 reject_low 19 ALIGNMENT 0 Y12-16k07.q1k chr13 861 799 202113 202112 C 63 0.00 1291 reject_low 20 ALIGNMENT 0 Y12-16k07.q1k chr14 461 62 374962 374961 C 400 0.00 1291 reject_low 10 ALIGNMENT 0 Y12-16k07.q1k chr07 563 861 440820 440819 F 299 0.00 1291 reject_low 4 ALIGNMENT 81 Y12-16k07.q1k chr14 556 462 374868 374961 C 95 95.79 1291 reject_low 10 ALIGNMENT 89 Y12-16k07.q1k chr02 557 461 36391 36486 C 97 97.94 1291 reject_low 9 ALIGNMENT 0 Y12-16k07.q1k chr16 62 452 622528 622527 F 391 0.00 1291 reject_low 3 ALIGNMENT 0 Y12-16k07.q1k chr13 688 62 202222 202221 C 627 0.00 1291 reject_low 20 ALIGNMENT 83 Y12-16k07.q1k chr04 453 554 1095356 1095457 F 102 94.12 1291 reject_low 8 ALIGNMENT 0 Y12-16k07.q1k chr07 62 459 440719 440718 F 398 0.00 1291 reject_low 4 ALIGNMENT 0 Y12-16k07.q1k chr14 861 557 374869 374868 C 305 0.00 1291 reject_low 10 ALIGNMENT 49 Y12-16k07.q1k chr15 798 671 117896 118024 C 128 82.81 1291 reject_low 16 ALIGNMENT 0 Y12-16k07.q1k chr16 670 62 844731 844730 C 609 0.00 1291 reject_low 17 ALIGNMENT 0 Y12-16k07.q1k chr02 460 62 36487 36486 C 399 0.00 1291 reject_low 9 ALIGNMENT 96 Y12-16k07.q1k chr06 461 562 157909 158009 F 102 99.02 1291 reject_low 2 ALIGNMENT 0 Y12-16k07.q1k chr05 683 62 312419 312418 C 622 0.00 1291 reject_low 21 ALIGNMENT 0 Y12-16k07.q1k chr04 803 861 434566 434565 F 59 0.00 1291 reject_low 13 ALIGNMENT 0 Y12-16k07.q1k chr05 861 793 312311 312310 C 69 0.00 1291 reject_low 21 ALIGNMENT 105 Y12-16k07.q1k chr08 457 565 237845 237953 F 109 99.08 1291 reject_low 1 ALIGNMENT 0 Y12-16k07.q1k chr13 62 670 372711 372710 F 609 0.00 1291 reject_low 14 ALIGNMENT 0 Y12-16k07.q1k chr04 62 452 1095356 1095355 F 391 0.00 1291 reject_low 8 ALIGNMENT 0 Y12-16k07.q1k chr16 662 62 56782 56781 C 601 0.00 1291 reject_low 12 ALIGNMENT 903 Y12-16k07.q1k chr08 34 1059 358054 359076 F 1026 97.86 1291 accept 0 ALIGNMENT 0 Y12-16k07.q1k chr16 861 799 844603 844602 C 63 0.00 1291 reject_low 17 ALIGNMENT 0 Y12-16k07.q1k chr08 566 861 237953 237952 F 296 0.00 1291 reject_low 1 ALIGNMENT 88 Y12-16k07.q1k chr13 556 453 352276 352379 C 104 96.15 1291 reject_low 6 ALIGNMENT 868 Y12-16k07.p1k chr08 940 5 361972 362906 C 936 98.18 1380 accept 0 ALIGNMENT 53 Y12-16k07.q1k chr13 794 652 837625 837767 C 143 83.92 1291 reject_low 11 ALIGNMENT 35 Y12-16k07.q1k chr10 743 677 59695 59762 C 67 88.06 1291 reject_low 22 ALIGNMENT 49 Y12-16k07.q1k chr16 798 663 56645 56781 C 136 81.62 1291 reject_low 12 ALIGNMENT 0 Y12-16k07.q1k chr13 62 676 362607 362606 F 615 0.00 1291 reject_low 19 ALIGNMENT 0 Y12-16k07.q1k chr02 861 558 36392 36391 C 304 0.00 1291 reject_low 9 ALIGNMENT 0 Y12-16k07.q1k chr13 799 861 362729 362728 F 63 0.00 1291 reject_low 19 ALIGNMENT 749 Y12-16k08.p1k chr01 1 941 156294 157225 F 941 95.22 1314 accept 0 ALIGNMENT 1011 Y12-16k08.q1k chr01 1177 33 158936 160090 C 1145 97.21 1355 accept 0 ALIGNMENT 1062 Y12-16k09.q1k chr04 36 1284 1266911 1268168 F 1249 96.00 1286 accept 0 ALIGNMENT 1040 Y12-16k09.p1k chr04 1264 16 1270970 1272231 C 1249 95.76 1453 accept 0 ALIGNMENT 954 Y12-16k10.p1k chr15 28 1143 60491 61617 F 1116 96.24 1405 accept 0 ALIGNMENT 890 Y12-16k10.q1k chr15 1011 33 64741 65721 C 979 98.06 1352 accept 0 ALIGNMENT 729 Y12-16k11.q1k chr07 852 35 552204 553020 C 818 97.19 1326 accept 0 ALIGNMENT 318 Y12-16k11.q1k chr12 771 37 813957 814690 C 735 81.90 1326 reject_low 1 ALIGNMENT 989 Y12-16k11.p1k chr07 15 1240 548876 550090 F 1226 95.51 1455 accept 0 ALIGNMENT 330 Y12-16k11.p1k chr12 15 1059 810548 811577 F 1045 78.76 1455 reject_low 1 ALIGNMENT 0 Y12-16k12.q1k chr10 743 632 265643 265642 C 112 0.00 1395 reject_low 1 ALIGNMENT 702 Y12-16k12.q1k chr10 34 863 265065 265895 F 830 95.78 1395 accept 0 ALIGNMENT 568 Y12-16k12.p1k chr10 825 30 268614 269403 C 796 91.58 1501 accept 0 ALIGNMENT 0 Y12-16k12.q1k chr10 611 62 265662 265661 C 550 0.00 1395 reject_low 1 ALIGNMENT 20 Y12-16k12.q1k chr10 631 612 265642 265661 C 20 100.00 1395 reject_low 1 ALIGNMENT 346 Y12-16k13.p1k chr12 126 834 512386 513070 F 709 85.33 1513 reject_bad_break 0 ALIGNMENT 20 Y12-16k13.p1k chr12 42 71 512310 512339 F 30 90.00 1513 reject_bad_break 0 ALIGNMENT 0 Y12-16k13.p1k chr12 72 125 512340 512385 F 54 0.00 1513 reject_bad_break 0 ALIGNMENT 1018 Y12-16k15.p1k chr12 15 1189 892916 894092 F 1175 96.34 1419 accept 0 ALIGNMENT 1024 Y12-16k15.q1k chr12 1236 32 896682 897899 C 1205 96.35 1253 accept 0 ALIGNMENT 940 Y12-16k17.p1k chr12 1182 21 666404 667594 C 1162 95.27 1370 accept 0 ALIGNMENT 792 Y12-16k17.q1k chr12 36 937 664761 665669 F 902 96.67 1261 accept 0 ALIGNMENT 855 Y12-16k18.p1k chr13 971 21 317160 318103 C 951 97.69 1501 accept 0 ALIGNMENT 905 Y12-16k18.q1k chr13 29 1049 313981 315000 F 1021 97.36 1293 accept 0 ALIGNMENT 0 Y12-16k19.q1k chr02 441 752 212935 213207 F 312 0.00 1238 reject_low 4 ALIGNMENT 0 Y12-16k19.q1k chr02 62 342 212792 212791 F 281 0.00 1238 reject_low 2 ALIGNMENT 39 Y12-16k19.q1k chr02 753 812 213208 213267 F 60 88.33 1238 reject_low 1,2,3,4 ALIGNMENT 0 Y12-16k19.q1k chr02 62 432 212747 212746 F 371 0.00 1238 reject_low 3 ALIGNMENT 0 Y12-16k19.q1k chr02 62 387 212747 212746 F 326 0.00 1238 reject_low 1 ALIGNMENT 41 Y12-16k19.q1k chr02 343 440 212837 212934 F 98 81.63 1238 reject_low 4 ALIGNMENT 383 Y12-16k19.p1k chr02 669 59 216439 217041 C 611 88.71 1583 accept 0 ALIGNMENT 0 Y12-16k19.q1k chr02 531 752 212845 213207 F 222 0.00 1238 reject_low 3 ALIGNMENT 0 Y12-16k19.q1k chr02 480 752 212929 213207 F 273 0.00 1238 reject_low 2 ALIGNMENT 65 Y12-16k19.q1k chr02 388 524 212747 212883 F 137 83.21 1238 reject_low 1 ALIGNMENT 763 Y12-16k19.q1k chr02 33 888 212438 213290 F 856 97.31 1238 accept 0 ALIGNMENT 0 Y12-16k19.q1k chr02 525 752 212884 213207 F 228 0.00 1238 reject_low 1 ALIGNMENT 0 Y12-16k19.q1k chr02 62 342 212837 212836 F 281 0.00 1238 reject_low 4 ALIGNMENT 45 Y12-16k19.q1k chr02 433 530 212747 212844 F 98 82.65 1238 reject_low 3 ALIGNMENT 59 Y12-16k19.q1k chr02 343 479 212792 212928 F 137 81.75 1238 reject_low 2 ALIGNMENT 1037 Y12-16k20.q1k chr02 35 1234 381702 382900 F 1200 96.08 1289 accept 0 ALIGNMENT 991 Y12-16k20.p1k chr02 1237 14 384910 386128 C 1224 94.85 1413 accept 0 ALIGNMENT 0 Y12-16k21.q1k chr12 62 581 410720 410719 F 520 0.00 1247 reject_low 1 ALIGNMENT 146 Y12-16k21.q1k chr12 582 849 410720 410987 F 268 85.07 1247 reject_low 1 ALIGNMENT 1014 Y12-16k21.p1k chr12 20 1278 229589 230848 F 1259 95.15 1385 accept 0 ALIGNMENT 755 Y12-16k21.q1k chr12 849 34 233819 234634 C 816 98.65 1247 accept 0 ALIGNMENT 841 Y12-16k22.p1k chr13 1 1031 42847 43873 F 1031 94.96 1337 accept 0 ALIGNMENT 912 Y12-16k22.q1k chr13 1046 35 47060 48078 C 1012 97.53 1288 accept 0 ALIGNMENT 995 Y12-16k23.q1k chr04 1169 36 55517 56649 C 1134 97.18 1202 accept 0 ALIGNMENT 958 Y12-16k23.p1k chr04 18 1194 50500 51668 F 1177 95.24 1336 accept 0 ALIGNMENT 869 Y12-16k24.p1k chr07 18 1134 219896 221006 F 1117 94.36 1327 accept 0 ALIGNMENT 1025 Y12-16k24.q1k chr07 1240 38 223403 224612 C 1203 96.51 1242 accept 0 ALIGNMENT 963 Y12-16l01.p1k chr14 18 1149 246715 247855 F 1132 96.11 1375 accept 0 ALIGNMENT 954 Y12-16l01.q1k chr14 1214 38 250085 251290 C 1177 95.58 1327 accept 0 ALIGNMENT 809 Y12-16l02.p1k chr11 18 918 199478 200381 F 901 97.89 1413 accept 0 ALIGNMENT 33 Y12-16l02.q1k chr13 365 544 476026 476205 F 180 73.33 1349 reject_low 1 ALIGNMENT 0 Y12-16l02.q1k chr13 545 640 476206 476301 F 96 0.00 1349 reject_low 1 ALIGNMENT 0 Y12-16l02.q1k chr13 62 364 476026 476025 F 303 0.00 1349 reject_low 1 ALIGNMENT 1013 Y12-16l02.q1k chr11 1227 34 203892 205100 C 1194 95.64 1349 accept 0 ALIGNMENT 129 Y12-16l02.q1k chr13 641 1088 476302 476753 F 448 76.56 1349 reject_low 1 ALIGNMENT 899 Y12-16l03.q1k chr09 36 1090 143368 144445 F 1055 96.49 1321 accept 0 ALIGNMENT 1017 Y12-16l03.p1k chr09 1164 29 147102 148244 C 1136 97.10 1427 accept 0 ALIGNMENT 990 Y12-16l04.q1k chr12 1154 37 624730 625859 C 1118 97.41 1353 accept 0 ALIGNMENT 922 Y12-16l04.p1k chr12 19 1099 620341 621449 F 1081 96.58 1354 accept 0 ALIGNMENT 0 Y12-16l05.p1k chr15 221 866 594759 594758 F 646 0.00 1409 reject_low 32 ALIGNMENT 506 Y12-16l05.p1k chr14 24 1015 519215 520218 F 992 85.28 1409 reject_low 7 ALIGNMENT 582 Y12-16l05.p1k chr16 16 1015 844450 845466 F 1000 87.30 1409 reject_low 17 ALIGNMENT 858 Y12-16l05.q1k chr15 1129 36 597994 599094 C 1094 93.97 1300 reject_low 9 ALIGNMENT 615 Y12-16l05.p1k chr07 1016 16 822257 823269 C 1001 88.31 1409 reject_low 3 ALIGNMENT 844 Y12-16l05.q1k chr05 36 1122 445038 446130 F 1087 93.56 1300 reject_low 15 ALIGNMENT 831 Y12-16l05.q1k chr13 1129 36 187343 188443 C 1094 93.14 1300 reject_low 12 ALIGNMENT 976 Y12-16l05.q1k chr07 36 1122 819038 820130 F 1087 97.61 1300 reject_low 3 ALIGNMENT 938 Y12-16l05.p1k chr02 16 1091 221082 222180 F 1076 97.21 1409 ambiguous_trans 0 ALIGNMENT 567 Y12-16l05.p1k chr08 890 16 548719 549595 C 875 89.14 1409 reject_low 6 ALIGNMENT 964 Y12-16l05.q1k chr08 36 1122 545250 546342 F 1087 97.24 1300 reject_low 6 ALIGNMENT 814 Y12-16l05.q1k chr10 1129 38 475556 476654 C 1092 92.67 1300 reject_low 24 ALIGNMENT 942 Y12-16l05.p1k chr13 1091 16 361779 362875 C 1076 97.30 1409 ambiguous_trans 1 ALIGNMENT 608 Y12-16l05.p1k chr13 16 1015 184212 185222 F 1000 88.10 1409 reject_low 12 ALIGNMENT 0 Y12-16l05.p1k chr05 131 866 449452 449451 F 736 0.00 1409 reject_low 31 ALIGNMENT 0 Y12-16l05.p1k chr01 866 305 160240 160239 C 562 0.00 1409 reject_low 28 ALIGNMENT 830 Y12-16l05.q1k chr16 38 1074 852273 853308 F 1037 94.21 1300 reject_low 13 ALIGNMENT 700 Y12-16l05.p1k chr14 1082 16 101395 102481 C 1067 90.07 1409 reject_low 2 ALIGNMENT 584 Y12-16l05.p1k chr01 1016 24 165104 166112 C 993 87.61 1409 reject_low 27 ALIGNMENT 803 Y12-16l05.q1k chr16 38 1122 806285 807375 F 1085 92.35 1300 reject_low 25 ALIGNMENT 603 Y12-16l05.p1k chr15 16 1015 117744 118760 F 1000 88.00 1409 reject_low 11 ALIGNMENT 961 Y12-16l05.q1k chr14 36 1122 98250 99342 F 1087 97.15 1300 reject_low 2 ALIGNMENT 587 Y12-16l05.p1k chr16 24 1015 56503 57509 F 992 87.60 1409 reject_low 14 ALIGNMENT 0 Y12-16l05.p1k chr15 62 138 594678 594677 F 77 0.00 1409 reject_low 32 ALIGNMENT 587 Y12-16l05.p1k chr05 1016 24 448257 449265 C 993 87.61 1409 reject_low 15 ALIGNMENT 605 Y12-16l05.p1k chr02 16 1015 259618 260628 F 1000 88.00 1409 reject_low 4 ALIGNMENT 841 Y12-16l05.q1k chr13 36 1122 374342 375434 F 1087 93.47 1300 reject_low 22 ALIGNMENT 843 Y12-16l05.q1k chr15 1129 36 120881 121981 C 1094 93.51 1300 reject_low 11 ALIGNMENT 618 Y12-16l05.p1k chr07 16 1015 535806 536822 F 1000 88.60 1409 reject_low 10 ALIGNMENT 846 Y12-16l05.q1k chr12 1129 36 654003 655103 C 1094 93.60 1300 reject_low 20 ALIGNMENT 843 Y12-16l05.q1k chr13 1129 36 199510 200610 C 1094 93.51 1300 reject_low 16 ALIGNMENT 611 Y12-16l05.p1k chr15 16 1015 594863 595873 F 1000 88.20 1409 reject_low 9 ALIGNMENT 1011 Y12-16l05.q1k chr02 1129 36 224215 225315 C 1094 98.54 1300 ambiguous_trans 0 ALIGNMENT 978 Y12-16l05.q1k chr14 1129 36 522321 523421 C 1094 97.53 1300 reject_low 7 ALIGNMENT 849 Y12-16l05.q1k chr07 1129 36 538943 540043 C 1094 93.69 1300 reject_low 10 ALIGNMENT 972 Y12-16l05.q1k chr02 1129 36 262749 263852 C 1094 97.44 1300 reject_low 4 ALIGNMENT 616 Y12-16l05.p1k chr16 1016 16 855490 856508 C 1001 88.41 1409 reject_low 13 ALIGNMENT 0 Y12-16l05.p1k chr14 305 866 525063 525062 F 562 0.00 1409 reject_low 29 ALIGNMENT 0 Y12-16l05.p1k chr08 775 62 548721 548720 C 714 0.00 1409 reject_low 30 ALIGNMENT 1000 Y12-16l05.q1k chr13 36 1122 358644 359736 F 1087 98.34 1300 ambiguous_trans 1 ALIGNMENT 585 Y12-16l05.p1k chr04 16 1015 1095804 1096820 F 1000 87.40 1409 reject_low 26 ALIGNMENT 137 Y12-16l05.p1k chr14 24 304 524781 525063 F 281 85.77 1409 reject_low 29 ALIGNMENT 621 Y12-16l05.p1k chr10 16 1015 472419 473435 F 1000 88.60 1409 reject_low 8 ALIGNMENT 101 Y12-16l05.p1k chr08 945 776 548548 548720 C 170 88.24 1409 reject_low 30 ALIGNMENT 50 Y12-16l05.p1k chr15 139 220 594678 594759 F 82 89.02 1409 reject_low 32 ALIGNMENT 847 Y12-16l05.q1k chr04 36 1122 988361 989453 F 1087 93.65 1300 reject_low 21 ALIGNMENT 896 Y12-16l05.p1k chr04 16 1091 802942 804037 F 1076 95.91 1409 reject_low 18 ALIGNMENT 581 Y12-16l05.p1k chr13 24 1015 196383 197389 F 992 87.40 1409 reject_low 16 ALIGNMENT 831 Y12-16l05.q1k chr16 1129 36 847590 848690 C 1094 93.14 1300 reject_low 17 ALIGNMENT 846 Y12-16l05.q1k chr16 1129 36 59630 60730 C 1094 93.60 1300 reject_low 14 ALIGNMENT 967 Y12-16l05.q1k chr05 36 1122 494137 495229 F 1087 97.33 1300 reject_low 19 ALIGNMENT 961 Y12-16l05.q1k chr12 36 1122 216727 217819 F 1087 97.15 1300 reject_low 5 ALIGNMENT 197 Y12-16l05.p1k chr01 304 24 160239 160524 C 281 92.17 1409 reject_low 28 ALIGNMENT 832 Y12-16l05.q1k chr07 36 1122 563489 564581 F 1087 93.19 1300 reject_low 23 ALIGNMENT 849 Y12-16l05.q1k chr10 1129 36 481140 482240 C 1094 93.69 1300 reject_low 8 ALIGNMENT 50 Y12-16l05.p1k chr05 24 130 449346 449452 F 107 85.98 1409 reject_low 31 ALIGNMENT 580 Y12-16l05.p1k chr12 1016 16 219946 220964 C 1001 87.21 1409 reject_low 5 ALIGNMENT 943 Y12-16l09.p1k chr10 14 1106 442634 443720 F 1093 96.61 1457 accept 0 ALIGNMENT 1038 Y12-16l09.q1k chr10 1246 38 447496 448710 C 1209 96.36 1339 accept 0 ALIGNMENT 893 Y12-16l11.q1k chr08 1048 28 467470 468503 C 1021 97.26 1257 accept 0 ALIGNMENT 593 Y12-16l12.q1k chr12 690 32 456402 457060 C 659 96.97 1527 accept_chi 1 ALIGNMENT 953 Y12-16l12.p1k chr16 27 1197 906858 908036 F 1171 95.22 1437 accept_chi 0 ALIGNMENT 593 Y12-16l12.q1k chr12 690 32 465539 466197 C 659 96.97 1527 accept_chi 2 ALIGNMENT 865 Y12-16l13.q1k chr09 1019 33 145265 146249 C 987 97.37 1390 accept_chi 1 ALIGNMENT 969 Y12-16l13.p1k chr02 1162 30 552647 553797 C 1133 97.00 1416 accept_chi 0 ALIGNMENT 1018 Y12-16l14.q1k chr04 36 1229 161564 162769 F 1194 96.48 1324 accept 0 ALIGNMENT 912 Y12-16l14.p1k chr04 1053 2 164531 165593 C 1052 96.58 1349 accept 0 ALIGNMENT 827 Y12-16l15.q1k chr11 920 31 69207 70095 C 890 97.98 1307 accept 0 ALIGNMENT 719 Y12-16l15.p1k chr11 17 872 64403 65263 F 856 96.38 1428 accept 0 ALIGNMENT 1011 Y12-16l16.p1k chr15 27 1173 377559 378722 F 1147 96.77 1383 accept 0 ALIGNMENT 668 Y12-16l16.q1k chr15 789 37 382682 383434 C 753 97.48 1389 accept 0 ALIGNMENT 401 Y12-16l17.q1k chr12 37 448 490132 490543 F 412 99.27 1287 reject_low 2 ALIGNMENT 0 Y12-16l17.q1k chr12 449 910 490543 490542 F 462 0.00 1287 reject_low 2 ALIGNMENT 963 Y12-16l17.p1k chr12 1112 14 465606 466714 C 1099 96.72 1356 accept 1 ALIGNMENT 1011 Y12-16l17.q1k chr12 37 1229 461301 462522 F 1193 95.81 1287 accept 1 ALIGNMENT 1011 Y12-16l17.q1k chr12 37 1229 452164 453385 F 1193 95.81 1287 accept 0 ALIGNMENT 963 Y12-16l17.p1k chr12 1112 14 456469 457577 C 1099 96.72 1356 accept 0 ALIGNMENT 1034 Y12-16l18.q1k chr15 28 1202 247913 249100 F 1175 96.94 1309 accept 0 ALIGNMENT 914 Y12-16l18.p1k chr15 1115 16 251942 253055 C 1100 96.73 1354 accept 0 ALIGNMENT 886 Y12-16l19.p1k chr02 2 1211 712315 713504 F 1210 93.55 1424 accept 0 ALIGNMENT 1019 Y12-16l19.q1k chr02 1241 36 715780 716998 C 1206 95.27 1266 accept 0 ALIGNMENT 999 Y12-16l20.q1k chr03 1204 36 130878 132047 C 1169 95.30 1289 accept 0 ALIGNMENT 900 Y12-16l20.p1k chr03 14 1124 126772 127887 F 1111 95.05 1363 accept 0 ALIGNMENT 999 Y12-16l21.q1k chr04 36 1161 232594 233732 F 1126 96.18 1302 accept 0 ALIGNMENT 900 Y12-16l21.p1k chr04 1047 12 236355 237384 C 1036 96.72 1407 accept 0 ALIGNMENT 937 Y12-16l22.p1k chr02 17 1080 534155 535208 F 1064 97.37 1390 reject_bad_break 0 ALIGNMENT 593 Y12-16l22.q1k chr02 1252 499 536584 537349 C 754 94.43 1341 reject_bad_break 0 ALIGNMENT 413 Y12-16l22.q1k chr02 466 36 537349 537779 C 431 99.54 1341 reject_bad_break 0 ALIGNMENT 0 Y12-16l22.q1k chr02 498 467 537350 537348 C 32 0.00 1341 reject_bad_break 0 ALIGNMENT 1002 Y12-16l24.q1k chr10 42 1226 727699 728885 F 1185 95.27 1226 reject_low 2 ALIGNMENT 174 Y12-16l24.q1k chr06 522 227 14309 14604 C 296 86.82 1226 reject_low 1 ALIGNMENT 344 Y12-16l24.q1k chr04 1226 745 16830 17314 C 482 90.25 1226 reject_low 3 ALIGNMENT 243 Y12-16l24.q1k chr14 487 42 16160 16605 C 446 85.43 1226 accept_tel 0 ALIGNMENT 877 Y12-16l24.p1k chr06 21 1075 10706 11760 F 1055 95.26 1331 reject_low 1 ALIGNMENT 416 Y12-16l24.q1k chr14 1226 656 15458 16030 C 571 91.07 1226 accept_tel 0 ALIGNMENT 0 Y12-16l24.q1k chr06 226 62 14605 14604 C 165 0.00 1226 reject_low 1 ALIGNMENT 255 Y12-16l24.q1k chr04 522 42 17581 18061 C 481 84.82 1226 reject_low 3 ALIGNMENT 0 Y12-16l24.q1k chr04 744 523 17315 17580 C 222 0.00 1226 reject_low 3 ALIGNMENT 347 Y12-16l24.q1k chr06 1226 745 13555 14039 C 482 90.46 1226 reject_low 1 ALIGNMENT 0 Y12-16l24.q1k chr03 319 840 314796 314795 F 522 0.00 1226 reject_low 4 ALIGNMENT 0 Y12-16l24.q1k chr06 744 523 14040 14308 C 222 0.00 1226 reject_low 1 ALIGNMENT 0 Y12-16l24.q1k chr14 655 488 16031 16159 C 168 0.00 1226 accept_tel 0 ALIGNMENT 107 Y12-16l24.q1k chr03 47 318 314525 314796 F 272 80.51 1226 reject_low 4 ALIGNMENT 866 Y12-16l24.p1k chr14 21 1075 12613 13664 F 1055 94.98 1331 accept_tel 0 ALIGNMENT 0 Y12-16m01.p1k chr05 62 418 545617 545616 F 357 0.00 1367 reject_low 1 ALIGNMENT 222 Y12-16m01.p1k chr05 419 972 545617 546174 F 554 80.87 1367 reject_low 1 ALIGNMENT 912 Y12-16m01.p1k chr04 16 1088 653210 654294 F 1073 96.09 1367 accept 0 ALIGNMENT 1062 Y12-16m01.q1k chr04 1281 36 656263 657508 C 1246 95.99 1281 accept 0 ALIGNMENT 45 Y12-16m02.p1k chr02 124 221 212747 212844 F 98 82.65 1387 reject_low 3 ALIGNMENT 0 Y12-16m02.p1k chr02 62 78 212747 212746 F 17 0.00 1387 reject_low 1 ALIGNMENT 0 Y12-16m02.p1k chr02 222 494 212845 213156 F 273 0.00 1387 reject_low 3 ALIGNMENT 45 Y12-16m02.p1k chr02 495 576 213157 213238 F 82 85.37 1387 reject_low 1,2,3 ALIGNMENT 599 Y12-16m02.q1k chr02 729 32 217488 218183 C 698 96.13 1285 accept 0 ALIGNMENT 41 Y12-16m02.p1k chr02 34 131 212837 212934 F 98 81.63 1387 reject_low 4 ALIGNMENT 0 Y12-16m02.p1k chr02 216 494 212884 213156 F 279 0.00 1387 reject_low 1 ALIGNMENT 65 Y12-16m02.p1k chr02 79 215 212747 212883 F 137 83.21 1387 reject_low 1 ALIGNMENT 1020 Y12-16m02.p1k chr02 17 1179 212729 213891 F 1163 96.39 1387 accept 0 ALIGNMENT 0 Y12-16m02.p1k chr02 62 123 212747 212746 F 62 0.00 1387 reject_low 3 ALIGNMENT 0 Y12-16m02.p1k chr02 132 443 212935 213207 F 312 0.00 1387 reject_low 4 ALIGNMENT 43 Y12-16m02.p1k chr02 444 525 213208 213289 F 82 84.15 1387 reject_low 4 ALIGNMENT 0 Y12-16m02.p1k chr02 577 806 213238 213237 F 230 0.00 1387 reject_low 1,2,3 ALIGNMENT 59 Y12-16m02.p1k chr02 34 170 212792 212928 F 137 81.75 1387 reject_low 2 ALIGNMENT 0 Y12-16m02.p1k chr02 171 494 212929 213156 F 324 0.00 1387 reject_low 2 ALIGNMENT 0 Y12-16m02.p1k chr02 526 806 213289 213288 F 281 0.00 1387 reject_low 4 ALIGNMENT 918 Y12-16m04.q1k chr13 37 1119 914160 915261 F 1083 96.03 1347 accept 0 ALIGNMENT 1004 Y12-16m04.p1k chr13 1153 18 918390 919539 C 1136 97.18 1364 accept 0 ALIGNMENT 950 Y12-16m04.p1k chr15 1153 18 1078567 1079716 C 1136 95.69 1364 reject_low 2 ALIGNMENT 972 Y12-16m04.p1k chr16 18 1153 11426 12574 F 1136 96.21 1364 reject_low 1 ALIGNMENT 1062 Y12-16m05.q1k chr04 36 1272 1361057 1362293 F 1237 96.04 1297 accept 0 ALIGNMENT 922 Y12-16m05.p1k chr04 1154 14 1364349 1365504 C 1141 94.74 1427 accept 0 ALIGNMENT 918 Y12-16m06.p1k chr11 1 1086 46906 47991 F 1086 95.76 1349 accept 0 ALIGNMENT 995 Y12-16m06.q1k chr11 1235 34 50199 51397 C 1202 96.17 1374 accept 0 ALIGNMENT 961 Y12-16m08.p1k chr15 1220 16 1010140 1011337 C 1205 94.36 1435 accept 0 ALIGNMENT 1013 Y12-16m08.q1k chr15 34 1223 1006005 1007205 F 1190 96.64 1345 accept 0 ALIGNMENT 89 Y12-16m09.q1k chr01 236 143 182504 182597 C 94 98.94 1267 reject_low 6 ALIGNMENT 82 Y12-16m09.q1k chr08 232 143 133011 133100 C 90 97.78 1267 reject_low 12 ALIGNMENT 0 Y12-16m09.q1k chr04 141 62 981051 981050 C 80 0.00 1267 reject_low 11 ALIGNMENT 0 Y12-16m09.q1k chr12 854 249 167920 167919 C 606 0.00 1267 reject_low 1 ALIGNMENT 0 Y12-16m09.q1k chr12 142 62 168025 168024 C 81 0.00 1267 reject_low 1 ALIGNMENT 20 Y12-16m09.p1k chr06 756 789 210364 210397 F 34 100.00 1530 reject_low 3 ALIGNMENT 88 Y12-16m09.q1k chr13 232 143 259150 259239 C 90 100.00 1267 reject_low 10 ALIGNMENT 0 Y12-16m09.q1k chr05 62 142 86604 86603 F 81 0.00 1267 reject_low 2 ALIGNMENT 0 Y12-16m09.q1k chr01 142 62 182598 182597 C 81 0.00 1267 reject_low 6 ALIGNMENT 0 Y12-16m09.q1k chr07 142 62 561748 561747 C 81 0.00 1267 reject_low 9 ALIGNMENT 0 Y12-16m09.q1k chr02 62 141 227077 227076 F 80 0.00 1267 reject_low 8 ALIGNMENT 0 Y12-16m09.p1k chr10 755 62 701693 701692 C 694 0.00 1530 reject_low 4 ALIGNMENT 0 Y12-16m09.q1k chr04 854 227 980967 980966 C 628 0.00 1267 reject_low 11 ALIGNMENT 0 Y12-16m09.q1k chr08 854 233 133012 133011 C 622 0.00 1267 reject_low 12 ALIGNMENT 90 Y12-16m09.q1k chr05 143 244 86604 86705 F 102 97.06 1267 reject_low 2 ALIGNMENT 0 Y12-16m09.q1k chr07 854 233 561659 561658 C 622 0.00 1267 reject_low 9 ALIGNMENT 0 Y12-16m09.q1k chr04 234 854 1305711 1305710 F 621 0.00 1267 reject_low 7 ALIGNMENT 933 Y12-16m09.q1k chr10 1251 32 522881 524118 C 1220 93.44 1267 accept 0 ALIGNMENT 0 Y12-16m09.q1k chr08 142 62 133101 133100 C 81 0.00 1267 reject_low 12 ALIGNMENT 0 Y12-16m09.q1k chr04 62 140 1305618 1305617 F 79 0.00 1267 reject_low 7 ALIGNMENT 88 Y12-16m09.q1k chr04 141 233 1305618 1305711 F 93 98.92 1267 reject_low 7 ALIGNMENT 0 Y12-16m09.q1k chr04 62 140 437767 437766 F 79 0.00 1267 reject_low 5 ALIGNMENT 90 Y12-16m09.q1k chr04 141 234 437767 437860 F 94 98.94 1267 reject_low 5 ALIGNMENT 88 Y12-16m09.q1k chr07 232 143 561658 561747 C 90 100.00 1267 reject_low 9 ALIGNMENT 0 Y12-16m09.q1k chr01 854 237 182505 182504 C 618 0.00 1267 reject_low 6 ALIGNMENT 0 Y12-16m09.q1k chr13 854 233 259151 259150 C 622 0.00 1267 reject_low 10 ALIGNMENT 93 Y12-16m09.q1k chr12 248 143 167919 168024 C 106 97.17 1267 reject_low 1 ALIGNMENT 84 Y12-16m09.q1k chr04 226 142 980966 981050 C 85 100.00 1267 reject_low 11 ALIGNMENT 0 Y12-16m09.q1k chr05 245 854 86705 86704 F 610 0.00 1267 reject_low 2 ALIGNMENT 90 Y12-16m09.q1k chr02 142 232 227077 227167 F 91 100.00 1267 reject_low 8 ALIGNMENT 0 Y12-16m09.q1k chr04 235 854 437860 437859 F 620 0.00 1267 reject_low 5 ALIGNMENT 20 Y12-16m09.p1k chr10 789 756 701659 701692 C 34 100.00 1530 reject_low 4 ALIGNMENT 0 Y12-16m09.q1k chr13 142 62 259240 259239 C 81 0.00 1267 reject_low 10 ALIGNMENT 847 Y12-16m09.p1k chr10 16 1011 518427 519423 F 996 97.09 1530 accept 0 ALIGNMENT 0 Y12-16m09.p1k chr06 62 755 210364 210363 F 694 0.00 1530 reject_low 3 ALIGNMENT 0 Y12-16m09.q1k chr02 233 854 227167 227166 F 622 0.00 1267 reject_low 8 ALIGNMENT 0 Y12-16m11.p1k chr05 415 826 270195 270194 F 412 0.00 1404 reject_low 1 ALIGNMENT 0 Y12-16m11.p1k chr05 62 355 270139 270138 F 294 0.00 1404 reject_low 1 ALIGNMENT 42 Y12-16m11.p1k chr05 356 414 270139 270195 F 59 93.22 1404 reject_low 1 ALIGNMENT 973 Y12-16m11.q1k chr09 1200 36 259440 260611 C 1165 96.14 1260 accept 0 ALIGNMENT 977 Y12-16m11.p1k chr09 19 1146 256677 257819 F 1128 96.72 1404 accept 0 ALIGNMENT 0 Y12-16m12.p1k chr10 635 633 120696 120719 C 3 0.00 1456 reject_low 21 ALIGNMENT 57 Y12-16m12.p1k chr11 731 556 144790 144959 C 176 78.98 1456 reject_low 26 ALIGNMENT 0 Y12-16m12.p1k chr11 62 837 142538 142537 F 776 0.00 1456 reject_low 14 ALIGNMENT 0 Y12-16m12.p1k chr10 459 62 121088 121087 C 398 0.00 1456 reject_low 33 ALIGNMENT 0 Y12-16m12.p1k chr11 752 621 144655 144678 C 132 0.00 1456 reject_low 27 ALIGNMENT 21 Y12-16m12.p1k chr11 795 753 144612 144654 C 43 83.72 1456 reject_low 7,22,25,26,27,28,29,30 ALIGNMENT 0 Y12-16m12.p1k chr11 555 62 144960 144959 C 494 0.00 1456 reject_low 26 ALIGNMENT 32 Y12-16m12.p1k chr11 515 466 144670 144719 C 50 88.00 1456 reject_low 30 ALIGNMENT 80 Y12-16m12.p1k chr11 514 674 142472 142632 F 161 83.23 1456 reject_low 12 ALIGNMENT 39 Y12-16m12.p1k chr10 688 629 120844 120903 C 60 88.33 1456 reject_low 33 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 1110 120580 120646 C 75 0.00 1456 reject_low 2 ALIGNMENT 0 Y12-16m12.p1k chr10 822 62 121040 121039 C 761 0.00 1456 reject_low 31 ALIGNMENT 65 Y12-16m12.p1k chr11 452 560 142524 142632 F 109 87.16 1456 reject_low 13 ALIGNMENT 52 Y12-16m12.p1k chr11 566 466 144676 144773 C 101 85.15 1456 reject_low 28 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 864 120580 120668 C 321 0.00 1456 reject_low 9 ALIGNMENT 142 Y12-16m12.p1k chr10 121 354 122249 122482 F 234 87.18 1456 reject_low 3 ALIGNMENT 0 Y12-16m12.p1k chr10 449 62 121041 121040 C 388 0.00 1456 reject_low 6 ALIGNMENT 0 Y12-16m12.p1k chr11 804 815 142519 142572 F 12 0.00 1456 reject_low 19 ALIGNMENT 42 Y12-16m12.p1k chr11 823 889 142223 142289 F 67 88.06 1456|0,5 reject_low 18 ALIGNMENT 0 Y12-16m12.p1k chr10 893 888 120984 121088 C 6 0.00 1456 reject_low 32 ALIGNMENT 88 Y12-16m12.p1k chr11 738 460 144675 144941 C 279 79.21 1456 reject_low 22 ALIGNMENT 136 Y12-16m12.p1k chr11 731 56 144736 145381 C 676 75.59 1456 reject_low 7 ALIGNMENT 29 Y12-16m12.p1k chr11 766 803 142538 142575 F 38 92.11 1456 reject_low 15 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 663 120580 120668 C 522 0.00 1456 reject_low 21,24 ALIGNMENT 91 Y12-16m12.p1k chr10 791 450 120669 121040 C 342 76.90 1456 reject_low 6 ALIGNMENT 39 Y12-16m12.p1k chr10 577 496 120718 120799 C 82 82.93 1456 reject_low 24 ALIGNMENT 0 Y12-16m12.p1k chr11 561 745 142632 142631 F 185 0.00 1456 reject_low 13 ALIGNMENT 0 Y12-16m12.p1k chr11 62 752 142225 142224 F 691 0.00 1456 reject_low 23 ALIGNMENT 0 Y12-16m12.p1k chr10 817 818 120793 120777 C 0 0.00 1456 reject_low 16 ALIGNMENT 38 Y12-16m12.p1k chr10 863 763 120669 120775 C 101 80.20 1456 reject_low 9 ALIGNMENT 0 Y12-16m12.p1k chr10 966 930 120899 120947 C 37 0.00 1456 reject_low 31,32 ALIGNMENT 114 Y12-16m12.p1k chr11 450 738 142279 142582 F 289 80.28 1456 reject_low 20 ALIGNMENT 0 Y12-16m12.p1k chr11 752 732 144655 144789 C 21 0.00 1456 reject_low 26 ALIGNMENT 0 Y12-16m12.p1k chr10 547 62 120805 120804 C 486 0.00 1456 reject_low 21 ALIGNMENT 0 Y12-16m12.p1k chr10 817 818 120793 120972 C 0 0.00 1456 reject_low 17 ALIGNMENT 0 Y12-16m12.p1k chr11 62 449 142279 142278 F 388 0.00 1456 reject_low 20 ALIGNMENT 0 Y12-16m12.p1k chr11 465 62 144774 144773 C 404 0.00 1456 reject_low 28 ALIGNMENT 214 Y12-16m12.p1k chr10 1109 507 120647 121211 C 603 81.76 1456 reject_low 2 ALIGNMENT 0 Y12-16m12.p1k chr11 739 757 142583 142586 F 19 0.00 1456 reject_low 20 ALIGNMENT 33 Y12-16m12.p1k chr11 888 983 142216 142308 F 96 80.21 1456 reject_low 8 ALIGNMENT 0 Y12-16m12.p1k chr11 465 62 144720 144719 C 404 0.00 1456 reject_low 30 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 888 120580 120722 C 297 0.00 1456 reject_low 16,17,33 ALIGNMENT 0 Y12-16m12.p1k chr11 62 522 142181 142180 F 461 0.00 1456 reject_low 5 ALIGNMENT 144 Y12-16m12.p1k chr11 463 803 142178 142518 F 341 80.94 1456 reject_low 19 ALIGNMENT 0 Y12-16m12.p1k chr10 506 62 121212 121211 C 445 0.00 1456 reject_low 2 ALIGNMENT 0 Y12-16m12.p1k chr11 62 909 142295 142294 F 848 0.00 1456 reject_low 10 ALIGNMENT 0 Y12-16m12.p1k chr11 752 516 144655 144669 C 237 0.00 1456 reject_low 30 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 1002 120580 120864 C 183 0.00 1456 reject_low 31,32 ALIGNMENT 0 Y12-16m12.p1k chr10 62 120 122249 122248 F 59 0.00 1456 reject_low 3 ALIGNMENT 0 Y12-16m12.p1k chr10 573 62 121202 121201 C 512 0.00 1456 reject_low 17 ALIGNMENT 0 Y12-16m12.p1k chr10 635 578 120696 120717 C 58 0.00 1456 reject_low 24 ALIGNMENT 0 Y12-16m12.p1k chr11 885 884 142285 142455 F 0 0.00 1456 reject_low 18 ALIGNMENT 0 Y12-16m12.p1k chr10 762 62 120776 120775 C 701 0.00 1456 reject_low 9 ALIGNMENT 32 Y12-16m12.p1k chr11 838 878 142538 142578 F 41 92.68 1456 reject_low 14 ALIGNMENT 21 Y12-16m12.p1k chr10 1001 967 120865 120898 C 35 88.57 1456 reject_low 31,32 ALIGNMENT 0 Y12-16m12.p1k chr11 723 745 142623 142622 F 23 0.00 1456 reject_low 11 ALIGNMENT 38 Y12-16m12.p1k chr11 829 878 142343 142392 F 50 92.00 1456 reject_low 23 ALIGNMENT 0 Y12-16m12.p1k chr11 689 878 142461 142449 F 190 0.00 1456 reject_low 4 ALIGNMENT 0 Y12-16m12.p1k chr10 828 62 121148 121147 C 767 0.00 1456 reject_low 32 ALIGNMENT 0 Y12-16m12.p1k chr11 62 513 142472 142471 F 452 0.00 1456 reject_low 12 ALIGNMENT 24 Y12-16m12.p1k chr10 662 636 120669 120695 C 27 96.30 1456 reject_low 21,24 ALIGNMENT 130 Y12-16m12.p1k chr11 523 878 142181 142521 F 356 80.62 1456 reject_low 5 ALIGNMENT 0 Y12-16m12.p1k chr10 355 745 122482 122481 F 391 0.00 1456 reject_low 3 ALIGNMENT 42 Y12-16m12.p1k chr11 879 1001 142450 142568 F 123 80.49 1456|6,0 reject_low 4,18 ALIGNMENT 0 Y12-16m12.p1k chr10 893 890 120984 120972 C 4 0.00 1456 reject_low 31 ALIGNMENT 0 Y12-16m12.p1k chr11 818 828 142290 142342 F 11 0.00 1456 reject_low 23 ALIGNMENT 0 Y12-16m12.p1k chr11 752 739 144655 144674 C 14 0.00 1456 reject_low 22 ALIGNMENT 33 Y12-16m12.p1k chr11 816 875 142573 142632 F 60 85.00 1456 reject_low 19 ALIGNMENT 0 Y12-16m12.p1k chr11 465 62 144828 144827 C 404 0.00 1456 reject_low 27 ALIGNMENT 0 Y12-16m12.p1k chr11 465 62 144882 144881 C 404 0.00 1456 reject_low 25 ALIGNMENT 0 Y12-16m12.p1k chr10 817 689 120793 120843 C 129 0.00 1456 reject_low 33 ALIGNMENT 23 Y12-16m12.p1k chr11 910 983 142295 142365 F 74 79.73 1456 reject_low 10 ALIGNMENT 0 Y12-16m12.p1k chr11 62 462 142178 142177 F 401 0.00 1456 reject_low 19 ALIGNMENT 149 Y12-16m12.p1k chr10 817 450 120778 121154 C 368 81.25 1456 reject_low 16 ALIGNMENT 0 Y12-16m12.p1k chr10 495 62 120800 120799 C 434 0.00 1456 reject_low 24 ALIGNMENT 34 Y12-16m12.p1k chr11 758 806 142587 142635 F 49 89.80 1456 reject_low 20 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 792 120580 120668 C 393 0.00 1456 reject_low 6 ALIGNMENT 37 Y12-16m12.p1k chr11 753 817 142225 142289 F 65 86.15 1456 reject_low 23 ALIGNMENT 54 Y12-16m12.p1k chr11 620 466 144679 144827 C 155 80.00 1456 reject_low 27 ALIGNMENT 40 Y12-16m12.p1k chr11 731 630 144844 144942 C 102 81.37 1456 reject_low 29 ALIGNMENT 77 Y12-16m12.p1k chr11 450 722 142336 142623 F 273 76.56 1456 reject_low 11 ALIGNMENT 820 Y12-16m12.p1k chr10 889 19 120778 121643 C 871 98.51 1456 reject_bad_break 1 ALIGNMENT 0 Y12-16m12.p1k chr11 62 765 142538 142537 F 704 0.00 1456 reject_low 15 ALIGNMENT 68 Y12-16m12.p1k chr11 680 466 144676 144881 C 215 79.07 1456 reject_low 25 ALIGNMENT 0 Y12-16m12.p1k chr11 62 822 142223 142222 F 761 0.00 1456 reject_low 18 ALIGNMENT 718 Y12-16m12.q1k chr14 798 31 677784 678552 C 768 98.70 1373 accept_chi 0 ALIGNMENT 0 Y12-16m12.p1k chr11 752 732 144655 144735 C 21 0.00 1456 reject_low 7 ALIGNMENT 0 Y12-16m12.p1k chr10 628 621 120904 120926 C 8 0.00 1456 reject_low 33 ALIGNMENT 57 Y12-16m12.p1k chr10 889 823 120973 121039 C 67 95.52 1456 reject_low 31 ALIGNMENT 67 Y12-16m12.p1k chr10 632 548 120720 120804 C 85 92.94 1456 reject_low 21 ALIGNMENT 0 Y12-16m12.p1k chr11 62 449 142336 142335 F 388 0.00 1456 reject_low 11 ALIGNMENT 0 Y12-16m12.p1k chr11 62 887 142216 142215 F 826 0.00 1456 reject_low 8 ALIGNMENT 0 Y12-16m12.p1k chr11 629 62 144943 144942 C 568 0.00 1456 reject_low 29 ALIGNMENT 24 Y12-16m12.p1k chr10 929 894 120948 120983 C 36 88.89 1456 reject_low 31,32 ALIGNMENT 0 Y12-16m12.p1k chr11 675 745 142632 142631 F 71 0.00 1456 reject_low 12 ALIGNMENT 23 Y12-16m12.p1k chr10 1286 1185 120478 120579 C 102 76.47 1456 reject_bad_break 1 reject_low 2,6,9,16,17,21,24,31,32,33 ALIGNMENT 0 Y12-16m12.p1k chr11 459 62 144942 144941 C 398 0.00 1456 reject_low 22 ALIGNMENT 46 Y12-16m12.p1k chr10 887 818 120723 120792 C 70 88.57 1456 reject_low 16,17,33 ALIGNMENT 194 Y12-16m12.p1k chr11 54 688 141799 142460 F 635 77.48 1456 reject_low 4 ALIGNMENT 47 Y12-16m12.p1k chr10 887 829 121089 121147 C 59 93.22 1456 reject_low 32 ALIGNMENT 112 Y12-16m12.p1k chr10 620 460 120927 121087 C 161 90.06 1456 reject_low 33 ALIGNMENT 0 Y12-16m12.p1k chr11 62 451 142524 142523 F 390 0.00 1456 reject_low 13 ALIGNMENT 0 Y12-16m12.p1k chr10 449 62 121155 121154 C 388 0.00 1456 reject_low 16 ALIGNMENT 0 Y12-16m12.p1k chr11 752 681 144655 144675 C 72 0.00 1456 reject_low 25 ALIGNMENT 0 Y12-16m12.p1k chr11 752 732 144655 144843 C 21 0.00 1456 reject_low 29 ALIGNMENT 0 Y12-16m12.p1k chr11 752 567 144655 144675 C 186 0.00 1456 reject_low 28 ALIGNMENT 0 Y12-16m12.p1k chr10 1184 890 120580 120777 C 295 0.00 1456 reject_bad_break 1 ALIGNMENT 113 Y12-16m12.p1k chr10 817 574 120973 121201 C 244 84.43 1456 reject_low 17 ALIGNMENT 904 Y12-16m14.p1k chr15 1 1121 405179 406299 F 1121 94.56 1352 accept 0 ALIGNMENT 905 Y12-16m14.q1k chr15 1096 35 408077 409155 C 1062 95.76 1269 accept 0 ALIGNMENT 946 Y12-16m15.q1k chr04 1089 39 170005 171069 C 1051 98.00 1220 accept 0 ALIGNMENT 1032 Y12-16m15.p1k chr04 22 1231 166266 167475 F 1210 95.87 1379 accept 0 ALIGNMENT 880 Y12-16m16.q1k chr15 36 1070 649304 650351 F 1035 95.94 1267 accept 0 ALIGNMENT 998 Y12-16m16.p1k chr15 1237 16 653474 654698 C 1222 95.09 1369 accept 0 ALIGNMENT 1004 Y12-16m18.p1k chr10 1244 17 566887 568129 C 1228 94.95 1381 accept 0 ALIGNMENT 884 Y12-16m18.q1k chr10 33 1033 563628 564633 F 1001 97.20 1355 accept 0 ALIGNMENT 1009 Y12-16m19.p1k chr15 14 1200 130561 131759 F 1187 96.29 1362 accept 0 ALIGNMENT 916 Y12-16m19.q1k chr15 1091 36 133506 134579 C 1056 97.16 1215 accept 0 ALIGNMENT 938 Y12-16m20.q1k chr08 1135 36 76028 77130 C 1100 95.64 1305 accept 0 ALIGNMENT 930 Y12-16m20.p1k chr08 14 1228 72223 73439 F 1215 93.33 1398 accept 0 ALIGNMENT 1006 Y12-16m21.p1k chr12 20 1204 427263 428463 F 1185 96.62 1324 accept 0 ALIGNMENT 1038 Y12-16m21.q1k chr12 1194 35 430865 432031 C 1160 97.07 1196 accept 0 ALIGNMENT 981 Y12-16m22.p1k chr16 17 1222 633758 634952 F 1206 96.10 1347 accept 0 ALIGNMENT 815 Y12-16m22.q1k chr16 1004 39 638518 639481 C 966 96.17 1278 accept 0 ALIGNMENT 1010 Y12-16m23.q1k chr07 35 1185 836298 837452 F 1151 97.31 1191 accept 0 ALIGNMENT 935 Y12-16m23.p1k chr07 1128 27 839532 840621 C 1102 96.82 1343 accept 0 ALIGNMENT 997 Y12-16m24.p1k chr11 16 1157 45233 46374 F 1142 96.76 1312 accept 0 ALIGNMENT 1047 Y12-16m24.q1k chr11 1217 34 49631 50815 C 1184 97.30 1239 accept 0 ALIGNMENT 1029 Y12-16n01.p1k chr14 29 1247 288332 289556 F 1219 95.49 1401 accept 0 ALIGNMENT 930 Y12-16n01.q1k chr14 1136 37 291585 292700 C 1100 95.82 1282 accept 0 ALIGNMENT 386 Y12-16n02.p1k chr16 63 782 7948 8675 F 720 85.28 1377 reject_low 13 ALIGNMENT 0 Y12-16n02.p1k chr04 665 449 1522981 1523197 C 217 0.00 1377 reject_low 21 ALIGNMENT 0 Y12-16n02.p1k chr03 243 141 290194 290193 C 103 0.00 1377 reject_low 20 ALIGNMENT 969 Y12-16n02.q1k chr08 1211 33 14983 16170 C 1179 95.25 1315 accept 0 ALIGNMENT 596 Y12-16n02.p1k chr12 31 1006 13063 14040 F 976 87.91 1377 reject_low 1 ALIGNMENT 0 Y12-16n02.p1k chr07 725 460 1080268 1080267 C 266 0.00 1377 reject_low 16 ALIGNMENT 717 Y12-16n02.p1k chr08 31 1191 11901 13067 F 1161 88.20 1377 accept 0 ALIGNMENT 461 Y12-16n02.p1k chr03 880 63 307327 308156 C 818 86.31 1377 reject_low 11 ALIGNMENT 362 Y12-16n02.p1k chr15 782 119 1082466 1083138 C 664 85.54 1377 reject_low 15 ALIGNMENT 302 Y12-16n02.p1k chr05 451 40 63695 64101 C 412 91.99 1377 reject_low 18 ALIGNMENT 338 Y12-16n02.p1k chr07 459 32 1080267 1080693 C 428 93.46 1377 reject_low 16 ALIGNMENT 595 Y12-16n02.p1k chr02 31 856 7585 8414 F 826 91.28 1377 reject_low 8 ALIGNMENT 318 Y12-16n02.p1k chr02 459 31 809006 809433 C 429 91.84 1377 reject_low 17 ALIGNMENT 592 Y12-16n02.p1k chr01 40 880 1796 2633 F 841 90.73 1377 reject_low 6 ALIGNMENT 0 Y12-16n02.p1k chr03 725 442 290000 289999 C 284 0.00 1377 reject_low 20 ALIGNMENT 652 Y12-16n02.p1k chr09 40 880 8782 9622 F 841 92.87 1377 reject_low 3 ALIGNMENT 480 Y12-16n02.p1k chr09 880 110 433459 434238 C 771 87.81 1377 reject_low 10 ALIGNMENT 649 Y12-16n02.p1k chr07 32 880 6271 7118 F 849 92.70 1377 reject_low 2 ALIGNMENT 0 Y12-16n02.p1k chr01 425 725 177031 177030 F 301 0.00 1377 reject_low 19 ALIGNMENT 0 Y12-16n02.p1k chr05 725 452 63696 63695 C 274 0.00 1377 reject_low 18 ALIGNMENT 517 Y12-16n02.p1k chr11 40 880 1800 2648 F 841 87.63 1377 reject_low 9 ALIGNMENT 23 Y12-16n02.p1k chr04 778 666 1522869 1522980 C 113 75.22 1377 reject_low 21 ALIGNMENT 380 Y12-16n02.p1k chr13 782 63 922273 922998 C 720 85.14 1377 reject_low 14 ALIGNMENT 352 Y12-16n02.p1k chr04 448 40 1523198 1523605 C 409 95.84 1377 reject_low 21 ALIGNMENT 55 Y12-16n02.p1k chr03 441 244 289999 290193 C 198 78.28 1377 reject_low 20 ALIGNMENT 200 Y12-16n02.p1k chr01 49 424 176651 177031 F 376 85.11 1377 reject_low 19 ALIGNMENT 652 Y12-16n02.p1k chr10 40 880 8765 9605 F 841 92.87 1377 reject_low 4 ALIGNMENT 433 Y12-16n02.p1k chr15 31 745 11528 12241 F 715 87.41 1377 reject_low 12 ALIGNMENT 585 Y12-16n02.p1k chr14 880 31 781450 782300 C 850 90.35 1377 reject_low 7 ALIGNMENT 0 Y12-16n02.p1k chr02 725 460 809007 809006 C 266 0.00 1377 reject_low 17 ALIGNMENT 607 Y12-16n02.p1k chr12 856 31 1062475 1063298 C 826 91.65 1377 reject_low 5 ALIGNMENT 1024 Y12-16n04.p1k chr07 1268 23 944913 946164 C 1246 95.59 1396 accept 0 ALIGNMENT 590 Y12-16n04.q1k chr07 30 682 940911 941563 F 653 97.24 1423 accept 0 ALIGNMENT 868 Y12-16n05.q1k chr03 1159 39 208738 209864 C 1121 93.40 1364 accept 0 ALIGNMENT 851 Y12-16n05.p1k chr03 15 1032 206539 207572 F 1018 95.97 1407 accept 0 ALIGNMENT 937 Y12-16n07.p1k chr06 1185 24 134222 135390 C 1162 95.52 1432 accept 0 ALIGNMENT 953 Y12-16n07.q1k chr06 35 1152 130645 131783 F 1118 96.60 1292 accept 0 ALIGNMENT 406 Y12-16n08.q1k chr02 29 671 18185 18816 F 643 89.11 1550 accept 0 ALIGNMENT 858 Y12-16n09.p1k chr01 1049 1 104934 105963 C 1049 95.81 1451 accept_chi 0 ALIGNMENT 685 Y12-16n09.q1k chr07 784 38 606013 606759 C 747 97.99 1384 accept_chi 1 ALIGNMENT 897 Y12-16n10.q1k chr16 994 35 771878 772837 C 960 98.96 1355 accept 0 ALIGNMENT 1013 Y12-16n10.p1k chr16 15 1232 767596 768813 F 1218 95.48 1424 accept 0 ALIGNMENT 977 Y12-16n11.p1k chr07 20 1183 135531 136701 F 1164 95.45 1403 accept 0 ALIGNMENT 955 Y12-16n11.q1k chr07 1143 33 139508 140629 C 1111 97.03 1289 accept 0 ALIGNMENT 899 Y12-16n12.p1k chr11 1087 20 110737 111818 C 1068 96.63 1364 accept 0 ALIGNMENT 426 Y12-16n12.q1k chr11 36 504 106504 106973 F 469 98.29 1356 accept 0 ALIGNMENT 0 Y12-16n12.q1k chr07 62 507 515736 515735 F 446 0.00 1356 reject_low 1 ALIGNMENT 327 Y12-16n12.q1k chr07 508 995 515736 516221 F 488 89.96 1356 reject_low 1 ALIGNMENT 894 Y12-16n14.p1k chr05 1021 12 292336 293341 C 1010 97.72 1416 accept_chi 1 ALIGNMENT 982 Y12-16n14.q1k chr03 1139 34 128550 129665 C 1106 97.20 1295 accept_chi 0 ALIGNMENT 454 Y12-16n16.q1k chr08 526 30 176855 177352 C 497 97.59 1548 accept 0 ALIGNMENT 903 Y12-16n16.p1k chr08 30 1175 172851 173985 F 1146 94.50 1388 accept 0 ALIGNMENT 1036 Y12-16n17.p1k chr12 18 1226 453278 454501 F 1209 96.11 1382 accept 0 ALIGNMENT 998 Y12-16n17.q1k chr12 1174 38 456086 457240 C 1137 96.75 1277 accept 0 ALIGNMENT 1022 Y12-16n17.p1k chr12 18 1168 462415 463578 F 1151 96.96 1382 reject_low 1 ALIGNMENT 998 Y12-16n17.q1k chr12 1174 38 465223 466377 C 1137 96.75 1277 reject_low 1 ALIGNMENT 1046 Y12-16n18.q1k chr12 1236 38 457188 458405 C 1199 96.41 1309 accept 0 ALIGNMENT 999 Y12-16n18.p1k chr12 21 1172 452632 453772 F 1152 96.61 1404 accept 0 ALIGNMENT 1046 Y12-16n18.q1k chr12 1236 38 466325 467542 C 1199 96.41 1309 reject_low 1 ALIGNMENT 997 Y12-16n18.p1k chr12 21 1143 461769 462882 F 1123 97.24 1404 reject_low 1 ALIGNMENT 998 Y12-16n19.p1k chr15 1219 14 799970 801192 C 1206 95.94 1360 accept 0 ALIGNMENT 601 Y12-16n19.q1k chr15 31 684 796923 797576 F 654 98.32 1394 accept 0 ALIGNMENT 913 Y12-16n22.p1k chr04 23 1093 69161 70229 F 1071 96.36 1340 accept 0 ALIGNMENT 969 Y12-16n22.q1k chr04 1190 29 72716 73886 C 1162 94.92 1247 accept 0 ALIGNMENT 961 Y12-16n23.q1k chr12 35 1110 451664 452720 F 1076 97.86 1315 accept 0 ALIGNMENT 961 Y12-16n23.q1k chr12 35 1110 460801 461857 F 1076 97.86 1315 accept 1 ALIGNMENT 746 Y12-16n23.q1k chr12 157 949 489754 490543 F 793 98.49 1315 reject_low 2 ALIGNMENT 963 Y12-16n23.p1k chr12 1131 17 464735 465832 C 1115 96.68 1345 accept 1 ALIGNMENT 0 Y12-16n23.q1k chr12 62 156 489754 489753 F 95 0.00 1315 reject_low 2 ALIGNMENT 963 Y12-16n23.p1k chr12 1131 17 455598 456695 C 1115 96.68 1345 accept 0 ALIGNMENT 1010 Y12-16n24.q1k chr12 35 1180 738908 740064 F 1146 97.03 1236 accept 0 ALIGNMENT 865 Y12-16n24.p1k chr12 1117 14 743204 744290 C 1104 95.47 1352 accept 0 ALIGNMENT 894 Y12-16o01.p1k chr08 16 1211 212825 214014 F 1196 94.31 1366 accept 0 ALIGNMENT 889 Y12-16o01.q1k chr08 1179 32 214822 215962 C 1148 95.12 1273 accept 0 ALIGNMENT 881 Y12-16o01.p1k chr08 16 1148 214823 215947 F 1133 95.23 1366 reject_low 2 ALIGNMENT 889 Y12-16o01.q1k chr08 1179 32 212824 213964 C 1148 95.12 1273 reject_low 1 ALIGNMENT 1036 Y12-16o02.q1k chr12 34 1201 1026907 1028073 F 1168 96.92 1322 accept 0 ALIGNMENT 1033 Y12-16o02.p1k chr12 1278 21 1031553 1032809 C 1258 94.99 1344 accept 0 ALIGNMENT 246 Y12-16o03.p1k chr02 367 11 429498 429858 C 357 91.04 1362 reject_low 1 ALIGNMENT 0 Y12-16o03.p1k chr08 328 822 553504 553503 F 495 0.00 1362 reject_low 3 ALIGNMENT 990 Y12-16o03.q1k chr02 33 1222 422661 423845 F 1190 96.22 1278 accept 0 ALIGNMENT 0 Y12-16o03.p1k chr01 328 822 226856 226855 F 495 0.00 1362 reject_low 2 ALIGNMENT 199 Y12-16o03.p1k chr08 21 327 553198 553504 F 307 88.60 1362 reject_low 3 ALIGNMENT 199 Y12-16o03.p1k chr01 21 327 226550 226856 F 307 88.60 1362 reject_low 2 ALIGNMENT 1044 Y12-16o03.p1k chr02 1158 11 426850 428008 C 1148 97.82 1362 accept 0 ALIGNMENT 0 Y12-16o03.p1k chr02 822 368 429499 429498 C 455 0.00 1362 reject_low 1 ALIGNMENT 935 Y12-16o04.p1k chr04 13 1097 1116611 1117700 F 1085 96.68 1346 accept 0 ALIGNMENT 912 Y12-16o04.q1k chr04 1195 32 1119988 1121134 C 1164 94.93 1332 accept 0 ALIGNMENT 884 Y12-16o05.q1k chr11 1021 35 49047 50034 C 987 97.26 1261 accept 0 ALIGNMENT 1013 Y12-16o05.p1k chr11 20 1234 45244 46457 F 1215 95.64 1422 accept 0 ALIGNMENT 851 Y12-16o06.q1k chr08 34 1118 223605 224687 F 1085 93.92 1338 accept 0 ALIGNMENT 896 Y12-16o06.p1k chr08 1158 18 227014 228167 C 1141 94.30 1393 accept 0 ALIGNMENT 217 Y12-16o07.p1k chr07 1069 747 1001919 1002247 C 323 89.78 1381 reject_low 1 ALIGNMENT 1005 Y12-16o07.q1k chr08 33 1285 448180 449437 F 1253 94.97 1296 accept 0 ALIGNMENT 937 Y12-16o07.p1k chr08 1076 14 452306 453376 C 1063 96.90 1381 accept 0 ALIGNMENT 0 Y12-16o07.p1k chr07 746 62 1002248 1002247 C 685 0.00 1381 reject_low 1 ALIGNMENT 924 Y12-16o09.q1k chr12 31 1124 420680 421789 F 1094 96.44 1369 accept 0 ALIGNMENT 1006 Y12-16o09.p1k chr12 1188 6 425472 426648 C 1183 96.11 1387 accept 0 ALIGNMENT 886 Y12-16o10.p1k chr09 1013 1 74481 75506 C 1013 96.84 1310 accept 0 ALIGNMENT 982 Y12-16o10.q1k chr09 33 1180 70757 71915 F 1148 96.60 1473 accept 0 ALIGNMENT 760 Y12-16o11.q1k chr13 906 33 157892 158766 C 874 96.68 1265 accept 0 ALIGNMENT 0 Y12-16o11.q1k chr13 62 199 158547 158546 F 138 0.00 1265 reject_low 1 ALIGNMENT 0 Y12-16o11.q1k chr13 253 729 158599 158598 F 477 0.00 1265 reject_low 1 ALIGNMENT 26 Y12-16o11.q1k chr13 200 252 158547 158599 F 53 84.91 1265 reject_low 1 ALIGNMENT 975 Y12-16o11.p1k chr13 1 1182 153233 154416 F 1182 95.09 1387 accept 0 ALIGNMENT 0 Y12-16o12.p1k chr07 802 513 158960 158959 C 290 0.00 1393 reject_low 4 ALIGNMENT 0 Y12-16o12.p1k chr07 480 62 158991 158990 C 419 0.00 1393 reject_low 4 ALIGNMENT 998 Y12-16o12.p1k chr14 22 1269 343536 344791 F 1248 94.79 1393 accept 0 ALIGNMENT 0 Y12-16o12.p1k chr08 62 580 373149 373148 F 519 0.00 1393 reject_low 1 ALIGNMENT 0 Y12-16o12.p1k chr15 802 513 236232 236231 C 290 0.00 1393 reject_low 3 ALIGNMENT 21 Y12-16o12.p1k chr07 512 481 158959 158990 C 32 90.62 1393 reject_low 4 ALIGNMENT 24 Y12-16o12.p1k chr15 512 481 236231 236262 C 32 93.75 1393 reject_low 3 ALIGNMENT 21 Y12-16o12.p1k chr07 512 468 158905 158949 C 45 84.44 1393 reject_low 2 ALIGNMENT 0 Y12-16o12.p1k chr07 802 513 158906 158905 C 290 0.00 1393 reject_low 2 ALIGNMENT 0 Y12-16o12.p1k chr07 467 62 158950 158949 C 406 0.00 1393 reject_low 2 ALIGNMENT 1011 Y12-16o12.q1k chr14 1204 30 347131 348319 C 1175 96.85 1301 accept 0 ALIGNMENT 0 Y12-16o12.p1k chr15 802 501 235644 235643 C 302 0.00 1393 reject_low 5 ALIGNMENT 0 Y12-16o12.p1k chr15 480 62 236263 236262 C 419 0.00 1393 reject_low 3 ALIGNMENT 0 Y12-16o12.p1k chr15 477 62 235666 235665 C 416 0.00 1393 reject_low 5 ALIGNMENT 122 Y12-16o12.p1k chr08 581 978 373149 373550 F 398 78.14 1393 reject_low 1 ALIGNMENT 20 Y12-16o12.p1k chr15 500 478 235643 235665 C 23 100.00 1393 reject_low 5 ALIGNMENT 865 Y12-16o13.p1k chr10 22 1073 27484 28540 F 1052 95.15 1349 accept 0 ALIGNMENT 36 Y12-16o13.p1k chr04 929 637 1163163 1163454 C 293 71.67 1349 reject_low 2 ALIGNMENT 119 Y12-16o13.p1k chr04 929 54 1159814 1160688 C 876 72.83 1349 reject_low 1 ALIGNMENT 0 Y12-16o13.p1k chr04 636 524 1163455 1163567 C 113 0.00 1349 reject_low 2 ALIGNMENT 958 Y12-16o13.q1k chr10 1186 35 32661 33820 C 1152 96.27 1258 accept 0 ALIGNMENT 0 Y12-16o13.p1k chr04 414 62 1163677 1163676 C 353 0.00 1349 reject_low 2 ALIGNMENT 42 Y12-16o13.p1k chr04 523 415 1163568 1163676 C 109 80.73 1349 reject_low 2 ALIGNMENT 939 Y12-16o14.q1k chr04 36 1101 64190 65270 F 1066 97.37 1304 accept 0 ALIGNMENT 962 Y12-16o14.p1k chr04 1220 20 68516 69707 C 1201 95.25 1417 accept 0 ALIGNMENT 326 Y12-16o15.p1k chr07 373 13 817418 817780 C 361 99.17 1385 reject_low 7 ALIGNMENT 0 Y12-16o15.p1k chr01 801 402 160232 160231 C 400 0.00 1385 reject_low 20 ALIGNMENT 966 Y12-16o15.q1k chr07 1254 39 710789 712000 C 1216 94.49 1269 accept_trans 0 ALIGNMENT 961 Y12-16o15.q1k chr09 1214 39 208922 210095 C 1176 95.15 1269 reject_low 1 ALIGNMENT 252 Y12-16o15.p1k chr01 62 393 183136 183468 F 332 93.98 1385 reject_low 21 ALIGNMENT 0 Y12-16o15.p1k chr09 62 393 205285 205284 F 332 0.00 1385 reject_low 1 ALIGNMENT 0 Y12-16o15.p1k chr15 374 801 600714 600713 F 428 0.00 1385 reject_low 8 ALIGNMENT 0 Y12-16o15.p1k chr13 374 801 190063 190062 F 428 0.00 1385 reject_low 11 ALIGNMENT 326 Y12-16o15.p1k chr15 13 373 600352 600714 F 361 99.17 1385 reject_low 8 ALIGNMENT 313 Y12-16o15.p1k chr11 393 62 517095 517426 C 332 100.00 1385 reject_low 16 ALIGNMENT 0 Y12-16o15.p1k chr07 801 374 817419 817418 C 428 0.00 1385 reject_low 7 ALIGNMENT 0 Y12-16o15.p1k chr02 394 801 221373 221372 F 408 0.00 1385 reject_low 18 ALIGNMENT 0 Y12-16o15.p1k chr13 801 394 357005 357004 C 408 0.00 1385 reject_low 5 ALIGNMENT 350 Y12-16o15.p1k chr13 393 13 357004 357386 C 381 99.48 1385 reject_low 5 ALIGNMENT 0 Y12-16o15.p1k chr14 801 394 96611 96610 C 408 0.00 1385 reject_low 6 ALIGNMENT 262 Y12-16o15.p1k chr01 394 665 182682 182953 F 272 100.00 1385 reject_low 2 ALIGNMENT 589 Y12-16o15.p1k chr07 394 1135 707267 708010 F 742 94.34 1385 accept_trans 0 ALIGNMENT 352 Y12-16o15.p1k chr02 13 394 226573 226956 F 382 99.48 1385 reject_low 4 ALIGNMENT 0 Y12-16o15.p1k chr13 801 394 362587 362586 C 408 0.00 1385 reject_low 15 ALIGNMENT 292 Y12-16o15.p1k chr11 393 62 457783 458114 C 332 97.89 1385 reject_low 19 ALIGNMENT 367 Y12-16o15.p1k chr04 665 13 645235 645881 C 653 88.36 1385 reject_low 3 ALIGNMENT 0 Y12-16o15.p1k chr11 801 394 457784 457783 C 408 0.00 1385 reject_low 19 ALIGNMENT 341 Y12-16o15.p1k chr14 393 13 96610 96992 C 381 98.69 1385 reject_low 6 ALIGNMENT 249 Y12-16o15.p1k chr01 401 13 160231 160626 C 389 90.49 1385 reject_low 20 ALIGNMENT 0 Y12-16o15.p1k chr11 801 394 517096 517095 C 408 0.00 1385 reject_low 16 ALIGNMENT 314 Y12-16o15.p1k chr13 393 61 362586 362918 C 333 100.00 1385 reject_low 15 ALIGNMENT 0 Y12-16o15.p1k chr01 62 393 182682 182681 F 332 0.00 1385 reject_low 2 ALIGNMENT 0 Y12-16o15.p1k chr01 394 801 189751 189750 F 408 0.00 1385 reject_low 23 ALIGNMENT 0 Y12-16o15.p1k chr01 394 801 183468 183467 F 408 0.00 1385 reject_low 21 ALIGNMENT 0 Y12-16o15.p1k chr12 801 374 215102 215101 C 428 0.00 1385 reject_low 14 ALIGNMENT 0 Y12-16o15.p1k chr07 394 801 541689 541688 F 408 0.00 1385 reject_low 13 ALIGNMENT 0 Y12-16o15.p1k chr02 374 801 265472 265471 F 428 0.00 1385 reject_low 9 ALIGNMENT 310 Y12-16o15.p1k chr07 62 393 535215 535546 F 332 99.70 1385 reject_low 17 ALIGNMENT 315 Y12-16o15.p1k chr16 393 13 850625 851013 C 381 96.59 1385 reject_low 12 ALIGNMENT 0 Y12-16o15.p1k chr07 371 801 817387 817386 F 431 0.00 1385 reject_low 24 ALIGNMENT 0 Y12-16o15.p1k chr04 801 666 645236 645235 C 136 0.00 1385 reject_low 3 ALIGNMENT 0 Y12-16o15.p1k chr07 62 393 707267 707266 F 332 0.00 1385 accept_trans 0 ALIGNMENT 300 Y12-16o15.p1k chr02 62 393 221040 221373 F 332 98.80 1385 reject_low 18 ALIGNMENT 323 Y12-16o15.p1k chr08 373 13 543630 543992 C 361 98.89 1385 reject_low 10 ALIGNMENT 0 Y12-16o15.p1k chr01 801 394 165828 165827 C 408 0.00 1385 reject_low 22 ALIGNMENT 0 Y12-16o15.p1k chr16 801 394 850626 850625 C 408 0.00 1385 reject_low 12 ALIGNMENT 0 Y12-16o15.p1k chr02 395 801 226956 226955 F 407 0.00 1385 reject_low 4 ALIGNMENT 598 Y12-16o15.p1k chr09 394 1135 205285 206028 F 742 94.74 1385 reject_low 1 ALIGNMENT 0 Y12-16o15.p1k chr07 394 801 535546 535545 F 408 0.00 1385 reject_low 17 ALIGNMENT 210 Y12-16o15.p1k chr01 393 62 165827 166163 C 332 90.06 1385 reject_low 22 ALIGNMENT 57 Y12-16o15.p1k chr07 259 370 817278 817387 F 112 86.61 1385 reject_low 24 ALIGNMENT 105 Y12-16o15.p1k chr01 62 393 189420 189751 F 332 80.42 1385 reject_low 23 ALIGNMENT 312 Y12-16o15.p1k chr07 13 393 541301 541689 F 381 96.33 1385 reject_low 13 ALIGNMENT 0 Y12-16o15.p1k chr08 801 374 543631 543630 C 428 0.00 1385 reject_low 10 ALIGNMENT 323 Y12-16o15.p1k chr02 13 373 265110 265472 F 361 98.89 1385 reject_low 9 ALIGNMENT 297 Y12-16o15.p1k chr12 373 13 215101 215469 C 361 96.68 1385 reject_low 14 ALIGNMENT 0 Y12-16o15.p1k chr07 62 258 817278 817277 F 197 0.00 1385 reject_low 24 ALIGNMENT 0 Y12-16o15.p1k chr01 666 801 182953 182952 F 136 0.00 1385 reject_low 2 ALIGNMENT 323 Y12-16o15.p1k chr13 13 373 189701 190063 F 361 98.89 1385 reject_low 11 ALIGNMENT 941 Y12-16o16.p1k chr12 1 1116 652257 653376 F 1116 96.15 1321 reject_low 24 ALIGNMENT 980 Y12-16o16.q1k chr14 34 1194 96688 97846 F 1161 96.64 1333 reject_low 25 ALIGNMENT 0 Y12-16o16.q1k chr05 62 149 492691 492690 F 88 0.00 1333 reject_low 7 ALIGNMENT 1010 Y12-16o16.q1k chr13 34 1271 357082 358319 F 1238 95.72 1333 accept_trans 0 ALIGNMENT 962 Y12-16o16.p1k chr13 1116 1 376067 377186 C 1116 96.77 1321 reject_low 6 ALIGNMENT 953 Y12-16o16.p1k chr04 1116 1 881665 882784 C 1116 96.51 1321 reject_low 20 ALIGNMENT 806 Y12-16o16.q1k chr08 34 1167 543688 544818 F 1134 92.24 1333 reject_low 8 ALIGNMENT 956 Y12-16o16.p1k chr02 1 1116 261005 262124 F 1116 96.59 1321 reject_low 4 ALIGNMENT 1015 Y12-16o16.q1k chr02 1329 34 225580 226877 C 1296 94.60 1333 reject_low 16 ALIGNMENT 957 Y12-16o16.q1k chr10 1194 34 482644 483808 C 1161 96.04 1333 reject_low 1 ALIGNMENT 956 Y12-16o16.p1k chr07 1116 1 820763 821882 C 1116 96.59 1321 reject_low 3 ALIGNMENT 0 Y12-16o16.q1k chr03 859 237 149532 149531 C 623 0.00 1333 reject_low 33 ALIGNMENT 140 Y12-16o16.q1k chr01 34 287 165905 166163 F 254 87.80 1333 reject_low 31 ALIGNMENT 959 Y12-16o16.p1k chr04 1 1116 1097197 1098316 F 1116 96.68 1321 reject_low 11 ALIGNMENT 962 Y12-16o16.q1k chr02 1167 34 264284 265414 C 1134 96.83 1333 reject_low 4 ALIGNMENT 959 Y12-16o16.p1k chr13 1 1116 185599 186718 F 1116 96.68 1321 reject_low 9 ALIGNMENT 932 Y12-16o16.p1k chr16 1116 1 853996 855115 C 1116 95.88 1321 reject_low 12 ALIGNMENT 0 Y12-16o16.q1k chr03 288 859 143077 143076 F 572 0.00 1333 reject_low 30 ALIGNMENT 962 Y12-16o16.p1k chr16 1 1116 845843 846962 F 1116 96.77 1321 reject_low 10 ALIGNMENT 962 Y12-16o16.p1k chr16 1116 1 808008 809127 C 1116 96.77 1321 reject_low 17 ALIGNMENT 860 Y12-16o16.p1k chr13 1116 8 360369 361480 C 1109 93.87 1321 accept_trans 0 ALIGNMENT 941 Y12-16o16.p1k chr12 1116 1 479345 480464 C 1116 96.15 1321 reject_low 14 ALIGNMENT 232 Y12-16o16.q1k chr03 287 34 151518 151770 C 254 99.61 1333 reject_low 28 ALIGNMENT 956 Y12-16o16.p1k chr14 1 1116 520595 521714 F 1116 96.59 1321 reject_low 19 ALIGNMENT 644 Y12-16o16.q1k chr01 34 1167 160317 161452 F 1134 87.57 1333 reject_low 13 ALIGNMENT 216 Y12-16o16.q1k chr03 34 287 124209 124462 F 254 97.24 1333 reject_low 29 ALIGNMENT 959 Y12-16o16.p1k chr04 1116 1 990086 991205 C 1116 96.68 1321 reject_low 18 ALIGNMENT 965 Y12-16o16.q1k chr15 1167 34 599526 600656 C 1134 96.91 1333 reject_low 2 ALIGNMENT 806 Y12-16o16.q1k chr13 1167 34 188875 190005 C 1134 92.24 1333 reject_low 9 ALIGNMENT 34 Y12-16o16.q1k chr07 90 34 817278 817334 C 57 87.72 1333 reject_low 34 ALIGNMENT 780 Y12-16o16.q1k chr04 1167 34 1100473 1101609 C 1134 91.53 1333 reject_low 11 ALIGNMENT 955 Y12-16o16.p1k chr01 1116 1 163609 164729 C 1116 96.59 1321 reject_low 13 ALIGNMENT 931 Y12-16o16.q1k chr13 34 1167 372774 373910 F 1134 95.94 1333 reject_low 6 ALIGNMENT 843 Y12-16o16.q1k chr05 150 1167 492691 493705 F 1018 96.07 1333 reject_low 7 ALIGNMENT 0 Y12-16o16.q1k chr01 288 859 166163 166162 F 572 0.00 1333 reject_low 31 ALIGNMENT 28 Y12-16o16.q1k chr16 130 170 850353 850392 F 41 95.12 1333 reject_low 35 ALIGNMENT 963 Y12-16o16.q1k chr07 1194 34 540447 541611 C 1161 96.21 1333 reject_low 26 ALIGNMENT 941 Y12-16o16.p1k chr10 1 1116 473812 474931 F 1116 96.15 1321 reject_low 23 ALIGNMENT 204 Y12-16o16.q1k chr03 34 287 142824 143077 F 254 95.67 1333 reject_low 30 ALIGNMENT 941 Y12-16o16.p1k chr07 1116 1 565214 566333 C 1116 96.15 1321 reject_low 22 ALIGNMENT 0 Y12-16o16.q1k chr03 288 859 124462 124461 F 572 0.00 1333 reject_low 29 ALIGNMENT 75 Y12-16o16.q1k chr03 236 34 149531 149729 C 203 83.25 1333 reject_low 33 ALIGNMENT 0 Y12-16o16.q1k chr07 859 91 817279 817278 C 769 0.00 1333 reject_low 34 ALIGNMENT 0 Y12-16o16.q1k chr03 289 859 168929 168928 F 571 0.00 1333 reject_low 32 ALIGNMENT 0 Y12-16o16.q1k chr16 171 859 850392 850391 F 689 0.00 1333 reject_low 35 ALIGNMENT 965 Y12-16o16.q1k chr07 34 1167 817476 818606 F 1134 96.91 1333 reject_low 3 ALIGNMENT 941 Y12-16o16.p1k chr13 1 1116 197766 198885 F 1116 96.15 1321 reject_low 15 ALIGNMENT 962 Y12-16o16.p1k chr08 1116 1 546975 548094 C 1116 96.77 1321 reject_low 8 ALIGNMENT 959 Y12-16o16.p1k chr05 1116 1 495862 496981 C 1116 96.68 1321 reject_low 7 ALIGNMENT 959 Y12-16o16.p1k chr15 1 1116 596250 597369 F 1116 96.68 1321 reject_low 2 ALIGNMENT 720 Y12-16o16.q1k chr15 1167 34 122413 123549 C 1134 89.77 1333 reject_low 27 ALIGNMENT 962 Y12-16o16.p1k chr12 1116 1 218452 219571 C 1116 96.77 1321 reject_low 5 ALIGNMENT 931 Y12-16o16.q1k chr12 34 1167 215159 216295 F 1134 95.94 1333 reject_low 5 ALIGNMENT 0 Y12-16o16.q1k chr03 859 288 151519 151518 C 572 0.00 1333 reject_low 28 ALIGNMENT 786 Y12-16o16.q1k chr16 34 1167 850703 851839 F 1134 91.71 1333 reject_low 12 ALIGNMENT 944 Y12-16o16.p1k chr16 1 1116 57886 59005 F 1116 96.24 1321 reject_low 21 ALIGNMENT 82 Y12-16o16.q1k chr03 34 288 168673 168929 F 255 80.78 1333 reject_low 32 ALIGNMENT 780 Y12-16o16.q1k chr16 1167 34 849122 850258 C 1134 91.53 1333 reject_low 10 ALIGNMENT 647 Y12-16o16.q1k chr13 1167 34 201042 202177 C 1134 87.65 1333 reject_low 15 ALIGNMENT 0 Y12-16o16.q1k chr16 62 129 850353 850352 F 68 0.00 1333 reject_low 35 ALIGNMENT 647 Y12-16o16.q1k chr12 34 1167 476053 477188 F 1134 87.65 1333 reject_low 14 ALIGNMENT 962 Y12-16o16.p1k chr10 1 1116 479396 480515 F 1116 96.77 1321 reject_low 1 ALIGNMENT 934 Y12-16o17.q1k chr14 26 1160 322451 323574 F 1135 95.59 1258 accept 0 ALIGNMENT 794 Y12-16o17.p1k chr14 1043 4 327128 328164 C 1040 93.37 1262 accept 0 ALIGNMENT 840 Y12-16o18.q1k chr08 32 1103 486565 487623 F 1072 94.40 1359 accept 0 ALIGNMENT 423 Y12-16o18.p1k chr08 873 81 490878 491659 C 793 86.00 1466 accept 0 ALIGNMENT 0 Y12-16o19.p1k chr13 62 796 21960 21959 F 735 0.00 1348 reject_low 1 ALIGNMENT 911 Y12-16o19.p1k chr12 1209 4 881574 882759 C 1206 94.28 1348 accept 0 ALIGNMENT 20 Y12-16o19.p1k chr13 797 834 21960 21997 F 38 94.74 1348 reject_low 1 ALIGNMENT 993 Y12-16o19.q1k chr12 38 1231 878599 879800 F 1194 94.97 1234 accept 0 ALIGNMENT 803 Y12-16o20.p1k chr07 15 1021 312903 313903 F 1007 94.44 1317 accept 0 ALIGNMENT 968 Y12-16o20.q1k chr07 1197 35 316284 317459 C 1163 95.53 1273 accept 0 ALIGNMENT 1004 Y12-16o21.q1k chr13 35 1225 694063 695250 F 1191 96.22 1231 accept 0 ALIGNMENT 518 Y12-16o21.p1k chr13 860 11 698161 698996 C 850 89.06 1282 accept 0 ALIGNMENT 979 Y12-16o22.q1k chr07 35 1187 659052 660215 F 1153 96.79 1248 accept 0 ALIGNMENT 862 Y12-16o22.p1k chr07 1019 21 662024 663016 C 999 97.20 1409 accept 0 ALIGNMENT 968 Y12-16o23.p1k chr04 1205 18 68303 69497 C 1188 94.95 1307 accept 0 ALIGNMENT 956 Y12-16o23.q1k chr04 39 1146 63380 64496 F 1108 96.21 1167 accept 0 ALIGNMENT 808 Y12-16o24.p1k chr14 1162 20 358544 359708 C 1143 92.21 1284 accept 0 ALIGNMENT 999 Y12-16o24.q1k chr14 36 1232 354692 355877 F 1197 95.66 1249 accept 0 ALIGNMENT 998 Y12-16p01.q1k chr12 36 1218 184899 186097 F 1183 96.28 1306 accept 0 ALIGNMENT 962 Y12-16p01.p1k chr12 1218 20 188449 189656 C 1199 95.33 1346 accept 0 ALIGNMENT 0 Y12-16p02.p1k chr03 741 819 121890 121889 F 79 0.00 1377 reject_low 1 ALIGNMENT 801 Y12-16p02.q1k chr15 37 1087 121393 122444 F 1051 93.43 1287 ambiguous_trans 22 ALIGNMENT 946 Y12-16p02.q1k chr14 1135 36 97734 98839 C 1100 96.82 1287 ambiguous_trans 5 ALIGNMENT 198 Y12-16p02.p1k chr03 73 740 121223 121890 F 668 77.69 1377 reject_low 1 ALIGNMENT 799 Y12-16p02.q1k chr10 37 1135 476068 477172 F 1099 92.54 1287 ambiguous_trans 20 ALIGNMENT 799 Y12-16p02.q1k chr16 37 1076 60142 61181 F 1040 93.56 1287 ambiguous_trans 24 ALIGNMENT 826 Y12-16p02.q1k chr16 1135 37 851755 852859 C 1099 93.27 1287 ambiguous_trans 15 ALIGNMENT 823 Y12-16p02.q1k chr16 37 1135 848102 849206 F 1099 93.27 1287 ambiguous_trans 17 ALIGNMENT 980 Y12-16p02.q1k chr13 1159 36 358098 359233 C 1124 97.33 1287 ambiguous_trans 3 ALIGNMENT 919 Y12-16p02.q1k chr04 37 1135 1210381 1211485 F 1099 96.00 1287 ambiguous_trans 9 ALIGNMENT 970 Y12-16p02.p1k chr14 23 1168 629852 630983 F 1146 96.60 1377 accept 0 ALIGNMENT 848 Y12-16p02.q1k chr08 1135 36 544734 545839 C 1100 93.91 1287 ambiguous_trans 14 ALIGNMENT 822 Y12-16p02.q1k chr05 1135 37 444522 445626 C 1099 93.08 1287 ambiguous_trans 18 ALIGNMENT 890 Y12-16p02.q1k chr07 1135 36 818522 819627 C 1100 95.09 1287 ambiguous_trans 12 ALIGNMENT 980 Y12-16p02.q1k chr02 36 1159 224726 225861 F 1124 97.33 1287 ambiguous_trans 2 ALIGNMENT 936 Y12-16p02.q1k chr10 37 1135 481652 482756 F 1099 96.54 1287 ambiguous_trans 6 ALIGNMENT 823 Y12-16p02.q1k chr13 37 1135 187855 188959 F 1099 93.27 1287 ambiguous_trans 16 ALIGNMENT 905 Y12-16p02.q1k chr02 36 1135 263263 264368 F 1100 95.55 1287 ambiguous_trans 11 ALIGNMENT 919 Y12-16p02.q1k chr04 1135 37 987845 988949 C 1099 96.00 1287 ambiguous_trans 8 ALIGNMENT 812 Y12-16p02.q1k chr14 36 1066 522832 523863 F 1031 94.28 1287 ambiguous_trans 21 ALIGNMENT 919 Y12-16p02.q1k chr12 37 1135 654515 655619 F 1099 96.00 1287 ambiguous_trans 10 ALIGNMENT 800 Y12-16p02.q1k chr12 1082 37 477162 478208 C 1046 93.50 1287 ambiguous_trans 23 ALIGNMENT 827 Y12-16p02.q1k chr05 1087 36 493674 494726 C 1052 94.30 1287 ambiguous_trans 19 ALIGNMENT 797 Y12-16p02.q1k chr13 37 1082 200022 201068 F 1046 93.40 1287 ambiguous_trans 25 ALIGNMENT 761 Y12-16p02.q1k chr16 1076 37 805832 806871 C 1040 92.40 1287 ambiguous_trans 26 ALIGNMENT 829 Y12-16p02.q1k chr13 1159 37 373796 374930 C 1123 93.05 1287 ambiguous_trans 7 ALIGNMENT 940 Y12-16p02.q1k chr07 37 1159 539455 540589 F 1123 96.17 1287 ambiguous_trans 4 ALIGNMENT 880 Y12-16p02.q1k chr15 37 1135 598506 599610 F 1099 94.81 1287 ambiguous_trans 13 ALIGNMENT 989 Y12-16p03.q1k chr12 1277 29 333538 334781 C 1249 94.00 1316 accept 0 ALIGNMENT 812 Y12-16p03.p1k chr12 5 996 330553 331550 F 992 95.36 1236 accept 0 ALIGNMENT 669 Y12-16p05.p1k chr07 1073 22 1062694 1063741 C 1052 89.83 1383 accept 0 ALIGNMENT 845 Y12-16p05.q1k chr07 36 1127 1058328 1059416 F 1092 93.59 1351 accept 0 ALIGNMENT 909 Y12-16p06.p1k chr13 17 1122 101598 102684 F 1106 95.75 1419 accept 0 ALIGNMENT 967 Y12-16p06.q1k chr13 1099 33 104061 105140 C 1067 97.84 1282 accept 0 ALIGNMENT 905 Y12-16p07.p1k chr05 1082 16 29549 30600 C 1067 97.19 1499 accept 0 ALIGNMENT 990 Y12-16p07.q1k chr05 33 1214 24664 25848 F 1182 95.43 1355 accept 0 ALIGNMENT 955 Y12-16p08.q1k chr04 1198 35 581127 582304 C 1164 95.45 1324 accept_chi 0 ALIGNMENT 840 Y12-16p08.p1k chr16 1221 18 583568 584753 C 1204 92.19 1395 accept_chi 1 ALIGNMENT 832 Y12-16p09.p1k chr16 932 8 829698 830617 C 925 98.38 1300 accept 0 ALIGNMENT 979 Y12-16p09.q1k chr16 36 1183 826288 827447 F 1148 96.25 1449 accept 0 ALIGNMENT 674 Y12-16p10.q1k chr12 33 1045 460069 461121 F 1013 90.52 1466 accept 0 ALIGNMENT 547 Y12-16p10.p1k chr12 921 97 454814 455623 C 825 90.42 1422 reject_low 1 ALIGNMENT 364 Y12-16p10.q1k chr12 505 1045 451419 451984 F 541 90.20 1466 reject_low 1 ALIGNMENT 0 Y12-16p10.q1k chr12 62 857 489759 489758 F 796 0.00 1466 reject_low 2 ALIGNMENT 117 Y12-16p10.q1k chr12 858 1045 489759 489952 F 188 88.83 1466 reject_low 2 ALIGNMENT 0 Y12-16p10.q1k chr12 62 504 451419 451418 F 443 0.00 1466 reject_low 1 ALIGNMENT 596 Y12-16p10.p1k chr12 1206 97 463660 464760 C 1110 86.58 1422 accept 0 ALIGNMENT 0 Y12-16p11.q1k chr15 90 814 678383 678382 F 725 0.00 1348 reject_low 1 ALIGNMENT 48 Y12-16p11.q1k chr15 36 89 678330 678383 F 54 96.30 1348 reject_low 1 ALIGNMENT 911 Y12-16p11.p1k chr12 1095 1 715971 717073 C 1095 96.26 1340 accept 0 ALIGNMENT 954 Y12-16p11.q1k chr12 33 1184 712675 713826 F 1152 95.92 1348 accept 0 ALIGNMENT 1031 Y12-16p12.q1k chr15 1315 34 537625 538914 C 1282 95.16 1324 accept 0 ALIGNMENT 932 Y12-16p12.p1k chr15 12 1179 534753 535901 F 1168 95.55 1429 accept 0 ALIGNMENT 885 Y12-16p13.p1k chr16 1185 25 283473 284625 C 1161 94.32 1435 accept 0 ALIGNMENT 940 Y12-16p13.q1k chr16 37 1066 279918 280940 F 1030 98.16 1414 accept 0 ALIGNMENT 1017 Y12-16p14.q1k chr04 1251 37 1315763 1316990 C 1215 95.47 1320 accept 0 ALIGNMENT 766 Y12-16p14.p1k chr04 2 988 1312961 1313955 F 987 94.33 1230 accept 0 ALIGNMENT 882 Y12-16p15.p1k chr15 1011 5 762162 763157 C 1007 96.92 1299 accept 0 ALIGNMENT 971 Y12-16p15.q1k chr15 39 1207 759045 760209 F 1169 95.64 1330 accept 0 ALIGNMENT 812 Y12-16p16.p1k chr04 4 1004 1035092 1036116 F 1001 95.40 1301 accept 0 ALIGNMENT 972 Y12-16p16.q1k chr04 1237 31 1040048 1041261 C 1207 94.70 1326 accept 0 ALIGNMENT 989 Y12-16p17.p1k chr02 10 1279 704887 706160 F 1270 93.70 1363 accept 0 ALIGNMENT 0 Y12-16p17.q1k chr15 575 916 886329 886328 F 342 0.00 1317 reject_low 1 ALIGNMENT 1033 Y12-16p17.q1k chr02 1289 37 708948 710217 C 1253 95.37 1317 accept 0 ALIGNMENT 0 Y12-16p17.q1k chr15 62 125 885881 885880 F 64 0.00 1317 reject_low 1 ALIGNMENT 113 Y12-16p17.q1k chr15 126 574 885881 886329 F 449 75.72 1317 reject_low 1 ALIGNMENT 28 Y12-16p18.q1k chr08 818 778 169172 169212 C 41 97.56 1335 reject_low 3 ALIGNMENT 0 Y12-16p18.q1k chr04 62 777 747513 747512 F 716 0.00 1335 reject_low 4 ALIGNMENT 805 Y12-16p18.p1k chr16 1107 28 119574 120641 C 1080 93.80 1392 accept 0 ALIGNMENT 0 Y12-16p18.q1k chr04 777 62 923099 923098 C 716 0.00 1335 reject_low 2 ALIGNMENT 0 Y12-16p18.q1k chr04 819 860 747553 747552 F 42 0.00 1335 reject_low 4 ALIGNMENT 0 Y12-16p18.q1k chr08 860 819 169173 169172 C 42 0.00 1335 reject_low 3 ALIGNMENT 926 Y12-16p18.q1k chr16 32 1228 116437 117616 F 1197 94.49 1335 accept 0 ALIGNMENT 0 Y12-16p18.q1k chr02 834 860 780447 780446 F 27 0.00 1335 reject_low 1 ALIGNMENT 22 Y12-16p18.q1k chr04 778 818 747513 747553 F 41 92.68 1335 reject_low 4 ALIGNMENT 24 Y12-16p18.q1k chr04 833 778 923043 923098 C 56 87.50 1335 reject_low 2 ALIGNMENT 27 Y12-16p18.q1k chr02 778 833 780392 780447 F 56 89.29 1335 reject_low 1 ALIGNMENT 0 Y12-16p18.q1k chr02 62 777 780392 780391 F 716 0.00 1335 reject_low 1 ALIGNMENT 0 Y12-16p18.q1k chr08 777 62 169213 169212 C 716 0.00 1335 reject_low 3 ALIGNMENT 0 Y12-16p18.q1k chr04 860 834 923044 923043 C 27 0.00 1335 reject_low 2 ALIGNMENT 1015 Y12-16p19.q1k chr14 34 1265 21620 22847 F 1232 94.97 1292 accept 0 ALIGNMENT 887 Y12-16p19.p1k chr14 1171 1 24236 25392 C 1171 93.77 1324 accept 0 ALIGNMENT 852 Y12-16p20.p1k chr13 3 1008 266981 267969 F 1006 97.02 1335 accept 0 ALIGNMENT 0 Y12-16p20.p1k chr13 1009 1031 267970 268000 F 23 0.00 1335 accept 0 ALIGNMENT 1038 Y12-16p20.q1k chr13 1185 36 270898 272055 C 1150 98.00 1288 accept 0 ALIGNMENT 20 Y12-16p20.p1k chr13 1032 1119 268001 268082 F 88 82.95 1335 accept 0 ALIGNMENT 972 Y12-16p21.q1k chr01 40 1205 150797 151957 F 1166 96.48 1275 accept 0 ALIGNMENT 715 Y12-16p21.p1k chr01 957 3 156123 157072 C 955 93.82 1159 accept 0 ALIGNMENT 0 Y12-16p22.q1k chr13 897 62 362723 362722 C 836 0.00 1288 reject_low 8 ALIGNMENT 0 Y12-16p22.q1k chr07 62 897 402157 402156 F 836 0.00 1288 reject_low 9 ALIGNMENT 0 Y12-16p22.q1k chr02 62 897 265356 265355 F 836 0.00 1288 reject_low 20 ALIGNMENT 0 Y12-16p22.q1k chr01 897 62 165964 165963 C 836 0.00 1288 reject_low 4 ALIGNMENT 0 Y12-16p22.q1k chr13 861 85 362594 362593 C 777 0.00 1288 reject_low 30 ALIGNMENT 79 Y12-16p22.q1k chr03 898 1032 82899 83032 F 135 89.63 1288 reject_low 5 ALIGNMENT 0 Y12-16p22.q1k chr14 62 895 519359 519358 F 834 0.00 1288 reject_low 12 ALIGNMENT 0 Y12-16p22.q1k chr07 861 72 817419 817418 C 790 0.00 1288 reject_low 36 ALIGNMENT 0 Y12-16p22.q1k chr08 861 72 549327 549326 C 790 0.00 1288 reject_low 37 ALIGNMENT 73 Y12-16p22.q1k chr13 1032 898 362589 362722 C 135 88.15 1288 reject_low 8 ALIGNMENT 0 Y12-16p22.q1k chr01 861 85 160247 160246 C 777 0.00 1288 reject_low 21 ALIGNMENT 0 Y12-16p22.q1k chr07 62 897 876147 876146 F 836 0.00 1288 reject_low 11 ALIGNMENT 0 Y12-16p22.q1k chr07 69 861 817387 817386 F 793 0.00 1288 reject_low 17 ALIGNMENT 0 Y12-16p22.q1k chr01 897 85 160376 165833 C 813 0.00 1288 reject_low 42 ALIGNMENT 49 Y12-16p22.q1k chr05 38 91 62421 62474 F 54 100.00 1288 reject_low 1 ALIGNMENT 20 Y12-16p22.q1k chr16 42 71 844696 844725 F 30 93.33 1288 reject_low 46 ALIGNMENT 64 Y12-16p22.q1k chr08 1015 898 549326 549442 C 118 88.14 1288 reject_low 19 ALIGNMENT 28 Y12-16p22.q1k chr01 42 84 183419 183461 F 43 93.02 1288 reject_low 44 ALIGNMENT 28 Y12-16p22.q1k chr03 84 42 83061 83103 C 43 93.02 1288 reject_low 23 ALIGNMENT 0 Y12-16p22.q1k chr07 897 72 817535 822999 C 826 0.00 1288 reject_low 45 ALIGNMENT 79 Y12-16p22.q1k chr01 1032 898 160242 160375 C 135 89.63 1288 reject_low 42 ALIGNMENT 0 Y12-16p22.q1k chr07 897 62 823117 823116 C 836 0.00 1288 reject_low 13 ALIGNMENT 0 Y12-16p22.q1k chr12 901 62 818206 818205 C 840 0.00 1288 reject_low 10 ALIGNMENT 33 Y12-16p22.q1k chr01 896 1042 189615 189760 F 147 79.59 1288 reject_low 44 ALIGNMENT 66 Y12-16p22.q1k chr16 898 1015 850200 850316 F 118 88.98 1288 reject_low 46 ALIGNMENT 54 Y12-16p22.q1k chr01 898 1032 183331 183465 F 135 83.70 1288 reject_low 28 ALIGNMENT 22 Y12-16p22.q1k chr07 42 84 931973 932015 F 43 88.37 1288 reject_low 31 ALIGNMENT 28 Y12-16p22.q1k chr03 42 84 82986 83028 F 43 93.02 1288 reject_low 22 ALIGNMENT 0 Y12-16p22.q1k chr01 85 861 189744 189743 F 777 0.00 1288 reject_low 3 ALIGNMENT 0 Y12-16p22.q1k chr14 85 895 519491 524924 F 811 0.00 1288 reject_low 43 ALIGNMENT 63 Y12-16p22.q1k chr02 898 1015 265356 265472 F 118 88.14 1288 reject_low 20 ALIGNMENT 0 Y12-16p22.q1k chr07 85 861 932015 932014 F 777 0.00 1288 reject_low 31 ALIGNMENT 67 Y12-16p22.q1k chr07 1015 898 823000 823116 C 118 88.98 1288 reject_low 13 ALIGNMENT 28 Y12-16p22.q1k chr16 42 84 56739 56781 F 43 93.02 1288 reject_low 27 ALIGNMENT 28 Y12-16p22.q1k chr14 42 84 525014 525056 F 43 93.02 1288 reject_low 26 ALIGNMENT 69 Y12-16p22.q1k chr07 898 1029 876147 876278 F 132 87.88 1288 reject_low 11 ALIGNMENT 79 Y12-16p22.q1k chr01 1032 898 165830 165963 C 135 89.63 1288 reject_low 4 ALIGNMENT 20 Y12-16p22.q1k chr15 42 71 117990 118019 F 30 93.33 1288 reject_low 39 ALIGNMENT 67 Y12-16p22.q1k chr07 1015 898 817418 817534 C 118 88.98 1288 reject_low 45 ALIGNMENT 28 Y12-16p22.q1k chr12 84 42 818080 818122 C 43 93.02 1288 reject_low 25 ALIGNMENT 20 Y12-16p22.q1k chr13 71 42 378304 378333 C 30 93.33 1288 reject_low 38 ALIGNMENT 28 Y12-16p22.q1k chr01 84 42 165834 165876 C 43 93.02 1288 reject_low 42 ALIGNMENT 66 Y12-16p22.q1k chr15 898 1015 117903 118019 F 118 88.98 1288 reject_low 15 ALIGNMENT 0 Y12-16p22.q1k chr16 62 897 844609 844608 F 836 0.00 1288 reject_low 16 ALIGNMENT 0 Y12-16p22.q1k chr13 861 72 378305 378304 C 790 0.00 1288 reject_low 38 ALIGNMENT 0 Y12-16p22.q1k chr01 62 897 183331 183330 F 836 0.00 1288 reject_low 28 ALIGNMENT 67 Y12-16p22.q1k chr13 1015 898 378304 378420 C 118 88.98 1288 reject_low 14 ALIGNMENT 0 Y12-16p22.q1k chr08 897 62 549443 549442 C 836 0.00 1288 reject_low 19 ALIGNMENT 0 Y12-16p22.q1k chr08 861 92 389181 389180 C 770 0.00 1288 reject_low 2 ALIGNMENT 40 Y12-16p22.q1k chr01 38 84 189698 189744 F 47 97.87 1288 reject_low 3 ALIGNMENT 0 Y12-16p22.q1k chr07 85 861 402286 402285 F 777 0.00 1288 reject_low 24 ALIGNMENT 20 Y12-16p22.q1k chr16 42 71 850287 850316 F 30 93.33 1288 reject_low 40 ALIGNMENT 27 Y12-16p22.q1k chr07 896 1009 817274 817383 F 114 78.95 1288 reject_low 41 ALIGNMENT 28 Y12-16p22.q1k chr01 84 42 160246 160288 C 43 93.02 1288 reject_low 21 ALIGNMENT 0 Y12-16p22.q1k chr01 85 895 183462 189614 F 811 0.00 1288 reject_low 44 ALIGNMENT 0 Y12-16p22.q1k chr14 85 861 525056 525055 F 777 0.00 1288 reject_low 26 ALIGNMENT 62 Y12-16p22.q1k chr14 896 1032 519359 519494 F 137 85.40 1288 reject_low 12 ALIGNMENT 27 Y12-16p22.q1k chr07 42 84 876234 876277 F 43 93.02 1288 reject_low 29 ALIGNMENT 64 Y12-16p22.q1k chr05 1015 898 498099 498215 C 118 88.14 1288 reject_low 18 ALIGNMENT 0 Y12-16p22.q1k chr16 72 861 850316 850315 F 790 0.00 1288 reject_low 40 ALIGNMENT 0 Y12-16p22.q1k chr03 85 861 83028 83027 F 777 0.00 1288 reject_low 22 ALIGNMENT 0 Y12-16p22.q1k chr05 861 72 498100 498099 C 790 0.00 1288 reject_low 35 ALIGNMENT 73 Y12-16p22.q1k chr07 898 1032 931886 932019 F 135 88.15 1288 reject_low 7 ALIGNMENT 0 Y12-16p22.q1k chr03 62 897 82899 82898 F 836 0.00 1288 reject_low 5 ALIGNMENT 20 Y12-16p22.q1k chr08 71 42 549326 549355 C 30 93.33 1288 reject_low 37 ALIGNMENT 20 Y12-16p22.q1k chr02 42 71 265443 265472 F 30 93.33 1288 reject_low 34 ALIGNMENT 42 Y12-16p22.q1k chr05 896 1028 62337 62467 F 133 81.20 1288 reject_low 32 ALIGNMENT 852 Y12-16p22.q1k chr03 1053 92 83036 83998 C 962 97.09 1288 accept 0 ALIGNMENT 855 Y12-16p22.p1k chr03 14 1066 77840 78874 F 1053 95.35 1354 accept 0 ALIGNMENT 0 Y12-16p22.q1k chr12 861 85 818081 818080 C 777 0.00 1288 reject_low 25 ALIGNMENT 0 Y12-16p22.q1k chr07 62 897 931886 931885 F 836 0.00 1288 reject_low 7 ALIGNMENT 79 Y12-16p22.q1k chr16 898 1032 56652 56785 F 135 89.63 1288 reject_low 6 ALIGNMENT 42 Y12-16p22.q1k chr08 1028 896 389187 389317 C 133 81.20 1288 reject_low 33 ALIGNMENT 0 Y12-16p22.q1k chr02 72 861 265472 265471 F 790 0.00 1288 reject_low 34 ALIGNMENT 28 Y12-16p22.q1k chr14 42 84 519448 519490 F 43 93.02 1288 reject_low 43 ALIGNMENT 66 Y12-16p22.q1k chr16 898 1015 844609 844725 F 118 88.98 1288 reject_low 16 ALIGNMENT 25 Y12-16p22.q1k chr13 84 42 362593 362635 C 43 90.70 1288 reject_low 30 ALIGNMENT 62 Y12-16p22.q1k chr14 896 1032 524925 525060 F 137 85.40 1288 reject_low 43 ALIGNMENT 20 Y12-16p22.q1k chr07 71 42 823000 823029 C 30 93.33 1288 reject_low 45 ALIGNMENT 0 Y12-16p22.q1k chr05 897 62 498216 498215 C 836 0.00 1288 reject_low 18 ALIGNMENT 0 Y12-16p22.q1k chr03 861 85 83062 83061 C 777 0.00 1288 reject_low 23 ALIGNMENT 28 Y12-16p22.q1k chr07 42 84 402244 402286 F 43 93.02 1288 reject_low 24 ALIGNMENT 0 Y12-16p22.q1k chr15 62 897 117903 117902 F 836 0.00 1288 reject_low 15 ALIGNMENT 70 Y12-16p22.q1k chr07 898 1032 402157 402290 F 135 87.41 1288 reject_low 9 ALIGNMENT 49 Y12-16p22.q1k chr08 91 38 389180 389233 C 54 100.00 1288 reject_low 2 ALIGNMENT 0 Y12-16p22.q1k chr07 62 895 817274 817273 F 834 0.00 1288 reject_low 41 ALIGNMENT 0 Y12-16p22.q1k chr15 72 861 118019 118018 F 790 0.00 1288 reject_low 39 ALIGNMENT 0 Y12-16p22.q1k chr05 92 861 62474 62473 F 770 0.00 1288 reject_low 1 ALIGNMENT 0 Y12-16p22.q1k chr13 897 62 378421 378420 C 836 0.00 1288 reject_low 14 ALIGNMENT 20 Y12-16p22.q1k chr07 71 42 817418 817447 C 30 93.33 1288 reject_low 36 ALIGNMENT 0 Y12-16p22.q1k chr07 85 861 876277 876276 F 777 0.00 1288 reject_low 29 ALIGNMENT 69 Y12-16p22.q1k chr12 1032 902 818076 818205 C 131 87.79 1288 reject_low 10 ALIGNMENT 20 Y12-16p22.q1k chr05 71 42 498099 498128 C 30 93.33 1288 reject_low 35 ALIGNMENT 0 Y12-16p22.q1k chr03 91 62 83999 83998 C 30 0.00 1288 accept 0 ALIGNMENT 0 Y12-16p22.q1k chr05 62 895 62337 62336 F 834 0.00 1288 reject_low 32 ALIGNMENT 29 Y12-16p22.q1k chr07 38 68 817357 817387 F 31 100.00 1288 reject_low 17 ALIGNMENT 0 Y12-16p22.q1k chr16 62 897 56652 56651 F 836 0.00 1288 reject_low 6 ALIGNMENT 0 Y12-16p22.q1k chr16 72 897 844726 850199 F 826 0.00 1288 reject_low 46 ALIGNMENT 0 Y12-16p22.q1k chr08 895 62 389318 389317 C 834 0.00 1288 reject_low 33 ALIGNMENT 0 Y12-16p22.q1k chr16 85 861 56781 56780 F 777 0.00 1288 reject_low 27 ALIGNMENT 971 Y12-16p23.p1k chr15 1204 17 282921 284094 C 1188 95.29 1325 accept 0 ALIGNMENT 1012 Y12-16p23.q1k chr15 39 1246 278773 279992 F 1208 95.36 1252 accept 0 ALIGNMENT 987 Y12-16p24.p1k chr12 1277 20 756347 757596 C 1258 94.36 1296 accept 0 ALIGNMENT 1047 Y12-16p24.q1k chr12 36 1243 752124 753329 F 1208 96.61 1251 accept 0 ALIGNMENT 882 Y12-17a01.q1k chr05 1018 34 264896 265889 C 985 97.56 1271 accept 0 ALIGNMENT 958 Y12-17a01.p1k chr05 15 1149 261694 262842 F 1135 96.12 1270 accept 0 ALIGNMENT 311 Y12-17a02.q1k chr04 357 1 1103659 1104014 C 357 97.76 1316 accept_trans 0 ALIGNMENT 961 Y12-17a02.p1k chr04 18 1149 1093488 1094634 F 1132 96.73 1306 accept_trans 0 ALIGNMENT 508 Y12-17a03.p1k chr09 21 563 213092 213634 F 543 98.53 1378 accept 0 ALIGNMENT 642 Y12-17a03.q1k chr09 812 34 218000 218774 C 779 95.51 1298 accept 0 ALIGNMENT 1007 Y12-17a04.p1k chr10 1238 15 168034 169241 C 1224 95.42 1261 accept 0 ALIGNMENT 393 Y12-17a04.q1k chr10 34 460 164362 164787 F 427 99.30 1321 accept 0 ALIGNMENT 1060 Y12-17a05.p1k chr14 20 1298 206433 207716 F 1279 95.62 1298 accept 0 ALIGNMENT 704 Y12-17a05.q1k chr14 863 31 209882 210716 C 833 95.68 1318 accept 0 ALIGNMENT 0 Y12-17a06.q1k chr14 466 805 605758 605757 F 340 0.00 1303 reject_low 3 ALIGNMENT 0 Y12-17a06.q1k chr07 805 466 531844 531843 C 340 0.00 1303 reject_low 2 ALIGNMENT 907 Y12-17a06.p1k chr04 12 1133 1427651 1428752 F 1122 95.37 1387 accept 0 ALIGNMENT 0 Y12-17a06.q1k chr13 469 805 239396 239395 F 337 0.00 1303 reject_low 1 ALIGNMENT 21 Y12-17a06.q1k chr14 429 465 605722 605758 F 37 97.30 1303 reject_low 3 ALIGNMENT 0 Y12-17a06.q1k chr07 428 62 531880 531879 C 367 0.00 1303 reject_low 2 ALIGNMENT 26 Y12-17a06.q1k chr13 426 468 239354 239396 F 43 97.67 1303 reject_low 1 ALIGNMENT 0 Y12-17a06.q1k chr13 62 425 239354 239353 F 364 0.00 1303 reject_low 1 ALIGNMENT 0 Y12-17a06.q1k chr14 62 428 605722 605721 F 367 0.00 1303 reject_low 3 ALIGNMENT 898 Y12-17a06.q1k chr04 1132 28 1431253 1432341 C 1105 95.38 1303 accept 0 ALIGNMENT 21 Y12-17a06.q1k chr07 465 429 531843 531879 C 37 97.30 1303 reject_low 2 ALIGNMENT 748 Y12-17a07.q1k chr04 935 30 1143740 1144639 C 906 95.81 1400 accept 0 ALIGNMENT 978 Y12-17a07.p1k chr04 27 1178 1139790 1140963 F 1152 96.09 1297 accept 0 ALIGNMENT 0 Y12-17a08.p1k chr02 62 372 627297 627296 F 311 0.00 1349 reject_low 2 ALIGNMENT 681 Y12-17a08.q1k chr08 753 13 248720 249457 C 741 98.38 1310 accept_chi 1 ALIGNMENT 0 Y12-17a08.p1k chr02 433 826 627356 627355 F 394 0.00 1349 reject_low 2 ALIGNMENT 40 Y12-17a08.p1k chr02 373 432 627297 627356 F 60 91.67 1349 reject_low 2 ALIGNMENT 1031 Y12-17a08.p1k chr07 1217 20 118188 119390 C 1198 96.58 1349 accept_chi 0 ALIGNMENT 427 Y12-17a09.p1k chr10 517 13 254084 254586 C 505 96.83 1490 accept 0 ALIGNMENT 809 Y12-17a09.q1k chr10 30 936 249926 250834 F 907 97.35 1308 accept 0 ALIGNMENT 779 Y12-17a10.q1k chr13 849 24 279017 279844 C 826 98.55 1444 accept 0 ALIGNMENT 0 Y12-17a10.q1k chr13 726 683 282095 282094 C 44 0.00 1444 reject_low 1 ALIGNMENT 150 Y12-17a10.q1k chr13 682 348 282094 282428 C 335 82.09 1444 reject_low 1 ALIGNMENT 996 Y12-17a10.p1k chr13 14 1209 274791 276005 F 1196 96.40 1296 accept 0 ALIGNMENT 0 Y12-17a10.q1k chr13 347 62 282429 282428 C 286 0.00 1444 reject_low 1 ALIGNMENT 610 Y12-17a12.q1k chr12 699 7 417214 417901 C 693 96.54 1398 accept 0 ALIGNMENT 482 Y12-17a12.p1k chr12 36 688 413524 414171 F 653 93.57 1457 accept 0 ALIGNMENT 968 Y12-17a15.p1k chr06 49 1184 66693 67827 F 1136 95.86 1222 accept 0 ALIGNMENT 767 Y12-17a15.q1k chr06 912 37 69976 70840 C 876 97.60 1388 accept 0 ALIGNMENT 991 Y12-17a16.q1k chr12 29 1187 152281 153441 F 1159 96.46 1253 accept 0 ALIGNMENT 1016 Y12-17a16.p1k chr12 1237 14 154050 155276 C 1224 95.83 1258 accept 0 ALIGNMENT 971 Y12-17a17.p1k chr05 1140 17 421172 422297 C 1124 96.53 1261 accept 0 ALIGNMENT 789 Y12-17a17.q1k chr05 29 938 416364 417272 F 910 97.03 1271 accept 0 ALIGNMENT 991 Y12-17a18.p1k chr13 21 1194 422234 423422 F 1174 95.83 1259 accept 0 ALIGNMENT 831 Y12-17a18.q1k chr13 1056 29 425572 426587 C 1028 95.82 1314 accept 0 ALIGNMENT 822 Y12-17a19.q1k chr04 32 964 442660 443583 F 933 97.43 1309 accept 0 ALIGNMENT 990 Y12-17a19.p1k chr04 1168 19 446136 447281 C 1150 96.96 1185 accept 0 ALIGNMENT 487 Y12-17a20.p1k chr13 684 15 26478 27146 C 670 92.84 1312 accept 0 ALIGNMENT 537 Y12-17a20.q1k chr13 34 700 21312 21975 F 667 94.60 1328 accept 0 ALIGNMENT 573 Y12-17a22.q1k chr12 718 34 544046 544727 C 685 95.62 1370 accept 0 ALIGNMENT 900 Y12-17a22.p1k chr12 17 1109 540636 541721 F 1093 94.97 1194 accept 0 ALIGNMENT 895 Y12-17a23.p1k chr09 20 1057 351880 352912 F 1038 96.92 1171 accept 0 ALIGNMENT 0 Y12-17a23.q1k chr09 842 404 357043 357042 C 439 0.00 1200 reject_low 1 ALIGNMENT 0 Y12-17a23.q1k chr09 397 62 357139 357138 C 336 0.00 1200 accept 0 ALIGNMENT 607 Y12-17a23.q1k chr09 1193 398 356357 357138 C 796 94.10 1200 accept 0 ALIGNMENT 335 Y12-17a23.q1k chr09 403 34 357042 357411 C 370 98.65 1200 reject_low 1 ALIGNMENT 943 Y12-17a24.p1k chr15 1099 16 570470 571544 C 1084 97.14 1202 accept 0 ALIGNMENT 931 Y12-17a24.q1k chr15 34 1165 566089 567212 F 1132 95.67 1176 accept 0 ALIGNMENT 915 Y12-17b01.p1k chr11 15 1130 69474 70611 F 1116 94.89 1293 accept 0 ALIGNMENT 954 Y12-17b01.q1k chr11 1159 39 73389 74519 C 1121 95.90 1340 accept 0 ALIGNMENT 0 Y12-17b02.p1k chr13 202 87 278295 278410 C 116 0.00 1311 reject_low 1 ALIGNMENT 153 Y12-17b02.p1k chr13 569 203 277928 278294 C 367 81.20 1311 reject_low 1 ALIGNMENT 1021 Y12-17b02.q1k chr13 27 1242 277250 278478 F 1216 95.72 1327 accept 0 ALIGNMENT 0 Y12-17b02.p1k chr13 833 570 277929 277928 C 264 0.00 1311 reject_low 1 ALIGNMENT 20 Y12-17b02.p1k chr13 86 19 278411 278478 C 68 77.94 1311 reject_low 1 ALIGNMENT 997 Y12-17b02.p1k chr13 1171 12 280230 281394 C 1160 96.55 1311 accept 0 ALIGNMENT 975 Y12-17b03.q1k chr11 35 1218 633023 634209 F 1184 94.93 1244 accept 0 ALIGNMENT 954 Y12-17b03.p1k chr11 1116 25 636873 637972 C 1092 96.89 1210 accept 0 ALIGNMENT 939 Y12-17b04.q1k chr02 1211 30 760603 761767 C 1182 95.18 1250 accept 0 ALIGNMENT 965 Y12-17b04.p1k chr02 13 1099 757630 758708 F 1087 97.70 1293 accept 0 ALIGNMENT 986 Y12-17b05.p1k chr12 12 1127 224665 225783 F 1116 97.58 1296 accept 0 ALIGNMENT 751 Y12-17b05.q1k chr12 940 32 228838 229740 C 909 95.71 1386 accept 0 ALIGNMENT 983 Y12-17b06.p1k chr16 18 1211 274544 275752 F 1194 95.64 1309 accept 0 ALIGNMENT 641 Y12-17b06.q1k chr16 731 31 278191 278888 C 701 98.29 1445 accept 0 ALIGNMENT 488 Y12-17b07.q1k chr14 541 31 503730 504238 C 511 99.22 1479 accept 0 ALIGNMENT 595 Y12-17b07.p1k chr14 28 713 501533 502221 F 686 96.36 1432 accept 0 ALIGNMENT 824 Y12-17b09.p1k chr02 15 927 199728 200633 F 913 98.03 1378 accept 0 ALIGNMENT 828 Y12-17b09.q1k chr02 968 30 203408 204342 C 939 96.70 1370 accept 0 ALIGNMENT 752 Y12-17b10.q1k chr10 29 897 147069 147931 F 869 96.66 1393 accept 0 ALIGNMENT 985 Y12-17b10.p1k chr10 1190 12 150185 151389 C 1179 96.01 1272 accept 0 ALIGNMENT 855 Y12-17b11.q1k chr04 30 1029 179330 180338 F 1000 96.80 1342 accept 0 ALIGNMENT 982 Y12-17b11.p1k chr04 1179 17 183354 184532 C 1163 96.39 1341 accept 0 ALIGNMENT 670 Y12-17b14.q1k chr09 719 1 377544 378261 C 719 98.47 1294 accept 0 ALIGNMENT 668 Y12-17b14.p1k chr09 25 863 373161 373986 F 839 94.99 1481 accept 0 ALIGNMENT 980 Y12-17b17.p1k chr13 18 1199 173344 174522 F 1182 95.94 1282 accept 0 ALIGNMENT 909 Y12-17b17.q1k chr13 1078 30 176903 177949 C 1049 96.76 1292 accept 0 ALIGNMENT 817 Y12-17b18.p1k chr04 1218 20 777938 779144 C 1199 91.99 1299 accept 0 ALIGNMENT 21 Y12-17b18.p1k chr16 328 407 521034 521113 F 80 88.75 1299 reject_low 1 ALIGNMENT 0 Y12-17b18.p1k chr16 62 327 521034 521033 F 266 0.00 1299 reject_low 1 ALIGNMENT 21 Y12-17b18.p1k chr04 374 328 778729 778775 C 47 95.74 1299 reject_low 2 ALIGNMENT 0 Y12-17b18.p1k chr04 327 62 778776 778775 C 266 0.00 1299 reject_low 2 ALIGNMENT 0 Y12-17b18.p1k chr16 408 783 521113 521112 F 376 0.00 1299 reject_low 1 ALIGNMENT 0 Y12-17b18.p1k chr04 783 375 778730 778729 C 409 0.00 1299 reject_low 2 ALIGNMENT 978 Y12-17b18.q1k chr04 32 1258 773392 774618 F 1227 95.03 1290 accept 0 ALIGNMENT 977 Y12-17b21.q1k chr16 27 1139 808992 810103 F 1113 97.12 1161 ambiguous_trans 22 ALIGNMENT 982 Y12-17b21.q1k chr15 1139 27 595274 596385 C 1113 97.12 1161 ambiguous_trans 17 ALIGNMENT 736 Y12-17b21.q1k chr08 27 788 547959 548720 F 762 100.00 1161 ambiguous_trans 23 ALIGNMENT 0 Y12-17b21.q1k chr08 62 672 548719 548718 F 611 0.00 1161 ambiguous_trans 26 ALIGNMENT 977 Y12-17b21.q1k chr01 27 1139 164594 165705 F 1113 97.12 1161 ambiguous_trans 21 ALIGNMENT 985 Y12-17b21.q1k chr13 27 1139 377051 378162 F 1113 97.21 1161 ambiguous_trans 14 ALIGNMENT 979 Y12-17b21.q1k chr02 1139 27 260029 261140 C 1113 97.04 1161 ambiguous_trans 20 ALIGNMENT 988 Y12-17b21.q1k chr04 1139 27 1096221 1097332 C 1113 97.30 1161 ambiguous_trans 4 ALIGNMENT 985 Y12-17b21.q1k chr16 1139 27 56910 58021 C 1113 97.21 1161 ambiguous_trans 15 ALIGNMENT 509 Y12-17b21.q1k chr02 975 27 221658 222606 C 949 85.46 1161 ambiguous_trans 25 ALIGNMENT 982 Y12-17b21.q1k chr16 27 1139 854980 856091 F 1113 97.12 1161 ambiguous_trans 19 ALIGNMENT 988 Y12-17b21.q1k chr07 27 1139 566198 567309 F 1113 97.30 1161 ambiguous_trans 5 ALIGNMENT 985 Y12-17b21.q1k chr13 1139 27 196790 197901 C 1113 97.21 1161 ambiguous_trans 13 ALIGNMENT 982 Y12-17b21.q1k chr16 1139 27 844867 845978 C 1113 97.12 1161 ambiguous_trans 18 ALIGNMENT 985 Y12-17b21.q1k chr13 1139 27 184623 185734 C 1113 97.21 1161 ambiguous_trans 12 ALIGNMENT 988 Y12-17b21.q1k chr04 27 1139 649848 650959 F 1113 97.30 1161 ambiguous_trans 3 ALIGNMENT 985 Y12-17b21.q1k chr10 1139 27 472836 473947 C 1113 97.21 1161 ambiguous_trans 9 ALIGNMENT 526 Y12-17b21.q1k chr13 27 1116 361353 362441 F 1090 83.85 1161 ambiguous_trans 24 ALIGNMENT 976 Y12-17b21.q1k chr07 1147 27 536216 537334 C 1121 96.97 1161 ambiguous_trans 1 ALIGNMENT 985 Y12-17b21.q1k chr05 27 1139 447747 448858 F 1113 97.21 1161 ambiguous_trans 8 ALIGNMENT 985 Y12-17b21.q1k chr04 27 1139 991070 992181 F 1113 97.21 1161 ambiguous_trans 7 ALIGNMENT 901 Y12-17b21.p1k chr07 1072 20 704960 706008 C 1053 97.34 1204 accept 0 ALIGNMENT 985 Y12-17b21.q1k chr12 1139 27 651281 652392 C 1113 97.21 1161 ambiguous_trans 11 ALIGNMENT 982 Y12-17b21.q1k chr04 27 1139 882649 883760 F 1113 97.12 1161 ambiguous_trans 16 ALIGNMENT 976 Y12-17b21.q1k chr10 1147 27 478413 479531 C 1121 96.97 1161 ambiguous_trans 2 ALIGNMENT 988 Y12-17b21.q1k chr07 27 1139 821747 822858 F 1113 97.30 1161 ambiguous_trans 6 ALIGNMENT 985 Y12-17b21.q1k chr12 27 1139 219436 220547 F 1113 97.21 1161 ambiguous_trans_ua 10 ALIGNMENT 358 Y12-17b21.q1k chr08 673 1139 548719 549184 F 467 93.36 1161 ambiguous_trans 26 ALIGNMENT 889 Y12-17b22.q1k chr10 30 1077 453312 454339 F 1048 96.47 1224 accept 0 ALIGNMENT 464 Y12-17b22.q1k chr10 1035 313 338478 339187 C 723 89.21 1224 reject_low 2 ALIGNMENT 0 Y12-17b22.q1k chr10 312 62 339188 339187 C 251 0.00 1224 reject_low 2 ALIGNMENT 569 Y12-17b22.q1k chr07 315 1035 882817 883524 F 721 94.17 1224 reject_low 1 ALIGNMENT 883 Y12-17b22.p1k chr10 995 18 456637 457600 C 978 98.06 1266 accept 0 ALIGNMENT 0 Y12-17b22.q1k chr07 62 314 882817 882816 F 253 0.00 1224 reject_low 1 ALIGNMENT 936 Y12-17b23.q1k chr04 1146 33 770391 771499 C 1114 95.87 1169 accept 0 ALIGNMENT 933 Y12-17b23.p1k chr04 16 1163 766794 767929 F 1148 95.64 1172 accept 0 ALIGNMENT 990 Y12-17b24.p1k chr07 1141 23 386576 387688 C 1119 96.69 1188 accept 0 ALIGNMENT 676 Y12-17b24.p1k chr02 23 1176 659752 660896 F 1154 86.92 1188 reject_low 1 ALIGNMENT 954 Y12-17b24.q1k chr07 36 1155 383529 384633 F 1120 95.98 1194 accept 0 ALIGNMENT 0 Y12-17c01.p1k chr10 314 870 74610 74609 F 557 0.00 1231 reject_low 1 ALIGNMENT 244 Y12-17c01.p1k chr10 16 313 74311 74610 F 298 94.30 1231 reject_low 1 ALIGNMENT 1021 Y12-17c01.q1k chr03 35 1271 171643 172879 F 1237 95.39 1276 accept 0 ALIGNMENT 1009 Y12-17c01.p1k chr03 1229 15 176576 177795 C 1215 95.64 1231 accept 0 ALIGNMENT 553 Y12-17c02.q1k chr16 136 917 925324 926081 F 782 93.35 1504 ambiguous_tel 1 ALIGNMENT 895 Y12-17c02.p1k chr15 1118 16 740694 741810 C 1103 95.01 1223 accept 0 ALIGNMENT 946 Y12-17c03.p1k chr03 1147 19 224857 225980 C 1129 95.22 1229 accept 0 ALIGNMENT 467 Y12-17c03.q1k chr03 29 537 220459 220967 F 509 98.04 1326 accept 0 ALIGNMENT 137 Y12-17c04.q1k chr07 2 150 931545 931693 F 149 97.99 1085|0,4 accept 0 ALIGNMENT 628 Y12-17c04.p1k chr07 780 34 936352 937097 C 747 95.45 1307 accept 0 ALIGNMENT 0 Y12-17c04.q1k chr07 147 146 931690 932026 F 0 0.00 1085 accept 0 ALIGNMENT 129 Y12-17c04.q1k chr07 143 305 932023 932184 F 163 95.09 1085|4,0 accept 0 ALIGNMENT 769 Y12-17c06.q1k chr16 846 2 282381 283223 C 845 98.46 1290 accept 0 ALIGNMENT 0 Y12-17c06.q1k chr15 62 255 778555 778554 F 194 0.00 1290 reject_low 1 ALIGNMENT 594 Y12-17c06.p1k chr16 2 760 277832 278582 F 759 95.26 1282 accept 0 ALIGNMENT 225 Y12-17c06.q1k chr15 256 575 778555 778874 F 320 90.31 1290 reject_low 1 ALIGNMENT 0 Y12-17c06.q1k chr15 576 663 778874 778873 F 88 0.00 1290 reject_low 1 ALIGNMENT 524 Y12-17c07.q1k chr13 48 653 421928 422529 F 606 97.36 1464 accept 0 ALIGNMENT 955 Y12-17c07.p1k chr13 1156 21 425117 426262 C 1136 96.21 1282 accept 0 ALIGNMENT 778 Y12-17c08.p1k chr03 2 1000 208000 209016 F 999 93.59 1233 accept 0 ALIGNMENT 609 Y12-17c08.q1k chr03 695 1 212135 212831 C 695 96.40 1132 accept 0 ALIGNMENT 749 Y12-17c09.q1k chr16 913 1 177547 178454 C 913 96.17 1326 accept 0 ALIGNMENT 737 Y12-17c10.q1k chr12 860 1 876294 877140 C 860 96.51 1357 accept 0 ALIGNMENT 520 Y12-17c10.p1k chr12 120 872 871020 871749 F 753 92.30 1567 accept 0 ALIGNMENT 768 Y12-17c11.q1k chr14 28 874 693198 694040 F 847 97.64 1426 accept 0 ALIGNMENT 933 Y12-17c11.p1k chr14 1148 20 696314 697457 C 1129 95.84 1256 accept 0 ALIGNMENT 956 Y12-17c12.q1k chr11 1266 34 447495 448739 C 1233 93.92 1315 accept 0 ALIGNMENT 1005 Y12-17c12.p1k chr11 13 1170 442634 443801 F 1158 96.63 1314 accept 0 ALIGNMENT 65 Y12-17c14.p1k chr13 241 128 378304 378418 C 114 87.72 1291 reject_low 6 ALIGNMENT 84 Y12-17c14.p1k chr05 503 586 354929 355012 F 84 100.00 1291 reject_low 9 ALIGNMENT 71 Y12-17c14.p1k chr13 261 128 357004 357138 C 134 86.57 1291 reject_low 2 ALIGNMENT 0 Y12-17c14.p1k chr13 127 62 372831 372830 C 66 0.00 1291 reject_low 5 ALIGNMENT 77 Y12-17c14.p1k chr02 503 585 645161 645243 F 83 97.59 1291 reject_low 12 ALIGNMENT 0 Y12-17c14.p1k chr12 576 791 797249 797248 F 216 0.00 1291 reject_low 20 ALIGNMENT 0 Y12-17c14.p1k chr13 791 262 362587 362586 C 530 0.00 1291 reject_low 3 ALIGNMENT 75 Y12-17c14.p1k chr09 503 577 370413 370487 F 75 100.00 1291 reject_low 15 ALIGNMENT 0 Y12-17c14.p1k chr09 578 791 370487 370486 F 214 0.00 1291 reject_low 15 ALIGNMENT 0 Y12-17c14.p1k chr04 502 62 1017274 1017273 C 441 0.00 1291 reject_low 23 ALIGNMENT 0 Y12-17c14.p1k chr07 62 503 328586 328585 F 442 0.00 1291 reject_low 18 ALIGNMENT 0 Y12-17c14.p1k chr04 791 585 1017192 1017191 C 207 0.00 1291 reject_low 23 ALIGNMENT 0 Y12-17c14.p1k chr09 62 502 197588 197587 F 441 0.00 1291 reject_low 22 ALIGNMENT 0 Y12-17c14.p1k chr07 577 791 328658 328657 F 215 0.00 1291 reject_low 18 ALIGNMENT 0 Y12-17c14.p1k chr11 791 577 141023 141022 C 215 0.00 1291 reject_low 17 ALIGNMENT 0 Y12-17c14.p1k chr13 577 791 290872 290871 F 215 0.00 1291 reject_low 21 ALIGNMENT 74 Y12-17c14.p1k chr05 261 128 448980 449114 C 134 87.31 1291 reject_low 1 ALIGNMENT 72 Y12-17c14.p1k chr12 504 575 797178 797249 F 72 100.00 1291 reject_low 20 ALIGNMENT 0 Y12-17c14.p1k chr10 791 584 115927 115926 C 208 0.00 1291 reject_low 13 ALIGNMENT 74 Y12-17c14.p1k chr07 503 576 541853 541926 F 74 100.00 1291 reject_low 16 ALIGNMENT 44 Y12-17c14.p1k chr16 128 258 776278 776407 F 131 81.68 1291 reject_low 11 ALIGNMENT 60 Y12-17c14.p1k chr04 584 503 1017191 1017273 C 82 91.46 1291 reject_low 23 ALIGNMENT 0 Y12-17c14.p1k chr05 587 791 355012 355011 F 205 0.00 1291 reject_low 9 ALIGNMENT 0 Y12-17c14.p1k chr05 127 62 449115 449114 C 66 0.00 1291 reject_low 1 ALIGNMENT 0 Y12-17c14.p1k chr02 62 502 645161 645160 F 441 0.00 1291 reject_low 12 ALIGNMENT 74 Y12-17c14.p1k chr11 576 503 141022 141095 C 74 100.00 1291 reject_low 17 ALIGNMENT 0 Y12-17c14.p1k chr12 62 503 797178 797177 F 442 0.00 1291 reject_low 20 ALIGNMENT 0 Y12-17c14.p1k chr07 503 62 401602 401601 C 442 0.00 1291 reject_low 10 ALIGNMENT 0 Y12-17c14.p1k chr07 791 587 401520 401519 C 205 0.00 1291 reject_low 10 ALIGNMENT 78 Y12-17c14.p1k chr10 583 503 115926 116006 C 81 98.77 1291 reject_low 13 ALIGNMENT 0 Y12-17c14.p1k chr13 791 242 378305 378304 C 550 0.00 1291 reject_low 6 ALIGNMENT 76 Y12-17c14.p1k chr05 577 499 487324 487402 C 79 98.73 1291 reject_low 8 ALIGNMENT 65 Y12-17c14.p1k chr13 241 128 372716 372830 C 114 87.72 1291 reject_low 5 ALIGNMENT 0 Y12-17c14.p1k chr05 791 578 487325 487324 C 214 0.00 1291 reject_low 8 ALIGNMENT 68 Y12-17c14.p1k chr05 261 128 443393 443527 C 134 85.82 1291 reject_low 4 ALIGNMENT 0 Y12-17c14.p1k chr09 62 502 370413 370412 F 441 0.00 1291 reject_low 15 ALIGNMENT 0 Y12-17c14.p1k chr13 127 62 357139 357138 C 66 0.00 1291 reject_low 2 ALIGNMENT 46 Y12-17c14.p1k chr11 261 121 513174 513314 C 141 80.14 1291 reject_low 7 ALIGNMENT 0 Y12-17c14.p1k chr02 586 791 645243 645242 F 206 0.00 1291 reject_low 12 ALIGNMENT 76 Y12-17c14.p1k chr03 584 503 82452 82533 C 82 97.56 1291 reject_low 14 ALIGNMENT 0 Y12-17c14.p1k chr03 791 585 82453 82452 C 207 0.00 1291 reject_low 14 ALIGNMENT 0 Y12-17c14.p1k chr16 791 577 210191 210190 C 215 0.00 1291 reject_low 19 ALIGNMENT 0 Y12-17c14.p1k chr03 502 62 82534 82533 C 441 0.00 1291 reject_low 14 ALIGNMENT 0 Y12-17c14.p1k chr13 127 62 362721 362720 C 66 0.00 1291 reject_low 3 ALIGNMENT 0 Y12-17c14.p1k chr16 259 791 776407 776406 F 533 0.00 1291 reject_low 11 ALIGNMENT 0 Y12-17c14.p1k chr05 498 62 487403 487402 C 437 0.00 1291 reject_low 8 ALIGNMENT 0 Y12-17c14.p1k chr11 120 62 513315 513314 C 59 0.00 1291 reject_low 7 ALIGNMENT 0 Y12-17c14.p1k chr16 62 127 776278 776277 F 66 0.00 1291 reject_low 11 ALIGNMENT 0 Y12-17c14.p1k chr10 502 62 116007 116006 C 441 0.00 1291 reject_low 13 ALIGNMENT 71 Y12-17c14.p1k chr13 503 576 290799 290872 F 74 98.65 1291 reject_low 21 ALIGNMENT 61 Y12-17c14.p1k chr09 503 584 197588 197669 F 82 91.46 1291 reject_low 22 ALIGNMENT 73 Y12-17c14.p1k chr16 576 504 210190 210262 C 73 100.00 1291 reject_low 19 ALIGNMENT 0 Y12-17c14.p1k chr13 791 242 372717 372716 C 550 0.00 1291 reject_low 5 ALIGNMENT 1005 Y12-17c14.p1k chr05 4 1210 176596 177794 F 1207 95.86 1291 accept 0 ALIGNMENT 0 Y12-17c14.p1k chr07 577 791 541926 541925 F 215 0.00 1291 reject_low 16 ALIGNMENT 0 Y12-17c14.p1k chr05 127 62 443528 443527 C 66 0.00 1291 reject_low 4 ALIGNMENT 0 Y12-17c14.p1k chr05 791 262 443394 443393 C 530 0.00 1291 reject_low 4 ALIGNMENT 0 Y12-17c14.p1k chr16 503 62 210263 210262 C 442 0.00 1291 reject_low 19 ALIGNMENT 80 Y12-17c14.p1k chr07 586 504 401519 401601 C 83 98.80 1291 reject_low 10 ALIGNMENT 0 Y12-17c14.p1k chr05 62 502 354929 354928 F 441 0.00 1291 reject_low 9 ALIGNMENT 0 Y12-17c14.p1k chr11 791 262 513175 513174 C 530 0.00 1291 reject_low 7 ALIGNMENT 0 Y12-17c14.p1k chr09 585 791 197669 197668 F 207 0.00 1291 reject_low 22 ALIGNMENT 73 Y12-17c14.p1k chr07 504 576 328586 328658 F 73 100.00 1291 reject_low 18 ALIGNMENT 0 Y12-17c14.p1k chr13 791 262 357005 357004 C 530 0.00 1291 reject_low 2 ALIGNMENT 0 Y12-17c14.p1k chr05 791 262 448981 448980 C 530 0.00 1291 reject_low 1 ALIGNMENT 0 Y12-17c14.p1k chr07 62 502 541853 541852 F 441 0.00 1291 reject_low 16 ALIGNMENT 71 Y12-17c14.p1k chr13 261 128 362586 362720 C 134 86.57 1291 reject_low 3 ALIGNMENT 0 Y12-17c14.p1k chr13 127 62 378419 378418 C 66 0.00 1291 reject_low 6 ALIGNMENT 0 Y12-17c14.p1k chr13 62 502 290799 290798 F 441 0.00 1291 reject_low 21 ALIGNMENT 711 Y12-17c14.q1k chr05 909 48 178339 179201 C 862 95.59 1338 accept 0 ALIGNMENT 0 Y12-17c14.p1k chr11 502 62 141096 141095 C 441 0.00 1291 reject_low 17 ALIGNMENT 0 Y12-17c15.p1k chr06 712 711 199339 199368 F 0 0.00 1344 accept 0 ALIGNMENT 681 Y12-17c15.q1k chr06 729 1 202965 203693 C 729 98.63 1304 accept 0 ALIGNMENT 79 Y12-17c15.p1k chr06 705 868 199362 199518 F 164 87.80 1344|7,0 accept 0 ALIGNMENT 659 Y12-17c15.p1k chr06 16 718 198642 199345 F 703 98.72 1344|0,7 accept 0 ALIGNMENT 985 Y12-17c16.q1k chr16 1226 33 236104 237300 C 1194 95.23 1251 accept_chi 2 ALIGNMENT 1092 Y12-17c16.p1k chr12 16 1248 462188 463428 F 1233 96.76 1256 accept_chi 1 ALIGNMENT 1092 Y12-17c16.p1k chr12 16 1248 453051 454291 F 1233 96.76 1256 accept_chi 0 ALIGNMENT 684 Y12-17c18.q1k chr16 825 6 429373 430191 C 820 95.61 1163 accept 0 ALIGNMENT 486 Y12-17c18.p1k chr16 33 727 426014 426703 F 695 91.37 1379 accept 0 ALIGNMENT 0 Y12-17c19.q1k chr14 194 671 1998 1997 F 478 0.00 1275 reject_low 248 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 1928 1927 F 225 0.00 1275 reject_low 48 ALIGNMENT 108 Y12-17c19.q1k chr08 1 240 1667 1906 F 240 84.58 1275 reject_low 192 ALIGNMENT 206 Y12-17c19.q1k chr08 129 387 1651 1909 F 259 94.59 1275 reject_low 143 ALIGNMENT 55 Y12-17c19.q1k chr07 446 320 1089257 1089383 C 127 81.89 1275 reject_low 291 ALIGNMENT 0 Y12-17c19.q1k chr07 671 374 1088971 1088970 C 298 0.00 1275 reject_low 115 ALIGNMENT 81 Y12-17c19.q1k chr05 229 31 574893 575091 C 199 82.41 1275 reject_low 239 ALIGNMENT 82 Y12-17c19.q1k chr06 308 465 892 1049 F 158 84.81 1275 reject_low 237 ALIGNMENT 0 Y12-17c19.q1k chr13 466 671 1895 1894 F 206 0.00 1275 reject_low 222 ALIGNMENT 0 Y12-17c19.q1k chr12 374 671 2215 2214 F 298 0.00 1275 reject_low 33 ALIGNMENT 205 Y12-17c19.q1k chr16 373 31 945962 946304 C 343 88.05 1275 reject_low 29 ALIGNMENT 0 Y12-17c19.q1k chr02 104 671 2180 2179 F 568 0.00 1275 reject_low 300 ALIGNMENT 122 Y12-17c19.q1k chr05 461 165 575021 575317 C 297 81.48 1275 reject_low 194 ALIGNMENT 210 Y12-17c19.q1k chr10 1 450 1757 2206 F 450 84.00 1275 reject_low 135 ALIGNMENT 0 Y12-17c19.p1k chr02 753 386 4213 4212 C 368 0.00 1274 reject_low 20 ALIGNMENT 0 Y12-17c19.q1k chr12 100 128 2194 7325 F 29 0.00 1275 reject_low 95 ALIGNMENT 114 Y12-17c19.q1k chr09 1 357 2026 2382 F 357 79.27 1275 reject_low 190 ALIGNMENT 0 Y12-17c19.q1k chr14 62 92 1574 1573 F 31 0.00 1275 reject_low 110 ALIGNMENT 245 Y12-17c19.q1k chr05 465 93 574945 575317 C 373 89.81 1275 reject_low 107 ALIGNMENT 0 Y12-17c19.q1k chr05 447 671 1535 1534 F 225 0.00 1275 reject_low 86 ALIGNMENT 20 Y12-17c19.q1k chr10 1 173 2189 2361 F 173 73.41 1275 reject_low 352 ALIGNMENT 75 Y12-17c19.q1k chr06 57 429 893 1265 F 373 74.80 1275 reject_low 260 ALIGNMENT 81 Y12-17c19.q1k chr16 229 31 945962 946160 C 199 82.41 1275 reject_low 244 ALIGNMENT 0 Y12-17c19.p1k chr06 753 384 3051 3050 C 370 0.00 1274 reject_low 16 ALIGNMENT 272 Y12-17c19.q1k chr10 10 465 1731 2185 F 456 88.16 1275 reject_low 101 ALIGNMENT 207 Y12-17c19.q1k chr09 1 465 1882 2346 F 465 83.23 1275 reject_low 133 ALIGNMENT 0 Y12-17c19.q1k chr16 671 100 945985 945984 C 572 0.00 1275 reject_low 331 ALIGNMENT 79 Y12-17c19.q1k chr05 31 285 1804 2058 F 255 78.82 1275 reject_low 76 ALIGNMENT 0 Y12-17c19.q1k chr12 128 100 1070027 1076286 C 29 0.00 1275 reject_low 360 ALIGNMENT 281 Y12-17c19.q1k chr05 1 467 1486 1952 F 467 88.44 1275 reject_low 50 ALIGNMENT 0 Y12-17c19.q1k chr05 671 241 574919 574918 C 431 0.00 1275 reject_low 230 ALIGNMENT 0 Y12-17c19.q1k chr05 174 671 2054 2053 F 498 0.00 1275 reject_low 91 ALIGNMENT 0 Y12-17c19.q1k chr05 319 62 575307 575306 C 258 0.00 1275 reject_low 290 ALIGNMENT 0 Y12-17c19.q1k chr08 671 64 560440 560439 C 608 0.00 1275 reject_low 348 ALIGNMENT 0 Y12-17c19.q1k chr08 62 231 1646 1645 F 170 0.00 1275 reject_low 210 ALIGNMENT 70 Y12-17c19.q1k chr12 320 446 1694 1820 F 127 85.83 1275 reject_low 49 ALIGNMENT 0 Y12-17c19.q1k chr02 468 671 2004 2003 F 204 0.00 1275 reject_low 20 ALIGNMENT 0 Y12-17c19.q1k chr10 466 671 2149 2148 F 206 0.00 1275 reject_low 103 ALIGNMENT 767 Y12-17c19.p1k chr04 4 978 1526686 1527685 F 975 93.85 1274 ambiguous_tel 2 ALIGNMENT 0 Y12-17c19.q1k chr06 462 671 1009 1008 F 210 0.00 1275 reject_low 261 ALIGNMENT 0 Y12-17c19.q1k chr05 62 164 1470 1469 F 103 0.00 1275 reject_low 66 ALIGNMENT 0 Y12-17c19.q1k chr09 462 671 1982 1981 F 210 0.00 1275 reject_low 258 ALIGNMENT 91 Y12-17c19.q1k chr06 31 321 975 1265 F 291 78.69 1275 reject_low 227 ALIGNMENT 50 Y12-17c19.q1k chr16 461 356 946378 946483 C 106 83.02 1275 reject_low 298 ALIGNMENT 0 Y12-17c19.q1k chr09 62 212 1842 1841 F 151 0.00 1275 reject_low 199 ALIGNMENT 0 Y12-17c19.q1k chr12 319 62 1076679 1076678 C 258 0.00 1275 reject_low 82 ALIGNMENT 0 Y12-17c19.q1k chr10 447 671 1734 1733 F 225 0.00 1275 reject_low 347 ALIGNMENT 0 Y12-17c19.q1k chr10 62 200 1669 1668 F 139 0.00 1275 reject_low 202 ALIGNMENT 47 Y12-17c19.q1k chr16 157 1 945962 946118 C 157 79.62 1275 reject_low 287 ALIGNMENT 0 Y12-17c19.q1k chr16 466 671 1855 1854 F 206 0.00 1275 reject_low 111 ALIGNMENT 0 Y12-17c19.q1k chr08 307 671 1900 1899 F 365 0.00 1275 reject_low 183 ALIGNMENT 218 Y12-17c19.q1k chr16 1 409 1499 1907 F 409 86.31 1275 reject_low 126 ALIGNMENT 0 Y12-17c19.q1k chr16 62 283 1494 1493 F 222 0.00 1275 reject_low 268 ALIGNMENT 100 Y12-17c19.q1k chr13 1 301 1791 2091 F 301 80.07 1275 reject_low 207 ALIGNMENT 180 Y12-17c19.q1k chr02 57 465 1486 1894 F 409 82.64 1275 reject_low 147 ALIGNMENT 219 Y12-17c19.q1k chr09 106 465 1843 2202 F 360 88.06 1275 reject_low 137 ALIGNMENT 0 Y12-17c19.q1k chr16 62 231 1478 1477 F 170 0.00 1275 reject_low 224 ALIGNMENT 0 Y12-17c19.q1k chr05 671 194 574894 574893 C 478 0.00 1275 reject_low 245 ALIGNMENT 0 Y12-17c19.q1k chr08 355 62 560831 560830 C 294 0.00 1275 reject_low 306 ALIGNMENT 0 Y12-17c19.q1k chr12 671 447 1076589 1076588 C 225 0.00 1275 reject_low 84 ALIGNMENT 0 Y12-17c19.q1k chr14 62 200 1574 1573 F 139 0.00 1275 reject_low 180 ALIGNMENT 0 Y12-17c19.q1k chr14 302 671 1998 1997 F 370 0.00 1275 reject_low 208 ALIGNMENT 0 Y12-17c19.q1k chr05 62 231 1465 1464 F 170 0.00 1275 reject_low 72 ALIGNMENT 100 Y12-17c19.q1k chr14 1 301 1698 1998 F 301 80.07 1275 reject_low 208 ALIGNMENT 0 Y12-17c19.q1k chr08 195 671 1932 1931 F 477 0.00 1275 reject_low 276 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1069655 1069654 C 206 0.00 1275 reject_low 357 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 7698 7697 F 206 0.00 1275 reject_low 93 ALIGNMENT 0 Y12-17c19.q1k chr10 210 671 2361 2360 F 462 0.00 1275 reject_low 346 ALIGNMENT 47 Y12-17c19.q1k chr12 1 157 7594 7750 F 157 79.62 1275 reject_low 283 ALIGNMENT 157 Y12-17c19.q1k chr12 465 129 1076353 1076689 C 337 83.38 1275 reject_low 63 ALIGNMENT 49 Y12-17c19.q1k chr12 356 446 7337 7427 F 91 85.71 1275 reject_low 367 ALIGNMENT 0 Y12-17c19.q1k chr04 671 100 1530087 1530086 C 572 0.00 1275 reject_low 324 ALIGNMENT 0 Y12-17c19.q1k chr13 194 671 2091 2090 F 478 0.00 1275 reject_low 247 ALIGNMENT 41 Y12-17c19.q1k chr14 381 450 1574 1643 F 70 87.14 1275 reject_low 319 ALIGNMENT 0 Y12-17c19.q1k chr02 462 671 2106 2105 F 210 0.00 1275 reject_low 128 ALIGNMENT 259 Y12-17c19.p1k chr06 383 8 3050 3459 C 376 90.16 1274 reject_low 16 ALIGNMENT 242 Y12-17c19.q1k chr12 465 93 1076317 1076689 C 373 89.54 1275 reject_low 54 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 7463 7462 F 225 0.00 1275 reject_low 366 ALIGNMENT 99 Y12-17c19.q1k chr09 1 321 2062 2382 F 321 79.13 1275 reject_low 211 ALIGNMENT 122 Y12-17c19.q1k chr06 201 467 893 1159 F 267 82.77 1275 reject_low 184 ALIGNMENT 0 Y12-17c19.q1k chr04 671 338 1530065 1530064 C 334 0.00 1275 reject_low 158 ALIGNMENT 0 Y12-17c19.q1k chr16 671 447 946358 946357 C 225 0.00 1275 reject_low 269 ALIGNMENT 329 Y12-17c19.q1k chr02 1 467 1538 2004 F 467 91.86 1275 reject_low 20 ALIGNMENT 0 Y12-17c19.q1k chr12 410 671 7750 7749 F 262 0.00 1275 reject_low 25 ALIGNMENT 0 Y12-17c19.q1k chr14 466 671 1910 1909 F 206 0.00 1275 reject_low 163 ALIGNMENT 84 Y12-17c19.q1k chr10 232 446 1664 1878 F 215 80.47 1275 reject_low 253 ALIGNMENT 0 Y12-17c19.q1k chr09 447 671 2039 2038 F 225 0.00 1275 reject_low 186 ALIGNMENT 63 Y12-17c19.q1k chr05 284 446 1481 1643 F 163 80.37 1275 reject_low 81 ALIGNMENT 0 Y12-17c19.q1k chr05 468 671 1952 1951 F 204 0.00 1275 reject_low 50 ALIGNMENT 81 Y12-17c19.q1k chr07 240 1 1088995 1089234 C 240 80.83 1275 reject_low 231 ALIGNMENT 247 Y12-17c19.q1k chr08 373 1 560417 560789 C 373 90.62 1275 reject_low 104 ALIGNMENT 0 Y12-17c19.q1k chr04 671 447 1530316 1530315 C 225 0.00 1275 reject_low 262 ALIGNMENT 78 Y12-17c19.q1k chr12 229 31 1076265 1076463 C 199 81.91 1275 reject_low 361 ALIGNMENT 0 Y12-17c19.q1k chr10 447 671 2022 2021 F 225 0.00 1275 reject_low 113 ALIGNMENT 0 Y12-17c19.q1k chr05 355 62 575307 575306 C 294 0.00 1275 reject_low 303 ALIGNMENT 40 Y12-17c19.q1k chr10 31 230 2147 2346 F 200 75.50 1275 reject_low 323 ALIGNMENT 55 Y12-17c19.q1k chr04 446 320 1530351 1530477 C 127 81.89 1275 reject_low 289 ALIGNMENT 0 Y12-17c19.q1k chr13 466 671 2039 2038 F 206 0.00 1275 reject_low 109 ALIGNMENT 0 Y12-17c19.q1k chr05 390 671 2054 2053 F 282 0.00 1275 reject_low 64 ALIGNMENT 0 Y12-17c19.q1k chr09 210 671 2378 2377 F 462 0.00 1275 reject_low 345 ALIGNMENT 0 Y12-17c19.q1k chr16 241 671 1882 1881 F 431 0.00 1275 reject_low 234 ALIGNMENT 44 Y12-17c19.q1k chr12 157 1 1069602 1069758 C 157 78.98 1275 reject_low 83 ALIGNMENT 72 Y12-17c19.q1k chr16 284 446 1494 1656 F 163 82.21 1275 reject_low 268 ALIGNMENT 0 Y12-17c19.q1k chr08 164 671 1937 1936 F 508 0.00 1275 reject_low 332 ALIGNMENT 194 Y12-17c19.q1k chr12 1 409 1807 2215 F 409 84.35 1275 reject_low 32 ALIGNMENT 96 Y12-17c19.q1k chr08 32 270 1662 1900 F 239 82.01 1275 reject_low 216 ALIGNMENT 132 Y12-17c19.q1k chr12 465 201 1076425 1076689 C 265 84.15 1275 reject_low 65 ALIGNMENT 218 Y12-17c19.q1k chr14 1 409 1590 1998 F 409 86.31 1275 reject_low 125 ALIGNMENT 0 Y12-17c19.q1k chr16 671 466 946159 946158 C 206 0.00 1275 reject_low 30 ALIGNMENT 0 Y12-17c19.q1k chr09 62 356 1842 1841 F 295 0.00 1275 reject_low 272 ALIGNMENT 0 Y12-17c19.q1k chr09 462 671 2126 2125 F 210 0.00 1275 reject_low 141 ALIGNMENT 0 Y12-17c19.q1k chr16 671 462 946091 946090 C 210 0.00 1275 reject_low 27 ALIGNMENT 0 Y12-17c19.q1k chr16 451 671 1552 1551 F 221 0.00 1275 reject_low 320 ALIGNMENT 310 Y12-17c19.q1k chr12 1 465 1699 2163 F 465 90.54 1275 reject_low 19 ALIGNMENT 24 Y12-17c19.q1k chr08 1 63 1847 1909 F 63 84.13 1275 reject_low 337 ALIGNMENT 122 Y12-17c19.q1k chr16 165 461 1483 1779 F 297 81.48 1275 reject_low 198 ALIGNMENT 47 Y12-17c19.q1k chr14 1 157 1842 1998 F 157 79.62 1275 reject_low 285 ALIGNMENT 114 Y12-17c19.q1k chr10 1 357 2009 2365 F 357 79.27 1275 reject_low 191 ALIGNMENT 0 Y12-17c19.q1k chr12 671 451 1069958 1069957 C 221 0.00 1275 reject_low 365 ALIGNMENT 117 Y12-17c19.q1k chr05 1 357 1702 2058 F 357 79.55 1275 reject_low 67 ALIGNMENT 767 Y12-17c19.p1k chr12 4 978 1072887 1073886 F 975 93.85 1274 ambiguous_tel 3 ALIGNMENT 0 Y12-17c19.q1k chr12 200 194 1070027 1076264 C 7 0.00 1275 reject_low 359 ALIGNMENT 0 Y12-17c19.q1k chr10 468 671 2223 2222 F 204 0.00 1275 reject_low 127 ALIGNMENT 213 Y12-17c19.q1k chr02 1 465 1610 2074 F 465 83.66 1275 reject_low 129 ALIGNMENT 184 Y12-17c19.q1k chr05 1 429 1630 2058 F 429 82.75 1275 reject_low 58 ALIGNMENT 0 Y12-17c19.q1k chr09 390 671 2378 2377 F 282 0.00 1275 reject_low 174 ALIGNMENT 72 Y12-17c19.q1k chr12 1 193 7558 7750 F 193 81.87 1275 reject_low 46 ALIGNMENT 0 Y12-17c19.q1k chr08 62 355 1662 1661 F 294 0.00 1275 reject_low 305 ALIGNMENT 93 Y12-17c19.q1k chr08 229 31 560417 560615 C 199 84.42 1275 reject_low 217 ALIGNMENT 0 Y12-17c19.q1k chr02 212 671 2180 2179 F 460 0.00 1275 reject_low 204 ALIGNMENT 0 Y12-17c19.q1k chr05 128 62 575318 575317 C 67 0.00 1275 reject_low 160 ALIGNMENT 220 Y12-17c19.q1k chr12 373 1 1069602 1069974 C 373 88.20 1275 reject_low 55 ALIGNMENT 0 Y12-17c19.q1k chr16 231 62 946500 946499 C 170 0.00 1275 reject_low 40 ALIGNMENT 0 Y12-17c19.q1k chr14 62 231 1569 1568 F 170 0.00 1275 reject_low 223 ALIGNMENT 0 Y12-17c19.q1k chr12 380 62 1076690 1076689 C 319 0.00 1275 reject_low 88 ALIGNMENT 265 Y12-17c19.q1k chr02 1 465 1502 1966 F 465 87.31 1275 reject_low 102 ALIGNMENT 0 Y12-17c19.q1k chr04 380 62 1530489 1530488 C 319 0.00 1275 reject_low 314 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1076318 1076317 C 206 0.00 1275 reject_low 54 ALIGNMENT 49 Y12-17c19.q1k chr02 356 446 1497 1587 F 91 85.71 1275 reject_low 301 ALIGNMENT 209 Y12-17c19.q1k chr16 461 57 946090 946494 C 405 85.19 1275 reject_low 27 ALIGNMENT 0 Y12-17c19.q1k chr02 447 671 2019 2018 F 225 0.00 1275 reject_low 132 ALIGNMENT 0 Y12-17c19.q1k chr02 415 671 2167 2166 F 257 0.00 1275 reject_low 168 ALIGNMENT 0 Y12-17c19.q1k chr05 62 128 1470 1469 F 67 0.00 1275 reject_low 62 ALIGNMENT 69 Y12-17c19.q1k chr04 193 1 1530064 1530256 C 193 81.35 1275 reject_low 255 ALIGNMENT 177 Y12-17c19.q1k chr02 1 465 1682 2146 F 465 81.08 1275 reject_low 145 ALIGNMENT 0 Y12-17c19.q1k chr12 380 100 1070027 1076286 C 281 0.00 1275 reject_low 365 ALIGNMENT 0 Y12-17c19.q1k chr08 62 427 1662 1661 F 366 0.00 1275 reject_low 353 ALIGNMENT 0 Y12-17c19.q1k chr04 319 62 1530478 1530477 C 258 0.00 1275 reject_low 289 ALIGNMENT 24 Y12-17c19.q1k chr16 63 1 945984 946046 C 63 84.13 1275 reject_low 342 ALIGNMENT 81 Y12-17c19.q1k chr14 1 240 1734 1973 F 240 80.83 1275 reject_low 233 ALIGNMENT 0 Y12-17c19.q1k chr10 358 671 2365 2364 F 314 0.00 1275 reject_low 191 ALIGNMENT 0 Y12-17c19.q1k chr06 286 671 1265 1264 F 386 0.00 1275 reject_low 278 ALIGNMENT 55 Y12-17c19.q1k chr14 320 446 1585 1711 F 127 81.89 1275 reject_low 294 ALIGNMENT 518 Y12-17c19.q1k chr04 872 57 1529671 1530488 C 816 89.22 1275 ambiguous_tel 2 ALIGNMENT 0 Y12-17c19.q1k chr12 671 462 1076394 1076393 C 210 0.00 1275 reject_low 68 ALIGNMENT 0 Y12-17c19.q1k chr10 462 671 1821 1820 F 210 0.00 1275 reject_low 271 ALIGNMENT 0 Y12-17c19.q1k chr16 128 62 946495 946494 C 67 0.00 1275 reject_low 30 ALIGNMENT 0 Y12-17c19.q1k chr07 671 100 1088993 1088992 C 572 0.00 1275 reject_low 326 ALIGNMENT 0 Y12-17c19.q1k chr06 466 671 1085 1084 F 206 0.00 1275 reject_low 151 ALIGNMENT 0 Y12-17c19.q1k chr12 410 671 2215 2214 F 262 0.00 1275 reject_low 32 ALIGNMENT 74 Y12-17c19.q1k chr08 320 465 1662 1807 F 146 84.25 1275 reject_low 256 ALIGNMENT 0 Y12-17c19.q1k chr09 447 671 1895 1894 F 225 0.00 1275 reject_low 349 ALIGNMENT 527 Y12-17c19.q1k chr13 57 872 1667 2484 F 816 89.58 1275 reject_low 13 ALIGNMENT 493 Y12-17c19.q1k chr08 872 57 560023 560841 C 816 88.24 1275 reject_low 14 ALIGNMENT 0 Y12-17c19.q1k chr05 283 62 575307 575306 C 222 0.00 1275 reject_low 263 ALIGNMENT 261 Y12-17c19.p1k chr08 385 8 3743 4153 C 378 90.21 1274 reject_low 15 ALIGNMENT 0 Y12-17c19.q1k chr12 62 380 1683 1682 F 319 0.00 1275 reject_low 311 ALIGNMENT 0 Y12-17c19.q1k chr04 671 158 1530065 1530064 C 514 0.00 1275 reject_low 299 ALIGNMENT 0 Y12-17c19.q1k chr12 100 671 7728 7727 F 572 0.00 1275 reject_low 327 ALIGNMENT 0 Y12-17c19.q1k chr06 358 671 1265 1264 F 314 0.00 1275 reject_low 215 ALIGNMENT 73 Y12-17c19.q1k chr05 320 446 1481 1607 F 127 86.61 1275 reject_low 78 ALIGNMENT 75 Y12-17c19.q1k chr09 321 461 1842 1982 F 141 85.11 1275 reject_low 258 ALIGNMENT 113 Y12-17c19.q1k chr06 165 467 893 1195 F 303 80.20 1275 reject_low 200 ALIGNMENT 132 Y12-17c19.q1k chr05 465 201 575053 575317 C 265 84.15 1275 reject_low 177 ALIGNMENT 0 Y12-17c19.q1k chr10 466 671 2185 2184 F 206 0.00 1275 reject_low 101 ALIGNMENT 0 Y12-17c19.q1k chr02 62 164 1486 1485 F 103 0.00 1275 reject_low 182 ALIGNMENT 0 Y12-17c19.q1k chr10 62 283 1680 1679 F 222 0.00 1275 reject_low 270 ALIGNMENT 0 Y12-17c19.q1k chr02 62 319 1497 1496 F 258 0.00 1275 reject_low 288 ALIGNMENT 0 Y12-17c19.q1k chr08 466 671 1879 1878 F 206 0.00 1275 reject_low 210 ALIGNMENT 0 Y12-17c19.q1k chr08 671 447 560669 560668 C 225 0.00 1275 reject_low 265 ALIGNMENT 0 Y12-17c19.q1k chr07 671 302 1088971 1088970 C 370 0.00 1275 reject_low 206 ALIGNMENT 0 Y12-17c19.q1k chr10 62 164 1669 1668 F 103 0.00 1275 reject_low 170 ALIGNMENT 81 Y12-17c19.q1k chr16 240 1 945987 946226 C 240 80.83 1275 reject_low 235 ALIGNMENT 172 Y12-17c19.q1k chr02 129 465 1486 1822 F 337 84.87 1275 reject_low 149 ALIGNMENT 72 Y12-17c19.q1k chr13 284 446 1678 1840 F 163 82.21 1275 reject_low 266 ALIGNMENT 518 Y12-17c19.q1k chr12 872 57 1075872 1076689 C 816 89.22 1275 ambiguous_tel 3 ALIGNMENT 122 Y12-17c19.q1k chr14 165 461 1574 1870 F 297 81.48 1275 reject_low 197 ALIGNMENT 0 Y12-17c19.q1k chr14 451 671 1643 1642 F 221 0.00 1275 reject_low 319 ALIGNMENT 0 Y12-17c19.q1k chr16 671 466 946303 946302 C 206 0.00 1275 reject_low 252 ALIGNMENT 0 Y12-17c19.q1k chr07 671 451 1089326 1089325 C 221 0.00 1275 reject_low 316 ALIGNMENT 0 Y12-17c19.q1k chr05 671 158 574894 574893 C 514 0.00 1275 reject_low 281 ALIGNMENT 70 Y12-17c19.q1k chr16 446 320 946357 946483 C 127 85.83 1275 reject_low 269 ALIGNMENT 78 Y12-17c19.q1k chr12 229 31 1069602 1069800 C 199 81.91 1275 reject_low 75 ALIGNMENT 0 Y12-17c19.q1k chr14 466 671 1838 1837 F 206 0.00 1275 reject_low 180 ALIGNMENT 0 Y12-17c19.q1k chr08 92 62 560842 560841 C 31 0.00 1275 reject_low 139 ALIGNMENT 0 Y12-17c19.q1k chr08 671 230 560418 560417 C 442 0.00 1275 reject_low 217 ALIGNMENT 81 Y12-17c19.q1k chr12 1 240 7486 7725 F 240 80.83 1275 reject_low 44 ALIGNMENT 155 Y12-17c19.q1k chr12 337 1 1069602 1069938 C 337 83.98 1275 reject_low 61 ALIGNMENT 157 Y12-17c19.q1k chr12 465 129 1069690 1070026 C 337 83.38 1275 reject_low 360 ALIGNMENT 0 Y12-17c19.q1k chr05 380 62 575318 575317 C 319 0.00 1275 reject_low 315 ALIGNMENT 0 Y12-17c19.q1k chr08 380 62 560842 560841 C 319 0.00 1275 reject_low 317 ALIGNMENT 0 Y12-17c19.q1k chr05 210 671 2054 2053 F 462 0.00 1275 reject_low 85 ALIGNMENT 0 Y12-17c19.q1k chr07 671 338 1088971 1088970 C 334 0.00 1275 reject_low 154 ALIGNMENT 0 Y12-17c19.q1k chr12 158 164 2216 7325 F 7 0.00 1275 reject_low 98 ALIGNMENT 0 Y12-17c19.q1k chr16 164 62 946495 946494 C 103 0.00 1275 reject_low 38 ALIGNMENT 0 Y12-17c19.q1k chr12 338 671 7750 7749 F 334 0.00 1275 reject_low 37 ALIGNMENT 0 Y12-17c19.q1k chr08 241 671 1906 1905 F 431 0.00 1275 reject_low 192 ALIGNMENT 0 Y12-17c19.q1k chr10 62 128 1669 1668 F 67 0.00 1275 reject_low 167 ALIGNMENT 743 Y12-17c19.p1k chr05 764 8 4586 5343 C 757 99.60 1274 reject_low 8 ALIGNMENT 0 Y12-17c19.q1k chr16 230 671 1907 1906 F 442 0.00 1275 reject_low 243 ALIGNMENT 0 Y12-17c19.q1k chr05 671 466 575054 575053 C 206 0.00 1275 reject_low 177 ALIGNMENT 0 Y12-17c19.q1k chr12 62 128 1683 1682 F 67 0.00 1275 reject_low 35 ALIGNMENT 0 Y12-17c19.q1k chr12 451 671 7395 7394 F 221 0.00 1275 reject_low 368 ALIGNMENT 0 Y12-17c19.q1k chr04 671 64 1530087 1530086 C 608 0.00 1275 reject_low 334 ALIGNMENT 0 Y12-17c19.q1k chr05 447 671 1607 1606 F 225 0.00 1275 reject_low 78 ALIGNMENT 29 Y12-17c19.q1k chr05 1 173 1882 2054 F 173 75.14 1275 reject_low 91 ALIGNMENT 0 Y12-17c19.q1k chr07 200 62 1089395 1089394 C 139 0.00 1275 reject_low 178 ALIGNMENT 79 Y12-17c19.q1k chr16 465 284 946302 946483 C 182 81.87 1275 reject_low 252 ALIGNMENT 0 Y12-17c19.q1k chr06 210 671 1261 1260 F 462 0.00 1275 reject_low 344 ALIGNMENT 41 Y12-17c19.q1k chr12 450 381 1076620 1076689 C 70 87.14 1275 reject_low 88 ALIGNMENT 0 Y12-17c19.q1k chr09 430 671 2382 2381 F 242 0.00 1275 reject_low 172 ALIGNMENT 0 Y12-17c19.q1k chr16 671 447 946430 946429 C 225 0.00 1275 reject_low 312 ALIGNMENT 245 Y12-17c19.q1k chr07 465 93 1089022 1089394 C 373 89.81 1275 reject_low 108 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 7554 7553 F 206 0.00 1275 reject_low 96 ALIGNMENT 535 Y12-17c19.q1k chr09 31 872 1948 2779 F 842 89.07 1275 ambiguous_tel 1 ALIGNMENT 0 Y12-17c19.q1k chr09 62 248 1842 1841 F 187 0.00 1275 reject_low 186 ALIGNMENT 0 Y12-17c19.q1k chr09 462 671 2090 2089 F 210 0.00 1275 reject_low 199 ALIGNMENT 0 Y12-17c19.q1k chr08 451 671 1684 1683 F 221 0.00 1275 reject_low 353 ALIGNMENT 0 Y12-17c19.q1k chr12 62 92 1683 1682 F 31 0.00 1275 reject_low 24 ALIGNMENT 0 Y12-17c19.q1k chr08 380 671 1937 1936 F 292 0.00 1275 reject_low 159 ALIGNMENT 220 Y12-17c19.q1k chr12 373 1 1076265 1076637 C 373 88.20 1275|9,0 reject_low 356 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1076426 1076425 C 206 0.00 1275 reject_low 65 ALIGNMENT 0 Y12-17c19.q1k chr12 158 319 2216 7336 F 162 0.00 1275 reject_low 366 ALIGNMENT 0 Y12-17c19.q1k chr16 319 62 946484 946483 C 258 0.00 1275 reject_low 269 ALIGNMENT 261 Y12-17c19.p1k chr12 385 8 4011 4421 C 378 90.21 1274 reject_low 12,19,24,26,31,32,33,35,36,39,42,47,48,49 ALIGNMENT 0 Y12-17c19.q1k chr08 671 302 560418 560417 C 370 0.00 1275 reject_low 189 ALIGNMENT 0 Y12-17c19.q1k chr08 164 62 560842 560841 C 103 0.00 1275 reject_low 225 ALIGNMENT 0 Y12-17c19.q1k chr13 62 319 1678 1677 F 258 0.00 1275 reject_low 293 ALIGNMENT 49 Y12-17c19.q1k chr12 446 356 1069925 1070015 C 91 85.71 1275|0,9 reject_low 356 ALIGNMENT 72 Y12-17c19.q1k chr13 1 193 1899 2091 F 193 81.87 1275 reject_low 247 ALIGNMENT 0 Y12-17c19.q1k chr16 380 62 946495 946494 C 319 0.00 1275 reject_low 312 ALIGNMENT 0 Y12-17c19.q1k chr12 158 671 7750 7749 F 514 0.00 1275 reject_low 283 ALIGNMENT 155 Y12-17c19.q1k chr04 337 1 1530064 1530400 C 337 83.98 1275 reject_low 158 ALIGNMENT 0 Y12-17c19.q1k chr14 447 671 1747 1746 F 225 0.00 1275 reject_low 267 ALIGNMENT 34 Y12-17c19.q1k chr16 31 99 1817 1885 F 69 85.51 1275 reject_low 330 ALIGNMENT 0 Y12-17c19.q1k chr16 466 671 1711 1710 F 206 0.00 1275 reject_low 224 ALIGNMENT 0 Y12-17c19.q1k chr14 410 671 1998 1997 F 262 0.00 1275 reject_low 125 ALIGNMENT 99 Y12-17c19.q1k chr05 2 321 1739 2058 F 320 79.06 1275 reject_low 69 ALIGNMENT 0 Y12-17c19.q1k chr02 466 671 2146 2145 F 206 0.00 1275 reject_low 145 ALIGNMENT 0 Y12-17c19.q1k chr12 338 671 2215 2214 F 334 0.00 1275 reject_low 36 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1069763 1069762 C 206 0.00 1275 reject_low 359 ALIGNMENT 524 Y12-17c19.q1k chr07 872 57 1088577 1089394 C 816 89.46 1275 reject_low 7 ALIGNMENT 0 Y12-17c19.q1k chr08 671 462 560582 560581 C 210 0.00 1275 reject_low 185 ALIGNMENT 0 Y12-17c19.q1k chr04 671 230 1530065 1530064 C 442 0.00 1275 reject_low 254 ALIGNMENT 0 Y12-17c19.q1k chr05 164 62 575318 575317 C 103 0.00 1275 reject_low 194 ALIGNMENT 0 Y12-17c19.q1k chr05 671 447 575217 575216 C 225 0.00 1275 reject_low 303 ALIGNMENT 215 Y12-17c19.q1k chr02 1 446 1574 2019 F 446 84.53 1275 reject_low 132 ALIGNMENT 0 Y12-17c19.q1k chr06 62 343 892 891 F 282 0.00 1275 reject_low 261 ALIGNMENT 0 Y12-17c19.q1k chr02 447 671 1731 1730 F 225 0.00 1275 reject_low 259 ALIGNMENT 94 Y12-17c19.q1k chr16 232 465 1478 1711 F 234 80.77 1275 reject_low 224 ALIGNMENT 49 Y12-17c19.q1k chr08 356 446 1662 1752 F 91 85.71 1275 reject_low 305 ALIGNMENT 157 Y12-17c19.q1k chr12 1 337 7414 7750 F 337 84.27 1275 reject_low 37 ALIGNMENT 223 Y12-17c19.q1k chr13 1 373 1719 2091 F 373 88.47 1275 reject_low 116 ALIGNMENT 0 Y12-17c19.q1k chr08 231 62 560847 560846 C 170 0.00 1275 reject_low 221 ALIGNMENT 0 Y12-17c19.q1k chr13 466 671 2003 2002 F 206 0.00 1275 reject_low 162 ALIGNMENT 0 Y12-17c19.q1k chr07 671 466 1089023 1089022 C 206 0.00 1275 reject_low 108 ALIGNMENT 0 Y12-17c19.q1k chr02 456 671 1668 1667 F 216 0.00 1275 reject_low 238 ALIGNMENT 0 Y12-17c19.q1k chr14 62 319 1585 1584 F 258 0.00 1275 reject_low 294 ALIGNMENT 47 Y12-17c19.q1k chr05 157 1 574893 575049 C 157 79.62 1275 reject_low 281 ALIGNMENT 0 Y12-17c19.q1k chr06 62 307 892 891 F 246 0.00 1275 reject_low 237 ALIGNMENT 0 Y12-17c19.q1k chr13 62 92 1667 1666 F 31 0.00 1275 reject_low 109 ALIGNMENT 106 Y12-17c19.q1k chr08 232 465 1646 1879 F 234 82.48 1275 reject_low 210 ALIGNMENT 0 Y12-17c19.q1k chr08 671 338 560418 560417 C 334 0.00 1275 reject_low 144 ALIGNMENT 0 Y12-17c19.q1k chr06 62 92 893 892 F 31 0.00 1275 reject_low 16 ALIGNMENT 0 Y12-17c19.q1k chr08 200 62 560842 560841 C 139 0.00 1275 reject_low 185 ALIGNMENT 132 Y12-17c19.q1k chr13 201 465 1667 1931 F 265 84.15 1275 reject_low 179 ALIGNMENT 50 Y12-17c19.q1k chr12 356 461 1694 1799 F 106 83.02 1275 reject_low 297 ALIGNMENT 72 Y12-17c19.q1k chr12 446 284 1076516 1076678 C 163 82.21 1275 reject_low 79 ALIGNMENT 26 Y12-17c19.q1k chr09 393 446 1842 1895 F 54 83.33 1275 reject_low 349 ALIGNMENT 0 Y12-17c19.q1k chr10 286 671 2365 2364 F 386 0.00 1275 reject_low 280 ALIGNMENT 0 Y12-17c19.q1k chr10 462 671 1785 1784 F 210 0.00 1275 reject_low 274 ALIGNMENT 72 Y12-17c19.q1k chr16 193 1 945962 946154 C 193 81.87 1275 reject_low 250 ALIGNMENT 0 Y12-17c19.q1k chr10 322 671 2365 2364 F 350 0.00 1275 reject_low 212 ALIGNMENT 98 Y12-17c19.q1k chr08 446 165 560560 560841 C 282 79.43 1275 reject_low 225 ALIGNMENT 0 Y12-17c19.q1k chr08 62 128 1651 1650 F 67 0.00 1275 reject_low 143 ALIGNMENT 0 Y12-17c19.q1k chr02 62 283 1497 1496 F 222 0.00 1275 reject_low 238 ALIGNMENT 0 Y12-17c19.q1k chr04 355 62 1530478 1530477 C 294 0.00 1275 reject_low 302 ALIGNMENT 0 Y12-17c19.q1k chr16 62 355 1494 1493 F 294 0.00 1275 reject_low 309 ALIGNMENT 0 Y12-17c19.q1k chr07 671 466 1089059 1089058 C 206 0.00 1275 reject_low 161 ALIGNMENT 0 Y12-17c19.q1k chr12 100 380 2194 7325 F 281 0.00 1275 reject_low 368 ALIGNMENT 0 Y12-17c19.q1k chr02 451 671 1555 1554 F 221 0.00 1275 reject_low 313 ALIGNMENT 233 Y12-17c19.q1k chr16 465 93 946122 946494 C 373 88.74 1275 reject_low 21 ALIGNMENT 0 Y12-17c19.q1k chr12 164 158 1070027 1076264 C 7 0.00 1275 reject_low 363 ALIGNMENT 160 Y12-17c19.q1k chr07 465 129 1089058 1089394 C 337 83.68 1275 reject_low 161 ALIGNMENT 34 Y12-17c19.q1k chr12 99 31 1069624 1069692 C 69 85.51 1275 reject_low 89 ALIGNMENT 742 Y12-17c19.p1k chr12 4 764 1066335 1067097 F 761 99.47 1274 reject_low 9 ALIGNMENT 223 Y12-17c19.q1k chr12 1 373 7378 7750 F 373 88.47 1275 reject_low 23 ALIGNMENT 100 Y12-17c19.q1k chr07 301 1 1088970 1089270 C 301 80.07 1275 reject_low 206 ALIGNMENT 0 Y12-17c19.q1k chr16 427 62 946484 946483 C 366 0.00 1275 reject_low 355 ALIGNMENT 49 Y12-17c19.q1k chr14 356 446 1585 1675 F 91 85.71 1275 reject_low 308 ALIGNMENT 0 Y12-17c19.q1k chr12 671 447 1069926 1069925 C 225 0.00 1275 reject_low 356 ALIGNMENT 0 Y12-17c19.q1k chr08 62 380 1651 1650 F 319 0.00 1275 reject_low 296 ALIGNMENT 0 Y12-17c19.q1k chr05 671 451 575249 575248 C 221 0.00 1275 reject_low 315 ALIGNMENT 51 Y12-17c19.q1k chr08 1 194 1739 1932 F 194 78.35 1275 reject_low 276 ALIGNMENT 0 Y12-17c19.q1k chr05 671 462 575022 575021 C 210 0.00 1275 reject_low 194 ALIGNMENT 0 Y12-17c19.q1k chr02 447 671 1587 1586 F 225 0.00 1275 reject_low 301 ALIGNMENT 72 Y12-17c19.q1k chr07 446 284 1089221 1089383 C 163 82.21 1275 reject_low 264 ALIGNMENT 0 Y12-17c19.q1k chr12 241 671 7725 7724 F 431 0.00 1275 reject_low 44 ALIGNMENT 72 Y12-17c19.q1k chr08 446 284 560668 560830 C 163 82.21 1275 reject_low 265 ALIGNMENT 0 Y12-17c19.q1k chr09 468 671 2276 2275 F 204 0.00 1275 reject_low 142 ALIGNMENT 0 Y12-17c19.q1k chr16 62 128 1483 1482 F 67 0.00 1275 reject_low 164 ALIGNMENT 0 Y12-17c19.q1k chr16 410 671 1907 1906 F 262 0.00 1275 reject_low 126 ALIGNMENT 0 Y12-17c19.q1k chr05 358 671 2058 2057 F 314 0.00 1275 reject_low 67 ALIGNMENT 171 Y12-17c19.q1k chr05 57 465 1470 1878 F 409 81.91 1275 reject_low 60 ALIGNMENT 0 Y12-17c19.q1k chr06 466 671 941 940 F 206 0.00 1275 reject_low 310 ALIGNMENT 767 Y12-17c19.p1k chr15 4 978 1085851 1086850 F 975 93.85 1274 reject_low 10 ALIGNMENT 41 Y12-17c19.q1k chr07 450 381 1089325 1089394 C 70 87.14 1275 reject_low 316 ALIGNMENT 0 Y12-17c19.q1k chr09 286 671 2382 2381 F 386 0.00 1275 reject_low 279 ALIGNMENT 94 Y12-17c19.q1k chr12 465 232 1076461 1076694 C 234 80.77 1275 reject_low 73 ALIGNMENT 0 Y12-17c19.q1k chr05 468 671 1988 1987 F 204 0.00 1275 reject_low 51 ALIGNMENT 212 Y12-17c19.q1k chr10 1 467 1829 2295 F 467 83.51 1275 reject_low 121 ALIGNMENT 0 Y12-17c19.q1k chr07 671 241 1088996 1088995 C 431 0.00 1275 reject_low 231 ALIGNMENT 81 Y12-17c19.q1k chr05 240 1 574918 575157 C 240 80.83 1275 reject_low 230 ALIGNMENT 165 Y12-17c19.q1k chr06 272 465 892 1085 F 194 95.88 1275 reject_low 151 ALIGNMENT 0 Y12-17c19.q1k chr13 62 380 1667 1666 F 319 0.00 1275 reject_low 318 ALIGNMENT 0 Y12-17c19.q1k chr16 671 466 946123 946122 C 206 0.00 1275 reject_low 21 ALIGNMENT 0 Y12-17c19.q1k chr12 671 302 1069603 1069602 C 370 0.00 1275 reject_low 70 ALIGNMENT 257 Y12-17c19.q1k chr10 57 461 1669 2073 F 405 89.14 1275 reject_low 105 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 2055 2054 F 206 0.00 1275 reject_low 24 ALIGNMENT 0 Y12-17c19.p1k chr12 765 871 1067098 1067124 F 107 0.00 1274 reject_low 9 ALIGNMENT 737 Y12-17c19.p1k chr16 991 8 4275 5280 C 984 92.68 1274 ambiguous_tel 5 ALIGNMENT 0 Y12-17c19.q1k chr02 462 671 2178 2177 F 210 0.00 1275 reject_low 138 ALIGNMENT 0 Y12-17c19.q1k chr04 671 447 1530352 1530351 C 225 0.00 1275 reject_low 289 ALIGNMENT 0 Y12-17c19.q1k chr08 470 671 1847 1846 F 202 0.00 1275 reject_low 187 ALIGNMENT 43 Y12-17c19.q1k chr05 381 446 1470 1535 F 66 89.39 1275 reject_low 86 ALIGNMENT 0 Y12-17c19.q1k chr05 671 64 574916 574915 C 608 0.00 1275 reject_low 335 ALIGNMENT 0 Y12-17c19.q1k chr13 447 671 1840 1839 F 225 0.00 1275 reject_low 266 ALIGNMENT 0 Y12-17c19.q1k chr14 62 128 1574 1573 F 67 0.00 1275 reject_low 163 ALIGNMENT 122 Y12-17c19.q1k chr12 165 461 7326 7622 F 297 81.48 1275 reject_low 98 ALIGNMENT 160 Y12-17c19.q1k chr14 129 465 1574 1910 F 337 83.68 1275 reject_low 163 ALIGNMENT 24 Y12-17c19.q1k chr12 1 63 7666 7728 F 63 84.13 1275 reject_low 338 ALIGNMENT 224 Y12-17c19.q1k chr02 29 461 1674 2106 F 433 85.22 1275 reject_low 128 ALIGNMENT 0 Y12-17c19.q1k chr12 462 671 2087 2086 F 210 0.00 1275 reject_low 31 ALIGNMENT 0 Y12-17c19.q1k chr05 671 410 574894 574893 C 262 0.00 1275 reject_low 122 ALIGNMENT 157 Y12-17c19.q1k chr10 129 465 1669 2005 F 337 83.38 1275 reject_low 167 ALIGNMENT 0 Y12-17c19.q1k chr05 447 671 1679 1678 F 225 0.00 1275 reject_low 72 ALIGNMENT 0 Y12-17c19.q1k chr16 64 671 1885 1884 F 608 0.00 1275 reject_low 341 ALIGNMENT 0 Y12-17c19.q1k chr12 62 200 1683 1682 F 139 0.00 1275 reject_low 48 ALIGNMENT 0 Y12-17c19.q1k chr07 671 447 1089294 1089293 C 225 0.00 1275 reject_low 304 ALIGNMENT 0 Y12-17c19.q1k chr16 447 671 1620 1619 F 225 0.00 1275 reject_low 295 ALIGNMENT 54 Y12-17c19.q1k chr09 1 285 2098 2382 F 285 75.44 1275 reject_low 279 ALIGNMENT 0 Y12-17c19.q1k chr02 68 671 2180 2179 F 604 0.00 1275 reject_low 343 ALIGNMENT 0 Y12-17c19.q1k chr02 392 671 2180 2179 F 280 0.00 1275 reject_low 146 ALIGNMENT 0 Y12-17c19.q1k chr10 468 671 2259 2258 F 204 0.00 1275 reject_low 136 ALIGNMENT 0 Y12-17c19.q1k chr12 237 236 2187 7325 F 0 0.00 1275 reject_low 96 ALIGNMENT 81 Y12-17c19.q1k chr16 31 229 1709 1907 F 199 82.41 1275 reject_low 243 ALIGNMENT 20 Y12-17c19.q1k chr09 1 173 2206 2378 F 173 73.41 1275 reject_low 351 ALIGNMENT 72 Y12-17c19.q1k chr14 284 446 1585 1747 F 163 82.21 1275 reject_low 267 ALIGNMENT 222 Y12-17c19.q1k chr12 32 465 1694 2127 F 434 85.02 1275 reject_low 26 ALIGNMENT 47 Y12-17c19.q1k chr13 1 157 1935 2091 F 157 79.62 1275 reject_low 284 ALIGNMENT 160 Y12-17c19.q1k chr05 465 129 574981 575317 C 337 83.68 1275 reject_low 160 ALIGNMENT 0 Y12-17c19.q1k chr07 671 447 1089258 1089257 C 225 0.00 1275 reject_low 291 ALIGNMENT 0 Y12-17c19.q1k chr16 671 462 946379 946378 C 210 0.00 1275 reject_low 298 ALIGNMENT 215 Y12-17c19.q1k chr12 409 1 1069602 1070010 C 409 86.06 1275 reject_low 56 ALIGNMENT 94 Y12-17c19.q1k chr06 31 389 903 1261 F 359 76.88 1275 reject_low 226 ALIGNMENT 0 Y12-17c19.q1k chr16 671 374 945963 945962 C 298 0.00 1275 reject_low 29 ALIGNMENT 0 Y12-17c19.q1k chr12 292 293 1070007 1076273 C 0 0.00 1275 reject_low 362 ALIGNMENT 0 Y12-17c19.q1k chr10 62 231 1664 1663 F 170 0.00 1275 reject_low 253 ALIGNMENT 41 Y12-17c19.q1k chr16 381 450 1483 1552 F 70 87.14 1275 reject_low 320 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 2127 2126 F 206 0.00 1275 reject_low 26 ALIGNMENT 34 Y12-17c19.q1k chr16 99 31 945984 946052 C 69 85.51 1275 reject_low 331 ALIGNMENT 0 Y12-17c19.q1k chr12 60 61 1070023 1076289 C 0 0.00 1275 reject_low 9 ALIGNMENT 0 Y12-17c19.q1k chr13 100 671 2069 2068 F 572 0.00 1275 reject_low 328 ALIGNMENT 0 Y12-17c19.q1k chr07 671 447 1089222 1089221 C 225 0.00 1275 reject_low 264 ALIGNMENT 166 Y12-17c19.q1k chr12 1 337 1879 2215 F 337 85.16 1275 reject_low 36 ALIGNMENT 0 Y12-17c19.p1k chr05 871 62 4559 4558 C 810 0.00 1274 reject_low 50,51,52,53,58,59,60,62,64,66,67,69,71,72,76,78,80,81,85,86,87,91,92 ALIGNMENT 176 Y12-17c19.q1k chr09 70 467 1843 2240 F 398 82.66 1275 reject_low 148 ALIGNMENT 0 Y12-17c19.q1k chr05 671 338 574894 574893 C 334 0.00 1275 reject_low 153 ALIGNMENT 0 Y12-17c19.q1k chr12 671 462 1069731 1069730 C 210 0.00 1275 reject_low 363 ALIGNMENT 0 Y12-17c19.q1k chr12 451 671 1716 1715 F 221 0.00 1275 reject_low 354 ALIGNMENT 0 Y12-17c19.q1k chr14 447 671 1675 1674 F 225 0.00 1275 reject_low 308 ALIGNMENT 0 Y12-17c19.q1k chr02 466 671 1894 1893 F 206 0.00 1275 reject_low 147 ALIGNMENT 0 Y12-17c19.q1k chr14 230 671 1998 1997 F 442 0.00 1275 reject_low 242 ALIGNMENT 0 Y12-17c19.q1k chr05 466 671 1878 1877 F 206 0.00 1275 reject_low 60 ALIGNMENT 72 Y12-17c19.q1k chr07 193 1 1088970 1089162 C 193 81.87 1275 reject_low 246 ALIGNMENT 204 Y12-17c19.q1k chr09 177 461 1842 2126 F 285 91.58 1275 reject_low 141 ALIGNMENT 218 Y12-17c19.q1k chr12 1 409 7342 7750 F 409 86.31 1275 reject_low 25 ALIGNMENT 0 Y12-17c19.q1k chr05 466 671 1914 1913 F 206 0.00 1275 reject_low 53 ALIGNMENT 218 Y12-17c19.q1k chr02 32 467 1497 1932 F 436 84.63 1275 reject_low 130 ALIGNMENT 0 Y12-17c19.q1k chr12 231 62 1076695 1076694 C 170 0.00 1275 reject_low 73 ALIGNMENT 132 Y12-17c19.q1k chr12 465 201 1069762 1070026 C 265 84.15 1275 reject_low 359 ALIGNMENT 0 Y12-17c19.q1k chr12 62 427 1694 1693 F 366 0.00 1275 reject_low 354 ALIGNMENT 81 Y12-17c19.q1k chr12 1 240 1951 2190 F 240 80.83 1275|0,4 reject_low 96 ALIGNMENT 212 Y12-17c19.q1k chr09 1 467 1846 2312 F 467 83.51 1275 reject_low 120 ALIGNMENT 0 Y12-17c19.q1k chr16 355 62 946484 946483 C 294 0.00 1275 reject_low 298 ALIGNMENT 0 Y12-17c19.q1k chr09 62 105 1843 1842 F 44 0.00 1275 reject_low 137 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1069691 1069690 C 206 0.00 1275 reject_low 360 ALIGNMENT 0 Y12-17c19.q1k chr16 671 241 945988 945987 C 431 0.00 1275 reject_low 235 ALIGNMENT 41 Y12-17c19.q1k chr05 450 381 575248 575317 C 70 87.14 1275 reject_low 315 ALIGNMENT 0 Y12-17c19.q1k chr13 338 671 2091 2090 F 334 0.00 1275 reject_low 155 ALIGNMENT 0 Y12-17c19.q1k chr12 97 96 2191 7329 F 0 0.00 1275 reject_low 93 ALIGNMENT 0 Y12-17c19.q1k chr12 671 451 1076621 1076620 C 221 0.00 1275 reject_low 88 ALIGNMENT 0 Y12-17c19.q1k chr02 466 671 2074 2073 F 206 0.00 1275 reject_low 129 ALIGNMENT 83 Y12-17c19.q1k chr12 201 446 1683 1928 F 246 78.86 1275 reject_low 48 ALIGNMENT 20 Y12-17c19.q1k chr12 428 450 1694 1716 F 23 95.65 1275 reject_low 354 ALIGNMENT 0 Y12-17c19.q1k chr05 447 671 1643 1642 F 225 0.00 1275 reject_low 81 ALIGNMENT 0 Y12-17c19.q1k chr12 671 338 1069603 1069602 C 334 0.00 1275 reject_low 61 ALIGNMENT 132 Y12-17c19.q1k chr14 201 465 1574 1838 F 265 84.15 1275 reject_low 180 ALIGNMENT 0 Y12-17c19.q1k chr16 671 462 946271 946270 C 210 0.00 1275 reject_low 40 ALIGNMENT 0 Y12-17c19.q1k chr16 374 671 1907 1906 F 298 0.00 1275 reject_low 118 ALIGNMENT 0 Y12-17c19.q1k chr02 447 671 1767 1766 F 225 0.00 1275 reject_low 182 ALIGNMENT 0 Y12-17c19.q1k chr09 231 671 2363 2362 F 441 0.00 1275 reject_low 322 ALIGNMENT 96 Y12-17c19.q1k chr02 1 211 1970 2180 F 211 84.83 1275 reject_low 204 ALIGNMENT 0 Y12-17c19.q1k chr14 62 283 1585 1584 F 222 0.00 1275 reject_low 267 ALIGNMENT 0 Y12-17c19.q1k chr06 231 671 1246 1245 F 441 0.00 1275 reject_low 321 ALIGNMENT 0 Y12-17c19.q1k chr09 466 671 2166 2165 F 206 0.00 1275 reject_low 152 ALIGNMENT 47 Y12-17c19.q1k chr16 1 157 1751 1907 F 157 79.62 1275 reject_low 286 ALIGNMENT 0 Y12-17c19.p1k chr12 753 386 9547 9546 C 368 0.00 1274 reject_low 17,23,25,37,43,44,45,46,93,94,95,96,97,98,99 ALIGNMENT 117 Y12-17c19.q1k chr16 461 232 946270 946499 C 230 84.35 1275 reject_low 40 ALIGNMENT 0 Y12-17c19.p1k chr12 753 386 4012 4011 C 368 0.00 1274 reject_low 12,19,24,26,31,32,33,35,36,39,42,47,48,49 ALIGNMENT 122 Y12-17c19.q1k chr07 461 165 1089098 1089394 C 297 81.48 1275 reject_low 195 ALIGNMENT 37 Y12-17c19.q1k chr06 416 465 892 941 F 50 92.00 1275 reject_low 310 ALIGNMENT 125 Y12-17c19.q1k chr08 461 201 560581 560841 C 261 83.52 1275 reject_low 185 ALIGNMENT 0 Y12-17c19.q1k chr06 62 415 892 891 F 354 0.00 1275 reject_low 310 ALIGNMENT 28 Y12-17c19.q1k chr10 1 209 2153 2361 F 209 74.16 1275 reject_low 346 ALIGNMENT 0 Y12-17c19.q1k chr10 174 671 2361 2360 F 498 0.00 1275 reject_low 352 ALIGNMENT 0 Y12-17c19.q1k chr05 462 671 1838 1837 F 210 0.00 1275 reject_low 59 ALIGNMENT 0 Y12-17c19.q1k chr09 62 140 1842 1841 F 79 0.00 1275 reject_low 152 ALIGNMENT 0 Y12-17c19.q1k chr06 62 380 893 892 F 319 0.00 1275 reject_low 273 ALIGNMENT 518 Y12-17c19.q1k chr12 872 57 1069209 1070026 C 816 89.22 1275|0,4 reject_low 9 ALIGNMENT 0 Y12-17c19.q1k chr04 671 466 1530117 1530116 C 206 0.00 1275 reject_low 112 ALIGNMENT 81 Y12-17c19.q1k chr08 1 230 1703 1932 F 230 81.30 1275 reject_low 228 ALIGNMENT 737 Y12-17c19.p1k chr14 991 8 4366 5371 C 984 92.68 1274 ambiguous_tel 4 ALIGNMENT 0 Y12-17c19.q1k chr10 466 671 2005 2004 F 206 0.00 1275 reject_low 167 ALIGNMENT 0 Y12-17c19.q1k chr10 390 671 2361 2360 F 282 0.00 1275 reject_low 175 ALIGNMENT 72 Y12-17c19.q1k chr12 446 284 1069853 1070015 C 163 82.21 1275|0,9 reject_low 362,364 ALIGNMENT 41 Y12-17c19.q1k chr12 450 381 1069957 1070026 C 70 87.14 1275 reject_low 365 ALIGNMENT 0 Y12-17c19.p1k chr08 753 386 3744 3743 C 368 0.00 1274 reject_low 15 ALIGNMENT 0 Y12-17c19.q1k chr13 410 671 2091 2090 F 262 0.00 1275 reject_low 124 ALIGNMENT 142 Y12-17c19.q1k chr10 31 389 2003 2361 F 359 81.34 1275 reject_low 175 ALIGNMENT 197 Y12-17c19.q1k chr16 409 1 945962 946370 C 409 84.60 1275 reject_low 28 ALIGNMENT 0 Y12-17c19.q1k chr12 293 292 2207 7345 F 0 0.00 1275 reject_low 97 ALIGNMENT 0 Y12-17c19.q1k chr14 62 355 1585 1584 F 294 0.00 1275 reject_low 308 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 2163 2162 F 206 0.00 1275 reject_low 19 ALIGNMENT 0 Y12-17c19.q1k chr14 338 671 1998 1997 F 334 0.00 1275 reject_low 156 ALIGNMENT 24 Y12-17c19.q1k chr16 1 63 1823 1885 F 63 84.13 1275 reject_low 341 ALIGNMENT 798 Y12-17c19.p1k chr10 991 8 4737 5743 C 984 94.82 1274 ambiguous_tel 0 ALIGNMENT 49 Y12-17c19.q1k chr08 446 356 560740 560830 C 91 85.71 1275 reject_low 306 ALIGNMENT 0 Y12-17c19.q1k chr14 100 671 1976 1975 F 572 0.00 1275 reject_low 329 ALIGNMENT 0 Y12-17c19.q1k chr12 671 241 1069628 1069627 C 431 0.00 1275 reject_low 74 ALIGNMENT 0 Y12-17c19.q1k chr13 447 671 1768 1767 F 225 0.00 1275 reject_low 307 ALIGNMENT 0 Y12-17c19.q1k chr12 230 671 7750 7749 F 442 0.00 1275 reject_low 45 ALIGNMENT 0 Y12-17c19.q1k chr05 671 447 575145 575144 C 225 0.00 1275 reject_low 263 ALIGNMENT 0 Y12-17c19.q1k chr02 62 200 1486 1485 F 139 0.00 1275 reject_low 259 ALIGNMENT 223 Y12-17c19.q1k chr05 373 1 574893 575265 C 373 88.47 1275 reject_low 114 ALIGNMENT 0 Y12-17c19.q1k chr09 466 671 2022 2021 F 206 0.00 1275 reject_low 277 ALIGNMENT 0 Y12-17c19.q1k chr13 302 671 2091 2090 F 370 0.00 1275 reject_low 207 ALIGNMENT 72 Y12-17c19.q1k chr04 446 284 1530315 1530477 C 163 82.21 1275 reject_low 262 ALIGNMENT 55 Y12-17c19.q1k chr13 320 446 1678 1804 F 127 81.89 1275 reject_low 293 ALIGNMENT 0 Y12-17c19.q1k chr08 128 62 560842 560841 C 67 0.00 1275 reject_low 150 ALIGNMENT 0 Y12-17c19.q1k chr08 671 466 560506 560505 C 206 0.00 1275 reject_low 150 ALIGNMENT 0 Y12-17c19.q1k chr12 230 283 2216 7336 F 54 0.00 1275 reject_low 99 ALIGNMENT 0 Y12-17c19.q1k chr05 451 671 1503 1502 F 221 0.00 1275 reject_low 92 ALIGNMENT 100 Y12-17c19.q1k chr16 301 1 945962 946262 C 301 80.07 1275 reject_low 41 ALIGNMENT 0 Y12-17c19.q1k chr05 671 302 574894 574893 C 370 0.00 1275 reject_low 205 ALIGNMENT 94 Y12-17c19.q1k chr04 465 232 1530260 1530493 C 234 80.77 1275 reject_low 218 ALIGNMENT 137 Y12-17c19.q1k chr02 165 446 1486 1767 F 282 84.04 1275 reject_low 182 ALIGNMENT 225 Y12-17c19.q1k chr16 465 32 946050 946483 C 434 85.25 1275 reject_low 22 ALIGNMENT 0 Y12-17c19.q1k chr04 671 241 1530090 1530089 C 431 0.00 1275 reject_low 236 ALIGNMENT 0 Y12-17c19.q1k chr07 671 466 1089131 1089130 C 206 0.00 1275 reject_low 178 ALIGNMENT 81 Y12-17c19.q1k chr12 31 229 7552 7750 F 199 82.41 1275 reject_low 45 ALIGNMENT 245 Y12-17c19.q1k chr12 93 465 7326 7698 F 373 89.81 1275|4,0 reject_low 93 ALIGNMENT 275 Y12-17c19.q1k chr05 1 467 1522 1988 F 467 88.01 1275 reject_low 51 ALIGNMENT 0 Y12-17c19.q1k chr16 447 671 1656 1655 F 225 0.00 1275 reject_low 268 ALIGNMENT 0 Y12-17c19.q1k chr07 92 62 1089395 1089394 C 31 0.00 1275 reject_low 108 ALIGNMENT 0 Y12-17c19.q1k chr16 62 92 1483 1482 F 31 0.00 1275 reject_low 111 ALIGNMENT 34 Y12-17c19.q1k chr13 31 99 2001 2069 F 69 85.51 1275 reject_low 328 ALIGNMENT 51 Y12-17c19.p1k chr05 978 872 4460 4558 C 107 87.85 1274 reject_low 8,50,51,52,53,58,59,60,62,64,66,67,69,71,72,76,78,80,81,85,86,87,91,92 ALIGNMENT 72 Y12-17c19.q1k chr12 284 446 7337 7499 F 163 82.21 1275|9,0 reject_low 97,99 ALIGNMENT 0 Y12-17c19.q1k chr04 92 62 1530489 1530488 C 31 0.00 1275 reject_low 112 ALIGNMENT 0 Y12-17c19.q1k chr12 671 230 1069603 1069602 C 442 0.00 1275 reject_low 75 ALIGNMENT 44 Y12-17c19.q1k chr04 157 1 1530064 1530220 C 157 78.98 1275 reject_low 299 ALIGNMENT 242 Y12-17c19.q1k chr12 465 93 1069654 1070026 C 373 89.54 1275|0,4 reject_low 357 ALIGNMENT 0 Y12-17c19.q1k chr16 62 200 1483 1482 F 139 0.00 1275 reject_low 181 ALIGNMENT 20 Y12-17c19.q1k chr08 428 450 1662 1684 F 23 95.65 1275 reject_low 353 ALIGNMENT 44 Y12-17c19.q1k chr12 157 1 1076265 1076421 C 157 78.98 1275 reject_low 363 ALIGNMENT 0 Y12-17c19.q1k chr05 62 92 1470 1469 F 31 0.00 1275 reject_low 59 ALIGNMENT 0 Y12-17c19.q1k chr05 322 671 2058 2057 F 350 0.00 1275 reject_low 69 ALIGNMENT 43 Y12-17c19.q1k chr12 381 446 1683 1748 F 66 89.39 1275 reject_low 311 ALIGNMENT 0 Y12-17c19.q1k chr12 671 447 1076517 1076516 C 225 0.00 1275 reject_low 79 ALIGNMENT 0 Y12-17c19.q1k chr10 447 671 1842 1841 F 225 0.00 1275 reject_low 270 ALIGNMENT 0 Y12-17c19.q1k chr12 92 62 1076690 1076689 C 31 0.00 1275 reject_low 54 ALIGNMENT 0 Y12-17c19.q1k chr09 468 671 2240 2239 F 204 0.00 1275 reject_low 148 ALIGNMENT 0 Y12-17c19.q1k chr08 271 671 1900 1899 F 401 0.00 1275 reject_low 216 ALIGNMENT 252 Y12-17c19.p1k chr02 385 8 4212 4622 C 378 89.42 1274 reject_low 20 ALIGNMENT 0 Y12-17c19.q1k chr14 241 671 1973 1972 F 431 0.00 1275 reject_low 233 ALIGNMENT 270 Y12-17c19.q1k chr05 32 465 1481 1914 F 434 88.71 1275 reject_low 53 ALIGNMENT 0 Y12-17c19.q1k chr14 466 671 1802 1801 F 206 0.00 1275 reject_low 223 ALIGNMENT 0 Y12-17c19.q1k chr05 62 283 1481 1480 F 222 0.00 1275 reject_low 81 ALIGNMENT 28 Y12-17c19.q1k chr09 1 209 2170 2378 F 209 74.16 1275 reject_low 345 ALIGNMENT 24 Y12-17c19.q1k chr12 63 1 1076287 1076349 C 63 84.13 1275|3,0 reject_low 9 ALIGNMENT 57 Y12-17c19.q1k chr05 1 230 1810 2039 F 230 77.83 1275 reject_low 80 ALIGNMENT 0 Y12-17c19.q1k chr13 374 671 2091 2090 F 298 0.00 1275 reject_low 116 ALIGNMENT 0 Y12-17c19.q1k chr07 355 62 1089384 1089383 C 294 0.00 1275 reject_low 304 ALIGNMENT 0 Y12-17c19.q1k chr12 61 60 2191 7329 F 0 0.00 1275 reject_low 17 ALIGNMENT 148 Y12-17c19.q1k chr02 1 342 1826 2167 F 342 83.04 1275 reject_low 165 ALIGNMENT 0 Y12-17c19.q1k chr02 466 671 1966 1965 F 206 0.00 1275 reject_low 102 ALIGNMENT 158 Y12-17c19.q1k chr07 337 1 1088970 1089306 C 337 84.27 1275 reject_low 154 ALIGNMENT 0 Y12-17c19.q1k chr16 194 671 1907 1906 F 478 0.00 1275 reject_low 249 ALIGNMENT 122 Y12-17c19.q1k chr04 461 165 1530192 1530488 C 297 81.48 1275 reject_low 193 ALIGNMENT 0 Y12-17c19.q1k chr14 466 671 1946 1945 F 206 0.00 1275 reject_low 110 ALIGNMENT 137 Y12-17c19.q1k chr10 10 429 1947 2365 F 420 79.29 1275 reject_low 173 ALIGNMENT 244 Y12-17c19.q1k chr10 93 446 1669 2022 F 354 90.96 1275 reject_low 113 ALIGNMENT 55 Y12-17c19.q1k chr12 446 320 1069889 1070015 C 127 81.89 1275|0,9 reject_low 358 ALIGNMENT 0 Y12-17c19.q1k chr04 671 194 1530065 1530064 C 478 0.00 1275 reject_low 255 ALIGNMENT 0 Y12-17c19.q1k chr06 174 671 1261 1260 F 498 0.00 1275 reject_low 350 ALIGNMENT 0 Y12-17c19.q1k chr07 164 62 1089395 1089394 C 103 0.00 1275 reject_low 195 ALIGNMENT 0 Y12-17c19.q1k chr04 671 410 1530065 1530064 C 262 0.00 1275 reject_low 131 ALIGNMENT 24 Y12-17c19.q1k chr04 63 1 1530086 1530148 C 63 84.13 1275 reject_low 334 ALIGNMENT 72 Y12-17c19.q1k chr05 193 1 574893 575085 C 193 81.87 1275 reject_low 245 ALIGNMENT 41 Y12-17c19.q1k chr04 450 381 1530419 1530488 C 70 87.14 1275 reject_low 314 ALIGNMENT 111 Y12-17c19.q1k chr02 1 270 1898 2167 F 270 82.96 1275 reject_low 188 ALIGNMENT 47 Y12-17c19.q1k chr07 157 1 1088970 1089126 C 157 79.62 1275 reject_low 282 ALIGNMENT 0 Y12-17c19.q1k chr08 671 466 560470 560469 C 206 0.00 1275 reject_low 139 ALIGNMENT 0 Y12-17c19.q1k chr14 158 671 1998 1997 F 514 0.00 1275 reject_low 285 ALIGNMENT 132 Y12-17c19.q1k chr12 201 465 7326 7590 F 265 84.15 1275 reject_low 94 ALIGNMENT 0 Y12-17c19.q1k chr05 447 671 1715 1714 F 225 0.00 1275 reject_low 71 ALIGNMENT 0 Y12-17c19.q1k chr06 466 671 1049 1048 F 206 0.00 1275 reject_low 237 ALIGNMENT 69 Y12-17c19.q1k chr10 284 446 1680 1842 F 163 81.60 1275 reject_low 270 ALIGNMENT 0 Y12-17c19.q1k chr16 671 466 946051 946050 C 206 0.00 1275 reject_low 22 ALIGNMENT 261 Y12-17c19.p1k chr12 385 8 9546 9956 C 378 90.21 1274 reject_low 17,23,25,37,43,44,45,46,93,94,95,96,97,98,99 ALIGNMENT 0 Y12-17c19.q1k chr16 158 671 1907 1906 F 514 0.00 1275 reject_low 286 ALIGNMENT 0 Y12-17c19.q1k chr13 62 283 1678 1677 F 222 0.00 1275 reject_low 266 ALIGNMENT 0 Y12-17c19.q1k chr02 307 671 2167 2166 F 365 0.00 1275 reject_low 171 ALIGNMENT 0 Y12-17c19.q1k chr12 462 671 7622 7621 F 210 0.00 1275 reject_low 98 ALIGNMENT 104 Y12-17c19.q1k chr08 284 469 1662 1847 F 186 86.02 1275 reject_low 187 ALIGNMENT 196 Y12-17c19.q1k chr16 465 129 946158 946494 C 337 87.24 1275 reject_low 30 ALIGNMENT 64 Y12-17c19.q1k chr10 320 461 1680 1821 F 142 82.39 1275 reject_low 271 ALIGNMENT 737 Y12-17c19.p1k chr07 4 978 1085592 1086591 F 975 92.82 1274 reject_low 7 ALIGNMENT 0 Y12-17c19.q1k chr06 62 248 905 904 F 187 0.00 1275 reject_low 169 ALIGNMENT 55 Y12-17c19.q1k chr08 446 320 560704 560830 C 127 81.89 1275 reject_low 292 ALIGNMENT 0 Y12-17c19.q1k chr10 466 671 1933 1932 F 206 0.00 1275 reject_low 202 ALIGNMENT 0 Y12-17c19.p1k chr13 753 386 3888 3887 C 368 0.00 1274 reject_low 13 ALIGNMENT 0 Y12-17c19.q1k chr02 176 671 2180 2179 F 496 0.00 1275 reject_low 257 ALIGNMENT 97 Y12-17c19.q1k chr12 301 1 1076265 1076565 C 301 79.73 1275|9,0 reject_low 362 ALIGNMENT 0 Y12-17c19.q1k chr13 466 671 1931 1930 F 206 0.00 1275 reject_low 179 ALIGNMENT 0 Y12-17c19.q1k chr14 374 671 1998 1997 F 298 0.00 1275 reject_low 117 ALIGNMENT 77 Y12-17c19.q1k chr02 201 446 1486 1731 F 246 78.05 1275 reject_low 259 ALIGNMENT 55 Y12-17c19.q1k chr12 320 446 7337 7463 F 127 81.89 1275 reject_low 366 ALIGNMENT 0 Y12-17c19.q1k chr04 671 466 1530225 1530224 C 206 0.00 1275 reject_low 176 ALIGNMENT 69 Y12-17c19.q1k chr12 193 1 1076265 1076457 C 193 81.35 1275 reject_low 359 ALIGNMENT 34 Y12-17c19.q1k chr14 31 99 1908 1976 F 69 85.51 1275 reject_low 329 ALIGNMENT 0 Y12-17c19.q1k chr16 466 671 1819 1818 F 206 0.00 1275 reject_low 164 ALIGNMENT 0 Y12-17c19.q1k chr06 466 671 977 976 F 206 0.00 1275 reject_low 273 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 1875 1874 F 206 0.00 1275 reject_low 47 ALIGNMENT 218 Y12-17c19.q1k chr05 409 1 574893 575301 C 409 86.31 1275 reject_low 122 ALIGNMENT 538 Y12-17c19.q1k chr10 31 872 1931 2762 F 842 89.19 1275 ambiguous_tel 0 ALIGNMENT 25 Y12-17c19.q1k chr08 63 31 560439 560471 C 33 93.94 1275 reject_low 348 ALIGNMENT 0 Y12-17c19.q1k chr05 671 447 575181 575180 C 225 0.00 1275 reject_low 290 ALIGNMENT 0 Y12-17c19.q1k chr05 671 466 574946 574945 C 206 0.00 1275 reject_low 107 ALIGNMENT 524 Y12-17c19.q1k chr05 872 57 574500 575317 C 816 89.46 1275 reject_low 6 ALIGNMENT 0 Y12-17c19.q1k chr08 671 447 560561 560560 C 225 0.00 1275 reject_low 225 ALIGNMENT 122 Y12-17c19.q1k chr13 165 461 1667 1963 F 297 81.48 1275 reject_low 196 ALIGNMENT 167 Y12-17c19.q1k chr08 93 379 1651 1937 F 287 87.46 1275 reject_low 159 ALIGNMENT 0 Y12-17c19.q1k chr12 671 158 1069603 1069602 C 514 0.00 1275 reject_low 83 ALIGNMENT 0 Y12-17c19.q1k chr09 468 671 2312 2311 F 204 0.00 1275 reject_low 120 ALIGNMENT 0 Y12-17c19.q1k chr06 62 164 893 892 F 103 0.00 1275 reject_low 200 ALIGNMENT 0 Y12-17c19.q1k chr05 231 671 2039 2038 F 441 0.00 1275 reject_low 80 ALIGNMENT 0 Y12-17c19.q1k chr12 158 355 2216 7336 F 198 0.00 1275 reject_low 367 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 7590 7589 F 206 0.00 1275 reject_low 94 ALIGNMENT 0 Y12-17c19.q1k chr04 671 466 1530153 1530152 C 206 0.00 1275 reject_low 166 ALIGNMENT 0 Y12-17c19.q1k chr02 468 671 1932 1931 F 204 0.00 1275 reject_low 130 ALIGNMENT 0 Y12-17c19.q1k chr05 671 374 574894 574893 C 298 0.00 1275 reject_low 114 ALIGNMENT 524 Y12-17c19.q1k chr14 57 872 1574 2391 F 816 89.46 1275 ambiguous_tel 4 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1069799 1069798 C 206 0.00 1275 reject_low 361 ALIGNMENT 137 Y12-17c19.q1k chr09 10 429 1964 2382 F 420 79.29 1275 reject_low 172 ALIGNMENT 0 Y12-17c19.q1k chr09 466 671 2346 2345 F 206 0.00 1275 reject_low 133 ALIGNMENT 114 Y12-17c19.q1k chr02 232 446 1481 1695 F 215 85.12 1275 reject_low 203 ALIGNMENT 163 Y12-17c19.q1k chr05 129 465 1470 1806 F 337 83.98 1275 reject_low 62 ALIGNMENT 0 Y12-17c19.q1k chr12 671 447 1069890 1069889 C 225 0.00 1275 reject_low 358 ALIGNMENT 78 Y12-17c19.q1k chr08 193 1 560417 560609 C 193 82.90 1275 reject_low 229 ALIGNMENT 155 Y12-17c19.q1k chr12 337 1 1076265 1076601 C 337 83.98 1275|9,0 reject_low 358 ALIGNMENT 218 Y12-17c19.q1k chr13 1 409 1683 2091 F 409 86.31 1275 reject_low 124 ALIGNMENT 0 Y12-17c19.q1k chr12 671 194 1069603 1069602 C 478 0.00 1275 reject_low 77 ALIGNMENT 112 Y12-17c19.q1k chr08 301 1 560417 560717 C 301 81.40 1275 reject_low 189 ALIGNMENT 0 Y12-17c19.q1k chr12 231 230 1070032 1076264 C 2 0.00 1275 reject_low 361 ALIGNMENT 0 Y12-17c19.q1k chr06 322 671 1265 1264 F 350 0.00 1275 reject_low 227 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 1964 1963 F 225 0.00 1275 reject_low 39 ALIGNMENT 0 Y12-17c19.q1k chr16 62 319 1494 1493 F 258 0.00 1275 reject_low 295 ALIGNMENT 0 Y12-17c19.q1k chr12 462 671 1799 1798 F 210 0.00 1275 reject_low 297 ALIGNMENT 0 Y12-17c19.q1k chr13 62 231 1662 1661 F 170 0.00 1275 reject_low 222 ALIGNMENT 0 Y12-17c19.q1k chr12 62 231 1678 1677 F 170 0.00 1275 reject_low 42 ALIGNMENT 35 Y12-17c19.q1k chr08 31 163 1805 1937 F 133 77.44 1275 reject_low 332 ALIGNMENT 0 Y12-17c19.q1k chr08 671 447 560741 560740 C 225 0.00 1275 reject_low 306 ALIGNMENT 0 Y12-17c19.q1k chr02 447 671 1695 1694 F 225 0.00 1275 reject_low 203 ALIGNMENT 0 Y12-17c19.q1k chr16 671 338 945963 945962 C 334 0.00 1275 reject_low 34 ALIGNMENT 0 Y12-17c19.q1k chr05 62 200 1470 1469 F 139 0.00 1275 reject_low 71 ALIGNMENT 132 Y12-17c19.q1k chr16 201 465 1483 1747 F 265 84.15 1275 reject_low 181 ALIGNMENT 0 Y12-17c19.q1k chr10 468 671 2295 2294 F 204 0.00 1275 reject_low 121 ALIGNMENT 78 Y12-17c19.q1k chr04 229 31 1530064 1530262 C 199 81.91 1275 reject_low 254 ALIGNMENT 0 Y12-17c19.q1k chr10 447 671 1878 1877 F 225 0.00 1275 reject_low 253 ALIGNMENT 157 Y12-17c19.q1k chr16 1 337 1571 1907 F 337 84.27 1275 reject_low 157 ALIGNMENT 242 Y12-17c19.q1k chr04 465 93 1530116 1530488 C 373 89.54 1275 reject_low 112 ALIGNMENT 527 Y12-17c19.q1k chr12 57 872 7326 8143 F 816 89.58 1275|4,0 reject_low 17 ALIGNMENT 0 Y12-17c19.q1k chr16 671 451 946462 946461 C 221 0.00 1275 reject_low 355 ALIGNMENT 0 Y12-17c19.q1k chr10 430 671 2365 2364 F 242 0.00 1275 reject_low 173 ALIGNMENT 157 Y12-17c19.q1k chr13 1 337 1755 2091 F 337 84.27 1275 reject_low 155 ALIGNMENT 49 Y12-17c19.q1k chr05 446 356 575216 575306 C 91 85.71 1275 reject_low 303 ALIGNMENT 0 Y12-17c19.q1k chr02 248 671 2180 2179 F 424 0.00 1275 reject_low 201 ALIGNMENT 378 Y12-17c19.q1k chr06 93 872 893 1645 F 780 84.87 1275 reject_low 16 ALIGNMENT 0 Y12-17c19.q1k chr07 671 410 1088971 1088970 C 262 0.00 1275 reject_low 123 ALIGNMENT 160 Y12-17c19.q1k chr16 129 465 1483 1819 F 337 83.68 1275 reject_low 164 ALIGNMENT 450 Y12-17c19.q1k chr08 165 830 1651 2298 F 666 90.99 1275 reject_low 15 ALIGNMENT 0 Y12-17c19.q1k chr12 451 671 1896 1895 F 221 0.00 1275 reject_low 42 ALIGNMENT 0 Y12-17c19.q1k chr16 92 62 946495 946494 C 31 0.00 1275 reject_low 21 ALIGNMENT 49 Y12-17c19.q1k chr16 356 446 1494 1584 F 91 85.71 1275 reject_low 309 ALIGNMENT 207 Y12-17c19.q1k chr10 1 465 1865 2329 F 465 83.23 1275 reject_low 134 ALIGNMENT 122 Y12-17c19.q1k chr12 461 165 1069730 1070026 C 297 81.48 1275 reject_low 363 ALIGNMENT 0 Y12-17c19.q1k chr05 447 671 1571 1570 F 225 0.00 1275 reject_low 87 ALIGNMENT 100 Y12-17c19.q1k chr12 1 301 7450 7750 F 301 80.07 1275 reject_low 43 ALIGNMENT 0 Y12-17c19.q1k chr09 62 392 1842 1841 F 331 0.00 1275 reject_low 349 ALIGNMENT 20 Y12-17c19.q1k chr05 428 450 1481 1503 F 23 95.65 1275 reject_low 92 ALIGNMENT 0 Y12-17c19.q1k chr10 462 671 1965 1964 F 210 0.00 1275 reject_low 170 ALIGNMENT 72 Y12-17c19.q1k chr05 446 284 575144 575306 C 163 82.21 1275 reject_low 263 ALIGNMENT 0 Y12-17c19.q1k chr02 271 671 2167 2166 F 401 0.00 1275 reject_low 188 ALIGNMENT 0 Y12-17c19.q1k chr04 671 466 1530261 1530260 C 206 0.00 1275 reject_low 218 ALIGNMENT 0 Y12-17c19.q1k chr12 671 374 1069603 1069602 C 298 0.00 1275 reject_low 55 ALIGNMENT 0 Y12-17c19.q1k chr12 194 671 7750 7749 F 478 0.00 1275 reject_low 46 ALIGNMENT 57 Y12-17c19.q1k chr09 285 465 1842 2022 F 181 77.90 1275 reject_low 277 ALIGNMENT 81 Y12-17c19.q1k chr13 1 240 1827 2066 F 240 80.83 1275 reject_low 232 ALIGNMENT 209 Y12-17c19.q1k chr02 93 465 1486 1858 F 373 86.60 1275 reject_low 140 ALIGNMENT 260 Y12-17c19.p1k chr16 4 385 943750 944166 F 382 90.05 1274 reject_low 11,18,21,22,27,28,29,30,34,38,40,41 ALIGNMENT 94 Y12-17c19.q1k chr12 232 465 7321 7554 F 234 80.77 1275|5,0 reject_low 96 ALIGNMENT 203 Y12-17c19.q1k chr10 1 467 1793 2259 F 467 82.87 1275 reject_low 136 ALIGNMENT 0 Y12-17c19.q1k chr08 62 92 1651 1650 F 31 0.00 1275 reject_low 159 ALIGNMENT 97 Y12-17c19.q1k chr12 301 1 1069602 1069902 C 301 79.73 1275 reject_low 70 ALIGNMENT 34 Y12-17c19.q1k chr04 99 31 1530086 1530154 C 69 85.51 1275 reject_low 324 ALIGNMENT 0 Y12-17c19.q1k chr07 671 64 1088993 1088992 C 608 0.00 1275 reject_low 336 ALIGNMENT 0 Y12-17c19.q1k chr12 194 200 2216 7325 F 7 0.00 1275 reject_low 94 ALIGNMENT 31 Y12-17c19.q1k chr10 381 446 1669 1734 F 66 83.33 1275 reject_low 347 ALIGNMENT 0 Y12-17c19.q1k chr08 671 466 560614 560613 C 206 0.00 1275 reject_low 221 ALIGNMENT 193 Y12-17c19.q1k chr12 129 465 1683 2019 F 337 86.94 1275 reject_low 35 ALIGNMENT 245 Y12-17c19.q1k chr16 93 465 1483 1855 F 373 89.81 1275 reject_low 111 ALIGNMENT 0 Y12-17c19.q1k chr14 64 671 1976 1975 F 608 0.00 1275 reject_low 340 ALIGNMENT 0 Y12-17c19.q1k chr13 451 671 1736 1735 F 221 0.00 1275 reject_low 318 ALIGNMENT 0 Y12-17c19.q1k chr10 62 319 1680 1679 F 258 0.00 1275 reject_low 271 ALIGNMENT 0 Y12-17c19.q1k chr08 671 374 560418 560417 C 298 0.00 1275 reject_low 104 ALIGNMENT 24 Y12-17c19.q1k chr05 63 1 574915 574977 C 63 84.13 1275 reject_low 335 ALIGNMENT 127 Y12-17c19.q1k chr09 249 446 1842 2039 F 198 88.89 1275 reject_low 186 ALIGNMENT 0 Y12-17c19.q1k chr16 466 671 1747 1746 F 206 0.00 1275 reject_low 181 ALIGNMENT 122 Y12-17c19.q1k chr12 461 165 1076393 1076689 C 297 81.48 1275 reject_low 68 ALIGNMENT 58 Y12-17c19.q1k chr09 357 465 1842 1950 F 109 85.32 1275 reject_low 272 ALIGNMENT 29 Y12-17c19.q1k chr02 31 67 2144 2180 F 37 94.59 1275 reject_low 343 ALIGNMENT 0 Y12-17c19.q1k chr10 466 671 2329 2328 F 206 0.00 1275 reject_low 134 ALIGNMENT 0 Y12-17c19.q1k chr13 62 355 1678 1677 F 294 0.00 1275 reject_low 307 ALIGNMENT 40 Y12-17c19.q1k chr09 31 230 2164 2363 F 200 75.50 1275 reject_low 322 ALIGNMENT 55 Y12-17c19.q1k chr16 320 446 1494 1620 F 127 81.89 1275 reject_low 295 ALIGNMENT 0 Y12-17c19.q1k chr04 671 302 1530065 1530064 C 370 0.00 1275 reject_low 213 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1076462 1076461 C 206 0.00 1275 reject_low 73 ALIGNMENT 0 Y12-17c19.q1k chr12 671 447 1076553 1076552 C 225 0.00 1275 reject_low 82 ALIGNMENT 160 Y12-17c19.q1k chr13 129 465 1667 2003 F 337 83.68 1275 reject_low 162 ALIGNMENT 0 Y12-17c19.q1k chr10 62 92 1669 1668 F 31 0.00 1275 reject_low 113 ALIGNMENT 0 Y12-17c19.q1k chr16 671 230 945963 945962 C 442 0.00 1275 reject_low 244 ALIGNMENT 84 Y12-17c19.q1k chr02 284 455 1497 1668 F 172 83.72 1275 reject_low 238 ALIGNMENT 149 Y12-17c19.q1k chr16 446 165 946213 946494 C 282 85.46 1275 reject_low 38 ALIGNMENT 0 Y12-17c19.p1k chr12 62 871 1067125 1067124 F 810 0.00 1274 reject_low 54,55,56,57,61,63,65,68,70,73,74,75,77,79,82,83,84,88,89,90,356,357,358,359,360,361,362,363,364,365 ALIGNMENT 0 Y12-17c19.q1k chr13 64 671 2069 2068 F 608 0.00 1275 reject_low 339 ALIGNMENT 0 Y12-17c19.q1k chr14 62 164 1574 1573 F 103 0.00 1275 reject_low 197 ALIGNMENT 0 Y12-17c19.q1k chr09 322 671 2382 2381 F 350 0.00 1275 reject_low 211 ALIGNMENT 56 Y12-17c19.q1k chr10 356 461 1680 1785 F 106 84.91 1275 reject_low 274 ALIGNMENT 0 Y12-17c19.p1k chr08 386 753 558619 558618 F 368 0.00 1274 reject_low 14 ALIGNMENT 0 Y12-17c19.q1k chr05 286 671 2058 2057 F 386 0.00 1275 reject_low 76 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 7662 7661 F 206 0.00 1275 reject_low 95 ALIGNMENT 0 Y12-17c19.q1k chr12 671 64 1069625 1069624 C 608 0.00 1275 reject_low 90 ALIGNMENT 0 Y12-17c19.q1k chr12 62 319 1694 1693 F 258 0.00 1275 reject_low 49 ALIGNMENT 97 Y12-17c19.q1k chr04 301 1 1530064 1530364 C 301 79.73 1275 reject_low 213 ALIGNMENT 104 Y12-17c19.q1k chr05 201 446 1470 1715 F 246 81.71 1275 reject_low 71 ALIGNMENT 0 Y12-17c19.q1k chr08 447 671 1752 1751 F 225 0.00 1275 reject_low 305 ALIGNMENT 0 Y12-17c19.q1k chr08 64 671 1909 1908 F 608 0.00 1275 reject_low 337 ALIGNMENT 0 Y12-17c19.q1k chr10 62 355 1680 1679 F 294 0.00 1275 reject_low 274 ALIGNMENT 0 Y12-17c19.q1k chr05 62 355 1481 1480 F 294 0.00 1275 reject_low 87 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 1820 1819 F 225 0.00 1275 reject_low 49 ALIGNMENT 0 Y12-17c19.q1k chr04 671 451 1530420 1530419 C 221 0.00 1275 reject_low 314 ALIGNMENT 0 Y12-17c19.q1k chr07 671 230 1088971 1088970 C 442 0.00 1275 reject_low 240 ALIGNMENT 132 Y12-17c19.q1k chr07 465 201 1089130 1089394 C 265 84.15 1275 reject_low 178 ALIGNMENT 0 Y12-17c19.q1k chr13 62 128 1667 1666 F 67 0.00 1275 reject_low 162 ALIGNMENT 223 Y12-17c19.q1k chr14 1 373 1626 1998 F 373 88.47 1275 reject_low 117 ALIGNMENT 0 Y12-17c19.q1k chr16 283 62 946484 946483 C 222 0.00 1275 reject_low 252 ALIGNMENT 0 Y12-17c19.q1k chr02 62 355 1497 1496 F 294 0.00 1275 reject_low 301 ALIGNMENT 0 Y12-17c19.q1k chr12 62 164 1683 1682 F 103 0.00 1275 reject_low 39 ALIGNMENT 24 Y12-17c19.q1k chr12 1 63 2131 2193 F 63 84.13 1275|0,3 reject_low 17 ALIGNMENT 0 Y12-17c19.q1k chr10 231 671 2346 2345 F 441 0.00 1275 reject_low 323 ALIGNMENT 28 Y12-17c19.q1k chr06 1 209 1053 1261 F 209 74.16 1275 reject_low 344 ALIGNMENT 0 Y12-17c19.q1k chr02 62 92 1486 1485 F 31 0.00 1275 reject_low 140 ALIGNMENT 0 Y12-17c19.q1k chr16 338 671 1907 1906 F 334 0.00 1275 reject_low 157 ALIGNMENT 94 Y12-17c19.q1k chr08 465 232 560613 560846 C 234 80.77 1275 reject_low 221 ALIGNMENT 206 Y12-17c19.q1k chr12 57 461 1683 2087 F 405 84.94 1275 reject_low 31 ALIGNMENT 20 Y12-17c19.q1k chr06 1 173 1089 1261 F 173 73.41 1275 reject_low 350 ALIGNMENT 55 Y12-17c19.q1k chr05 446 320 575180 575306 C 127 81.89 1275 reject_low 290 ALIGNMENT 55 Y12-17c19.q1k chr12 446 320 1076552 1076678 C 127 81.89 1275 reject_low 82 ALIGNMENT 245 Y12-17c19.q1k chr13 93 465 1667 2039 F 373 89.81 1275 reject_low 109 ALIGNMENT 0 Y12-17c19.q1k chr16 462 671 1779 1778 F 210 0.00 1275 reject_low 198 ALIGNMENT 0 Y12-17c19.q1k chr05 62 427 1481 1480 F 366 0.00 1275 reject_low 92 ALIGNMENT 0 Y12-17c19.q1k chr12 96 97 1070023 1076289 C 0 0.00 1275 reject_low 357 ALIGNMENT 49 Y12-17c19.q1k chr13 356 446 1678 1768 F 91 85.71 1275 reject_low 307 ALIGNMENT 0 Y12-17c19.q1k chr07 671 466 1089167 1089166 C 206 0.00 1275 reject_low 220 ALIGNMENT 230 Y12-17c19.q1k chr12 93 465 1683 2055 F 373 88.47 1275 reject_low 24 ALIGNMENT 0 Y12-17c19.q1k chr12 164 62 1076690 1076689 C 103 0.00 1275 reject_low 68 ALIGNMENT 69 Y12-17c19.q1k chr12 193 1 1069602 1069794 C 193 81.35 1275 reject_low 77 ALIGNMENT 0 Y12-17c19.q1k chr10 462 671 2109 2108 F 210 0.00 1275 reject_low 100 ALIGNMENT 0 Y12-17c19.q1k chr09 62 284 1842 1841 F 223 0.00 1275 reject_low 277 ALIGNMENT 78 Y12-17c19.q1k chr12 240 1 1076290 1076529 C 240 80.42 1275 reject_low 364 ALIGNMENT 148 Y12-17c19.q1k chr02 1 414 1754 2167 F 414 80.43 1275 reject_low 168 ALIGNMENT 24 Y12-17c19.q1k chr12 63 1 1069624 1069686 C 63 84.13 1275 reject_low 90 ALIGNMENT 0 Y12-17c19.q1k chr08 62 319 1662 1661 F 258 0.00 1275 reject_low 256 ALIGNMENT 0 Y12-17c19.q1k chr05 466 671 2022 2021 F 206 0.00 1275 reject_low 52 ALIGNMENT 34 Y12-17c19.q1k chr05 99 31 574915 574983 C 69 85.51 1275 reject_low 325 ALIGNMENT 49 Y12-17c19.q1k chr04 446 356 1530387 1530477 C 91 85.71 1275 reject_low 302 ALIGNMENT 54 Y12-17c19.q1k chr10 1 285 2081 2365 F 285 75.44 1275 reject_low 280 ALIGNMENT 0 Y12-17c19.q1k chr13 62 200 1667 1666 F 139 0.00 1275 reject_low 179 ALIGNMENT 0 Y12-17c19.q1k chr12 671 410 1076266 1076265 C 262 0.00 1275 reject_low 57 ALIGNMENT 0 Y12-17c19.q1k chr13 230 671 2091 2090 F 442 0.00 1275 reject_low 241 ALIGNMENT 170 Y12-17c19.q1k chr09 141 465 1842 2166 F 325 85.23 1275 reject_low 152 ALIGNMENT 0 Y12-17c19.q1k chr10 462 671 2073 2072 F 210 0.00 1275 reject_low 105 ALIGNMENT 0 Y12-17c19.q1k chr09 466 671 1950 1949 F 206 0.00 1275 reject_low 272 ALIGNMENT 86 Y12-17c19.q1k chr16 446 201 946249 946494 C 246 79.27 1275 reject_low 251 ALIGNMENT 40 Y12-17c19.q1k chr06 31 230 1047 1246 F 200 75.50 1275 reject_low 321 ALIGNMENT 41 Y12-17c19.q1k chr13 381 450 1667 1736 F 70 87.14 1275 reject_low 318 ALIGNMENT 0 Y12-17c19.q1k chr16 671 447 946250 946249 C 225 0.00 1275 reject_low 251 ALIGNMENT 0 Y12-17c19.q1k chr16 302 671 1907 1906 F 370 0.00 1275 reject_low 209 ALIGNMENT 0 Y12-17c19.q1k chr12 374 671 7750 7749 F 298 0.00 1275 reject_low 23 ALIGNMENT 72 Y12-17c19.q1k chr14 1 193 1806 1998 F 193 81.87 1275 reject_low 248 ALIGNMENT 223 Y12-17c19.q1k chr07 373 1 1088970 1089342 C 373 88.47 1275 reject_low 115 ALIGNMENT 78 Y12-17c19.q1k chr12 240 1 1069627 1069866 C 240 80.42 1275 reject_low 74 ALIGNMENT 54 Y12-17c19.q1k chr02 31 139 2072 2180 F 109 85.32 1275 reject_low 275 ALIGNMENT 0 Y12-17c19.q1k chr08 100 671 1909 1908 F 572 0.00 1275 reject_low 333 ALIGNMENT 0 Y12-17c19.q1k chr09 466 671 2202 2201 F 206 0.00 1275 reject_low 137 ALIGNMENT 170 Y12-17c19.q1k chr16 337 1 945962 946298 C 337 85.46 1275 reject_low 34 ALIGNMENT 0 Y12-17c19.q1k chr05 671 466 574982 574981 C 206 0.00 1275 reject_low 160 ALIGNMENT 0 Y12-17c19.q1k chr05 671 230 574894 574893 C 442 0.00 1275 reject_low 239 ALIGNMENT 0 Y12-17c19.q1k chr05 231 62 575323 575322 C 170 0.00 1275 reject_low 219 ALIGNMENT 0 Y12-17c19.q1k chr04 671 374 1530065 1530064 C 298 0.00 1275 reject_low 119 ALIGNMENT 100 Y12-17c19.q1k chr05 301 1 574893 575193 C 301 80.07 1275 reject_low 205 ALIGNMENT 0 Y12-17c19.q1k chr04 671 447 1530388 1530387 C 225 0.00 1275 reject_low 302 ALIGNMENT 0 Y12-17c19.q1k chr13 62 164 1667 1666 F 103 0.00 1275 reject_low 196 ALIGNMENT 94 Y12-17c19.q1k chr12 465 232 1069798 1070031 C 234 80.77 1275 reject_low 361 ALIGNMENT 0 Y12-17c19.q1k chr10 451 671 2206 2205 F 221 0.00 1275 reject_low 135 ALIGNMENT 0 Y12-17c19.q1k chr08 671 410 560418 560417 C 262 0.00 1275 reject_low 106 ALIGNMENT 142 Y12-17c19.q1k chr09 31 389 2020 2378 F 359 81.34 1275 reject_low 174 ALIGNMENT 94 Y12-17c19.q1k chr14 232 465 1569 1802 F 234 80.77 1275 reject_low 223 ALIGNMENT 99 Y12-17c19.q1k chr10 1 321 2045 2365 F 321 79.13 1275 reject_low 212 ALIGNMENT 0 Y12-17c19.q1k chr02 466 671 1822 1821 F 206 0.00 1275 reject_low 149 ALIGNMENT 47 Y12-17c19.q1k chr12 1 157 2059 2215 F 157 79.62 1275 reject_low 98,366,367 ALIGNMENT 0 Y12-17c19.q1k chr14 62 380 1574 1573 F 319 0.00 1275 reject_low 319 ALIGNMENT 0 Y12-17c19.q1k chr06 62 200 893 892 F 139 0.00 1275 reject_low 184 ALIGNMENT 218 Y12-17c19.q1k chr07 409 1 1088970 1089378 C 409 86.31 1275 reject_low 123 ALIGNMENT 0 Y12-17c19.q1k chr12 364 365 1070007 1076273 C 0 0.00 1275 reject_low 356 ALIGNMENT 0 Y12-17c19.q1k chr14 447 671 1711 1710 F 225 0.00 1275 reject_low 294 ALIGNMENT 182 Y12-17c19.q1k chr08 337 1 560417 560753 C 337 86.65 1275 reject_low 144 ALIGNMENT 0 Y12-17c19.q1k chr02 62 380 1486 1485 F 319 0.00 1275 reject_low 313 ALIGNMENT 0 Y12-17c19.q1k chr14 462 671 1870 1869 F 210 0.00 1275 reject_low 197 ALIGNMENT 798 Y12-17c19.p1k chr09 991 8 4754 5760 C 984 94.82 1274 ambiguous_tel 1 ALIGNMENT 0 Y12-17c19.q1k chr08 466 671 1807 1806 F 206 0.00 1275 reject_low 256 ALIGNMENT 0 Y12-17c19.q1k chr08 62 283 1662 1661 F 222 0.00 1275 reject_low 187 ALIGNMENT 78 Y12-17c19.q1k chr04 240 1 1530089 1530328 C 240 80.42 1275 reject_low 236 ALIGNMENT 0 Y12-17c19.q1k chr08 671 447 560705 560704 C 225 0.00 1275 reject_low 292 ALIGNMENT 242 Y12-17c19.q1k chr08 409 1 560417 560825 C 409 88.26 1275 reject_low 106 ALIGNMENT 0 Y12-17c19.q1k chr16 100 671 1885 1884 F 572 0.00 1275 reject_low 330 ALIGNMENT 223 Y12-17c19.q1k chr16 1 373 1535 1907 F 373 88.47 1275 reject_low 118 ALIGNMENT 0 Y12-17c19.q1k chr12 671 447 1069854 1069853 C 225 0.00 1275 reject_low 362,364 ALIGNMENT 0 Y12-17c19.q1k chr16 671 158 945963 945962 C 514 0.00 1275 reject_low 287 ALIGNMENT 0 Y12-17c19.q1k chr12 671 410 1069603 1069602 C 262 0.00 1275 reject_low 56 ALIGNMENT 79 Y12-17c19.q1k chr12 284 465 1694 1875 F 182 81.87 1275 reject_low 47 ALIGNMENT 157 Y12-17c19.q1k chr14 1 337 1662 1998 F 337 84.27 1275 reject_low 156 ALIGNMENT 524 Y12-17c19.q1k chr16 57 872 1483 2300 F 816 89.46 1275 ambiguous_tel 5 ALIGNMENT 202 Y12-17c19.q1k chr12 31 373 1873 2215 F 343 87.76 1275 reject_low 33 ALIGNMENT 24 Y12-17c19.q1k chr14 1 63 1914 1976 F 63 84.13 1275 reject_low 340 ALIGNMENT 0 Y12-17c19.q1k chr12 283 241 1070016 1076289 C 43 0.00 1275 reject_low 364 ALIGNMENT 81 Y12-17c19.q1k chr16 1 240 1643 1882 F 240 80.83 1275 reject_low 234 ALIGNMENT 0 Y12-17c19.q1k chr12 283 62 1076679 1076678 C 222 0.00 1275 reject_low 79 ALIGNMENT 34 Y12-17c19.q1k chr07 99 31 1088992 1089060 C 69 85.51 1275 reject_low 326 ALIGNMENT 0 Y12-17c19.q1k chr16 62 380 1483 1482 F 319 0.00 1275 reject_low 320 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 1748 1747 F 225 0.00 1275 reject_low 311 ALIGNMENT 0 Y12-17c19.q1k chr16 671 447 946214 946213 C 225 0.00 1275 reject_low 38 ALIGNMENT 0 Y12-17c19.q1k chr08 671 451 560773 560772 C 221 0.00 1275 reject_low 317 ALIGNMENT 0 Y12-17c19.q1k chr07 671 158 1088971 1088970 C 514 0.00 1275 reject_low 282 ALIGNMENT 0 Y12-17c19.q1k chr06 430 671 1265 1264 F 242 0.00 1275 reject_low 260 ALIGNMENT 0 Y12-17c19.q1k chr12 671 466 1076354 1076353 C 206 0.00 1275 reject_low 63 ALIGNMENT 0 Y12-17c19.p1k chr16 386 753 944166 944165 F 368 0.00 1274 reject_low 11,18,21,22,27,28,29,30,34,38,40,41 ALIGNMENT 0 Y12-17c19.q1k chr09 62 320 1842 1841 F 259 0.00 1275 reject_low 258 ALIGNMENT 0 Y12-17c19.q1k chr13 158 671 2091 2090 F 514 0.00 1275 reject_low 284 ALIGNMENT 0 Y12-17c19.q1k chr12 302 671 7750 7749 F 370 0.00 1275 reject_low 43 ALIGNMENT 115 Y12-17c19.q1k chr12 232 450 1678 1896 F 219 84.93 1275 reject_low 42 ALIGNMENT 49 Y12-17c19.q1k chr07 446 356 1089293 1089383 C 91 85.71 1275 reject_low 304 ALIGNMENT 149 Y12-17c19.q1k chr10 165 461 1669 1965 F 297 84.51 1275 reject_low 170 ALIGNMENT 40 Y12-17c19.q1k chr02 1 103 2078 2180 F 103 83.50 1275 reject_low 300 ALIGNMENT 0 Y12-17c19.q1k chr05 92 62 575318 575317 C 31 0.00 1275 reject_low 107 ALIGNMENT 749 Y12-17c19.p1k chr05 4 978 571515 572514 F 975 93.23 1274 reject_low 6 ALIGNMENT 34 Y12-17c19.q1k chr12 31 99 7660 7728 F 69 85.51 1275 reject_low 327 ALIGNMENT 132 Y12-17c19.q1k chr05 1 389 1666 2054 F 389 79.95 1275 reject_low 64 ALIGNMENT 245 Y12-17c19.q1k chr14 93 465 1574 1946 F 373 89.81 1275 reject_low 110 ALIGNMENT 0 Y12-17c19.q1k chr07 128 62 1089395 1089394 C 67 0.00 1275 reject_low 161 ALIGNMENT 160 Y12-17c19.q1k chr12 129 465 7326 7662 F 337 83.68 1275 reject_low 95 ALIGNMENT 215 Y12-17c19.q1k chr08 465 93 560469 560841 C 373 87.13 1275 reject_low 139 ALIGNMENT 157 Y12-17c19.q1k chr04 465 129 1530152 1530488 C 337 83.38 1275 reject_low 166 ALIGNMENT 203 Y12-17c19.q1k chr02 1 461 1718 2178 F 461 83.08 1275 reject_low 138 ALIGNMENT 56 Y12-17c19.q1k chr06 381 465 893 977 F 85 89.41 1275 reject_low 273 ALIGNMENT 313 Y12-17c19.q1k chr16 465 1 946014 946478 C 465 90.75 1275 reject_low 18 ALIGNMENT 0 Y12-17c19.q1k chr08 62 164 1651 1650 F 103 0.00 1275 reject_low 15 ALIGNMENT 0 Y12-17c19.q1k chr07 231 62 1089400 1089399 C 170 0.00 1275 reject_low 220 ALIGNMENT 81 Y12-17c19.q1k chr14 31 229 1800 1998 F 199 82.41 1275 reject_low 242 ALIGNMENT 0 Y12-17c19.q1k chr05 451 671 1755 1754 F 221 0.00 1275 reject_low 66 ALIGNMENT 249 Y12-17c19.q1k chr10 1 465 1685 2149 F 465 86.24 1275 reject_low 103 ALIGNMENT 34 Y12-17c19.q1k chr12 99 31 1076287 1076355 C 69 85.51 1275|3,0 reject_low 357,360,365 ALIGNMENT 326 Y12-17c19.q1k chr10 32 461 1680 2109 F 430 93.26 1275 reject_low 100 ALIGNMENT 49 Y12-17c19.q1k chr12 446 356 1076588 1076678 C 91 85.71 1275 reject_low 84 ALIGNMENT 0 Y12-17c19.q1k chr05 200 62 575318 575317 C 139 0.00 1275 reject_low 177 ALIGNMENT 94 Y12-17c19.q1k chr13 232 465 1662 1895 F 234 80.77 1275 reject_low 222 ALIGNMENT 103 Y12-17c19.q1k chr02 1 247 1934 2180 F 247 83.40 1275 reject_low 201 ALIGNMENT 187 Y12-17c19.q1k chr05 93 461 1470 1838 F 369 84.82 1275 reject_low 59 ALIGNMENT 0 Y12-17c19.q1k chr02 62 128 1486 1485 F 67 0.00 1275 reject_low 149 ALIGNMENT 72 Y12-17c19.q1k chr12 1 193 2023 2215 F 193 81.87 1275 reject_low 94 ALIGNMENT 81 Y12-17c19.q1k chr12 31 229 2017 2215 F 199 82.41 1275 reject_low 99 ALIGNMENT 0 Y12-17c19.q1k chr06 468 671 1159 1158 F 204 0.00 1275 reject_low 184 ALIGNMENT 54 Y12-17c19.q1k chr06 1 285 981 1265 F 285 75.44 1275 reject_low 278 ALIGNMENT 0 Y12-17c19.q1k chr08 671 194 560418 560417 C 478 0.00 1275 reject_low 229 ALIGNMENT 0 Y12-17c19.q1k chr16 671 194 945963 945962 C 478 0.00 1275 reject_low 250 ALIGNMENT 0 Y12-17c19.q1k chr08 283 62 560831 560830 C 222 0.00 1275 reject_low 265 ALIGNMENT 0 Y12-17c19.q1k chr02 466 671 1858 1857 F 206 0.00 1275 reject_low 140 ALIGNMENT 0 Y12-17c19.q1k chr12 355 62 1076679 1076678 C 294 0.00 1275 reject_low 84 ALIGNMENT 259 Y12-17c19.q1k chr05 1 465 1558 2022 F 465 86.88 1275 reject_low 52 ALIGNMENT 0 Y12-17c19.q1k chr12 200 62 1076690 1076689 C 139 0.00 1275 reject_low 65 ALIGNMENT 0 Y12-17c19.q1k chr02 343 671 2167 2166 F 329 0.00 1275 reject_low 165 ALIGNMENT 192 Y12-17c19.q1k chr09 33 467 1842 2276 F 435 82.76 1275 reject_low 142 ALIGNMENT 0 Y12-17c19.q1k chr08 462 671 1731 1730 F 210 0.00 1275 reject_low 296 ALIGNMENT 0 Y12-17c19.q1k chr06 390 671 1261 1260 F 282 0.00 1275 reject_low 226 ALIGNMENT 55 Y12-17c19.q1k chr02 320 446 1497 1623 F 127 81.89 1275 reject_low 288 ALIGNMENT 0 Y12-17c19.q1k chr02 447 671 1623 1622 F 225 0.00 1275 reject_low 288 ALIGNMENT 0 Y12-17c19.q1k chr12 62 283 1694 1693 F 222 0.00 1275 reject_low 47 ALIGNMENT 41 Y12-17c19.q1k chr12 381 450 7326 7395 F 70 87.14 1275 reject_low 368 ALIGNMENT 215 Y12-17c19.q1k chr12 409 1 1076265 1076673 C 409 86.06 1275 reject_low 57 ALIGNMENT 0 Y12-17c19.q1k chr10 62 380 1669 1668 F 319 0.00 1275 reject_low 347 ALIGNMENT 0 Y12-17c19.q1k chr12 62 355 1694 1693 F 294 0.00 1275 reject_low 297 ALIGNMENT 41 Y12-17c19.q1k chr02 381 450 1486 1555 F 70 87.14 1275 reject_low 313 ALIGNMENT 81 Y12-17c19.q1k chr07 229 31 1088970 1089168 C 199 82.41 1275 reject_low 240 ALIGNMENT 0 Y12-17c19.q1k chr05 671 466 575090 575089 C 206 0.00 1275 reject_low 219 ALIGNMENT 0 Y12-17c19.q1k chr07 283 62 1089384 1089383 C 222 0.00 1275 reject_low 264 ALIGNMENT 0 Y12-17c19.q1k chr06 468 671 1195 1194 F 204 0.00 1275 reject_low 200 ALIGNMENT 49 Y12-17c19.q1k chr08 381 461 1651 1731 F 81 87.65 1275 reject_low 296 ALIGNMENT 220 Y12-17c19.q1k chr04 373 1 1530064 1530436 C 373 88.20 1275 reject_low 119 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 7499 7498 F 225 0.00 1275 reject_low 97,99 ALIGNMENT 100 Y12-17c19.q1k chr16 1 301 1607 1907 F 301 80.07 1275 reject_low 209 ALIGNMENT 211 Y12-17c19.q1k chr10 2 467 1758 2223 F 466 83.48 1275 reject_low 127 ALIGNMENT 0 Y12-17c19.q1k chr07 671 462 1089099 1089098 C 210 0.00 1275 reject_low 195 ALIGNMENT 0 Y12-17c19.q1k chr12 671 100 1069625 1069624 C 572 0.00 1275 reject_low 89 ALIGNMENT 0 Y12-17c19.q1k chr04 164 62 1530489 1530488 C 103 0.00 1275 reject_low 193 ALIGNMENT 24 Y12-17c19.q1k chr07 63 1 1088992 1089054 C 63 84.13 1275 reject_low 336 ALIGNMENT 93 Y12-17c19.q1k chr08 240 1 560442 560681 C 240 82.50 1275 reject_low 214 ALIGNMENT 132 Y12-17c19.q1k chr04 465 201 1530224 1530488 C 265 84.15 1275 reject_low 176 ALIGNMENT 158 Y12-17c19.q1k chr05 337 1 574893 575229 C 337 84.27 1275 reject_low 153 ALIGNMENT 0 Y12-17c19.q1k chr09 358 671 2382 2381 F 314 0.00 1275 reject_low 190 ALIGNMENT 94 Y12-17c19.q1k chr07 465 232 1089166 1089399 C 234 80.77 1275 reject_low 220 ALIGNMENT 0 Y12-17c19.q1k chr12 447 671 7427 7426 F 225 0.00 1275 reject_low 367 ALIGNMENT 0 Y12-17c19.q1k chr08 319 62 560831 560830 C 258 0.00 1275 reject_low 292 ALIGNMENT 563 Y12-17c19.q1k chr12 1 872 1735 2608 F 872 89.68 1275 reject_low 12 ALIGNMENT 51 Y12-17c19.p1k chr12 872 978 1067125 1067223 F 107 87.85 1274 reject_low 9,54,55,56,57,61,63,65,68,70,73,74,75,77,79,82,83,84,88,89,90,356,357,358,359,360,361,362,363,364,365 ALIGNMENT 0 Y12-17c19.q1k chr05 671 100 574916 574915 C 572 0.00 1275 reject_low 325 ALIGNMENT 99 Y12-17c19.q1k chr05 232 446 1465 1679 F 215 82.79 1275 reject_low 72 ALIGNMENT 117 Y12-17c19.q1k chr09 213 461 1842 2090 F 249 83.13 1275 reject_low 199 ALIGNMENT 0 Y12-17c19.q1k chr07 319 62 1089384 1089383 C 258 0.00 1275 reject_low 291 ALIGNMENT 0 Y12-17c19.q1k chr02 62 231 1481 1480 F 170 0.00 1275 reject_low 203 ALIGNMENT 252 Y12-17c19.p1k chr08 4 385 558204 558619 F 382 89.27 1274 reject_low 14 ALIGNMENT 31 Y12-17c19.q1k chr08 31 99 1841 1909 F 69 84.06 1275 reject_low 333 ALIGNMENT 0 Y12-17c19.q1k chr13 447 671 1804 1803 F 225 0.00 1275 reject_low 293 ALIGNMENT 566 Y12-17c19.q1k chr16 872 1 945569 946442 C 872 89.79 1275 reject_low 11 ALIGNMENT 0 Y12-17c19.q1k chr09 174 671 2378 2377 F 498 0.00 1275 reject_low 351 ALIGNMENT 0 Y12-17c19.p1k chr05 871 765 4559 4585 C 107 0.00 1274 reject_low 8 ALIGNMENT 0 Y12-17c19.q1k chr13 241 671 2066 2065 F 431 0.00 1275 reject_low 232 ALIGNMENT 24 Y12-17c19.q1k chr13 1 63 2007 2069 F 63 84.13 1275 reject_low 339 ALIGNMENT 129 Y12-17c19.q1k chr08 57 306 1651 1900 F 250 85.60 1275 reject_low 183 ALIGNMENT 0 Y12-17c19.q1k chr07 671 194 1088971 1088970 C 478 0.00 1275 reject_low 246 ALIGNMENT 172 Y12-17c19.q1k chr08 465 129 560505 560841 C 337 84.87 1275 reject_low 150 ALIGNMENT 0 Y12-17c19.q1k chr13 462 671 1963 1962 F 210 0.00 1275 reject_low 196 ALIGNMENT 0 Y12-17c19.q1k chr05 466 671 1806 1805 F 206 0.00 1275 reject_low 62 ALIGNMENT 41 Y12-17c19.q1k chr08 450 381 560772 560841 C 70 87.14 1275 reject_low 317 ALIGNMENT 185 Y12-17c19.q1k chr02 31 391 1820 2180 F 361 85.32 1275 reject_low 146 ALIGNMENT 0 Y12-17c19.q1k chr06 468 671 1123 1122 F 204 0.00 1275 reject_low 169 ALIGNMENT 111 Y12-17c19.q1k chr10 201 465 1669 1933 F 265 81.51 1275 reject_low 202 ALIGNMENT 20 Y12-17c19.q1k chr16 450 428 946461 946483 C 23 95.65 1275 reject_low 355 ALIGNMENT 0 Y12-17c19.q1k chr16 200 62 946495 946494 C 139 0.00 1275 reject_low 251 ALIGNMENT 68 Y12-17c19.q1k chr02 9 175 2015 2180 F 167 83.23 1275 reject_low 257 ALIGNMENT 0 Y12-17c19.q1k chr04 671 462 1530193 1530192 C 210 0.00 1275 reject_low 193 ALIGNMENT 34 Y12-17c19.q1k chr12 31 99 2125 2193 F 69 85.51 1275|0,3 reject_low 93,95,368 ALIGNMENT 0 Y12-17c19.q1k chr04 231 62 1530494 1530493 C 170 0.00 1275 reject_low 218 ALIGNMENT 136 Y12-17c19.q1k chr02 1 306 1862 2167 F 306 83.66 1275 reject_low 171 ALIGNMENT 94 Y12-17c19.q1k chr06 1 357 909 1265 F 357 77.31 1275 reject_low 215 ALIGNMENT 0 Y12-17c19.q1k chr12 328 329 1070007 1076273 C 0 0.00 1275 reject_low 358 ALIGNMENT 146 Y12-17c19.q1k chr12 165 446 1683 1964 F 282 85.11 1275 reject_low 39 ALIGNMENT 0 Y12-17c19.q1k chr16 671 466 946015 946014 C 206 0.00 1275 reject_low 18 ALIGNMENT 0 Y12-17c19.q1k chr07 380 62 1089395 1089394 C 319 0.00 1275 reject_low 316 ALIGNMENT 67 Y12-17c19.q1k chr06 344 461 892 1009 F 118 86.44 1275 reject_low 261 ALIGNMENT 0 Y12-17c19.q1k chr16 62 164 1483 1482 F 103 0.00 1275 reject_low 198 ALIGNMENT 100 Y12-17c19.q1k chr12 1 301 1915 2215 F 301 80.07 1275|0,9 reject_low 97 ALIGNMENT 261 Y12-17c19.p1k chr13 385 8 3887 4297 C 378 90.21 1274 reject_low 13 ALIGNMENT 0 Y12-17c19.q1k chr16 671 64 945985 945984 C 608 0.00 1275 reject_low 342 ALIGNMENT 135 Y12-17c19.q1k chr05 165 450 1470 1755 F 286 83.57 1275 reject_low 66 ALIGNMENT 0 Y12-17c19.q1k chr09 62 176 1842 1841 F 115 0.00 1275 reject_low 141 ALIGNMENT 215 Y12-17c19.q1k chr04 409 1 1530064 1530472 C 409 86.06 1275 reject_low 131 ALIGNMENT 0 Y12-17c19.q1k chr12 128 62 1076690 1076689 C 67 0.00 1275 reject_low 63 ALIGNMENT 0 Y12-17c19.q1k chr05 430 671 2058 2057 F 242 0.00 1275 reject_low 58 ALIGNMENT 43 Y12-17c19.q1k chr16 446 381 946429 946494 C 66 89.39 1275 reject_low 312 ALIGNMENT 43 Y12-17c19.q1k chr05 356 446 1481 1571 F 91 83.52 1275 reject_low 87 ALIGNMENT 0 Y12-17c19.q1k chr04 200 62 1530489 1530488 C 139 0.00 1275 reject_low 176 ALIGNMENT 0 Y12-17c19.q1k chr16 671 410 945963 945962 C 262 0.00 1275 reject_low 28 ALIGNMENT 0 Y12-17c19.q1k chr04 283 62 1530478 1530477 C 222 0.00 1275 reject_low 262 ALIGNMENT 0 Y12-17c19.q1k chr04 128 62 1530489 1530488 C 67 0.00 1275 reject_low 166 ALIGNMENT 0 Y12-17c19.q1k chr12 466 671 2019 2018 F 206 0.00 1275 reject_low 35 ALIGNMENT 142 Y12-17c19.q1k chr06 249 467 905 1123 F 219 89.04 1275 reject_low 169 ALIGNMENT 0 Y12-17c19.q1k chr08 388 671 1909 1908 F 284 0.00 1275 reject_low 143 ALIGNMENT 0 Y12-17c19.q1k chr08 671 241 560443 560442 C 431 0.00 1275 reject_low 214 ALIGNMENT 0 Y12-17c19.q1k chr02 140 671 2180 2179 F 532 0.00 1275 reject_low 275 ALIGNMENT 44 Y12-17c19.q1k chr05 31 209 1876 2054 F 179 77.09 1275 reject_low 85 ALIGNMENT 0 Y12-17c19.q1k chr16 447 671 1584 1583 F 225 0.00 1275 reject_low 309 ALIGNMENT 0 Y12-17c19.q1k chr08 231 671 1932 1931 F 441 0.00 1275 reject_low 228 ALIGNMENT 0 Y12-17c19.q1k chr06 62 271 892 891 F 210 0.00 1275 reject_low 151 ALIGNMENT 575 Y12-17c19.q1k chr05 1 872 1594 2455 F 872 90.02 1275 reject_low 8 ALIGNMENT 0 Y12-17c19.q1k chr12 64 671 7728 7727 F 608 0.00 1275 reject_low 338 ALIGNMENT 94 Y12-17c19.q1k chr05 465 232 575089 575322 C 234 80.77 1275 reject_low 219 ALIGNMENT 0 Y12-17c19.q1k chr05 62 319 1481 1480 F 258 0.00 1275 reject_low 78 ALIGNMENT 72 Y12-17c19.q1k chr16 1 193 1715 1907 F 193 81.87 1275 reject_low 249 ALIGNMENT 81 Y12-17c19.q1k chr13 31 229 1893 2091 F 199 82.41 1275 reject_low 241 ALIGNMENT 0 Y12-17c19.q1k chr16 671 302 945963 945962 C 370 0.00 1275 reject_low 41 ALIGNMENT 0 Y12-17c19.q1k chr05 62 380 1470 1469 F 319 0.00 1275 reject_low 86 ALIGNMENT 1019 Y12-17c20.p1k chr15 1197 16 819011 820190 C 1182 96.62 1222 accept 0 ALIGNMENT 675 Y12-17c20.q1k chr15 5 833 815994 816812 F 829 96.14 1255 accept 0 ALIGNMENT 994 Y12-17c22.q1k chr08 26 1230 273518 274719 F 1205 95.93 1301 accept 0 ALIGNMENT 954 Y12-17c22.p1k chr08 1117 14 278338 279459 C 1104 96.29 1263 accept 0 ALIGNMENT 682 Y12-17d01.p1k chr02 790 13 750669 751446 C 778 98.07 1386 accept 0 ALIGNMENT 854 Y12-17d01.q1k chr02 32 1048 747280 748289 F 1017 96.26 1272 accept 0 ALIGNMENT 1000 Y12-17d02.p1k chr08 1264 18 83386 84631 C 1247 94.95 1276 accept 0 ALIGNMENT 642 Y12-17d02.q1k chr08 48 927 78719 79582 F 880 93.30 1482 accept 0 ALIGNMENT 729 Y12-17d03.q1k chr16 892 32 344646 345498 C 861 96.75 1367 accept 0 ALIGNMENT 743 Y12-17d03.p1k chr16 1 876 340083 340947 F 876 95.78 1311 accept 0 ALIGNMENT 0 Y12-17d06.q1k chr07 498 62 185794 185793 C 437 0.00 1327 reject_low 6 ALIGNMENT 77 Y12-17d06.q1k chr09 580 499 300219 300299 C 82 98.78 1327 reject_low 12 ALIGNMENT 0 Y12-17d06.q1k chr11 472 484 202291 202629 F 13 0.00 1327 accept 0 ALIGNMENT 698 Y12-17d06.p1k chr11 843 3 207189 208023 C 841 95.72 1299 accept 0 ALIGNMENT 0 Y12-17d06.q1k chr05 495 62 135502 135501 C 434 0.00 1327 reject_low 4 ALIGNMENT 87 Y12-17d06.q1k chr04 588 499 1352440 1352529 C 90 98.89 1327 reject_low 1 ALIGNMENT 80 Y12-17d06.q1k chr16 499 581 582058 582140 F 83 98.80 1327 reject_low 8 ALIGNMENT 83 Y12-17d06.q1k chr07 581 499 185711 185793 C 83 100.00 1327 reject_low 6 ALIGNMENT 76 Y12-17d06.q1k chr10 499 582 414880 414964 F 84 97.62 1327 reject_low 11 ALIGNMENT 408 Y12-17d06.q1k chr11 25 471 201844 202290 F 447 98.43 1327 accept 0 ALIGNMENT 0 Y12-17d06.q1k chr10 62 498 414880 414879 F 437 0.00 1327 reject_low 11 ALIGNMENT 80 Y12-17d06.q1k chr07 499 582 876398 876481 F 84 98.81 1327 reject_low 7 ALIGNMENT 78 Y12-17d06.q1k chr13 582 499 480611 480693 C 84 98.81 1327 reject_low 10 ALIGNMENT 75 Y12-17d06.q1k chr04 499 573 1201739 1201813 F 75 100.00 1327 reject_low 13 ALIGNMENT 80 Y12-17d06.q1k chr05 580 495 435740 435825 C 86 97.67 1327 reject_low 3 ALIGNMENT 79 Y12-17d06.q1k chr07 499 582 122272 122356 F 84 98.81 1327 reject_low 9 ALIGNMENT 0 Y12-17d06.q1k chr09 498 62 300300 300299 C 437 0.00 1327 reject_low 12 ALIGNMENT 0 Y12-17d06.q1k chr04 62 498 1201739 1201738 F 437 0.00 1327 reject_low 13 ALIGNMENT 73 Y12-17d06.q1k chr06 583 494 226664 226754 C 90 95.56 1327 reject_low 5 ALIGNMENT 0 Y12-17d06.q1k chr04 498 62 1352530 1352529 C 437 0.00 1327 reject_low 1 ALIGNMENT 0 Y12-17d06.q1k chr05 494 62 435826 435825 C 433 0.00 1327 reject_low 3 ALIGNMENT 0 Y12-17d06.q1k chr13 498 62 480694 480693 C 437 0.00 1327 reject_low 10 ALIGNMENT 81 Y12-17d06.q1k chr03 581 494 151272 151360 C 88 97.73 1327 reject_low 2 ALIGNMENT 101 Y12-17d06.q1k chr11 485 696 202630 202838 F 212 84.43 1327 accept 0 ALIGNMENT 0 Y12-17d06.q1k chr07 62 498 876398 876397 F 437 0.00 1327 reject_low 7 ALIGNMENT 0 Y12-17d06.q1k chr06 493 62 226755 226754 C 432 0.00 1327 reject_low 5 ALIGNMENT 0 Y12-17d06.q1k chr07 62 498 122272 122271 F 437 0.00 1327 reject_low 9 ALIGNMENT 0 Y12-17d06.q1k chr03 493 62 151361 151360 C 432 0.00 1327 reject_low 2 ALIGNMENT 82 Y12-17d06.q1k chr05 580 496 135417 135501 C 85 98.82 1327 reject_low 4 ALIGNMENT 0 Y12-17d06.q1k chr16 62 498 582058 582057 F 437 0.00 1327 reject_low 8 ALIGNMENT 456 Y12-17d07.q1k chr04 679 9 1296360 1297049 C 671 91.06 1337 accept 0 ALIGNMENT 556 Y12-17d08.p1k chr07 720 9 627865 628568 C 712 94.52 1301 accept 0 ALIGNMENT 847 Y12-17d08.q1k chr07 28 974 622492 623442 F 947 97.47 1343 accept 0 ALIGNMENT 984 Y12-17d09.p1k chr16 11 1186 753660 754829 F 1176 95.83 1379 accept 0 ALIGNMENT 651 Y12-17d09.q1k chr16 817 4 756672 757471 C 814 95.21 1241 accept 0 ALIGNMENT 848 Y12-17d10.p1k chr07 1067 14 156891 157949 C 1054 94.59 1384 accept 0 ALIGNMENT 758 Y12-17d10.q1k chr07 18 944 152588 153504 F 927 95.58 1426 accept 0 ALIGNMENT 648 Y12-17d11.q1k chr10 6 803 502221 503018 F 798 95.36 1334 accept 0 ALIGNMENT 687 Y12-17d11.p1k chr10 958 35 506184 507093 C 924 94.05 1475 accept 0 ALIGNMENT 649 Y12-17d12.q1k chr11 5 745 252711 253449 F 741 97.57 1244 accept 0 ALIGNMENT 668 Y12-17d12.p1k chr11 887 31 255957 256811 C 857 94.05 1374 accept 0 ALIGNMENT 868 Y12-17d13.p1k chr01 1 1025 120045 121052 F 1025 96.78 1379 accept 0 ALIGNMENT 887 Y12-17d13.q1k chr01 992 13 123430 124407 C 980 98.16 1307 accept 0 ALIGNMENT 990 Y12-17d14.p1k chr12 16 1152 901946 903091 F 1137 96.66 1279 accept_chi 0 ALIGNMENT 921 Y12-17d14.q1k chr09 1036 27 44158 45167 C 1010 98.12 1292 accept_chi 1 ALIGNMENT 952 Y12-17d15.p1k chr12 1208 17 466735 467917 C 1192 94.80 1280 manual 1 ALIGNMENT 948 Y12-17d15.p1k chr12 1184 17 457620 458780 C 1168 95.12 1280 manual 2 ALIGNMENT 993 Y12-17d15.q1k chr10 28 1242 499683 500903 F 1215 95.47 1265 accept_chi 0 ALIGNMENT 325 Y12-17d16.q1k chr03 307 685 12239 12617 F 379 97.10 1342 reject_low 3 ALIGNMENT 0 Y12-17d16.p1k chr16 62 425 338847 338846 F 364 0.00 1299 reject_low 7 ALIGNMENT 69 Y12-17d16.p1k chr16 426 497 338847 338918 F 72 100.00 1299 reject_low 7 ALIGNMENT 588 Y12-17d16.p1k chr03 689 8 149726 150406 C 682 97.51 1299 accept 0 ALIGNMENT 0 Y12-17d16.p1k chr16 498 605 338918 338917 F 108 0.00 1299 reject_low 7 ALIGNMENT 0 Y12-17d16.q1k chr03 62 306 199396 199395 F 245 0.00 1342 reject_low 2 ALIGNMENT 0 Y12-17d16.p1k chr05 605 498 100134 100133 C 108 0.00 1299 reject_low 5 ALIGNMENT 69 Y12-17d16.p1k chr05 497 426 100133 100204 C 72 100.00 1299 reject_low 5 ALIGNMENT 0 Y12-17d16.p1k chr15 605 498 710202 710201 C 108 0.00 1299 reject_low 6 ALIGNMENT 0 Y12-17d16.p1k chr10 502 605 517802 517801 F 104 0.00 1299 reject_low 4 ALIGNMENT 332 Y12-17d16.q1k chr03 307 685 199396 199772 F 379 97.63 1342 reject_low 2 ALIGNMENT 0 Y12-17d16.q1k chr03 62 306 12239 12238 F 245 0.00 1342 reject_low 3 ALIGNMENT 601 Y12-17d16.q1k chr03 3 685 292724 293406 F 683 97.80 1342 ambiguous_tel 1 ALIGNMENT 0 Y12-17d16.p1k chr10 62 425 517727 517726 F 364 0.00 1299 reject_low 4 ALIGNMENT 0 Y12-17d16.p1k chr15 425 62 710273 710272 C 364 0.00 1299 reject_low 6 ALIGNMENT 69 Y12-17d16.p1k chr15 497 426 710201 710272 C 72 100.00 1299 reject_low 6 ALIGNMENT 0 Y12-17d16.p1k chr05 425 62 100205 100204 C 364 0.00 1299 reject_low 5 ALIGNMENT 71 Y12-17d16.p1k chr10 426 501 517727 517802 F 76 98.68 1299 reject_low 4 ALIGNMENT 225 Y12-17d17.p1k chr07 785 1159 882817 883179 F 375 88.27 1262 reject_low 1 ALIGNMENT 0 Y12-17d17.p1k chr07 62 784 882817 882816 F 723 0.00 1262 reject_low 1 ALIGNMENT 809 Y12-17d17.q1k chr10 1030 23 456986 457979 C 1008 95.63 1273 accept 0 ALIGNMENT 984 Y12-17d17.p1k chr10 12 1159 452822 453959 F 1148 96.34 1262 accept 0 ALIGNMENT 554 Y12-17d18.p1k chr11 766 36 292109 292833 C 731 93.71 1456 accept 0 ALIGNMENT 834 Y12-17d18.q1k chr11 1 1005 288174 289166 F 1005 96.12 1254 accept 0 ALIGNMENT 0 Y12-17d19.p1k chr02 855 436 606654 606653 C 420 0.00 1231 reject_low 1 ALIGNMENT 954 Y12-17d19.q1k chr16 4 1113 402442 403544 F 1110 96.49 1218 accept 0 ALIGNMENT 988 Y12-17d19.p1k chr16 1223 16 406269 407473 C 1208 95.36 1231 accept 0 ALIGNMENT 343 Y12-17d19.p1k chr02 435 17 606653 607071 C 419 94.27 1231 reject_low 1 ALIGNMENT 1027 Y12-17d21.p1k chr16 15 1235 477263 478497 F 1221 95.58 1290 accept 0 ALIGNMENT 789 Y12-17d21.q1k chr16 903 16 480693 481579 C 888 97.52 1389 accept 0 ALIGNMENT 945 Y12-17d22.q1k chr08 31 1196 64170 65336 F 1166 95.28 1279 accept 0 ALIGNMENT 1026 Y12-17d22.p1k chr08 1178 19 67469 68624 C 1160 97.07 1325 accept 0 ALIGNMENT 1023 Y12-17d23.p1k chr10 1210 14 316702 317901 C 1197 95.99 1239 accept 0 ALIGNMENT 892 Y12-17d23.q1k chr10 27 1063 312292 313320 F 1037 96.62 1239 accept 0 ALIGNMENT 0 Y12-17d24.p1k chr12 381 62 721406 721405 C 320 0.00 1313 reject_low 1 ALIGNMENT 908 Y12-17d24.p1k chr15 1118 13 681361 682446 C 1106 95.93 1313 accept 0 ALIGNMENT 246 Y12-17d24.p1k chr12 971 382 720823 721405 C 590 82.03 1313 reject_low 1 ALIGNMENT 977 Y12-17d24.q1k chr15 32 1218 678017 679208 F 1187 95.79 1218 accept 0 ALIGNMENT 0 Y12-17d24.q1k chr12 62 205 712540 712539 F 144 0.00 1218 reject_low 1 ALIGNMENT 0 Y12-17d24.q1k chr12 398 823 712731 712730 F 426 0.00 1218 reject_low 1 ALIGNMENT 165 Y12-17d24.q1k chr12 206 397 712540 712731 F 192 95.83 1218 reject_low 1 ALIGNMENT 610 Y12-17e02.p1k chr13 787 7 96590 97367 C 781 93.73 1273 accept 0 ALIGNMENT 449 Y12-17e02.q1k chr16 75 735 925296 925940 F 661 92.44 1615 ambiguous_tel 1 ALIGNMENT 967 Y12-17e03.p1k chr07 21 1217 721588 722803 F 1197 95.15 1229 accept 0 ALIGNMENT 885 Y12-17e03.q1k chr07 1086 28 724993 726062 C 1059 95.94 1263 accept 0 ALIGNMENT 969 Y12-17e04.p1k chr16 1208 13 930270 931476 C 1196 94.73 1261 accept 0 ALIGNMENT 962 Y12-17e04.q1k chr16 29 1138 925267 926389 F 1110 96.22 1252 accept 0 ALIGNMENT 1020 Y12-17e05.p1k chr12 17 1218 336106 337303 F 1202 96.67 1368 accept 0 ALIGNMENT 998 Y12-17e05.q1k chr12 1179 28 339300 340470 C 1152 96.61 1369 accept 0 ALIGNMENT 1034 Y12-17e06.p1k chr12 1165 13 452547 453715 C 1153 96.88 1386 accept_chi 0 ALIGNMENT 669 Y12-17e06.q1k chr13 780 1 230086 230864 C 780 96.15 1307 accept_chi 2 ALIGNMENT 1034 Y12-17e06.p1k chr12 1165 13 461684 462852 C 1153 96.88 1386 accept_chi 1 ALIGNMENT 836 Y12-17e07.q1k chr16 32 978 322734 323676 F 947 97.57 1336 accept 0 ALIGNMENT 982 Y12-17e07.p1k chr16 1237 22 325954 327174 C 1216 94.65 1249 accept 0 ALIGNMENT 736 Y12-17e08.q1k chr07 17 861 542038 542875 F 845 97.16 1426 accept 0 ALIGNMENT 705 Y12-17e08.p1k chr07 935 28 547694 548583 C 908 94.93 1461 accept 0 ALIGNMENT 834 Y12-17e09.q1k chr07 1005 29 353722 354692 C 977 97.03 1303 accept 0 ALIGNMENT 713 Y12-17e09.p1k chr07 18 860 349442 350271 F 843 96.80 1369 accept 0 ALIGNMENT 442 Y12-17e10.q1k chr05 43 667 538845 539459 F 625 92.32 1551 accept 0 ALIGNMENT 591 Y12-17e10.p1k chr05 836 35 541951 542737 C 802 94.89 1560 accept 0 ALIGNMENT 958 Y12-17e14.p1k chr07 1137 12 623637 624764 C 1126 96.00 1301 accept 0 ALIGNMENT 930 Y12-17e14.q1k chr07 31 1143 620054 621166 F 1113 95.60 1296 accept 0 ALIGNMENT 925 Y12-17e15.p1k chr12 1233 29 140555 141751 C 1205 94.36 1244 accept 0 ALIGNMENT 950 Y12-17e15.q1k chr12 33 1166 137304 138443 F 1134 95.94 1256 accept 0 ALIGNMENT 975 Y12-17e16.q1k chr04 1198 26 367244 368413 C 1173 95.48 1277 accept 0 ALIGNMENT 909 Y12-17e16.p1k chr04 15 1170 364237 365382 F 1156 94.29 1307 accept 0 ALIGNMENT 870 Y12-17e17.q1k chr04 29 1077 158266 159301 F 1049 96.28 1274 accept 0 ALIGNMENT 896 Y12-17e17.p1k chr04 1174 22 163302 164428 C 1153 94.88 1243 accept 0 ALIGNMENT 979 Y12-17e18.p1k chr04 17 1242 1051319 1052532 F 1226 94.78 1242 accept_chi 0 ALIGNMENT 891 Y12-17e18.q1k chr05 32 1088 422705 423744 F 1057 96.50 1284 accept_chi 1 ALIGNMENT 721 Y12-17e20.q1k chr07 968 18 19429 20373 C 951 93.38 1215 accept 0 ALIGNMENT 950 Y12-17e20.p1k chr07 15 1150 14599 15727 F 1136 95.60 1212 accept 0 ALIGNMENT 844 Y12-17e21.p1k chr07 981 18 387302 388250 C 964 97.30 1254 accept 0 ALIGNMENT 963 Y12-17e21.q1k chr07 23 1075 383579 384632 F 1053 97.44 1191 accept 0 ALIGNMENT 435 Y12-17e21.p1k chr02 23 791 659195 659964 F 769 85.96 1254 reject_low 1 ALIGNMENT 0 Y12-17e22.p1k chr12 62 406 489754 489753 F 345 0.00 1129 reject_low 2 ALIGNMENT 542 Y12-17e22.p1k chr12 59 788 451419 452157 F 730 93.29 1129 reject_low 1 ALIGNMENT 256 Y12-17e22.p1k chr12 407 788 489754 490125 F 382 91.36 1129 reject_low 2 ALIGNMENT 762 Y12-17e22.q1k chr12 851 3 455821 456670 C 849 97.06 1158 reject_low 1 ALIGNMENT 586 Y12-17e22.p1k chr12 8 788 460506 461294 F 781 93.60 1129 accept 0 ALIGNMENT 762 Y12-17e22.q1k chr12 851 3 464958 465807 C 849 97.06 1158 accept 0 ALIGNMENT 485 Y12-17e23.p1k chr08 853 15 287589 288428 C 839 87.49 1200 reject_low 2 ALIGNMENT 0 Y12-17e23.p1k chr10 62 231 27481 27480 F 170 0.00 1200 reject_low 7 ALIGNMENT 665 Y12-17e23.p1k chr04 942 15 1160025 1160944 C 928 92.46 1200 reject_low 1 ALIGNMENT 21 Y12-17e23.p1k chr10 658 698 733357 733397 F 41 85.37 1200 reject_low 8 ALIGNMENT 0 Y12-17e23.q1k chr07 92 569 384122 384121 F 478 0.00 1245 reject_low 3 ALIGNMENT 79 Y12-17e23.q1k chr07 570 846 384122 384397 F 277 77.62 1245 reject_low 3 ALIGNMENT 320 Y12-17e23.p1k chr04 756 15 1163550 1164293 C 742 82.35 1200 reject_low 4 ALIGNMENT 215 Y12-17e23.p1k chr08 756 15 291517 292260 C 742 77.76 1200 reject_low 5 ALIGNMENT 0 Y12-17e23.p1k chr10 62 657 733357 733356 F 596 0.00 1200 reject_low 8 ALIGNMENT 119 Y12-17e23.p1k chr10 232 762 27481 28010 F 531 75.71 1200 reject_low 7 ALIGNMENT 299 Y12-17e23.q1k chr04 33 459 1151415 1151840 F 427 92.51 1245 accept 0 ALIGNMENT 142 Y12-17e23.p1k chr13 50 807 288457 289212 F 758 74.41 1200 reject_low 6 ALIGNMENT 665 Y12-17e23.p1k chr04 942 15 1154633 1155552 C 928 92.46 1200 accept 0 ALIGNMENT 364 Y12-17e24.p1k chr13 969 17 357947 358888 C 953 82.27 1257 ambiguous_trans 26 ALIGNMENT 548 Y12-17e24.p1k chr14 17 999 523177 524143 F 983 88.20 1257 ambiguous_trans 17 ALIGNMENT 806 Y12-17e24.p1k chr15 17 999 974356 975322 F 983 96.95 1257 ambiguous_trans 8 ALIGNMENT 515 Y12-17e24.p1k chr13 14 999 188195 189165 F 986 87.02 1257 ambiguous_trans 18 ALIGNMENT 894 Y12-17e24.q1k chr10 36 1073 350986 352008 F 1038 97.30 1194 accept 0 ALIGNMENT 794 Y12-17e24.p1k chr04 17 999 875890 876856 F 983 96.54 1257 ambiguous_trans 10 ALIGNMENT 491 Y12-17e24.p1k chr05 999 17 444316 445282 C 983 86.27 1257 ambiguous_trans 22 ALIGNMENT 515 Y12-17e24.p1k chr16 14 999 848442 849412 F 986 87.02 1257 ambiguous_trans 19 ALIGNMENT 821 Y12-17e24.p1k chr07 999 17 569663 570629 C 983 97.46 1257 ambiguous_trans 3 ALIGNMENT 563 Y12-17e24.p1k chr04 999 14 646417 647387 C 986 88.64 1257 ambiguous_trans 14 ALIGNMENT 815 Y12-17e24.p1k chr12 17 999 945263 946229 F 983 97.25 1257 ambiguous_trans 5 ALIGNMENT 821 Y12-17e24.p1k chr03 17 999 88884 89850 F 983 97.46 1257 ambiguous_trans 1 ALIGNMENT 758 Y12-17e24.p1k chr12 858 17 976780 977622 C 842 98.57 1257 ambiguous_trans 13 ALIGNMENT 512 Y12-17e24.p1k chr16 999 17 805561 806527 C 983 86.98 1257 ambiguous_trans 20 ALIGNMENT 475 Y12-17e24.p1k chr05 969 56 493440 494341 C 914 86.65 1257 ambiguous_trans 24 ALIGNMENT 548 Y12-17e24.p1k chr01 999 17 161162 162128 C 983 88.20 1257 ambiguous_trans 16 ALIGNMENT 475 Y12-17e24.p1k chr13 969 56 373645 374546 C 914 86.65 1257 ambiguous_trans 25 ALIGNMENT 803 Y12-17e24.p1k chr15 999 17 704983 705949 C 983 96.85 1257 ambiguous_trans 9 ALIGNMENT 806 Y12-17e24.p1k chr04 17 999 985239 986205 F 983 96.95 1257 ambiguous_trans 7 ALIGNMENT 779 Y12-17e24.p1k chr02 17 969 33715 34656 F 953 96.64 1257 ambiguous_trans 12 ALIGNMENT 821 Y12-17e24.p1k chr07 17 999 815526 816492 F 983 97.46 1257 ambiguous_trans 4 ALIGNMENT 500 Y12-17e24.p1k chr16 999 17 851549 852515 C 983 86.57 1257 ambiguous_trans 21 ALIGNMENT 821 Y12-17e24.p1k chr06 17 999 141982 142948 F 983 97.46 1257 ambiguous_trans 2 ALIGNMENT 815 Y12-17e24.p1k chr14 999 17 562952 563918 C 983 97.25 1257 ambiguous_trans 6 ALIGNMENT 491 Y12-17e24.p1k chr13 17 999 200366 201332 F 983 86.27 1257 ambiguous_trans 23 ALIGNMENT 554 Y12-17e24.p1k chr04 999 14 879218 880188 C 986 88.34 1257 ambiguous_trans 15 ALIGNMENT 791 Y12-17e24.p1k chr04 999 17 514603 515569 C 983 96.44 1257 ambiguous_trans 11 ALIGNMENT 119 Y12-17f01.q1k chr12 714 832 482044 482162 F 119 100.00 1435 reject_low 6 ALIGNMENT 0 Y12-17f01.q1k chr12 62 713 472464 472463 F 652 0.00 1435 reject_low 5 ALIGNMENT 0 Y12-17f01.q1k chr12 62 713 489348 489347 F 652 0.00 1435 reject_low 3 ALIGNMENT 760 Y12-17f01.q1k chr12 33 832 468131 468930 F 800 99.62 1435 reject_low 2 ALIGNMENT 989 Y12-17f01.p1k chr12 1192 16 463507 464697 C 1177 95.67 1391 reject_bad_break 0 ALIGNMENT 0 Y12-17f01.q1k chr06 346 62 31730 31729 C 285 0.00 1435 reject_low 4 ALIGNMENT 0 Y12-17f01.q1k chr12 62 713 482044 482043 F 652 0.00 1435 reject_low 6 ALIGNMENT 0 Y12-17f01.q1k chr06 737 455 31623 31622 C 283 0.00 1435 reject_low 4 ALIGNMENT 0 Y12-17f01.q1k chr12 856 868 459816 459838 F 13 0.00 1435 reject_bad_break 0 ALIGNMENT 30 Y12-17f01.q1k chr12 869 910 459839 459880 F 42 92.86 1435 reject_bad_break 0 ALIGNMENT 94 Y12-17f01.q1k chr06 454 347 31622 31729 C 108 98.15 1435 reject_low 4 ALIGNMENT 0 Y12-17f01.q1k chr12 62 713 485696 485695 F 652 0.00 1435 reject_low 7 ALIGNMENT 989 Y12-17f01.p1k chr12 1192 16 454370 455560 C 1177 95.67 1391 reject_low 1 ALIGNMENT 766 Y12-17f01.q1k chr12 33 855 458994 459815 F 823 99.15 1435 reject_bad_break 0 ALIGNMENT 119 Y12-17f01.q1k chr12 714 832 472464 472582 F 119 100.00 1435 reject_low 5 ALIGNMENT 119 Y12-17f01.q1k chr12 714 832 485696 485814 F 119 100.00 1435 reject_low 7 ALIGNMENT 122 Y12-17f01.q1k chr12 714 838 489348 489472 F 125 99.20 1435 reject_low 3 ALIGNMENT 996 Y12-17f03.q1k chr10 1217 31 674900 676099 C 1187 95.87 1287 accept 0 ALIGNMENT 984 Y12-17f03.p1k chr10 16 1145 671112 672256 F 1130 96.90 1257 accept 0 ALIGNMENT 715 Y12-17f04.q1k chr13 12 855 134216 135052 F 844 96.21 1334 accept 0 ALIGNMENT 776 Y12-17f04.p1k chr13 959 37 138210 139118 C 923 96.75 1472 accept 0 ALIGNMENT 951 Y12-17f05.p1k chr11 13 1089 462815 463908 F 1077 96.84 1336 accept 0 ALIGNMENT 845 Y12-17f05.q1k chr11 1082 32 466074 467118 C 1051 95.43 1460 accept 0 ALIGNMENT 836 Y12-17f06.p1k chr13 2 932 848963 849893 F 931 97.74 1378 accept 0 ALIGNMENT 698 Y12-17f06.q1k chr13 813 32 852968 853750 C 782 97.06 1461 accept 0 ALIGNMENT 945 Y12-17f07.p1k chr10 1194 7 646576 647748 C 1188 94.95 1326 accept 0 ALIGNMENT 803 Y12-17f07.q1k chr10 30 1007 643375 644349 F 978 96.22 1312 accept 0 ALIGNMENT 1001 Y12-17f08.q1k chr15 27 1271 561728 562984 F 1245 94.86 1299 accept 0 ALIGNMENT 1015 Y12-17f08.p1k chr15 1203 20 564507 565682 C 1184 96.03 1317 accept 0 ALIGNMENT 716 Y12-17f09.p1k chr10 862 4 688081 688919 C 859 96.51 1416 accept 0 ALIGNMENT 719 Y12-17f09.q1k chr10 30 839 683385 684188 F 810 98.02 1399 accept 0 ALIGNMENT 128 Y12-17f11.q1k chr12 180 313 489348 489481 F 134 98.51 1372 reject_low 3 ALIGNMENT 21 Y12-17f11.q1k chr12 689 735 460217 460260 F 47 87.23 1372 reject_bad_break 0 ALIGNMENT 0 Y12-17f11.q1k chr12 299 537 485814 485813 F 239 0.00 1372 reject_low 6 ALIGNMENT 0 Y12-17f11.q1k chr12 62 179 482044 482043 F 118 0.00 1372 reject_low 5 ALIGNMENT 0 Y12-17f11.q1k chr12 299 537 482162 482161 F 239 0.00 1372 reject_low 5 ALIGNMENT 686 Y12-17f11.p1k chr12 789 6 462979 463750 C 784 97.07 1454 reject_bad_break 0 ALIGNMENT 291 Y12-17f11.q1k chr12 4 298 468636 468930 F 295 100.00 1372 reject_low 2 ALIGNMENT 119 Y12-17f11.q1k chr12 180 298 482044 482162 F 119 100.00 1372 reject_low 5 ALIGNMENT 0 Y12-17f11.q1k chr12 62 179 485696 485695 F 118 0.00 1372 reject_low 6 ALIGNMENT 119 Y12-17f11.q1k chr12 180 298 472464 472582 F 119 100.00 1372 reject_low 4 ALIGNMENT 119 Y12-17f11.q1k chr12 180 298 485696 485814 F 119 100.00 1372 reject_low 6 ALIGNMENT 0 Y12-17f11.q1k chr12 62 179 489348 489347 F 118 0.00 1372 reject_low 3 ALIGNMENT 0 Y12-17f11.q1k chr12 299 537 468930 468929 F 239 0.00 1372 reject_low 2 ALIGNMENT 686 Y12-17f11.p1k chr12 789 6 453842 454613 C 784 97.07 1454 reject_low 1 ALIGNMENT 0 Y12-17f11.q1k chr12 62 179 472464 472463 F 118 0.00 1372 reject_low 4 ALIGNMENT 0 Y12-17f11.q1k chr12 299 537 472582 472581 F 239 0.00 1372 reject_low 4 ALIGNMENT 552 Y12-17f11.q1k chr12 4 681 459499 460194 F 678 95.43 1372 reject_bad_break 0 ALIGNMENT 0 Y12-17f11.q1k chr12 314 537 489481 489480 F 224 0.00 1372 reject_low 3 ALIGNMENT 0 Y12-17f11.q1k chr12 682 688 460195 460216 F 7 0.00 1372 reject_bad_break 0 ALIGNMENT 673 Y12-17f12.p1k chr04 27 867 464041 464874 F 841 94.53 1448 accept 0 ALIGNMENT 0 Y12-17f12.q1k chr15 134 62 623086 623085 C 73 0.00 1472 reject_low 3 ALIGNMENT 775 Y12-17f12.q1k chr04 919 43 468328 469202 C 877 97.15 1472 accept 0 ALIGNMENT 0 Y12-17f12.q1k chr14 137 62 768195 768194 C 76 0.00 1472 reject_low 1 ALIGNMENT 0 Y12-17f12.q1k chr14 681 664 767671 767670 C 18 0.00 1472 reject_low 1 ALIGNMENT 0 Y12-17f12.q1k chr16 423 577 447498 447652 F 155 0.00 1472 reject_low 2 ALIGNMENT 0 Y12-17f12.q1k chr15 643 400 622575 622820 C 244 0.00 1472 reject_low 3 ALIGNMENT 20 Y12-17f12.q1k chr15 690 644 622528 622574 C 47 80.85 1472 reject_low 3 ALIGNMENT 84 Y12-17f12.q1k chr16 139 422 447214 447497 F 284 77.11 1472 reject_low 2 ALIGNMENT 108 Y12-17f12.q1k chr14 663 138 767670 768194 C 526 74.14 1472 reject_low 1 ALIGNMENT 38 Y12-17f12.q1k chr16 578 681 447653 447758 F 104 79.81 1472 reject_low 2 ALIGNMENT 0 Y12-17f12.q1k chr16 62 138 447214 447213 F 77 0.00 1472 reject_low 2 ALIGNMENT 47 Y12-17f12.q1k chr15 399 135 622821 623085 C 265 73.21 1472 reject_low 3 ALIGNMENT 380 Y12-17f13.p1k chr14 766 194 50448 51007 C 573 91.27 1387 reject_low 1 ALIGNMENT 108 Y12-17f13.p1k chrm 33 206 13208 13383 F 174 95.40 1387 accept 0 ALIGNMENT 640 Y12-17f13.q1k chrm 833 45 16586 17369 C 789 96.20 1419 accept 0 ALIGNMENT 994 Y12-17f14.p1k chr07 1260 17 300140 301389 C 1244 94.53 1310 accept 0 ALIGNMENT 809 Y12-17f14.q1k chr07 6 942 296639 297575 F 937 96.91 1302 accept 0 ALIGNMENT 760 Y12-17f15.q1k chr02 963 28 798523 799451 C 936 95.73 1318 accept 0 ALIGNMENT 748 Y12-17f15.p1k chr02 1 973 794501 795470 F 973 93.53 1272 accept 0 ALIGNMENT 772 Y12-17f16.q1k chr13 18 919 649885 650776 F 902 97.45 1340 accept 0 ALIGNMENT 974 Y12-17f16.p1k chr13 1251 18 652609 653825 C 1234 94.00 1284 accept 0 ALIGNMENT 878 Y12-17f17.q1k chr16 39 1052 525020 526023 F 1014 96.65 1289 accept 0 ALIGNMENT 953 Y12-17f17.p1k chr16 1129 10 528919 530035 C 1120 96.70 1269 accept 0 ALIGNMENT 1003 Y12-17f18.p1k chr12 20 1208 462943 464153 F 1189 95.88 1210 accept 1 ALIGNMENT 957 Y12-17f18.q1k chr12 1159 32 456674 457795 C 1128 96.10 1251 accept 0 ALIGNMENT 957 Y12-17f18.q1k chr12 1159 32 465811 466932 C 1128 96.10 1251 accept 1 ALIGNMENT 1003 Y12-17f18.p1k chr12 20 1208 453806 455016 F 1189 95.88 1210 accept 0 ALIGNMENT 618 Y12-17f19.q1k chr14 18 864 128985 129792 F 847 94.10 1272 accept 0 ALIGNMENT 930 Y12-17f19.p1k chr14 1156 13 132870 134017 C 1144 95.63 1211 accept 0 ALIGNMENT 850 Y12-17f21.p1k chr11 12 1043 496527 497545 F 1032 96.22 1225 accept 0 ALIGNMENT 828 Y12-17f21.q1k chr11 1037 27 500493 501481 C 1011 97.03 1255 accept 0 ALIGNMENT 786 Y12-17f23.p1k chr08 993 15 148973 149934 C 979 96.02 1251 accept 0 ALIGNMENT 764 Y12-17f23.q1k chr08 28 898 144652 145511 F 871 96.90 1252 accept 0 ALIGNMENT 821 Y12-17f24.p1k chr04 21 1065 257427 258446 F 1045 95.22 1197 accept 0 ALIGNMENT 754 Y12-17f24.q1k chr04 970 12 260912 261858 C 959 95.31 1209 accept 0 ALIGNMENT 984 Y12-17g01.p1k chr11 1180 12 413572 414746 C 1169 96.32 1282 accept 0 ALIGNMENT 926 Y12-17g01.q1k chr11 31 1120 409589 410678 F 1090 96.33 1269 accept 0 ALIGNMENT 0 Y12-17g02.q1k chr05 449 62 280675 280674 C 388 0.00 1310 reject_low 2 ALIGNMENT 867 Y12-17g02.q1k chr09 6 977 254675 255643 F 972 97.74 1310 accept_chi 1 ALIGNMENT 673 Y12-17g02.p1k chr09 1027 43 365814 366819 C 985 91.27 1434 accept_chi 0 ALIGNMENT 226 Y12-17g02.q1k chr05 900 450 280224 280674 C 451 84.04 1310 reject_low 2 ALIGNMENT 328 Y12-17g03.q1k chr13 458 42 556629 557040 C 417 94.00 1388 accept 0 ALIGNMENT 924 Y12-17g03.p1k chr13 14 1216 553139 554353 F 1203 93.68 1393 accept 0 ALIGNMENT 925 Y12-17g04.q1k chr08 15 1056 192034 193081 F 1042 96.93 1444 accept 0 ALIGNMENT 142 Y12-17g04.q1k chr08 789 1056 194071 194344 F 268 85.82 1444 reject_low 1 ALIGNMENT 0 Y12-17g04.q1k chr08 62 788 194071 194070 F 727 0.00 1444 reject_low 1 ALIGNMENT 850 Y12-17g04.p1k chr08 991 7 195452 196456 C 985 96.95 1322 accept 0 ALIGNMENT 911 Y12-17g05.p1k chr02 13 1104 746316 747436 F 1092 96.34 1295 accept 0 ALIGNMENT 928 Y12-17g06.p1k chr02 1121 2 503788 504911 C 1120 95.45 1320 accept 0 ALIGNMENT 1000 Y12-17g06.q1k chr02 11 1159 500206 501354 F 1149 96.43 1374 accept 0 ALIGNMENT 938 Y12-17g07.p1k chr14 1196 16 381808 382991 C 1181 95.09 1334 accept 0 ALIGNMENT 416 Y12-17g07.q1k chr14 1 503 379408 379911 F 503 96.02 1254 accept 0 ALIGNMENT 847 Y12-17g08.p1k chr02 1030 5 231195 232226 C 1026 96.20 1278 accept 0 ALIGNMENT 989 Y12-17g08.q1k chr02 30 1199 227297 228493 F 1170 96.67 1363 accept 0 ALIGNMENT 26 Y12-17g09.q1k chr11 324 353 240307 240336 F 30 96.67 1455|0,12 reject_low 5 ALIGNMENT 22 Y12-17g09.q1k chr11 330 374 240400 240444 F 45 84.44 1455|12,0 reject_low 5 ALIGNMENT 0 Y12-17g09.q1k chr13 323 77 354221 354220 C 247 0.00 1455 reject_low 4 ALIGNMENT 0 Y12-17g09.q1k chr11 342 341 240325 240411 F 0 0.00 1455 reject_low 5 ALIGNMENT 0 Y12-17g09.q1k chr11 77 323 240307 240306 F 247 0.00 1455 reject_low 5 ALIGNMENT 0 Y12-17g09.q1k chr08 77 324 365377 365376 F 248 0.00 1455 reject_low 1 ALIGNMENT 40 Y12-17g09.q1k chr08 325 385 365377 365437 F 61 90.16 1455 reject_low 1 ALIGNMENT 0 Y12-17g09.q1k chr07 323 77 70226 70225 C 247 0.00 1455 reject_low 2 ALIGNMENT 0 Y12-17g09.q1k chr08 385 540 365466 365465 F 156 0.00 1455 reject_low 3 ALIGNMENT 27 Y12-17g09.q1k chr08 325 384 365407 365466 F 60 83.33 1455 reject_low 3 ALIGNMENT 22 Y12-17g09.q1k chr13 384 324 354160 354220 C 61 80.33 1455 reject_low 4 ALIGNMENT 0 Y12-17g09.q1k chr07 540 384 70167 70166 C 157 0.00 1455 reject_low 2 ALIGNMENT 557 Y12-17g09.q1k chr07 774 57 377649 378364 C 718 94.57 1455 accept 0 ALIGNMENT 30 Y12-17g09.q1k chr07 383 324 70166 70225 C 60 85.00 1455 reject_low 2 ALIGNMENT 0 Y12-17g09.q1k chr08 77 324 365407 365406 F 248 0.00 1455 reject_low 3 ALIGNMENT 0 Y12-17g09.q1k chr08 386 540 365437 365436 F 155 0.00 1455 reject_low 1 ALIGNMENT 0 Y12-17g09.q1k chr13 540 385 354161 354160 C 156 0.00 1455 reject_low 4 ALIGNMENT 0 Y12-17g09.q1k chr11 375 540 240444 240443 F 166 0.00 1455 reject_low 5 ALIGNMENT 724 Y12-17g10.q1k chr04 6 838 852532 853363 F 833 97.12 1337 accept 0 ALIGNMENT 684 Y12-17g10.p1k chr04 867 36 856277 857093 C 832 96.27 1389 accept 0 ALIGNMENT 428 Y12-17g11.p1k chr15 86 760 23590 24238 F 675 90.67 1405 reject_low 2 ALIGNMENT 460 Y12-17g11.p1k chr09 86 760 17850 18498 F 675 92.00 1405 reject_low 1 ALIGNMENT 173 Y12-17g11.p1k chr07 624 156 1076785 1077246 C 469 80.17 1405 reject_low 4 ALIGNMENT 351 Y12-17g11.p1k chr07 133 688 1068331 1068874 F 556 89.03 1405 reject_low 3 ALIGNMENT 170 Y12-17g11.p1k chr02 624 156 805525 805986 C 469 79.96 1405 reject_low 5 ALIGNMENT 654 Y12-17g11.q1k chr10 790 47 21207 21948 C 744 97.31 1421 accept 0 ALIGNMENT 460 Y12-17g11.p1k chr10 86 760 17833 18481 F 675 92.00 1405 accept 0 ALIGNMENT 686 Y12-17g12.q1k chr16 844 44 871862 872665 C 801 97.00 1382 accept 0 ALIGNMENT 748 Y12-17g12.p1k chr16 31 942 867001 867911 F 912 95.83 1364 accept 0 ALIGNMENT 563 Y12-17g15.p1k chr12 19 881 459515 460396 F 863 90.96 1312 accept 0 ALIGNMENT 895 Y12-17g15.q1k chr12 1061 30 464937 465963 C 1032 96.12 1289 accept 0 ALIGNMENT 0 Y12-17g15.p1k chr12 298 533 468930 468929 F 236 0.00 1312 reject_low 2 ALIGNMENT 0 Y12-17g15.p1k chr12 62 178 489348 489347 F 117 0.00 1312 reject_low 3 ALIGNMENT 0 Y12-17g15.p1k chr12 62 178 485696 485695 F 117 0.00 1312 reject_low 6 ALIGNMENT 0 Y12-17g15.p1k chr12 298 533 485814 485813 F 236 0.00 1312 reject_low 6 ALIGNMENT 895 Y12-17g15.q1k chr12 1061 30 455800 456826 C 1032 96.12 1289 reject_low 1 ALIGNMENT 119 Y12-17g15.p1k chr12 179 297 485696 485814 F 119 100.00 1312 reject_low 6 ALIGNMENT 128 Y12-17g15.p1k chr12 179 312 489348 489481 F 134 98.51 1312 reject_low 3 ALIGNMENT 0 Y12-17g15.p1k chr12 298 533 482162 482161 F 236 0.00 1312 reject_low 5 ALIGNMENT 119 Y12-17g15.p1k chr12 179 297 472464 472582 F 119 100.00 1312 reject_low 4 ALIGNMENT 0 Y12-17g15.p1k chr12 62 178 482044 482043 F 117 0.00 1312 reject_low 5 ALIGNMENT 0 Y12-17g15.p1k chr12 62 178 472464 472463 F 117 0.00 1312 reject_low 4 ALIGNMENT 0 Y12-17g15.p1k chr12 313 533 489481 489480 F 221 0.00 1312 reject_low 3 ALIGNMENT 0 Y12-17g15.p1k chr12 298 533 472582 472581 F 236 0.00 1312 reject_low 4 ALIGNMENT 267 Y12-17g15.p1k chr12 19 297 468652 468930 F 279 99.28 1312 reject_low 2 ALIGNMENT 119 Y12-17g15.p1k chr12 179 297 482044 482162 F 119 100.00 1312 reject_low 5 ALIGNMENT 0 Y12-17g16.p1k chr15 654 373 346403 346402 C 282 0.00 1404 reject_low 4 ALIGNMENT 23 Y12-17g16.p1k chr15 453 417 346549 346585 C 37 94.59 1404 reject_low 5 ALIGNMENT 0 Y12-17g16.p1k chr15 347 77 346574 346573 C 271 0.00 1404 reject_low 3 ALIGNMENT 121 Y12-17g16.p1k chr05 77 231 175385 175539 F 155 93.55 1404 reject_low 2 ALIGNMENT 38 Y12-17g16.p1k chr15 372 303 346402 346471 C 70 88.57 1404 reject_low 4 ALIGNMENT 54 Y12-17g16.p1k chr15 426 348 346495 346573 C 79 92.41 1404 reject_low 3 ALIGNMENT 383 Y12-17g16.p1k chr15 474 55 346414 346833 C 420 98.33 1404 reject_low 1 ALIGNMENT 0 Y12-17g16.p1k chr05 232 654 175539 175538 F 423 0.00 1404 reject_low 2 ALIGNMENT 408 Y12-17g16.p1k chr15 927 315 345943 346540 C 613 91.35 1404 accept 0 ALIGNMENT 0 Y12-17g16.p1k chr15 314 77 346541 346540 C 238 0.00 1404 accept 0 ALIGNMENT 0 Y12-17g16.p1k chr15 302 77 346472 346471 C 226 0.00 1404 reject_low 4 ALIGNMENT 0 Y12-17g16.p1k chr15 416 77 346586 346585 C 340 0.00 1404 reject_low 5 ALIGNMENT 0 Y12-17g16.p1k chr15 654 454 346550 346549 C 201 0.00 1404 reject_low 5 ALIGNMENT 0 Y12-17g16.p1k chr15 654 427 346496 346495 C 228 0.00 1404 reject_low 3 ALIGNMENT 516 Y12-17g16.q1k chr15 55 797 342858 343594 F 743 92.19 1454 accept 0 ALIGNMENT 0 Y12-17g16.p1k chr15 654 475 346415 346414 C 180 0.00 1404 reject_low 1 ALIGNMENT 821 Y12-17g18.q1k chr06 5 949 149952 150893 F 945 97.57 1276 accept 0 ALIGNMENT 626 Y12-17g18.p1k chr06 822 43 154522 155297 C 780 94.87 1428 accept 0 ALIGNMENT 664 Y12-17g19.p1k chr14 937 51 753693 754559 C 887 94.36 1394 accept 0 ALIGNMENT 164 Y12-17g19.p1k chr03 842 72 301777 302532 C 771 76.39 1394 reject_low 1 ALIGNMENT 1005 Y12-17g19.q1k chr14 26 1217 749186 750388 F 1192 95.47 1302 accept 0 ALIGNMENT 626 Y12-17g20.q1k chr03 794 64 101582 102310 C 731 96.99 1401 accept 0 ALIGNMENT 689 Y12-17g20.p1k chr03 36 916 97590 98468 F 881 94.21 1439 accept 0 ALIGNMENT 845 Y12-17g21.q1k chr01 1 1014 62630 63630 F 1014 95.76 1171 accept 0 ALIGNMENT 917 Y12-17g21.p1k chr01 1088 28 67539 68601 C 1061 96.42 1144 accept 0 ALIGNMENT 829 Y12-17g22.q1k chr12 981 30 466328 467276 C 952 97.16 1240 manual 0 ALIGNMENT 829 Y12-17g22.q1k chr12 981 30 457191 458139 C 952 97.16 1240 manual 1 ALIGNMENT 968 Y12-17g22.p1k chr12 15 1140 462362 463481 F 1126 96.45 1179 manual 0 ALIGNMENT 967 Y12-17g22.p1k chr12 15 1134 453225 454339 F 1120 96.52 1179 manual 1 ALIGNMENT 907 Y12-17g23.q1k chr16 1049 25 802258 803279 C 1025 97.76 1195 accept 0 ALIGNMENT 875 Y12-17g23.p1k chr16 19 1000 798039 799015 F 982 97.56 1214 accept 0 ALIGNMENT 878 Y12-17h01.q1k chr12 18 1150 467501 468628 F 1133 94.62 1301 reject_low 2 ALIGNMENT 915 Y12-17h01.p1k chr12 1030 1 454672 455690 C 1030 97.67 1323 reject_low 1 ALIGNMENT 915 Y12-17h01.p1k chr12 1030 1 463809 464827 C 1030 97.67 1323 accept 0 ALIGNMENT 878 Y12-17h01.q1k chr12 18 1150 458364 459491 F 1133 94.62 1301 accept 0 ALIGNMENT 26 Y12-17h02.q1k chrm 19 47 2538 2566 F 29 96.55 1294 reject_low 6 ALIGNMENT 0 Y12-17h02.q1k chrm 185 123 55426 55425 C 63 0.00 1294 reject_low 7 ALIGNMENT 0 Y12-17h02.q1k chrm 82 77 53269 55496 C 6 0.00 1294 reject_low 8 ALIGNMENT 0 Y12-17h02.q1k chrm 185 128 85580 85579 C 58 0.00 1294 reject_low 5 ALIGNMENT 27 Y12-17h02.q1k chrm 122 83 53230 53268 C 40 95.00 1294 reject_low 8 ALIGNMENT 0 Y12-17h02.q1k chrm 185 123 53231 53230 C 63 0.00 1294 reject_low 8 ALIGNMENT 0 Y12-17h02.q1k chrm 134 185 84810 84809 F 52 0.00 1294 reject_low 2 ALIGNMENT 23 Y12-17h02.q1k chrm 127 84 85579 85627 C 44 88.64 1294 reject_low 5 ALIGNMENT 0 Y12-17h02.q1k chrm 62 99 50790 50789 F 38 0.00 1294 reject_low 1 ALIGNMENT 37 Y12-17h02.q1k chrm 122 80 55425 55467 C 43 100.00 1294 reject_low 7 ALIGNMENT 0 Y12-17h02.q1k chrm 83 77 85628 85620 C 7 0.00 1294 reject_low 5 ALIGNMENT 46 Y12-17h02.q1k chrm 70 133 84747 84810 F 64 92.19 1294 reject_low 2 ALIGNMENT 0 Y12-17h02.q1k chrm 123 185 65103 65102 F 63 0.00 1294 reject_low 4 ALIGNMENT 0 Y12-17h02.q1k chrm 123 185 2638 2637 F 63 0.00 1294 reject_low 6 ALIGNMENT 44 Y12-17h02.q1k chrm 71 127 72778 72834 F 57 94.74 1294 reject_low 3 ALIGNMENT 0 Y12-17h02.q1k chrm 79 77 55468 55496 C 3 0.00 1294 reject_low 7 ALIGNMENT 0 Y12-17h02.q1k chrm 128 185 72834 72833 F 58 0.00 1294 reject_low 3 ALIGNMENT 37 Y12-17h02.q1k chrm 70 122 65052 65103 F 53 94.34 1294 reject_low 4 ALIGNMENT 22 Y12-17h02.q1k chrm 76 33 55497 55540 C 44 86.36 1294 reject_low 7,8 ALIGNMENT 184 Y12-17h02.q1k chrm 1 200 6108 6307 F 200 98.50 1294 accept 0 ALIGNMENT 30 Y12-17h02.q1k chrm 84 122 2599 2638 F 39 97.44 1294 reject_low 6 ALIGNMENT 36 Y12-17h02.q1k chrm 76 19 85621 85678 C 58 89.66 1294 reject_low 5 ALIGNMENT 0 Y12-17h02.q1k chrm 48 83 2567 2598 F 36 0.00 1294 reject_low 6 ALIGNMENT 0 Y12-17h02.q1k chrm 147 185 50836 50835 F 39 0.00 1294 reject_low 1 ALIGNMENT 32 Y12-17h02.q1k chrm 100 146 50790 50836 F 47 89.36 1294 reject_low 1 ALIGNMENT 457 Y12-17h03.q1k chr16 5 594 276247 276835 F 590 95.59 1377 accept 0 ALIGNMENT 594 Y12-17h03.p1k chr16 809 25 281827 282610 C 785 93.50 1488 accept 0 ALIGNMENT 0 Y12-17h04.p1k chr05 164 797 575306 575305 F 634 0.00 1514 reject_low 266 ALIGNMENT 0 Y12-17h04.p1k chr04 164 797 1530477 1530476 F 634 0.00 1514 reject_low 265 ALIGNMENT 58 Y12-17h04.p1k chr10 462 348 2101 2215 C 115 86.09 1514 reject_low 423 ALIGNMENT 0 Y12-17h04.p1k chr09 140 132 2224 2244 C 9 0.00 1514 reject_low 398 ALIGNMENT 0 Y12-17h04.q1k chr12 781 797 9692 9739 F 17 0.00 1446 reject_low 32 ALIGNMENT 110 Y12-17h04.p1k chr06 282 60 893 1115 C 223 84.30 1514 reject_low 199 ALIGNMENT 0 Y12-17h04.p1k chr12 62 347 1069624 1069623 F 286 0.00 1514 reject_low 324 ALIGNMENT 0 Y12-17h04.p1k chr14 797 463 1611 1610 C 335 0.00 1514 reject_low 59 ALIGNMENT 0 Y12-17h04.p1k chr13 797 128 1679 1678 C 670 0.00 1514 reject_low 319 ALIGNMENT 31 Y12-17h04.p1k chr08 398 451 560417 560470 F 54 87.04 1514 reject_low 387 ALIGNMENT 208 Y12-17h04.p1k chr05 462 28 1614 2048 C 435 84.14 1514 reject_low 95 ALIGNMENT 114 Y12-17h04.q1k chr12 149 28 1067125 1067246 C 122 98.36 1446 reject_low 10 ALIGNMENT 0 Y12-17h04.p1k chr06 797 67 894 893 C 731 0.00 1514 reject_low 302 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1543 1542 C 335 0.00 1514 reject_low 44 ALIGNMENT 62 Y12-17h04.q1k chr16 798 892 5064 5157 F 95 89.47 1446 reject_low 8 ALIGNMENT 0 Y12-17h04.p1k chr12 797 460 7474 7473 C 338 0.00 1514 reject_low 212 ALIGNMENT 716 Y12-17h04.q1k chr15 780 28 1086121 1086873 C 753 98.67 1446 reject_low 4 ALIGNMENT 93 Y12-17h04.p1k chr05 246 37 1470 1679 C 210 82.38 1514 reject_low 230 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946422 946421 F 335 0.00 1514 reject_low 47 ALIGNMENT 228 Y12-17h04.p1k chr10 354 17 1669 2007 C 338 90.53 1514 reject_low 50 ALIGNMENT 0 Y12-17h04.p1k chr12 62 206 1069627 1069626 F 145 0.00 1514 reject_low 223 ALIGNMENT 0 Y12-17h04.p1k chr07 67 797 1089394 1089393 F 731 0.00 1514 reject_low 366 ALIGNMENT 109 Y12-17h04.p1k chr09 451 216 2021 2256 C 236 84.32 1514 reject_low 420 ALIGNMENT 0 Y12-17h04.p1k chr04 460 797 1530341 1530340 F 338 0.00 1514 reject_low 222 ALIGNMENT 103 Y12-17h04.p1k chr13 246 17 1667 1897 C 230 82.61 1514 reject_low 171 ALIGNMENT 0 Y12-17h04.p1k chr13 797 283 1668 1667 C 515 0.00 1514 reject_low 192 ALIGNMENT 58 Y12-17h04.p1k chr09 462 348 2118 2232 C 115 86.09 1514 reject_low 422 ALIGNMENT 0 Y12-17h04.p1k chr12 388 387 1070024 1076290 F 0 0.00 1514 reject_low 395 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1069954 1069953 F 335 0.00 1514 reject_low 129 ALIGNMENT 0 Y12-17h04.p1k chr14 797 427 1575 1574 C 371 0.00 1514 reject_low 100 ALIGNMENT 34 Y12-17h04.p1k chr16 91 23 1494 1562 C 69 84.06 1514 reject_low 338 ALIGNMENT 103 Y12-17h04.p1k chr08 17 246 560611 560841 F 230 82.61 1514 reject_low 169 ALIGNMENT 76 Y12-17h04.p1k chr16 33 246 946281 946494 F 214 79.44 1514 reject_low 258 ALIGNMENT 0 Y12-17h04.p1k chr04 62 383 1530086 1530085 F 322 0.00 1514 reject_low 341 ALIGNMENT 79 Y12-17h04.p1k chr04 37 215 1530315 1530493 F 179 82.12 1514 reject_low 248 ALIGNMENT 0 Y12-17h04.p1k chr12 82 83 2207 7345 C 0 0.00 1514 reject_low 396 ALIGNMENT 0 Y12-17h04.p1k chr02 797 464 1882 1881 C 334 0.00 1514 reject_low 242 ALIGNMENT 126 Y12-17h04.p1k chr02 282 37 1486 1731 C 246 84.96 1514 reject_low 161 ALIGNMENT 0 Y12-17h04.p1k chr16 62 145 945962 945961 F 84 0.00 1514 reject_low 163 ALIGNMENT 0 Y12-17h04.p1k chr05 273 62 2055 2054 C 212 0.00 1514 reject_low 339 ALIGNMENT 49 Y12-17h04.p1k chr08 348 462 560439 560553 F 115 83.48 1514 reject_low 326 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 7399 7398 C 335 0.00 1514 reject_low 124 ALIGNMENT 43 Y12-17h04.p1k chr12 451 384 2126 2193 C 68 89.71 1514|0,4 reject_low 394 ALIGNMENT 0 Y12-17h04.p1k chr06 216 62 1247 1246 C 155 0.00 1514 reject_low 296 ALIGNMENT 118 Y12-17h04.p1k chr08 246 17 1651 1881 C 230 84.78 1514 reject_low 157 ALIGNMENT 698 Y12-17h04.q1k chr14 28 780 4354 5106 F 753 97.88 1446 reject_low 7 ALIGNMENT 173 Y12-17h04.p1k chr16 462 110 1555 1907 C 353 84.70 1514 reject_low 127 ALIGNMENT 29 Y12-17h04.p1k chr10 66 37 1669 1698 C 30 100.00 1514 reject_low 389 ALIGNMENT 0 Y12-17h04.p1k chr14 797 460 1686 1685 C 338 0.00 1514 reject_low 180 ALIGNMENT 170 Y12-17h04.p1k chr12 110 462 1069602 1069954 F 353 84.42 1514 reject_low 129 ALIGNMENT 223 Y12-17h04.p1k chr12 462 74 1827 2215 C 389 87.40 1514|0,9 reject_low 396 ALIGNMENT 64 Y12-17h04.p1k chr06 462 217 1001 1246 C 246 77.64 1514 reject_low 296 ALIGNMENT 64 Y12-17h04.p1k chr12 463 290 2042 2215 C 174 81.03 1514 reject_low 409 ALIGNMENT 0 Y12-17h04.p1k chr14 797 128 1586 1585 C 670 0.00 1514 reject_low 320 ALIGNMENT 0 Y12-17h04.p1k chr04 452 797 1530261 1530260 F 346 0.00 1514 reject_low 244 ALIGNMENT 0 Y12-17h04.p1k chr07 355 797 1089394 1089393 F 443 0.00 1514 reject_low 67 ALIGNMENT 214 Y12-17h04.p1k chr13 426 33 1667 2060 C 394 86.29 1514 reject_low 99 ALIGNMENT 0 Y12-17h04.p1k chr02 797 463 1919 1918 C 335 0.00 1514 reject_low 280 ALIGNMENT 61 Y12-17h04.p1k chr12 290 463 1069602 1069775 F 174 80.46 1514 reject_low 294 ALIGNMENT 93 Y12-17h04.p1k chr10 246 37 1669 1878 C 210 82.38 1514 reject_low 232 ALIGNMENT 698 Y12-17h04.q1k chr16 28 780 4263 5015 F 753 97.88 1446 reject_low 8 ALIGNMENT 43 Y12-17h04.p1k chr13 451 384 2002 2069 C 68 89.71 1514 reject_low 346 ALIGNMENT 0 Y12-17h04.p1k chr06 125 62 1266 1265 C 64 0.00 1514 reject_low 209 ALIGNMENT 52 Y12-17h04.p1k chr12 348 462 1076287 1076401 F 115 84.35 1514|4,0 reject_low 392,404 ALIGNMENT 0 Y12-17h04.p1k chr08 460 797 560694 560693 F 338 0.00 1514 reject_low 196 ALIGNMENT 0 Y12-17h04.p1k chr09 215 168 2257 2244 C 48 0.00 1514 reject_low 420 ALIGNMENT 0 Y12-17h04.p1k chr10 797 355 1670 1669 C 443 0.00 1514 reject_low 50 ALIGNMENT 0 Y12-17h04.p1k chr16 62 289 945962 945961 F 228 0.00 1514 reject_low 288 ALIGNMENT 0 Y12-17h04.p1k chr12 319 797 1076689 1076688 F 479 0.00 1514 reject_low 151 ALIGNMENT 0 Y12-17h04.p1k chr12 797 464 7686 7685 C 334 0.00 1514 reject_low 377 ALIGNMENT 0 Y12-17h04.p1k chr02 797 452 1822 1821 C 346 0.00 1514 reject_low 197 ALIGNMENT 220 Y12-17h04.p1k chr10 462 105 1849 2206 C 358 88.83 1514 reject_low 93 ALIGNMENT 0 Y12-17h04.p1k chr13 797 216 1663 1662 C 582 0.00 1514 reject_low 253 ALIGNMENT 0 Y12-17h04.p1k chr09 797 452 2166 2165 C 346 0.00 1514 reject_low 424 ALIGNMENT 0 Y12-17h04.p1k chr16 128 797 946483 946482 F 670 0.00 1514 reject_low 300 ALIGNMENT 866 Y12-17h04.p1k chr04 38 1321 1530064 1531340 F 1284 89.80 1514 reject_low 20 ALIGNMENT 0 Y12-17h04.p1k chr05 62 253 574893 574892 F 192 0.00 1514 reject_low 235 ALIGNMENT 0 Y12-17h04.p1k chr06 104 96 1107 1127 C 9 0.00 1514 reject_low 413 ALIGNMENT 0 Y12-17h04.p1k chr04 62 206 1530089 1530088 F 145 0.00 1514 reject_low 222 ALIGNMENT 205 Y12-17h04.p1k chr12 426 33 1683 2076 C 394 85.53 1514 reject_low 109 ALIGNMENT 94 Y12-17h04.p1k chr02 463 224 1845 2084 C 240 82.08 1514 reject_low 229 ALIGNMENT 0 Y12-17h04.p1k chr12 283 797 1076689 1076688 F 515 0.00 1514 reject_low 191 ALIGNMENT 0 Y12-17h04.p1k chr05 62 109 574893 574892 F 48 0.00 1514 reject_low 122 ALIGNMENT 0 Y12-17h04.p1k chr16 216 797 946499 946498 F 582 0.00 1514 reject_low 186 ALIGNMENT 33 Y12-17h04.p1k chr15 398 463 1089229 1089294 F 66 84.85 1514 reject_low 381 ALIGNMENT 0 Y12-17h04.p1k chr08 797 355 1652 1651 C 443 0.00 1514 reject_low 134 ALIGNMENT 0 Y12-17h04.p1k chr02 797 463 1523 1522 C 335 0.00 1514 reject_low 36 ALIGNMENT 43 Y12-17h04.p1k chr16 384 451 945984 946051 F 68 89.71 1514 reject_low 350 ALIGNMENT 0 Y12-17h04.p1k chr10 104 62 2207 2206 C 43 0.00 1514 reject_low 93 ALIGNMENT 0 Y12-17h04.p1k chr08 252 62 1933 1932 C 191 0.00 1514 reject_low 259 ALIGNMENT 146 Y12-17h04.p1k chr02 467 154 1769 2082 C 314 84.08 1514 reject_low 135 ALIGNMENT 920 Y12-17h04.p1k chr12 1292 17 860 2129 C 1276 91.46 1514 reject_low 15 ALIGNMENT 0 Y12-17h04.p1k chr07 391 797 1089394 1089393 F 407 0.00 1514 reject_low 78 ALIGNMENT 0 Y12-17h04.p1k chr12 797 247 1684 1683 C 551 0.00 1514 reject_low 257 ALIGNMENT 0 Y12-17h04.p1k chr10 797 164 1681 1680 C 634 0.00 1514 reject_low 304 ALIGNMENT 47 Y12-17h04.p1k chr06 451 238 1048 1261 C 214 76.17 1514 reject_low 340 ALIGNMENT 33 Y12-17h04.p1k chr13 463 398 2026 2091 C 66 84.85 1514 reject_low 379 ALIGNMENT 221 Y12-17h04.p1k chr10 462 33 1777 2206 C 430 85.35 1514 reject_low 87 ALIGNMENT 0 Y12-17h04.p1k chr12 118 119 2207 7345 C 0 0.00 1514 reject_low 397 ALIGNMENT 0 Y12-17h04.p1k chr08 62 253 560417 560416 F 192 0.00 1514 reject_low 234 ALIGNMENT 0 Y12-17h04.p1k chr12 217 62 7751 7750 C 156 0.00 1514 reject_low 203 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946386 946385 F 335 0.00 1514 reject_low 88 ALIGNMENT 103 Y12-17h04.p1k chr16 246 17 1483 1713 C 230 82.61 1514 reject_low 174 ALIGNMENT 68 Y12-17h04.q1k chr06 798 892 3242 3335 F 95 91.58 1446 reject_low 30 ALIGNMENT 0 Y12-17h04.p1k chr08 62 145 560417 560416 F 84 0.00 1514 reject_low 160 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 1867 1866 C 335 0.00 1514 reject_low 92 ALIGNMENT 0 Y12-17h04.p1k chr04 62 289 1530064 1530063 F 228 0.00 1514 reject_low 293 ALIGNMENT 182 Y12-17h04.p1k chr12 451 110 1874 2215 C 342 85.96 1514|0,9 reject_low 397 ALIGNMENT 0 Y12-17h04.p1k chr05 427 797 575317 575316 F 371 0.00 1514 reject_low 96 ALIGNMENT 140 Y12-17h04.q1k chr16 780 635 944021 944166 C 146 99.32 1446 reject_low 29 ALIGNMENT 0 Y12-17h04.p1k chr12 464 797 1076438 1076437 F 334 0.00 1514 reject_low 412 ALIGNMENT 0 Y12-17h04.q1k chr13 62 634 3887 3886 F 573 0.00 1446 reject_low 33 ALIGNMENT 0 Y12-17h04.p1k chr02 187 62 2085 2084 C 126 0.00 1514 reject_low 197 ALIGNMENT 0 Y12-17h04.p1k chr15 464 797 1089294 1089293 F 334 0.00 1514 reject_low 381 ALIGNMENT 0 Y12-17h04.p1k chr05 464 797 574958 574957 F 334 0.00 1514 reject_low 375 ALIGNMENT 43 Y12-17h04.p1k chr15 384 451 1089251 1089318 F 68 89.71 1514 reject_low 348 ALIGNMENT 47 Y12-17h04.p1k chr05 451 274 1877 2054 C 178 77.53 1514 reject_low 339 ALIGNMENT 0 Y12-17h04.p1k chr05 463 797 575029 575028 F 335 0.00 1514 reject_low 305 ALIGNMENT 0 Y12-17h04.p1k chr15 283 797 1089653 1089652 F 515 0.00 1514 reject_low 194 ALIGNMENT 73 Y12-17h04.p1k chr09 215 37 1681 1859 C 179 81.01 1514 reject_low 262 ALIGNMENT 100 Y12-17h04.p1k chr07 17 282 1089128 1089394 F 266 80.45 1514 reject_low 190 ALIGNMENT 0 Y12-17h04.p1k chr12 216 217 1070032 1076264 F 2 0.00 1514 reject_low 410 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1723 1722 C 335 0.00 1514 reject_low 175 ALIGNMENT 0 Y12-17h04.p1k chr04 62 109 1530064 1530063 F 48 0.00 1514 reject_low 128 ALIGNMENT 101 Y12-17h04.p1k chr12 459 207 1938 2190 C 253 82.21 1514|0,5 reject_low 408 ALIGNMENT 0 Y12-17h04.p1k chr05 62 217 574893 574892 F 156 0.00 1514 reject_low 201 ALIGNMENT 101 Y12-17h04.p1k chr05 207 459 574918 575170 F 253 82.21 1514 reject_low 210 ALIGNMENT 0 Y12-17h04.p1k chr16 464 797 946135 946134 F 334 0.00 1514 reject_low 288 ALIGNMENT 0 Y12-17h04.p1k chr16 797 463 1520 1519 C 335 0.00 1514 reject_low 60 ALIGNMENT 0 Y12-17h04.p1k chr06 797 247 894 893 C 551 0.00 1514 reject_low 165 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1651 1650 C 335 0.00 1514 reject_low 143 ALIGNMENT 43 Y12-17h04.p1k chr09 451 384 2165 2232 C 68 89.71 1514 reject_low 424 ALIGNMENT 71 Y12-17h04.q1k chr15 892 798 1085979 1086072 C 95 92.63 1446 reject_low 4 ALIGNMENT 145 Y12-17h04.p1k chr05 318 25 1470 1763 C 294 84.35 1514 reject_low 137 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 1759 1758 C 335 0.00 1514 reject_low 71 ALIGNMENT 0 Y12-17h04.p1k chr02 797 427 1487 1486 C 371 0.00 1514 reject_low 102 ALIGNMENT 147 Y12-17h04.p1k chr16 37 282 946249 946494 F 246 87.80 1514 reject_low 145 ALIGNMENT 0 Y12-17h04.p1k chr02 797 128 1498 1497 C 670 0.00 1514 reject_low 313 ALIGNMENT 0 Y12-17h04.p1k chr04 62 253 1530064 1530063 F 192 0.00 1514 reject_low 244 ALIGNMENT 0 Y12-17h04.p1k chr14 797 463 1863 1862 C 335 0.00 1514 reject_low 309 ALIGNMENT 0 Y12-17h04.p1k chr08 128 797 560830 560829 F 670 0.00 1514 reject_low 317 ALIGNMENT 0 Y12-17h04.p1k chr05 797 164 1482 1481 C 634 0.00 1514 reject_low 301 ALIGNMENT 0 Y12-17h04.p1k chr10 140 132 2207 2227 C 9 0.00 1514 reject_low 399 ALIGNMENT 0 Y12-17h04.p1k chr12 797 452 7662 7661 C 346 0.00 1514 reject_low 344 ALIGNMENT 0 Y12-17h04.p1k chr14 145 62 1999 1998 C 84 0.00 1514 reject_low 180 ALIGNMENT 0 Y12-17h04.p1k chr07 463 797 1089322 1089321 F 335 0.00 1514 reject_low 123 ALIGNMENT 742 Y12-17h04.q1k chr10 28 780 4725 5478 F 753 99.87 1446 reject_low 2 ALIGNMENT 0 Y12-17h04.p1k chr06 797 355 894 893 C 443 0.00 1514 reject_low 208 ALIGNMENT 0 Y12-17h04.p1k chr16 92 797 946483 946482 F 706 0.00 1514 reject_low 362 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946278 946277 F 335 0.00 1514 reject_low 163 ALIGNMENT 85 Y12-17h04.p1k chr08 33 282 560592 560841 F 250 79.20 1514 reject_low 247 ALIGNMENT 72 Y12-17h04.p1k chr05 451 217 1805 2039 C 235 79.15 1514 reject_low 276 ALIGNMENT 0 Y12-17h04.p1k chr09 176 168 2224 2244 C 9 0.00 1514 reject_low 418 ALIGNMENT 0 Y12-17h04.p1k chr16 797 128 1495 1494 C 670 0.00 1514 reject_low 322 ALIGNMENT 0 Y12-17h04.p1k chr12 797 216 1679 1678 C 582 0.00 1514 reject_low 185 ALIGNMENT 0 Y12-17h04.p1k chr02 797 67 1487 1486 C 731 0.00 1514 reject_low 363 ALIGNMENT 79 Y12-17h04.p1k chr05 37 215 575144 575322 F 179 82.12 1514 reject_low 249 ALIGNMENT 0 Y12-17h04.p1k chr15 452 797 1089318 1089317 F 346 0.00 1514 reject_low 348 ALIGNMENT 208 Y12-17h04.p1k chr16 33 426 946101 946494 F 394 85.79 1514 reject_low 108 ALIGNMENT 0 Y12-17h04.p1k chr14 797 464 1826 1825 C 334 0.00 1514 reject_low 286 ALIGNMENT 0 Y12-17h04.p1k chr06 797 104 893 892 C 694 0.00 1514 reject_low 277 ALIGNMENT 0 Y12-17h04.p1k chr02 797 92 1498 1497 C 706 0.00 1514 reject_low 329 ALIGNMENT 25 Y12-17h04.p1k chr04 23 66 1530445 1530488 F 44 86.36 1514 reject_low 364 ALIGNMENT 214 Y12-17h04.p1k chr16 426 33 1483 1876 C 394 86.29 1514 reject_low 101 ALIGNMENT 0 Y12-17h04.p1k chr12 797 391 1684 1683 C 407 0.00 1514 reject_low 113 ALIGNMENT 148 Y12-17h04.p1k chr09 462 207 1974 2229 C 256 88.28 1514 reject_low 416 ALIGNMENT 0 Y12-17h04.p1k chr12 62 383 1069624 1069623 F 322 0.00 1514 reject_low 345 ALIGNMENT 173 Y12-17h04.p1k chr12 462 110 7398 7750 C 353 84.70 1514 reject_low 124 ALIGNMENT 119 Y12-17h04.p1k chr06 318 105 893 1106 C 214 86.45 1514 reject_low 413 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1615 1614 C 335 0.00 1514 reject_low 95 ALIGNMENT 70 Y12-17h04.p1k chr08 37 163 560704 560830 F 127 85.83 1514 reject_low 268 ALIGNMENT 0 Y12-17h04.p1k chr16 797 67 1484 1483 C 731 0.00 1514 reject_low 372 ALIGNMENT 38 Y12-17h04.p1k chr16 37 91 946429 946483 F 55 90.91 1514 reject_low 362 ALIGNMENT 0 Y12-17h04.p1k chr06 797 176 893 892 C 622 0.00 1514 reject_low 121 ALIGNMENT 0 Y12-17h04.p1k chr12 206 62 7726 7725 C 145 0.00 1514 reject_low 212 ALIGNMENT 0 Y12-17h04.p1k chr05 62 397 574893 574892 F 336 0.00 1514 reject_low 375 ALIGNMENT 143 Y12-17h04.p1k chr04 33 318 1530203 1530488 F 286 84.62 1514 reject_low 148 ALIGNMENT 150 Y12-17h04.p1k chr02 390 17 1486 1860 C 374 81.55 1514 reject_low 133 ALIGNMENT 0 Y12-17h04.p1k chr14 109 62 1999 1998 C 48 0.00 1514 reject_low 126 ALIGNMENT 96 Y12-17h04.p1k chr08 426 177 1651 1900 C 250 81.60 1514 reject_low 233 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1069990 1069989 F 335 0.00 1514 reject_low 62 ALIGNMENT 70 Y12-17h04.p1k chr06 451 162 976 1265 C 290 76.55 1514 reject_low 278 ALIGNMENT 117 Y12-17h04.q1k chr05 28 149 4437 4558 F 122 99.18 1446 reject_low 9 ALIGNMENT 34 Y12-17h04.p1k chr12 23 91 1069947 1070015 F 69 84.06 1514|0,9 reject_low 393 ALIGNMENT 0 Y12-17h04.p1k chr09 77 62 2299 2298 C 16 0.00 1514 reject_low 398,416,418,420,422,424,426 ALIGNMENT 0 Y12-17h04.p1k chr16 397 62 1908 1907 C 336 0.00 1514 reject_low 382 ALIGNMENT 99 Y12-17h04.p1k chr06 354 27 893 1220 C 328 78.05 1514 reject_low 208 ALIGNMENT 0 Y12-17h04.p1k chr05 247 797 575317 575316 F 551 0.00 1514 reject_low 167 ALIGNMENT 0 Y12-17h04.p1k chr12 145 62 7751 7750 C 84 0.00 1514 reject_low 178 ALIGNMENT 58 Y12-17h04.p1k chr05 163 37 1481 1607 C 127 82.68 1514 reject_low 301 ALIGNMENT 0 Y12-17h04.p1k chr15 464 797 1089402 1089401 F 334 0.00 1514 reject_low 295 ALIGNMENT 90 Y12-17h04.p1k chr12 451 254 7553 7750 C 198 83.84 1514 reject_low 237 ALIGNMENT 865 Y12-17h04.p1k chr12 1322 38 6473 7750 C 1285 89.73 1514 reject_low 11 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1069738 1069737 F 335 0.00 1514 reject_low 324 ALIGNMENT 0 Y12-17h04.p1k chr15 62 253 1089229 1089228 F 192 0.00 1514 reject_low 246 ALIGNMENT 79 Y12-17h04.p1k chr08 37 215 560668 560846 F 179 82.12 1514 reject_low 251 ALIGNMENT 0 Y12-17h04.p1k chr16 247 797 946494 946493 F 551 0.00 1514 reject_low 258 ALIGNMENT 25 Y12-17h04.p1k chr07 23 66 1089351 1089394 F 44 86.36 1514 reject_low 366 ALIGNMENT 0 Y12-17h04.p1k chr02 797 463 1559 1558 C 335 0.00 1514 reject_low 76 ALIGNMENT 224 Y12-17h04.p1k chr02 462 17 1630 2076 C 446 84.98 1514 reject_low 51 ALIGNMENT 21 Y12-17h04.p1k chr10 131 83 2228 2276 C 49 81.63 1514|6,0 reject_low 399,417,419,421,423,425,427 ALIGNMENT 0 Y12-17h04.p1k chr15 67 797 1089653 1089652 F 731 0.00 1514 reject_low 371 ALIGNMENT 0 Y12-17h04.p1k chr10 797 67 1670 1669 C 731 0.00 1514 reject_low 389 ALIGNMENT 53 Y12-17h04.p1k chr15 37 127 1089552 1089642 F 91 86.81 1514 reject_low 321 ALIGNMENT 186 Y12-17h04.p1k chr16 17 390 946120 946494 F 374 84.76 1514 reject_low 111 ALIGNMENT 216 Y12-17h04.p1k chr16 354 17 1483 1821 C 338 89.35 1514 reject_low 70 ALIGNMENT 241 Y12-17h04.p1k chr05 74 462 574893 575281 F 389 88.95 1514 reject_low 55 ALIGNMENT 0 Y12-17h04.p1k chr16 797 464 1843 1842 C 334 0.00 1514 reject_low 382 ALIGNMENT 263 Y12-17h04.p1k chr09 462 17 1722 2168 C 446 87.89 1514 reject_low 40 ALIGNMENT 0 Y12-17h04.p1k chr05 67 797 575317 575316 F 731 0.00 1514 reject_low 365 ALIGNMENT 102 Y12-17h04.p1k chr12 462 218 7506 7750 C 245 82.86 1514 reject_low 203 ALIGNMENT 97 Y12-17h04.p1k chr08 462 217 1687 1932 C 246 82.11 1514 reject_low 226 ALIGNMENT 0 Y12-17h04.p1k chr14 383 62 1977 1976 C 322 0.00 1514 reject_low 347 ALIGNMENT 34 Y12-17h04.p1k chr02 462 404 2026 2084 C 59 88.14 1514 reject_low 384 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1076653 1076652 F 335 0.00 1514 reject_low 393 ALIGNMENT 0 Y12-17h04.p1k chr13 797 464 1919 1918 C 334 0.00 1514 reject_low 285 ALIGNMENT 53 Y12-17h04.p1k chr12 127 37 7337 7427 C 91 86.81 1514|9,0 reject_low 397 ALIGNMENT 214 Y12-17h04.p1k chr05 33 426 574924 575317 F 394 86.29 1514 reject_low 96 ALIGNMENT 0 Y12-17h04.p1k chr12 62 397 1069602 1069601 F 336 0.00 1514 reject_low 378 ALIGNMENT 0 Y12-17h04.p1k chr12 247 253 1070027 1076264 F 7 0.00 1514 reject_low 402 ALIGNMENT 0 Y12-17h04.p1k chr08 164 797 560830 560829 F 634 0.00 1514 reject_low 268 ALIGNMENT 0 Y12-17h04.p1k chr05 797 247 1471 1470 C 551 0.00 1514 reject_low 230 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946350 946349 F 335 0.00 1514 reject_low 82 ALIGNMENT 0 Y12-17h04.p1k chr16 319 797 946494 946493 F 479 0.00 1514 reject_low 119 ALIGNMENT 0 Y12-17h04.p1k chr08 92 797 560830 560829 F 706 0.00 1514 reject_low 333 ALIGNMENT 0 Y12-17h04.p1k chr05 797 319 1471 1470 C 479 0.00 1514 reject_low 137 ALIGNMENT 210 Y12-17h04.p1k chr05 17 390 574943 575317 F 374 86.90 1514 reject_low 77 ALIGNMENT 98 Y12-17h04.p1k chr12 207 459 1069627 1069879 F 253 81.82 1514 reject_low 223 ALIGNMENT 0 Y12-17h04.p1k chr05 797 427 1471 1470 C 371 0.00 1514 reject_low 46 ALIGNMENT 28 Y12-17h04.p1k chr12 66 23 1683 1726 C 44 88.64 1514 reject_low 356 ALIGNMENT 698 Y12-17h04.q1k chr07 780 28 1085862 1086614 C 753 97.88 1446 reject_low 6 ALIGNMENT 32 Y12-17h04.p1k chr08 463 408 1866 1921 C 56 87.50 1514 reject_low 385 ALIGNMENT 0 Y12-17h04.p1k chr16 62 217 945962 945961 F 156 0.00 1514 reject_low 207 ALIGNMENT 0 Y12-17h04.p1k chr05 216 62 2040 2039 C 155 0.00 1514 reject_low 276 ALIGNMENT 121 Y12-17h04.p1k chr05 462 126 1722 2058 C 337 80.42 1514 reject_low 175 ALIGNMENT 0 Y12-17h04.p1k chr12 347 319 2194 7325 C 29 0.00 1514 reject_low 403 ALIGNMENT 0 Y12-17h04.p1k chr12 387 388 2190 7328 C 0 0.00 1514 reject_low 394 ALIGNMENT 263 Y12-17h04.p1k chr16 17 462 946012 946458 F 446 87.89 1514 reject_low 42 ALIGNMENT 0 Y12-17h04.p1k chr12 391 797 1076689 1076688 F 407 0.00 1514 reject_low 84 ALIGNMENT 0 Y12-17h04.p1k chr07 164 797 1089383 1089382 F 634 0.00 1514 reject_low 267 ALIGNMENT 55 Y12-17h04.p1k chr07 348 462 1088992 1089106 F 115 85.22 1514 reject_low 306 ALIGNMENT 222 Y12-17h04.p1k chr16 38 462 945962 946386 F 425 85.65 1514 reject_low 88 ALIGNMENT 0 Y12-17h04.p1k chr16 797 463 1772 1771 C 335 0.00 1514 reject_low 310 ALIGNMENT 34 Y12-17h04.p1k chr12 91 23 7337 7405 C 69 84.06 1514|9,0 reject_low 396 ALIGNMENT 100 Y12-17h04.p1k chr04 17 282 1530222 1530488 F 266 80.45 1514 reject_low 188 ALIGNMENT 0 Y12-17h04.p1k chr13 797 247 1668 1667 C 551 0.00 1514 reject_low 171 ALIGNMENT 90 Y12-17h04.p1k chr07 254 451 1088970 1089167 F 198 83.84 1514 reject_low 236 ALIGNMENT 0 Y12-17h04.q1k chr12 164 150 1067129 1067124 C 15 0.00 1446 reject_low 10 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 1975 1974 C 335 0.00 1514 reject_low 416 ALIGNMENT 0 Y12-17h04.p1k chr16 797 283 1484 1483 C 515 0.00 1514 reject_low 195 ALIGNMENT 33 Y12-17h04.p1k chr04 398 463 1530064 1530129 F 66 84.85 1514 reject_low 374 ALIGNMENT 0 Y12-17h04.q1k chr07 797 781 1085814 1085861 C 17 0.00 1446 reject_low 6 ALIGNMENT 37 Y12-17h04.p1k chr08 91 33 1662 1720 C 59 88.14 1514 reject_low 359 ALIGNMENT 868 Y12-17h04.p1k chr14 1322 38 721 1998 C 1285 89.81 1514 reject_low 19 ALIGNMENT 0 Y12-17h04.p1k chr05 797 391 1471 1470 C 407 0.00 1514 reject_low 140 ALIGNMENT 0 Y12-17h04.p1k chr14 253 62 1999 1998 C 192 0.00 1514 reject_low 239 ALIGNMENT 0 Y12-17h04.q1k chr05 200 255 4590 4585 F 56 0.00 1446 reject_low 9 ALIGNMENT 0 Y12-17h04.p1k chr06 797 452 977 976 C 346 0.00 1514 reject_low 278 ALIGNMENT 0 Y12-17h04.p1k chr05 797 355 1471 1470 C 443 0.00 1514 reject_low 117 ALIGNMENT 0 Y12-17h04.p1k chr05 797 464 1902 1901 C 334 0.00 1514 reject_low 390 ALIGNMENT 0 Y12-17h04.p1k chr12 319 347 1070027 1076286 F 29 0.00 1514 reject_low 404 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 2083 2082 C 335 0.00 1514 reject_low 274 ALIGNMENT 0 Y12-17h04.p1k chr08 247 797 560841 560840 F 551 0.00 1514 reject_low 169 ALIGNMENT 0 Y12-17h04.p1k chr15 460 797 1089542 1089541 F 338 0.00 1514 reject_low 184 ALIGNMENT 0 Y12-17h04.p1k chr09 219 62 2289 2288 C 158 0.00 1514 reject_low 217 ALIGNMENT 133 Y12-17h04.p1k chr10 282 17 1669 1935 C 266 84.59 1514 reject_low 139 ALIGNMENT 0 Y12-17h04.p1k chr02 117 62 2083 2082 C 56 0.00 1514 reject_low 146 ALIGNMENT 214 Y12-17h04.p1k chr07 33 426 1089001 1089394 F 394 86.29 1514 reject_low 97 ALIGNMENT 53 Y12-17h04.p1k chr05 37 127 575216 575306 F 91 86.81 1514 reject_low 315 ALIGNMENT 25 Y12-17h04.p1k chr13 66 23 1667 1710 C 44 86.36 1514 reject_low 369 ALIGNMENT 0 Y12-17h04.p1k chr05 463 797 575281 575280 F 335 0.00 1514 reject_low 55 ALIGNMENT 0 Y12-17h04.p1k chr16 797 427 1484 1483 C 371 0.00 1514 reject_low 101 ALIGNMENT 25 Y12-17h04.p1k chr14 66 23 1574 1617 C 44 86.36 1514 reject_low 370 ALIGNMENT 0 Y12-17h04.p1k chr14 797 460 1722 1721 C 338 0.00 1514 reject_low 214 ALIGNMENT 100 Y12-17h04.p1k chr12 17 282 1076423 1076689 F 266 80.45 1514 reject_low 191 ALIGNMENT 0 Y12-17h04.p1k chr02 797 463 2027 2026 C 335 0.00 1514 reject_low 384 ALIGNMENT 33 Y12-17h04.p1k chr16 398 463 945962 946027 F 66 84.85 1514 reject_low 383 ALIGNMENT 0 Y12-17h04.p1k chr14 797 283 1575 1574 C 515 0.00 1514 reject_low 193 ALIGNMENT 0 Y12-17h04.p1k chr15 216 797 1089658 1089657 F 582 0.00 1514 reject_low 255 ALIGNMENT 0 Y12-17h04.p1k chr04 62 347 1530086 1530085 F 286 0.00 1514 reject_low 323 ALIGNMENT 0 Y12-17h04.p1k chr08 797 463 1760 1759 C 335 0.00 1514 reject_low 312 ALIGNMENT 34 Y12-17h04.p1k chr08 23 91 560762 560830 F 69 84.06 1514 reject_low 333 ALIGNMENT 210 Y12-17h04.p1k chr16 390 17 1483 1857 C 374 86.90 1514 reject_low 81 ALIGNMENT 79 Y12-17h04.p1k chr12 37 215 1076516 1076694 F 179 82.12 1514 reject_low 252 ALIGNMENT 221 Y12-17h04.p1k chr09 462 33 1794 2223 C 430 85.35 1514 reject_low 86 ALIGNMENT 0 Y12-17h04.p1k chr04 463 797 1530308 1530307 F 335 0.00 1514 reject_low 219 ALIGNMENT 64 Y12-17h04.p1k chr14 463 290 1825 1998 C 174 81.03 1514 reject_low 286 ALIGNMENT 0 Y12-17h04.p1k chr09 797 247 1687 1686 C 551 0.00 1514 reject_low 231 ALIGNMENT 173 Y12-17h04.p1k chr14 462 110 1646 1998 C 353 84.70 1514 reject_low 126 ALIGNMENT 63 Y12-17h04.p1k chr08 290 462 560417 560589 F 173 80.92 1514 reject_low 292 ALIGNMENT 34 Y12-17h04.p1k chr05 23 91 575238 575306 F 69 84.06 1514 reject_low 331 ALIGNMENT 0 Y12-17h04.p1k chr09 797 464 2190 2189 C 334 0.00 1514 reject_low 426 ALIGNMENT 211 Y12-17h04.p1k chr04 33 426 1530095 1530488 F 394 86.04 1514 reject_low 103 ALIGNMENT 0 Y12-17h04.p1k chr07 452 797 1089167 1089166 F 346 0.00 1514 reject_low 236 ALIGNMENT 756 Y12-17h04.p1k chr08 1322 207 798 1906 C 1116 89.96 1514 reject_low 21 ALIGNMENT 33 Y12-17h04.p1k chr12 398 463 1069602 1069667 F 66 84.85 1514 reject_low 378 ALIGNMENT 215 Y12-17h04.p1k chr09 462 17 1758 2204 C 446 84.30 1514 reject_low 71 ALIGNMENT 0 Y12-17h04.p1k chr12 797 319 1684 1683 C 479 0.00 1514 reject_low 120 ALIGNMENT 80 Y12-17h04.p1k chr08 215 17 1646 1845 C 199 80.90 1514 reject_low 228 ALIGNMENT 0 Y12-17h04.p1k chr12 797 164 1695 1694 C 634 0.00 1514 reject_low 290 ALIGNMENT 143 Y12-17h04.p1k chr16 318 33 1483 1768 C 286 84.62 1514 reject_low 155 ALIGNMENT 173 Y12-17h04.p1k chr07 110 462 1088970 1089322 F 353 84.70 1514 reject_low 123 ALIGNMENT 0 Y12-17h04.p1k chr08 283 62 1938 1937 C 222 0.00 1514 reject_low 312 ALIGNMENT 0 Y12-17h04.p1k chr08 463 797 560661 560660 F 335 0.00 1514 reject_low 187 ALIGNMENT 125 Y12-17h04.p1k chr16 146 462 945962 946278 F 317 81.70 1514 reject_low 163 ALIGNMENT 117 Y12-17h04.p1k chr12 146 459 1076265 1076578 F 314 80.89 1514|9,0 reject_low 406 ALIGNMENT 313 Y12-17h04.p1k chr10 426 33 1669 2062 C 394 94.67 1514 reject_low 38 ALIGNMENT 0 Y12-17h04.p1k chr10 407 168 2228 2227 C 240 0.00 1514 reject_low 427 ALIGNMENT 0 Y12-17h04.p1k chr14 797 463 1647 1646 C 335 0.00 1514 reject_low 126 ALIGNMENT 0 Y12-17h04.p1k chr04 452 797 1530153 1530152 F 346 0.00 1514 reject_low 341 ALIGNMENT 192 Y12-17h04.p1k chr08 17 354 560503 560841 F 338 86.98 1514 reject_low 107 ALIGNMENT 0 Y12-17h04.p1k chr07 128 797 1089383 1089382 F 670 0.00 1514 reject_low 316 ALIGNMENT 0 Y12-17h04.p1k chr02 797 468 1770 1769 C 330 0.00 1514 reject_low 135 ALIGNMENT 33 Y12-17h04.p1k chr14 463 398 1933 1998 C 66 84.85 1514 reject_low 380 ALIGNMENT 183 Y12-17h04.p1k chr12 390 17 1683 2057 C 374 84.49 1514 reject_low 113 ALIGNMENT 0 Y12-17h04.p1k chr05 460 797 575170 575169 F 338 0.00 1514 reject_low 210 ALIGNMENT 163 Y12-17h04.p1k chr08 282 33 1651 1900 C 250 89.60 1514 reject_low 132 ALIGNMENT 66 Y12-17h04.p1k chr02 462 296 1918 2084 C 167 82.04 1514 reject_low 280 ALIGNMENT 0 Y12-17h04.p1k chr12 452 797 1069799 1069798 F 346 0.00 1514 reject_low 245 ALIGNMENT 29 Y12-17h04.q1k chr12 199 165 1067094 1067128 C 35 94.29 1446 reject_low 10 ALIGNMENT 0 Y12-17h04.p1k chr15 62 217 1089229 1089228 F 156 0.00 1514 reject_low 221 ALIGNMENT 0 Y12-17h04.p1k chr02 797 283 1487 1486 C 515 0.00 1514 reject_low 161 ALIGNMENT 59 Y12-17h04.p1k chr08 127 37 1662 1752 C 91 89.01 1514 reject_low 298 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946458 946457 F 335 0.00 1514 reject_low 42 ALIGNMENT 0 Y12-17h04.p1k chr12 128 797 1076678 1076677 F 670 0.00 1514 reject_low 318 ALIGNMENT 117 Y12-17h04.p1k chr12 146 459 1069602 1069915 F 314 80.89 1514 reject_low 183 ALIGNMENT 70 Y12-17h04.p1k chr12 37 163 1076552 1076678 F 127 85.83 1514 reject_low 269 ALIGNMENT 137 Y12-17h04.p1k chr10 318 33 1669 1954 C 286 83.92 1514 reject_low 159 ALIGNMENT 0 Y12-17h04.p1k chr05 128 797 575306 575305 F 670 0.00 1514 reject_low 315 ALIGNMENT 0 Y12-17h04.p1k chr16 206 62 1883 1882 C 145 0.00 1514 reject_low 215 ALIGNMENT 0 Y12-17h04.p1k chr16 62 347 945984 945983 F 286 0.00 1514 reject_low 311 ALIGNMENT 0 Y12-17h04.p1k chr07 62 397 1088970 1088969 F 336 0.00 1514 reject_low 376 ALIGNMENT 0 Y12-17h04.p1k chr16 452 797 946303 946302 F 346 0.00 1514 reject_low 118 ALIGNMENT 64 Y12-17h04.p1k chr07 290 463 1088970 1089143 F 174 81.03 1514 reject_low 283 ALIGNMENT 70 Y12-17h04.p1k chr12 37 163 1069889 1070015 F 127 85.83 1514|0,9 reject_low 406 ALIGNMENT 0 Y12-17h04.p1k chr08 176 62 1901 1900 C 115 0.00 1514 reject_low 233 ALIGNMENT 0 Y12-17h04.p1k chr05 62 347 574915 574914 F 286 0.00 1514 reject_low 305 ALIGNMENT 173 Y12-17h04.p1k chr13 462 110 1739 2091 C 353 84.70 1514 reject_low 125 ALIGNMENT 0 Y12-17h04.p1k chr13 383 62 2070 2069 C 322 0.00 1514 reject_low 346 ALIGNMENT 102 Y12-17h04.p1k chr16 218 462 945962 946206 F 245 82.86 1514 reject_low 207 ALIGNMENT 180 Y12-17h04.p1k chr02 354 17 1486 1824 C 338 85.80 1514 reject_low 114 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 7363 7362 C 335 0.00 1514 reject_low 57 ALIGNMENT 0 Y12-17h04.p1k chr08 62 289 560417 560416 F 228 0.00 1514 reject_low 292 ALIGNMENT 0 Y12-17h04.p1k chr10 797 391 1670 1669 C 407 0.00 1514 reject_low 54 ALIGNMENT 0 Y12-17h04.p1k chr13 797 460 1815 1814 C 338 0.00 1514 reject_low 213 ALIGNMENT 260 Y12-17h04.p1k chr12 462 17 1719 2165 C 446 87.67 1514 reject_low 43 ALIGNMENT 0 Y12-17h04.p1k chr13 797 463 1704 1703 C 335 0.00 1514 reject_low 58 ALIGNMENT 698 Y12-17h04.q1k chr05 780 28 571785 572537 C 753 97.88 1446 reject_low 5 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1076401 1076400 F 335 0.00 1514 reject_low 392,404 ALIGNMENT 241 Y12-17h04.p1k chr12 462 74 7362 7750 C 389 88.95 1514 reject_low 57 ALIGNMENT 0 Y12-17h04.p1k chr09 797 468 1898 1897 C 330 0.00 1514 reject_low 398 ALIGNMENT 100 Y12-17h04.p1k chr13 282 17 1667 1933 C 266 80.45 1514 reject_low 192 ALIGNMENT 0 Y12-17h04.q1k chr02 781 797 4358 4405 F 17 0.00 1446 reject_low 34 ALIGNMENT 0 Y12-17h04.p1k chr07 463 797 1089106 1089105 F 335 0.00 1514 reject_low 306 ALIGNMENT 0 Y12-17h04.p1k chr08 62 383 560439 560438 F 322 0.00 1514 reject_low 373 ALIGNMENT 0 Y12-17h04.p1k chr08 62 206 560442 560441 F 145 0.00 1514 reject_low 196 ALIGNMENT 867 Y12-17h04.p1k chr10 1235 33 902 2098 C 1203 91.35 1514 reject_low 24 ALIGNMENT 0 Y12-17h04.p1k chr16 797 319 1484 1483 C 479 0.00 1514 reject_low 155 ALIGNMENT 0 Y12-17h04.p1k chr04 463 797 1530452 1530451 F 335 0.00 1514 reject_low 61 ALIGNMENT 0 Y12-17h04.q1k chr06 62 636 3050 3049 F 575 0.00 1446 reject_low 30 ALIGNMENT 90 Y12-17h04.p1k chr16 254 451 945962 946159 F 198 83.84 1514 reject_low 241 ALIGNMENT 0 Y12-17h04.p1k chr07 464 797 1089143 1089142 F 334 0.00 1514 reject_low 283 ALIGNMENT 0 Y12-17h04.p1k chr16 62 206 945987 945986 F 145 0.00 1514 reject_low 216 ALIGNMENT 178 Y12-17h04.p1k chr12 318 37 1683 1964 C 282 89.01 1514 reject_low 120 ALIGNMENT 0 Y12-17h04.p1k chr04 128 797 1530477 1530476 F 670 0.00 1514 reject_low 314 ALIGNMENT 0 Y12-17h04.p1k chr07 62 109 1088970 1088969 F 48 0.00 1514 reject_low 123 ALIGNMENT 25 Y12-17h04.p1k chr02 66 23 1486 1529 C 44 86.36 1514 reject_low 363 ALIGNMENT 33 Y12-17h04.p1k chr12 463 398 7685 7750 C 66 84.85 1514 reject_low 377 ALIGNMENT 0 Y12-17h04.p1k chr05 62 383 574915 574914 F 322 0.00 1514 reject_low 342 ALIGNMENT 0 Y12-17h04.p1k chr13 797 319 1668 1667 C 479 0.00 1514 reject_low 152 ALIGNMENT 0 Y12-17h04.p1k chr05 89 62 2059 2058 C 28 0.00 1514 reject_low 156 ALIGNMENT 0 Y12-17h04.p1k chr12 67 397 1070027 1076264 F 331 0.00 1514 reject_low 415 ALIGNMENT 34 Y12-17h04.p1k chr14 91 23 1585 1653 C 69 84.06 1514 reject_low 336 ALIGNMENT 143 Y12-17h04.p1k chr13 318 33 1667 1952 C 286 84.62 1514 reject_low 152 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 2047 2046 C 335 0.00 1514 reject_low 217 ALIGNMENT 0 Y12-17h04.p1k chr12 460 797 1069879 1069878 F 338 0.00 1514 reject_low 223 ALIGNMENT 214 Y12-17h04.p1k chr14 426 33 1574 1967 C 394 86.29 1514 reject_low 100 ALIGNMENT 0 Y12-17h04.p1k chr05 797 216 1466 1465 C 582 0.00 1514 reject_low 243 ALIGNMENT 0 Y12-17h04.p1k chr10 797 283 1670 1669 C 515 0.00 1514 reject_low 139 ALIGNMENT 102 Y12-17h04.p1k chr16 462 218 1663 1907 C 245 82.86 1514 reject_low 206 ALIGNMENT 0 Y12-17h04.p1k chr16 797 216 1479 1478 C 582 0.00 1514 reject_low 256 ALIGNMENT 0 Y12-17h04.q1k chr12 62 634 9546 9545 F 573 0.00 1446 reject_low 32 ALIGNMENT 0 Y12-17h04.q1k chr08 781 797 3889 3936 F 17 0.00 1446 reject_low 31 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 1972 1971 C 335 0.00 1514 reject_low 407 ALIGNMENT 87 Y12-17h04.p1k chr15 254 451 1089229 1089426 F 198 83.33 1514 reject_low 246 ALIGNMENT 0 Y12-17h04.p1k chr05 319 797 575317 575316 F 479 0.00 1514 reject_low 149 ALIGNMENT 0 Y12-17h04.p1k chr10 797 468 1881 1880 C 330 0.00 1514 reject_low 399 ALIGNMENT 207 Y12-17h04.p1k chr12 17 390 1076315 1076689 F 374 86.63 1514 reject_low 84 ALIGNMENT 207 Y12-17h04.p1k chr12 17 390 1069652 1070026 F 374 86.63 1514|0,3 reject_low 395 ALIGNMENT 55 Y12-17h04.p1k chr16 462 348 1771 1885 C 115 85.22 1514 reject_low 310 ALIGNMENT 0 Y12-17h04.p1k chr16 355 797 946494 946493 F 443 0.00 1514 reject_low 89 ALIGNMENT 0 Y12-17h04.p1k chr08 797 216 1647 1646 C 582 0.00 1514 reject_low 228 ALIGNMENT 43 Y12-17h04.p1k chr07 384 451 1088992 1089059 F 68 89.71 1514 reject_low 343 ALIGNMENT 216 Y12-17h04.p1k chr12 354 17 7326 7664 C 338 89.35 1514|3,0 reject_low 391 ALIGNMENT 0 Y12-17h04.p1k chr15 355 797 1089653 1089652 F 443 0.00 1514 reject_low 75 ALIGNMENT 0 Y12-17h04.p1k chr16 283 797 946494 946493 F 515 0.00 1514 reject_low 145 ALIGNMENT 213 Y12-17h04.p1k chr12 17 354 1076351 1076689 F 338 89.05 1514 reject_low 74 ALIGNMENT 98 Y12-17h04.p1k chr12 207 459 1076290 1076542 F 253 81.82 1514|5,0 reject_low 411 ALIGNMENT 102 Y12-17h04.p1k chr13 462 218 1847 2091 C 245 82.86 1514 reject_low 204 ALIGNMENT 0 Y12-17h04.p1k chr08 463 797 560553 560552 F 335 0.00 1514 reject_low 326 ALIGNMENT 0 Y12-17h04.p1k chr12 355 797 1076689 1076688 F 443 0.00 1514 reject_low 74 ALIGNMENT 0 Y12-17h04.p1k chr06 89 62 1266 1265 C 28 0.00 1514 reject_low 28 ALIGNMENT 70 Y12-17h04.p1k chr13 163 37 1678 1804 C 127 85.83 1514 reject_low 270 ALIGNMENT 43 Y12-17h04.p1k chr04 384 451 1530086 1530153 F 68 89.71 1514 reject_low 341 ALIGNMENT 0 Y12-17h04.p1k chr06 797 140 893 892 C 658 0.00 1514 reject_low 289 ALIGNMENT 241 Y12-17h04.p1k chr07 74 462 1088970 1089358 F 389 88.95 1514 reject_low 56 ALIGNMENT 0 Y12-17h04.p1k chr12 212 211 1070028 1076294 F 0 0.00 1514 reject_low 411 ALIGNMENT 0 Y12-17h04.p1k chr08 319 797 560841 560840 F 479 0.00 1514 reject_low 136 ALIGNMENT 0 Y12-17h04.p1k chr15 128 797 1089642 1089641 F 670 0.00 1514 reject_low 321 ALIGNMENT 142 Y12-17h04.p1k chr05 462 90 1686 2058 C 373 80.97 1514 reject_low 156 ALIGNMENT 143 Y12-17h04.p1k chr12 318 33 7326 7611 C 286 84.62 1514 reject_low 403 ALIGNMENT 215 Y12-17h04.p1k chr10 462 17 1741 2187 C 446 84.30 1514 reject_low 72 ALIGNMENT 0 Y12-17h04.p1k chr06 273 62 1262 1261 C 212 0.00 1514 reject_low 386 ALIGNMENT 43 Y12-17h04.p1k chr05 384 451 574915 574982 F 68 89.71 1514 reject_low 342 ALIGNMENT 0 Y12-17h04.p1k chr09 797 216 1682 1681 C 582 0.00 1514 reject_low 262 ALIGNMENT 0 Y12-17h04.p1k chr12 253 62 7751 7750 C 192 0.00 1514 reject_low 237 ALIGNMENT 0 Y12-17h04.p1k chr05 391 797 575317 575316 F 407 0.00 1514 reject_low 77 ALIGNMENT 123 Y12-17h04.p1k chr12 459 146 1902 2215 C 314 81.53 1514|0,9 reject_low 405 ALIGNMENT 0 Y12-17h04.p1k chr10 797 427 1670 1669 C 371 0.00 1514 reject_low 38 ALIGNMENT 0 Y12-17h04.p1k chr04 62 217 1530064 1530063 F 156 0.00 1514 reject_low 219 ALIGNMENT 0 Y12-17h04.p1k chr07 463 797 1089214 1089213 F 335 0.00 1514 reject_low 202 ALIGNMENT 75 Y12-17h04.p1k chr02 246 37 1486 1695 C 210 79.52 1514 reject_low 261 ALIGNMENT 99 Y12-17h04.p1k chr12 218 462 1069602 1069846 F 245 82.45 1514 reject_low 220 ALIGNMENT 0 Y12-17h04.p1k chr08 797 247 1652 1651 C 551 0.00 1514 reject_low 157 ALIGNMENT 86 Y12-17h04.p1k chr02 463 260 1881 2084 C 204 82.84 1514 reject_low 242 ALIGNMENT 140 Y12-17h04.q1k chr12 635 780 9546 9691 F 146 99.32 1446 reject_low 32 ALIGNMENT 0 Y12-17h04.p1k chr15 62 397 1089229 1089228 F 336 0.00 1514 reject_low 381 ALIGNMENT 241 Y12-17h04.p1k chr16 462 74 1519 1907 C 389 88.95 1514 reject_low 60 ALIGNMENT 0 Y12-17h04.p1k chr12 62 289 1069602 1069601 F 228 0.00 1514 reject_low 294 ALIGNMENT 0 Y12-17h04.p1k chr10 215 168 2240 2227 C 48 0.00 1514 reject_low 421 ALIGNMENT 0 Y12-17h04.p1k chr10 347 168 2216 2227 C 180 0.00 1514 reject_low 423 ALIGNMENT 0 Y12-17h04.p1k chr05 460 797 575206 575205 F 338 0.00 1514 reject_low 176 ALIGNMENT 0 Y12-17h04.p1k chr04 62 397 1530064 1530063 F 336 0.00 1514 reject_low 374 ALIGNMENT 185 Y12-17h04.p1k chr16 110 451 945962 946303 F 342 86.26 1514 reject_low 118 ALIGNMENT 0 Y12-17h04.p1k chr16 253 62 1908 1907 C 192 0.00 1514 reject_low 240 ALIGNMENT 0 Y12-17h04.p1k chr16 289 62 1908 1907 C 228 0.00 1514 reject_low 287 ALIGNMENT 0 Y12-17h04.p1k chr05 452 797 575090 575089 F 346 0.00 1514 reject_low 235 ALIGNMENT 126 Y12-17h04.p1k chr05 282 37 1470 1715 C 246 84.96 1514 reject_low 162 ALIGNMENT 137 Y12-17h04.q1k chr08 635 780 3743 3888 F 146 98.63 1446 reject_low 31 ALIGNMENT 211 Y12-17h04.p1k chr15 33 426 1089260 1089653 F 394 86.04 1514 reject_low 106 ALIGNMENT 213 Y12-17h04.p1k chr12 17 354 1069688 1070026 F 338 89.05 1514|0,3 reject_low 392 ALIGNMENT 173 Y12-17h04.p1k chr05 110 462 574893 575245 F 353 84.70 1514 reject_low 122 ALIGNMENT 52 Y12-17h04.p1k chr04 348 462 1530086 1530200 F 115 84.35 1514 reject_low 323 ALIGNMENT 0 Y12-17h04.p1k chr13 145 62 2092 2091 C 84 0.00 1514 reject_low 179 ALIGNMENT 0 Y12-17h04.p1k chr07 62 217 1088970 1088969 F 156 0.00 1514 reject_low 202 ALIGNMENT 0 Y12-17h04.p1k chr02 797 460 1598 1597 C 338 0.00 1514 reject_low 94 ALIGNMENT 0 Y12-17h04.p1k chr06 797 463 1002 1001 C 335 0.00 1514 reject_low 296 ALIGNMENT 0 Y12-17h04.p1k chr04 355 797 1530488 1530487 F 443 0.00 1514 reject_low 73 ALIGNMENT 0 Y12-17h04.p1k chr04 247 797 1530488 1530487 F 551 0.00 1514 reject_low 166 ALIGNMENT 33 Y12-17h04.p1k chr05 398 463 574893 574958 F 66 84.85 1514 reject_low 375 ALIGNMENT 0 Y12-17h04.p1k chr10 797 319 1670 1669 C 479 0.00 1514 reject_low 159 ALIGNMENT 103 Y12-17h04.p1k chr05 17 246 575087 575317 F 230 82.61 1514 reject_low 167 ALIGNMENT 0 Y12-17h04.q1k chr12 797 781 1073109 1073156 C 17 0.00 1446 accept_tel 0 ALIGNMENT 33 Y12-17h04.p1k chr12 398 463 1076265 1076330 F 66 84.85 1514 reject_low 415 ALIGNMENT 0 Y12-17h04.p1k chr09 797 355 1687 1686 C 443 0.00 1514 reject_low 49 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 2080 2079 C 335 0.00 1514 reject_low 391,403 ALIGNMENT 0 Y12-17h04.p1k chr08 797 391 1652 1651 C 407 0.00 1514 reject_low 164 ALIGNMENT 0 Y12-17h04.p1k chr12 289 283 2216 7325 C 7 0.00 1514 reject_low 409 ALIGNMENT 25 Y12-17h04.p1k chr12 23 66 1076646 1076689 F 44 86.36 1514 reject_low 368 ALIGNMENT 87 Y12-17h04.p1k chr12 254 451 1069602 1069799 F 198 83.33 1514 reject_low 245 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 1706 1705 C 335 0.00 1514 reject_low 41 ALIGNMENT 43 Y12-17h04.p1k chr10 451 384 2148 2215 C 68 89.71 1514 reject_low 425 ALIGNMENT 0 Y12-17h04.p1k chr16 67 797 946494 946493 F 731 0.00 1514 reject_low 357 ALIGNMENT 0 Y12-17h04.p1k chr16 164 797 946483 946482 F 634 0.00 1514 reject_low 291 ALIGNMENT 0 Y12-17h04.p1k chr12 62 217 1069602 1069601 F 156 0.00 1514 reject_low 220 ALIGNMENT 0 Y12-17h04.p1k chr09 797 391 1687 1686 C 407 0.00 1514 reject_low 53 ALIGNMENT 0 Y12-17h04.p1k chr09 797 319 1687 1686 C 479 0.00 1514 reject_low 158 ALIGNMENT 71 Y12-17h04.q1k chr05 892 798 571643 571736 C 95 92.63 1446 reject_low 5 ALIGNMENT 0 Y12-17h04.p1k chr16 452 797 946051 946050 F 346 0.00 1514 reject_low 350 ALIGNMENT 0 Y12-17h04.p1k chr16 109 62 1908 1907 C 48 0.00 1514 reject_low 127 ALIGNMENT 0 Y12-17h04.p1k chr05 161 62 2059 2058 C 100 0.00 1514 reject_low 227 ALIGNMENT 0 Y12-17h04.p1k chr12 797 67 1684 1683 C 731 0.00 1514 reject_low 356 ALIGNMENT 0 Y12-17h04.p1k chr08 797 464 1867 1866 C 334 0.00 1514 reject_low 385 ALIGNMENT 0 Y12-17h04.p1k chr14 797 92 1586 1585 C 706 0.00 1514 reject_low 336 ALIGNMENT 40 Y12-17h04.p1k chr08 451 384 1842 1909 C 68 88.24 1514 reject_low 358 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 7615 7614 C 335 0.00 1514 reject_low 307 ALIGNMENT 100 Y12-17h04.p1k chr14 282 17 1574 1840 C 266 80.45 1514 reject_low 193 ALIGNMENT 90 Y12-17h04.p1k chr16 451 254 1710 1907 C 198 83.84 1514 reject_low 240 ALIGNMENT 113 Y12-17h04.p1k chr08 207 459 560442 560694 F 253 83.79 1514 reject_low 196 ALIGNMENT 241 Y12-17h04.p1k chr13 462 74 1703 2091 C 389 88.95 1514 reject_low 58 ALIGNMENT 53 Y12-17h04.p1k chr07 37 127 1089293 1089383 F 91 86.81 1514 reject_low 316 ALIGNMENT 59 Y12-17h04.p1k chr05 127 37 1481 1571 C 91 89.01 1514 reject_low 297 ALIGNMENT 0 Y12-17h04.p1k chr15 62 347 1089251 1089250 F 286 0.00 1514 reject_low 325 ALIGNMENT 0 Y12-17h04.p1k chr16 797 452 1711 1710 C 346 0.00 1514 reject_low 240 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 1723 1722 C 335 0.00 1514 reject_low 40 ALIGNMENT 0 Y12-17h04.p1k chr12 464 797 1069775 1069774 F 334 0.00 1514 reject_low 294 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 7507 7506 C 335 0.00 1514 reject_low 203 ALIGNMENT 0 Y12-17h04.p1k chr02 797 216 1482 1481 C 582 0.00 1514 reject_low 198 ALIGNMENT 211 Y12-17h04.p1k chr12 33 426 1069633 1070026 F 394 86.04 1514 reject_low 104 ALIGNMENT 213 Y12-17h04.p1k chr04 17 354 1530150 1530488 F 338 89.05 1514 reject_low 73 ALIGNMENT 0 Y12-17h04.p1k chr05 355 797 575317 575316 F 443 0.00 1514 reject_low 66 ALIGNMENT 103 Y12-17h04.p1k chr06 451 126 940 1265 C 326 78.83 1514 reject_low 209 ALIGNMENT 0 Y12-17h04.p1k chr08 391 797 560841 560840 F 407 0.00 1514 reject_low 110 ALIGNMENT 48 Y12-17h04.p1k chr10 127 33 1680 1774 C 95 84.21 1514 reject_low 328 ALIGNMENT 120 Y12-17h04.p1k chr06 198 17 905 1087 C 182 89.56 1514 reject_low 144 ALIGNMENT 61 Y12-17h04.p1k chr15 290 463 1089229 1089402 F 174 80.46 1514 reject_low 295 ALIGNMENT 214 Y12-17h04.p1k chr12 426 33 7326 7719 C 394 86.29 1514 reject_low 98 ALIGNMENT 33 Y12-17h04.p1k chr12 463 398 2150 2215 C 66 84.85 1514 reject_low 414 ALIGNMENT 0 Y12-17h04.p1k chr15 247 797 1089653 1089652 F 551 0.00 1514 reject_low 173 ALIGNMENT 70 Y12-17h04.p1k chr12 163 37 7337 7463 C 127 85.83 1514|9,0 reject_low 405 ALIGNMENT 170 Y12-17h04.p1k chr15 110 462 1089229 1089581 F 353 84.42 1514 reject_low 130 ALIGNMENT 238 Y12-17h04.p1k chr04 74 462 1530064 1530452 F 389 88.69 1514 reject_low 61 ALIGNMENT 0 Y12-17h04.p1k chr13 253 62 2092 2091 C 192 0.00 1514 reject_low 238 ALIGNMENT 210 Y12-17h04.p1k chr12 390 17 7326 7700 C 374 86.90 1514|3,0 reject_low 394 ALIGNMENT 55 Y12-17h04.p1k chr05 348 462 574915 575029 F 115 85.22 1514 reject_low 305 ALIGNMENT 0 Y12-17h04.p1k chr07 62 383 1088992 1088991 F 322 0.00 1514 reject_low 343 ALIGNMENT 287 Y12-17h04.p1k chr05 462 33 1506 1935 C 430 90.47 1514 reject_low 39 ALIGNMENT 53 Y12-17h04.p1k chr16 127 37 1494 1584 C 91 86.81 1514 reject_low 322 ALIGNMENT 0 Y12-17h04.p1k chr02 797 452 1678 1677 C 346 0.00 1514 reject_low 131 ALIGNMENT 0 Y12-17h04.p1k chr10 797 452 2005 2004 C 346 0.00 1514 reject_low 421 ALIGNMENT 0 Y12-17h04.p1k chr02 360 62 2056 2055 C 299 0.00 1514 reject_low 281 ALIGNMENT 79 Y12-17h04.p1k chr15 37 215 1089480 1089658 F 179 82.12 1514 reject_low 255 ALIGNMENT 90 Y12-17h04.p1k chr13 451 254 1894 2091 C 198 83.84 1514 reject_low 238 ALIGNMENT 120 Y12-17h04.p1k chr16 459 146 1594 1907 C 314 81.21 1514 reject_low 181 ALIGNMENT 938 Y12-17h04.p1k chr16 17 1322 946048 947347 F 1306 91.27 1514 reject_low 12 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 1831 1830 C 335 0.00 1514 reject_low 64 ALIGNMENT 120 Y12-17h04.p1k chr05 146 459 574893 575206 F 314 81.21 1514 reject_low 176 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1579 1578 C 335 0.00 1514 reject_low 52 ALIGNMENT 32 Y12-17h04.p1k chr10 463 408 2172 2227 C 56 87.50 1514 reject_low 427 ALIGNMENT 99 Y12-17h04.p1k chr06 426 58 893 1261 C 369 77.24 1514 reject_low 225 ALIGNMENT 0 Y12-17h04.p1k chr16 797 164 1495 1494 C 634 0.00 1514 reject_low 273 ALIGNMENT 151 Y12-17h04.p1k chr02 318 37 1486 1767 C 282 85.82 1514 reject_low 142 ALIGNMENT 0 Y12-17h04.p1k chr12 109 62 7751 7750 C 48 0.00 1514 reject_low 124 ALIGNMENT 70 Y12-17h04.p1k chr04 37 163 1530351 1530477 F 127 85.83 1514 reject_low 265 ALIGNMENT 0 Y12-17h04.p1k chr12 217 216 2216 7320 C 2 0.00 1514 reject_low 407 ALIGNMENT 0 Y12-17h04.p1k chr05 62 206 574918 574917 F 145 0.00 1514 reject_low 210 ALIGNMENT 68 Y12-17h04.q1k chr08 798 892 3937 4030 F 95 91.58 1446 reject_low 31 ALIGNMENT 0 Y12-17h04.p1k chr04 464 797 1530237 1530236 F 334 0.00 1514 reject_low 293 ALIGNMENT 95 Y12-17h04.p1k chr16 17 215 946300 946499 F 199 83.42 1514 reject_low 186 ALIGNMENT 129 Y12-17h04.p1k chr08 390 141 1651 1900 C 250 85.60 1514 reject_low 164 ALIGNMENT 143 Y12-17h04.p1k chr14 318 33 1574 1859 C 286 84.62 1514 reject_low 153 ALIGNMENT 0 Y12-17h04.p1k chr08 797 164 1663 1662 C 634 0.00 1514 reject_low 200 ALIGNMENT 326 Y12-17h04.p1k chr02 462 17 1522 1968 C 446 92.60 1514 reject_low 36 ALIGNMENT 0 Y12-17h04.p1k chr05 62 289 574893 574892 F 228 0.00 1514 reject_low 282 ALIGNMENT 73 Y12-17h04.p1k chr10 215 37 1664 1842 C 179 81.01 1514 reject_low 263 ALIGNMENT 25 Y12-17h04.p1k chr12 23 66 1069983 1070026 F 44 86.36 1514 reject_low 415 ALIGNMENT 101 Y12-17h04.p1k chr12 459 207 7473 7725 C 253 82.21 1514 reject_low 212 ALIGNMENT 201 Y12-17h04.p1k chr12 354 17 1683 2021 C 338 87.87 1514 reject_low 91 ALIGNMENT 0 Y12-17h04.p1k chr12 352 351 1070024 1076290 F 0 0.00 1514 reject_low 392 ALIGNMENT 0 Y12-17h04.p1k chr13 206 62 2067 2066 C 145 0.00 1514 reject_low 213 ALIGNMENT 79 Y12-17h04.p1k chr13 215 37 1662 1840 C 179 82.12 1514 reject_low 253 ALIGNMENT 0 Y12-17h04.q1k chr09 781 797 5496 5543 F 17 0.00 1446 reject_low 1 ALIGNMENT 207 Y12-17h04.p1k chr15 17 390 1089279 1089653 F 374 86.63 1514 reject_low 85 ALIGNMENT 0 Y12-17h04.p1k chr13 797 452 2003 2002 C 346 0.00 1514 reject_low 346 ALIGNMENT 0 Y12-17h04.p1k chr04 319 797 1530488 1530487 F 479 0.00 1514 reject_low 148 ALIGNMENT 53 Y12-17h04.p1k chr14 127 37 1585 1675 C 91 86.81 1514 reject_low 320 ALIGNMENT 917 Y12-17h04.p1k chr05 1321 17 618 1916 C 1305 90.73 1514 reject_low 13 ALIGNMENT 32 Y12-17h04.p1k chr09 463 408 2189 2244 C 56 87.50 1514 reject_low 426 ALIGNMENT 207 Y12-17h04.p1k chr04 17 390 1530114 1530488 F 374 86.63 1514 reject_low 83 ALIGNMENT 0 Y12-17h04.p1k chr07 216 797 1089399 1089398 F 582 0.00 1514 reject_low 250 ALIGNMENT 114 Y12-17h04.p1k chr02 451 188 1821 2084 C 264 83.33 1514 reject_low 197 ALIGNMENT 0 Y12-17h04.p1k chr13 289 62 2092 2091 C 228 0.00 1514 reject_low 285 ALIGNMENT 64 Y12-17h04.p1k chr16 290 463 945962 946135 F 174 81.03 1514 reject_low 288 ALIGNMENT 61 Y12-17h04.p1k chr02 463 361 1953 2055 C 103 88.35 1514 reject_low 281 ALIGNMENT 70 Y12-17h04.p1k chr16 163 37 1494 1620 C 127 85.83 1514 reject_low 273 ALIGNMENT 0 Y12-17h04.p1k chr12 283 289 1070027 1076264 F 7 0.00 1514 reject_low 412 ALIGNMENT 142 Y12-17h04.p1k chr09 451 177 1949 2223 C 275 85.82 1514 reject_low 418 ALIGNMENT 70 Y12-17h04.p1k chr02 163 37 1497 1623 C 127 85.83 1514 reject_low 264 ALIGNMENT 0 Y12-17h04.p1k chr05 797 128 1482 1481 C 670 0.00 1514 reject_low 297 ALIGNMENT 0 Y12-17h04.p1k chr16 427 797 946494 946493 F 371 0.00 1514 reject_low 108 ALIGNMENT 894 Y12-17h04.p1k chr08 38 1322 560417 561694 F 1285 90.51 1514 reject_low 14 ALIGNMENT 0 Y12-17h04.p1k chr08 460 797 560730 560729 F 338 0.00 1514 reject_low 160 ALIGNMENT 0 Y12-17h04.p1k chr14 797 216 1570 1569 C 582 0.00 1514 reject_low 254 ALIGNMENT 80 Y12-17h04.p1k chr08 163 17 1662 1809 C 147 85.71 1514 reject_low 200 ALIGNMENT 151 Y12-17h04.p1k chr05 390 33 1470 1827 C 358 82.12 1514 reject_low 140 ALIGNMENT 0 Y12-17h04.p1k chr10 797 92 1681 1680 C 706 0.00 1514 reject_low 352 ALIGNMENT 0 Y12-17h04.p1k chr06 797 391 894 893 C 407 0.00 1514 reject_low 260 ALIGNMENT 103 Y12-17h04.p1k chr07 17 246 1089164 1089394 F 230 82.61 1514 reject_low 168 ALIGNMENT 0 Y12-17h04.p1k chr12 460 797 1076542 1076541 F 338 0.00 1514 reject_low 411 ALIGNMENT 0 Y12-17h04.p1k chr12 460 797 1069915 1069914 F 338 0.00 1514 reject_low 183 ALIGNMENT 167 Y12-17h04.p1k chr08 354 68 1651 1937 C 287 87.46 1514 reject_low 134 ALIGNMENT 0 Y12-17h04.p1k chr02 259 62 2085 2084 C 198 0.00 1514 reject_low 242 ALIGNMENT 0 Y12-17h04.p1k chr12 797 427 7327 7326 C 371 0.00 1514 reject_low 98 ALIGNMENT 0 Y12-17h04.p1k chr12 83 82 1070007 1076273 F 0 0.00 1514 reject_low 393 ALIGNMENT 0 Y12-17h04.p1k chr09 104 62 2224 2223 C 43 0.00 1514 reject_low 92 ALIGNMENT 0 Y12-17h04.p1k chr08 62 109 560417 560416 F 48 0.00 1514 reject_low 115 ALIGNMENT 0 Y12-17h04.p1k chr02 153 62 2083 2082 C 92 0.00 1514 reject_low 135 ALIGNMENT 210 Y12-17h04.p1k chr14 390 17 1574 1948 C 374 86.90 1514 reject_low 80 ALIGNMENT 0 Y12-17h04.p1k chr08 427 797 560841 560840 F 371 0.00 1514 reject_low 116 ALIGNMENT 120 Y12-17h04.p1k chr12 459 146 7437 7750 C 314 81.21 1514 reject_low 178 ALIGNMENT 0 Y12-17h04.p1k chr07 427 797 1089394 1089393 F 371 0.00 1514 reject_low 97 ALIGNMENT 0 Y12-17h04.p1k chr12 797 92 1695 1694 C 706 0.00 1514 reject_low 361 ALIGNMENT 0 Y12-17h04.p1k chr14 797 164 1586 1585 C 634 0.00 1514 reject_low 271 ALIGNMENT 25 Y12-17h04.p1k chr16 66 23 1483 1526 C 44 86.36 1514 reject_low 372 ALIGNMENT 61 Y12-17h04.p1k chr04 290 463 1530064 1530237 F 174 80.46 1514 reject_low 293 ALIGNMENT 0 Y12-17h04.p1k chr07 464 797 1089035 1089034 F 334 0.00 1514 reject_low 376 ALIGNMENT 57 Y12-17h04.p1k chr12 127 33 1694 1788 C 95 87.37 1514 reject_low 299 ALIGNMENT 0 Y12-17h04.p1k chr12 797 452 2127 2126 C 346 0.00 1514 reject_low 394 ALIGNMENT 0 Y12-17h04.p1k chr12 351 352 2190 7328 C 0 0.00 1514 reject_low 391 ALIGNMENT 0 Y12-17h04.p1k chr13 797 391 1668 1667 C 407 0.00 1514 reject_low 79 ALIGNMENT 65 Y12-17h04.q1k chr02 798 892 4406 4499 F 95 90.53 1446 reject_low 34 ALIGNMENT 68 Y12-17h04.p1k chr05 462 238 1830 2054 C 225 79.11 1514 reject_low 279 ALIGNMENT 33 Y12-17h04.p1k chr16 463 398 1842 1907 C 66 84.85 1514 reject_low 382 ALIGNMENT 233 Y12-17h04.p1k chr05 462 27 1578 2013 C 436 86.01 1514 reject_low 52 ALIGNMENT 0 Y12-17h04.p1k chr13 797 427 1668 1667 C 371 0.00 1514 reject_low 99 ALIGNMENT 0 Y12-17h04.p1k chr13 797 460 1779 1778 C 338 0.00 1514 reject_low 179 ALIGNMENT 0 Y12-17h04.p1k chr08 452 797 560506 560505 F 346 0.00 1514 reject_low 373 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1507 1506 C 335 0.00 1514 reject_low 39 ALIGNMENT 65 Y12-17h04.q1k chr12 798 892 9740 9833 F 95 90.53 1446 reject_low 32 ALIGNMENT 0 Y12-17h04.p1k chr10 797 128 1681 1680 C 670 0.00 1514 reject_low 328 ALIGNMENT 70 Y12-17h04.p1k chr09 462 256 2082 2288 C 207 80.19 1514 reject_low 274 ALIGNMENT 133 Y12-17h04.p1k chr09 282 17 1686 1952 C 266 84.59 1514 reject_low 138 ALIGNMENT 0 Y12-17h04.p1k chr06 797 199 906 905 C 599 0.00 1514 reject_low 144 ALIGNMENT 140 Y12-17h04.q1k chr12 635 780 4011 4156 F 146 99.32 1446 reject_low 11 ALIGNMENT 70 Y12-17h04.p1k chr05 37 163 575180 575306 F 127 85.83 1514 reject_low 266 ALIGNMENT 98 Y12-17h04.p1k chr15 207 459 1089254 1089506 F 253 81.82 1514 reject_low 224 ALIGNMENT 99 Y12-17h04.p1k chr15 218 462 1089229 1089473 F 245 82.45 1514 reject_low 221 ALIGNMENT 52 Y12-17h04.p1k chr15 348 462 1089251 1089365 F 115 84.35 1514 reject_low 325 ALIGNMENT 0 Y12-17h04.p1k chr05 92 797 575306 575305 F 706 0.00 1514 reject_low 331 ALIGNMENT 245 Y12-17h04.p1k chr09 390 37 1686 2039 C 354 91.24 1514 reject_low 53 ALIGNMENT 79 Y12-17h04.p1k chr12 37 215 1069853 1070031 F 179 82.12 1514|0,4 reject_low 410,411 ALIGNMENT 0 Y12-17h04.p1k chr12 155 154 1070007 1076273 F 0 0.00 1514 reject_low 406 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1076509 1076508 F 335 0.00 1514 reject_low 410 ALIGNMENT 0 Y12-17h04.p1k chr08 452 797 560614 560613 F 346 0.00 1514 reject_low 234 ALIGNMENT 216 Y12-17h04.p1k chr13 354 17 1667 2005 C 338 89.35 1514 reject_low 68 ALIGNMENT 146 Y12-17h04.p1k chr02 462 118 1738 2082 C 345 82.61 1514 reject_low 146 ALIGNMENT 87 Y12-17h04.p1k chr12 254 451 1076265 1076462 F 198 83.33 1514 reject_low 402 ALIGNMENT 0 Y12-17h04.p1k chr10 797 247 1670 1669 C 551 0.00 1514 reject_low 232 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 1850 1849 C 335 0.00 1514 reject_low 93 ALIGNMENT 0 Y12-17h04.p1k chr12 62 145 1069602 1069601 F 84 0.00 1514 reject_low 183 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1831 1830 C 335 0.00 1514 reject_low 279 ALIGNMENT 0 Y12-17h04.p1k chr05 237 62 2055 2054 C 176 0.00 1514 reject_low 279 ALIGNMENT 0 Y12-17h04.p1k chr08 463 797 560805 560804 F 335 0.00 1514 reject_low 45 ALIGNMENT 0 Y12-17h04.p1k chr10 206 168 2213 2227 C 39 0.00 1514 reject_low 417 ALIGNMENT 0 Y12-17h04.q1k chr06 781 797 3194 3241 F 17 0.00 1446 reject_low 30 ALIGNMENT 0 Y12-17h04.p1k chr12 164 797 1076678 1076677 F 634 0.00 1514 reject_low 269 ALIGNMENT 102 Y12-17h04.p1k chr12 462 218 1971 2215 C 245 82.86 1514 reject_low 407 ALIGNMENT 120 Y12-17h04.p1k chr14 459 146 1685 1998 C 314 81.21 1514 reject_low 180 ALIGNMENT 0 Y12-17h04.p1k chr08 797 319 1652 1651 C 479 0.00 1514 reject_low 112 ALIGNMENT 0 Y12-17h04.q1k chr16 797 781 943973 944020 C 17 0.00 1446 reject_low 29 ALIGNMENT 901 Y12-17h04.p1k chr02 1298 33 657 1915 C 1266 91.07 1514 reject_low 16 ALIGNMENT 41 Y12-17h04.p1k chr09 91 37 1697 1751 C 55 92.73 1514 reject_low 351 ALIGNMENT 137 Y12-17h04.q1k chr02 635 780 4212 4357 F 146 98.63 1446 reject_low 34 ALIGNMENT 0 Y12-17h04.p1k chr02 797 463 1631 1630 C 335 0.00 1514 reject_low 51 ALIGNMENT 0 Y12-17h04.p1k chr08 797 452 1807 1806 C 346 0.00 1514 reject_low 353 ALIGNMENT 181 Y12-17h04.p1k chr16 37 318 946213 946494 F 282 89.36 1514 reject_low 119 ALIGNMENT 0 Y12-17h04.p1k chr13 797 463 1956 1955 C 335 0.00 1514 reject_low 308 ALIGNMENT 217 Y12-17h04.p1k chr02 459 37 1597 2019 C 423 85.34 1514 reject_low 94 ALIGNMENT 263 Y12-17h04.p1k chr10 462 17 1705 2151 C 446 87.89 1514 reject_low 41 ALIGNMENT 0 Y12-17h04.p1k chr10 797 452 2149 2148 C 346 0.00 1514 reject_low 425 ALIGNMENT 0 Y12-17h04.p1k chr09 797 452 2022 2021 C 346 0.00 1514 reject_low 420 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 1742 1741 C 335 0.00 1514 reject_low 72 ALIGNMENT 25 Y12-17h04.p1k chr08 23 66 560798 560841 F 44 86.36 1514 reject_low 367 ALIGNMENT 0 Y12-17h04.p1k chr05 464 797 575066 575065 F 334 0.00 1514 reject_low 282 ALIGNMENT 143 Y12-17h04.p1k chr12 33 318 1069741 1070026 F 286 84.62 1514 reject_low 404 ALIGNMENT 0 Y12-17h04.p1k chr06 797 464 1073 1072 C 334 0.00 1514 reject_low 386 ALIGNMENT 103 Y12-17h04.p1k chr14 246 17 1574 1804 C 230 82.61 1514 reject_low 172 ALIGNMENT 0 Y12-17h04.p1k chr12 464 797 1069667 1069666 F 334 0.00 1514 reject_low 378 ALIGNMENT 226 Y12-17h04.p1k chr16 74 462 945962 946350 F 389 87.66 1514 reject_low 82 ALIGNMENT 0 Y12-17h04.p1k chr08 347 62 1910 1909 C 286 0.00 1514 reject_low 353 ALIGNMENT 213 Y12-17h04.p1k chr15 17 354 1089315 1089653 F 338 89.05 1514 reject_low 75 ALIGNMENT 97 Y12-17h04.p1k chr05 462 162 1758 2058 C 301 79.40 1514 reject_low 227 ALIGNMENT 0 Y12-17h04.p1k chr12 427 797 1076689 1076688 F 371 0.00 1514 reject_low 105 ALIGNMENT 0 Y12-17h04.p1k chr09 797 283 1687 1686 C 515 0.00 1514 reject_low 138 ALIGNMENT 34 Y12-17h04.p1k chr02 91 23 1497 1565 C 69 84.06 1514 reject_low 329 ALIGNMENT 55 Y12-17h04.p1k chr16 348 462 945984 946098 F 115 85.22 1514 reject_low 311 ALIGNMENT 210 Y12-17h04.p1k chr13 390 17 1667 2041 C 374 86.90 1514 reject_low 79 ALIGNMENT 0 Y12-17h04.p1k chr12 119 118 1070007 1076273 F 0 0.00 1514 reject_low 400 ALIGNMENT 53 Y12-17h04.p1k chr13 127 37 1678 1768 C 91 86.81 1514 reject_low 319 ALIGNMENT 0 Y12-17h04.p1k chr04 283 797 1530488 1530487 F 515 0.00 1514 reject_low 188 ALIGNMENT 64 Y12-17h04.p1k chr12 163 37 1694 1820 C 127 84.25 1514 reject_low 290 ALIGNMENT 79 Y12-17h04.p1k chr07 37 215 1089221 1089399 F 179 82.12 1514 reject_low 250 ALIGNMENT 0 Y12-17h04.p1k chr04 463 797 1530200 1530199 F 335 0.00 1514 reject_low 323 ALIGNMENT 0 Y12-17h04.p1k chr08 62 397 560417 560416 F 336 0.00 1514 reject_low 387 ALIGNMENT 103 Y12-17h04.p1k chr15 17 246 1089423 1089653 F 230 82.61 1514 reject_low 173 ALIGNMENT 0 Y12-17h04.q1k chr14 781 797 5107 5154 F 17 0.00 1446 reject_low 7 ALIGNMENT 206 Y12-17h04.p1k chr08 318 60 1651 1909 C 259 94.59 1514 reject_low 112 ALIGNMENT 43 Y12-17h04.p1k chr12 384 451 1076287 1076354 F 68 89.71 1514|4,0 reject_low 395 ALIGNMENT 143 Y12-17h04.p1k chr07 33 318 1089109 1089394 F 286 84.62 1514 reject_low 150 ALIGNMENT 0 Y12-17h04.q1k chr08 797 781 558426 558473 C 17 0.00 1446 reject_low 35 ALIGNMENT 0 Y12-17h04.p1k chr12 347 62 7729 7728 C 286 0.00 1514 reject_low 307 ALIGNMENT 0 Y12-17h04.p1k chr02 403 62 2085 2084 C 342 0.00 1514 reject_low 384 ALIGNMENT 48 Y12-17h04.p1k chr09 127 33 1697 1791 C 95 84.21 1514 reject_low 327 ALIGNMENT 0 Y12-17h04.p1k chr12 452 797 1076462 1076461 F 346 0.00 1514 reject_low 402 ALIGNMENT 0 Y12-17h04.p1k chr12 216 797 1076694 1076693 F 582 0.00 1514 reject_low 252 ALIGNMENT 87 Y12-17h04.p1k chr04 254 451 1530064 1530261 F 198 83.33 1514 reject_low 244 ALIGNMENT 0 Y12-17h04.p1k chr12 797 460 1939 1938 C 338 0.00 1514 reject_low 408 ALIGNMENT 98 Y12-17h04.p1k chr04 207 459 1530089 1530341 F 253 81.82 1514 reject_low 222 ALIGNMENT 0 Y12-17h04.p1k chr08 797 452 1843 1842 C 346 0.00 1514 reject_low 358 ALIGNMENT 137 Y12-17h04.q1k chr08 780 635 558474 558619 C 146 98.63 1446 reject_low 35 ALIGNMENT 0 Y12-17h04.p1k chr07 62 253 1088970 1088969 F 192 0.00 1514 reject_low 236 ALIGNMENT 120 Y12-17h04.p1k chr07 146 459 1088970 1089283 F 314 81.21 1514 reject_low 177 ALIGNMENT 0 Y12-17h04.q1k chr16 781 797 5016 5063 F 17 0.00 1446 reject_low 8 ALIGNMENT 0 Y12-17h04.p1k chr12 464 797 1076330 1076329 F 334 0.00 1514 reject_low 415 ALIGNMENT 79 Y12-17h04.p1k chr14 215 37 1569 1747 C 179 82.12 1514 reject_low 254 ALIGNMENT 25 Y12-17h04.p1k chr12 66 23 7326 7369 C 44 86.36 1514 reject_low 414 ALIGNMENT 216 Y12-17h04.p1k chr05 17 354 574979 575317 F 338 89.35 1514 reject_low 66 ALIGNMENT 0 Y12-17h04.p1k chr10 176 168 2207 2227 C 9 0.00 1514 reject_low 419 ALIGNMENT 0 Y12-17h04.p1k chr02 797 355 1487 1486 C 443 0.00 1514 reject_low 114 ALIGNMENT 0 Y12-17h04.p1k chr13 347 62 2070 2069 C 286 0.00 1514 reject_low 308 ALIGNMENT 0 Y12-17h04.p1k chr07 463 797 1089358 1089357 F 335 0.00 1514 reject_low 56 ALIGNMENT 43 Y12-17h04.p1k chr14 451 384 1909 1976 C 68 89.71 1514 reject_low 347 ALIGNMENT 29 Y12-17h04.q1k chr05 165 199 4555 4589 F 35 94.29 1446 reject_low 9 ALIGNMENT 142 Y12-17h04.p1k chr10 451 177 1932 2206 C 275 85.82 1514 reject_low 419 ALIGNMENT 0 Y12-17h04.p1k chr10 383 168 2216 2227 C 216 0.00 1514 reject_low 425 ALIGNMENT 0 Y12-17h04.q1k chr10 781 797 5479 5526 F 17 0.00 1446 reject_low 2 ALIGNMENT 0 Y12-17h04.p1k chr13 797 67 1668 1667 C 731 0.00 1514 reject_low 369 ALIGNMENT 269 Y12-17h04.p1k chr05 462 60 1542 1944 C 403 90.57 1514 reject_low 44 ALIGNMENT 0 Y12-17h04.p1k chr07 247 797 1089394 1089393 F 551 0.00 1514 reject_low 168 ALIGNMENT 76 Y12-17h04.p1k chr12 246 33 1683 1896 C 214 79.44 1514 reject_low 257 ALIGNMENT 0 Y12-17h04.p1k chr15 62 109 1089229 1089228 F 48 0.00 1514 reject_low 130 ALIGNMENT 0 Y12-17h04.p1k chr16 797 464 1735 1734 C 334 0.00 1514 reject_low 287 ALIGNMENT 0 Y12-17h04.p1k chr10 797 464 2173 2172 C 334 0.00 1514 reject_low 427 ALIGNMENT 0 Y12-17h04.p1k chr13 797 452 1895 1894 C 346 0.00 1514 reject_low 238 ALIGNMENT 0 Y12-17h04.p1k chr05 309 62 2055 2054 C 248 0.00 1514 reject_low 390 ALIGNMENT 0 Y12-17h04.p1k chr08 283 797 560841 560840 F 515 0.00 1514 reject_low 247 ALIGNMENT 0 Y12-17h04.p1k chr05 283 797 575317 575316 F 515 0.00 1514 reject_low 189 ALIGNMENT 0 Y12-17h04.p1k chr12 452 797 1076354 1076353 F 346 0.00 1514 reject_low 395 ALIGNMENT 0 Y12-17h04.p1k chr12 211 212 2186 7324 C 0 0.00 1514 reject_low 408 ALIGNMENT 0 Y12-17h04.p1k chr14 206 62 1974 1973 C 145 0.00 1514 reject_low 214 ALIGNMENT 0 Y12-17h04.q1k chr12 62 634 4011 4010 F 573 0.00 1446 reject_low 11 ALIGNMENT 0 Y12-17h04.p1k chr09 122 123 2290 2253 C 0 0.00 1514 reject_low 416,418,420,422,424,426 ALIGNMENT 0 Y12-17h04.p1k chr12 452 797 1069691 1069690 F 346 0.00 1514 reject_low 345 ALIGNMENT 100 Y12-17h04.p1k chr15 17 282 1089387 1089653 F 266 80.45 1514 reject_low 194 ALIGNMENT 0 Y12-17h04.p1k chr16 391 797 946494 946493 F 407 0.00 1514 reject_low 111 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 1814 1813 C 335 0.00 1514 reject_low 65 ALIGNMENT 120 Y12-17h04.p1k chr13 459 146 1778 2091 C 314 81.21 1514 reject_low 179 ALIGNMENT 55 Y12-17h04.p1k chr13 462 348 1955 2069 C 115 85.22 1514 reject_low 308 ALIGNMENT 852 Y12-17h04.p1k chr05 38 1231 574893 576080 F 1194 91.12 1514 reject_low 25 ALIGNMENT 0 Y12-17h04.p1k chr16 217 62 1908 1907 C 156 0.00 1514 reject_low 206 ALIGNMENT 204 Y12-17h04.p1k chr16 17 354 946156 946494 F 338 88.17 1514 reject_low 89 ALIGNMENT 0 Y12-17h04.p1k chr14 217 62 1999 1998 C 156 0.00 1514 reject_low 205 ALIGNMENT 137 Y12-17h04.p1k chr09 318 33 1686 1971 C 286 83.92 1514 reject_low 158 ALIGNMENT 0 Y12-17h04.p1k chr12 67 797 1076689 1076688 F 731 0.00 1514 reject_low 368 ALIGNMENT 64 Y12-17h04.p1k chr13 463 290 1918 2091 C 174 81.03 1514 reject_low 285 ALIGNMENT 0 Y12-17h04.p1k chr15 427 797 1089653 1089652 F 371 0.00 1514 reject_low 106 ALIGNMENT 0 Y12-17h04.q1k chr05 797 781 571737 571784 C 17 0.00 1446 reject_low 5 ALIGNMENT 0 Y12-17h04.p1k chr09 797 67 1687 1686 C 731 0.00 1514 reject_low 388 ALIGNMENT 0 Y12-17h04.p1k chr09 797 452 1950 1949 C 346 0.00 1514 reject_low 418 ALIGNMENT 196 Y12-17h04.p1k chr09 467 141 1897 2223 C 327 88.38 1514 reject_low 398 ALIGNMENT 0 Y12-17h04.p1k chr02 797 464 1846 1845 C 334 0.00 1514 reject_low 229 ALIGNMENT 43 Y12-17h04.p1k chr12 451 384 7661 7728 C 68 89.71 1514 reject_low 344 ALIGNMENT 0 Y12-17h04.p1k chr13 797 464 2027 2026 C 334 0.00 1514 reject_low 379 ALIGNMENT 64 Y12-17h04.p1k chr16 463 290 1734 1907 C 174 81.03 1514 reject_low 287 ALIGNMENT 0 Y12-17h04.p1k chr15 463 797 1089365 1089364 F 335 0.00 1514 reject_low 325 ALIGNMENT 170 Y12-17h04.p1k chr12 110 462 1076265 1076617 F 353 84.42 1514|9,0 reject_low 400 ALIGNMENT 0 Y12-17h04.p1k chr15 62 145 1089229 1089228 F 84 0.00 1514 reject_low 184 ALIGNMENT 0 Y12-17h04.p1k chr05 797 452 1878 1877 C 346 0.00 1514 reject_low 339 ALIGNMENT 0 Y12-17h04.p1k chr16 62 109 945962 945961 F 48 0.00 1514 reject_low 118 ALIGNMENT 53 Y12-17h04.p1k chr12 37 127 1076588 1076678 F 91 86.81 1514 reject_low 318 ALIGNMENT 238 Y12-17h04.p1k chr15 74 462 1089229 1089617 F 389 88.69 1514 reject_low 63 ALIGNMENT 100 Y12-17h04.p1k chr12 282 17 7326 7592 C 266 80.45 1514 reject_low 409 ALIGNMENT 0 Y12-17h04.p1k chr08 407 62 1922 1921 C 346 0.00 1514 reject_low 385 ALIGNMENT 0 Y12-17h04.p1k chr10 219 62 2272 2271 C 158 0.00 1514 reject_low 218 ALIGNMENT 0 Y12-17h04.p1k chr04 67 797 1530488 1530487 F 731 0.00 1514 reject_low 364 ALIGNMENT 0 Y12-17h04.p1k chr15 62 383 1089251 1089250 F 322 0.00 1514 reject_low 348 ALIGNMENT 238 Y12-17h04.p1k chr12 74 462 1076265 1076653 F 389 88.69 1514|9,0 reject_low 393 ALIGNMENT 118 Y12-17h04.p1k chr06 246 33 893 1106 C 214 85.98 1514 reject_low 165 ALIGNMENT 37 Y12-17h04.p1k chr08 384 451 560439 560506 F 68 86.76 1514 reject_low 373 ALIGNMENT 0 Y12-17h04.p1k chr16 62 397 945962 945961 F 336 0.00 1514 reject_low 383 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 1720 1719 C 335 0.00 1514 reject_low 43 ALIGNMENT 0 Y12-17h04.p1k chr16 383 62 1886 1885 C 322 0.00 1514 reject_low 349 ALIGNMENT 0 Y12-17h04.p1k chr12 289 62 7751 7750 C 228 0.00 1514 reject_low 284 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946206 946205 F 335 0.00 1514 reject_low 207 ALIGNMENT 102 Y12-17h04.p1k chr07 218 462 1088970 1089214 F 245 82.86 1514 reject_low 202 ALIGNMENT 0 Y12-17h04.p1k chr16 62 383 945984 945983 F 322 0.00 1514 reject_low 350 ALIGNMENT 0 Y12-17h04.p1k chr09 255 62 2289 2288 C 194 0.00 1514 reject_low 274 ALIGNMENT 75 Y12-17h04.p1k chr06 390 28 893 1255 C 363 74.93 1514 reject_low 260 ALIGNMENT 33 Y12-17h04.p1k chr07 398 463 1088970 1089035 F 66 84.85 1514 reject_low 376 ALIGNMENT 0 Y12-17h04.q1k chr16 634 62 944167 944166 C 573 0.00 1446 reject_low 29 ALIGNMENT 53 Y12-17h04.p1k chr02 127 37 1497 1587 C 91 86.81 1514 reject_low 313 ALIGNMENT 0 Y12-17h04.p1k chr14 797 463 1755 1754 C 335 0.00 1514 reject_low 205 ALIGNMENT 0 Y12-17h04.p1k chr12 797 355 1684 1683 C 443 0.00 1514 reject_low 91 ALIGNMENT 33 Y12-17h04.p1k chr06 66 17 893 943 C 50 90.00 1514 reject_low 302 ALIGNMENT 100 Y12-17h04.p1k chr16 282 17 1483 1749 C 266 80.45 1514 reject_low 195 ALIGNMENT 0 Y12-17h04.p1k chr07 452 797 1089059 1089058 F 346 0.00 1514 reject_low 343 ALIGNMENT 0 Y12-17h04.p1k chr05 125 62 2059 2058 C 64 0.00 1514 reject_low 175 ALIGNMENT 68 Y12-17h04.q1k chr16 892 798 943879 943972 C 95 91.58 1446 reject_low 29 ALIGNMENT 34 Y12-17h04.p1k chr07 23 91 1089315 1089383 F 69 84.06 1514 reject_low 332 ALIGNMENT 99 Y12-17h04.p1k chr04 218 462 1530064 1530308 F 245 82.45 1514 reject_low 219 ALIGNMENT 55 Y12-17h04.p1k chr12 462 348 7614 7728 C 115 85.22 1514 reject_low 307 ALIGNMENT 0 Y12-17h04.q1k chr15 797 781 1086073 1086120 C 17 0.00 1446 reject_low 4 ALIGNMENT 0 Y12-17h04.p1k chr15 463 797 1089581 1089580 F 335 0.00 1514 reject_low 130 ALIGNMENT 867 Y12-17h04.p1k chr12 38 1322 1069602 1070879 F 1285 89.81 1514 accept_tel 0 ALIGNMENT 873 Y12-17h04.p1k chr07 38 1322 1088970 1090247 F 1285 89.96 1514 reject_low 18 ALIGNMENT 0 Y12-17h04.p1k chr04 92 797 1530477 1530476 F 706 0.00 1514 reject_low 330 ALIGNMENT 34 Y12-17h04.p1k chr04 23 91 1530409 1530477 F 69 84.06 1514 reject_low 330 ALIGNMENT 196 Y12-17h04.p1k chr02 426 17 1486 1896 C 410 84.15 1514 reject_low 102 ALIGNMENT 0 Y12-17h04.p1k chr08 797 92 1663 1662 C 706 0.00 1514 reject_low 359 ALIGNMENT 0 Y12-17h04.p1k chr04 460 797 1530377 1530376 F 338 0.00 1514 reject_low 182 ALIGNMENT 0 Y12-17h04.p1k chr12 797 452 2019 2018 C 346 0.00 1514 reject_low 401 ALIGNMENT 0 Y12-17h04.p1k chr07 62 206 1088995 1088994 F 145 0.00 1514 reject_low 211 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 1792 1791 C 335 0.00 1514 reject_low 90 ALIGNMENT 0 Y12-17h04.p1k chr05 797 67 1471 1470 C 731 0.00 1514 reject_low 354 ALIGNMENT 845 Y12-17h04.p1k chr13 1165 38 967 2091 C 1128 92.02 1514 reject_low 27 ALIGNMENT 71 Y12-17h04.q1k chr04 892 798 1526814 1526907 C 95 92.63 1446 reject_low 3 ALIGNMENT 228 Y12-17h04.p1k chr09 354 17 1686 2024 C 338 90.53 1514 reject_low 49 ALIGNMENT 55 Y12-17h04.p1k chr12 462 348 2079 2193 C 115 85.22 1514|0,4 reject_low 391,403 ALIGNMENT 148 Y12-17h04.p1k chr10 462 207 1957 2212 C 256 88.28 1514 reject_low 417 ALIGNMENT 0 Y12-17h04.p1k chr02 295 62 2085 2084 C 234 0.00 1514 reject_low 280 ALIGNMENT 70 Y12-17h04.p1k chr07 37 163 1089257 1089383 F 127 85.83 1514 reject_low 267 ALIGNMENT 0 Y12-17h04.p1k chr12 383 62 7729 7728 C 322 0.00 1514 reject_low 344 ALIGNMENT 227 Y12-17h04.p1k chr02 462 33 1558 1987 C 430 85.81 1514 reject_low 76 ALIGNMENT 0 Y12-17h04.p1k chr05 797 92 1482 1481 C 706 0.00 1514 reject_low 360 ALIGNMENT 0 Y12-17h04.p1k chr05 463 797 575245 575244 F 335 0.00 1514 reject_low 122 ALIGNMENT 601 Y12-17h04.q1k chr05 256 892 4586 5220 F 637 98.59 1446 reject_low 9 ALIGNMENT 0 Y12-17h04.p1k chr08 355 797 560841 560840 F 443 0.00 1514 reject_low 107 ALIGNMENT 0 Y12-17h04.p1k chr07 62 347 1088992 1088991 F 286 0.00 1514 reject_low 306 ALIGNMENT 0 Y12-17h04.p1k chr16 145 62 1908 1907 C 84 0.00 1514 reject_low 181 ALIGNMENT 25 Y12-17h04.p1k chr05 23 66 575274 575317 F 44 86.36 1514 reject_low 365 ALIGNMENT 95 Y12-17h04.p1k chr12 215 17 1678 1877 C 199 83.42 1514 reject_low 185 ALIGNMENT 0 Y12-17h04.p1k chr05 62 145 574893 574892 F 84 0.00 1514 reject_low 176 ALIGNMENT 103 Y12-17h04.p1k chr12 246 17 7326 7556 C 230 82.61 1514 reject_low 401 ALIGNMENT 265 Y12-17h04.p1k chr08 74 462 560417 560805 F 389 91.00 1514 reject_low 45 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1759 1758 C 335 0.00 1514 reject_low 227 ALIGNMENT 187 Y12-17h04.p1k chr08 33 426 560448 560841 F 394 84.01 1514 reject_low 116 ALIGNMENT 186 Y12-17h04.p1k chr08 17 390 560467 560841 F 374 84.76 1514 reject_low 110 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1069846 1069845 F 335 0.00 1514 reject_low 220 ALIGNMENT 0 Y12-17h04.p1k chr12 797 464 2151 2150 C 334 0.00 1514 reject_low 414 ALIGNMENT 0 Y12-17h04.p1k chr08 797 283 1652 1651 C 515 0.00 1514 reject_low 132 ALIGNMENT 61 Y12-17h04.p1k chr12 290 463 1076265 1076438 F 174 80.46 1514 reject_low 412 ALIGNMENT 0 Y12-17h04.p1k chr06 797 283 894 893 C 515 0.00 1514 reject_low 199 ALIGNMENT 0 Y12-17h04.p1k chr12 797 452 1875 1874 C 346 0.00 1514 reject_low 397 ALIGNMENT 0 Y12-17h04.p1k chr14 797 452 1802 1801 C 346 0.00 1514 reject_low 239 ALIGNMENT 148 Y12-17h04.p1k chr05 462 58 1650 2054 C 405 80.49 1514 reject_low 143 ALIGNMENT 0 Y12-17h04.p1k chr08 797 463 1724 1723 C 335 0.00 1514 reject_low 259 ALIGNMENT 21 Y12-17h04.p1k chr10 167 119 2228 2276 C 49 81.63 1514|0,7 reject_low 417,419,421,423,425,427 ALIGNMENT 0 Y12-17h04.p1k chr05 216 797 575322 575321 F 582 0.00 1514 reject_low 249 ALIGNMENT 0 Y12-17h04.p1k chr16 797 452 1819 1818 C 346 0.00 1514 reject_low 349 ALIGNMENT 0 Y12-17h04.p1k chr12 253 247 2216 7325 C 7 0.00 1514 reject_low 401 ALIGNMENT 102 Y12-17h04.p1k chr14 462 218 1754 1998 C 245 82.86 1514 reject_low 205 ALIGNMENT 0 Y12-17h04.q1k chr05 150 164 4559 4554 F 15 0.00 1446 reject_low 9 ALIGNMENT 26 Y12-17h04.p1k chr09 167 114 2245 2298 C 54 83.33 1514|0,9 reject_low 416,418,420,422,424,426 ALIGNMENT 0 Y12-17h04.p1k chr07 319 797 1089394 1089393 F 479 0.00 1514 reject_low 150 ALIGNMENT 0 Y12-17h04.p1k chr13 797 355 1668 1667 C 443 0.00 1514 reject_low 68 ALIGNMENT 0 Y12-17h04.p1k chr05 452 797 574982 574981 F 346 0.00 1514 reject_low 342 ALIGNMENT 0 Y12-17h04.p1k chr08 216 797 560846 560845 F 582 0.00 1514 reject_low 251 ALIGNMENT 0 Y12-17h04.p1k chr16 797 463 1664 1663 C 335 0.00 1514 reject_low 206 ALIGNMENT 114 Y12-17h04.p1k chr08 218 462 560417 560661 F 245 84.49 1514 reject_low 187 ALIGNMENT 0 Y12-17h04.p1k chr15 463 797 1089617 1089616 F 335 0.00 1514 reject_low 63 ALIGNMENT 64 Y12-17h04.p1k chr05 290 463 574893 575066 F 174 81.03 1514 reject_low 282 ALIGNMENT 53 Y12-17h04.p1k chr08 37 127 560740 560830 F 91 86.81 1514 reject_low 317 ALIGNMENT 0 Y12-17h04.p1k chr12 460 797 1076578 1076577 F 338 0.00 1514 reject_low 406 ALIGNMENT 0 Y12-17h04.p1k chr14 347 62 1977 1976 C 286 0.00 1514 reject_low 309 ALIGNMENT 0 Y12-17h04.p1k chr07 460 797 1089283 1089282 F 338 0.00 1514 reject_low 177 ALIGNMENT 0 Y12-17h04.p1k chr05 463 797 575137 575136 F 335 0.00 1514 reject_low 201 ALIGNMENT 117 Y12-17h04.p1k chr04 146 459 1530064 1530377 F 314 80.89 1514 reject_low 182 ALIGNMENT 43 Y12-17h04.p1k chr16 451 384 1818 1885 C 68 89.71 1514 reject_low 349 ALIGNMENT 53 Y12-17h04.p1k chr12 37 127 1069925 1070015 F 91 86.81 1514|0,9 reject_low 400 ALIGNMENT 0 Y12-17h04.p1k chr08 67 797 560841 560840 F 731 0.00 1514 reject_low 367 ALIGNMENT 236 Y12-17h04.p1k chr10 462 60 1813 2215 C 403 87.84 1514 reject_low 65 ALIGNMENT 241 Y12-17h04.p1k chr14 462 74 1610 1998 C 389 88.95 1514 reject_low 59 ALIGNMENT 0 Y12-17h04.p1k chr14 289 62 1999 1998 C 228 0.00 1514 reject_low 286 ALIGNMENT 100 Y12-17h04.p1k chr10 462 220 2029 2271 C 243 82.72 1514 reject_low 218 ALIGNMENT 0 Y12-17h04.p1k chr08 206 62 1907 1906 C 145 0.00 1514 reject_low 21 ALIGNMENT 64 Y12-17h04.p1k chr16 37 163 946357 946483 F 127 84.25 1514 reject_low 291 ALIGNMENT 0 Y12-17h04.p1k chr02 797 464 1954 1953 C 334 0.00 1514 reject_low 281 ALIGNMENT 0 Y12-17h04.p1k chr09 407 168 2245 2244 C 240 0.00 1514 reject_low 426 ALIGNMENT 0 Y12-17h04.p1k chr15 463 797 1089473 1089472 F 335 0.00 1514 reject_low 221 ALIGNMENT 101 Y12-17h04.p1k chr16 207 459 945987 946239 F 253 82.21 1514 reject_low 216 ALIGNMENT 0 Y12-17h04.p1k chr08 62 217 560417 560416 F 156 0.00 1514 reject_low 187 ALIGNMENT 0 Y12-17h04.p1k chr15 164 797 1089642 1089641 F 634 0.00 1514 reject_low 272 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 1795 1794 C 335 0.00 1514 reject_low 86 ALIGNMENT 138 Y12-17h04.q1k chr06 637 780 3050 3193 F 144 99.31 1446 reject_low 30 ALIGNMENT 236 Y12-17h04.p1k chr09 462 60 1830 2232 C 403 87.84 1514 reject_low 64 ALIGNMENT 0 Y12-17h04.p1k chr12 397 62 7751 7750 C 336 0.00 1514 reject_low 377 ALIGNMENT 0 Y12-17h04.p1k chr09 797 128 1698 1697 C 670 0.00 1514 reject_low 327 ALIGNMENT 0 Y12-17h04.q1k chr08 62 634 3743 3742 F 573 0.00 1446 reject_low 31 ALIGNMENT 0 Y12-17h04.p1k chr12 797 460 1903 1902 C 338 0.00 1514 reject_low 405 ALIGNMENT 0 Y12-17h04.p1k chr02 797 463 1739 1738 C 335 0.00 1514 reject_low 146 ALIGNMENT 43 Y12-17h04.p1k chr12 384 451 1069624 1069691 F 68 89.71 1514 reject_low 345 ALIGNMENT 90 Y12-17h04.p1k chr12 451 254 2018 2215 C 198 83.84 1514 reject_low 401 ALIGNMENT 0 Y12-17h04.p1k chr10 82 62 2277 2276 C 21 0.00 1514 reject_low 399,417,419,421,423,425,427 ALIGNMENT 0 Y12-17h04.p1k chr05 797 463 1687 1686 C 335 0.00 1514 reject_low 156 ALIGNMENT 34 Y12-17h04.p1k chr15 23 91 1089574 1089642 F 69 84.06 1514 reject_low 337 ALIGNMENT 143 Y12-17h04.p1k chr15 33 318 1089368 1089653 F 286 84.62 1514 reject_low 154 ALIGNMENT 210 Y12-17h04.p1k chr07 17 390 1089020 1089394 F 374 86.90 1514 reject_low 78 ALIGNMENT 74 Y12-17h04.q1k chr10 798 892 5527 5620 F 95 93.68 1446 reject_low 2 ALIGNMENT 0 Y12-17h04.p1k chr16 452 797 946159 946158 F 346 0.00 1514 reject_low 241 ALIGNMENT 197 Y12-17h04.p1k chr08 110 462 560417 560769 F 353 86.97 1514 reject_low 115 ALIGNMENT 28 Y12-17h04.p1k chr08 66 23 1651 1694 C 44 88.64 1514 reject_low 355 ALIGNMENT 103 Y12-17h04.p1k chr04 17 246 1530258 1530488 F 230 82.61 1514 reject_low 166 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 2030 2029 C 335 0.00 1514 reject_low 218 ALIGNMENT 64 Y12-17h04.p1k chr12 463 290 7577 7750 C 174 81.03 1514 reject_low 284 ALIGNMENT 196 Y12-17h04.p1k chr10 467 141 1880 2206 C 327 88.38 1514 reject_low 399 ALIGNMENT 99 Y12-17h04.p1k chr12 218 462 1076265 1076509 F 245 82.45 1514 reject_low 410 ALIGNMENT 0 Y12-17h04.p1k chr12 397 67 2216 7325 C 331 0.00 1514 reject_low 414 ALIGNMENT 93 Y12-17h04.p1k chr08 254 451 560417 560614 F 198 84.34 1514 reject_low 234 ALIGNMENT 601 Y12-17h04.q1k chr12 892 256 1066463 1067097 C 637 98.59 1446 reject_low 10 ALIGNMENT 219 Y12-17h04.p1k chr12 462 38 1791 2215 C 425 85.41 1514 reject_low 90 ALIGNMENT 70 Y12-17h04.p1k chr10 462 256 2065 2271 C 207 80.19 1514 reject_low 275 ALIGNMENT 0 Y12-17h04.q1k chr08 634 62 558620 558619 C 573 0.00 1446 reject_low 35 ALIGNMENT 0 Y12-17h04.p1k chr10 255 62 2272 2271 C 194 0.00 1514 reject_low 275 ALIGNMENT 0 Y12-17h04.p1k chr15 62 289 1089229 1089228 F 228 0.00 1514 reject_low 295 ALIGNMENT 0 Y12-17h04.p1k chr06 237 62 1262 1261 C 176 0.00 1514 reject_low 340 ALIGNMENT 56 Y12-17h04.p1k chr09 163 33 1697 1827 C 131 81.68 1514 reject_low 303 ALIGNMENT 62 Y12-17h04.p1k chr06 139 33 892 998 C 107 86.92 1514 reject_low 289 ALIGNMENT 0 Y12-17h04.p1k chr15 460 797 1089506 1089505 F 338 0.00 1514 reject_low 224 ALIGNMENT 0 Y12-17h04.p1k chr12 797 283 1684 1683 C 515 0.00 1514 reject_low 147 ALIGNMENT 0 Y12-17h04.p1k chr14 797 355 1575 1574 C 443 0.00 1514 reject_low 69 ALIGNMENT 0 Y12-17h04.p1k chr16 62 253 945962 945961 F 192 0.00 1514 reject_low 241 ALIGNMENT 0 Y12-17h04.p1k chr08 797 427 1652 1651 C 371 0.00 1514 reject_low 233 ALIGNMENT 0 Y12-17h04.p1k chr05 797 452 1806 1805 C 346 0.00 1514 reject_low 276 ALIGNMENT 101 Y12-17h04.p1k chr13 459 207 1814 2066 C 253 82.21 1514 reject_low 213 ALIGNMENT 0 Y12-17h04.p1k chr06 797 427 894 893 C 371 0.00 1514 reject_low 225 ALIGNMENT 211 Y12-17h04.p1k chr12 33 426 1076296 1076689 F 394 86.04 1514 reject_low 105 ALIGNMENT 34 Y12-17h04.p1k chr13 91 23 1678 1746 C 69 84.06 1514 reject_low 335 ALIGNMENT 30 Y12-17h04.p1k chr05 463 310 1901 2054 C 154 75.32 1514 reject_low 390 ALIGNMENT 57 Y12-17h04.p1k chr16 33 127 946389 946483 F 95 87.37 1514 reject_low 300 ALIGNMENT 0 Y12-17h04.p1k chr04 391 797 1530488 1530487 F 407 0.00 1514 reject_low 83 ALIGNMENT 101 Y12-17h04.p1k chr16 459 207 1630 1882 C 253 82.21 1514 reject_low 215 ALIGNMENT 136 Y12-17h04.p1k chr06 175 17 892 1051 C 159 96.23 1514 reject_low 121 ALIGNMENT 53 Y12-17h04.p1k chr04 37 127 1530387 1530477 F 91 86.81 1514 reject_low 314 ALIGNMENT 102 Y12-17h04.p1k chr05 218 462 574893 575137 F 245 82.86 1514 reject_low 201 ALIGNMENT 716 Y12-17h04.q1k chr12 780 28 1073157 1073909 C 753 98.67 1446 accept_tel 0 ALIGNMENT 0 Y12-17h04.p1k chr04 62 145 1530064 1530063 F 84 0.00 1514 reject_low 182 ALIGNMENT 0 Y12-17h04.p1k chr16 797 247 1484 1483 C 551 0.00 1514 reject_low 174 ALIGNMENT 0 Y12-17h04.p1k chr14 797 319 1575 1574 C 479 0.00 1514 reject_low 153 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 1778 1777 C 335 0.00 1514 reject_low 87 ALIGNMENT 0 Y12-17h04.p1k chr16 347 62 1886 1885 C 286 0.00 1514 reject_low 310 ALIGNMENT 56 Y12-17h04.p1k chr08 462 284 1759 1937 C 179 79.33 1514 reject_low 312 ALIGNMENT 41 Y12-17h04.p1k chr10 91 37 1680 1734 C 55 92.73 1514 reject_low 352 ALIGNMENT 241 Y12-17h04.p1k chr05 426 17 1470 1880 C 410 87.80 1514 reject_low 46 ALIGNMENT 90 Y12-17h04.p1k chr05 254 451 574893 575090 F 198 83.84 1514 reject_low 235 ALIGNMENT 0 Y12-17h04.p1k chr09 797 427 1687 1686 C 371 0.00 1514 reject_low 37 ALIGNMENT 71 Y12-17h04.q1k chr12 892 798 1073015 1073108 C 95 92.63 1446 accept_tel 0 ALIGNMENT 0 Y12-17h04.p1k chr07 460 797 1089247 1089246 F 338 0.00 1514 reject_low 211 ALIGNMENT 0 Y12-17h04.p1k chr14 797 391 1575 1574 C 407 0.00 1514 reject_low 80 ALIGNMENT 38 Y12-17h04.p1k chr05 91 37 1481 1535 C 55 90.91 1514 reject_low 360 ALIGNMENT 313 Y12-17h04.p1k chr09 426 33 1686 2079 C 394 94.67 1514 reject_low 37 ALIGNMENT 0 Y12-17h04.p1k chr02 223 62 2085 2084 C 162 0.00 1514 reject_low 229 ALIGNMENT 0 Y12-17h04.p1k chr08 463 797 560589 560588 F 335 0.00 1514 reject_low 292 ALIGNMENT 0 Y12-17h04.p1k chr16 464 797 946027 946026 F 334 0.00 1514 reject_low 383 ALIGNMENT 0 Y12-17h04.p1k chr08 383 62 1910 1909 C 322 0.00 1514 reject_low 358 ALIGNMENT 0 Y12-17h04.p1k chr02 797 247 1487 1486 C 551 0.00 1514 reject_low 261 ALIGNMENT 34 Y12-17h04.p1k chr06 463 274 1072 1261 C 190 74.74 1514 reject_low 386 ALIGNMENT 0 Y12-17h04.p1k chr08 797 67 1652 1651 C 731 0.00 1514 reject_low 355 ALIGNMENT 863 Y12-17h04.p1k chr15 38 1298 1089229 1090482 F 1261 90.17 1514 reject_low 22 ALIGNMENT 0 Y12-17h04.p1k chr08 62 347 560439 560438 F 286 0.00 1514 reject_low 326 ALIGNMENT 0 Y12-17h04.p1k chr08 463 797 560769 560768 F 335 0.00 1514 reject_low 115 ALIGNMENT 74 Y12-17h04.q1k chr09 798 892 5544 5637 F 95 93.68 1446 reject_low 1 ALIGNMENT 0 Y12-17h04.p1k chr08 797 463 1688 1687 C 335 0.00 1514 reject_low 226 ALIGNMENT 0 Y12-17h04.p1k chr15 92 797 1089642 1089641 F 706 0.00 1514 reject_low 337 ALIGNMENT 0 Y12-17h04.p1k chr08 140 62 1901 1900 C 79 0.00 1514 reject_low 164 ALIGNMENT 0 Y12-17h04.p1k chr08 452 797 560470 560469 F 346 0.00 1514 reject_low 387 ALIGNMENT 0 Y12-17h04.p1k chr15 62 206 1089254 1089253 F 145 0.00 1514 reject_low 224 ALIGNMENT 0 Y12-17h04.p1k chr07 283 797 1089394 1089393 F 515 0.00 1514 reject_low 190 ALIGNMENT 0 Y12-17h04.p1k chr04 463 797 1530416 1530415 F 335 0.00 1514 reject_low 128 ALIGNMENT 0 Y12-17h04.p1k chr16 463 797 946098 946097 F 335 0.00 1514 reject_low 311 ALIGNMENT 0 Y12-17h04.p1k chr04 464 797 1530129 1530128 F 334 0.00 1514 reject_low 374 ALIGNMENT 216 Y12-17h04.p1k chr14 354 17 1574 1912 C 338 89.35 1514 reject_low 69 ALIGNMENT 101 Y12-17h04.p1k chr07 207 459 1088995 1089247 F 253 82.21 1514 reject_low 211 ALIGNMENT 96 Y12-17h04.p1k chr02 215 23 1481 1673 C 193 83.94 1514 reject_low 198 ALIGNMENT 874 Y12-17h04.p1k chr16 1322 38 630 1907 C 1285 89.96 1514 reject_low 17 ALIGNMENT 70 Y12-17h04.p1k chr14 163 37 1585 1711 C 127 85.83 1514 reject_low 271 ALIGNMENT 0 Y12-17h04.p1k chr14 797 247 1575 1574 C 551 0.00 1514 reject_low 172 ALIGNMENT 132 Y12-17h04.p1k chr08 146 459 560417 560730 F 314 82.48 1514 reject_low 160 ALIGNMENT 0 Y12-17h04.p1k chr09 797 92 1698 1697 C 706 0.00 1514 reject_low 351 ALIGNMENT 0 Y12-17h04.p1k chr02 797 391 1487 1486 C 407 0.00 1514 reject_low 133 ALIGNMENT 170 Y12-17h04.p1k chr04 110 462 1530064 1530416 F 353 84.42 1514 reject_low 128 ALIGNMENT 0 Y12-17h04.p1k chr12 463 797 1076617 1076616 F 335 0.00 1514 reject_low 400 ALIGNMENT 0 Y12-17h04.p1k chr12 797 427 1684 1683 C 371 0.00 1514 reject_low 109 ALIGNMENT 0 Y12-17h04.p1k chr06 797 452 1049 1048 C 346 0.00 1514 reject_low 340 ALIGNMENT 70 Y12-17h04.p1k chr15 37 163 1089516 1089642 F 127 85.83 1514 reject_low 272 ALIGNMENT 0 Y12-17h04.p1k chr09 347 168 2233 2244 C 180 0.00 1514 reject_low 422 ALIGNMENT 0 Y12-17h04.p1k chr08 216 62 1933 1932 C 155 0.00 1514 reject_low 226 ALIGNMENT 0 Y12-17h04.p1k chr13 397 62 2092 2091 C 336 0.00 1514 reject_low 379 ALIGNMENT 100 Y12-17h04.p1k chr09 462 220 2046 2288 C 243 82.72 1514 reject_low 217 ALIGNMENT 0 Y12-17h04.p1k chr07 92 797 1089383 1089382 F 706 0.00 1514 reject_low 332 ALIGNMENT 0 Y12-17h04.p1k chr15 319 797 1089653 1089652 F 479 0.00 1514 reject_low 154 ALIGNMENT 0 Y12-17h04.p1k chr13 217 62 2092 2091 C 156 0.00 1514 reject_low 204 ALIGNMENT 150 Y12-17h04.p1k chr02 459 82 1705 2082 C 378 81.48 1514 reject_low 141 ALIGNMENT 0 Y12-17h04.p1k chr12 92 797 1076678 1076677 F 706 0.00 1514 reject_low 334 ALIGNMENT 0 Y12-17h04.p1k chr16 797 460 1595 1594 C 338 0.00 1514 reject_low 181 ALIGNMENT 0 Y12-17h04.p1k chr02 797 460 1706 1705 C 338 0.00 1514 reject_low 141 ALIGNMENT 0 Y12-17h04.p1k chr09 797 463 2119 2118 C 335 0.00 1514 reject_low 422 ALIGNMENT 251 Y12-17h04.p1k chr16 33 462 945993 946422 F 430 87.67 1514 reject_low 47 ALIGNMENT 0 Y12-17h04.p1k chr14 797 67 1575 1574 C 731 0.00 1514 reject_low 370 ALIGNMENT 0 Y12-17h04.p1k chr16 797 463 1556 1555 C 335 0.00 1514 reject_low 127 ALIGNMENT 0 Y12-17h04.p1k chr05 797 283 1471 1470 C 515 0.00 1514 reject_low 162 ALIGNMENT 62 Y12-17h04.q1k chr14 798 892 5155 5248 F 95 89.47 1446 reject_low 7 ALIGNMENT 216 Y12-17h04.p1k chr07 17 354 1089056 1089394 F 338 89.35 1514 reject_low 67 ALIGNMENT 0 Y12-17h04.q1k chr12 781 797 4157 4204 F 17 0.00 1446 reject_low 11 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 1958 1957 C 335 0.00 1514 reject_low 417 ALIGNMENT 65 Y12-17h04.q1k chr13 798 892 4081 4174 F 95 90.53 1446 reject_low 33 ALIGNMENT 55 Y12-17h04.p1k chr14 462 348 1862 1976 C 115 85.22 1514 reject_low 309 ALIGNMENT 0 Y12-17h04.p1k chr12 154 155 2207 7345 C 0 0.00 1514 reject_low 405 ALIGNMENT 0 Y12-17h04.q1k chr12 255 200 1067098 1067093 C 56 0.00 1446 reject_low 10 ALIGNMENT 103 Y12-17h04.p1k chr12 17 246 1069796 1070026 F 230 82.61 1514 reject_low 402 ALIGNMENT 742 Y12-17h04.q1k chr09 28 780 4742 5495 F 753 99.87 1446 reject_low 1 ALIGNMENT 23 Y12-17h04.p1k chr09 131 78 2245 2298 C 54 81.48 1514|9,0 reject_low 398,416,418,420,422,424,426 ALIGNMENT 0 Y12-17h04.p1k chr10 797 452 1933 1932 C 346 0.00 1514 reject_low 419 ALIGNMENT 0 Y12-17h04.p1k chr12 797 460 7438 7437 C 338 0.00 1514 reject_low 178 ALIGNMENT 93 Y12-17h04.p1k chr09 246 37 1686 1895 C 210 82.38 1514 reject_low 231 ALIGNMENT 0 Y12-17h04.p1k chr08 797 128 1663 1662 C 670 0.00 1514 reject_low 298 ALIGNMENT 248 Y12-17h04.p1k chr12 462 33 1755 2184 C 430 87.44 1514 reject_low 48 ALIGNMENT 168 Y12-17h04.p1k chr05 354 17 1470 1808 C 338 84.62 1514 reject_low 117 ALIGNMENT 157 Y12-17h04.p1k chr08 37 318 560560 560841 F 282 86.52 1514 reject_low 136 ALIGNMENT 0 Y12-17h04.p1k chr16 797 355 1484 1483 C 443 0.00 1514 reject_low 70 ALIGNMENT 25 Y12-17h04.p1k chr15 23 66 1089610 1089653 F 44 86.36 1514 reject_low 371 ALIGNMENT 0 Y12-17h04.p1k chr04 427 797 1530488 1530487 F 371 0.00 1514 reject_low 103 ALIGNMENT 0 Y12-17h04.p1k chr16 460 797 946239 946238 F 338 0.00 1514 reject_low 216 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 2066 2065 C 335 0.00 1514 reject_low 275 ALIGNMENT 140 Y12-17h04.q1k chr13 635 780 3887 4032 F 146 99.32 1446 reject_low 33 ALIGNMENT 34 Y12-17h04.p1k chr12 23 91 1076610 1076678 F 69 84.06 1514 reject_low 334 ALIGNMENT 56 Y12-17h04.p1k chr10 163 33 1680 1810 C 131 81.68 1514 reject_low 304 ALIGNMENT 169 Y12-17h04.p1k chr02 451 44 1677 2084 C 408 82.11 1514 reject_low 131 ALIGNMENT 0 Y12-17h04.p1k chr14 797 464 1934 1933 C 334 0.00 1514 reject_low 380 ALIGNMENT 0 Y12-17h04.p1k chr13 797 92 1679 1678 C 706 0.00 1514 reject_low 335 ALIGNMENT 0 Y12-17h04.p1k chr16 797 92 1495 1494 C 706 0.00 1514 reject_low 338 ALIGNMENT 0 Y12-17h04.p1k chr10 797 216 1665 1664 C 582 0.00 1514 reject_low 263 ALIGNMENT 0 Y12-17h04.p1k chr02 797 319 1487 1486 C 479 0.00 1514 reject_low 142 ALIGNMENT 0 Y12-17h04.p1k chr06 797 452 941 940 C 346 0.00 1514 reject_low 209 ALIGNMENT 0 Y12-17h04.p1k chr16 797 391 1484 1483 C 407 0.00 1514 reject_low 81 ALIGNMENT 0 Y12-17h04.p1k chr09 383 168 2233 2244 C 216 0.00 1514 reject_low 424 ALIGNMENT 47 Y12-17h04.p1k chr06 103 17 892 979 C 87 86.21 1514 reject_low 277 ALIGNMENT 0 Y12-17h04.p1k chr02 797 164 1498 1497 C 634 0.00 1514 reject_low 264 ALIGNMENT 28 Y12-17h04.p1k chr16 23 66 946451 946494 F 44 88.64 1514 reject_low 357 ALIGNMENT 90 Y12-17h04.p1k chr14 451 254 1801 1998 C 198 83.84 1514 reject_low 239 ALIGNMENT 0 Y12-17h04.p1k chr14 797 452 1910 1909 C 346 0.00 1514 reject_low 347 ALIGNMENT 62 Y12-17h04.q1k chr07 892 798 1085720 1085813 C 95 89.47 1446 reject_low 6 ALIGNMENT 0 Y12-17h04.p1k chr09 797 164 1698 1697 C 634 0.00 1514 reject_low 303 ALIGNMENT 117 Y12-17h04.p1k chr15 146 459 1089229 1089542 F 314 80.89 1514 reject_low 184 ALIGNMENT 144 Y12-17h04.p1k chr12 282 37 1683 1928 C 246 87.40 1514 reject_low 147 ALIGNMENT 109 Y12-17h04.p1k chr10 451 216 2004 2239 C 236 84.32 1514 reject_low 421 ALIGNMENT 52 Y12-17h04.p1k chr12 348 462 1069624 1069738 F 115 84.35 1514 reject_low 324 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 1756 1755 C 335 0.00 1514 reject_low 48 ALIGNMENT 21 Y12-17h04.p1k chr06 95 37 1128 1186 C 59 79.66 1514 reject_low 413 ALIGNMENT 43 Y12-17h04.p1k chr08 451 348 1806 1909 C 104 82.69 1514 reject_low 353 ALIGNMENT 85 Y12-17h04.p1k chr05 215 37 1465 1643 C 179 83.24 1514 reject_low 243 ALIGNMENT 0 Y12-17h04.p1k chr12 427 797 1070026 1070025 F 371 0.00 1514 reject_low 104 ALIGNMENT 143 Y12-17h04.p1k chr05 33 318 575032 575317 F 286 84.62 1514 reject_low 149 ALIGNMENT 0 Y12-17h04.q1k chr04 797 781 1526908 1526955 C 17 0.00 1446 reject_low 3 ALIGNMENT 0 Y12-17h04.p1k chr12 797 463 1828 1827 C 335 0.00 1514 reject_low 396 ALIGNMENT 65 Y12-17h04.q1k chr12 798 892 4205 4298 F 95 90.53 1446 reject_low 11 ALIGNMENT 65 Y12-17h04.q1k chr08 892 798 558332 558425 C 95 90.53 1446 reject_low 35 ALIGNMENT 101 Y12-17h04.p1k chr14 459 207 1721 1973 C 253 82.21 1514 reject_low 214 ALIGNMENT 0 Y12-17h04.p1k chr06 797 319 894 893 C 479 0.00 1514 reject_low 413 ALIGNMENT 0 Y12-17h04.p1k chr12 797 452 7554 7553 C 346 0.00 1514 reject_low 237 ALIGNMENT 0 Y12-17h04.p1k chr12 797 464 7578 7577 C 334 0.00 1514 reject_low 284 ALIGNMENT 723 Y12-17h04.p1k chr06 1292 90 70 1265 C 1203 87.45 1514 reject_low 28 ALIGNMENT 79 Y12-17h04.p1k chr16 215 37 1478 1656 C 179 82.12 1514 reject_low 256 ALIGNMENT 143 Y12-17h04.p1k chr12 33 318 1076404 1076689 F 286 84.62 1514 reject_low 151 ALIGNMENT 867 Y12-17h04.p1k chr09 1235 33 919 2115 C 1203 91.35 1514 reject_low 23 ALIGNMENT 245 Y12-17h04.p1k chr10 390 37 1669 2022 C 354 91.24 1514 reject_low 54 ALIGNMENT 29 Y12-17h04.p1k chr09 66 37 1686 1715 C 30 100.00 1514 reject_low 388 ALIGNMENT 846 Y12-17h04.p1k chr12 38 1231 1076265 1077452 F 1194 90.95 1514 reject_low 26 ALIGNMENT 0 Y12-17h04.p1k chr12 62 109 1069602 1069601 F 48 0.00 1514 reject_low 129 ALIGNMENT 100 Y12-17h04.p1k chr12 17 282 1069760 1070026 F 266 80.45 1514 reject_low 412 ALIGNMENT 103 Y12-17h04.p1k chr12 17 246 1076459 1076689 F 230 82.61 1514 reject_low 170 ALIGNMENT 220 Y12-17h04.p1k chr09 462 105 1866 2223 C 358 88.83 1514 reject_low 92 ALIGNMENT 100 Y12-17h04.p1k chr05 17 282 575051 575317 F 266 80.45 1514 reject_low 189 ALIGNMENT 0 Y12-17h04.p1k chr06 161 62 1266 1265 C 100 0.00 1514 reject_low 278 ALIGNMENT 0 Y12-17h04.p1k chr14 397 62 1999 1998 C 336 0.00 1514 reject_low 380 ALIGNMENT 0 Y12-17h04.p1k chr12 797 128 1695 1694 C 670 0.00 1514 reject_low 299 ALIGNMENT 0 Y12-17h04.p1k chr13 109 62 2092 2091 C 48 0.00 1514 reject_low 125 ALIGNMENT 0 Y12-17h04.p1k chr13 797 463 1848 1847 C 335 0.00 1514 reject_low 204 ALIGNMENT 716 Y12-17h04.q1k chr04 780 28 1526956 1527708 C 753 98.67 1446 reject_low 3 ALIGNMENT 0 Y12-17h04.p1k chr13 797 463 1740 1739 C 335 0.00 1514 reject_low 125 ALIGNMENT 0 Y12-17h04.p1k chr10 125 126 2270 2233 C 0 0.00 1514 reject_low 417,419,421,423,425,427 ALIGNMENT 0 Y12-17h04.p1k chr12 247 797 1076689 1076688 F 551 0.00 1514 reject_low 170 ALIGNMENT 28 Y12-17h04.p1k chr05 66 23 1470 1513 C 44 88.64 1514 reject_low 354 ALIGNMENT 0 Y12-17h04.p1k chr07 62 289 1088970 1088969 F 228 0.00 1514 reject_low 283 ALIGNMENT 0 Y12-17h04.p1k chr02 81 62 2083 2082 C 20 0.00 1514 reject_low 141 ALIGNMENT 0 Y12-17h04.p1k chr16 797 460 1631 1630 C 338 0.00 1514 reject_low 215 ALIGNMENT 38 Y12-17h04.p1k chr12 91 37 1694 1748 C 55 90.91 1514 reject_low 361 ALIGNMENT 0 Y12-17h04.q1k chr13 781 797 4033 4080 F 17 0.00 1446 reject_low 33 ALIGNMENT 238 Y12-17h04.p1k chr12 74 462 1069602 1069990 F 389 88.69 1514 reject_low 62 ALIGNMENT 76 Y12-17h04.p1k chr08 462 253 1723 1932 C 210 80.95 1514 reject_low 259 ALIGNMENT 0 Y12-17h04.p1k chr04 216 797 1530493 1530492 F 582 0.00 1514 reject_low 248 ALIGNMENT 0 Y12-17h04.p1k chr12 62 253 1069602 1069601 F 192 0.00 1514 reject_low 245 ALIGNMENT 0 Y12-17h04.q1k chr02 62 634 4212 4211 F 573 0.00 1446 reject_low 34 ALIGNMENT 0 Y12-17h04.p1k chr07 62 145 1088970 1088969 F 84 0.00 1514 reject_low 177 ALIGNMENT 0 Y12-17h04.p1k chr15 452 797 1089426 1089425 F 346 0.00 1514 reject_low 246 ALIGNMENT 0 Y12-17h04.p1k chr09 206 168 2230 2244 C 39 0.00 1514 reject_low 416 ALIGNMENT 79 Y12-17h04.p1k chr12 215 37 7321 7499 C 179 82.12 1514|4,0 reject_low 407,408 ALIGNMENT 0 Y12-17h04.p1k chr12 797 464 2043 2042 C 334 0.00 1514 reject_low 409 ALIGNMENT 0 Y12-17h04.p1k chr10 797 463 2102 2101 C 335 0.00 1514 reject_low 423 ALIGNMENT 0 Y12-17h04.p1k chr13 797 164 1679 1678 C 634 0.00 1514 reject_low 270 ALIGNMENT 0 Y12-17h04.p1k chr15 391 797 1089653 1089652 F 407 0.00 1514 reject_low 85 ALIGNMENT 99 Y12-17h07.p1k vc_5 246 1 4434 4669 C 246 82.93 763 reject_vc 1 ALIGNMENT 299 Y12-17h07.q1k chr15 330 7 787730 788051 C 324 98.46 331 accept 0 ALIGNMENT 99 Y12-17h07.p1k vc_7 1 246 456 691 F 246 82.93 763 reject_vc 2 ALIGNMENT 776 Y12-17h08.q1k chr15 851 18 514862 515694 C 834 98.68 1389 accept 0 ALIGNMENT 876 Y12-17h08.p1k chr15 1 1056 511619 512665 F 1056 95.45 1381 accept 0 ALIGNMENT 615 Y12-17h09.p1k chr12 721 9 873575 874282 C 713 96.49 1199 accept 0 ALIGNMENT 739 Y12-17h09.q1k chr12 11 915 869104 869991 F 905 96.91 1333 accept 0 ALIGNMENT 661 Y12-17h10.q1k chr02 10 790 552269 553039 F 781 97.31 1441 accept 0 ALIGNMENT 674 Y12-17h10.p1k chr02 796 2 555498 556279 C 795 96.86 1325 accept 0 ALIGNMENT 101 Y12-17h12.p1k chr10 681 994 25609 25920 F 314 77.07 1302 reject_low 8 ALIGNMENT 0 Y12-17h12.p1k chr07 528 421 1077247 1077354 C 108 0.00 1302 reject_low 5 ALIGNMENT 0 Y12-17h12.p1k chr02 349 62 806166 806165 C 288 0.00 1302 reject_low 4 ALIGNMENT 21 Y12-17h12.p1k chr10 109 153 25037 25081 F 45 82.22 1302 reject_low 8 ALIGNMENT 672 Y12-17h12.p1k chr07 40 1143 1067864 1068970 F 1104 87.68 1302 reject_low 3 ALIGNMENT 967 Y12-17h12.p1k chr15 14 1150 23133 24274 F 1137 95.60 1302 reject_low 2 ALIGNMENT 206 Y12-17h12.p1k chr02 992 529 805525 805986 C 464 81.90 1302 reject_low 4 ALIGNMENT 0 Y12-17h12.q1k chr09 648 93 23310 23309 C 556 0.00 1419 reject_low 7 ALIGNMENT 25 Y12-17h12.p1k chr02 420 350 806095 806165 C 71 80.28 1302 reject_low 4 ALIGNMENT 206 Y12-17h12.p1k chr07 992 529 1076785 1077246 C 464 81.90 1302 reject_low 5 ALIGNMENT 25 Y12-17h12.p1k chr07 420 350 1077355 1077425 C 71 80.28 1302 reject_low 5 ALIGNMENT 1018 Y12-17h12.p1k chr10 14 1150 17376 18517 F 1137 97.10 1302 reject_low 1 ALIGNMENT 0 Y12-17h12.p1k chr10 544 680 25472 25608 F 137 0.00 1302 reject_low 8 ALIGNMENT 0 Y12-17h12.p1k chr10 154 399 25082 25327 F 246 0.00 1302 reject_low 8 ALIGNMENT 0 Y12-17h12.q1k chr09 648 174 23718 23717 C 475 0.00 1419 reject_low 6 ALIGNMENT 24 Y12-17h12.p1k chr10 400 429 25328 25357 F 30 93.33 1302 reject_low 8 ALIGNMENT 0 Y12-17h12.p1k chr02 528 421 805987 806094 C 108 0.00 1302 reject_low 4 ALIGNMENT 39 Y12-17h12.q1k chr09 92 31 23309 23370 C 62 88.71 1419 reject_low 7 ALIGNMENT 26 Y12-17h12.q1k chr09 173 137 23717 23753 C 37 91.89 1419 reject_low 6 ALIGNMENT 0 Y12-17h12.p1k chr10 62 108 25037 25036 F 47 0.00 1302 reject_low 8 ALIGNMENT 0 Y12-17h12.p1k chr07 349 62 1077426 1077425 C 288 0.00 1302 reject_low 5 ALIGNMENT 0 Y12-17h12.q1k chr09 136 62 23754 23753 C 75 0.00 1419 reject_low 6 ALIGNMENT 0 Y12-17h12.p1k chr10 430 483 25358 25411 F 54 0.00 1302 reject_low 8 ALIGNMENT 21 Y12-17h12.p1k chr10 484 543 25412 25471 F 60 78.33 1302 reject_low 8 ALIGNMENT 1018 Y12-17h12.p1k chr09 14 1150 17393 18534 F 1137 97.10 1302 accept_tel 0 ALIGNMENT 0 Y12-17h12.q1k chr09 648 76 23645 23644 C 573 0.00 1419 accept_tel 0 ALIGNMENT 55 Y12-17h12.q1k chr09 75 11 23644 23708 C 65 95.38 1419 accept_tel 0 ALIGNMENT 841 Y12-17h13.q1k chr15 1017 6 65278 66285 C 1012 95.75 1347 accept 0 ALIGNMENT 698 Y12-17h13.p1k chr15 33 858 61646 62461 F 826 96.25 1393 accept 0 ALIGNMENT 637 Y12-17h14.p1k chr13 28 761 511878 512610 F 734 96.73 1397 accept 0 ALIGNMENT 660 Y12-17h14.q1k chr13 772 11 515775 516531 C 762 97.24 1343 accept 0 ALIGNMENT 927 Y12-17h15.q1k chr14 25 1138 44506 45606 F 1114 95.96 1292 accept 0 ALIGNMENT 984 Y12-17h15.p1k chr14 1205 13 49976 51166 C 1193 96.06 1285 accept 0 ALIGNMENT 882 Y12-17h16.q1k chr05 1105 32 372180 373247 C 1074 96.28 1275 accept 0 ALIGNMENT 961 Y12-17h16.p1k chr05 12 1199 368376 369549 F 1188 95.54 1286 accept 0 ALIGNMENT 791 Y12-17h17.p1k chr05 988 5 303459 304427 C 984 95.02 1249 accept 0 ALIGNMENT 819 Y12-17h17.q1k chr05 18 880 300664 301523 F 863 98.84 1378 accept 0 ALIGNMENT 0 Y12-17h17.q1k chr09 724 526 238483 238482 C 199 0.00 1378 reject_low 1 ALIGNMENT 218 Y12-17h17.q1k chr09 525 16 238482 238991 C 510 81.37 1378 reject_low 1 ALIGNMENT 808 Y12-17h18.q1k chr02 920 9 766151 767052 C 912 97.70 1357 accept 0 ALIGNMENT 1024 Y12-17h18.p1k chr02 16 1280 763178 764432 F 1265 94.78 1280 accept 0 ALIGNMENT 1006 Y12-17h20.p1k chr04 13 1146 1112001 1113138 F 1134 97.44 1299 accept 0 ALIGNMENT 664 Y12-17h20.q1k chr04 765 53 1116288 1116999 C 713 98.60 1387 accept 0 ALIGNMENT 770 Y12-17h21.q1k chr02 1 912 234653 235554 F 912 96.93 1184 accept 0 ALIGNMENT 914 Y12-17h21.p1k chr02 1095 14 238958 240025 C 1082 96.40 1212 accept 0 ALIGNMENT 848 Y12-17h22.p1k chr15 978 11 84491 85452 C 968 97.31 1221 accept 0 ALIGNMENT 21 Y12-17h22.q1k chr02 147 120 650243 650270 C 28 100.00 1340 reject_low 2 ALIGNMENT 0 Y12-17h22.q1k chr02 92 119 353620 353619 F 28 0.00 1340 reject_low 1 ALIGNMENT 27 Y12-17h22.q1k chr02 120 160 353620 353660 F 41 97.56 1340 reject_low 1 ALIGNMENT 0 Y12-17h22.q1k chr02 161 335 353660 353659 F 175 0.00 1340 reject_low 1 ALIGNMENT 305 Y12-17h22.q1k chr15 61 499 81566 81999 F 439 91.80 1340 accept 0 ALIGNMENT 0 Y12-17h22.q1k chr02 335 148 650244 650243 C 188 0.00 1340 reject_low 2 ALIGNMENT 0 Y12-17h22.q1k chr02 119 92 650271 650270 C 28 0.00 1340 reject_low 2 ALIGNMENT 926 Y12-17h23.p1k chr04 1087 11 783102 784171 C 1077 96.75 1226 accept 0 ALIGNMENT 369 Y12-17h23.q1k chr04 1 418 778358 778776 F 418 97.85 1192 accept 0 ALIGNMENT 846 Y12-17h24.q1k chrm 1010 33 15873 16842 C 978 98.16 1215 accept 0 ALIGNMENT 834 Y12-17h24.p1k chrm 3 1097 13678 14776 F 1095 95.98 1180 accept 0 ALIGNMENT 994 Y12-17i01.p1k chr02 1248 17 54797 56044 C 1232 95.05 1297 accept_chi 0 ALIGNMENT 916 Y12-17i01.q1k chr11 1093 28 459868 460927 C 1066 96.72 1376 accept_chi 1 ALIGNMENT 851 Y12-17i02.p1k chr02 5 1059 106373 107412 F 1055 95.45 1329 accept 0 ALIGNMENT 960 Y12-17i02.q1k chr02 1168 28 110032 111182 C 1141 96.06 1323 accept 0 ALIGNMENT 566 Y12-17i03.p1k chr15 357 1092 183777 184528 F 736 94.16 1286 reject_bad_break 0 ALIGNMENT 206 Y12-17i03.p1k chr15 23 350 183080 183405 F 328 88.41 1286 reject_bad_break 0 ALIGNMENT 0 Y12-17i03.p1k chr15 351 356 183406 183776 F 6 0.00 1286 reject_bad_break 0 ALIGNMENT 952 Y12-17i03.q1k chr15 1177 29 185746 186906 C 1149 95.13 1341 reject_bad_break 0 ALIGNMENT 819 Y12-17i04.p1k chr13 984 1 793316 794301 C 984 95.12 1318 accept 0 ALIGNMENT 774 Y12-17i04.q1k chr13 10 863 790400 791251 F 854 97.89 1397 accept 0 ALIGNMENT 934 Y12-17i05.q1k chr07 18 1181 1046543 1047692 F 1164 95.45 1257 accept 0 ALIGNMENT 890 Y12-17i05.p1k chr07 1048 19 1049593 1050619 C 1030 96.60 1287 accept 0 ALIGNMENT 0 Y12-17i06.p1k chr14 799 457 561506 561505 C 343 0.00 1264 reject_low 12 ALIGNMENT 244 Y12-17i06.p1k chr16 469 200 850340 850609 C 270 98.52 1264 accept_trans 0 ALIGNMENT 77 Y12-17i06.p1k chr11 188 110 517630 517708 C 79 100.00 1264 reject_low 16 ALIGNMENT 33 Y12-17i06.p1k chr13 301 456 768547 768704 F 156 76.28 1264 reject_low 15 ALIGNMENT 32 Y12-17i06.p1k chr14 456 357 561505 561606 C 100 81.00 1264 reject_low 12 ALIGNMENT 0 Y12-17i06.p1k chr04 799 457 520344 520343 C 343 0.00 1264 reject_low 14 ALIGNMENT 0 Y12-17i06.p1k chr10 62 111 197228 197227 F 50 0.00 1264 reject_low 2 ALIGNMENT 0 Y12-17i06.p1k chr13 62 115 768368 768367 F 54 0.00 1264 reject_low 15 ALIGNMENT 70 Y12-17i06.p1k chr07 188 116 774354 774426 C 73 100.00 1264 reject_low 6 ALIGNMENT 75 Y12-17i06.p1k chr10 112 199 197228 197315 F 88 95.45 1264 reject_low 2 ALIGNMENT 0 Y12-17i06.p1k chr10 200 799 197315 197314 F 600 0.00 1264 reject_low 2 ALIGNMENT 30 Y12-17i06.p1k chr04 456 417 520343 520383 C 40 97.50 1264 reject_low 14 ALIGNMENT 70 Y12-17i06.p1k chr13 116 188 768368 768440 F 73 100.00 1264 reject_low 15 ALIGNMENT 70 Y12-17i06.p1k chr11 188 116 219541 219613 C 73 100.00 1264 reject_low 8 ALIGNMENT 0 Y12-17i06.p1k chr12 62 115 656936 656935 F 54 0.00 1264 reject_low 9 ALIGNMENT 0 Y12-17i06.p1k chr07 115 62 774427 774426 C 54 0.00 1264 reject_low 6 ALIGNMENT 0 Y12-17i06.p1k chr13 191 799 321220 321219 F 609 0.00 1264 reject_low 5 ALIGNMENT 32 Y12-17i06.p1k chr13 456 313 463297 463441 C 144 76.39 1264 reject_low 11 ALIGNMENT 0 Y12-17i06.p1k chr08 62 115 146235 146234 F 54 0.00 1264 reject_low 7 ALIGNMENT 0 Y12-17i06.p1k chr06 62 104 204901 204900 F 43 0.00 1264 reject_low 3 ALIGNMENT 0 Y12-17i06.p1k chr13 457 799 768704 768703 F 343 0.00 1264 reject_low 15 ALIGNMENT 0 Y12-17i06.p1k chr11 115 62 219614 219613 C 54 0.00 1264 reject_low 8 ALIGNMENT 0 Y12-17i06.p1k chr12 799 457 365988 365987 C 343 0.00 1264 reject_low 10 ALIGNMENT 0 Y12-17i06.p1k chr13 189 300 768441 768546 F 112 0.00 1264 reject_low 15 ALIGNMENT 459 Y12-17i06.p1k chr16 1110 473 843768 844402 C 638 93.10 1264 accept_trans 0 ALIGNMENT 0 Y12-17i06.p1k chr13 62 111 321142 321141 F 50 0.00 1264 reject_low 5 ALIGNMENT 43 Y12-17i06.p1k chr12 456 321 365987 366123 C 136 79.41 1264 reject_low 10 ALIGNMENT 0 Y12-17i06.p1k chr11 799 189 219542 219541 C 611 0.00 1264 reject_low 8 ALIGNMENT 0 Y12-17i06.p1k chr12 320 62 366124 366123 C 259 0.00 1264 reject_low 10 ALIGNMENT 76 Y12-17i06.p1k chr13 112 190 321142 321220 F 79 100.00 1264 reject_low 5 ALIGNMENT 0 Y12-17i06.p1k chr04 104 62 410460 410459 C 43 0.00 1264 reject_low 4 ALIGNMENT 70 Y12-17i06.p1k chr08 116 188 146235 146307 F 73 100.00 1264 reject_low 7 ALIGNMENT 28 Y12-17i06.p1k chr10 453 334 537829 537948 C 120 77.50 1264 reject_low 13 ALIGNMENT 72 Y12-17i06.p1k chr04 188 105 410376 410459 C 84 96.43 1264 reject_low 4 ALIGNMENT 0 Y12-17i06.p1k chr10 333 62 537949 537948 C 272 0.00 1264 reject_low 13 ALIGNMENT 0 Y12-17i06.p1k chr04 799 189 410377 410376 C 611 0.00 1264 reject_low 4 ALIGNMENT 0 Y12-17i06.p1k chr16 199 62 850610 850609 C 138 0.00 1264 accept_trans 0 ALIGNMENT 0 Y12-17i06.p1k chr11 109 62 517709 517708 C 48 0.00 1264 reject_low 16 ALIGNMENT 0 Y12-17i06.p1k chr04 416 62 520384 520383 C 355 0.00 1264 reject_low 14 ALIGNMENT 0 Y12-17i06.p1k chr13 312 62 463442 463441 C 251 0.00 1264 reject_low 11 ALIGNMENT 70 Y12-17i06.p1k chr12 116 188 656936 657008 F 73 100.00 1264 reject_low 9 ALIGNMENT 0 Y12-17i06.p1k chr16 799 205 856883 856882 C 595 0.00 1264 reject_low 1 ALIGNMENT 0 Y12-17i06.p1k chr10 799 454 537830 537829 C 346 0.00 1264 reject_low 13 ALIGNMENT 81 Y12-17i06.p1k chr06 105 191 204901 204987 F 87 98.85 1264 reject_low 3 ALIGNMENT 168 Y12-17i06.p1k chr16 204 23 856882 857062 C 182 98.90 1264 reject_low 1 ALIGNMENT 0 Y12-17i06.p1k chr14 356 62 561607 561606 C 295 0.00 1264 reject_low 12 ALIGNMENT 0 Y12-17i06.p1k chr16 472 470 844403 850339 C 3 0.00 1264 accept_trans 0 ALIGNMENT 0 Y12-17i06.p1k chr08 189 799 146307 146306 F 611 0.00 1264 reject_low 7 ALIGNMENT 0 Y12-17i06.p1k chr12 189 799 657008 657007 F 611 0.00 1264 reject_low 9 ALIGNMENT 0 Y12-17i06.p1k chr06 192 799 204987 204986 F 608 0.00 1264 reject_low 3 ALIGNMENT 0 Y12-17i06.p1k chr11 799 457 513349 513348 C 343 0.00 1264 reject_low 16 ALIGNMENT 0 Y12-17i06.p1k chr11 356 189 513447 517629 C 168 0.00 1264 reject_low 16 ALIGNMENT 35 Y12-17i06.p1k chr11 456 357 513348 513446 C 100 83.00 1264 reject_low 16 ALIGNMENT 0 Y12-17i06.p1k chr13 799 457 463298 463297 C 343 0.00 1264 reject_low 11 ALIGNMENT 0 Y12-17i06.p1k chr07 799 189 774355 774354 C 611 0.00 1264 reject_low 6 ALIGNMENT 817 Y12-17i07.p1k chr11 1024 20 361227 362235 C 1005 95.32 1244 accept 0 ALIGNMENT 879 Y12-17i07.q1k chr11 16 1048 356154 357187 F 1033 96.03 1343 accept 0 ALIGNMENT 967 Y12-17i10.p1k chr12 19 1207 867759 868966 F 1189 95.29 1319 accept 0 ALIGNMENT 944 Y12-17i10.q1k chr12 1124 30 872881 873989 C 1095 96.71 1268 accept 0 ALIGNMENT 695 Y12-17i11.p1k chr13 35 894 574118 574968 F 860 96.16 1380 accept 0 ALIGNMENT 775 Y12-17i11.q1k chr13 814 5 577868 578675 C 810 99.38 1254 accept 0 ALIGNMENT 902 Y12-17i12.q1k chr07 28 1155 860502 861612 F 1128 95.21 1339 accept 0 ALIGNMENT 735 Y12-17i12.p1k chr07 852 1 864281 865132 C 852 96.48 1253 accept 0 ALIGNMENT 830 Y12-17i13.p1k chr10 14 951 77751 78679 F 938 98.19 1275 accept 0 ALIGNMENT 529 Y12-17i13.q1k chr10 653 4 81490 82136 C 650 95.38 1356 accept 0 ALIGNMENT 0 Y12-17i14.q1k chr13 619 739 760765 760885 F 121 0.00 1272 reject_low 1 ALIGNMENT 30 Y12-17i14.q1k chr13 454 539 760600 760685 F 86 79.07 1272 reject_low 1 ALIGNMENT 38 Y12-17i14.q1k chr13 62 174 760208 760320 F 113 79.65 1272 reject_low 1 ALIGNMENT 0 Y12-17i14.q1k chr13 540 574 760686 760720 F 35 0.00 1272 reject_low 1 ALIGNMENT 33 Y12-17i14.q1k chr13 740 784 760886 760930 F 45 91.11 1272 reject_low 1 ALIGNMENT 20 Y12-17i14.q1k chr13 575 618 760721 760764 F 44 84.09 1272 reject_low 1 ALIGNMENT 928 Y12-17i14.q1k chr15 32 1123 909710 910795 F 1092 95.88 1272 accept 0 ALIGNMENT 910 Y12-17i14.p1k chr15 1089 21 912976 914031 C 1069 97.10 1266 accept 0 ALIGNMENT 0 Y12-17i14.q1k chr13 175 453 760321 760599 F 279 0.00 1272 reject_low 1 ALIGNMENT 716 Y12-17i16.q1k chr12 152 935 489754 490540 F 784 97.58 1262 reject_low 2 ALIGNMENT 907 Y12-17i16.q1k chr12 13 1026 460784 461798 F 1014 97.14 1262 accept 1 ALIGNMENT 671 Y12-17i16.p1k chr12 822 42 465242 466008 C 781 96.67 1417 accept 1 ALIGNMENT 907 Y12-17i16.q1k chr12 13 1026 451647 452661 F 1014 97.14 1262 accept 0 ALIGNMENT 671 Y12-17i16.p1k chr12 822 42 456105 456871 C 781 96.67 1417 accept 0 ALIGNMENT 0 Y12-17i16.q1k chr12 62 151 489754 489753 F 90 0.00 1262 reject_low 2 ALIGNMENT 937 Y12-17i17.q1k chr07 1 1122 237402 238533 F 1122 95.72 1185 accept 0 ALIGNMENT 726 Y12-17i17.p1k chr07 990 1 242252 243237 C 990 92.42 1143 accept 0 ALIGNMENT 0 Y12-17i18.p1k chr15 617 847 710109 710108 F 231 0.00 1224 reject_low 22 ALIGNMENT 0 Y12-17i18.p1k chr07 244 62 931544 931543 C 183 0.00 1224 reject_low 19 ALIGNMENT 556 Y12-17i18.p1k chr10 19 615 203092 203689 F 597 99.66 1224 reject_low 3 ALIGNMENT 0 Y12-17i18.p1k chr13 847 616 808537 808536 C 232 0.00 1224 reject_low 17 ALIGNMENT 544 Y12-17i18.p1k chr16 615 19 436887 437484 C 597 98.99 1224 reject_low 5 ALIGNMENT 0 Y12-17i18.p1k chr08 616 847 85905 85904 F 232 0.00 1224 reject_low 11 ALIGNMENT 0 Y12-17i18.p1k chr02 744 847 35770 35769 F 104 0.00 1224 reject_low 20 ALIGNMENT 149 Y12-17i18.p1k chr14 244 403 96450 96609 F 160 98.75 1224 reject_low 21 ALIGNMENT 0 Y12-17i18.p1k chr04 62 243 437145 437144 F 182 0.00 1224 reject_low 18 ALIGNMENT 812 Y12-17i18.q1k chr14 958 2 775548 776506 C 957 96.03 1276 ambiguous_tel 0 ALIGNMENT 311 Y12-17i18.p1k chr07 615 245 931174 931543 C 371 96.23 1224 reject_low 19 ALIGNMENT 0 Y12-17i18.p1k chr07 62 243 110858 110857 F 182 0.00 1224 reject_low 10 ALIGNMENT 0 Y12-17i18.p1k chr16 847 616 442740 442739 C 232 0.00 1224 reject_low 13 ALIGNMENT 0 Y12-17i18.p1k chr08 62 244 85535 85534 F 183 0.00 1224 reject_low 11 ALIGNMENT 0 Y12-17i18.p1k chr05 244 62 354727 354726 C 183 0.00 1224 reject_low 15 ALIGNMENT 335 Y12-17i18.p1k chr05 616 245 354355 354726 C 372 98.12 1224 reject_low 15 ALIGNMENT 341 Y12-17i18.p1k chr14 245 616 561608 561979 F 372 98.66 1224 reject_low 12 ALIGNMENT 354 Y12-17i18.p1k chr10 243 615 197462 197834 F 373 99.73 1224 reject_low 6 ALIGNMENT 789 Y12-17i18.q1k chr05 2 958 19380 20341 F 957 95.30 1276 ambiguous_tel 1 ALIGNMENT 0 Y12-17i18.p1k chr13 62 244 503770 503769 F 183 0.00 1224 reject_low 9 ALIGNMENT 0 Y12-17i18.p1k chr02 243 62 643855 643854 C 182 0.00 1224 reject_low 16 ALIGNMENT 0 Y12-17i18.p1k chr14 847 617 632121 632120 C 231 0.00 1224 reject_low 14 ALIGNMENT 0 Y12-17i18.p1k chr14 62 243 96450 96449 F 182 0.00 1224 reject_low 21 ALIGNMENT 0 Y12-17i18.p1k chr09 847 616 196651 196650 C 232 0.00 1224 reject_low 8 ALIGNMENT 0 Y12-17i18.p1k chr09 244 62 197021 197020 C 183 0.00 1224 reject_low 8 ALIGNMENT 352 Y12-17i18.p1k chr09 615 245 196650 197020 C 371 99.73 1224 reject_low 8 ALIGNMENT 0 Y12-17i18.p1k chr02 244 62 36219 36218 C 183 0.00 1224 reject_low 7 ALIGNMENT 0 Y12-17i18.p1k chr10 616 847 197834 197833 F 232 0.00 1224 reject_low 6 ALIGNMENT 352 Y12-17i18.p1k chr13 245 615 503770 504140 F 371 99.73 1224 reject_low 9 ALIGNMENT 0 Y12-17i18.p1k chr10 616 847 203689 203688 F 232 0.00 1224 reject_low 3 ALIGNMENT 0 Y12-17i18.p1k chr16 244 62 443110 443109 C 183 0.00 1224 reject_low 13 ALIGNMENT 315 Y12-17i18.p1k chr04 244 615 437145 437515 F 372 96.51 1224 reject_low 18 ALIGNMENT 268 Y12-17i18.p1k chr15 245 535 703773 704063 F 291 98.63 1224|0,2 reject_low 22 ALIGNMENT 544 Y12-17i18.p1k chr08 19 615 91160 91757 F 597 98.99 1224 reject_low 4 ALIGNMENT 401 Y12-17i18.p1k chr12 1201 615 733937 734530 C 587 91.65 1224 accept 2 ALIGNMENT 0 Y12-17i18.p1k chr07 847 616 931175 931174 C 232 0.00 1224 reject_low 19 ALIGNMENT 0 Y12-17i18.p1k chr15 534 533 704062 710027 F 0 0.00 1224 reject_low 22 ALIGNMENT 0 Y12-17i18.p1k chr02 847 617 35848 35847 C 231 0.00 1224 reject_low 7 ALIGNMENT 0 Y12-17i18.p1k chr14 62 244 561608 561607 F 183 0.00 1224 reject_low 12 ALIGNMENT 0 Y12-17i18.p1k chr14 244 62 632492 632491 C 183 0.00 1224 reject_low 14 ALIGNMENT 340 Y12-17i18.p1k chr16 615 245 442739 443109 C 371 98.65 1224 reject_low 13 ALIGNMENT 0 Y12-17i18.p1k chr04 616 847 437515 437514 F 232 0.00 1224 reject_low 18 ALIGNMENT 0 Y12-17i18.p1k chr05 847 617 354356 354355 C 231 0.00 1224 reject_low 15 ALIGNMENT 60 Y12-17i18.p1k chr15 531 616 710025 710109 F 86 94.19 1224|3,0 reject_low 22 ALIGNMENT 353 Y12-17i18.p1k chr02 616 245 35847 36218 C 372 99.73 1224 reject_low 7 ALIGNMENT 0 Y12-17i18.p1k chr14 617 847 561979 561978 F 231 0.00 1224 reject_low 12 ALIGNMENT 0 Y12-17i18.p1k chr13 616 847 504140 504139 F 232 0.00 1224 reject_low 9 ALIGNMENT 0 Y12-17i18.p1k chr07 616 847 111229 111228 F 232 0.00 1224 reject_low 10 ALIGNMENT 0 Y12-17i18.p1k chr12 614 62 734531 734530 C 553 0.00 1224 accept 2 ALIGNMENT 0 Y12-17i18.p1k chr10 62 242 197462 197461 F 181 0.00 1224 reject_low 6 ALIGNMENT 344 Y12-17i18.p1k chr07 244 615 110858 111229 F 372 98.92 1224 reject_low 10 ALIGNMENT 0 Y12-17i18.p1k chr16 847 616 436888 436887 C 232 0.00 1224 reject_low 5 ALIGNMENT 0 Y12-17i18.p1k chr02 847 616 643484 643483 C 232 0.00 1224 reject_low 16 ALIGNMENT 0 Y12-17i18.p1k chr02 62 702 35730 35729 F 641 0.00 1224 reject_low 20 ALIGNMENT 338 Y12-17i18.p1k chr14 616 245 632120 632491 C 372 98.39 1224 reject_low 14 ALIGNMENT 343 Y12-17i18.p1k chr08 245 615 85535 85905 F 371 98.92 1224 reject_low 11 ALIGNMENT 22 Y12-17i18.p1k chr02 703 743 35730 35770 F 41 85.37 1224 reject_low 20 ALIGNMENT 0 Y12-17i18.p1k chr13 243 62 808907 808906 C 182 0.00 1224 reject_low 17 ALIGNMENT 330 Y12-17i18.p1k chr13 615 244 808536 808906 C 372 97.85 1224 reject_low 17 ALIGNMENT 0 Y12-17i18.p1k chr15 62 244 703773 703772 F 183 0.00 1224 reject_low 22 ALIGNMENT 0 Y12-17i18.p1k chr08 616 847 91757 91756 F 232 0.00 1224 reject_low 4 ALIGNMENT 0 Y12-17i18.p1k chr14 404 847 96609 96608 F 444 0.00 1224 reject_low 21 ALIGNMENT 335 Y12-17i18.p1k chr02 615 244 643483 643854 C 372 98.12 1224 reject_low 16 ALIGNMENT 807 Y12-17i20.q1k chr12 1 927 458056 458971 F 927 97.41 1275 accept 0 ALIGNMENT 958 Y12-17i20.p1k chr12 1159 17 452472 453601 C 1143 95.63 1220 reject_low 1 ALIGNMENT 958 Y12-17i20.p1k chr12 1159 17 461609 462738 C 1143 95.63 1220 accept 0 ALIGNMENT 807 Y12-17i20.q1k chr12 1 927 467193 468108 F 927 97.41 1275 reject_low 2 ALIGNMENT 946 Y12-17i21.p1k chr12 24 1124 186335 187436 F 1101 96.28 1129 accept 0 ALIGNMENT 922 Y12-17i21.q1k chr12 1108 19 190635 191714 C 1090 96.42 1156 accept 0 ALIGNMENT 805 Y12-17i23.q1k chr04 935 4 509686 510616 C 932 97.53 1140 accept 0 ALIGNMENT 832 Y12-17i23.p1k chr04 18 989 505120 506089 F 972 96.91 1230 accept 0 ALIGNMENT 959 Y12-17i24.p1k chr15 1116 16 1046230 1047329 C 1101 96.91 1195 accept 0 ALIGNMENT 919 Y12-17i24.q1k chr15 12 1043 1043274 1044293 F 1032 97.29 1214 accept 0 ALIGNMENT 969 Y12-17j01.q1k chr15 30 1143 989348 990466 F 1114 96.50 1371 accept 0 ALIGNMENT 903 Y12-17j01.p1k chr15 1079 16 993352 994408 C 1064 96.33 1390 accept 0 ALIGNMENT 796 Y12-17j03.q1k chr07 28 1008 683694 684661 F 981 95.82 1404 accept_chi 1 ALIGNMENT 1054 Y12-17j03.p1k chr11 16 1221 393752 394963 F 1206 96.68 1359 accept_chi 0 ALIGNMENT 952 Y12-17j04.p1k chr05 16 1148 525686 526821 F 1133 95.76 1376 accept 0 ALIGNMENT 947 Y12-17j04.q1k chr05 1169 32 529475 530625 C 1138 95.87 1344 accept 0 ALIGNMENT 651 Y12-17j05.q1k chr12 799 28 467164 467930 C 772 96.11 1381 accept 1 ALIGNMENT 874 Y12-17j05.p1k chr12 1 1013 463027 464026 F 1013 96.74 1320 accept 1 ALIGNMENT 651 Y12-17j05.q1k chr12 799 28 458027 458793 C 772 96.11 1381 accept 0 ALIGNMENT 874 Y12-17j05.p1k chr12 1 1013 453890 454889 F 1013 96.74 1320 accept 0 ALIGNMENT 792 Y12-17j06.q1k chr04 24 982 849082 850035 F 959 95.72 1288 accept 0 ALIGNMENT 770 Y12-17j06.p1k chr04 1028 3 853610 854621 C 1026 94.25 1250 accept 0 ALIGNMENT 678 Y12-17j07.p1k chr16 894 33 664721 665566 C 862 95.01 1657 accept 0 ALIGNMENT 756 Y12-17j07.q1k chr16 18 895 659394 660266 F 878 96.47 1389 accept 0 ALIGNMENT 856 Y12-17j08.p1k chr14 1065 1 268939 269995 C 1065 95.02 1298 accept 0 ALIGNMENT 680 Y12-17j08.q1k chr14 14 743 265944 266678 F 730 98.49 1287 accept 0 ALIGNMENT 532 Y12-17j10.p1k chr16 44 814 512798 513556 F 771 93.39 1450 accept_chi 1 ALIGNMENT 744 Y12-17j10.q1k chr10 6 854 37931 38773 F 849 97.17 1281 accept_chi 0 ALIGNMENT 761 Y12-17j11.p1k chr15 871 3 762123 762989 C 869 96.66 1201 accept 0 ALIGNMENT 932 Y12-17j11.q1k chr15 29 1138 757952 759063 F 1110 95.59 1318 accept 0 ALIGNMENT 0 Y12-17j12.p1k chr15 177 176 216920 216951 F 0 0.00 1400 accept 0 ALIGNMENT 815 Y12-17j12.q1k chr15 1006 30 220931 221890 C 977 96.32 1401 accept 0 ALIGNMENT 167 Y12-17j12.p1k chr15 1 187 216742 216930 F 187 98.40 1400|0,11 accept 0 ALIGNMENT 437 Y12-17j12.p1k chr15 166 745 216941 217514 F 580 93.97 1400|11,0 accept 0 ALIGNMENT 963 Y12-17j13.q1k chr14 26 1192 383663 384838 F 1167 95.89 1233 accept 0 ALIGNMENT 918 Y12-17j13.p1k chr14 1209 11 389172 390393 C 1199 94.16 1227 accept 0 ALIGNMENT 734 Y12-17j14.q1k chr16 855 1 464824 465672 C 855 96.14 1206 accept_chi 1 ALIGNMENT 280 Y12-17j14.q1k chr11 515 23 283612 284104 C 493 85.80 1206 reject_low 2 ALIGNMENT 0 Y12-17j14.q1k chr11 550 516 283613 283612 C 35 0.00 1206 reject_low 2 ALIGNMENT 645 Y12-17j14.p1k chr11 786 2 513412 514185 C 785 95.67 1140 accept_chi 0 ALIGNMENT 675 Y12-17j15.p1k chr04 36 829 599536 600318 F 794 96.60 1478 accept 0 ALIGNMENT 743 Y12-17j15.q1k chr04 862 18 603266 604105 C 845 97.63 1324 accept 0 ALIGNMENT 46 Y12-17j16.p1k chr04 810 710 1530279 1530377 C 101 84.16 1330 reject_low 77 ALIGNMENT 36 Y12-17j16.p1k chr02 702 774 1769 1839 F 73 86.30 1330 reject_low 92 ALIGNMENT 28 Y12-17j16.p1k chr08 706 762 1866 1921 F 57 85.96 1330 reject_low 176 ALIGNMENT 57 Y12-17j16.p1k chr16 810 707 946321 946422 C 104 87.50 1330 reject_low 51 ALIGNMENT 69 Y12-17j16.p1k chr04 853 707 1530311 1530452 C 147 85.71 1330 reject_low 24 ALIGNMENT 623 Y12-17j16.q1k chr08 80 889 557371 558172 F 810 94.32 1190 reject_low 14 ALIGNMENT 612 Y12-17j16.q1k chr05 11 852 570658 571463 F 842 93.82 1190 reject_low 11 ALIGNMENT 0 Y12-17j16.p1k chr15 706 92 1089618 1089617 C 615 0.00 1330 reject_low 33 ALIGNMENT 32 Y12-17j16.p1k chr04 774 706 1530171 1530237 C 69 85.51 1330 reject_low 154 ALIGNMENT 0 Y12-17j16.p1k chr16 717 92 946052 946051 C 626 0.00 1330 reject_low 173 ALIGNMENT 61 Y12-17j16.p1k chr09 707 821 1974 2086 F 115 86.96 1330 reject_low 47 ALIGNMENT 33 Y12-17j16.p1k chr07 821 707 1089102 1089214 C 115 79.13 1330 reject_low 133 ALIGNMENT 0 Y12-17j16.p1k chr04 705 92 1530238 1530237 C 614 0.00 1330 reject_low 154 ALIGNMENT 69 Y12-17j16.p1k chr12 707 853 7362 7503 F 147 85.71 1330 reject_low 28 ALIGNMENT 35 Y12-17j16.p1k chr14 706 774 1825 1891 F 69 86.96 1330 reject_low 148 ALIGNMENT 50 Y12-17j16.p1k chr02 718 810 2217 2307 F 93 87.10 1330 reject_low 69 ALIGNMENT 44 Y12-17j16.p1k chr02 706 810 1953 2055 F 105 82.86 1330 reject_low 90 ALIGNMENT 685 Y12-17j16.p1k chr14 35 912 906 1773 F 878 93.96 1330 ambiguous_tel 5 ALIGNMENT 45 Y12-17j16.p1k chr02 707 810 2098 2199 F 104 83.65 1330 reject_low 89 ALIGNMENT 0 Y12-17j16.p1k chr09 92 717 2165 2164 F 626 0.00 1330 reject_low 164 ALIGNMENT 34 Y12-17j16.p1k chr12 707 821 7614 7726 F 115 79.13 1330 reject_low 121 ALIGNMENT 0 Y12-17j16.p1k chr16 92 717 1710 1709 F 626 0.00 1330 reject_low 102 ALIGNMENT 32 Y12-17j16.p1k chr12 774 706 1069709 1069775 C 69 85.51 1330 reject_low 155 ALIGNMENT 52 Y12-17j16.p1k chr15 821 707 1089469 1089581 C 115 84.35 1330 reject_low 62 ALIGNMENT 48 Y12-17j16.p1k chr05 707 810 1686 1787 F 104 84.62 1330 reject_low 74 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946387 946386 C 615 0.00 1330 reject_low 23 ALIGNMENT 34 Y12-17j16.p1k chr12 707 821 2079 2191 F 115 79.13 1330 reject_low 119 ALIGNMENT 43 Y12-17j16.p1k chr05 707 833 1650 1774 F 127 80.31 1330 reject_low 49 ALIGNMENT 54 Y12-17j16.p1k chr09 707 810 2046 2147 F 104 86.54 1330 reject_low 65 ALIGNMENT 34 Y12-17j16.q1k chr12 11 52 1065488 1065529 F 42 97.62 1190 reject_low 15 ALIGNMENT 0 Y12-17j16.p1k chr16 92 709 1594 1593 F 618 0.00 1330 reject_low 87 ALIGNMENT 28 Y12-17j16.p1k chr09 706 762 2189 2244 F 57 85.96 1330 reject_low 177 ALIGNMENT 34 Y12-17j16.p1k chr14 707 821 1862 1974 F 115 79.13 1330 reject_low 125 ALIGNMENT 0 Y12-17j16.p1k chr12 92 717 1874 1873 F 626 0.00 1330 reject_low 19 ALIGNMENT 0 Y12-17j16.p1k chr13 92 709 1778 1777 F 618 0.00 1330 reject_low 84 ALIGNMENT 691 Y12-17j16.p1k chr04 912 35 1530289 1531156 C 878 94.19 1330 ambiguous_tel 9 ALIGNMENT 0 Y12-17j16.p1k chr05 705 92 574959 574958 C 614 0.00 1330 reject_low 175 ALIGNMENT 24 Y12-17j16.p1k chr07 760 707 1089054 1089106 C 54 85.19 1330 reject_low 190 ALIGNMENT 38 Y12-17j16.p1k chr12 810 718 1069709 1069799 C 93 82.80 1330 reject_low 111 ALIGNMENT 35 Y12-17j16.p1k chr12 706 774 2042 2108 F 69 86.96 1330 reject_low 145 ALIGNMENT 37 Y12-17j16.p1k chr10 707 821 2101 2213 F 115 80.00 1330 reject_low 106 ALIGNMENT 0 Y12-17j16.p1k chr07 706 92 1089215 1089214 C 615 0.00 1330 reject_low 133 ALIGNMENT 0 Y12-17j16.p1k chr02 92 717 2073 2072 F 626 0.00 1330 reject_low 158 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1830 1829 F 615 0.00 1330 reject_low 104 ALIGNMENT 38 Y12-17j16.p1k chr04 810 718 1530171 1530261 C 93 82.80 1330 reject_low 110 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1069847 1069846 C 615 0.00 1330 reject_low 134 ALIGNMENT 69 Y12-17j16.p1k chr12 853 707 1069849 1069990 C 147 85.71 1330 reject_low 29 ALIGNMENT 0 Y12-17j16.p1k chr10 92 705 2172 2171 F 614 0.00 1330 reject_low 178 ALIGNMENT 0 Y12-17j16.p1k chr16 705 92 946136 946135 C 614 0.00 1330 reject_low 150 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 2118 2117 F 615 0.00 1330 reject_low 105 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 2079 2078 F 615 0.00 1330 reject_low 119 ALIGNMENT 625 Y12-17j16.q1k chr02 881 80 4667 5461 C 802 94.76 1190 reject_low 16 ALIGNMENT 38 Y12-17j16.p1k chr15 810 718 1089336 1089426 C 93 82.80 1330 reject_low 113 ALIGNMENT 69 Y12-17j16.p1k chr14 707 853 1610 1751 F 147 85.71 1330 reject_low 32 ALIGNMENT 0 Y12-17j16.p1k chr15 706 92 1089474 1089473 C 615 0.00 1330 reject_low 136 ALIGNMENT 46 Y12-17j16.p1k chr16 821 707 946346 946458 C 115 82.61 1330 reject_low 72 ALIGNMENT 0 Y12-17j16.p1k chr06 92 717 1048 1047 F 626 0.00 1330 reject_low 192 ALIGNMENT 45 Y12-17j16.p1k chr05 707 853 1506 1647 F 147 80.27 1330 reject_low 37 ALIGNMENT 40 Y12-17j16.p1k chr12 707 774 1791 1856 F 68 89.71 1330 reject_low 117 ALIGNMENT 0 Y12-17j16.p1k chr02 92 717 2145 2144 F 626 0.00 1330 reject_low 159 ALIGNMENT 28 Y12-17j16.p1k chr12 706 762 7685 7740 F 57 85.96 1330 reject_low 180 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 2170 2169 F 615 0.00 1330 reject_low 52 ALIGNMENT 0 Y12-17j16.p1k chr12 705 92 1069776 1069775 C 614 0.00 1330 reject_low 155 ALIGNMENT 52 Y12-17j16.p1k chr08 821 707 560657 560769 C 115 84.35 1330 reject_low 56 ALIGNMENT 0 Y12-17j16.p1k chr12 717 92 1076463 1076462 C 626 0.00 1330 reject_low 112 ALIGNMENT 69 Y12-17j16.p1k chr12 853 707 1076512 1076653 C 147 85.71 1330 reject_low 30 ALIGNMENT 39 Y12-17j16.p1k chr08 774 707 560524 560589 C 68 89.71 1330 reject_low 129 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 1849 1848 F 615 0.00 1330 reject_low 142 ALIGNMENT 51 Y12-17j16.p1k chr12 707 853 1827 1968 F 147 81.63 1330 reject_low 36 ALIGNMENT 0 Y12-17j16.p1k chr02 92 705 1845 1844 F 614 0.00 1330 reject_low 128 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 1758 1757 F 615 0.00 1330 reject_low 43 ALIGNMENT 0 Y12-17j16.p1k chr16 705 92 946028 946027 C 614 0.00 1330 reject_low 186 ALIGNMENT 0 Y12-17j16.p1k chr08 92 706 1723 1722 F 615 0.00 1330 reject_low 116 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1076618 1076617 C 615 0.00 1330 reject_low 59 ALIGNMENT 0 Y12-17j16.p1k chr12 92 705 7685 7684 F 614 0.00 1330 reject_low 180 ALIGNMENT 648 Y12-17j16.q1k chr12 889 11 4458 5318 C 879 93.74 1190 reject_low 19 ALIGNMENT 33 Y12-17j16.p1k chr16 821 707 946094 946206 C 115 79.13 1330 reject_low 138 ALIGNMENT 46 Y12-17j16.p1k chr12 810 710 1076480 1076578 C 101 84.16 1330 reject_low 83 ALIGNMENT 27 Y12-17j16.p1k chr05 706 749 1901 1943 F 44 90.91 1330 reject_low 187 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 1971 1970 F 615 0.00 1330 reject_low 118 ALIGNMENT 63 Y12-17j16.p1k chr16 821 718 946202 946303 C 104 89.42 1330 reject_low 45 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1722 1721 F 615 0.00 1330 reject_low 139 ALIGNMENT 0 Y12-17j16.p1k chr16 92 717 1818 1817 F 626 0.00 1330 reject_low 172 ALIGNMENT 0 Y12-17j16.p1k chr05 706 92 575282 575281 C 615 0.00 1330 reject_low 25 ALIGNMENT 33 Y12-17j16.p1k chr16 821 707 945986 946098 C 115 79.13 1330 reject_low 137 ALIGNMENT 60 Y12-17j16.p1k chr12 718 821 1874 1975 F 104 88.46 1330 reject_low 19 ALIGNMENT 0 Y12-17j16.p1k chr15 706 92 1089582 1089581 C 615 0.00 1330 reject_low 62 ALIGNMENT 52 Y12-17j16.p1k chr12 821 707 1076505 1076617 C 115 84.35 1330 reject_low 59 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946279 946278 C 615 0.00 1330 reject_low 68 ALIGNMENT 35 Y12-17j16.p1k chr05 774 706 575000 575066 C 69 86.96 1330 reject_low 143 ALIGNMENT 0 Y12-17j16.p1k chr06 92 706 1001 1000 F 615 0.00 1330 reject_low 140 ALIGNMENT 30 Y12-17j16.p1k chr12 821 707 1076289 1076401 C 115 78.26 1330 reject_low 151 ALIGNMENT 61 Y12-17j16.p1k chr02 707 821 1630 1742 F 115 86.96 1330 reject_low 46 ALIGNMENT 0 Y12-17j16.p1k chr14 92 717 1801 1800 F 626 0.00 1330 reject_low 101 ALIGNMENT 691 Y12-17j16.p1k chr16 35 912 815 1682 F 878 94.19 1330 ambiguous_tel 4 ALIGNMENT 45 Y12-17j16.p1k chr02 707 810 2026 2127 F 104 83.65 1330 reject_low 88 ALIGNMENT 0 Y12-17j16.p1k chr14 92 705 1933 1932 F 614 0.00 1330 reject_low 183 ALIGNMENT 30 Y12-17j16.p1k chr14 718 785 1909 1974 F 68 85.29 1330 reject_low 170 ALIGNMENT 0 Y12-17j16.p1k chr08 706 92 560662 560661 C 615 0.00 1330 reject_low 64 ALIGNMENT 30 Y12-17j16.p1k chr08 774 707 560488 560553 C 68 85.29 1330 reject_low 174 ALIGNMENT 46 Y12-17j16.p1k chr14 710 810 1685 1783 F 101 84.16 1330 reject_low 85 ALIGNMENT 695 Y12-17j16.p1k chr02 35 853 818 1627 F 819 96.09 1330 reject_low 16 ALIGNMENT 0 Y12-17j16.p1k chr12 92 717 7661 7660 F 626 0.00 1330 reject_low 167 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 1827 1826 F 615 0.00 1330 reject_low 36 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 1830 1829 F 615 0.00 1330 reject_low 75 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946207 946206 C 615 0.00 1330 reject_low 138 ALIGNMENT 0 Y12-17j16.p1k chr16 92 706 1663 1662 F 615 0.00 1330 reject_low 126 ALIGNMENT 705 Y12-17j16.q1k chr14 889 11 5408 6274 C 879 95.34 1190 ambiguous_tel 5 ALIGNMENT 38 Y12-17j16.p1k chr12 810 718 1076372 1076462 C 93 82.80 1330 reject_low 112 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 1755 1754 F 615 0.00 1330 reject_low 50 ALIGNMENT 693 Y12-17j16.p1k chr09 35 821 1018 1798 F 787 96.95 1330 ambiguous_tel 6 ALIGNMENT 0 Y12-17j16.p1k chr07 706 92 1089107 1089106 C 615 0.00 1330 reject_low 190 ALIGNMENT 39 Y12-17j16.p1k chr10 718 821 2004 2105 F 104 81.73 1330 reject_low 95 ALIGNMENT 0 Y12-17j16.p1k chr14 92 706 1754 1753 F 615 0.00 1330 reject_low 124 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 1866 1865 F 615 0.00 1330 reject_low 141 ALIGNMENT 45 Y12-17j16.p1k chr10 744 912 1669 1832 F 169 78.70 1330 reject_low 22 ALIGNMENT 554 Y12-17j16.q1k chr05 852 80 5400 6136 C 773 93.53 1190 reject_low 17 ALIGNMENT 0 Y12-17j16.p1k chr04 706 92 1530453 1530452 C 615 0.00 1330 reject_low 24 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 1738 1737 F 615 0.00 1330 reject_low 114 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 2082 2081 F 615 0.00 1330 reject_low 107 ALIGNMENT 735 Y12-17j16.q1k chr10 935 11 5738 6646 C 925 95.24 1190 ambiguous_tel 0 ALIGNMENT 28 Y12-17j16.p1k chr05 762 706 574903 574958 C 57 85.96 1330 reject_low 175 ALIGNMENT 69 Y12-17j16.p1k chr13 707 853 1703 1844 F 147 85.71 1330 reject_low 31 ALIGNMENT 0 Y12-17j16.p1k chr12 92 709 7437 7436 F 618 0.00 1330 reject_low 81 ALIGNMENT 61 Y12-17j16.p1k chr09 707 833 1794 1918 F 127 85.04 1330 reject_low 38 ALIGNMENT 691 Y12-17j16.p1k chr12 912 35 1069827 1070694 C 878 94.19 1330 reject_low 15 ALIGNMENT 0 Y12-17j16.p1k chr08 706 92 560590 560589 C 615 0.00 1330 reject_low 129 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1506 1505 F 615 0.00 1330 reject_low 37 ALIGNMENT 0 Y12-17j16.p1k chr12 92 717 2018 2017 F 626 0.00 1330 reject_low 98 ALIGNMENT 54 Y12-17j16.p1k chr16 853 707 946209 946350 C 147 82.31 1330 reject_low 35 ALIGNMENT 691 Y12-17j16.p1k chr15 912 35 1089454 1090321 C 878 94.19 1330 ambiguous_tel 1 ALIGNMENT 30 Y12-17j16.p1k chr13 718 785 2002 2067 F 68 85.29 1330 reject_low 169 ALIGNMENT 0 Y12-17j16.p1k chr12 717 92 1076355 1076354 C 626 0.00 1330 reject_low 168 ALIGNMENT 40 Y12-17j16.p1k chr08 707 774 1723 1788 F 68 89.71 1330 reject_low 116 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 1558 1557 F 615 0.00 1330 reject_low 93 ALIGNMENT 61 Y12-17j16.p1k chr10 707 833 1777 1901 F 127 85.04 1330 reject_low 39 ALIGNMENT 696 Y12-17j16.p1k chr12 35 821 1015 1795 F 787 97.08 1330 ambiguous_tel 8 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 1630 1629 F 615 0.00 1330 reject_low 46 ALIGNMENT 26 Y12-17j16.p1k chr08 762 718 560427 560470 C 45 88.89 1330 reject_low 189 ALIGNMENT 51 Y12-17j16.p1k chr16 810 707 946177 946278 C 104 85.58 1330 reject_low 68 ALIGNMENT 30 Y12-17j16.p1k chr05 785 718 574917 574982 C 68 85.29 1330 reject_low 163 ALIGNMENT 34 Y12-17j16.p1k chr13 707 821 1847 1959 F 115 79.13 1330 reject_low 122 ALIGNMENT 69 Y12-17j16.p1k chr15 853 707 1089476 1089617 C 147 85.71 1330 reject_low 33 ALIGNMENT 0 Y12-17j16.p1k chr14 92 706 1862 1861 F 615 0.00 1330 reject_low 125 ALIGNMENT 57 Y12-17j16.p1k chr12 707 810 1755 1856 F 104 87.50 1330 reject_low 50 ALIGNMENT 46 Y12-17j16.p1k chr13 710 810 1778 1876 F 101 84.16 1330 reject_low 84 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 7398 7397 F 615 0.00 1330 reject_low 57 ALIGNMENT 0 Y12-17j16.p1k chr12 709 92 1076579 1076578 C 618 0.00 1330 reject_low 83 ALIGNMENT 33 Y12-17j16.p1k chr12 821 707 1076397 1076509 C 115 79.13 1330 reject_low 135 ALIGNMENT 0 Y12-17j16.p1k chr13 92 717 1894 1893 F 626 0.00 1330 reject_low 100 ALIGNMENT 28 Y12-17j16.p1k chr12 706 762 2150 2205 F 57 85.96 1330 reject_low 179 ALIGNMENT 40 Y12-17j16.p1k chr02 707 774 1738 1803 F 68 89.71 1330 reject_low 114 ALIGNMENT 0 Y12-17j16.p1k chr15 717 92 1089427 1089426 C 626 0.00 1330 reject_low 113 ALIGNMENT 33 Y12-17j16.p1k chr05 821 707 575025 575137 C 115 79.13 1330 reject_low 132 ALIGNMENT 0 Y12-17j16.p1k chr12 705 92 1076439 1076438 C 614 0.00 1330 reject_low 156 ALIGNMENT 0 Y12-17j16.p1k chr05 705 92 575067 575066 C 614 0.00 1330 reject_low 143 ALIGNMENT 0 Y12-17j16.p1k chr15 705 92 1089295 1089294 C 614 0.00 1330 reject_low 184 ALIGNMENT 40 Y12-17j16.p1k chr02 707 774 2242 2307 F 68 89.71 1330 reject_low 115 ALIGNMENT 32 Y12-17j16.p1k chr12 774 706 1076372 1076438 C 69 85.51 1330 reject_low 156 ALIGNMENT 34 Y12-17j16.p1k chr13 707 821 1955 2067 F 115 79.13 1330 reject_low 123 ALIGNMENT 0 Y12-17j16.p1k chr09 92 705 2189 2188 F 614 0.00 1330 reject_low 177 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 1719 1718 F 615 0.00 1330 reject_low 71 ALIGNMENT 0 Y12-17j16.p1k chr14 92 706 1646 1645 F 615 0.00 1330 reject_low 61 ALIGNMENT 0 Y12-17j16.p1k chr12 92 705 7577 7576 F 614 0.00 1330 reject_low 146 ALIGNMENT 0 Y12-17j16.p1k chr05 709 92 575207 575206 C 618 0.00 1330 reject_low 78 ALIGNMENT 0 Y12-17j16.p1k chr04 706 92 1530417 1530416 C 615 0.00 1330 reject_low 53 ALIGNMENT 41 Y12-17j16.p1k chr16 810 718 946069 946159 C 93 83.87 1330 reject_low 103 ALIGNMENT 33 Y12-17j16.p1k chr02 718 774 2073 2127 F 57 89.47 1330 reject_low 158 ALIGNMENT 0 Y12-17j16.p1k chr02 92 717 1677 1676 F 626 0.00 1330 reject_low 91 ALIGNMENT 714 Y12-17j16.p1k chr05 35 821 802 1582 F 787 97.84 1330 reject_low 17 ALIGNMENT 0 Y12-17j16.p1k chr12 92 717 2126 2125 F 626 0.00 1330 reject_low 166 ALIGNMENT 33 Y12-17j16.p1k chr12 821 707 1069734 1069846 C 115 79.13 1330 reject_low 134 ALIGNMENT 30 Y12-17j16.p1k chr15 821 707 1089253 1089365 C 115 78.26 1330 reject_low 152 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 1974 1973 F 615 0.00 1330 reject_low 47 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 7506 7505 F 615 0.00 1330 reject_low 120 ALIGNMENT 48 Y12-17j16.p1k chr09 707 810 1830 1931 F 104 84.62 1330 reject_low 75 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 1957 1956 F 615 0.00 1330 reject_low 48 ALIGNMENT 52 Y12-17j16.p1k chr07 821 707 1089210 1089322 C 115 84.35 1330 reject_low 55 ALIGNMENT 38 Y12-17j16.p1k chr16 912 707 946187 946386 C 206 77.18 1330 reject_low 23 ALIGNMENT 46 Y12-17j16.p1k chr12 707 821 1719 1831 F 115 82.61 1330 reject_low 71 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1542 1541 F 615 0.00 1330 reject_low 40 ALIGNMENT 0 Y12-17j16.p1k chr08 717 92 560471 560470 C 626 0.00 1330 reject_low 189 ALIGNMENT 41 Y12-17j16.p1k chr16 718 810 1710 1800 F 93 83.87 1330 reject_low 102 ALIGNMENT 0 Y12-17j16.p1k chr08 706 92 560806 560805 C 615 0.00 1330 reject_low 27 ALIGNMENT 0 Y12-17j16.p1k chr12 717 92 1069800 1069799 C 626 0.00 1330 reject_low 111 ALIGNMENT 30 Y12-17j16.p1k chr02 718 821 1821 1922 F 104 78.85 1330 reject_low 153 ALIGNMENT 705 Y12-17j16.q1k chr16 889 11 5317 6183 C 879 95.34 1190 ambiguous_tel 4 ALIGNMENT 691 Y12-17j16.p1k chr12 912 35 1076490 1077357 C 878 94.19 1330 ambiguous_tel 10 ALIGNMENT 28 Y12-17j16.p1k chr16 706 762 1842 1897 F 57 85.96 1330 reject_low 185 ALIGNMENT 37 Y12-17j16.p1k chr05 707 774 1722 1787 F 68 88.24 1330 reject_low 139 ALIGNMENT 0 Y12-17j16.p1k chr12 709 92 1069916 1069915 C 618 0.00 1330 reject_low 82 ALIGNMENT 52 Y12-17j16.p1k chr02 707 821 2170 2282 F 115 84.35 1330 reject_low 52 ALIGNMENT 0 Y12-17j16.p1k chr02 92 705 1953 1952 F 614 0.00 1330 reject_low 90 ALIGNMENT 35 Y12-17j16.p1k chr13 706 774 1918 1984 F 69 86.96 1330 reject_low 147 ALIGNMENT 30 Y12-17j16.p1k chr12 718 785 7661 7726 F 68 85.29 1330 reject_low 167 ALIGNMENT 691 Y12-17j16.p1k chr05 912 35 575118 575985 C 878 94.19 1330 reject_low 11 ALIGNMENT 34 Y12-17j16.q1k chr02 52 11 5462 5503 C 42 97.62 1190 reject_low 16 ALIGNMENT 0 Y12-17j16.p1k chr12 92 705 2150 2149 F 614 0.00 1330 reject_low 179 ALIGNMENT 28 Y12-17j16.p1k chr16 762 706 945972 946027 C 57 85.96 1330 reject_low 186 ALIGNMENT 0 Y12-17j16.p1k chr08 92 706 1687 1686 F 615 0.00 1330 reject_low 67 ALIGNMENT 41 Y12-17j16.p1k chr05 707 920 1578 1785 F 214 76.17 1330 reject_low 20 ALIGNMENT 0 Y12-17j16.p1k chr16 92 706 1771 1770 F 615 0.00 1330 reject_low 127 ALIGNMENT 46 Y12-17j16.p1k chr12 810 710 1069817 1069915 C 101 84.16 1330 reject_low 82 ALIGNMENT 649 Y12-17j16.q1k chr12 935 11 9951 10853 C 925 92.76 1190 ambiguous_tel 8 ALIGNMENT 28 Y12-17j16.p1k chr12 762 706 1076275 1076330 C 57 85.96 1330 reject_low 181 ALIGNMENT 45 Y12-17j16.p1k chr02 718 811 1677 1768 F 94 85.11 1330 reject_low 91 ALIGNMENT 0 Y12-17j16.p1k chr15 706 92 1089366 1089365 C 615 0.00 1330 reject_low 152 ALIGNMENT 37 Y12-17j16.p1k chr05 707 821 1830 1942 F 115 80.00 1330 reject_low 104 ALIGNMENT 34 Y12-17j16.p1k chr12 707 821 1971 2083 F 115 79.13 1330 reject_low 118 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1578 1577 F 615 0.00 1330 reject_low 20 ALIGNMENT 0 Y12-17j16.p1k chr13 92 705 2026 2025 F 614 0.00 1330 reject_low 182 ALIGNMENT 0 Y12-17j16.q1k chr02 79 53 5462 5461 C 27 0.00 1190 reject_low 16 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1076510 1076509 C 615 0.00 1330 reject_low 135 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1076654 1076653 C 615 0.00 1330 reject_low 30 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 2046 2045 F 615 0.00 1330 reject_low 65 ALIGNMENT 33 Y12-17j16.p1k chr04 821 707 1530196 1530308 C 115 79.13 1330 reject_low 130 ALIGNMENT 46 Y12-17j16.p1k chr12 710 810 7437 7535 F 101 84.16 1330 reject_low 81 ALIGNMENT 30 Y12-17j16.p1k chr05 718 785 1877 1942 F 68 85.29 1330 reject_low 162 ALIGNMENT 41 Y12-17j16.p1k chr07 810 718 1089077 1089167 C 93 83.87 1330 reject_low 97 ALIGNMENT 0 Y12-17j16.p1k chr04 709 92 1530378 1530377 C 618 0.00 1330 reject_low 77 ALIGNMENT 52 Y12-17j16.p1k chr14 707 821 1646 1758 F 115 84.35 1330 reject_low 61 ALIGNMENT 39 Y12-17j16.p1k chr09 718 821 2021 2122 F 104 81.73 1330 reject_low 94 ALIGNMENT 0 Y12-17j16.p1k chr16 92 705 1842 1841 F 614 0.00 1330 reject_low 185 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 1777 1776 F 615 0.00 1330 reject_low 39 ALIGNMENT 649 Y12-17j16.q1k chr13 935 11 4292 5194 C 925 92.76 1190 ambiguous_tel 2 ALIGNMENT 0 Y12-17j16.p1k chr15 717 92 1089319 1089318 C 626 0.00 1330 reject_low 171 ALIGNMENT 0 Y12-17j16.p1k chr05 92 705 1901 1900 F 614 0.00 1330 reject_low 187 ALIGNMENT 0 Y12-17j16.p1k chr14 92 705 1825 1824 F 614 0.00 1330 reject_low 148 ALIGNMENT 558 Y12-17j16.q1k chr12 80 935 1065530 1066345 F 856 91.59 1190 reject_low 15 ALIGNMENT 46 Y12-17j16.p1k chr15 810 710 1089444 1089542 C 101 84.16 1330 reject_low 86 ALIGNMENT 0 Y12-17j16.p1k chr16 92 706 1555 1554 F 615 0.00 1330 reject_low 63 ALIGNMENT 0 Y12-17j16.p1k chr05 706 92 575030 575029 C 615 0.00 1330 reject_low 131 ALIGNMENT 0 Y12-17j16.p1k chr15 705 92 1089403 1089402 C 614 0.00 1330 reject_low 157 ALIGNMENT 33 Y12-17j16.p1k chr15 821 707 1089361 1089473 C 115 79.13 1330 reject_low 136 ALIGNMENT 0 Y12-17j16.p1k chr08 92 705 1866 1865 F 614 0.00 1330 reject_low 176 ALIGNMENT 26 Y12-17j16.p1k chr02 718 762 2361 2404 F 45 88.89 1330 reject_low 188 ALIGNMENT 0 Y12-17j16.p1k chr05 706 92 575138 575137 C 615 0.00 1330 reject_low 132 ALIGNMENT 0 Y12-17j16.p1k chr14 92 717 1909 1908 F 626 0.00 1330 reject_low 170 ALIGNMENT 31 Y12-17j16.p1k chr02 707 774 2278 2343 F 68 85.29 1330 reject_low 160 ALIGNMENT 0 Y12-17j16.p1k chr04 717 92 1530262 1530261 C 626 0.00 1330 reject_low 110 ALIGNMENT 0 Y12-17j16.p1k chr05 717 92 575091 575090 C 626 0.00 1330 reject_low 96 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1614 1613 F 615 0.00 1330 reject_low 42 ALIGNMENT 70 Y12-17j16.p1k chr02 707 821 1522 1634 F 115 89.57 1330 reject_low 41 ALIGNMENT 0 Y12-17j16.p1k chr04 706 92 1530309 1530308 C 615 0.00 1330 reject_low 130 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 2242 2241 F 615 0.00 1330 reject_low 115 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946351 946350 C 615 0.00 1330 reject_low 35 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 2029 2028 F 615 0.00 1330 reject_low 66 ALIGNMENT 52 Y12-17j16.p1k chr12 821 707 1069842 1069954 C 115 84.35 1330 reject_low 58 ALIGNMENT 20 Y12-17j16.p1k chr06 718 759 1048 1088 F 42 85.71 1330 reject_low 192 ALIGNMENT 714 Y12-17j16.q1k chr16 11 889 942852 943718 F 879 95.56 1190 ambiguous_tel 7 ALIGNMENT 46 Y12-17j16.p1k chr07 810 710 1089185 1089283 C 101 84.16 1330 reject_low 79 ALIGNMENT 67 Y12-17j16.p1k chr05 707 821 1614 1726 F 115 88.70 1330 reject_low 42 ALIGNMENT 0 Y12-17j16.p1k chr14 92 706 1610 1609 F 615 0.00 1330 reject_low 32 ALIGNMENT 52 Y12-17j16.p1k chr12 707 821 7398 7510 F 115 84.35 1330 reject_low 57 ALIGNMENT 52 Y12-17j16.p1k chr05 821 707 575133 575245 C 115 84.35 1330 reject_low 54 ALIGNMENT 0 Y12-17j16.p1k chr13 92 706 1847 1846 F 615 0.00 1330 reject_low 122 ALIGNMENT 42 Y12-17j16.p1k chr02 707 810 1558 1659 F 104 82.69 1330 reject_low 93 ALIGNMENT 0 Y12-17j16.p1k chr10 92 743 1669 1668 F 652 0.00 1330 reject_low 22 ALIGNMENT 34 Y12-17j16.p1k chr12 707 821 7506 7618 F 115 79.13 1330 reject_low 120 ALIGNMENT 654 Y12-17j16.q1k chr04 11 889 1525793 1526654 F 879 93.74 1190 ambiguous_tel 9 ALIGNMENT 696 Y12-17j16.p1k chr08 35 821 983 1763 F 787 97.08 1330 reject_low 13 ALIGNMENT 28 Y12-17j16.p1k chr10 706 762 2172 2227 F 57 85.96 1330 reject_low 178 ALIGNMENT 30 Y12-17j16.p1k chr12 718 785 2126 2191 F 68 85.29 1330 reject_low 166 ALIGNMENT 0 Y12-17j16.q1k chr12 53 79 1065530 1065529 F 27 0.00 1190 reject_low 15 ALIGNMENT 705 Y12-17j16.q1k chr07 11 889 1084694 1085560 F 879 95.22 1190 ambiguous_tel 3 ALIGNMENT 0 Y12-17j16.p1k chr16 717 92 946160 946159 C 626 0.00 1330 reject_low 103 ALIGNMENT 73 Y12-17j16.p1k chr05 707 821 1542 1654 F 115 90.43 1330 reject_low 40 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 7614 7613 F 615 0.00 1330 reject_low 121 ALIGNMENT 41 Y12-17j16.p1k chr05 810 718 575000 575090 C 93 83.87 1330 reject_low 96 ALIGNMENT 0 Y12-17j16.p1k chr05 717 92 574983 574982 C 626 0.00 1330 reject_low 163 ALIGNMENT 51 Y12-17j16.p1k chr08 821 707 560549 560661 C 115 84.35 1330 reject_low 64 ALIGNMENT 0 Y12-17j16.p1k chr15 709 92 1089543 1089542 C 618 0.00 1330 reject_low 86 ALIGNMENT 52 Y12-17j16.p1k chr16 707 821 1555 1667 F 115 84.35 1330 reject_low 63 ALIGNMENT 552 Y12-17j16.q1k chr08 935 111 4148 4951 C 825 91.76 1190 reject_low 13 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946423 946422 C 615 0.00 1330 reject_low 51 ALIGNMENT 0 Y12-17j16.q1k chr08 53 79 557371 557370 F 27 0.00 1190 reject_low 14 ALIGNMENT 61 Y12-17j16.p1k chr10 707 821 1957 2069 F 115 86.96 1330 reject_low 48 ALIGNMENT 33 Y12-17j16.p1k chr05 821 707 574917 575029 C 115 79.13 1330 reject_low 131 ALIGNMENT 34 Y12-17j16.q1k chr08 11 52 557329 557370 F 42 97.62 1190 reject_low 14 ALIGNMENT 0 Y12-17j16.p1k chr13 92 706 1739 1738 F 615 0.00 1330 reject_low 60 ALIGNMENT 64 Y12-17j16.p1k chr09 707 821 1758 1870 F 115 87.83 1330 reject_low 43 ALIGNMENT 0 Y12-17j16.p1k chr10 92 717 2004 2003 F 626 0.00 1330 reject_low 95 ALIGNMENT 0 Y12-17j16.p1k chr16 92 706 1519 1518 F 615 0.00 1330 reject_low 34 ALIGNMENT 32 Y12-17j16.p1k chr15 774 706 1089336 1089402 C 69 85.51 1330 reject_low 157 ALIGNMENT 41 Y12-17j16.p1k chr12 718 810 7553 7643 F 93 83.87 1330 reject_low 99 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 1741 1740 F 615 0.00 1330 reject_low 44 ALIGNMENT 21 Y12-17j16.p1k chr12 760 707 1069686 1069738 C 54 83.33 1330 reject_low 191 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1069739 1069738 C 615 0.00 1330 reject_low 191 ALIGNMENT 35 Y12-17j16.p1k chr07 774 706 1089077 1089143 C 69 86.96 1330 reject_low 144 ALIGNMENT 43 Y12-17j16.p1k chr09 707 774 2082 2147 F 68 91.18 1330 reject_low 107 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946459 946458 C 615 0.00 1330 reject_low 72 ALIGNMENT 0 Y12-17j16.p1k chr07 706 92 1089323 1089322 C 615 0.00 1330 reject_low 55 ALIGNMENT 37 Y12-17j16.p1k chr09 707 774 1866 1931 F 68 88.24 1330 reject_low 141 ALIGNMENT 0 Y12-17j16.p1k chr13 92 706 1955 1954 F 615 0.00 1330 reject_low 123 ALIGNMENT 0 Y12-17j16.p1k chr02 92 717 2361 2360 F 626 0.00 1330 reject_low 188 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 1813 1812 F 615 0.00 1330 reject_low 76 ALIGNMENT 691 Y12-17j16.p1k chr07 912 35 1089195 1090062 C 878 94.19 1330 ambiguous_tel 3 ALIGNMENT 35 Y12-17j16.p1k chr02 706 810 1845 1947 F 105 80.00 1330 reject_low 128 ALIGNMENT 41 Y12-17j16.p1k chr12 718 810 2018 2108 F 93 83.87 1330 reject_low 98 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 2065 2064 F 615 0.00 1330 reject_low 108 ALIGNMENT 34 Y12-17j16.q1k chr05 52 11 6137 6178 C 42 97.62 1190 reject_low 17 ALIGNMENT 41 Y12-17j16.p1k chr14 718 810 1801 1891 F 93 83.87 1330 reject_low 101 ALIGNMENT 688 Y12-17j16.p1k chr13 35 912 999 1866 F 878 94.08 1330 ambiguous_tel 2 ALIGNMENT 0 Y12-17j16.p1k chr08 706 92 560770 560769 C 615 0.00 1330 reject_low 56 ALIGNMENT 51 Y12-17j16.p1k chr08 707 810 1687 1788 F 104 85.58 1330 reject_low 67 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 1522 1521 F 615 0.00 1330 reject_low 41 ALIGNMENT 0 Y12-17j16.p1k chr13 92 705 1918 1917 F 614 0.00 1330 reject_low 147 ALIGNMENT 0 Y12-17j16.p1k chr05 92 717 1877 1876 F 626 0.00 1330 reject_low 162 ALIGNMENT 37 Y12-17j16.p1k chr06 707 774 1001 1066 F 68 88.24 1330 reject_low 140 ALIGNMENT 655 Y12-17j16.q1k chr15 11 935 1084958 1085861 F 925 92.76 1190 ambiguous_tel 1 ALIGNMENT 0 Y12-17j16.p1k chr09 92 717 2021 2020 F 626 0.00 1330 reject_low 94 ALIGNMENT 37 Y12-17j16.p1k chr10 707 774 1849 1914 F 68 88.24 1330 reject_low 142 ALIGNMENT 35 Y12-17j16.p1k chr16 774 706 946069 946135 C 69 86.96 1330 reject_low 150 ALIGNMENT 0 Y12-17j16.p1k chr13 92 706 1703 1702 F 615 0.00 1330 reject_low 31 ALIGNMENT 35 Y12-17j16.p1k chr02 706 821 1881 1994 F 116 79.31 1330 reject_low 109 ALIGNMENT 702 Y12-17j16.p1k chr16 821 35 946382 947162 C 787 97.33 1330 ambiguous_tel 7 ALIGNMENT 0 Y12-17j16.p1k chr08 92 706 1759 1758 F 615 0.00 1330 reject_low 161 ALIGNMENT 69 Y12-17j16.p1k chr16 707 853 1519 1660 F 147 85.71 1330 reject_low 34 ALIGNMENT 0 Y12-17j16.p1k chr13 92 717 2002 2001 F 626 0.00 1330 reject_low 169 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 2026 2025 F 615 0.00 1330 reject_low 88 ALIGNMENT 0 Y12-17j16.p1k chr10 92 706 2101 2100 F 615 0.00 1330 reject_low 106 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 7362 7361 F 615 0.00 1330 reject_low 28 ALIGNMENT 34 Y12-17j16.p1k chr14 707 821 1754 1866 F 115 79.13 1330 reject_low 124 ALIGNMENT 28 Y12-17j16.p1k chr15 762 706 1089239 1089294 C 57 85.96 1330 reject_low 184 ALIGNMENT 0 Y12-17j16.p1k chr16 92 705 1734 1733 F 614 0.00 1330 reject_low 149 ALIGNMENT 41 Y12-17j16.p1k chr13 718 810 1894 1984 F 93 83.87 1330 reject_low 100 ALIGNMENT 0 Y12-17j16.p1k chr07 709 92 1089284 1089283 C 618 0.00 1330 reject_low 79 ALIGNMENT 0 Y12-17j16.p1k chr07 717 92 1089168 1089167 C 626 0.00 1330 reject_low 97 ALIGNMENT 34 Y12-17j16.p1k chr16 707 821 1663 1775 F 115 79.13 1330 reject_low 126 ALIGNMENT 30 Y12-17j16.p1k chr12 785 718 1076289 1076354 C 68 85.29 1330 reject_low 168 ALIGNMENT 693 Y12-17j16.p1k chr10 35 821 1001 1781 F 787 96.95 1330 ambiguous_tel 0 ALIGNMENT 30 Y12-17j16.p1k chr16 718 785 1818 1883 F 68 85.29 1330 reject_low 172 ALIGNMENT 46 Y12-17j16.p1k chr08 810 710 560632 560730 C 101 84.16 1330 reject_low 80 ALIGNMENT 35 Y12-17j16.p1k chr12 706 774 7577 7643 F 69 86.96 1330 reject_low 146 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1650 1649 F 615 0.00 1330 reject_low 49 ALIGNMENT 45 Y12-17j16.p1k chr09 744 912 1686 1849 F 169 78.70 1330 reject_low 21 ALIGNMENT 33 Y12-17j16.p1k chr02 718 774 2145 2199 F 57 89.47 1330 reject_low 159 ALIGNMENT 0 Y12-17j16.p1k chr07 705 92 1089144 1089143 C 614 0.00 1330 reject_low 144 ALIGNMENT 43 Y12-17j16.p1k chr10 707 774 2065 2130 F 68 91.18 1330 reject_low 108 ALIGNMENT 0 Y12-17j16.p1k chr12 705 92 1076331 1076330 C 614 0.00 1330 reject_low 181 ALIGNMENT 0 Y12-17j16.p1k chr07 706 92 1089359 1089358 C 615 0.00 1330 reject_low 26 ALIGNMENT 46 Y12-17j16.p1k chr05 810 710 575108 575206 C 101 84.16 1330 reject_low 78 ALIGNMENT 619 Y12-17j16.q1k chr06 881 11 3504 4341 C 871 93.23 1190 reject_low 12 ALIGNMENT 654 Y12-17j16.q1k chr12 11 889 1071994 1072855 F 879 93.74 1190 ambiguous_tel 10 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 2278 2277 F 615 0.00 1330 reject_low 160 ALIGNMENT 0 Y12-17j16.p1k chr12 92 717 7553 7552 F 626 0.00 1330 reject_low 99 ALIGNMENT 30 Y12-17j16.p1k chr09 718 785 2165 2230 F 68 85.29 1330 reject_low 164 ALIGNMENT 0 Y12-17j16.q1k chr08 110 62 4952 4951 C 49 0.00 1190 reject_low 13 ALIGNMENT 30 Y12-17j16.p1k chr10 718 785 2148 2213 F 68 85.29 1330 reject_low 165 ALIGNMENT 52 Y12-17j16.p1k chr13 707 821 1739 1851 F 115 84.35 1330 reject_low 60 ALIGNMENT 0 Y12-17j16.p1k chr05 92 706 1686 1685 F 615 0.00 1330 reject_low 74 ALIGNMENT 69 Y12-17j16.p1k chr05 853 707 575140 575281 C 147 85.71 1330 reject_low 25 ALIGNMENT 69 Y12-17j16.p1k chr08 853 707 560664 560805 C 147 85.71 1330 reject_low 27 ALIGNMENT 35 Y12-17j16.p1k chr16 706 774 1734 1800 F 69 86.96 1330 reject_low 149 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1076402 1076401 C 615 0.00 1330 reject_low 151 ALIGNMENT 0 Y12-17j16.p1k chr08 706 92 560554 560553 C 615 0.00 1330 reject_low 174 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1069991 1069990 C 615 0.00 1330 reject_low 29 ALIGNMENT 0 Y12-17j16.p1k chr12 92 709 1902 1901 F 618 0.00 1330 reject_low 73 ALIGNMENT 48 Y12-17j16.p1k chr10 707 810 1813 1914 F 104 84.62 1330 reject_low 76 ALIGNMENT 69 Y12-17j16.p1k chr07 853 707 1089217 1089358 C 147 85.71 1330 reject_low 26 ALIGNMENT 50 Y12-17j16.p1k chr08 810 718 560524 560614 C 93 87.10 1330 reject_low 70 ALIGNMENT 0 Y12-17j16.q1k chr05 79 53 6137 6136 C 27 0.00 1190 reject_low 17 ALIGNMENT 28 Y12-17j16.p1k chr14 706 762 1933 1988 F 57 85.96 1330 reject_low 183 ALIGNMENT 30 Y12-17j16.p1k chr15 785 718 1089253 1089318 C 68 85.29 1330 reject_low 171 ALIGNMENT 0 Y12-17j16.p1k chr02 92 705 1881 1880 F 614 0.00 1330 reject_low 109 ALIGNMENT 54 Y12-17j16.p1k chr10 707 810 2029 2130 F 104 86.54 1330 reject_low 66 ALIGNMENT 0 Y12-17j16.p1k chr14 92 709 1685 1684 F 618 0.00 1330 reject_low 85 ALIGNMENT 0 Y12-17j16.p1k chr12 92 705 2042 2041 F 614 0.00 1330 reject_low 145 ALIGNMENT 52 Y12-17j16.p1k chr04 821 707 1530304 1530416 C 115 84.35 1330 reject_low 53 ALIGNMENT 685 Y12-17j16.p1k chr12 35 912 6658 7525 F 878 93.96 1330 reject_low 18 ALIGNMENT 64 Y12-17j16.p1k chr10 707 821 1741 1853 F 115 87.83 1330 reject_low 44 ALIGNMENT 0 Y12-17j16.p1k chr02 92 701 1769 1768 F 610 0.00 1330 reject_low 92 ALIGNMENT 28 Y12-17j16.p1k chr13 706 762 2026 2081 F 57 85.96 1330 reject_low 182 ALIGNMENT 0 Y12-17j16.p1k chr16 717 92 946304 946303 C 626 0.00 1330 reject_low 45 ALIGNMENT 0 Y12-17j16.p1k chr16 706 92 946099 946098 C 615 0.00 1330 reject_low 137 ALIGNMENT 46 Y12-17j16.p1k chr16 710 810 1594 1692 F 101 84.16 1330 reject_low 87 ALIGNMENT 37 Y12-17j16.p1k chr09 707 821 2118 2230 F 115 80.00 1330 reject_low 105 ALIGNMENT 688 Y12-17j16.p1k chr08 912 35 560642 561509 C 878 94.08 1330 reject_low 14 ALIGNMENT 34 Y12-17j16.p1k chr16 707 821 1771 1883 F 115 79.13 1330 reject_low 127 ALIGNMENT 0 Y12-17j16.p1k chr02 92 717 1821 1820 F 626 0.00 1330 reject_low 153 ALIGNMENT 0 Y12-17j16.p1k chr10 92 717 2148 2147 F 626 0.00 1330 reject_low 165 ALIGNMENT 49 Y12-17j16.p1k chr12 710 810 1902 2000 F 101 85.15 1330 reject_low 73 ALIGNMENT 30 Y12-17j16.p1k chr16 785 718 945986 946051 C 68 85.29 1330 reject_low 173 ALIGNMENT 0 Y12-17j16.p1k chr09 92 743 1686 1685 F 652 0.00 1330 reject_low 21 ALIGNMENT 0 Y12-17j16.p1k chr09 92 706 1794 1793 F 615 0.00 1330 reject_low 38 ALIGNMENT 647 Y12-17j16.p1k chr06 35 774 225 958 F 740 96.89 1330 reject_low 12 ALIGNMENT 0 Y12-17j16.p1k chr02 92 706 2098 2097 F 615 0.00 1330 reject_low 89 ALIGNMENT 0 Y12-17j16.p1k chr12 92 706 1791 1790 F 615 0.00 1330 reject_low 117 ALIGNMENT 734 Y12-17j16.q1k chr09 889 11 5797 6663 C 879 96.36 1190 ambiguous_tel 6 ALIGNMENT 0 Y12-17j16.p1k chr08 717 92 560615 560614 C 626 0.00 1330 reject_low 70 ALIGNMENT 0 Y12-17j16.p1k chr12 706 92 1069955 1069954 C 615 0.00 1330 reject_low 58 ALIGNMENT 0 Y12-17j16.p1k chr02 92 717 2217 2216 F 626 0.00 1330 reject_low 69 ALIGNMENT 0 Y12-17j16.p1k chr05 706 92 575246 575245 C 615 0.00 1330 reject_low 54 ALIGNMENT 31 Y12-17j16.p1k chr08 707 774 1759 1824 F 68 85.29 1330 reject_low 161 ALIGNMENT 0 Y12-17j16.p1k chr08 709 92 560731 560730 C 618 0.00 1330 reject_low 80 ALIGNMENT 936 Y12-17j17.p1k chr16 14 1106 184786 185884 F 1093 96.52 1234 accept 0 ALIGNMENT 21 Y12-17j17.p1k chr07 647 609 245646 245684 C 39 97.44 1234 reject_low 7 ALIGNMENT 24 Y12-17j17.p1k chr04 634 598 654334 654370 C 37 100.00 1234 reject_low 3 ALIGNMENT 0 Y12-17j17.p1k chr09 647 857 169506 169505 F 211 0.00 1234 reject_low 6 ALIGNMENT 0 Y12-17j17.p1k chr04 597 62 654371 654370 C 536 0.00 1234 reject_low 3 ALIGNMENT 21 Y12-17j17.p1k chr05 598 646 83163 83211 F 49 93.88 1234 reject_low 5 ALIGNMENT 21 Y12-17j17.p1k chr02 646 598 72348 72396 C 49 93.88 1234 reject_low 4 ALIGNMENT 24 Y12-17j17.p1k chr02 647 598 780355 780404 C 50 94.00 1234 reject_low 1 ALIGNMENT 0 Y12-17j17.p1k chr07 608 62 245685 245684 C 547 0.00 1234 reject_low 7 ALIGNMENT 0 Y12-17j17.p1k chr02 597 62 780405 780404 C 536 0.00 1234 reject_low 1 ALIGNMENT 0 Y12-17j17.p1k chr04 857 635 654335 654334 C 223 0.00 1234 reject_low 3 ALIGNMENT 0 Y12-17j17.p1k chr05 647 857 83211 83210 F 211 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-17j17.p1k chr02 857 648 780356 780355 C 210 0.00 1234 reject_low 1 ALIGNMENT 0 Y12-17j17.p1k chr02 857 647 72349 72348 C 211 0.00 1234 reject_low 4 ALIGNMENT 0 Y12-17j17.p1k chr07 857 648 245647 245646 C 210 0.00 1234 reject_low 7 ALIGNMENT 0 Y12-17j17.p1k chr13 62 597 588610 588609 F 536 0.00 1234 reject_low 2 ALIGNMENT 0 Y12-17j17.p1k chr09 62 597 169458 169457 F 536 0.00 1234 reject_low 6 ALIGNMENT 21 Y12-17j17.p1k chr09 598 646 169458 169506 F 49 93.88 1234 reject_low 6 ALIGNMENT 24 Y12-17j17.p1k chr13 598 646 588610 588658 F 49 95.92 1234 reject_low 2 ALIGNMENT 0 Y12-17j17.p1k chr13 647 857 588658 588657 F 211 0.00 1234 reject_low 2 ALIGNMENT 0 Y12-17j17.p1k chr05 62 597 83163 83162 F 536 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-17j17.p1k chr02 597 62 72397 72396 C 536 0.00 1234 reject_low 4 ALIGNMENT 145 Y12-17j18.p1k chr12 646 25 96792 97413 C 622 74.76 1284 reject_low 2 ALIGNMENT 141 Y12-17j18.p1k chr01 646 26 140741 141361 C 621 74.56 1284 reject_low 3 ALIGNMENT 0 Y12-17j18.p1k chr01 827 647 140742 140741 C 181 0.00 1284 reject_low 3 ALIGNMENT 82 Y12-17j18.p1k chr04 25 646 44149 44776 F 622 72.19 1284 reject_low 4 ALIGNMENT 72 Y12-17j18.p1k chr10 646 369 520749 521023 C 278 76.62 1284 reject_low 6 ALIGNMENT 83 Y12-17j18.p1k chr02 645 287 85752 86113 C 359 75.21 1284 reject_low 5 ALIGNMENT 748 Y12-17j18.q1k chr14 859 18 766014 766849 C 842 97.39 1360 accept_chi 0 ALIGNMENT 931 Y12-17j18.p1k chr10 14 1037 381446 382462 F 1024 97.95 1284 accept_chi 1 ALIGNMENT 0 Y12-17j18.p1k chr02 286 62 86114 86113 C 225 0.00 1284 reject_low 5 ALIGNMENT 0 Y12-17j18.p1k chr10 368 62 521024 521023 C 307 0.00 1284 reject_low 6 ALIGNMENT 0 Y12-17j18.p1k chr10 827 647 520750 520749 C 181 0.00 1284 reject_low 6 ALIGNMENT 0 Y12-17j18.p1k chr02 827 646 85753 85752 C 182 0.00 1284 reject_low 5 ALIGNMENT 0 Y12-17j18.p1k chr04 647 827 44776 44775 F 181 0.00 1284 reject_low 4 ALIGNMENT 0 Y12-17j18.p1k chr12 827 647 96793 96792 C 181 0.00 1284 reject_low 2 ALIGNMENT 860 Y12-17j19.q1k chr15 10 1027 169258 170263 F 1018 96.37 1197 accept 0 ALIGNMENT 921 Y12-17j19.p1k chr15 1070 6 172780 173833 C 1065 97.18 1235 accept 0 ALIGNMENT 40 Y12-17j21.p1k chr11 689 384 63950 64251 C 306 85.95 1245 reject_low 1 ALIGNMENT 803 Y12-17j21.q1k chr11 30 961 59982 60901 F 932 96.89 1242 accept 0 ALIGNMENT 0 Y12-17j21.p1k chr11 383 62 64252 64251 C 322 0.00 1245 reject_low 1 ALIGNMENT 655 Y12-17j21.p1k chr11 892 5 63862 64726 C 888 96.17 1245 accept 0 ALIGNMENT 866 Y12-17j22.q1k chr12 985 26 456568 457515 C 960 97.92 1220 accept 0 ALIGNMENT 936 Y12-17j22.p1k chr12 23 1071 461838 462869 F 1049 97.62 1200 accept 1 ALIGNMENT 866 Y12-17j22.q1k chr12 985 26 465705 466652 C 960 97.92 1220 accept 1 ALIGNMENT 936 Y12-17j22.p1k chr12 23 1071 452701 453732 F 1049 97.62 1200 accept 0 ALIGNMENT 883 Y12-17j24.p1k chr12 21 1024 281343 282350 F 1004 96.81 1198 accept 0 ALIGNMENT 666 Y12-17j24.q1k chr12 697 9 286746 287434 C 689 99.27 1311 accept 0 ALIGNMENT 23 Y12-17j24.p1k chr11 76 53 576166 576189 C 24 100.00 1198 reject_low 1 ALIGNMENT 0 Y12-17j24.p1k chr11 700 77 576167 576166 C 624 0.00 1198 reject_low 1 ALIGNMENT 678 Y12-17k01.q1k chr07 1 753 715926 716680 F 753 97.88 1222 accept 0 ALIGNMENT 871 Y12-17k01.p1k chr07 1049 9 717798 718859 C 1041 95.87 1255 accept 0 ALIGNMENT 975 Y12-17k02.p1k chr10 1219 7 307626 308824 C 1213 95.22 1338 accept 0 ALIGNMENT 993 Y12-17k02.q1k chr10 1 1137 304592 305734 F 1137 97.01 1278 accept 0 ALIGNMENT 954 Y12-17k03.p1k chr04 1176 20 1404142 1405317 C 1157 96.28 1340 accept 0 ALIGNMENT 744 Y12-17k03.q1k chr04 50 919 1403021 1403887 F 870 96.55 1442 accept 0 ALIGNMENT 990 Y12-17k05.q1k chr12 1217 32 466409 467601 C 1186 95.19 1259 accept 1 ALIGNMENT 990 Y12-17k05.q1k chr12 1217 32 457272 458464 C 1186 95.19 1259 accept 0 ALIGNMENT 971 Y12-17k05.p1k chr12 19 1110 452902 453985 F 1092 97.34 1278 accept 0 ALIGNMENT 971 Y12-17k05.p1k chr12 19 1110 462039 463122 F 1092 97.34 1278 accept 1 ALIGNMENT 813 Y12-17k06.p1k chr03 3 1003 187937 188933 F 1001 95.80 1214 accept 0 ALIGNMENT 707 Y12-17k06.q1k chr03 810 11 192411 193205 C 800 97.50 1184 accept 0 ALIGNMENT 805 Y12-17k07.p1k chr16 40 1056 825646 826662 F 1017 94.49 1262 accept 0 ALIGNMENT 647 Y12-17k07.q1k chr16 723 4 829397 830116 C 720 98.47 1318 accept 0 ALIGNMENT 918 Y12-17k09.p1k chr15 16 1044 338663 339690 F 1029 97.57 1401 accept 0 ALIGNMENT 914 Y12-17k09.q1k chr15 1082 54 341570 342602 C 1029 96.89 1376 accept 0 ALIGNMENT 173 Y12-17k10.p1k chr11 369 14 198666 199022 C 356 83.99 1379 reject_low 1 ALIGNMENT 0 Y12-17k10.p1k chr11 773 370 198667 198666 C 404 0.00 1379 reject_low 1 ALIGNMENT 933 Y12-17k10.p1k chr13 12 1097 487730 488810 F 1086 97.05 1379 accept 0 ALIGNMENT 968 Y12-17k10.q1k chr13 1187 31 492493 493650 C 1157 95.51 1338 accept 0 ALIGNMENT 0 Y12-17k11.q1k chr07 803 62 541927 541926 C 742 0.00 1254 reject_low 8 ALIGNMENT 957 Y12-17k11.p1k chr05 13 1150 172887 174012 F 1138 96.05 1314 accept 0 ALIGNMENT 63 Y12-17k11.q1k chr16 804 877 210190 210262 F 74 95.95 1254 reject_low 11 ALIGNMENT 68 Y12-17k11.q1k chr10 797 878 115926 116006 F 82 95.12 1254 reject_low 5 ALIGNMENT 0 Y12-17k11.q1k chr09 795 62 197670 197669 C 734 0.00 1254 reject_low 14 ALIGNMENT 0 Y12-17k11.q1k chr07 62 793 401519 401518 F 732 0.00 1254 reject_low 2 ALIGNMENT 66 Y12-17k11.q1k chr05 803 882 487324 487402 F 80 95.00 1254 reject_low 3 ALIGNMENT 0 Y12-17k11.q1k chr13 803 62 290873 290872 C 742 0.00 1254 reject_low 13 ALIGNMENT 63 Y12-17k11.q1k chr07 877 804 328586 328658 C 74 95.95 1254 reject_low 10 ALIGNMENT 0 Y12-17k11.q1k chr16 62 803 210190 210189 F 742 0.00 1254 reject_low 11 ALIGNMENT 62 Y12-17k11.q1k chr12 877 808 797178 797246 C 70 97.14 1254 reject_low 12 ALIGNMENT 64 Y12-17k11.q1k chr11 804 878 141022 141095 F 75 96.00 1254 reject_low 9 ALIGNMENT 66 Y12-17k11.q1k chr03 796 878 82452 82533 F 83 93.98 1254 reject_low 6 ALIGNMENT 64 Y12-17k11.q1k chr07 878 804 541853 541926 C 75 96.00 1254 reject_low 8 ALIGNMENT 75 Y12-17k11.q1k chr05 885 794 354922 355012 C 92 94.57 1254 reject_low 1 ALIGNMENT 0 Y12-17k11.q1k chr03 62 795 82452 82451 F 734 0.00 1254 reject_low 6 ALIGNMENT 0 Y12-17k11.q1k chr09 802 62 370488 370487 C 741 0.00 1254 reject_low 7 ALIGNMENT 65 Y12-17k11.q1k chr09 878 803 370413 370487 C 76 96.05 1254 reject_low 7 ALIGNMENT 70 Y12-17k11.q1k chr07 794 877 401519 401601 F 84 95.24 1254 reject_low 2 ALIGNMENT 0 Y12-17k11.q1k chr11 62 803 141022 141021 F 742 0.00 1254 reject_low 9 ALIGNMENT 51 Y12-17k11.q1k chr09 878 796 197588 197669 C 83 87.95 1254 reject_low 14 ALIGNMENT 0 Y12-17k11.q1k chr05 793 62 355013 355012 C 732 0.00 1254 reject_low 1 ALIGNMENT 67 Y12-17k11.q1k chr02 878 795 645161 645243 C 84 94.05 1254 reject_low 4 ALIGNMENT 0 Y12-17k11.q1k chr02 794 62 645244 645243 C 733 0.00 1254 reject_low 4 ALIGNMENT 0 Y12-17k11.q1k chr12 807 62 797247 797246 C 746 0.00 1254 reject_low 12 ALIGNMENT 61 Y12-17k11.q1k chr13 878 804 290799 290872 C 75 94.67 1254 reject_low 13 ALIGNMENT 0 Y12-17k11.q1k chr10 62 796 115926 115925 F 735 0.00 1254 reject_low 5 ALIGNMENT 824 Y12-17k11.q1k chr05 1054 3 176918 177962 C 1052 94.11 1254 accept 0 ALIGNMENT 0 Y12-17k11.q1k chr07 803 62 328659 328658 C 742 0.00 1254 reject_low 10 ALIGNMENT 0 Y12-17k11.q1k chr05 62 802 487324 487323 F 741 0.00 1254 reject_low 3 ALIGNMENT 798 Y12-17k13.q1k chr02 1 893 706384 707269 F 893 97.98 1172 accept 0 ALIGNMENT 784 Y12-17k14.q1k chr11 4 917 633785 634688 F 914 96.83 1211 accept 0 ALIGNMENT 498 Y12-17k14.p1k chr11 649 63 637511 638094 C 587 96.42 1406 accept 0 ALIGNMENT 982 Y12-17k15.q1k chr04 33 1264 474603 475829 F 1232 95.54 1348 accept 0 ALIGNMENT 925 Y12-17k15.p1k chr04 1150 16 479003 480140 C 1135 95.59 1274 accept 0 ALIGNMENT 695 Y12-17k16.p1k chr04 249 1140 461222 462095 F 892 94.17 1381 accept 0 ALIGNMENT 827 Y12-17k16.q1k chr04 918 2 465557 466477 C 917 97.49 1224 accept 0 ALIGNMENT 585 Y12-17k17.q1k chr11 3 810 2038 2851 F 808 91.71 1229 reject_low 4 ALIGNMENT 0 Y12-17k17.q1k chr07 688 240 1080212 1080211 C 449 0.00 1229 reject_low 16 ALIGNMENT 0 Y12-17k17.q1k chr15 688 605 1082369 1082368 C 84 0.00 1229 reject_low 12 ALIGNMENT 454 Y12-17k17.q1k chr02 3 616 7832 8448 F 614 92.02 1229 reject_low 10 ALIGNMENT 262 Y12-17k17.q1k chr15 604 3 1082368 1082978 C 602 82.89 1229 reject_low 12 ALIGNMENT 185 Y12-17k17.q1k chr02 239 3 808950 809186 C 237 93.25 1229 reject_low 15 ALIGNMENT 0 Y12-17k17.q1k chr04 688 521 1522854 1522853 C 168 0.00 1229 reject_low 20 ALIGNMENT 160 Y12-17k17.q1k chr04 172 3 1523198 1523367 C 170 98.24 1229 reject_low 20 ALIGNMENT 136 Y12-17k17.q1k chr05 177 3 63693 63863 C 175 93.71 1229 reject_low 17 ALIGNMENT 0 Y12-17k17.q1k chr13 688 605 922176 922175 C 84 0.00 1229 reject_low 14 ALIGNMENT 0 Y12-17k17.q1k chr12 621 688 13929 13928 F 68 0.00 1229 reject_low 9 ALIGNMENT 71 Y12-17k17.q1k chr01 3 148 176880 177031 F 146 83.56 1229 reject_low 19 ALIGNMENT 0 Y12-17k17.q1k chr04 391 173 1522981 1523197 C 219 0.00 1229 reject_low 20 ALIGNMENT 0 Y12-17k17.q1k chr02 617 688 8448 8447 F 72 0.00 1229 reject_low 10 ALIGNMENT 623 Y12-17k17.q1k chr09 3 809 9020 9824 F 807 93.31 1229 reject_low 2 ALIGNMENT 0 Y12-17k17.q1k chr05 688 178 63694 63693 C 511 0.00 1229 reject_low 17 ALIGNMENT 583 Y12-17k17.q1k chr14 798 3 781256 782053 C 796 91.96 1229 reject_low 5 ALIGNMENT 24 Y12-17k17.q1k chr08 719 759 12887 12928 F 41 87.80 1229 reject_low 18 ALIGNMENT 247 Y12-17k17.q1k chr13 604 3 922175 922783 C 602 82.06 1229 reject_low 14 ALIGNMENT 572 Y12-17k17.q1k chr03 809 3 307125 307941 C 807 91.20 1229 reject_low 7 ALIGNMENT 185 Y12-17k17.q1k chr07 239 3 1080211 1080447 C 237 93.25 1229 reject_low 16 ALIGNMENT 24 Y12-17k17.q1k chr04 520 392 1522853 1522980 C 129 75.19 1229 reject_low 20 ALIGNMENT 0 Y12-17k17.q1k chr16 605 688 8773 8772 F 84 0.00 1229 reject_low 13 ALIGNMENT 364 Y12-17k17.q1k chr08 3 611 12148 12763 F 609 87.85 1229 reject_low 18 ALIGNMENT 534 Y12-17k17.q1k chr01 3 773 2034 2800 F 771 90.92 1229 reject_low 8 ALIGNMENT 0 Y12-17k17.q1k chr02 688 240 808951 808950 C 449 0.00 1229 reject_low 15 ALIGNMENT 718 Y12-17k17.q1k chr07 3 1062 6517 7574 F 1060 90.75 1229 ambiguous_tel 0 ALIGNMENT 262 Y12-17k17.q1k chr16 3 604 8163 8773 F 602 82.89 1229 reject_low 13 ALIGNMENT 623 Y12-17k17.q1k chr10 3 809 9003 9807 F 807 93.31 1229 reject_low 3 ALIGNMENT 698 Y12-17k17.q1k chr09 1062 3 433002 434069 C 1060 90.09 1229 ambiguous_tel 1 ALIGNMENT 0 Y12-17k17.q1k chr01 149 688 177031 177030 F 540 0.00 1229 reject_low 19 ALIGNMENT 0 Y12-17k17.q1k chr08 612 718 12764 12886 F 107 0.00 1229 reject_low 18 ALIGNMENT 497 Y12-17k17.q1k chr12 3 620 13310 13929 F 618 94.17 1229 reject_low 9 ALIGNMENT 362 Y12-17k17.q1k chr15 3 809 11775 12579 F 807 83.27 1229 reject_low 11 ALIGNMENT 573 Y12-17k17.q1k chr12 809 3 1062252 1063051 C 807 91.57 1229 reject_low 6 ALIGNMENT 0 Y12-17k18.p1k chr01 274 62 2180 2179 C 213 0.00 1261 reject_low 12 ALIGNMENT 194 Y12-17k18.p1k chr16 622 275 7967 8317 C 348 85.63 1261 reject_low 17 ALIGNMENT 220 Y12-17k18.p1k chr04 268 656 1523215 1523597 F 389 86.38 1261 reject_low 6 ALIGNMENT 217 Y12-17k18.p1k chr15 656 268 11545 11927 C 389 86.12 1261 reject_low 8 ALIGNMENT 0 Y12-17k18.p1k chr01 725 657 1805 1804 C 69 0.00 1261 reject_low 12 ALIGNMENT 0 Y12-17k18.p1k chr09 725 657 8791 8790 C 69 0.00 1261 reject_low 19 ALIGNMENT 0 Y12-17k18.p1k chr09 274 265 9166 9165 C 10 0.00 1261 reject_low 19 ALIGNMENT 222 Y12-17k18.p1k chr05 275 656 63718 64093 F 382 86.91 1261 reject_low 7 ALIGNMENT 0 Y12-17k18.p1k chr14 654 725 782280 782279 F 72 0.00 1261 reject_low 14 ALIGNMENT 249 Y12-17k18.p1k chr12 238 641 94699 95105 F 404 87.87 1261 reject_low 4 ALIGNMENT 0 Y12-17k18.p1k chr16 725 623 7968 7967 C 103 0.00 1261 reject_low 17 ALIGNMENT 0 Y12-17k18.p1k chr12 725 642 222702 222701 C 84 0.00 1261 reject_low 11 ALIGNMENT 0 Y12-17k18.p1k chr11 725 657 1809 1808 C 69 0.00 1261 reject_low 18 ALIGNMENT 0 Y12-17k18.p1k chr15 642 725 1083193 1083192 F 84 0.00 1261 reject_low 15 ALIGNMENT 198 Y12-17k18.p1k chr13 275 641 922629 922998 F 367 85.01 1261 reject_low 16 ALIGNMENT 0 Y12-17k18.p1k chr12 62 237 94699 94698 F 176 0.00 1261 reject_low 4 ALIGNMENT 0 Y12-17k18.p1k chr16 274 62 8318 8317 C 213 0.00 1261 reject_low 17 ALIGNMENT 226 Y12-17k18.p1k chr08 656 205 11918 12363 C 452 84.51 1261 reject_low 2 ALIGNMENT 214 Y12-17k18.p1k chr12 641 284 222701 223061 C 358 86.87 1261 reject_low 11 ALIGNMENT 0 Y12-17k18.p1k chr15 267 62 11928 11927 C 206 0.00 1261 reject_low 8 ALIGNMENT 0 Y12-17k18.p1k chr01 725 656 176652 176651 C 70 0.00 1261 reject_low 1 ALIGNMENT 207 Y12-17k18.p1k chr14 275 653 781908 782280 F 379 85.75 1261 reject_low 14 ALIGNMENT 0 Y12-17k18.p1k chr10 725 657 8774 8773 C 69 0.00 1261 reject_low 20 ALIGNMENT 0 Y12-17k18.p1k chr09 62 267 433908 433907 F 206 0.00 1261 reject_low 10 ALIGNMENT 221 Y12-17k18.p1k chr12 275 653 1062906 1063278 F 379 87.07 1261 reject_low 9 ALIGNMENT 0 Y12-17k18.p1k chr02 679 725 809438 809437 F 47 0.00 1261 reject_low 3 ALIGNMENT 231 Y12-17k18.p1k chr11 656 275 1808 2192 C 382 87.17 1261 reject_low 18 ALIGNMENT 0 Y12-17k18.p1k chr07 725 657 6288 6287 C 69 0.00 1261 reject_low 5 ALIGNMENT 0 Y12-17k18.p1k chr14 62 274 781908 781907 F 213 0.00 1261 reject_low 14 ALIGNMENT 0 Y12-17k18.p1k chr11 221 62 2236 2235 C 160 0.00 1261 reject_low 18 ALIGNMENT 0 Y12-17k18.p1k chr07 267 62 6670 6669 C 206 0.00 1261 reject_low 5 ALIGNMENT 0 Y12-17k18.p1k chr12 274 62 13456 13455 C 213 0.00 1261 reject_low 13 ALIGNMENT 0 Y12-17k18.p1k chr02 62 267 809034 809033 F 206 0.00 1261 reject_low 3 ALIGNMENT 0 Y12-17k18.p1k chr12 725 654 13084 13083 C 72 0.00 1261 reject_low 13 ALIGNMENT 437 Y12-17k18.p1k chr01 655 29 176651 177275 C 627 90.75 1261 reject_low 1 ALIGNMENT 210 Y12-17k18.p1k chr09 656 275 8790 9165 C 382 85.86 1261 reject_low 19 ALIGNMENT 0 Y12-17k18.p1k chr04 62 267 1523215 1523214 F 206 0.00 1261 reject_low 6 ALIGNMENT 0 Y12-17k18.p1k chr05 62 274 63718 63717 F 213 0.00 1261 reject_low 7 ALIGNMENT 229 Y12-17k18.p1k chr07 656 268 6287 6669 C 389 87.15 1261 reject_low 5 ALIGNMENT 214 Y12-17k18.p1k chr02 268 678 809034 809438 F 411 84.91 1261 reject_low 3 ALIGNMENT 0 Y12-17k18.p1k chr08 725 657 11919 11918 C 69 0.00 1261 reject_low 2 ALIGNMENT 0 Y12-17k18.p1k chr12 283 62 223062 223061 C 222 0.00 1261 reject_low 11 ALIGNMENT 0 Y12-17k18.p1k chr15 62 274 1082824 1082823 F 213 0.00 1261 reject_low 15 ALIGNMENT 746 Y12-17k18.p1k chr06 843 1 99047 99877 C 843 97.75 1261 accept 0 ALIGNMENT 210 Y12-17k18.p1k chr10 656 275 8773 9148 C 382 85.86 1261 reject_low 20 ALIGNMENT 22 Y12-17k18.p1k chr09 264 205 9166 9226 C 60 81.67 1261 reject_low 19 ALIGNMENT 0 Y12-17k18.p1k chr10 274 265 9149 9148 C 10 0.00 1261 reject_low 20 ALIGNMENT 0 Y12-17k18.p1k chr05 657 725 64093 64092 F 69 0.00 1261 reject_low 7 ALIGNMENT 0 Y12-17k18.p1k chr11 274 265 2193 2192 C 10 0.00 1261 reject_low 18 ALIGNMENT 0 Y12-17k18.p1k chr09 642 725 434284 434283 F 84 0.00 1261 reject_low 10 ALIGNMENT 201 Y12-17k18.p1k chr15 275 641 1082824 1083193 F 367 85.29 1261 reject_low 15 ALIGNMENT 0 Y12-17k18.p1k chr04 657 725 1523597 1523596 F 69 0.00 1261 reject_low 6 ALIGNMENT 0 Y12-17k18.p1k chr12 654 725 1063278 1063277 F 72 0.00 1261 reject_low 9 ALIGNMENT 0 Y12-17k18.p1k chr15 725 657 11546 11545 C 69 0.00 1261 reject_low 8 ALIGNMENT 809 Y12-17k18.q1k chr06 6 928 93588 94495 F 923 97.18 1286 accept 0 ALIGNMENT 22 Y12-17k18.p1k chr11 264 222 2193 2235 C 43 86.05 1261 reject_low 18 ALIGNMENT 207 Y12-17k18.p1k chr12 653 275 13083 13455 C 379 85.75 1261 reject_low 13 ALIGNMENT 22 Y12-17k18.p1k chr10 264 205 9149 9209 C 60 81.67 1261 reject_low 20 ALIGNMENT 0 Y12-17k18.p1k chr12 642 725 95105 95104 F 84 0.00 1261 reject_low 4 ALIGNMENT 216 Y12-17k18.p1k chr09 268 641 433908 434284 F 374 86.36 1261 reject_low 10 ALIGNMENT 0 Y12-17k18.p1k chr13 642 725 922998 922997 F 84 0.00 1261 reject_low 16 ALIGNMENT 0 Y12-17k18.p1k chr12 62 274 1062906 1062905 F 213 0.00 1261 reject_low 9 ALIGNMENT 0 Y12-17k18.p1k chr13 62 274 922629 922628 F 213 0.00 1261 reject_low 16 ALIGNMENT 0 Y12-17k18.p1k chr10 204 62 9210 9209 C 143 0.00 1261 reject_low 20 ALIGNMENT 0 Y12-17k18.p1k chr09 204 62 9227 9226 C 143 0.00 1261 reject_low 19 ALIGNMENT 0 Y12-17k18.p1k chr08 204 62 12364 12363 C 143 0.00 1261 reject_low 2 ALIGNMENT 209 Y12-17k18.p1k chr01 656 275 1804 2179 C 382 85.86 1261 reject_low 12 ALIGNMENT 823 Y12-17k19.q1k chr13 932 2 675066 675995 C 931 97.10 1178 accept 0 ALIGNMENT 837 Y12-17k19.p1k chr13 7 1054 670921 671952 F 1048 95.99 1206 accept 0 ALIGNMENT 1032 Y12-17k20.p1k chr11 1203 14 507959 509145 C 1190 96.22 1244 accept 0 ALIGNMENT 956 Y12-17k20.q1k chr11 31 1124 504801 505885 F 1094 96.98 1256 accept 0 ALIGNMENT 531 Y12-17k21.p1k chr15 1043 400 577002 577629 C 644 95.81 1217 reject_low 1 ALIGNMENT 0 Y12-17k21.p1k chr15 399 62 577630 577629 C 338 0.00 1217 reject_low 1 ALIGNMENT 883 Y12-17k21.p1k chr04 1043 17 1245124 1246137 C 1027 96.88 1217 accept 0 ALIGNMENT 858 Y12-17k21.q1k chr04 32 1036 1240149 1241136 F 1005 97.61 1261 accept 0 ALIGNMENT 0 Y12-17k22.p1k chr07 282 849 828801 828800 F 568 0.00 1220 reject_low 6 ALIGNMENT 0 Y12-17k22.p1k chr03 393 849 151771 151770 F 457 0.00 1220 reject_low 27 ALIGNMENT 0 Y12-17k22.p1k chr04 345 62 434543 434542 C 284 0.00 1220 reject_low 25 ALIGNMENT 0 Y12-17k22.p1k chr10 346 62 354881 354880 C 285 0.00 1220 reject_low 31 ALIGNMENT 0 Y12-17k22.p1k chr16 62 346 850214 850213 F 285 0.00 1220 reject_low 16 ALIGNMENT 0 Y12-17k22.p1k chr13 849 447 372713 372712 C 403 0.00 1220 reject_low 12 ALIGNMENT 40 Y12-17k22.p1k chr13 441 347 357025 357126 C 95 83.16 1220 reject_low 23 ALIGNMENT 75 Y12-17k22.p1k chr13 204 281 131821 131898 F 78 98.72 1220 reject_low 10 ALIGNMENT 0 Y12-17k22.p1k chr10 849 442 354472 354471 C 408 0.00 1220 reject_low 33 ALIGNMENT 0 Y12-17k22.p1k chr13 346 62 357127 357126 C 285 0.00 1220 reject_low 23 ALIGNMENT 0 Y12-17k22.p1k chr10 348 282 354571 355287 C 67 0.00 1220 reject_low 33 ALIGNMENT 31 Y12-17k22.p1k chr03 441 347 124152 124253 C 95 80.00 1220 reject_low 30 ALIGNMENT 0 Y12-17k22.p1k chr16 849 442 804663 804662 C 408 0.00 1220 reject_low 28 ALIGNMENT 0 Y12-17k22.p1k chr03 346 62 124254 124253 C 285 0.00 1220 reject_low 30 ALIGNMENT 38 Y12-17k22.p1k chr04 441 346 434441 434542 C 96 82.29 1220 reject_low 25 ALIGNMENT 75 Y12-17k22.p1k chr02 281 204 405870 405947 C 78 98.72 1220 reject_low 7 ALIGNMENT 0 Y12-17k22.p1k chr05 849 447 498096 498095 C 403 0.00 1220 reject_low 18 ALIGNMENT 75 Y12-17k22.p1k chr10 204 281 374418 374495 F 78 98.72 1220 reject_low 9 ALIGNMENT 43 Y12-17k22.p1k chr03 347 441 82913 83014 F 95 84.21 1220 reject_low 19 ALIGNMENT 44 Y12-17k22.p1k chr15 347 446 117917 118023 F 100 84.00 1220 reject_low 14 ALIGNMENT 0 Y12-17k22.p1k chr04 849 442 434442 434441 C 408 0.00 1220 reject_low 25 ALIGNMENT 0 Y12-17k22.p1k chr07 62 201 828722 828721 F 140 0.00 1220 reject_low 6 ALIGNMENT 0 Y12-17k22.p1k chr13 282 849 131898 131897 F 568 0.00 1220 reject_low 10 ALIGNMENT 0 Y12-17k22.p1k chr04 62 346 1095977 1095976 F 285 0.00 1220 reject_low 11 ALIGNMENT 0 Y12-17k22.p1k chr03 62 341 149680 149679 F 280 0.00 1220 reject_low 17 ALIGNMENT 0 Y12-17k22.p1k chr16 346 62 804764 804763 C 285 0.00 1220 reject_low 28 ALIGNMENT 44 Y12-17k22.p1k chr04 347 446 1095977 1096083 F 100 84.00 1220 reject_low 11 ALIGNMENT 0 Y12-17k22.p1k chr10 282 849 374495 374494 F 568 0.00 1220 reject_low 9 ALIGNMENT 0 Y12-17k22.p1k chr04 849 282 568878 568877 C 568 0.00 1220 reject_low 8 ALIGNMENT 43 Y12-17k22.p1k chr16 441 347 850646 850747 C 95 84.21 1220 reject_low 21 ALIGNMENT 0 Y12-17k22.p1k chr13 346 62 372819 372818 C 285 0.00 1220 reject_low 12 ALIGNMENT 0 Y12-17k22.p1k chr16 849 442 810247 810246 C 408 0.00 1220 reject_low 29 ALIGNMENT 37 Y12-17k22.p1k chr03 441 347 168616 168717 C 95 82.11 1220 reject_low 26 ALIGNMENT 77 Y12-17k22.p1k chr07 281 202 405471 405550 C 80 98.75 1220 reject_low 4 ALIGNMENT 33 Y12-17k22.p1k chr16 342 446 804533 804639 F 105 81.90 1220 reject_low 22 ALIGNMENT 44 Y12-17k22.p1k chr16 347 446 850214 850320 F 100 84.00 1220 reject_low 16 ALIGNMENT 0 Y12-17k22.p1k chr05 849 280 138667 138666 C 570 0.00 1220 reject_low 3 ALIGNMENT 40 Y12-17k22.p1k chr13 441 347 362607 362708 C 95 83.16 1220 reject_low 24 ALIGNMENT 0 Y12-17k22.p1k chr13 346 62 362709 362708 C 285 0.00 1220 reject_low 24 ALIGNMENT 0 Y12-17k22.p1k chr13 849 442 357026 357025 C 408 0.00 1220 reject_low 23 ALIGNMENT 0 Y12-17k22.p1k chr03 62 346 82913 82912 F 285 0.00 1220 reject_low 19 ALIGNMENT 44 Y12-17k22.p1k chr16 347 446 844623 844729 F 100 84.00 1220 reject_low 15 ALIGNMENT 0 Y12-17k22.p1k chr13 346 62 378407 378406 C 285 0.00 1220 reject_low 13 ALIGNMENT 0 Y12-17k22.p1k chr13 62 203 131821 131820 F 142 0.00 1220 reject_low 10 ALIGNMENT 75 Y12-17k22.p1k chr04 281 204 568877 568954 C 78 98.72 1220 reject_low 8 ALIGNMENT 0 Y12-17k22.p1k chr12 849 442 475997 475996 C 408 0.00 1220 reject_low 20 ALIGNMENT 81 Y12-17k22.p1k chr11 201 281 162485 162565 F 81 100.00 1220 reject_low 2 ALIGNMENT 0 Y12-17k22.p1k chr10 203 62 355366 355365 C 142 0.00 1220 reject_low 33 ALIGNMENT 78 Y12-17k22.p1k chr05 279 202 138666 138743 C 78 100.00 1220 reject_low 3 ALIGNMENT 0 Y12-17k22.p1k chr15 447 849 118023 118022 F 403 0.00 1220 reject_low 14 ALIGNMENT 0 Y12-17k22.p1k chr03 849 442 124153 124152 C 408 0.00 1220 reject_low 30 ALIGNMENT 0 Y12-17k22.p1k chr16 62 341 804533 804532 F 280 0.00 1220 reject_low 22 ALIGNMENT 0 Y12-17k22.p1k chr04 447 849 1096083 1096082 F 403 0.00 1220 reject_low 11 ALIGNMENT 34 Y12-17k22.p1k chr16 441 347 804662 804763 C 95 81.05 1220 reject_low 28 ALIGNMENT 0 Y12-17k22.p1k chr03 347 62 83177 83176 C 286 0.00 1220 reject_low 32 ALIGNMENT 0 Y12-17k22.p1k chr16 346 62 850748 850747 C 285 0.00 1220 reject_low 21 ALIGNMENT 0 Y12-17k22.p1k chr15 62 346 117917 117916 F 285 0.00 1220 reject_low 14 ALIGNMENT 0 Y12-17k22.p1k chr16 447 849 844729 844728 F 403 0.00 1220 reject_low 15 ALIGNMENT 0 Y12-17k22.p1k chr02 203 62 405948 405947 C 142 0.00 1220 reject_low 7 ALIGNMENT 0 Y12-17k22.p1k chr16 849 442 850647 850646 C 408 0.00 1220 reject_low 21 ALIGNMENT 0 Y12-17k22.p1k chr13 849 442 362608 362607 C 408 0.00 1220 reject_low 24 ALIGNMENT 44 Y12-17k22.p1k chr13 446 347 372712 372818 C 100 84.00 1220 reject_low 12 ALIGNMENT 0 Y12-17k22.p1k chr07 849 282 736344 736343 C 568 0.00 1220 reject_low 5 ALIGNMENT 0 Y12-17k22.p1k chr03 445 849 149789 149788 F 405 0.00 1220 reject_low 17 ALIGNMENT 0 Y12-17k22.p1k chr12 346 62 476098 476097 C 285 0.00 1220 reject_low 20 ALIGNMENT 0 Y12-17k22.p1k chr07 201 62 736423 736422 C 140 0.00 1220 reject_low 5 ALIGNMENT 0 Y12-17k22.p1k chr16 447 849 850320 850319 F 403 0.00 1220 reject_low 16 ALIGNMENT 0 Y12-17k22.p1k chr03 442 849 83014 83013 F 408 0.00 1220 reject_low 19 ALIGNMENT 33 Y12-17k22.p1k chr10 392 347 354835 354880 C 46 91.30 1220 reject_low 31 ALIGNMENT 0 Y12-17k22.p1k chr16 346 62 810348 810347 C 285 0.00 1220 reject_low 29 ALIGNMENT 38 Y12-17k22.p1k chr03 342 444 149680 149789 F 103 81.55 1220 reject_low 17 ALIGNMENT 0 Y12-17k22.p1k chr10 849 393 354836 354835 C 457 0.00 1220 reject_low 31 ALIGNMENT 709 Y12-17k22.q1k chr16 7 856 155545 156379 F 850 96.59 1286 accept_chi 1 ALIGNMENT 77 Y12-17k22.p1k chr07 281 202 736343 736422 C 80 98.75 1220 reject_low 5 ALIGNMENT 0 Y12-17k22.p1k chr16 62 346 844623 844622 F 285 0.00 1220 reject_low 15 ALIGNMENT 0 Y12-17k22.p1k chr11 62 200 162485 162484 F 139 0.00 1220 reject_low 2 ALIGNMENT 0 Y12-17k22.p1k chr10 62 203 374418 374417 F 142 0.00 1220 reject_low 9 ALIGNMENT 0 Y12-17k22.p1k chr13 849 447 378301 378300 C 403 0.00 1220 reject_low 13 ALIGNMENT 966 Y12-17k22.p1k chr13 14 1124 747699 748797 F 1111 97.57 1220 accept_chi 0 ALIGNMENT 0 Y12-17k22.p1k chr03 62 346 151726 151725 F 285 0.00 1220 reject_low 27 ALIGNMENT 0 Y12-17k22.p1k chr04 203 62 568955 568954 C 142 0.00 1220 reject_low 8 ALIGNMENT 0 Y12-17k22.p1k chr03 849 442 168617 168616 C 408 0.00 1220 reject_low 26 ALIGNMENT 0 Y12-17k22.p1k chr07 201 62 405551 405550 C 140 0.00 1220 reject_low 4 ALIGNMENT 0 Y12-17k22.p1k chr03 849 442 83076 83075 C 408 0.00 1220 reject_low 32 ALIGNMENT 0 Y12-17k22.p1k chr05 201 62 138744 138743 C 140 0.00 1220 reject_low 3 ALIGNMENT 75 Y12-17k22.p1k chr10 281 204 355288 355365 C 78 98.72 1220 reject_low 33 ALIGNMENT 0 Y12-17k22.p1k chr05 346 62 498202 498201 C 285 0.00 1220 reject_low 18 ALIGNMENT 28 Y12-17k22.p1k chr03 441 348 83075 83176 C 94 79.79 1220 reject_low 32 ALIGNMENT 39 Y12-17k22.p1k chr03 347 392 151726 151771 F 46 95.65 1220 reject_low 27 ALIGNMENT 44 Y12-17k22.p1k chr13 446 347 378300 378406 C 100 84.00 1220 reject_low 13 ALIGNMENT 34 Y12-17k22.p1k chr16 441 347 810246 810347 C 95 81.05 1220 reject_low 29 ALIGNMENT 0 Y12-17k22.p1k chr03 346 62 168718 168717 C 285 0.00 1220 reject_low 26 ALIGNMENT 0 Y12-17k22.p1k chr11 282 849 162565 162564 F 568 0.00 1220 reject_low 2 ALIGNMENT 0 Y12-17k22.p1k chr16 447 849 804639 804638 F 403 0.00 1220 reject_low 22 ALIGNMENT 0 Y12-17k22.p1k chr02 849 282 405871 405870 C 568 0.00 1220 reject_low 7 ALIGNMENT 0 Y12-17k22.p1k chr07 849 282 405472 405471 C 568 0.00 1220 reject_low 4 ALIGNMENT 41 Y12-17k22.p1k chr05 446 347 498095 498201 C 100 83.00 1220 reject_low 18 ALIGNMENT 35 Y12-17k22.p1k chr10 441 349 354471 354570 C 93 81.72 1220 reject_low 33 ALIGNMENT 77 Y12-17k22.p1k chr07 202 281 828722 828801 F 80 98.75 1220 reject_low 6 ALIGNMENT 43 Y12-17k22.p1k chr12 441 347 475996 476097 C 95 84.21 1220 reject_low 20 ALIGNMENT 925 Y12-17k24.p1k chr10 16 1150 509279 510425 F 1135 95.86 1202 accept 0 ALIGNMENT 891 Y12-17k24.q1k chr10 1001 24 514669 515640 C 978 98.57 1251 accept 0 ALIGNMENT 126 Y12-17l01.p1k chr12 1222 907 667706 668018 C 316 83.23 1357 reject_bad_break 0 ALIGNMENT 807 Y12-17l01.p1k chr12 900 18 667995 668877 C 883 98.64 1357 reject_bad_break 0 ALIGNMENT 930 Y12-17l01.q1k chr12 27 1200 664735 665906 F 1174 94.29 1350 reject_bad_break 0 ALIGNMENT 0 Y12-17l01.p1k chr12 906 901 668019 667994 C 6 0.00 1357 reject_bad_break 0 ALIGNMENT 0 Y12-17l02.p1k chr03 655 345 13692 13691 C 311 0.00 1529 reject_low 2 ALIGNMENT 270 Y12-17l02.q1k chr03 485 918 11509 11938 F 434 89.40 1404 reject_low 2 ALIGNMENT 0 Y12-17l02.p1k chr03 655 345 200847 200846 C 311 0.00 1529 accept 0 ALIGNMENT 0 Y12-17l02.q1k chr03 137 484 11509 11508 F 348 0.00 1404 reject_low 2 ALIGNMENT 188 Y12-17l02.p1k chr03 344 105 13691 13926 C 240 95.00 1529 reject_low 2 ALIGNMENT 587 Y12-17l02.p1k chr03 876 105 293854 294610 C 772 94.69 1529 reject_low 1 ALIGNMENT 634 Y12-17l02.q1k chr03 61 918 198248 199095 F 858 93.12 1404 accept 0 ALIGNMENT 188 Y12-17l02.p1k chr03 344 105 200846 201081 C 240 95.00 1529 accept 0 ALIGNMENT 982 Y12-17l03.p1k chr13 1160 14 644840 646006 C 1147 95.99 1388 accept 0 ALIGNMENT 898 Y12-17l03.q1k chr13 31 1082 641266 642334 F 1052 96.67 1316 accept 0 ALIGNMENT 23 Y12-17l04.q1k chr12 61 111 701210 701260 F 51 94.12 1368 reject_low 2 ALIGNMENT 0 Y12-17l04.q1k chr12 112 796 701260 701259 F 685 0.00 1368 reject_low 2 ALIGNMENT 0 Y12-17l04.q1k chr16 112 796 650548 650547 F 685 0.00 1368 reject_low 5 ALIGNMENT 850 Y12-17l04.p1k chr07 30 1124 462163 463254 F 1095 93.97 1395 accept 0 ALIGNMENT 0 Y12-17l04.q1k chr04 796 114 1290967 1290966 C 683 0.00 1368 reject_low 3 ALIGNMENT 21 Y12-17l04.q1k chr16 68 111 650505 650548 F 44 97.73 1368 reject_low 5 ALIGNMENT 958 Y12-17l04.q1k chr07 1146 32 466666 467785 C 1115 96.86 1368 accept 0 ALIGNMENT 0 Y12-17l04.q1k chr05 796 114 142946 142945 C 683 0.00 1368 reject_low 4 ALIGNMENT 27 Y12-17l04.q1k chr04 45 111 390446 390512 F 67 88.06 1368 reject_low 1 ALIGNMENT 22 Y12-17l04.q1k chr04 113 68 1290966 1291011 C 46 97.83 1368 reject_low 3 ALIGNMENT 22 Y12-17l04.q1k chr05 113 69 142945 142989 C 45 97.78 1368 reject_low 4 ALIGNMENT 0 Y12-17l04.q1k chr04 112 796 390512 390511 F 685 0.00 1368 reject_low 1 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344799 344813 C 3 0.00 1176 reject_low 1 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344871 344885 C 3 0.00 1176 reject_low 7 ALIGNMENT 24 Y12-17l05.q1k chr15 533 493 345010 345050 C 41 87.80 1176 reject_low 6 ALIGNMENT 0 Y12-17l05.q1k chr15 492 62 345051 345050 C 431 0.00 1176 reject_low 6 ALIGNMENT 169 Y12-17l05.q1k chr15 489 218 344886 345160 C 272 88.24 1176 reject_low 7 ALIGNMENT 0 Y12-17l05.q1k chr15 680 534 345011 345010 C 147 0.00 1176 reject_low 6 ALIGNMENT 363 Y12-17l05.q1k chr15 489 3 344814 345302 C 487 92.81 1176 reject_low 1 ALIGNMENT 0 Y12-17l05.q1k chr15 680 534 345047 345046 C 147 0.00 1176 reject_low 8 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344943 345029 C 3 0.00 1176 reject_low 11 ALIGNMENT 25 Y12-17l05.q1k chr15 240 191 344742 344791 C 50 84.00 1176 reject_low 13 ALIGNMENT 0 Y12-17l05.q1k chr15 680 544 344893 344892 C 137 0.00 1176 reject_low 10,11,12 ALIGNMENT 20 Y12-17l05.q1k chr15 544 493 344747 344798 C 52 80.77 1176 reject_low 1,5 ALIGNMENT 0 Y12-17l05.q1k chr15 492 62 345087 345086 C 431 0.00 1176 reject_low 8 ALIGNMENT 0 Y12-17l05.q1k chr15 226 62 345116 345115 C 165 0.00 1176 reject_low 9 ALIGNMENT 20 Y12-17l05.q1k chr15 303 265 344688 344726 C 39 84.62 1176 reject_low 13 ALIGNMENT 0 Y12-17l05.q1k chr15 190 62 345008 345007 C 129 0.00 1176 reject_low 3 ALIGNMENT 190 Y12-17l05.q1k chr15 489 191 344778 345079 C 299 88.63 1176 reject_low 5 ALIGNMENT 0 Y12-17l05.q1k chr15 680 304 344689 344688 C 377 0.00 1176 reject_low 13 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344871 344849 C 3 0.00 1176 reject_low 9 ALIGNMENT 0 Y12-17l05.q1k chr15 270 62 344961 344960 C 209 0.00 1176 reject_low 2 ALIGNMENT 24 Y12-17l05.q1k chr15 533 493 344830 344870 C 41 87.80 1176 reject_low 7,9 ALIGNMENT 0 Y12-17l05.q1k chr15 407 62 345148 345147 C 346 0.00 1176 reject_low 12 ALIGNMENT 351 Y12-17l05.q1k chr15 681 271 344550 344960 C 411 95.62 1176 reject_low 2 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344943 344957 C 3 0.00 1176 reject_low 10 ALIGNMENT 0 Y12-17l05.q1k chr15 680 534 344831 344830 C 147 0.00 1176 reject_low 7,9 ALIGNMENT 41 Y12-17l05.q1k chr15 489 408 345066 345147 C 82 84.15 1176 reject_low 12 ALIGNMENT 0 Y12-17l05.q1k chr15 680 454 344743 344742 C 227 0.00 1176 reject_low 3 ALIGNMENT 0 Y12-17l05.q1k chr15 190 62 345080 345079 C 129 0.00 1176 reject_low 5 ALIGNMENT 0 Y12-17l05.q1k chr15 331 62 345116 345115 C 270 0.00 1176 reject_low 10 ALIGNMENT 850 Y12-17l05.p1k chr15 1 992 341217 342207 F 992 95.97 1242 accept 0 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344799 344777 C 3 0.00 1176 reject_low 5 ALIGNMENT 119 Y12-17l05.q1k chr15 381 174 344742 344952 C 208 86.54 1176 reject_low 4 ALIGNMENT 158 Y12-17l05.q1k chr15 489 227 344850 345115 C 263 87.45 1176 reject_low 9 ALIGNMENT 163 Y12-17l05.q1k chr15 453 191 344742 345007 C 263 88.21 1176 reject_low 3 ALIGNMENT 0 Y12-17l05.q1k chr15 173 62 344953 344952 C 112 0.00 1176 reject_low 4 ALIGNMENT 0 Y12-17l05.q1k chr15 217 62 345161 345160 C 156 0.00 1176 reject_low 7 ALIGNMENT 25 Y12-17l05.q1k chr15 543 493 344892 344942 C 51 84.31 1176 reject_low 10,11,12 ALIGNMENT 0 Y12-17l05.q1k chr15 173 62 345061 345060 C 112 0.00 1176 accept 0 ALIGNMENT 0 Y12-17l05.q1k chr15 680 382 344743 344742 C 299 0.00 1176 reject_low 4 ALIGNMENT 0 Y12-17l05.q1k chr15 492 490 344943 345065 C 3 0.00 1176 reject_low 12 ALIGNMENT 0 Y12-17l05.q1k chr15 190 62 344792 344791 C 129 0.00 1176 reject_low 13 ALIGNMENT 116 Y12-17l05.q1k chr15 489 332 344958 345115 C 158 91.77 1176 reject_low 10 ALIGNMENT 0 Y12-17l05.q1k chr15 264 241 344727 344741 C 24 0.00 1176 reject_low 13 ALIGNMENT 0 Y12-17l05.q1k chr15 680 545 344748 344747 C 136 0.00 1176 reject_low 1,5 ALIGNMENT 21 Y12-17l05.q1k chr15 533 493 345046 345086 C 41 85.37 1176 reject_low 8 ALIGNMENT 606 Y12-17l05.q1k chr15 1060 174 344166 345060 C 887 90.19 1176 accept 0 ALIGNMENT 54 Y12-17l05.q1k chr15 489 404 345030 345115 C 86 88.37 1176 reject_low 11 ALIGNMENT 0 Y12-17l05.q1k chr15 403 62 345116 345115 C 342 0.00 1176 reject_low 11 ALIGNMENT 129 Y12-17l06.p1k chr15 216 814 773267 773864 F 599 74.79 1279 reject_low 1 ALIGNMENT 967 Y12-17l06.p1k chr16 1254 6 287370 288600 C 1249 94.40 1279 accept 0 ALIGNMENT 983 Y12-17l06.q1k chr16 31 1193 284500 285661 F 1163 95.70 1259 accept 0 ALIGNMENT 0 Y12-17l06.p1k chr15 62 215 773267 773266 F 154 0.00 1279 reject_low 1 ALIGNMENT 827 Y12-17l07.p1k chr15 2 1025 82936 83954 F 1024 95.12 1218 accept 0 ALIGNMENT 810 Y12-17l07.q1k chr15 929 8 85273 86188 C 922 97.40 1294 accept 0 ALIGNMENT 972 Y12-17l08.p1k chr13 1161 4 207901 209065 C 1158 95.25 1234 accept 0 ALIGNMENT 897 Y12-17l08.q1k chr13 29 1130 204078 205182 F 1102 95.10 1258 accept 0 ALIGNMENT 905 Y12-17l09.p1k chr15 6 1178 157677 158833 F 1173 94.29 1339 accept 0 ALIGNMENT 157 Y12-17l09.q1k chr15 232 1 160711 160954 C 232 91.38 446 accept 0 ALIGNMENT 0 Y12-17l10.p1k chr12 337 697 490543 490542 F 361 0.00 1326 reject_low 2 ALIGNMENT 943 Y12-17l10.p1k chr12 1 1234 461376 462611 F 1234 93.11 1326 accept 1 ALIGNMENT 964 Y12-17l10.q1k chr12 1154 33 457068 458213 C 1122 96.08 1304 accept 0 ALIGNMENT 325 Y12-17l10.p1k chr12 1 336 490207 490543 F 336 99.11 1326 reject_low 2 ALIGNMENT 943 Y12-17l10.p1k chr12 1 1234 452239 453474 F 1234 93.11 1326 accept 0 ALIGNMENT 964 Y12-17l10.q1k chr12 1154 33 466205 467350 C 1122 96.08 1304 accept 1 ALIGNMENT 1014 Y12-17l12.p1k chr15 1 1159 861079 862243 F 1159 96.38 1328 accept 0 ALIGNMENT 608 Y12-17l12.q1k chr15 750 51 864834 865526 C 700 97.14 1709 accept 0 ALIGNMENT 664 Y12-17l13.p1k chr07 913 36 495674 496537 C 878 94.31 1336 accept 0 ALIGNMENT 877 Y12-17l13.q1k chr07 2 1155 491102 492236 F 1154 94.11 1169 accept 0 ALIGNMENT 432 Y12-17l15.p1k chr12 653 111 457067 457598 C 543 94.66 1660 accept 0 ALIGNMENT 432 Y12-17l15.p1k chr12 653 111 466204 466735 C 543 94.66 1660 accept 1 ALIGNMENT 858 Y12-17l15.q1k chr12 1 1106 463492 464606 F 1106 93.76 1272 accept 1 ALIGNMENT 858 Y12-17l15.q1k chr12 1 1106 454355 455469 F 1106 93.76 1272 accept 0 ALIGNMENT 175 Y12-17l16.p1k vc_5 944 479 4574 5023 C 466 82.40 1240 reject_low 6 ALIGNMENT 175 Y12-17l16.p1k vc_2 944 479 1654 2103 C 466 82.40 1240 reject_low 4 ALIGNMENT 0 Y12-17l16.p1k vc_7 137 478 13564 13563 F 342 0.00 1240 reject_low 2 ALIGNMENT 175 Y12-17l16.p1k vc_1 944 479 1654 2103 C 466 82.40 1240 reject_low 3 ALIGNMENT 0 Y12-17l16.p1k vc_1 478 137 2104 2103 C 342 0.00 1240 reject_low 3 ALIGNMENT 23 Y12-17l16.p1k vc_1 508 479 2441 2470 C 30 93.33 1240 reject_low 14 ALIGNMENT 0 Y12-17l16.p1k vc_3 478 137 2471 2470 C 342 0.00 1240 reject_low 15 ALIGNMENT 0 Y12-17l16.p1k vc_7 137 478 102 101 F 342 0.00 1240 reject_low 1 ALIGNMENT 0 Y12-17l16.p1k vc_4 137 478 5873 5872 F 342 0.00 1240 reject_low 7 ALIGNMENT 0 Y12-17l16.p1k vc_5 137 457 2379 2378 F 321 0.00 1240 reject_low 13 ALIGNMENT 0 Y12-17l16.p1k vc_2 478 137 2104 2103 C 342 0.00 1240 reject_low 4 ALIGNMENT 36 Y12-17l16.p1k vc_4 477 442 5812 5847 C 36 100.00 1240 reject_low 11 ALIGNMENT 36 Y12-17l16.p1k vc_2 442 477 2129 2164 F 36 100.00 1240 reject_low 9 ALIGNMENT 176 Y12-17l16.p1k vc_7 479 944 102 551 F 466 81.55 1240 reject_low 1 ALIGNMENT 0 Y12-17l16.p1k vc_3 478 137 2104 2103 C 342 0.00 1240 reject_low 5 ALIGNMENT 23 Y12-17l16.p1k vc_3 508 479 2441 2470 C 30 93.33 1240 reject_low 15 ALIGNMENT 0 Y12-17l16.p1k vc_5 478 137 5024 5023 C 342 0.00 1240 reject_low 6 ALIGNMENT 156 Y12-17l16.p1k vc_4 479 806 5873 6192 F 328 84.15 1240 reject_low 7 ALIGNMENT 0 Y12-17l16.p1k vc_3 137 441 2496 2495 F 305 0.00 1240 reject_low 10 ALIGNMENT 0 Y12-17l16.p1k vc_1 478 137 2471 2470 C 342 0.00 1240 reject_low 14 ALIGNMENT 0 Y12-17l16.p1k vc_7 451 137 2753 2752 C 315 0.00 1240 reject_low 12 ALIGNMENT 36 Y12-17l16.p1k vc_3 442 477 2496 2531 F 36 100.00 1240 reject_low 10 ALIGNMENT 225 Y12-17l16.p1k chrm 69 441 75801 76166 F 373 93.03 1240 accept 0 ALIGNMENT 176 Y12-17l16.p1k vc_7 479 944 13564 14013 F 466 81.55 1240 reject_low 2 ALIGNMENT 0 Y12-17l16.p1k vc_2 137 441 2129 2128 F 305 0.00 1240 reject_low 9 ALIGNMENT 0 Y12-17l16.p1k vc_4 441 137 5848 5847 C 305 0.00 1240 reject_low 11 ALIGNMENT 26 Y12-17l16.p1k vc_7 477 452 2727 2752 C 26 100.00 1240 reject_low 12 ALIGNMENT 175 Y12-17l16.p1k vc_3 944 479 1654 2103 C 466 82.40 1240 reject_low 5 ALIGNMENT 0 Y12-17l16.p1k vc_1 137 441 2496 2495 F 305 0.00 1240 reject_low 8 ALIGNMENT 20 Y12-17l16.p1k vc_5 458 477 2379 2398 F 20 100.00 1240 reject_low 13 ALIGNMENT 36 Y12-17l16.p1k vc_1 442 477 2496 2531 F 36 100.00 1240 reject_low 8 ALIGNMENT 838 Y12-17l17.p1k chr11 923 3 462432 463348 C 921 97.72 1316 accept 0 ALIGNMENT 358 Y12-17l17.q1k chr11 1 593 458320 458907 F 593 88.87 602 accept 0 ALIGNMENT 937 Y12-17l18.p1k chr05 1119 11 317625 318728 C 1109 96.03 1257 accept 0 ALIGNMENT 910 Y12-17l18.q1k chr05 32 1038 314230 315235 F 1007 98.01 1286 accept 0 ALIGNMENT 743 Y12-17l19.q1k chr04 63 1013 850837 851775 F 951 95.06 1364 accept 0 ALIGNMENT 377 Y12-17l19.p1k chr04 916 73 854859 855675 C 844 84.72 1398 accept 0 ALIGNMENT 872 Y12-17l20.q1k chr01 31 1159 196612 197733 F 1129 94.51 1262 accept 0 ALIGNMENT 854 Y12-17l21.p1k chr09 4 943 132317 133247 F 940 97.77 1190 accept 0 ALIGNMENT 878 Y12-17l21.q1k chr09 1114 16 135766 136854 C 1099 95.72 1190 accept 0 ALIGNMENT 0 Y12-17l23.p1k chr02 62 190 606653 606652 F 129 0.00 1220 reject_low 1 ALIGNMENT 0 Y12-17l23.p1k chr02 680 829 607141 607140 F 150 0.00 1220 reject_low 1 ALIGNMENT 391 Y12-17l23.p1k chr02 191 679 606653 607141 F 489 93.66 1220 reject_low 1 ALIGNMENT 1018 Y12-17l23.p1k chr16 14 1220 406877 408083 F 1207 95.86 1220 accept 0 ALIGNMENT 772 Y12-17l23.q1k chr16 905 16 412013 412901 C 890 97.08 1228 accept 0 ALIGNMENT 881 Y12-17l24.p1k chr04 996 4 369862 370841 C 993 97.28 1191 accept 0 ALIGNMENT 0 Y12-17l24.p1k chr04 297 672 124010 124382 F 376 0.00 1191 reject_low 1 ALIGNMENT 22 Y12-17l24.p1k chr04 271 296 123984 124009 F 26 96.15 1191 reject_low 1 ALIGNMENT 22 Y12-17l24.p1k chr04 673 731 124383 124441 F 59 79.66 1191 reject_low 1 ALIGNMENT 940 Y12-17l24.q1k chr04 28 1105 366746 367820 F 1078 96.57 1198 accept 0 ALIGNMENT 0 Y12-17l24.p1k chr04 62 270 123984 123983 F 209 0.00 1191 reject_low 1 ALIGNMENT 906 Y12-17m01.q1k chr10 31 1087 210402 211446 F 1057 96.88 1255 accept 0 ALIGNMENT 925 Y12-17m01.p1k chr10 1127 14 215015 216132 C 1114 95.78 1201 accept 0 ALIGNMENT 702 Y12-17m03.p1k chr07 43 899 423340 424185 F 857 96.15 1424 accept 0 ALIGNMENT 834 Y12-17m03.q1k chr07 996 58 426547 427474 C 939 97.76 1410 accept 0 ALIGNMENT 910 Y12-17m04.q1k chr14 4 1080 375258 376337 F 1077 96.01 1210 accept 0 ALIGNMENT 891 Y12-17m04.p1k chr14 1155 1 377545 378695 C 1155 94.20 1271 accept 0 ALIGNMENT 904 Y12-17m06.p1k chr07 1089 1 1001109 1002189 C 1089 95.32 1234 accept 0 ALIGNMENT 781 Y12-17m06.p1k chr08 1047 1 451543 452584 C 1047 92.36 1234 reject_low 1 ALIGNMENT 644 Y12-17m06.q1k chr07 47 876 997194 998001 F 830 95.06 1377 accept 0 ALIGNMENT 786 Y12-17m07.q1k chr05 1 1008 462874 463878 F 1008 94.15 1191 accept 0 ALIGNMENT 840 Y12-17m07.p1k chr05 995 25 466471 467426 C 971 97.43 1351 accept 0 ALIGNMENT 860 Y12-17m08.q1k chr04 10 1056 1314021 1315083 F 1047 95.61 1274 accept 0 ALIGNMENT 862 Y12-17m08.p1k chr04 1117 1 1318266 1319378 C 1117 93.64 1264 accept 0 ALIGNMENT 465 Y12-17m10.p1k chr04 233 892 488879 489535 F 660 93.33 1433 accept 0 ALIGNMENT 0 Y12-17m10.p1k chr05 233 642 434967 434966 F 410 0.00 1433 reject_low 15 ALIGNMENT 164 Y12-17m10.p1k chr15 233 40 854272 854466 C 194 96.39 1433 reject_low 11 ALIGNMENT 179 Y12-17m10.p1k chr01 232 40 182614 182806 C 193 98.96 1433 reject_low 2 ALIGNMENT 179 Y12-17m10.p1k chr09 232 40 205217 205409 C 193 98.96 1433 reject_low 5 ALIGNMENT 0 Y12-17m10.p1k chr09 642 233 205218 205217 C 410 0.00 1433 reject_low 5 ALIGNMENT 0 Y12-17m10.p1k chr15 642 234 854273 854272 C 409 0.00 1433 reject_low 11 ALIGNMENT 0 Y12-17m10.p1k chr04 642 233 1023132 1023131 C 410 0.00 1433 reject_low 19 ALIGNMENT 0 Y12-17m10.p1k chr14 642 234 546739 546738 C 409 0.00 1433 reject_low 1 ALIGNMENT 179 Y12-17m10.p1k chr11 40 232 202437 202629 F 193 98.96 1433 reject_low 7 ALIGNMENT 0 Y12-17m10.p1k chr08 236 642 146667 146666 F 407 0.00 1433 reject_low 8 ALIGNMENT 0 Y12-17m10.p1k chr01 642 233 182615 182614 C 410 0.00 1433 reject_low 2 ALIGNMENT 179 Y12-17m10.p1k chr07 232 40 707199 707391 C 193 98.96 1433 reject_low 3 ALIGNMENT 158 Y12-17m10.p1k chr16 222 40 856551 856734 C 183 97.27 1433 reject_low 18 ALIGNMENT 0 Y12-17m10.p1k chr04 233 642 946289 946288 F 410 0.00 1433 reject_low 13 ALIGNMENT 179 Y12-17m10.p1k chr07 232 40 712210 712402 C 193 98.96 1433 reject_low 4 ALIGNMENT 149 Y12-17m10.p1k chr14 236 41 726231 726427 C 196 93.37 1433 reject_low 16 ALIGNMENT 0 Y12-17m10.p1k chr07 642 233 712211 712210 C 410 0.00 1433 reject_low 4 ALIGNMENT 154 Y12-17m10.p1k chr04 232 40 1023131 1023324 C 193 94.82 1433 reject_low 19 ALIGNMENT 162 Y12-17m10.p1k chr07 42 232 319575 319765 F 191 96.34 1433 reject_low 14 ALIGNMENT 158 Y12-17m10.p1k chr03 230 40 168386 168577 C 191 95.81 1433 reject_low 17 ALIGNMENT 0 Y12-17m10.p1k chr07 233 642 405456 405455 F 410 0.00 1433 reject_low 20 ALIGNMENT 0 Y12-17m10.p1k chr07 642 233 707200 707199 C 410 0.00 1433 reject_low 3 ALIGNMENT 0 Y12-17m10.p1k chr16 642 223 856552 856551 C 420 0.00 1433 reject_low 18 ALIGNMENT 160 Y12-17m10.p1k chr05 40 232 434774 434967 F 193 95.85 1433 reject_low 15 ALIGNMENT 166 Y12-17m10.p1k chr16 232 40 769317 769510 C 193 96.89 1433 reject_low 9 ALIGNMENT 164 Y12-17m10.p1k chr12 233 40 373999 374193 C 194 96.39 1433 reject_low 10 ALIGNMENT 0 Y12-17m10.p1k chr07 233 642 319765 319764 F 410 0.00 1433 reject_low 14 ALIGNMENT 179 Y12-17m10.p1k chr09 232 40 210305 210497 C 193 98.96 1433 reject_low 6 ALIGNMENT 0 Y12-17m10.p1k chr03 642 231 168387 168386 C 412 0.00 1433 reject_low 17 ALIGNMENT 0 Y12-17m10.p1k chr04 77 232 488879 488878 F 156 0.00 1433 accept 0 ALIGNMENT 0 Y12-17m10.p1k chr02 642 233 197718 197717 C 410 0.00 1433 reject_low 12 ALIGNMENT 0 Y12-17m10.p1k chr12 642 234 374000 373999 C 409 0.00 1433 reject_low 10 ALIGNMENT 128 Y12-17m10.p1k chr07 40 232 405268 405456 F 193 91.19 1433 reject_low 20 ALIGNMENT 0 Y12-17m10.p1k chr09 642 233 210306 210305 C 410 0.00 1433 reject_low 6 ALIGNMENT 180 Y12-17m10.p1k chr14 233 40 546738 546931 C 194 98.97 1433 reject_low 1 ALIGNMENT 0 Y12-17m10.p1k chr14 642 237 726232 726231 C 406 0.00 1433 reject_low 16 ALIGNMENT 163 Y12-17m10.p1k chr02 232 40 197717 197910 C 193 96.37 1433 reject_low 12 ALIGNMENT 163 Y12-17m10.p1k chr04 40 232 946096 946289 F 193 96.37 1433 reject_low 13 ALIGNMENT 0 Y12-17m10.p1k chr11 233 642 202629 202628 F 410 0.00 1433 reject_low 7 ALIGNMENT 0 Y12-17m10.p1k chr16 642 233 769318 769317 C 410 0.00 1433 reject_low 9 ALIGNMENT 167 Y12-17m10.p1k chr08 40 235 146471 146667 F 196 96.43 1433 reject_low 8 ALIGNMENT 694 Y12-17m10.q1k chr04 885 1 492386 493260 C 885 94.92 1246 accept 0 ALIGNMENT 808 Y12-17m12.q1k chr05 958 4 162802 163734 C 955 96.96 1281 accept 0 ALIGNMENT 864 Y12-17m12.p1k chr05 1 1136 159827 160943 F 1136 93.84 1244 accept 0 ALIGNMENT 142 Y12-17m13.p1k chr09 225 48 246358 246540 C 178 96.63 1411 ambiguous_trans_ua 7 ALIGNMENT 129 Y12-17m13.p1k chr10 61 225 541034 541200 F 165 95.76 1411 ambiguous_trans_ua 19 ALIGNMENT 20 Y12-17m13.p1k chr16 171 61 804522 804630 C 111 77.48 1411 ambiguous_trans_ua 30 ALIGNMENT 144 Y12-17m13.p1k chr05 225 46 62283 62467 C 180 96.67 1411 ambiguous_trans_ua 2 ALIGNMENT 29 Y12-17m13.p1k chr16 263 211 62338 62390 C 53 86.79 1411|0,8 ambiguous_trans_ua 32 ALIGNMENT 0 Y12-17m13.p1k chr06 103 77 137903 137902 C 27 0.00 1411 ambiguous_trans_ua 29 ALIGNMENT 126 Y12-17m13.p1k chr04 225 45 1206835 1207021 C 181 93.37 1411 ambiguous_trans 8 ALIGNMENT 969 Y12-17m13.q1k chr02 5 1154 639341 640499 F 1150 95.91 1266 accept 0 ALIGNMENT 124 Y12-17m13.p1k chr16 225 61 62530 62695 C 165 95.15 1411|7,0 ambiguous_trans_ua 32 ALIGNMENT 126 Y12-17m13.p1k chr16 45 225 810231 810417 F 181 93.37 1411 ambiguous_trans 9 ALIGNMENT 0 Y12-17m13.p1k chr07 168 238 817532 817531 F 71 0.00 1411 ambiguous_trans 27 ALIGNMENT 0 Y12-17m13.p1k chr16 77 225 850625 850624 F 149 0.00 1411 ambiguous_trans 12 ALIGNMENT 0 Y12-17m13.p1k chr16 226 225 804834 810224 F 0 0.00 1411 ambiguous_trans 31 ALIGNMENT 0 Y12-17m13.p1k chr16 77 225 804641 804640 F 149 0.00 1411 ambiguous_trans 11 ALIGNMENT 133 Y12-17m13.p1k chr04 61 225 513710 513875 F 165 96.97 1411 ambiguous_trans 13 ALIGNMENT 0 Y12-17m13.p1k chr10 238 157 540888 540887 C 82 0.00 1411 ambiguous_trans_ua 28 ALIGNMENT 144 Y12-17m13.p1k chr08 46 225 389187 389371 F 180 96.67 1411 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-17m13.p1k chr06 238 156 137852 137851 C 83 0.00 1411 ambiguous_trans_ua 29 ALIGNMENT 124 Y12-17m13.p1k chr02 225 61 29782 29947 C 165 95.15 1411 ambiguous_trans 20 ALIGNMENT 21 Y12-17m13.p1k chr16 226 263 804641 804678 F 38 89.47 1411 ambiguous_trans 11 ALIGNMENT 60 Y12-17m13.p1k chr16 225 61 850141 850311 C 165 82.42 1411 ambiguous_trans 26 ALIGNMENT 133 Y12-17m13.p1k chr06 225 61 143676 143841 C 165 96.97 1411 ambiguous_trans 15 ALIGNMENT 51 Y12-17m13.p1k chr07 61 167 817423 817532 F 107 85.05 1411 ambiguous_trans 27 ALIGNMENT 21 Y12-17m13.p1k chr16 226 263 850625 850662 F 38 89.47 1411 ambiguous_trans 12 ALIGNMENT 0 Y12-17m13.p1k chr16 238 172 804523 804522 C 67 0.00 1411 ambiguous_trans_ua 30 ALIGNMENT 0 Y12-17m13.p1k chr04 225 77 1207028 1207027 C 149 0.00 1411 ambiguous_trans 10 ALIGNMENT 0 Y12-17m13.p1k chr16 218 219 62383 62536 C 0 0.00 1411 ambiguous_trans_ua 32 ALIGNMENT 142 Y12-17m13.p1k chr13 45 225 168355 168540 F 181 96.13 1411 ambiguous_trans_ua 1 ALIGNMENT 29 Y12-17m13.p1k chr06 155 104 137851 137902 C 52 86.54 1411 ambiguous_trans_ua 29 ALIGNMENT 133 Y12-17m13.p1k chr12 225 61 946957 947122 C 165 96.97 1411 ambiguous_trans 17 ALIGNMENT 126 Y12-17m13.p1k chr16 45 225 804647 804833 F 181 93.37 1411 ambiguous_trans 31 ALIGNMENT 133 Y12-17m13.p1k chr06 225 61 138049 138214 C 165 96.97 1411 ambiguous_trans 14 ALIGNMENT 41 Y12-17m13.p1k chr10 156 82 540887 540961 C 75 86.67 1411 ambiguous_trans_ua 28 ALIGNMENT 144 Y12-17m13.p1k chr15 46 225 709699 709883 F 180 96.67 1411 ambiguous_trans 5 ALIGNMENT 124 Y12-17m13.p1k chr04 225 61 871957 872122 C 165 95.15 1411 ambiguous_trans 21 ALIGNMENT 124 Y12-17m13.p1k chr14 61 225 726640 726805 F 165 95.15 1411 ambiguous_trans_ua 23 ALIGNMENT 141 Y12-17m13.p1k chr05 46 225 431493 431677 F 180 96.11 1411 ambiguous_trans_ua 6 ALIGNMENT 124 Y12-17m13.p1k chr12 61 225 976279 976444 F 165 95.15 1411 ambiguous_trans 22 ALIGNMENT 21 Y12-17m13.p1k chr16 226 263 810225 810262 F 38 89.47 1411 ambiguous_trans 31 ALIGNMENT 60 Y12-17m13.p1k chr16 225 61 844550 844720 C 165 82.42 1411 ambiguous_trans 25 ALIGNMENT 130 Y12-17m13.p1k chr14 61 225 562059 562224 F 165 96.36 1411 ambiguous_trans_ua 18 ALIGNMENT 64 Y12-17m13.p1k chr16 45 225 850631 850820 F 181 82.32 1411 ambiguous_trans 24 ALIGNMENT 144 Y12-17m13.p1k chr15 46 225 704071 704255 F 180 96.67 1411 ambiguous_trans 4 ALIGNMENT 133 Y12-17m13.p1k chr07 225 61 817220 817385 C 165 96.97 1411 ambiguous_trans 16 ALIGNMENT 21 Y12-17m13.p1k chr04 263 226 1206990 1207027 C 38 89.47 1411 ambiguous_trans 10 ALIGNMENT 739 Y12-17m14.p1k chr10 950 4 687473 688435 C 947 94.61 1157 accept_chi 1 ALIGNMENT 841 Y12-17m14.q1k chr16 2 1060 688518 689573 F 1059 95.00 1277 accept_chi 0 ALIGNMENT 0 Y12-17m15.p1k chr13 673 77 588629 588628 C 597 0.00 1272 reject_low 1 ALIGNMENT 864 Y12-17m15.p1k chr14 48 1113 393687 394737 F 1066 95.59 1272 accept 0 ALIGNMENT 882 Y12-17m15.q1k chr14 988 11 397061 398031 C 978 98.26 1335 accept 0 ALIGNMENT 0 Y12-17m15.p1k chr13 776 719 588585 588584 C 58 0.00 1272 reject_low 1 ALIGNMENT 25 Y12-17m15.p1k chr13 718 674 588584 588628 C 45 88.89 1272 reject_low 1 ALIGNMENT 862 Y12-17m17.p1k chr02 1059 3 147946 148992 C 1057 95.46 1256 accept 0 ALIGNMENT 800 Y12-17m17.q1k chr02 1 982 143780 144763 F 982 95.11 1236 accept 0 ALIGNMENT 987 Y12-17m18.p1k chr11 1327 5 318943 320260 C 1323 93.50 1369 accept_chi 0 ALIGNMENT 590 Y12-17m18.q1k chr04 49 840 579741 580520 F 792 93.18 1444 accept_chi 1 ALIGNMENT 0 Y12-17m19.q1k chr02 513 780 169379 169378 F 268 0.00 1397 reject_low 1 ALIGNMENT 921 Y12-17m19.q1k chr02 1003 1 413699 414691 C 1003 98.40 1397 accept 0 ALIGNMENT 841 Y12-17m19.p1k chr02 1 1031 410896 411911 F 1031 95.44 1236 accept 0 ALIGNMENT 413 Y12-17m19.q1k chr02 1 512 168868 169379 F 512 94.14 1397 reject_low 1 ALIGNMENT 995 Y12-17m20.q1k chr09 19 1149 82554 83684 F 1131 96.46 1314 accept 0 ALIGNMENT 947 Y12-17m20.p1k chr09 1218 21 86224 87411 C 1198 94.24 1352 accept 0 ALIGNMENT 0 Y12-17m23.p1k chr12 188 724 374429 374428 F 537 0.00 1168 reject_low 3 ALIGNMENT 69 Y12-17m23.p1k chr15 187 112 340298 340373 C 76 97.37 1168 reject_low 4 ALIGNMENT 78 Y12-17m23.p1k chr11 99 189 490595 490686 F 91 95.60 1168 reject_low 1 ALIGNMENT 0 Y12-17m23.p1k chr04 724 188 619964 619963 C 537 0.00 1168 reject_low 2 ALIGNMENT 0 Y12-17m23.p1k chr11 62 98 490595 490594 F 37 0.00 1168 reject_low 1 ALIGNMENT 72 Y12-17m23.p1k chr12 109 187 374351 374429 F 79 97.47 1168 reject_low 3 ALIGNMENT 0 Y12-17m23.p1k chr12 62 108 374351 374350 F 47 0.00 1168 reject_low 3 ALIGNMENT 0 Y12-17m23.p1k chr15 111 62 340374 340373 C 50 0.00 1168 reject_low 4 ALIGNMENT 0 Y12-17m23.p1k chr05 724 187 492348 492347 C 538 0.00 1168 reject_low 5 ALIGNMENT 0 Y12-17m23.p1k chr05 113 62 492420 492419 C 52 0.00 1168 reject_low 5 ALIGNMENT 786 Y12-17m23.q1k chr10 983 62 237046 237955 C 922 96.10 1241 accept 0 ALIGNMENT 66 Y12-17m23.p1k chr05 186 114 492347 492419 C 73 97.26 1168 reject_low 5 ALIGNMENT 0 Y12-17m23.p1k chr15 724 188 340299 340298 C 537 0.00 1168 reject_low 4 ALIGNMENT 72 Y12-17m23.p1k chr04 187 109 619963 620041 C 79 97.47 1168 reject_low 2 ALIGNMENT 0 Y12-17m23.p1k chr04 108 62 620042 620041 C 47 0.00 1168 reject_low 2 ALIGNMENT 793 Y12-17m23.p1k chr10 16 1014 233757 234740 F 999 95.60 1168 accept 0 ALIGNMENT 0 Y12-17m23.p1k chr11 190 724 490686 490685 F 535 0.00 1168 reject_low 1 ALIGNMENT 0 Y12-17m24.p1k chr12 651 573 600028 600027 C 79 0.00 1172 reject_low 1 ALIGNMENT 736 Y12-17m24.q1k chr04 933 1 894685 895594 C 933 95.61 1143 accept 0 ALIGNMENT 63 Y12-17m24.p1k chr12 572 342 600027 600257 C 231 76.19 1172 reject_low 1 ALIGNMENT 701 Y12-17m24.p1k chr04 1 789 891907 892685 F 789 98.10 1172 accept 0 ALIGNMENT 0 Y12-17m24.p1k chr12 341 62 600258 600257 C 280 0.00 1172 reject_low 1 ALIGNMENT 750 Y12-17n01.q1k chr01 966 5 10712 11659 C 962 95.11 1257 accept 0 ALIGNMENT 802 Y12-17n01.p1k chr01 3 972 7192 8154 F 970 95.98 1179 accept 0 ALIGNMENT 0 Y12-17n01.q1k chr08 89 669 528612 528611 F 581 0.00 1257 reject_low 1 ALIGNMENT 28 Y12-17n01.q1k chr08 1 88 528524 528612 F 88 78.41 1257 reject_low 1 ALIGNMENT 798 Y12-17n04.p1k chr11 7 1014 431567 432550 F 1008 95.54 1288 accept 0 ALIGNMENT 832 Y12-17n04.q1k chr11 1039 44 434902 435878 C 996 96.59 1428 accept 0 ALIGNMENT 86 Y12-17n04.p1k chr08 19 124 104302 104407 F 106 94.34 1288 reject_low 1 ALIGNMENT 0 Y12-17n04.p1k chr08 125 442 104408 104725 F 318 0.00 1288 reject_low 1 ALIGNMENT 291 Y12-17n04.p1k chr08 443 809 104726 105088 F 367 95.10 1288 reject_low 1 ALIGNMENT 781 Y12-17n05.p1k chr15 5 1015 285972 286962 F 1011 93.87 1153 accept 0 ALIGNMENT 869 Y12-17n06.p1k chr08 1020 3 269335 270334 C 1018 97.45 1253 accept 0 ALIGNMENT 876 Y12-17n06.q1k chr08 12 1062 265296 266332 F 1051 96.00 1235 accept 0 ALIGNMENT 765 Y12-17n08.q1k chr08 43 976 60843 61768 F 934 95.82 1431 accept 0 ALIGNMENT 917 Y12-17n08.p1k chr08 1114 3 64062 65184 C 1112 95.59 1282 accept 0 ALIGNMENT 619 Y12-17n09.q1k chr07 772 4 605976 606738 C 769 94.67 1328 accept 0 ALIGNMENT 103 Y12-17n09.p1k chr07 332 849 602286 602802 F 518 74.90 1281 accept 0 ALIGNMENT 0 Y12-17n10.q1k chr14 62 934 519093 519092 F 873 0.00 1301 reject_low 2 ALIGNMENT 40 Y12-17n10.q1k chr12 1016 936 793918 793995 C 81 86.42 1301 reject_low 1 ALIGNMENT 881 Y12-17n10.q1k chr10 1030 11 541408 542417 C 1020 96.86 1301 accept 0 ALIGNMENT 0 Y12-17n10.q1k chr12 935 62 793996 793995 C 874 0.00 1301 reject_low 1 ALIGNMENT 913 Y12-17n10.p1k chr10 15 1183 538483 539635 F 1169 94.78 1320 accept 0 ALIGNMENT 39 Y12-17n10.q1k chr14 935 1008 519093 519163 F 74 87.84 1301 reject_low 2 ALIGNMENT 115 Y12-17n11.p1k chr05 634 182 515904 516356 C 453 75.72 1264 reject_low 1 ALIGNMENT 0 Y12-17n11.p1k chr05 181 62 516357 516356 C 120 0.00 1264 reject_low 1 ALIGNMENT 692 Y12-17n11.q1k chr04 67 952 630000 630881 F 886 93.91 1362 accept 0 ALIGNMENT 800 Y12-17n11.p1k chr04 1038 6 634176 635199 C 1033 93.71 1264 accept 0 ALIGNMENT 940 Y12-17n13.p1k chr11 1106 1 372548 373643 C 1106 96.29 1295 accept 0 ALIGNMENT 756 Y12-17n13.q1k chr11 45 1021 369348 370307 F 977 94.17 1368 accept 0 ALIGNMENT 848 Y12-17n14.q1k chr02 1122 9 489810 490895 C 1114 93.18 1313 accept 0 ALIGNMENT 915 Y12-17n14.p1k chr02 20 1085 485878 486943 F 1066 96.44 1285 accept 0 ALIGNMENT 921 Y12-17n15.q1k chr01 1123 18 119435 120528 C 1106 96.11 1232 accept 0 ALIGNMENT 923 Y12-17n15.p1k chr01 13 1117 114792 115882 F 1105 95.84 1273 accept 0 ALIGNMENT 753 Y12-17n16.p1k chr10 1052 33 258707 259708 C 1020 93.92 1297 accept_chi 1 ALIGNMENT 767 Y12-17n16.q1k chr13 54 991 690941 691865 F 938 96.06 1345 accept_chi 0 ALIGNMENT 814 Y12-17n17.p1k chr07 7 937 47277 48221 F 931 96.99 1269 accept 0 ALIGNMENT 841 Y12-17n17.q1k chr07 1001 8 51112 52119 C 994 96.68 1277 accept 0 ALIGNMENT 860 Y12-17n18.q1k chr14 992 5 21138 22111 C 988 97.37 1380 accept 0 ALIGNMENT 949 Y12-17n18.p1k chr14 5 1062 18326 19386 F 1058 97.26 1285 accept 0 ALIGNMENT 930 Y12-17n19.p1k chr05 1178 2 518671 519828 C 1177 94.99 1335 accept 0 ALIGNMENT 771 Y12-17n19.q1k chr05 1 910 516159 517061 F 910 96.26 1210 accept 0 ALIGNMENT 929 Y12-17n20.p1k chr12 32 1226 764639 765825 F 1195 93.72 1372 accept 0 ALIGNMENT 821 Y12-17n20.q1k chr12 1033 5 768087 769124 C 1029 95.72 1210 accept 0 ALIGNMENT 173 Y12-17n21.q1k chr04 304 52 757399 757650 C 253 90.51 1309 reject_low 10 ALIGNMENT 38 Y12-17n21.q1k chr04 549 488 759713 759774 C 62 88.71 1309 reject_low 11 ALIGNMENT 328 Y12-17n21.q1k chr04 732 85 759169 759771 C 648 86.42 1309 reject_low 9 ALIGNMENT 0 Y12-17n21.q1k chr04 535 518 757400 757399 C 18 0.00 1309 reject_low 13 ALIGNMENT 0 Y12-17n21.q1k chr04 556 337 759727 759712 C 220 0.00 1309 reject_low 15 ALIGNMENT 439 Y12-17n21.q1k chr04 732 52 757804 758460 C 681 90.01 1309 reject_low 2 ALIGNMENT 119 Y12-17n21.q1k chr04 718 557 759567 759726 C 162 91.98 1309 reject_low 15 ALIGNMENT 343 Y12-17n21.q1k chr04 718 52 758799 759420 C 667 86.81 1309 reject_low 5 ALIGNMENT 0 Y12-17n21.q1k chr04 535 128 757790 757789 C 408 0.00 1309 reject_low 12 ALIGNMENT 0 Y12-17n21.q1k chr04 487 137 759775 759774 C 351 0.00 1309 reject_low 11 ALIGNMENT 0 Y12-17n21.q1k chr04 130 128 757978 758001 C 3 0.00 1309 reject_low 1 ALIGNMENT 0 Y12-17n21.q1k chr04 535 305 757400 757399 C 231 0.00 1309 reject_low 10 ALIGNMENT 204 Y12-17n21.q1k chr04 732 347 759361 759723 C 386 86.79 1309 reject_low 14 ALIGNMENT 608 Y12-17n21.p1k chr04 76 857 752380 753141 F 782 95.52 1382 accept 0 ALIGNMENT 0 Y12-17n21.q1k chr04 346 337 759724 759712 C 10 0.00 1309 reject_low 14 ALIGNMENT 32 Y12-17n21.q1k chr04 127 52 758002 758076 C 76 84.21 1309 reject_low 1,13 ALIGNMENT 0 Y12-17n21.q1k chr04 130 128 757765 758001 C 3 0.00 1309 reject_low 13 ALIGNMENT 499 Y12-17n21.q1k chr04 718 52 757605 758268 C 667 92.50 1309 accept 0 ALIGNMENT 334 Y12-17n21.q1k chr04 732 52 758209 758844 C 681 85.90 1309 reject_low 7 ALIGNMENT 39 Y12-17n21.q1k chr04 336 275 759713 759774 C 62 88.71 1309 reject_low 14,15 ALIGNMENT 331 Y12-17n21.q1k chr04 732 52 758401 759036 C 681 85.76 1309 reject_low 8 ALIGNMENT 340 Y12-17n21.q1k chr04 718 52 758991 759612 C 667 86.66 1309 reject_low 6 ALIGNMENT 219 Y12-17n21.q1k chr04 517 131 757399 757764 C 387 87.60 1309 reject_low 13 ALIGNMENT 435 Y12-17n21.q1k chr04 892 131 757245 757977 C 762 87.93 1309 reject_low 1 ALIGNMENT 29 Y12-17n21.q1k chr04 127 52 757789 757863 C 76 82.89 1309 reject_low 12 ALIGNMENT 346 Y12-17n21.q1k chr04 718 52 758607 759228 C 667 86.96 1309 reject_low 4 ALIGNMENT 0 Y12-17n21.q1k chr04 274 137 759775 759774 C 138 0.00 1309 reject_low 14,15 ALIGNMENT 343 Y12-17n21.q1k chr04 732 52 758017 758652 C 681 86.34 1309 reject_low 3 ALIGNMENT 784 Y12-17n23.p1k chr02 961 10 718083 719019 C 952 96.22 1205 accept 0 ALIGNMENT 854 Y12-17n23.q1k chr02 11 982 713182 714149 F 972 97.02 1155 accept 0 ALIGNMENT 801 Y12-17n24.q1k chr15 948 13 45998 46919 C 936 96.79 1220 accept 0 ALIGNMENT 776 Y12-17o02.q1k chr08 947 3 8364 9296 C 945 95.45 1264 accept 0 ALIGNMENT 924 Y12-17o03.q1k chr15 31 1066 631010 632036 F 1036 97.30 1286 accept 0 ALIGNMENT 739 Y12-17o03.p1k chr15 1002 42 633892 634832 C 961 95.11 1298 accept 0 ALIGNMENT 0 Y12-17o04.p1k chrm 62 131 9447 9446 F 70 0.00 1118 reject_low 5 ALIGNMENT 0 Y12-17o04.p1k chrm 167 62 34982 34981 C 106 0.00 1118 reject_low 9 ALIGNMENT 50 Y12-17o04.p1k chrm 167 222 71208 71262 F 56 98.21 1118 reject_low 12 ALIGNMENT 35 Y12-17o04.q1k chr06 33 74 31688 31729 F 42 97.62 1265 reject_low 4 ALIGNMENT 0 Y12-17o04.p1k chrm 596 218 46313 46312 C 379 0.00 1118 reject_low 8 ALIGNMENT 129 Y12-17o04.p1k chrm 229 75 80488 80641 C 155 98.06 1118 reject_low 2 ALIGNMENT 595 Y12-17o04.p1k chr12 228 1004 452941 453712 F 777 93.69 1118 accept 0 ALIGNMENT 0 Y12-17o04.p1k chrm 596 224 76588 76587 C 373 0.00 1118 reject_low 3 ALIGNMENT 856 Y12-17o04.q1k chr12 1051 33 458332 459349 C 1019 96.27 1265 accept 0 ALIGNMENT 0 Y12-17o04.p1k chrm 596 230 66814 66813 C 367 0.00 1118 reject_low 7 ALIGNMENT 0 Y12-17o04.p1k chr12 62 227 462078 462077 F 166 0.00 1118 accept 1 ALIGNMENT 0 Y12-17o04.p1k chrm 161 76 76648 80606 C 86 0.00 1118 reject_low 3 ALIGNMENT 51 Y12-17o04.p1k chrm 165 224 75613 75671 F 60 96.67 1118 reject_low 11 ALIGNMENT 0 Y12-17o04.p1k chrm 62 164 75613 75612 F 103 0.00 1118 reject_low 11 ALIGNMENT 0 Y12-17o04.q1k chr06 75 773 31729 31728 F 699 0.00 1265 reject_low 4 ALIGNMENT 47 Y12-17o04.p1k chrm 217 154 2092 2154 C 64 92.19 1118 reject_low 10 ALIGNMENT 0 Y12-17o04.p1k chrm 162 62 66879 66878 C 101 0.00 1118 reject_low 7 ALIGNMENT 57 Y12-17o04.p1k chrm 75 8 80607 80674 C 68 100.00 1118 reject_low 3 ALIGNMENT 57 Y12-17o04.p1k chrm 221 155 34279 34346 C 67 95.52 1118 reject_low 6 ALIGNMENT 856 Y12-17o04.q1k chr12 1051 33 467469 468486 C 1019 96.27 1265 accept 1 ALIGNMENT 0 Y12-17o04.p1k chrm 596 230 80489 80488 C 367 0.00 1118 reject_low 2 ALIGNMENT 0 Y12-17o04.p1k chrm 596 218 2093 2092 C 379 0.00 1118 reject_low 10 ALIGNMENT 0 Y12-17o04.p1k chrm 223 596 71262 71261 F 374 0.00 1118 reject_low 12 ALIGNMENT 0 Y12-17o04.p1k chrm 224 596 9539 9538 F 373 0.00 1118 reject_low 5 ALIGNMENT 56 Y12-17o04.p1k chrm 132 223 9447 9539 F 92 89.13 1118 reject_low 5 ALIGNMENT 0 Y12-17o04.p1k chrm 149 62 46380 46379 C 88 0.00 1118 reject_low 8 ALIGNMENT 0 Y12-17o04.p1k chrm 153 62 2155 2154 C 92 0.00 1118 reject_low 10 ALIGNMENT 48 Y12-17o04.p1k chrm 227 168 34923 34981 C 60 95.00 1118 reject_low 9 ALIGNMENT 0 Y12-17o04.p1k chrm 154 62 34347 34346 C 93 0.00 1118 reject_low 6 ALIGNMENT 0 Y12-17o04.p1k chrm 596 222 34280 34279 C 375 0.00 1118 reject_low 6 ALIGNMENT 0 Y12-17o04.p1k chr12 62 227 452941 452940 F 166 0.00 1118 accept 0 ALIGNMENT 49 Y12-17o04.p1k chrm 229 163 66813 66878 C 67 92.54 1118 reject_low 7 ALIGNMENT 47 Y12-17o04.p1k chrm 217 150 46312 46379 C 68 91.18 1118 reject_low 8 ALIGNMENT 0 Y12-17o04.p1k chrm 225 596 75671 75670 F 372 0.00 1118 reject_low 11 ALIGNMENT 56 Y12-17o04.p1k chrm 223 162 76587 76647 C 62 98.39 1118 reject_low 3 ALIGNMENT 0 Y12-17o04.p1k chrm 62 166 71208 71207 F 105 0.00 1118 reject_low 12 ALIGNMENT 0 Y12-17o04.p1k chrm 596 228 34924 34923 C 369 0.00 1118 reject_low 9 ALIGNMENT 595 Y12-17o04.p1k chr12 228 1004 462078 462849 F 777 93.69 1118 accept 1 ALIGNMENT 1009 Y12-17o05.q1k chr14 25 1233 421351 422559 F 1209 95.37 1235 accept 0 ALIGNMENT 786 Y12-17o05.p1k chr14 921 47 424609 425479 C 875 97.71 1320 accept 0 ALIGNMENT 0 Y12-17o06.q1k chr16 379 794 26148 26147 F 416 0.00 1253 reject_low 1 ALIGNMENT 962 Y12-17o06.q1k chr13 1182 29 916691 917841 C 1154 95.75 1253 accept 0 ALIGNMENT 311 Y12-17o06.q1k chr16 29 378 25800 26148 F 350 97.14 1253 reject_low 1 ALIGNMENT 861 Y12-17o06.p1k chr13 2 1096 913612 914701 F 1095 94.34 1178 accept 0 ALIGNMENT 38 Y12-17o07.q1k chr04 676 575 1353109 1353210 C 102 81.37 1258 reject_low 10 ALIGNMENT 0 Y12-17o07.q1k chr14 658 743 562155 562240 F 86 0.00 1258 reject_low 19 ALIGNMENT 36 Y12-17o07.q1k chr14 862 546 519169 519486 C 317 72.87 1258 reject_low 8 ALIGNMENT 28 Y12-17o07.q1k chr14 744 862 562241 562360 F 119 76.47 1258 reject_low 19 ALIGNMENT 0 Y12-17o07.q1k chr10 609 62 538276 538275 C 548 0.00 1258 reject_low 23 ALIGNMENT 948 Y12-17o07.q1k chr06 1209 17 100232 101424 C 1193 94.64 1258 accept 0 ALIGNMENT 0 Y12-17o07.q1k chr04 545 62 1207017 1207016 C 484 0.00 1258 reject_low 11 ALIGNMENT 0 Y12-17o07.q1k chr07 609 62 817338 817337 C 548 0.00 1258 reject_low 22 ALIGNMENT 0 Y12-17o07.q1k chr15 583 62 970566 970565 C 522 0.00 1258 reject_low 21 ALIGNMENT 0 Y12-17o07.q1k chr04 574 62 1353211 1353210 C 513 0.00 1258 reject_low 10 ALIGNMENT 27 Y12-17o07.q1k chr07 862 744 817084 817203 C 119 76.47 1258 reject_low 22 ALIGNMENT 0 Y12-17o07.q1k chr14 545 62 519487 519486 C 484 0.00 1258 reject_low 8 ALIGNMENT 0 Y12-17o07.q1k chr01 828 73 139154 139153 C 756 0.00 1258 reject_low 3 ALIGNMENT 0 Y12-17o07.q1k chr04 62 556 645519 645518 F 495 0.00 1258 reject_low 14 ALIGNMENT 27 Y12-17o07.q1k chr10 862 744 538022 538141 C 119 76.47 1258 reject_low 23 ALIGNMENT 0 Y12-17o07.q1k chr04 62 556 878320 878319 F 495 0.00 1258 reject_low 15 ALIGNMENT 0 Y12-17o07.q1k chr02 743 62 9218 9217 C 682 0.00 1258 reject_low 16 ALIGNMENT 0 Y12-17o07.q1k chr04 828 677 1353110 1353109 C 152 0.00 1258 reject_low 10 ALIGNMENT 46 Y12-17o07.q1k chr01 72 17 139153 139208 C 56 94.64 1258 reject_low 3 ALIGNMENT 42 Y12-17o07.q1k chr05 546 852 443404 443715 F 307 73.94 1258 reject_low 6 ALIGNMENT 0 Y12-17o07.q1k chr14 658 828 567782 567781 F 171 0.00 1258 reject_low 18 ALIGNMENT 28 Y12-17o07.q1k chr14 744 862 567869 567988 F 119 76.47 1258 reject_low 20 ALIGNMENT 0 Y12-17o07.q1k chr10 743 658 538142 538227 C 86 0.00 1258 reject_low 23 ALIGNMENT 609 Y12-17o07.p1k chr06 62 775 95875 96574 F 714 96.64 1617 accept 0 ALIGNMENT 0 Y12-17o07.q1k chr03 743 62 84193 84192 C 682 0.00 1258 reject_low 17 ALIGNMENT 22 Y12-17o07.q1k chr15 657 584 970493 970565 C 74 79.73 1258 reject_low 21 ALIGNMENT 27 Y12-17o07.q1k chr03 862 744 84073 84192 C 119 76.47 1258 reject_low 17 ALIGNMENT 29 Y12-17o07.q1k chr04 557 862 645519 645825 F 306 72.22 1258 reject_low 14 ALIGNMENT 27 Y12-17o07.q1k chr02 862 744 9098 9217 C 119 76.47 1258 reject_low 16 ALIGNMENT 42 Y12-17o07.q1k chr01 553 852 160257 160561 F 300 74.00 1258 reject_low 7 ALIGNMENT 0 Y12-17o07.q1k chr14 828 80 568110 568109 C 749 0.00 1258 reject_low 2 ALIGNMENT 0 Y12-17o07.q1k chr14 62 609 562107 562106 F 548 0.00 1258 reject_low 19,20 ALIGNMENT 22 Y12-17o07.q1k chr14 610 657 567735 567782 F 48 83.33 1258 reject_low 18 ALIGNMENT 0 Y12-17o07.q1k chr12 552 62 593463 593462 C 491 0.00 1258 reject_low 12 ALIGNMENT 29 Y12-17o07.q1k chr04 557 862 878320 878626 F 306 72.22 1258 reject_low 15 ALIGNMENT 0 Y12-17o07.q1k chr07 743 658 817204 817289 C 86 0.00 1258 reject_low 22 ALIGNMENT 0 Y12-17o07.q1k chr07 62 556 561869 561868 F 495 0.00 1258 reject_low 13 ALIGNMENT 0 Y12-17o07.q1k chr01 62 552 160257 160256 F 491 0.00 1258 reject_low 7 ALIGNMENT 0 Y12-17o07.q1k chr15 828 72 464452 464451 C 757 0.00 1258 reject_low 5 ALIGNMENT 32 Y12-17o07.q1k chr12 852 553 593161 593462 C 300 72.33 1258 reject_low 12 ALIGNMENT 22 Y12-17o07.q1k chr10 657 610 538228 538275 C 48 83.33 1258 reject_low 23 ALIGNMENT 0 Y12-17o07.q1k chr05 62 545 443404 443403 F 484 0.00 1258 reject_low 6 ALIGNMENT 32 Y12-17o07.q1k chr07 557 852 561869 562166 F 296 72.30 1258 reject_low 13 ALIGNMENT 0 Y12-17o07.q1k chr14 828 80 547089 547088 C 749 0.00 1258 reject_low 1 ALIGNMENT 0 Y12-17o07.q1k chr14 62 609 567735 567734 F 548 0.00 1258 reject_low 18 ALIGNMENT 0 Y12-17o07.q1k chr14 545 62 525053 525052 C 484 0.00 1258 reject_low 9 ALIGNMENT 36 Y12-17o07.q1k chr14 862 546 524735 525052 C 317 72.87 1258 reject_low 9 ALIGNMENT 46 Y12-17o07.q1k chr14 79 17 568109 568170 C 63 92.06 1258 reject_low 2 ALIGNMENT 0 Y12-17o07.q1k chr12 828 72 92548 92547 C 757 0.00 1258 reject_low 4 ALIGNMENT 46 Y12-17o07.q1k chr14 79 17 547088 547149 C 63 92.06 1258 reject_low 1 ALIGNMENT 0 Y12-17o07.q1k chr15 743 658 970407 970492 C 86 0.00 1258 reject_low 21 ALIGNMENT 41 Y12-17o07.q1k chr15 71 21 464451 464501 C 51 94.12 1258 reject_low 5 ALIGNMENT 32 Y12-17o07.q1k chr04 852 546 1206708 1207016 C 307 72.31 1258 reject_low 11 ALIGNMENT 27 Y12-17o07.q1k chr15 862 744 970287 970406 C 119 76.47 1258 reject_low 21 ALIGNMENT 22 Y12-17o07.q1k chr07 657 610 817290 817337 C 48 83.33 1258 reject_low 22 ALIGNMENT 0 Y12-17o07.q1k chr14 658 743 562155 567868 F 86 0.00 1258 reject_low 20 ALIGNMENT 45 Y12-17o07.q1k chr12 71 17 92547 92601 C 55 94.55 1258 reject_low 4 ALIGNMENT 22 Y12-17o07.q1k chr14 610 657 562107 562154 F 48 83.33 1258 reject_low 19,20 ALIGNMENT 916 Y12-17o08.q1k chr12 32 1092 466252 467310 F 1061 96.61 1336 reject_low 1 ALIGNMENT 240 Y12-17o08.p1k chr12 372 32 451419 451780 C 341 91.79 1404 reject_low 3 ALIGNMENT 574 Y12-17o08.p1k chr12 982 33 459924 460916 C 950 89.05 1404 accept 0 ALIGNMENT 0 Y12-17o08.p1k chr12 642 373 451420 451419 C 270 0.00 1404 reject_low 3 ALIGNMENT 916 Y12-17o08.q1k chr12 32 1092 457115 458173 F 1061 96.61 1336 accept 0 ALIGNMENT 264 Y12-17o08.p1k chr12 398 32 460530 460917 C 367 92.37 1404 reject_low 2 ALIGNMENT 0 Y12-17o08.p1k chr12 642 399 460531 460530 C 244 0.00 1404 reject_low 2 ALIGNMENT 946 Y12-17o09.q1k chr07 1177 18 569318 570482 C 1160 95.52 1257 ambiguous_trans 3 ALIGNMENT 946 Y12-17o09.q1k chr07 18 1177 815673 816837 F 1160 95.52 1257 ambiguous_trans 4 ALIGNMENT 934 Y12-17o09.q1k chr12 18 1177 945410 946574 F 1160 95.17 1257 ambiguous_trans 7 ALIGNMENT 711 Y12-17o09.p1k chr09 118 980 322244 323092 F 863 95.94 1376 accept 0 ALIGNMENT 635 Y12-17o09.q1k chr12 712 18 976780 977475 C 695 98.71 1257 ambiguous_trans 24 ALIGNMENT 916 Y12-17o09.q1k chr04 18 1177 876037 877201 F 1160 94.66 1257 ambiguous_trans 11 ALIGNMENT 925 Y12-17o09.q1k chr15 1177 18 704638 705802 C 1160 94.91 1257 ambiguous_trans 9 ALIGNMENT 940 Y12-17o09.q1k chr14 1177 18 562607 563771 C 1160 95.34 1257 ambiguous_trans 5 ALIGNMENT 756 Y12-17o09.q1k chr14 19 1177 523325 524488 F 1159 90.08 1257 ambiguous_trans 14 ALIGNMENT 846 Y12-17o09.q1k chr04 18 1086 985386 986461 F 1069 94.76 1257 ambiguous_trans 12 ALIGNMENT 672 Y12-17o09.q1k chr13 19 1086 188347 189421 F 1068 89.42 1257 ambiguous_trans 20 ALIGNMENT 934 Y12-17o09.q1k chr04 1177 18 514258 515422 C 1160 95.17 1257 ambiguous_trans 6 ALIGNMENT 672 Y12-17o09.q1k chr16 19 1086 848594 849668 F 1068 89.42 1257 ambiguous_trans 21 ALIGNMENT 20 Y12-17o09.q1k chr10 1206 1256 477753 477803 F 51 82.35 1257 ambiguous_trans 18 ALIGNMENT 0 Y12-17o09.q1k chr10 1087 1205 477635 477752 F 119 0.00 1257 ambiguous_trans 18 ALIGNMENT 443 Y12-17o09.q1k chr10 19 998 482144 483124 F 980 83.37 1257 ambiguous_trans 25 ALIGNMENT 946 Y12-17o09.q1k chr06 18 1177 142129 143293 F 1160 95.52 1257 ambiguous_trans 2 ALIGNMENT 685 Y12-17o09.q1k chr01 1086 27 160906 161971 C 1060 89.91 1257 ambiguous_trans 19 ALIGNMENT 749 Y12-17o09.q1k chr04 1177 27 878873 880027 C 1151 90.01 1257 ambiguous_trans 15 ALIGNMENT 763 Y12-17o09.q1k chr04 1172 19 646077 647235 C 1154 90.38 1257 ambiguous_trans 13 ALIGNMENT 707 Y12-17o09.q1k chr16 1177 27 805216 806370 C 1151 88.79 1257 ambiguous_trans 17 ALIGNMENT 0 Y12-17o09.q1k chr12 835 713 976781 976780 C 123 0.00 1257 ambiguous_trans 24 ALIGNMENT 919 Y12-17o09.q1k chr02 18 1177 33862 35026 F 1160 94.74 1257 ambiguous_trans 10 ALIGNMENT 639 Y12-17o09.q1k chr13 19 1086 200514 201588 F 1068 88.39 1257 ambiguous_trans 23 ALIGNMENT 661 Y12-17o09.q1k chr16 1086 27 851293 852358 C 1060 89.15 1257 ambiguous_trans 22 ALIGNMENT 696 Y12-17o09.q1k chr10 19 1086 476560 477634 F 1068 90.07 1257 ambiguous_trans 18 ALIGNMENT 946 Y12-17o09.q1k chr03 18 1177 89031 90195 F 1160 95.52 1257 ambiguous_trans 1 ALIGNMENT 928 Y12-17o09.q1k chr15 18 1177 974503 975667 F 1160 95.00 1257 ambiguous_trans 8 ALIGNMENT 711 Y12-17o09.q1k chr07 1177 19 562422 563585 C 1159 88.78 1257 ambiguous_trans 16 ALIGNMENT 968 Y12-17o10.q1k chr05 1243 30 561803 563016 C 1214 94.40 1264 accept 0 ALIGNMENT 852 Y12-17o10.p1k chr05 1 1053 558501 559567 F 1053 95.25 1187 accept 0 ALIGNMENT 0 Y12-17o11.q1k chr07 130 765 556677 556676 F 636 0.00 1218 reject_low 1 ALIGNMENT 916 Y12-17o11.q1k chr12 18 1092 820031 821088 F 1075 96.93 1218 accept 0 ALIGNMENT 86 Y12-17o11.q1k chr07 18 129 556565 556677 F 112 92.86 1218 reject_low 1 ALIGNMENT 835 Y12-17o11.p1k chr12 889 16 823477 824352 C 874 99.43 1209 accept 0 ALIGNMENT 22 Y12-17o12.q1k chr13 642 621 874607 874628 C 22 100.00 1209 reject_low 2 ALIGNMENT 0 Y12-17o12.q1k chr13 620 62 874629 874628 C 559 0.00 1209 reject_low 2 ALIGNMENT 904 Y12-17o12.p1k chr13 1086 1 877567 878640 C 1086 96.32 1170 accept 0 ALIGNMENT 943 Y12-17o12.q1k chr13 35 1197 874017 875179 F 1163 94.75 1209 accept 0 ALIGNMENT 252 Y12-17o12.q1k chr15 35 361 160274 160600 F 327 92.35 1209 reject_low 1 ALIGNMENT 0 Y12-17o12.q1k chr13 767 643 874608 874607 C 125 0.00 1209 reject_low 2 ALIGNMENT 0 Y12-17o12.q1k chr15 362 767 160600 160599 F 406 0.00 1209 reject_low 1 ALIGNMENT 760 Y12-17o13.p1k chr12 952 67 577303 578180 C 886 96.95 1403 accept 0 ALIGNMENT 968 Y12-17o13.q1k chr12 33 1272 572956 574196 F 1240 94.03 1288 accept 0 ALIGNMENT 958 Y12-17o14.q1k chr16 27 1193 351963 353152 F 1167 95.72 1266 accept 0 ALIGNMENT 909 Y12-17o14.p1k chr16 1114 1 355619 356713 C 1114 95.78 1298 accept 0 ALIGNMENT 792 Y12-17o15.p1k chr16 45 1064 615081 616083 F 1020 94.80 1361 accept 0 ALIGNMENT 966 Y12-17o15.q1k chr16 1268 32 618360 619601 C 1237 94.50 1271 accept 0 ALIGNMENT 0 Y12-17o16.p1k chr15 258 131 340374 340373 C 128 0.00 1345 reject_low 2 ALIGNMENT 0 Y12-17o16.p1k chr04 793 125 992304 992303 C 669 0.00 1345 reject_low 11 ALIGNMENT 0 Y12-17o16.p1k chr04 793 103 883903 883902 C 691 0.00 1345 reject_low 17 ALIGNMENT 0 Y12-17o16.p1k chr07 793 109 567446 567445 C 685 0.00 1345 reject_low 13 ALIGNMENT 34 Y12-17o16.p1k chr10 56 108 478235 478284 F 53 94.34 1345 reject_low 14 ALIGNMENT 0 Y12-17o16.p1k chr15 125 793 123627 123626 F 669 0.00 1345 reject_low 12 ALIGNMENT 84 Y12-17o16.p1k chr15 348 259 340284 340373 C 90 97.78 1345 reject_low 2 ALIGNMENT 966 Y12-17o16.q1k chr04 32 1256 616122 617345 F 1225 94.37 1280 accept 0 ALIGNMENT 0 Y12-17o16.p1k chr15 793 126 980255 980254 C 668 0.00 1345 reject_low 9 ALIGNMENT 0 Y12-17o16.p1k chr10 335 793 233929 233928 F 459 0.00 1345 reject_low 5 ALIGNMENT 0 Y12-17o16.p1k chr03 103 793 169519 169518 F 691 0.00 1345 reject_low 16 ALIGNMENT 37 Y12-17o16.p1k chr14 56 127 525000 525066 F 72 91.67 1345 reject_low 7 ALIGNMENT 73 Y12-17o16.p1k chr10 256 334 233851 233929 F 79 97.47 1345 reject_low 5 ALIGNMENT 74 Y12-17o16.p1k chr05 341 261 492338 492419 C 81 97.53 1345 reject_low 4 ALIGNMENT 0 Y12-17o16.p1k chr12 131 248 374344 374343 F 118 0.00 1345 reject_low 1 ALIGNMENT 35 Y12-17o16.p1k chr15 56 124 123564 123627 F 69 91.30 1345 reject_low 12 ALIGNMENT 36 Y12-17o16.p1k chr15 125 56 980254 980318 C 70 91.43 1345 reject_low 9 ALIGNMENT 0 Y12-17o16.p1k chr12 108 793 651144 651143 F 686 0.00 1345 reject_low 15 ALIGNMENT 34 Y12-17o16.p1k chr07 108 56 567445 567494 C 53 94.34 1345 reject_low 13 ALIGNMENT 0 Y12-17o16.p1k chr14 128 793 525066 525065 F 666 0.00 1345 reject_low 7 ALIGNMENT 0 Y12-17o16.p1k chr10 109 793 478284 478283 F 685 0.00 1345 reject_low 14 ALIGNMENT 33 Y12-17o16.p1k chr12 56 107 651096 651144 F 52 94.23 1345 reject_low 15 ALIGNMENT 0 Y12-17o16.p1k chr10 131 255 233851 233850 F 125 0.00 1345 reject_low 5 ALIGNMENT 35 Y12-17o16.p1k chr01 124 56 165827 165890 C 69 91.30 1345 reject_low 10 ALIGNMENT 0 Y12-17o16.p1k chr05 260 131 492420 492419 C 130 0.00 1345 reject_low 4 ALIGNMENT 0 Y12-17o16.p1k chr11 131 255 490606 490605 F 125 0.00 1345 reject_low 3 ALIGNMENT 90 Y12-17o16.p1k chr12 249 341 374344 374436 F 93 98.92 1345 reject_low 1 ALIGNMENT 39 Y12-17o16.p1k chr11 125 56 517094 517158 C 70 92.86 1345 reject_low 6 ALIGNMENT 0 Y12-17o16.p1k chr11 793 126 517095 517094 C 668 0.00 1345 reject_low 6 ALIGNMENT 0 Y12-17o16.p1k chr15 793 349 340285 340284 C 445 0.00 1345 reject_low 2 ALIGNMENT 29 Y12-17o16.p1k chr04 102 56 883902 883945 C 47 93.62 1345 reject_low 17 ALIGNMENT 0 Y12-17o16.p1k chr14 793 127 96609 96608 C 667 0.00 1345 reject_low 8 ALIGNMENT 37 Y12-17o16.p1k chr14 126 56 96608 96673 C 71 91.55 1345 reject_low 8 ALIGNMENT 0 Y12-17o16.p1k chr08 793 103 543631 543630 C 691 0.00 1345 reject_low 18 ALIGNMENT 0 Y12-17o16.p1k chr11 342 793 490691 490690 F 452 0.00 1345 reject_low 3 ALIGNMENT 29 Y12-17o16.p1k chr03 56 102 169476 169519 F 47 93.62 1345 reject_low 16 ALIGNMENT 0 Y12-17o16.p1k chr01 793 125 165828 165827 C 669 0.00 1345 reject_low 10 ALIGNMENT 29 Y12-17o16.p1k chr15 56 102 600671 600714 F 47 93.62 1345 reject_low 19 ALIGNMENT 29 Y12-17o16.p1k chr08 102 56 543630 543673 C 47 93.62 1345 reject_low 18 ALIGNMENT 0 Y12-17o16.p1k chr15 103 793 600714 600713 F 691 0.00 1345 reject_low 19 ALIGNMENT 0 Y12-17o16.p1k chr12 342 793 374436 374435 F 452 0.00 1345 reject_low 1 ALIGNMENT 83 Y12-17o16.p1k chr11 256 341 490606 490691 F 86 98.84 1345 reject_low 3 ALIGNMENT 799 Y12-17o16.p1k chr04 1204 125 619092 620172 C 1080 92.87 1345 accept 0 ALIGNMENT 0 Y12-17o16.p1k chr05 793 342 492339 492338 C 452 0.00 1345 reject_low 4 ALIGNMENT 35 Y12-17o16.p1k chr04 124 56 992303 992366 C 69 91.30 1345 reject_low 11 ALIGNMENT 0 Y12-17o17.p1k chr06 187 92 66274 66273 C 96 0.00 1273 reject_low 13 ALIGNMENT 0 Y12-17o17.p1k chr11 92 212 561409 561408 F 121 0.00 1273 reject_low 15 ALIGNMENT 28 Y12-17o17.p1k chr15 187 248 427988 428049 F 62 85.48 1273 reject_low 6 ALIGNMENT 32 Y12-17o17.p1k chr15 249 204 227289 227334 C 46 93.48 1273 reject_low 5 ALIGNMENT 0 Y12-17o17.p1k chr15 203 92 227335 227334 C 112 0.00 1273 reject_low 5 ALIGNMENT 0 Y12-17o17.p1k chr16 92 183 187315 187314 F 92 0.00 1273 reject_low 3 ALIGNMENT 0 Y12-17o17.p1k chr16 92 180 187372 187371 F 89 0.00 1273 reject_low 8 ALIGNMENT 0 Y12-17o17.p1k chr07 207 92 394501 394500 C 116 0.00 1273 reject_low 14 ALIGNMENT 0 Y12-17o17.p1k chr08 250 702 365430 365429 F 453 0.00 1273 reject_low 4 ALIGNMENT 0 Y12-17o17.p1k chr16 249 702 187379 187378 F 454 0.00 1273 reject_low 3 ALIGNMENT 0 Y12-17o17.p1k chr07 702 246 394464 394463 C 457 0.00 1273 reject_low 14 ALIGNMENT 20 Y12-17o17.p1k chr06 250 221 92722 92751 C 30 93.33 1273 reject_low 10 ALIGNMENT 20 Y12-17o17.p1k chr06 232 188 66229 66273 C 45 84.44 1273 reject_low 13 ALIGNMENT 695 Y12-17o17.p1k chr04 900 29 603596 604444 C 872 95.41 1273 accept 0 ALIGNMENT 0 Y12-17o17.p1k chr15 249 702 428049 428048 F 454 0.00 1273 reject_low 6 ALIGNMENT 31 Y12-17o17.p1k chr15 181 239 427907 427965 F 59 88.14 1273 reject_low 2 ALIGNMENT 0 Y12-17o17.p1k chr15 92 209 63055 63054 F 118 0.00 1273 reject_low 7 ALIGNMENT 0 Y12-17o17.p1k chr15 92 186 427988 427987 F 95 0.00 1273 reject_low 6 ALIGNMENT 22 Y12-17o17.p1k chr16 181 235 187372 187426 F 55 83.64 1273 reject_low 8 ALIGNMENT 25 Y12-17o17.p1k chr13 246 211 354193 354228 C 36 94.44 1273 reject_low 12 ALIGNMENT 40 Y12-17o17.p1k chr07 180 249 529984 530053 F 70 90.00 1273 reject_low 1 ALIGNMENT 0 Y12-17o17.p1k chr13 195 92 248177 248176 C 104 0.00 1273 reject_low 9 ALIGNMENT 0 Y12-17o17.p1k chr02 243 702 272563 272562 F 460 0.00 1273 reject_low 11 ALIGNMENT 25 Y12-17o17.p1k chr02 202 242 272523 272563 F 41 90.24 1273 reject_low 11 ALIGNMENT 0 Y12-17o17.p1k chr06 702 233 66230 66229 C 470 0.00 1273 reject_low 13 ALIGNMENT 30 Y12-17o17.p1k chr15 210 249 63055 63094 F 40 95.00 1273 reject_low 7 ALIGNMENT 0 Y12-17o17.p1k chr13 702 246 248128 248127 C 457 0.00 1273 reject_low 9 ALIGNMENT 30 Y12-17o17.p1k chr16 184 248 187315 187379 F 65 86.15 1273 reject_low 3 ALIGNMENT 28 Y12-17o17.p1k chr08 181 249 365362 365430 F 69 84.06 1273 reject_low 4 ALIGNMENT 0 Y12-17o17.p1k chr08 92 180 365362 365361 F 89 0.00 1273 reject_low 4 ALIGNMENT 22 Y12-17o17.p1k chr07 245 208 394463 394500 C 38 89.47 1273 reject_low 14 ALIGNMENT 0 Y12-17o17.p1k chr13 702 247 354194 354193 C 456 0.00 1273 reject_low 12 ALIGNMENT 0 Y12-17o17.p1k chr11 237 702 561432 561431 F 466 0.00 1273 reject_low 15 ALIGNMENT 0 Y12-17o17.p1k chr15 702 250 227290 227289 C 453 0.00 1273 reject_low 5 ALIGNMENT 0 Y12-17o17.p1k chr06 702 251 92723 92722 C 452 0.00 1273 reject_low 10 ALIGNMENT 0 Y12-17o17.p1k chr16 236 702 187426 187425 F 467 0.00 1273 reject_low 8 ALIGNMENT 0 Y12-17o17.p1k chr15 240 702 427965 427964 F 463 0.00 1273 reject_low 2 ALIGNMENT 0 Y12-17o17.p1k chr02 92 201 272523 272522 F 110 0.00 1273 reject_low 11 ALIGNMENT 0 Y12-17o17.p1k chr06 220 92 92752 92751 C 129 0.00 1273 reject_low 10 ALIGNMENT 26 Y12-17o17.p1k chr13 245 196 248127 248176 C 50 88.00 1273 reject_low 9 ALIGNMENT 0 Y12-17o17.p1k chr07 92 179 529984 529983 F 88 0.00 1273 reject_low 1 ALIGNMENT 0 Y12-17o17.p1k chr15 250 702 63094 63093 F 453 0.00 1273 reject_low 7 ALIGNMENT 0 Y12-17o17.p1k chr13 210 92 354229 354228 C 119 0.00 1273 reject_low 12 ALIGNMENT 943 Y12-17o17.q1k chr04 1 1129 599555 600680 F 1129 95.57 1129 accept 0 ALIGNMENT 0 Y12-17o17.p1k chr07 250 702 530053 530052 F 453 0.00 1273 reject_low 1 ALIGNMENT 0 Y12-17o17.p1k chr15 92 180 427907 427906 F 89 0.00 1273 reject_low 2 ALIGNMENT 22 Y12-17o17.p1k chr11 213 236 561409 561432 F 24 100.00 1273 reject_low 15 ALIGNMENT 703 Y12-17o18.p1k chr12 859 4 467579 468420 C 856 96.50 1204 accept 1 ALIGNMENT 945 Y12-17o18.q1k chr12 28 1092 464317 465379 F 1065 97.09 1196 accept 1 ALIGNMENT 945 Y12-17o18.q1k chr12 28 1092 455180 456242 F 1065 97.09 1196 accept 0 ALIGNMENT 703 Y12-17o18.p1k chr12 859 4 458442 459283 C 856 96.50 1204 accept 0 ALIGNMENT 903 Y12-17o19.q1k chr10 29 1035 625007 626000 F 1007 97.72 1187 accept 0 ALIGNMENT 708 Y12-17o19.p1k chr10 986 114 629502 630355 C 873 96.11 1350 accept 0 ALIGNMENT 915 Y12-17o21.q1k chr10 33 1072 151575 152605 F 1040 97.31 1160 accept 0 ALIGNMENT 772 Y12-17o21.p1k chr10 948 19 154651 155560 C 930 96.45 1216 accept 0 ALIGNMENT 22 Y12-17o22.q1k chr16 373 412 881773 881812 F 40 87.50 1164 reject_low 19 ALIGNMENT 0 Y12-17o22.q1k chr10 784 428 197463 197462 C 357 0.00 1164 reject_low 3 ALIGNMENT 735 Y12-17o22.p1k chr10 4 869 199577 200429 F 866 97.69 1192 reject_low 1 ALIGNMENT 46 Y12-17o22.q1k chr06 249 56 144325 144518 C 194 77.84 1164 reject_low 18 ALIGNMENT 0 Y12-17o22.q1k chr13 427 784 808906 808905 F 358 0.00 1164 reject_low 14 ALIGNMENT 340 Y12-17o22.q1k chr16 55 425 442739 443109 F 371 98.65 1164 reject_low 11 ALIGNMENT 0 Y12-17o22.q1k chr14 784 427 96451 96450 C 358 0.00 1164 reject_low 17 ALIGNMENT 338 Y12-17o22.q1k chr14 54 425 632120 632491 F 372 98.39 1164 reject_low 10 ALIGNMENT 335 Y12-17o22.q1k chr05 54 425 354355 354726 F 372 98.12 1164 reject_low 12 ALIGNMENT 0 Y12-17o22.q1k chr14 426 784 632491 632490 F 359 0.00 1164 reject_low 10 ALIGNMENT 0 Y12-17o22.q1k chr15 137 138 704061 710026 C 0 0.00 1164 reject_low 20 ALIGNMENT 712 Y12-17o22.p1k chr08 4 861 87645 88490 F 858 96.97 1192 accept_trans 0 ALIGNMENT 60 Y12-17o22.q1k chr15 139 54 710025 710109 C 86 94.19 1164|2,0 reject_low 20 ALIGNMENT 0 Y12-17o22.q1k chr16 62 372 881773 881772 F 311 0.00 1164 reject_low 19 ALIGNMENT 0 Y12-17o22.q1k chr06 784 250 144326 144325 C 535 0.00 1164 reject_low 18 ALIGNMENT 0 Y12-17o22.q1k chr04 784 427 437146 437145 C 358 0.00 1164 reject_low 15 ALIGNMENT 0 Y12-17o22.q1k chr09 426 784 197020 197019 F 359 0.00 1164 reject_low 5 ALIGNMENT 352 Y12-17o22.q1k chr13 425 55 503770 504140 C 371 99.73 1164 reject_low 6 ALIGNMENT 0 Y12-17o22.q1k chr16 426 784 443109 443108 F 359 0.00 1164 reject_low 11 ALIGNMENT 341 Y12-17o22.q1k chr14 425 54 561608 561979 C 372 98.66 1164 reject_low 8 ALIGNMENT 343 Y12-17o22.q1k chr08 425 55 85535 85905 C 371 98.92 1164 reject_low 9 ALIGNMENT 712 Y12-17o22.p1k chr16 861 4 440155 441000 C 858 96.97 1192 reject_low 2 ALIGNMENT 0 Y12-17o22.q1k chr02 426 784 36218 36217 F 359 0.00 1164 reject_low 4 ALIGNMENT 344 Y12-17o22.q1k chr07 426 55 110858 111229 C 372 98.92 1164 reject_low 7 ALIGNMENT 0 Y12-17o22.q1k chr13 784 426 503771 503770 C 359 0.00 1164 reject_low 6 ALIGNMENT 149 Y12-17o22.q1k chr14 426 267 96450 96609 C 160 98.75 1164 reject_low 17 ALIGNMENT 0 Y12-17o22.q1k chr14 784 426 561609 561608 C 359 0.00 1164 reject_low 8 ALIGNMENT 854 Y12-17o22.q1k chr10 1017 55 202735 203689 C 963 98.55 1164 reject_low 1 ALIGNMENT 330 Y12-17o22.q1k chr13 55 426 808536 808906 F 372 97.85 1164 reject_low 14 ALIGNMENT 335 Y12-17o22.q1k chr02 55 426 643483 643854 F 372 98.12 1164 reject_low 13 ALIGNMENT 311 Y12-17o22.q1k chr07 55 425 931174 931543 F 371 96.23 1164 reject_low 16 ALIGNMENT 268 Y12-17o22.q1k chr15 425 135 703773 704063 C 291 98.63 1164|0,3 reject_low 20 ALIGNMENT 315 Y12-17o22.q1k chr04 426 55 437145 437515 C 372 96.51 1164 reject_low 15 ALIGNMENT 0 Y12-17o22.q1k chr07 784 427 110859 110858 C 358 0.00 1164 reject_low 7 ALIGNMENT 0 Y12-17o22.q1k chr16 413 784 881812 881811 F 372 0.00 1164 reject_low 19 ALIGNMENT 0 Y12-17o22.q1k chr02 427 784 643854 643853 F 358 0.00 1164 reject_low 13 ALIGNMENT 0 Y12-17o22.q1k chr05 426 784 354726 354725 F 359 0.00 1164 reject_low 12 ALIGNMENT 0 Y12-17o22.q1k chr07 426 784 931543 931542 F 359 0.00 1164 reject_low 16 ALIGNMENT 0 Y12-17o22.q1k chr08 784 426 85536 85535 C 359 0.00 1164 reject_low 9 ALIGNMENT 0 Y12-17o22.q1k chr14 266 62 96610 96609 C 205 0.00 1164 reject_low 17 ALIGNMENT 352 Y12-17o22.q1k chr09 55 425 196650 197020 F 371 99.73 1164 reject_low 5 ALIGNMENT 0 Y12-17o22.q1k chr15 784 426 703774 703773 C 359 0.00 1164 reject_low 20 ALIGNMENT 839 Y12-17o22.q1k chr16 55 1017 436887 437841 F 963 98.03 1164 reject_low 2 ALIGNMENT 353 Y12-17o22.q1k chr02 54 425 35847 36218 F 372 99.73 1164 reject_low 4 ALIGNMENT 354 Y12-17o22.q1k chr10 427 55 197462 197834 C 373 99.73 1164 reject_low 3 ALIGNMENT 838 Y12-17o22.q1k chr08 1086 55 90745 91757 C 1032 96.61 1164 accept_trans 0 ALIGNMENT 868 Y12-17o23.p1k chr14 1 1048 32026 33066 F 1048 95.80 1079 accept 0 ALIGNMENT 965 Y12-17o23.q1k chr14 1075 31 35060 36095 C 1045 98.09 1185 accept 0 ALIGNMENT 886 Y12-17o24.q1k chr08 29 1018 396083 397063 F 990 97.98 1217 accept 0 ALIGNMENT 768 Y12-17o24.p1k chr08 984 55 400304 401214 C 930 96.34 1340 accept 0 ALIGNMENT 934 Y12-17p03.p1k chr12 3 1115 461531 462634 F 1113 95.51 1184 accept 1 ALIGNMENT 0 Y12-17p03.p1k chr12 185 650 490543 490542 F 466 0.00 1184 reject_low 2 ALIGNMENT 881 Y12-17p03.q1k chr12 1062 12 457187 458227 C 1051 96.10 1280 accept 0 ALIGNMENT 934 Y12-17p03.p1k chr12 3 1115 452394 453497 F 1113 95.51 1184 accept 0 ALIGNMENT 881 Y12-17p03.q1k chr12 1062 12 466324 467364 C 1051 96.10 1280 accept 1 ALIGNMENT 175 Y12-17p03.p1k chr12 3 184 490362 490543 F 182 98.90 1184 reject_low 2 ALIGNMENT 279 Y12-17p05.p1k chr04 157 757 471199 471793 F 601 83.36 1400 accept 0 ALIGNMENT 539 Y12-17p05.q1k chr04 863 3 474139 474988 C 861 90.36 1154 accept 0 ALIGNMENT 755 Y12-17p06.q1k chr15 1 984 981109 982082 F 984 94.61 1192 accept 0 ALIGNMENT 508 Y12-17p07.q1k chr13 44 818 774752 775518 F 775 89.94 1346 accept 0 ALIGNMENT 457 Y12-17p07.p1k chr13 805 170 778083 778700 C 636 93.87 1426 accept 0 ALIGNMENT 816 Y12-17p08.p1k chr04 31 1015 1430586 1431551 F 985 96.14 1377 accept 0 ALIGNMENT 836 Y12-17p08.q1k chr04 962 1 1434777 1435737 C 962 96.67 1186 accept 0 ALIGNMENT 0 Y12-17p09.p1k chr05 491 456 95263 95289 C 36 0.00 1143 reject_low 6 ALIGNMENT 171 Y12-17p09.p1k chr01 4 721 140404 141112 F 718 76.32 1143 reject_low 2 ALIGNMENT 784 Y12-17p09.p1k chr04 973 4 44144 45113 C 970 94.54 1143 reject_low 1 ALIGNMENT 156 Y12-17p09.p1k chr12 71 721 96520 97163 F 651 76.19 1143 reject_low 3 ALIGNMENT 839 Y12-17p09.q1k chr14 4 1061 248947 249991 F 1058 95.18 1266 accept 0 ALIGNMENT 0 Y12-17p09.p1k chr05 421 62 95324 95323 C 360 0.00 1143 reject_low 6 ALIGNMENT 36 Y12-17p09.p1k chr05 629 492 95125 95262 C 138 75.36 1143 reject_low 6 ALIGNMENT 61 Y12-17p09.p1k chr10 698 343 381730 382079 C 356 73.88 1143 reject_low 4 ALIGNMENT 20 Y12-17p09.p1k chr05 455 422 95290 95323 C 34 91.18 1143 reject_low 6 ALIGNMENT 0 Y12-17p09.p1k chr10 342 62 382080 382079 C 281 0.00 1143 reject_low 4 ALIGNMENT 0 Y12-17p09.p1k chr10 62 330 520737 520736 F 269 0.00 1143 reject_low 5 ALIGNMENT 52 Y12-17p09.p1k chr10 331 615 520737 521012 F 285 74.74 1143 reject_low 5 ALIGNMENT 822 Y12-17p09.p1k chr14 982 4 252129 253107 C 979 95.61 1143 accept 0 ALIGNMENT 812 Y12-17p10.p1k chr02 30 986 376093 377037 F 957 96.66 1374 accept 0 ALIGNMENT 810 Y12-17p10.q1k chr02 1031 2 378033 379050 C 1030 94.37 1160 accept 0 ALIGNMENT 911 Y12-17p12.q1k chr04 24 1117 760674 761755 F 1094 96.62 1216 accept 0 ALIGNMENT 904 Y12-17p12.p1k chr04 1079 1 764500 765565 C 1079 96.29 1219 accept 0 ALIGNMENT 810 Y12-17p13.p1k chr07 1 934 483159 484078 F 934 96.90 1293 accept 0 ALIGNMENT 882 Y12-17p13.q1k chr07 1086 2 488088 489171 C 1085 95.02 1195 accept 0 ALIGNMENT 707 Y12-17p14.p1k chr12 1050 41 313938 314924 C 1010 92.48 1396 accept 0 ALIGNMENT 756 Y12-17p14.q1k chr12 52 1099 310854 311878 F 1048 93.03 1394 accept 0 ALIGNMENT 565 Y12-17p15.q1k chr10 59 873 685826 686614 F 815 93.13 1573 accept 0 ALIGNMENT 540 Y12-17p17.p1k chr09 867 93 346108 346856 C 775 92.90 1346 accept 0 ALIGNMENT 652 Y12-17p17.q1k chr09 65 868 342719 343501 F 804 95.90 1379 accept 0 ALIGNMENT 760 Y12-17p18.q1k chr12 2 975 880400 881354 F 974 94.76 1125 accept 0 ALIGNMENT 811 Y12-17p18.p1k chr12 985 44 883881 884810 C 942 96.82 1302 accept 0 ALIGNMENT 756 Y12-17p21.p1k chr10 46 947 98132 99025 F 902 95.90 1267 accept 0 ALIGNMENT 717 Y12-17p21.q1k chr10 910 4 102038 102920 C 907 96.03 1091 accept 0 ALIGNMENT 851 Y12-17p22.q1k chr05 928 17 322863 323766 C 912 98.90 1223 accept 0 ALIGNMENT 772 Y12-17p22.p1k chr05 4 857 317069 317912 F 854 98.13 1205 accept 0 ALIGNMENT 529 Y12-17p22.q1k chr09 17 823 221403 222208 F 807 89.10 1223 reject_low 1 ALIGNMENT 0 Y12-17p23.q1k chr02 151 39 516998 517079 C 113 0.00 1279 accept 0 ALIGNMENT 30 Y12-17p23.q1k chr02 38 1 517080 517116 C 38 94.74 1279 accept 0 ALIGNMENT 362 Y12-17p23.q1k chr02 800 152 516370 516997 C 649 87.98 1279 accept 0 ALIGNMENT 507 Y12-17p23.p1k chr02 58 923 513062 513903 F 866 88.91 1340 accept 0 ALIGNMENT 673 Y12-17p24.q1k chr04 893 49 897602 898435 C 845 96.09 1293 accept_chi 0 ALIGNMENT 464 Y12-17p24.p1k chr12 44 773 699489 700212 F 730 90.41 1412 accept_chi 1 ALIGNMENT 41 Y12-18a03.p1k chr07 592 211 565739 566119 C 382 71.47 1456 reject_low 80 ALIGNMENT 0 Y12-18a03.p1k chr10 191 229 479629 479628 F 39 0.00 1456 reject_low 83 ALIGNMENT 0 Y12-18a03.q1k chr09 253 62 197486 197485 C 192 0.00 1363 reject_low 34 ALIGNMENT 231 Y12-18a03.q1k chr16 254 588 560478 560810 F 335 92.54 1363 reject_low 19 ALIGNMENT 0 Y12-18a03.q1k chr08 111 658 549638 549637 F 548 0.00 1363 reject_low 41 ALIGNMENT 563 Y12-18a03.p1k chr15 24 970 971726 972666 F 947 88.07 1456 reject_low 2 ALIGNMENT 0 Y12-18a03.q1k chr06 110 658 162129 162128 F 549 0.00 1363 reject_low 43 ALIGNMENT 56 Y12-18a03.q1k chr01 254 587 189420 189751 F 334 76.35 1363 reject_low 39 ALIGNMENT 0 Y12-18a03.q1k chr15 62 838 980281 980280 F 777 0.00 1363 reject_low 62 ALIGNMENT 24 Y12-18a03.q1k chr12 637 595 220684 220726 C 43 88.37 1363 reject_low 38 ALIGNMENT 225 Y12-18a03.q1k chr07 254 587 931691 932022 F 334 91.92 1363 reject_low 21 ALIGNMENT 0 Y12-18a03.q1k chr16 62 253 560478 560477 F 192 0.00 1363 reject_low 19 ALIGNMENT 0 Y12-18a03.q1k chr07 658 110 931692 931691 C 549 0.00 1363 reject_low 45 ALIGNMENT 23 Y12-18a03.q1k chr07 907 839 931927 931996 C 69 81.16 1363 reject_low 57 ALIGNMENT 554 Y12-18a03.p1k chr04 24 897 873260 874133 F 874 89.02 1456 reject_low 8 ALIGNMENT 0 Y12-18a03.q1k chr02 588 658 221373 221372 F 71 0.00 1363 reject_low 18 ALIGNMENT 22 Y12-18a03.q1k chr11 49 109 458054 458114 F 61 81.97 1363 reject_low 46 ALIGNMENT 20 Y12-18a03.q1k chr14 109 82 102549 102576 C 28 92.86 1363 reject_low 69,70 ALIGNMENT 215 Y12-18a03.q1k chr02 250 587 221035 221373 F 338 90.83 1363 reject_low 18 ALIGNMENT 0 Y12-18a03.q1k chr13 62 252 189751 189750 F 191 0.00 1363 reject_low 24 ALIGNMENT 23 Y12-18a03.q1k chr16 839 907 856239 856308 F 69 81.16 1363 reject_low 64 ALIGNMENT 64 Y12-18a03.q1k chr01 1033 827 189534 189737 C 207 79.71 1363 reject_low 14 ALIGNMENT 0 Y12-18a03.q1k chr07 838 62 541664 541663 C 777 0.00 1363 reject_low 56 ALIGNMENT 55 Y12-18a03.q1k chr06 109 49 137908 137968 C 61 100.00 1363 reject_low 28 ALIGNMENT 0 Y12-18a03.q1k chr06 62 305 158408 158407 F 244 0.00 1363 reject_low 73 ALIGNMENT 49 Y12-18a03.q1k chr01 49 109 160515 160575 F 61 96.72 1363 reject_low 72 ALIGNMENT 0 Y12-18a03.q1k chr07 658 110 541353 541352 C 549 0.00 1363 reject_low 44 ALIGNMENT 221 Y12-18a03.q1k chr13 253 567 189751 190063 F 315 93.02 1363 reject_low 24 ALIGNMENT 0 Y12-18a03.q1k chr06 815 62 143864 143863 C 754 0.00 1363 reject_low 1 ALIGNMENT 0 Y12-18a03.q1k chr06 815 110 138237 143534 C 706 0.00 1363 reject_low 15 ALIGNMENT 23 Y12-18a03.q1k chr13 907 839 189988 190057 C 69 81.16 1363 reject_low 60 ALIGNMENT 23 Y12-18a03.q1k chr01 839 907 160265 160334 F 69 81.16 1363 reject_low 54 ALIGNMENT 27 Y12-18a03.q1k chr12 637 595 215096 215138 C 43 90.70 1363 reject_low 71 ALIGNMENT 0 Y12-18a03.q1k chr14 110 838 96942 102217 F 729 0.00 1363 reject_low 76 ALIGNMENT 0 Y12-18a03.q1k chr01 62 838 160265 160264 F 777 0.00 1363 reject_low 54 ALIGNMENT 23 Y12-18a03.q1k chr08 839 907 543636 543705 F 69 81.16 1363 reject_low 58 ALIGNMENT 20 Y12-18a03.q1k chr08 839 907 549332 549401 F 69 79.71 1363 reject_low 77 ALIGNMENT 0 Y12-18a03.q1k chr02 838 62 221348 221347 C 777 0.00 1363 reject_low 52 ALIGNMENT 24 Y12-18a03.q1k chr06 827 907 161812 161893 F 81 80.25 1363 reject_low 73 ALIGNMENT 0 Y12-18a03.q1k chr14 284 658 102578 102577 F 375 0.00 1363 reject_low 81 ALIGNMENT 22 Y12-18a03.q1k chr01 109 49 183136 183196 C 61 81.97 1363 reject_low 42 ALIGNMENT 84 Y12-18a03.q1k chr06 1035 816 143647 143863 C 220 81.82 1363 reject_low 1 ALIGNMENT 0 Y12-18a03.p1k chr07 633 593 565698 565738 C 41 0.00 1456 reject_low 80 ALIGNMENT 0 Y12-18a03.q1k chr16 110 658 856550 856549 F 549 0.00 1363 reject_low 51 ALIGNMENT 23 Y12-18a03.q1k chr15 839 907 980281 980350 F 69 81.16 1363 reject_low 62 ALIGNMENT 0 Y12-18a03.q1k chr13 110 838 357336 362611 F 729 0.00 1363 reject_low 74 ALIGNMENT 0 Y12-18a03.q1k chr12 252 62 215420 215419 C 191 0.00 1363 reject_low 30 ALIGNMENT 0 Y12-18a03.q1k chr01 826 62 189738 189737 C 765 0.00 1363 reject_low 14 ALIGNMENT 22 Y12-18a03.q1k chr14 49 109 96881 96941 F 61 81.97 1363 reject_low 76 ALIGNMENT 22 Y12-18a03.q1k chr14 49 109 102463 102523 F 61 81.97 1363 reject_low 81 ALIGNMENT 216 Y12-18a03.q1k chr11 588 254 457782 458114 C 335 91.04 1363 reject_low 25 ALIGNMENT 27 Y12-18a03.q1k chr08 637 595 543625 543667 C 43 90.70 1363 reject_low 68 ALIGNMENT 0 Y12-18a03.q1k chr01 658 110 189421 189420 C 549 0.00 1363 reject_low 29 ALIGNMENT 22 Y12-18a03.q1k chr06 49 109 162069 162129 F 61 81.97 1363 reject_low 43 ALIGNMENT 0 Y12-18a03.p1k chr01 229 191 164497 164496 C 39 0.00 1456 reject_low 72 ALIGNMENT 21 Y12-18a03.q1k chr13 839 921 362612 362695 F 83 79.52 1363 reject_low 74 ALIGNMENT 549 Y12-18a03.p1k chr15 865 28 707738 708574 C 838 89.74 1456 reject_low 13 ALIGNMENT 0 Y12-18a03.q1k chr01 167 253 182963 183135 F 87 0.00 1363 reject_low 22 ALIGNMENT 40 Y12-18a03.p1k chr10 230 592 479629 479990 F 363 71.63 1456 reject_low 83 ALIGNMENT 22 Y12-18a03.q1k chr07 109 49 931691 931751 C 61 81.97 1363 reject_low 45 ALIGNMENT 55 Y12-18a03.q1k chr06 109 49 143535 143595 C 61 100.00 1363 reject_low 15 ALIGNMENT 0 Y12-18a03.q1k chr16 594 62 856271 856270 C 533 0.00 1363 reject_low 35 ALIGNMENT 185 Y12-18a03.q1k chr01 254 588 183136 183469 F 335 88.06 1363 reject_low 22 ALIGNMENT 43 Y12-18a03.p1k chr16 230 592 58119 58480 F 363 71.90 1456 reject_low 79 ALIGNMENT 22 Y12-18a03.q1k chr12 49 109 215358 215418 F 61 81.97 1363 reject_low 75 ALIGNMENT 0 Y12-18a03.p1k chr07 210 191 566120 566119 C 20 0.00 1456 reject_low 80 ALIGNMENT 0 Y12-18a03.q1k chr13 658 588 362587 362586 C 71 0.00 1363 reject_low 20 ALIGNMENT 23 Y12-18a03.q1k chr08 49 110 549577 549638 F 62 82.26 1363 reject_low 41 ALIGNMENT 49 Y12-18a03.q1k chr01 49 109 166103 166163 F 61 96.72 1363 reject_low 31 ALIGNMENT 0 Y12-18a03.q1k chr13 110 658 362917 362916 F 549 0.00 1363 reject_low 49 ALIGNMENT 216 Y12-18a03.q1k chr15 588 254 980254 980586 C 335 91.04 1363 reject_low 2 ALIGNMENT 0 Y12-18a03.p1k chr04 229 191 990973 990972 C 39 0.00 1456 reject_low 82 ALIGNMENT 0 Y12-18a03.q1k chr14 658 588 102193 102192 C 71 0.00 1363 reject_low 70 ALIGNMENT 0 Y12-18a03.q1k chr13 658 110 189753 189752 C 549 0.00 1363 reject_low 48 ALIGNMENT 0 Y12-18a03.p1k chr04 633 593 990570 990610 C 41 0.00 1456 reject_low 82 ALIGNMENT 0 Y12-18a03.q1k chr08 594 568 543668 549325 C 27 0.00 1363 reject_low 68 ALIGNMENT 21 Y12-18a03.q1k chr13 839 921 357030 357113 F 83 79.52 1363 reject_low 53 ALIGNMENT 208 Y12-18a03.q1k chr16 587 254 856213 856550 C 334 90.42 1363 reject_low 27 ALIGNMENT 0 Y12-18a03.q1k chr14 658 590 96609 96608 C 69 0.00 1363 reject_low 69 ALIGNMENT 0 Y12-18a03.q1k chr07 62 252 541351 541350 F 191 0.00 1363 reject_low 26 ALIGNMENT 0 Y12-18a03.q1k chr11 62 838 457809 457808 F 777 0.00 1363 reject_low 66 ALIGNMENT 0 Y12-18a03.q1k chr13 568 658 190063 190062 F 91 0.00 1363 reject_low 24 ALIGNMENT 231 Y12-18a03.q1k chr13 590 253 357001 357336 C 338 92.31 1363 reject_low 17 ALIGNMENT 228 Y12-18a03.q1k chr13 587 253 362586 362918 C 335 92.24 1363 reject_low 20 ALIGNMENT 30 Y12-18a03.q1k chr16 641 595 856224 856270 C 47 91.49 1363 reject_low 35 ALIGNMENT 650 Y12-18a03.q1k chr09 109 812 324684 325386 F 704 99.01 1363 accept 0 ALIGNMENT 0 Y12-18a03.q1k chr06 253 62 162130 162129 C 192 0.00 1363 reject_low 16 ALIGNMENT 52 Y12-18a03.q1k chr01 109 49 189420 189480 C 61 98.36 1363 reject_low 29 ALIGNMENT 208 Y12-18a03.q1k chr07 253 587 541351 541689 F 335 90.45 1363 reject_low 26 ALIGNMENT 0 Y12-18a03.q1k chr08 594 62 549364 549363 C 533 0.00 1363 reject_low 36 ALIGNMENT 0 Y12-18a03.q1k chr13 252 62 357337 357336 C 191 0.00 1363 reject_low 17 ALIGNMENT 0 Y12-18a03.q1k chr12 658 638 220685 220684 C 21 0.00 1363 reject_low 38 ALIGNMENT 0 Y12-18a03.q1k chr11 253 62 458115 458114 C 192 0.00 1363 reject_low 25 ALIGNMENT 0 Y12-18a03.q1k chr11 658 589 457783 457782 C 70 0.00 1363 reject_low 25 ALIGNMENT 0 Y12-18a03.q1k chr01 167 253 182963 189419 F 87 0.00 1363 reject_low 39 ALIGNMENT 0 Y12-18a03.q1k chr01 658 110 183137 183136 C 549 0.00 1363 reject_low 42 ALIGNMENT 52 Y12-18a03.q1k chr06 253 577 137907 138229 F 325 76.31 1363 reject_low 67 ALIGNMENT 0 Y12-18a03.q1k chr01 589 658 183469 183468 F 70 0.00 1363 reject_low 22 ALIGNMENT 0 Y12-18a03.q1k chr07 588 658 541689 541688 F 71 0.00 1363 reject_low 26 ALIGNMENT 0 Y12-18a03.q1k chr06 578 658 138229 138228 F 81 0.00 1363 reject_low 67 ALIGNMENT 564 Y12-18a03.p1k chr04 865 28 517358 518194 C 838 90.33 1456 reject_low 9 ALIGNMENT 0 Y12-18a03.q1k chr16 589 658 560810 560809 F 70 0.00 1363 reject_low 19 ALIGNMENT 0 Y12-18a03.q1k chr01 110 658 160575 160574 F 549 0.00 1363 reject_low 72 ALIGNMENT 22 Y12-18a03.p1k chr01 674 634 164053 164093 C 41 85.37 1456 reject_low 72 ALIGNMENT 0 Y12-18a03.q1k chr12 594 568 215139 220688 C 27 0.00 1363 reject_low 71 ALIGNMENT 23 Y12-18a03.q1k chr16 907 839 560714 560783 C 69 81.16 1363 reject_low 63 ALIGNMENT 0 Y12-18a03.q1k chr08 658 638 549322 549321 C 21 0.00 1363 reject_low 36 ALIGNMENT 0 Y12-18a03.q1k chr06 598 658 143947 143946 F 61 0.00 1363 reject_low 78 ALIGNMENT 0 Y12-18a03.q1k chr14 110 252 102524 102547 F 143 0.00 1363 reject_low 81 ALIGNMENT 21 Y12-18a03.q1k chr11 839 905 457809 457876 F 67 80.60 1363 reject_low 66 ALIGNMENT 23 Y12-18a03.q1k chr02 111 49 221038 221100 C 63 82.54 1363 reject_low 40 ALIGNMENT 0 Y12-18a03.q1k chr13 838 62 190058 190057 C 777 0.00 1363 reject_low 60 ALIGNMENT 40 Y12-18a03.p1k chr01 592 230 164135 164496 C 363 71.63 1456 reject_low 72 ALIGNMENT 0 Y12-18a03.q1k chr08 110 838 543942 549331 F 729 0.00 1363 reject_low 77 ALIGNMENT 0 Y12-18a03.q1k chr06 518 517 137906 143869 F 0 0.00 1363 reject_low 78 ALIGNMENT 0 Y12-18a03.q1k chr01 588 658 189751 189750 F 71 0.00 1363 reject_low 39 ALIGNMENT 0 Y12-18a03.q1k chr02 62 249 221035 221034 F 188 0.00 1363 reject_low 18 ALIGNMENT 0 Y12-18a03.q1k chr12 62 838 215107 215106 F 777 0.00 1363 reject_low 59 ALIGNMENT 27 Y12-18a03.q1k chr13 595 637 190026 190068 F 43 90.70 1363 reject_low 37 ALIGNMENT 0 Y12-18a03.q1k chr01 62 838 165853 165852 F 777 0.00 1363 reject_low 55 ALIGNMENT 0 Y12-18a03.q1k chr12 110 838 215419 220694 F 729 0.00 1363 reject_low 75 ALIGNMENT 22 Y12-18a03.p1k chr16 634 674 58522 58562 F 41 85.37 1456 reject_low 79 ALIGNMENT 0 Y12-18a03.q1k chr13 62 594 190026 190025 F 533 0.00 1363 reject_low 37 ALIGNMENT 138 Y12-18a03.q1k chr09 586 254 197137 197485 C 333 83.78 1363 reject_low 34 ALIGNMENT 0 Y12-18a03.q1k chr01 252 62 160577 160576 C 191 0.00 1363 reject_low 32 ALIGNMENT 50 Y12-18a03.q1k chr06 253 632 143534 143917 F 380 75.79 1363 reject_low 65 ALIGNMENT 221 Y12-18a03.q1k chr08 567 253 543630 543942 C 315 93.02 1363 reject_low 23 ALIGNMENT 22 Y12-18a03.q1k chr13 109 49 189752 189812 C 61 81.97 1363 reject_low 48 ALIGNMENT 569 Y12-18a03.p1k chr14 897 28 565675 566543 C 870 89.66 1456 reject_low 7 ALIGNMENT 0 Y12-18a03.q1k chr06 567 826 158664 161811 F 260 0.00 1363 reject_low 73 ALIGNMENT 0 Y12-18a03.q1k chr01 253 62 166164 166163 C 192 0.00 1363 reject_low 33 ALIGNMENT 90 Y12-18a03.q1k chr06 322 519 137719 137907 F 198 86.36 1363|0,2 reject_low 78 ALIGNMENT 0 Y12-18a03.q1k chr06 62 321 137719 137718 F 260 0.00 1363 reject_low 78 ALIGNMENT 0 Y12-18a03.q1k chr16 658 642 856225 856224 C 17 0.00 1363 reject_low 35 ALIGNMENT 0 Y12-18a03.q1k chr14 252 110 96943 102548 C 143 0.00 1363 reject_low 69 ALIGNMENT 23 Y12-18a03.q1k chr14 839 907 96636 96705 F 69 81.16 1363 reject_low 61 ALIGNMENT 149 Y12-18a03.q1k chr01 587 254 165827 166163 C 334 84.73 1363 reject_low 33 ALIGNMENT 0 Y12-18a03.q1k chr16 253 62 856551 856550 C 192 0.00 1363 reject_low 27 ALIGNMENT 0 Y12-18a03.q1k chr02 658 112 221039 221038 C 547 0.00 1363 reject_low 40 ALIGNMENT 0 Y12-18a03.q1k chr12 658 638 215097 215096 C 21 0.00 1363 reject_low 71 ALIGNMENT 40 Y12-18a03.p1k chr04 592 230 990611 990972 C 363 71.63 1456 reject_low 82 ALIGNMENT 0 Y12-18a03.q1k chr16 658 110 560479 560478 C 549 0.00 1363 reject_low 50 ALIGNMENT 0 Y12-18a03.q1k chr16 658 588 856214 856213 C 71 0.00 1363 reject_low 27 ALIGNMENT 23 Y12-18a03.q1k chr14 839 907 102218 102287 F 69 81.16 1363 reject_low 76 ALIGNMENT 36 Y12-18a03.q1k chr06 515 597 143867 143947 F 83 86.75 1363|3,0 reject_low 78 ALIGNMENT 0 Y12-18a03.q1k chr06 658 642 161748 161747 C 17 0.00 1363 reject_low 16 ALIGNMENT 0 Y12-18a03.q1k chr12 110 658 221006 221005 F 549 0.00 1363 reject_low 47 ALIGNMENT 22 Y12-18a03.p1k chr07 674 634 565657 565697 C 41 85.37 1456 reject_low 80 ALIGNMENT 0 Y12-18a03.q1k chr13 638 658 190068 190067 F 21 0.00 1363 reject_low 37 ALIGNMENT 22 Y12-18a03.p1k chr04 674 634 990529 990569 C 41 85.37 1456 reject_low 82 ALIGNMENT 0 Y12-18a03.q1k chr09 658 587 197138 197137 C 72 0.00 1363 reject_low 34 ALIGNMENT 43 Y12-18a03.q1k chr01 114 166 182910 182962 F 53 94.34 1363 reject_low 22,39 ALIGNMENT 22 Y12-18a03.q1k chr16 49 109 856490 856550 F 61 81.97 1363 reject_low 51 ALIGNMENT 0 Y12-18a03.q1k chr12 594 62 220727 220726 C 533 0.00 1363 reject_low 38 ALIGNMENT 0 Y12-18a03.q1k chr07 588 658 932022 932021 F 71 0.00 1363 reject_low 21 ALIGNMENT 0 Y12-18a03.q1k chr07 838 62 931997 931996 C 777 0.00 1363 reject_low 57 ALIGNMENT 22 Y12-18a03.q1k chr16 109 49 560478 560538 C 61 81.97 1363 reject_low 50 ALIGNMENT 0 Y12-18a03.q1k chr06 62 252 137907 137906 F 191 0.00 1363 reject_low 67 ALIGNMENT 560 Y12-18a03.p1k chr03 24 865 86254 87095 F 842 90.14 1456 reject_low 10 ALIGNMENT 22 Y12-18a03.q1k chr07 109 49 541352 541412 C 61 81.97 1363 reject_low 44 ALIGNMENT 22 Y12-18a03.q1k chr13 49 109 362857 362917 F 61 81.97 1363 reject_low 49 ALIGNMENT 0 Y12-18a03.q1k chr08 658 568 543631 543630 C 91 0.00 1363 reject_low 23 ALIGNMENT 23 Y12-18a03.q1k chr12 839 907 215107 215176 F 69 81.16 1363 reject_low 59 ALIGNMENT 0 Y12-18a03.q1k chr11 110 658 458114 458113 F 549 0.00 1363 reject_low 46 ALIGNMENT 0 Y12-18a03.q1k chr08 658 638 543626 543625 C 21 0.00 1363 reject_low 68 ALIGNMENT 23 Y12-18a03.q1k chr01 839 907 165853 165922 F 69 81.16 1363 reject_low 55 ALIGNMENT 0 Y12-18a03.p1k chr01 633 593 164094 164134 C 41 0.00 1456 reject_low 72 ALIGNMENT 0 Y12-18a03.q1k chr07 62 253 931691 931690 F 192 0.00 1363 reject_low 21 ALIGNMENT 0 Y12-18a03.q1k chr08 62 838 543636 543635 F 777 0.00 1363 reject_low 58 ALIGNMENT 237 Y12-18a03.q1k chr14 587 254 102192 102523 C 334 93.11 1363 reject_low 70 ALIGNMENT 239 Y12-18a03.q1k chr14 589 253 96608 96942 C 337 93.18 1363 reject_low 69 ALIGNMENT 0 Y12-18a03.q1k chr12 253 62 221007 221006 C 192 0.00 1363 reject_low 71 ALIGNMENT 569 Y12-18a03.p1k chr12 24 897 942633 943506 F 874 89.59 1456 reject_low 6 ALIGNMENT 554 Y12-18a03.p1k chr02 24 865 31085 31926 F 842 89.90 1456 reject_low 11 ALIGNMENT 22 Y12-18a03.q1k chr02 921 839 221262 221347 C 83 79.52 1363 reject_low 52 ALIGNMENT 0 Y12-18a03.q1k chr15 253 62 980587 980586 C 192 0.00 1363 reject_low 2 ALIGNMENT 23 Y12-18a03.q1k chr07 907 839 541594 541663 C 69 81.16 1363 reject_low 56 ALIGNMENT 549 Y12-18a03.p1k chr12 865 28 979411 980247 C 838 89.74 1456 reject_low 12 ALIGNMENT 0 Y12-18a03.q1k chr16 838 62 560784 560783 C 777 0.00 1363 reject_low 63 ALIGNMENT 22 Y12-18a03.q1k chr08 49 109 543881 543941 F 61 81.97 1363 reject_low 77 ALIGNMENT 0 Y12-18a03.q1k chr12 658 568 215102 215101 C 91 0.00 1363 reject_low 30 ALIGNMENT 22 Y12-18a03.q1k chr13 49 109 357275 357335 F 61 81.97 1363 reject_low 74 ALIGNMENT 0 Y12-18a03.q1k chr14 62 838 96636 96635 F 777 0.00 1363 reject_low 61 ALIGNMENT 0 Y12-18a03.q1k chr01 62 113 182910 182909 F 52 0.00 1363 reject_low 22,39 ALIGNMENT 0 Y12-18a03.q1k chr13 658 591 357002 357001 C 68 0.00 1363 reject_low 17 ALIGNMENT 0 Y12-18a03.q1k chr08 253 62 549638 549637 C 192 0.00 1363 reject_low 68 ALIGNMENT 23 Y12-18a03.q1k chr12 839 907 220695 220764 F 69 81.16 1363 reject_low 75 ALIGNMENT 0 Y12-18a03.q1k chr13 252 62 362919 362918 C 191 0.00 1363 reject_low 20 ALIGNMENT 194 Y12-18a03.q1k chr12 567 254 220689 221006 C 314 90.45 1363 reject_low 71 ALIGNMENT 0 Y12-18a03.q1k chr06 658 110 137909 137908 C 549 0.00 1363 reject_low 28 ALIGNMENT 578 Y12-18a03.p1k chr07 970 28 572320 573255 C 943 88.65 1456 reject_low 4 ALIGNMENT 198 Y12-18a03.q1k chr12 567 253 215101 215419 C 315 90.79 1363 reject_low 30 ALIGNMENT 0 Y12-18a03.q1k chr01 658 588 160240 160239 C 71 0.00 1363 reject_low 32 ALIGNMENT 150 Y12-18a03.q1k chr01 587 253 160239 160576 C 335 84.78 1363 reject_low 32 ALIGNMENT 0 Y12-18a03.q1k chr06 633 658 143917 143916 F 26 0.00 1363 reject_low 65 ALIGNMENT 0 Y12-18a03.q1k chr16 62 838 856239 856238 F 777 0.00 1363 reject_low 64 ALIGNMENT 572 Y12-18a03.p1k chr06 24 897 139352 140225 F 874 89.70 1456 reject_low 1 ALIGNMENT 581 Y12-18a03.p1k chr07 24 970 812896 813836 F 947 88.70 1456 reject_low 3 ALIGNMENT 0 Y12-18a03.p1k chr16 593 633 58481 58521 F 41 0.00 1456 reject_low 79 ALIGNMENT 0 Y12-18a03.q1k chr06 62 252 143534 143533 F 191 0.00 1363 reject_low 65 ALIGNMENT 27 Y12-18a03.q1k chr08 637 595 549321 549363 C 43 90.70 1363 reject_low 36 ALIGNMENT 0 Y12-18a03.q1k chr01 658 588 165828 165827 C 71 0.00 1363 reject_low 33 ALIGNMENT 0 Y12-18a03.p1k chr16 191 229 58119 58118 F 39 0.00 1456 reject_low 79 ALIGNMENT 0 Y12-18a03.q1k chr13 62 838 357030 357029 F 777 0.00 1363 reject_low 53 ALIGNMENT 22 Y12-18a03.q1k chr12 49 109 220946 221006 F 61 81.97 1363 reject_low 47 ALIGNMENT 0 Y12-18a03.q1k chr09 62 108 324684 324683 F 47 0.00 1363 accept 0 ALIGNMENT 0 Y12-18a03.q1k chr14 81 62 102577 102576 C 20 0.00 1363 reject_low 69,70 ALIGNMENT 89 Y12-18a03.q1k chr06 306 566 158408 158663 F 261 81.61 1363 reject_low 73 ALIGNMENT 560 Y12-18a03.p1k chr04 24 962 982609 983542 F 939 88.07 1456 reject_low 5 ALIGNMENT 22 Y12-18a03.p1k chr10 634 674 480032 480072 F 41 85.37 1456 reject_low 83 ALIGNMENT 217 Y12-18a03.q1k chr08 567 254 549326 549637 C 314 92.68 1363 reject_low 68 ALIGNMENT 0 Y12-18a03.q1k chr01 110 658 166163 166162 F 549 0.00 1363 reject_low 31 ALIGNMENT 0 Y12-18a03.q1k chr08 252 62 543943 543942 C 191 0.00 1363 reject_low 23 ALIGNMENT 22 Y12-18a03.q1k chr14 253 283 102548 102578 F 31 93.55 1363 reject_low 81 ALIGNMENT 0 Y12-18a03.p1k chr10 593 633 479991 480031 F 41 0.00 1456 reject_low 83 ALIGNMENT 0 Y12-18a03.q1k chr15 658 589 980255 980254 C 70 0.00 1363 reject_low 2 ALIGNMENT 84 Y12-18a03.q1k chr06 1035 816 138020 138236 C 220 81.82 1363 reject_low 15 ALIGNMENT 0 Y12-18a03.q1k chr14 253 110 102524 102548 C 144 0.00 1363 reject_low 70 ALIGNMENT 209 Y12-18a03.q1k chr06 641 254 161747 162129 C 388 87.89 1363 reject_low 16 ALIGNMENT 35 Y12-18a04.q1k vc_7 23 57 13528 13562 F 35 100.00 1380 reject_low 5 ALIGNMENT 35 Y12-18a04.q1k vc_5 57 23 5025 5059 C 35 100.00 1380 reject_low 4 ALIGNMENT 38 Y12-18a04.q1k vc_3 57 15 2472 2514 C 43 95.35 1380 reject_low 2 ALIGNMENT 32 Y12-18a04.q1k vc_5 54 23 1 32 C 32 100.00 1380 reject_low 6 ALIGNMENT 38 Y12-18a04.q1k vc_1 57 15 2472 2514 C 43 95.35 1380 reject_low 1 ALIGNMENT 38 Y12-18a04.q1k vc_4 15 57 5829 5871 F 43 95.35 1380 reject_low 3 ALIGNMENT 324 Y12-18a04.p1k chr13 526 23 517989 518484 C 504 90.28 1431 accept 0 ALIGNMENT 200 Y12-18a04.q1k chr13 77 595 513889 514406 F 519 80.73 1380 accept 0 ALIGNMENT 483 Y12-18a05.p1k chr16 28 766 827916 828644 F 739 90.53 1462 accept 0 ALIGNMENT 919 Y12-18a06.q1k chr08 31 1147 440940 442062 F 1117 95.26 1361 accept 0 ALIGNMENT 870 Y12-18a06.p1k chr08 1060 19 445953 446988 C 1042 96.26 1432 accept 0 ALIGNMENT 920 Y12-18a08.p1k chr04 17 1158 577445 578588 F 1142 95.10 1423 accept 0 ALIGNMENT 938 Y12-18a08.q1k chr04 1239 34 581457 582655 C 1206 93.95 1389 accept 0 ALIGNMENT 921 Y12-18a11.q1k chr13 1229 31 790505 791709 C 1199 93.91 1285 accept 0 ALIGNMENT 872 Y12-18a11.p1k chr13 21 1071 785286 786331 F 1051 96.00 1382 accept 0 ALIGNMENT 744 Y12-18a12.q1k chr16 33 993 313916 314861 F 961 94.48 1397 accept 0 ALIGNMENT 724 Y12-18a13.q1k chr05 33 817 497631 498421 F 785 98.22 1307 ambiguous_trans 6 ALIGNMENT 0 Y12-18a13.q1k chr14 782 62 102579 102578 C 721 0.00 1307 ambiguous_trans_ua 26 ALIGNMENT 598 Y12-18a13.q1k chr01 33 822 165379 166173 F 790 92.91 1307 ambiguous_trans 15 ALIGNMENT 20 Y12-18a13.q1k chr16 812 761 56357 56408 C 52 82.69 1307 ambiguous_trans_ua 27 ALIGNMENT 81 Y12-18a13.q1k chr15 694 565 594630 594759 C 130 90.00 1307 ambiguous_trans_ua 23 ALIGNMENT 690 Y12-18a13.q1k chr16 33 812 855765 856550 F 780 96.92 1307 ambiguous_trans 14 ALIGNMENT 756 Y12-18a13.q1k chr15 813 33 594820 595600 C 781 99.62 1307 ambiguous_trans 3 ALIGNMENT 886 Y12-18a13.p1k chr14 1109 21 634861 635954 C 1089 95.59 1353 accept 0 ALIGNMENT 0 Y12-18a13.q1k chr01 62 500 160259 160258 F 439 0.00 1307 ambiguous_trans 22 ALIGNMENT 727 Y12-18a13.q1k chr04 813 33 1095761 1096547 C 781 98.46 1307 ambiguous_trans 9 ALIGNMENT 729 Y12-18a13.q1k chr16 816 33 844404 845193 C 784 98.47 1307 ambiguous_trans 7 ALIGNMENT 726 Y12-18a13.q1k chr13 33 812 377836 378621 F 780 98.46 1307 ambiguous_trans 10 ALIGNMENT 602 Y12-18a13.q1k chr04 33 812 650633 651414 F 780 93.46 1307 ambiguous_trans 21 ALIGNMENT 0 Y12-18a13.q1k chr15 564 62 594760 594759 C 503 0.00 1307 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-18a13.q1k chr16 760 62 56409 56408 C 699 0.00 1307 ambiguous_trans_ua 27 ALIGNMENT 39 Y12-18a13.q1k chr16 815 770 56406 56451 C 46 97.83 1307 ambiguous_trans_ua 25 ALIGNMENT 747 Y12-18a13.q1k chr08 33 813 548858 549638 F 781 99.23 1307 ambiguous_trans 4 ALIGNMENT 705 Y12-18a13.q1k chr15 812 33 117702 118487 C 780 97.56 1307 ambiguous_trans 11 ALIGNMENT 29 Y12-18a13.q1k chr14 812 783 102549 102578 C 30 100.00 1307 ambiguous_trans_ua 26 ALIGNMENT 746 Y12-18a13.q1k chr13 812 33 184170 184949 C 780 99.23 1307 ambiguous_trans 5 ALIGNMENT 0 Y12-18a13.q1k chr16 769 62 56452 56451 C 708 0.00 1307 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-18a13.q1k chr15 802 695 594631 594630 C 108 0.00 1307 ambiguous_trans_ua 23 ALIGNMENT 696 Y12-18a13.q1k chr10 812 33 472377 473162 C 780 97.18 1307 ambiguous_trans 12 ALIGNMENT 604 Y12-18a13.q1k chr04 33 814 883434 884217 F 782 93.48 1307 ambiguous_trans 20 ALIGNMENT 756 Y12-18a13.q1k chr07 33 813 822532 823312 F 781 99.62 1307 ambiguous_trans 2 ALIGNMENT 622 Y12-18a13.q1k chr05 33 812 448532 449316 F 780 94.10 1307 ambiguous_trans 19 ALIGNMENT 723 Y12-18a13.q1k chr12 33 816 220221 221010 F 784 98.21 1307 ambiguous_trans_ua 8 ALIGNMENT 0 Y12-18a13.q1k chr05 802 762 449347 449346 C 41 0.00 1307 ambiguous_trans_ua 24 ALIGNMENT 672 Y12-18a13.q1k chr07 812 33 535764 536549 C 780 96.28 1307 ambiguous_trans 16 ALIGNMENT 755 Y12-18a13.q1k chr02 815 33 259573 260355 C 783 99.49 1307 ambiguous_trans 1 ALIGNMENT 695 Y12-18a13.q1k chr14 33 812 101744 102523 F 780 97.18 1307 ambiguous_trans 13 ALIGNMENT 51 Y12-18a13.q1k chr05 761 655 449346 449452 C 107 85.98 1307 ambiguous_trans_ua 24 ALIGNMENT 624 Y12-18a13.q1k chr16 814 33 56450 57236 C 782 94.12 1307 ambiguous_trans 18 ALIGNMENT 629 Y12-18a13.q1k chr13 813 33 196331 197116 C 781 94.37 1307 ambiguous_trans 17 ALIGNMENT 0 Y12-18a13.q1k chr05 654 62 449453 449452 C 593 0.00 1307 ambiguous_trans_ua 24 ALIGNMENT 189 Y12-18a13.q1k chr01 501 812 160259 160575 F 312 89.42 1307 ambiguous_trans 22 ALIGNMENT 532 Y12-18a14.p1k chr11 97 876 637296 638074 F 780 90.90 1408 accept 0 ALIGNMENT 1029 Y12-18a15.q1k chr03 1242 32 275326 276537 C 1211 95.79 1276 accept 0 ALIGNMENT 912 Y12-18a15.p1k chr03 19 1161 272482 273637 F 1143 95.45 1357 accept 0 ALIGNMENT 549 Y12-18a16.q1k chr12 35 766 453166 453895 F 732 92.35 1436 manual 0 ALIGNMENT 673 Y12-18a16.p1k chr12 938 37 466033 466931 C 902 92.57 1406 manual 1 ALIGNMENT 543 Y12-18a16.q1k chr12 35 750 462303 463016 F 716 92.60 1436 manual 1 ALIGNMENT 673 Y12-18a16.p1k chr12 938 37 456896 457794 C 902 92.57 1406 manual 0 ALIGNMENT 1028 Y12-18a19.q1k chr11 35 1237 365813 367015 F 1203 96.18 1287 accept 0 ALIGNMENT 973 Y12-18a19.p1k chr11 1178 19 369969 371140 C 1160 95.78 1333 accept 0 ALIGNMENT 336 Y12-18a20.q1k chr12 835 172 533717 534371 C 664 84.94 1494 accept 0 ALIGNMENT 154 Y12-18a21.q1k chr12 457 830 96349 96722 F 374 80.75 1237 reject_low 2 ALIGNMENT 0 Y12-18a21.q1k chr01 62 456 140298 140297 F 395 0.00 1237 reject_low 3 ALIGNMENT 45 Y12-18a21.q1k chr10 596 463 382383 382516 C 134 79.10 1237 reject_low 4 ALIGNMENT 902 Y12-18a21.q1k chr14 1037 13 252633 253657 C 1025 96.59 1237 accept 0 ALIGNMENT 0 Y12-18a21.q1k chr10 712 597 382384 382383 C 116 0.00 1237 reject_low 4 ALIGNMENT 0 Y12-18a21.q1k chr12 62 456 96349 96348 F 395 0.00 1237 reject_low 2 ALIGNMENT 0 Y12-18a21.q1k chr10 462 62 382517 382516 C 401 0.00 1237 reject_low 4 ALIGNMENT 866 Y12-18a21.p1k chr14 23 1082 248792 249836 F 1060 95.85 1377 accept 0 ALIGNMENT 148 Y12-18a21.q1k chr01 457 830 140298 140671 F 374 80.21 1237 reject_low 3 ALIGNMENT 854 Y12-18a21.q1k chr04 1037 16 44639 45660 C 1022 95.21 1237 reject_low 1 ALIGNMENT 1088 Y12-18b01.p1k chr07 1243 23 1052619 1053846 C 1221 97.22 1395 accept 0 ALIGNMENT 1002 Y12-18b01.q1k chr07 29 1145 1050274 1051392 F 1117 97.22 1343 accept 0 ALIGNMENT 890 Y12-18b02.q1k chr06 33 1150 155640 156746 F 1118 94.81 1350 accept 0 ALIGNMENT 682 Y12-18b02.p1k chr06 897 20 159378 160248 C 878 94.19 1388 accept 0 ALIGNMENT 681 Y12-18b03.q1k chr12 826 34 110209 110997 C 793 95.84 1409 accept 0 ALIGNMENT 652 Y12-18b04.q1k chr07 967 49 604526 605434 C 919 92.38 1422 accept 0 ALIGNMENT 724 Y12-18b04.p1k chr07 16 955 601536 602465 F 940 94.57 1472 accept 0 ALIGNMENT 0 Y12-18b05.q1k chr07 252 923 531693 531692 F 672 0.00 1375 reject_low 6 ALIGNMENT 0 Y12-18b05.q1k chr12 62 171 427133 427132 F 110 0.00 1375 reject_low 14 ALIGNMENT 0 Y12-18b05.q1k chr12 62 171 793918 793917 F 110 0.00 1375 reject_low 13 ALIGNMENT 83 Y12-18b05.q1k chr10 251 167 374332 374416 C 85 100.00 1375 reject_low 3 ALIGNMENT 0 Y12-18b05.q1k chr04 252 923 569040 569039 F 672 0.00 1375 reject_low 4 ALIGNMENT 0 Y12-18b05.q1k chr09 923 252 336339 336338 C 672 0.00 1375 reject_low 8 ALIGNMENT 0 Y12-18b05.q1k chr02 62 166 405949 405948 F 105 0.00 1375 reject_low 1 ALIGNMENT 78 Y12-18b05.q1k chr10 172 251 204652 204731 F 80 100.00 1375 reject_low 9 ALIGNMENT 0 Y12-18b05.q1k chr10 62 171 204652 204651 F 110 0.00 1375 reject_low 9 ALIGNMENT 77 Y12-18b05.q1k chr07 170 251 531612 531693 F 82 98.78 1375 reject_low 6 ALIGNMENT 0 Y12-18b05.q1k chr13 252 923 463632 463631 F 672 0.00 1375 reject_low 11 ALIGNMENT 0 Y12-18b05.q1k chr15 62 171 571958 571957 F 110 0.00 1375 reject_low 12 ALIGNMENT 0 Y12-18b05.q1k chr09 923 252 324294 324293 C 672 0.00 1375 reject_low 5 ALIGNMENT 937 Y12-18b05.p1k chr07 22 1097 532598 533697 F 1076 97.21 1309 accept 0 ALIGNMENT 78 Y12-18b05.q1k chr09 251 172 336338 336417 C 80 100.00 1375 reject_low 8 ALIGNMENT 0 Y12-18b05.q1k chr10 62 166 355367 355366 F 105 0.00 1375 reject_low 2 ALIGNMENT 0 Y12-18b05.q1k chr12 252 923 427212 427211 F 672 0.00 1375 reject_low 14 ALIGNMENT 0 Y12-18b05.q1k chr10 252 923 355451 355450 F 672 0.00 1375 reject_low 2 ALIGNMENT 77 Y12-18b05.q1k chr12 172 249 793918 793995 F 78 100.00 1375 reject_low 13 ALIGNMENT 0 Y12-18b05.q1k chr15 252 923 572037 572036 F 672 0.00 1375 reject_low 12 ALIGNMENT 0 Y12-18b05.q1k chr10 252 923 204731 204730 F 672 0.00 1375 reject_low 9 ALIGNMENT 78 Y12-18b05.q1k chr10 172 251 541422 541501 F 80 100.00 1375 reject_low 10 ALIGNMENT 0 Y12-18b05.q1k chr11 170 62 513047 513046 C 109 0.00 1375 reject_low 7 ALIGNMENT 0 Y12-18b05.q1k chr10 166 62 374417 374416 C 105 0.00 1375 reject_low 3 ALIGNMENT 79 Y12-18b05.q1k chr09 251 171 324293 324373 C 81 100.00 1375 reject_low 5 ALIGNMENT 0 Y12-18b05.q1k chr04 62 166 568956 568955 F 105 0.00 1375 reject_low 4 ALIGNMENT 0 Y12-18b05.q1k chr10 923 252 374333 374332 C 672 0.00 1375 reject_low 3 ALIGNMENT 70 Y12-18b05.q1k chr14 250 180 519093 519163 C 71 100.00 1375 reject_low 15 ALIGNMENT 78 Y12-18b05.q1k chr13 172 251 463553 463632 F 80 100.00 1375 reject_low 11 ALIGNMENT 83 Y12-18b05.q1k chr10 167 251 355367 355451 F 85 100.00 1375 reject_low 2 ALIGNMENT 0 Y12-18b05.q1k chr02 252 923 406033 406032 F 672 0.00 1375 reject_low 1 ALIGNMENT 0 Y12-18b05.q1k chr12 250 923 793995 793994 F 674 0.00 1375 reject_low 13 ALIGNMENT 78 Y12-18b05.q1k chr11 250 171 512967 513046 C 80 100.00 1375 reject_low 7 ALIGNMENT 0 Y12-18b05.q1k chr13 62 171 463553 463552 F 110 0.00 1375 reject_low 11 ALIGNMENT 0 Y12-18b05.q1k chr14 179 62 519164 519163 C 118 0.00 1375 reject_low 15 ALIGNMENT 80 Y12-18b05.q1k chr04 167 251 568956 569040 F 85 98.82 1375 reject_low 4 ALIGNMENT 1045 Y12-18b05.q1k chr07 1235 25 543586 544800 C 1211 96.45 1375 accept 0 ALIGNMENT 0 Y12-18b05.q1k chr09 170 62 324374 324373 C 109 0.00 1375 reject_low 5 ALIGNMENT 0 Y12-18b05.q1k chr11 923 251 512968 512967 C 673 0.00 1375 reject_low 7 ALIGNMENT 0 Y12-18b05.q1k chr07 62 169 531612 531611 F 108 0.00 1375 reject_low 6 ALIGNMENT 0 Y12-18b05.q1k chr09 171 62 336418 336417 C 110 0.00 1375 reject_low 8 ALIGNMENT 0 Y12-18b05.q1k chr10 252 923 541501 541500 F 672 0.00 1375 reject_low 10 ALIGNMENT 78 Y12-18b05.q1k chr15 172 251 571958 572037 F 80 100.00 1375 reject_low 12 ALIGNMENT 0 Y12-18b05.q1k chr14 923 251 519094 519093 C 673 0.00 1375 reject_low 15 ALIGNMENT 83 Y12-18b05.q1k chr02 167 251 405949 406033 F 85 100.00 1375 reject_low 1 ALIGNMENT 0 Y12-18b05.q1k chr10 62 171 541422 541421 F 110 0.00 1375 reject_low 10 ALIGNMENT 75 Y12-18b05.q1k chr12 172 251 427133 427212 F 80 98.75 1375 reject_low 14 ALIGNMENT 1020 Y12-18b06.q1k chr04 36 1206 583156 584334 F 1171 97.10 1364 accept 0 ALIGNMENT 943 Y12-18b06.p1k chr04 1134 20 587731 588861 C 1115 96.32 1362 accept 0 ALIGNMENT 1052 Y12-18b07.p1k chr15 18 1260 917507 918761 F 1243 96.06 1378 accept 0 ALIGNMENT 1065 Y12-18b07.q1k chr15 1249 36 921101 922323 C 1214 96.87 1371 accept 0 ALIGNMENT 502 Y12-18b08.p1k chr04 21 716 355099 355795 F 696 92.82 1459 accept 0 ALIGNMENT 826 Y12-18b08.q1k chr04 1092 31 359515 360575 C 1062 93.88 1373 accept 0 ALIGNMENT 50 Y12-18b10.p1k chr04 218 304 410378 410464 F 87 86.21 1565 reject_low 1 ALIGNMENT 959 Y12-18b10.q1k chr13 30 1151 763439 764571 F 1122 97.06 1338 accept 0 ALIGNMENT 48 Y12-18b10.p1k chr11 218 296 219543 219621 F 79 87.34 1565 reject_low 3 ALIGNMENT 46 Y12-18b10.p1k chr06 288 218 204912 204982 C 71 88.73 1565 reject_low 4 ALIGNMENT 48 Y12-18b10.p1k chr10 296 218 197224 197302 C 79 87.34 1565 reject_low 2 ALIGNMENT 170 Y12-18b10.p1k chr13 412 110 768246 768546 C 303 86.47 1565 accept 0 ALIGNMENT 973 Y12-18b11.q1k chr05 36 1129 127480 128585 F 1094 97.35 1335 accept 0 ALIGNMENT 680 Y12-18b12.q1k chr14 41 1063 729204 730226 F 1023 89.44 1317 accept 0 ALIGNMENT 220 Y12-18b12.p1k chr14 539 57 732705 733183 C 483 83.02 1429 accept 0 ALIGNMENT 990 Y12-18b14.p1k chr07 21 1220 217503 218716 F 1200 95.50 1351 accept 0 ALIGNMENT 997 Y12-18b14.q1k chr07 1177 37 222575 223722 C 1141 96.58 1328 accept 0 ALIGNMENT 996 Y12-18b15.q1k chr16 37 1235 867229 868442 F 1199 95.66 1345 accept 0 ALIGNMENT 690 Y12-18b15.p1k chr16 756 22 870551 871285 C 735 98.91 1298 accept 0 ALIGNMENT 353 Y12-18b16.p1k chr07 15 769 217498 218244 F 755 83.58 1363 accept_chi 1 ALIGNMENT 1022 Y12-18b16.q1k chr04 38 1196 326112 327279 F 1159 97.33 1332 accept_chi 0 ALIGNMENT 961 Y12-18b17.p1k chr11 21 1117 441968 443085 F 1097 96.99 1320 accept 0 ALIGNMENT 1045 Y12-18b17.q1k chr11 1249 36 444785 445996 C 1214 95.96 1377 accept 0 ALIGNMENT 0 Y12-18b18.q1k chr04 62 929 1239608 1239607 F 868 0.00 1355 reject_low 1 ALIGNMENT 49 Y12-18b18.q1k chr04 930 1130 1239608 1239816 F 201 75.62 1355 reject_low 1 ALIGNMENT 1044 Y12-18b18.q1k chr15 34 1232 253522 254723 F 1199 96.25 1355 accept 0 ALIGNMENT 0 Y12-18b19.q1k chr15 583 582 220443 220732 F 0 0.00 1299 accept 0 ALIGNMENT 982 Y12-18b19.p1k chr15 1307 19 223317 224623 C 1289 93.25 1358 accept 0 ALIGNMENT 529 Y12-18b19.q1k chr15 38 586 219898 220446 F 549 99.27 1299|0,4 accept 0 ALIGNMENT 423 Y12-18b19.q1k chr15 579 1125 220729 221294 F 547 93.97 1299|4,0 accept 0 ALIGNMENT 972 Y12-18b20.q1k chr05 1157 39 70403 71535 C 1119 96.34 1305 accept_chi 1 ALIGNMENT 1011 Y12-18b20.p1k chr01 19 1261 178094 179347 F 1243 94.93 1353 accept_chi 0 ALIGNMENT 0 Y12-18b21.p1k chr11 525 160 202627 202651 C 366 0.00 1252 reject_low 48 ALIGNMENT 0 Y12-18b21.p1k chr14 592 914 726303 726302 F 323 0.00 1252 reject_low 34 ALIGNMENT 0 Y12-18b21.p1k chr05 914 519 434628 434627 C 396 0.00 1252 reject_low 9 ALIGNMENT 0 Y12-18b21.p1k chr03 651 62 151820 151819 C 590 0.00 1252 reject_low 36 ALIGNMENT 215 Y12-18b21.p1k chr14 952 646 519167 519474 C 307 92.51 1252 reject_low 5 ALIGNMENT 0 Y12-18b21.p1k chr04 914 592 946222 946221 C 323 0.00 1252 reject_low 23 ALIGNMENT 292 Y12-18b21.p1k chr01 1067 646 189301 189728 C 422 91.47 1252 reject_low 1 ALIGNMENT 131 Y12-18b21.p1k chr03 384 521 168929 169066 F 138 100.00 1252 reject_low 28 ALIGNMENT 0 Y12-18b21.p1k chr03 592 914 168452 168451 F 323 0.00 1252 reject_low 22 ALIGNMENT 278 Y12-18b21.p1k chr02 172 518 197706 198057 F 347 94.81 1252 reject_low 4 ALIGNMENT 0 Y12-18b21.p1k chr04 519 914 668431 668430 F 396 0.00 1252 reject_low 11 ALIGNMENT 0 Y12-18b21.p1k chr07 519 914 712549 712548 F 396 0.00 1252 reject_low 10 ALIGNMENT 43 Y12-18b21.p1k chr04 591 526 946221 946286 C 66 90.91 1252 reject_low 23 ALIGNMENT 0 Y12-18b21.p1k chr02 592 914 197785 197784 F 323 0.00 1252 reject_low 30 ALIGNMENT 46 Y12-18b21.p1k chr07 591 526 319697 319762 C 66 92.42 1252 reject_low 21 ALIGNMENT 352 Y12-18b21.p1k chr07 408 18 405231 405623 C 391 97.44 1252 accept 0 ALIGNMENT 0 Y12-18b21.p1k chr03 522 914 169066 169065 F 393 0.00 1252 reject_low 28 ALIGNMENT 265 Y12-18b21.p1k chr09 183 518 205217 205556 F 336 94.64 1252 reject_low 42 ALIGNMENT 0 Y12-18b21.p1k chr07 592 914 707267 707266 F 323 0.00 1252 reject_low 31 ALIGNMENT 0 Y12-18b21.p1k chr02 62 525 197720 197719 F 464 0.00 1252 reject_low 30 ALIGNMENT 0 Y12-18b21.p1k chr09 592 914 205285 205284 F 323 0.00 1252 reject_low 32 ALIGNMENT 0 Y12-18b21.p1k chr07 914 592 319698 319697 C 323 0.00 1252 reject_low 21 ALIGNMENT 156 Y12-18b21.p1k chr01 646 952 160262 160572 F 307 86.64 1252 reject_low 18 ALIGNMENT 40 Y12-18b21.p1k chr07 526 591 707202 707267 F 66 89.39 1252 reject_low 31 ALIGNMENT 0 Y12-18b21.p1k chr02 519 914 198057 198056 F 396 0.00 1252 reject_low 4 ALIGNMENT 156 Y12-18b21.p1k chr01 646 952 165850 166160 F 307 86.64 1252 reject_low 19 ALIGNMENT 834 Y12-18b21.q1k chr07 30 996 398627 399613 F 967 95.97 1181 accept 0 ALIGNMENT 48 Y12-18b21.p1k chr16 804 957 856398 856552 F 154 77.92 1252 reject_low 43 ALIGNMENT 0 Y12-18b21.p1k chr09 592 914 210373 210372 F 323 0.00 1252 reject_low 42 ALIGNMENT 69 Y12-18b21.p1k chr03 646 957 124154 124464 F 312 76.92 1252 reject_low 38 ALIGNMENT 263 Y12-18b21.p1k chr16 193 518 856551 856881 F 326 95.09 1252 reject_low 16 ALIGNMENT 0 Y12-18b21.p1k chr07 62 525 707202 707201 F 464 0.00 1252 reject_low 31 ALIGNMENT 0 Y12-18b21.p1k chr01 645 62 183446 183445 C 584 0.00 1252 reject_low 41 ALIGNMENT 0 Y12-18b21.p1k chr12 62 525 374003 374002 F 464 0.00 1252 reject_low 27 ALIGNMENT 0 Y12-18b21.p1k chr07 62 179 707196 707195 F 118 0.00 1252 reject_low 39 ALIGNMENT 40 Y12-18b21.p1k chr01 526 591 182617 182682 F 66 89.39 1252 reject_low 29 ALIGNMENT 0 Y12-18b21.p1k chr07 519 525 707539 712212 F 7 0.00 1252 reject_low 39 ALIGNMENT 40 Y12-18b21.p1k chr02 526 591 197720 197785 F 66 89.39 1252 reject_low 30 ALIGNMENT 0 Y12-18b21.p1k chr01 62 645 165850 165849 F 584 0.00 1252 reject_low 19 ALIGNMENT 0 Y12-18b21.p1k chr07 592 914 712278 712277 F 323 0.00 1252 reject_low 39 ALIGNMENT 0 Y12-18b21.p1k chr01 62 824 138865 138864 F 763 0.00 1252 reject_low 46 ALIGNMENT 273 Y12-18b21.p1k chr05 521 183 249926 250269 C 339 95.28 1252 reject_low 8 ALIGNMENT 0 Y12-18b21.p1k chr01 62 182 182614 182613 F 121 0.00 1252 reject_low 14 ALIGNMENT 0 Y12-18b21.p1k chr07 814 409 405149 405230 C 406 0.00 1252 accept 0 ALIGNMENT 0 Y12-18b21.p1k chr07 86 62 736425 736424 C 25 0.00 1252 reject_low 3 ALIGNMENT 0 Y12-18b21.p1k chr14 62 525 726238 726237 F 464 0.00 1252 reject_low 34 ALIGNMENT 40 Y12-18b21.p1k chr07 526 591 712213 712278 F 66 89.39 1252 reject_low 39 ALIGNMENT 46 Y12-18b21.p1k chr04 526 591 668094 668159 F 66 92.42 1252 reject_low 20 ALIGNMENT 271 Y12-18b21.p1k chr04 180 518 668088 668431 F 339 94.99 1252 reject_low 11 ALIGNMENT 43 Y12-18b21.p1k chr07 526 591 735990 736055 F 66 90.91 1252 reject_low 26 ALIGNMENT 0 Y12-18b21.p1k chr07 914 169 736344 736343 C 746 0.00 1252 reject_low 3 ALIGNMENT 0 Y12-18b21.p1k chr03 390 645 168596 168617 F 256 0.00 1252 reject_low 33 ALIGNMENT 0 Y12-18b21.p1k chr07 525 62 319763 319762 C 464 0.00 1252 reject_low 21 ALIGNMENT 21 Y12-18b21.p1k chr11 159 105 202652 202707 C 55 80.00 1252 reject_low 47,48 ALIGNMENT 37 Y12-18b21.p1k chr14 526 591 726238 726303 F 66 87.88 1252 reject_low 34 ALIGNMENT 0 Y12-18b21.p1k chr01 645 62 189729 189728 C 584 0.00 1252 reject_low 1 ALIGNMENT 0 Y12-18b21.p1k chr14 645 62 525041 525040 C 584 0.00 1252 reject_low 6 ALIGNMENT 237 Y12-18b21.p1k chr12 633 956 731680 732003 F 324 92.59 1252 reject_low 2 ALIGNMENT 75 Y12-18b21.p1k chr03 952 652 151521 151819 C 301 78.74 1252 reject_low 36 ALIGNMENT 267 Y12-18b21.p1k chr09 178 522 210299 210648 F 345 94.20 1252 reject_low 7 ALIGNMENT 147 Y12-18b21.p1k chr03 185 389 168386 168595 F 205 92.68 1252 reject_low 33 ALIGNMENT 72 Y12-18b21.p1k chr03 912 646 149523 149784 C 267 79.40 1252 reject_low 37 ALIGNMENT 0 Y12-18b21.p1k chr03 645 62 149785 149784 C 584 0.00 1252 reject_low 37 ALIGNMENT 263 Y12-18b21.p1k chr14 183 518 726235 726575 F 336 94.35 1252 reject_low 40 ALIGNMENT 0 Y12-18b21.p1k chr07 182 62 319766 319765 C 121 0.00 1252 reject_low 15 ALIGNMENT 0 Y12-18b21.p1k chr03 62 525 168387 168386 F 464 0.00 1252 reject_low 22 ALIGNMENT 0 Y12-18b21.p1k chr04 592 914 668159 668158 F 323 0.00 1252 reject_low 20 ALIGNMENT 0 Y12-18b21.p1k chr05 182 62 250270 250269 C 121 0.00 1252 reject_low 8 ALIGNMENT 0 Y12-18b21.p1k chr04 914 519 945950 945949 C 396 0.00 1252 reject_low 12 ALIGNMENT 0 Y12-18b21.p1k chr12 62 632 731680 731679 F 571 0.00 1252 reject_low 2 ALIGNMENT 0 Y12-18b21.p1k chr09 523 914 210648 210647 F 392 0.00 1252 reject_low 7 ALIGNMENT 0 Y12-18b21.p1k chr05 914 522 249927 249926 C 393 0.00 1252 reject_low 8 ALIGNMENT 0 Y12-18b21.p1k chr16 62 532 856551 856550 F 471 0.00 1252 reject_low 35 ALIGNMENT 0 Y12-18b21.p1k chr07 519 914 736327 736326 F 396 0.00 1252 reject_low 13 ALIGNMENT 0 Y12-18b21.p1k chr11 181 160 202631 202651 C 22 0.00 1252 reject_low 47 ALIGNMENT 0 Y12-18b21.p1k chr11 914 519 202291 202290 C 396 0.00 1252 reject_low 47 ALIGNMENT 0 Y12-18b21.p1k chr07 893 62 405211 405210 C 832 0.00 1252 reject_low 44 ALIGNMENT 40 Y12-18b21.p1k chr09 526 591 210308 210373 F 66 89.39 1252 reject_low 42 ALIGNMENT 0 Y12-18b21.p1k chr07 62 182 735987 735986 F 121 0.00 1252 reject_low 13 ALIGNMENT 280 Y12-18b21.p1k chr05 518 183 434627 434967 C 336 96.13 1252 reject_low 9 ALIGNMENT 93 Y12-18b21.p1k chr14 646 773 726638 726764 F 128 93.75 1252 reject_low 40 ALIGNMENT 0 Y12-18b21.p1k chr04 62 179 668088 668087 F 118 0.00 1252 reject_low 11 ALIGNMENT 86 Y12-18b21.p1k chr07 920 815 405042 405148 C 106 96.23 1252 accept 0 ALIGNMENT 266 Y12-18b21.p1k chr01 183 519 182614 182954 F 337 94.66 1252 reject_low 14 ALIGNMENT 0 Y12-18b21.p1k chr05 914 592 250202 250201 C 323 0.00 1252 reject_low 24 ALIGNMENT 0 Y12-18b21.p1k chr11 914 592 202562 202561 C 323 0.00 1252 reject_low 48 ALIGNMENT 0 Y12-18b21.p1k chr12 592 914 374068 374067 F 323 0.00 1252 reject_low 27 ALIGNMENT 221 Y12-18b21.p1k chr03 646 952 168618 168925 F 307 93.16 1252 reject_low 33 ALIGNMENT 0 Y12-18b21.p1k chr14 62 182 726235 726234 F 121 0.00 1252 reject_low 40 ALIGNMENT 0 Y12-18b21.p1k chr11 104 62 202708 202707 C 43 0.00 1252 reject_low 47,48 ALIGNMENT 0 Y12-18b21.p1k chr01 62 645 160262 160261 F 584 0.00 1252 reject_low 18 ALIGNMENT 0 Y12-18b21.p1k chr16 62 192 856551 856550 F 131 0.00 1252 reject_low 16 ALIGNMENT 0 Y12-18b21.p1k chr09 62 177 210299 210298 F 116 0.00 1252 reject_low 7 ALIGNMENT 267 Y12-18b21.p1k chr11 518 182 202290 202630 C 337 94.66 1252 reject_low 47 ALIGNMENT 0 Y12-18b21.p1k chr02 62 171 197706 197705 F 110 0.00 1252 reject_low 4 ALIGNMENT 0 Y12-18b21.p1k chr07 592 914 736055 736054 F 323 0.00 1252 reject_low 26 ALIGNMENT 45 Y12-18b21.p1k chr07 952 894 405152 405210 C 59 94.92 1252 reject_low 44 ALIGNMENT 0 Y12-18b21.p1k chr16 519 914 856881 856880 F 396 0.00 1252 reject_low 16 ALIGNMENT 0 Y12-18b21.p1k chr01 62 525 182617 182616 F 464 0.00 1252 reject_low 29 ALIGNMENT 0 Y12-18b21.p1k chr05 525 62 434965 434964 C 464 0.00 1252 reject_low 25 ALIGNMENT 48 Y12-18b21.p1k chr01 952 646 183139 183445 C 307 75.57 1252 reject_low 41 ALIGNMENT 0 Y12-18b21.p1k chr09 519 525 205557 210307 F 7 0.00 1252 reject_low 42 ALIGNMENT 0 Y12-18b21.p1k chr03 62 184 168386 168385 F 123 0.00 1252 reject_low 33 ALIGNMENT 0 Y12-18b21.p1k chr16 62 803 856398 856397 F 742 0.00 1252 reject_low 43 ALIGNMENT 0 Y12-18b21.p1k chr03 62 383 168929 168928 F 322 0.00 1252 reject_low 28 ALIGNMENT 0 Y12-18b21.p1k chr04 62 525 668094 668093 F 464 0.00 1252 reject_low 20 ALIGNMENT 0 Y12-18b21.p1k chr07 914 519 319427 319426 C 396 0.00 1252 reject_low 15 ALIGNMENT 0 Y12-18b21.p1k chr07 62 525 735990 735989 F 464 0.00 1252 reject_low 26 ALIGNMENT 263 Y12-18b21.p1k chr07 518 183 319426 319765 C 336 94.64 1252 reject_low 15 ALIGNMENT 0 Y12-18b21.p1k chr16 592 914 856609 856608 F 323 0.00 1252 reject_low 35 ALIGNMENT 0 Y12-18b21.p1k chr05 914 592 434900 434899 C 323 0.00 1252 reject_low 25 ALIGNMENT 0 Y12-18b21.p1k chr12 62 182 374000 373999 F 121 0.00 1252 reject_low 17 ALIGNMENT 257 Y12-18b21.p1k chr12 183 518 374000 374339 F 336 94.05 1252 reject_low 17 ALIGNMENT 40 Y12-18b21.p1k chr11 591 526 202561 202626 C 66 89.39 1252 reject_low 48 ALIGNMENT 268 Y12-18b21.p1k chr07 180 518 707196 707538 F 339 94.69 1252 reject_low 39 ALIGNMENT 41 Y12-18b21.p1k chr01 825 949 138865 138990 F 125 80.80 1252 reject_low 46 ALIGNMENT 43 Y12-18b21.p1k chr05 591 526 250201 250266 C 66 90.91 1252 reject_low 24 ALIGNMENT 0 Y12-18b21.p1k chr01 520 914 182954 182953 F 395 0.00 1252 reject_low 14 ALIGNMENT 0 Y12-18b21.p1k chr04 525 62 946287 946286 C 464 0.00 1252 reject_low 23 ALIGNMENT 40 Y12-18b21.p1k chr03 674 952 142798 143074 F 279 74.55 1252 reject_low 45 ALIGNMENT 0 Y12-18b21.p1k chr12 519 914 374339 374338 F 396 0.00 1252 reject_low 17 ALIGNMENT 0 Y12-18b21.p1k chr14 645 62 519475 519474 C 584 0.00 1252 reject_low 5 ALIGNMENT 35 Y12-18b21.p1k chr16 533 591 856551 856609 F 59 89.83 1252 reject_low 35 ALIGNMENT 271 Y12-18b21.p1k chr07 183 518 735987 736327 F 336 95.24 1252 reject_low 13 ALIGNMENT 43 Y12-18b21.p1k chr05 591 526 434899 434964 C 66 90.91 1252 reject_low 25 ALIGNMENT 0 Y12-18b21.p1k chr05 525 62 250267 250266 C 464 0.00 1252 reject_low 24 ALIGNMENT 0 Y12-18b21.p1k chr05 182 62 434968 434967 C 121 0.00 1252 reject_low 9 ALIGNMENT 267 Y12-18b21.p1k chr07 178 518 712204 712549 F 341 94.43 1252 reject_low 10 ALIGNMENT 0 Y12-18b21.p1k chr09 62 182 205217 205216 F 121 0.00 1252 reject_low 42 ALIGNMENT 43 Y12-18b21.p1k chr03 526 591 168387 168452 F 66 90.91 1252 reject_low 22 ALIGNMENT 0 Y12-18b21.p1k chr04 181 62 946291 946290 C 120 0.00 1252 reject_low 12 ALIGNMENT 76 Y12-18b21.p1k chr07 168 87 736343 736424 C 82 97.56 1252 reject_low 3 ALIGNMENT 215 Y12-18b21.p1k chr14 952 646 524733 525040 C 307 92.51 1252 reject_low 6 ALIGNMENT 0 Y12-18b21.p1k chr03 62 673 142798 142797 F 612 0.00 1252 reject_low 45 ALIGNMENT 43 Y12-18b21.p1k chr12 526 591 374003 374068 F 66 90.91 1252 reject_low 27 ALIGNMENT 0 Y12-18b21.p1k chr01 592 914 182682 182681 F 323 0.00 1252 reject_low 29 ALIGNMENT 0 Y12-18b21.p1k chr09 62 525 205220 205219 F 464 0.00 1252 reject_low 32 ALIGNMENT 0 Y12-18b21.p1k chr07 62 177 712204 712203 F 116 0.00 1252 reject_low 10 ALIGNMENT 272 Y12-18b21.p1k chr04 518 182 945949 946290 C 337 95.25 1252 reject_low 12 ALIGNMENT 0 Y12-18b21.p1k chr03 62 645 124154 124153 F 584 0.00 1252 reject_low 38 ALIGNMENT 40 Y12-18b21.p1k chr09 526 591 205220 205285 F 66 89.39 1252 reject_low 32 ALIGNMENT 0 Y12-18b21.p1k chr14 774 914 726764 726763 F 141 0.00 1252 reject_low 40 ALIGNMENT 0 Y12-18b21.p1k chr14 519 645 726576 726637 F 127 0.00 1252 reject_low 40 ALIGNMENT 1040 Y12-18b22.q1k chr04 33 1256 738616 739853 F 1224 96.08 1291 accept 0 ALIGNMENT 746 Y12-18b22.p1k chr04 828 18 742311 743116 C 811 98.15 1419 accept 0 ALIGNMENT 162 Y12-18b23.p1k chr07 197 540 712204 712549 F 344 84.88 1440 ambiguous_trans 7 ALIGNMENT 30 Y12-18b23.p1k chr08 608 548 146601 146661 C 61 85.25 1440 ambiguous_trans_ua 26 ALIGNMENT 30 Y12-18b23.p1k chr07 548 608 735990 736050 F 61 85.25 1440 ambiguous_trans_ua 25 ALIGNMENT 46 Y12-18b23.p1k chr07 668 767 817421 817521 F 100 84.00 1440 ambiguous_trans 36 ALIGNMENT 29 Y12-18b23.p1k chr01 548 582 182617 182651 F 35 97.14 1440 ambiguous_trans_ua 28 ALIGNMENT 160 Y12-18b23.p1k chr01 208 541 182620 182954 F 334 85.33 1440 ambiguous_trans_ua 15 ALIGNMENT 464 Y12-18b23.q1k chr04 37 759 1287813 1288539 F 723 88.93 1418 accept_chi 0 ALIGNMENT 131 Y12-18b23.p1k chr01 1015 668 189394 189728 C 348 83.91 1440 ambiguous_trans_ua 2 ALIGNMENT 29 Y12-18b23.p1k chr07 548 582 712213 712247 F 35 97.14 1440 ambiguous_trans 40 ALIGNMENT 164 Y12-18b23.p1k chr07 208 531 735993 736318 F 324 85.80 1440 ambiguous_trans_ua 14 ALIGNMENT 166 Y12-18b23.p1k chr04 540 201 945949 946290 C 340 85.00 1440 ambiguous_trans_ua 12 ALIGNMENT 35 Y12-18b23.p1k chr03 741 668 149710 149784 C 74 85.14 1440 ambiguous_trans_ua 39 ALIGNMENT 160 Y12-18b23.p1k chr16 212 540 856551 856881 F 329 85.41 1440 ambiguous_trans_ua 16 ALIGNMENT 33 Y12-18b23.p1k chr04 548 608 668094 668154 F 61 86.89 1440 ambiguous_trans_ua 21 ALIGNMENT 72 Y12-18b23.p1k chr03 208 408 168390 168593 F 201 81.09 1440 ambiguous_trans_ua 41,42 ALIGNMENT 98 Y12-18b23.p1k chr12 986 668 656413 656722 C 319 81.19 1440 ambiguous_trans 20 ALIGNMENT 0 Y12-18b23.p1k chr03 409 410 168594 168933 F 2 0.00 1440 ambiguous_trans_ua 42 ALIGNMENT 110 Y12-18b23.p1k chr07 986 658 817080 817397 C 329 82.07 1440 ambiguous_trans 6 ALIGNMENT 30 Y12-18b23.p1k chr03 548 608 168387 168447 F 61 85.25 1440 ambiguous_trans_ua 22 ALIGNMENT 27 Y12-18b23.p1k chr02 548 608 197720 197780 F 61 83.61 1440 ambiguous_trans_ua 27 ALIGNMENT 46 Y12-18b23.p1k chr01 668 986 160262 160574 F 319 75.86 1440 ambiguous_trans 34 ALIGNMENT 98 Y12-18b23.p1k chr03 668 986 168618 168927 F 319 81.19 1440 ambiguous_trans_ua 41 ALIGNMENT 0 Y12-18b23.p1k chr07 541 547 707539 712212 F 7 0.00 1440 ambiguous_trans 40 ALIGNMENT 29 Y12-18b23.p1k chr14 548 582 546742 546776 F 35 97.14 1440 ambiguous_trans_ua 32 ALIGNMENT 106 Y12-18b23.p1k chr08 655 986 389190 389511 F 332 81.33 1440 ambiguous_trans_ua 9 ALIGNMENT 29 Y12-18b23.p1k chr07 548 582 707202 707236 F 35 97.14 1440 ambiguous_trans 29 ALIGNMENT 24 Y12-18b23.p1k chr16 556 608 856552 856604 F 53 84.91 1440 ambiguous_trans_ua 33 ALIGNMENT 163 Y12-18b23.p1k chr07 199 540 707196 707538 F 342 85.09 1440 ambiguous_trans 40 ALIGNMENT 159 Y12-18b23.p1k chr09 208 540 205223 205556 F 333 85.29 1440 ambiguous_trans 17 ALIGNMENT 0 Y12-18b23.p1k chr03 409 667 168594 168617 F 259 0.00 1440 ambiguous_trans_ua 41 ALIGNMENT 164 Y12-18b23.p1k chr04 199 540 668088 668431 F 342 84.80 1440 ambiguous_trans_ua 11 ALIGNMENT 44 Y12-18b23.p1k chr03 668 741 124154 124228 F 74 89.19 1440 ambiguous_trans_ua 37 ALIGNMENT 41 Y12-18b23.p1k chr03 767 674 151725 151819 C 94 82.98 1440 ambiguous_trans_ua 38 ALIGNMENT 173 Y12-18b23.p1k chr02 191 540 197706 198057 F 350 85.43 1440 ambiguous_trans_ua 3 ALIGNMENT 29 Y12-18b23.p1k chr09 548 582 205220 205254 F 35 97.14 1440 ambiguous_trans 30 ALIGNMENT 112 Y12-18b23.p1k chr12 655 986 731680 732001 F 332 81.93 1440 ambiguous_trans_ua 5 ALIGNMENT 172 Y12-18b23.p1k chr05 540 208 434627 434961 C 333 86.19 1440 ambiguous_trans_ua 10 ALIGNMENT 105 Y12-18b23.p1k chr12 654 986 976263 976584 F 333 81.38 1440 ambiguous_trans 8 ALIGNMENT 162 Y12-18b23.p1k chr11 540 201 202290 202630 C 340 85.00 1440 ambiguous_trans_ua 13 ALIGNMENT 29 Y12-18b23.p1k chr11 582 548 202592 202626 C 35 97.14 1440 ambiguous_trans_ua 31 ALIGNMENT 46 Y12-18b23.p1k chr01 668 986 165850 166162 F 319 75.86 1440 ambiguous_trans 35 ALIGNMENT 118 Y12-18b23.p1k chr07 986 649 811453 811779 C 338 82.25 1440 ambiguous_trans 4 ALIGNMENT 38 Y12-18b23.p1k chr07 179 115 736350 736411 C 65 89.23 1440 accept_chi 1 ALIGNMENT 157 Y12-18b23.p1k chr08 540 208 146324 146658 C 333 84.68 1440 ambiguous_trans_ua 18 ALIGNMENT 102 Y12-18b23.p1k chr03 411 542 168934 169065 F 132 93.94 1440 ambiguous_trans_ua 42 ALIGNMENT 156 Y12-18b23.p1k chr14 208 540 546745 547078 F 333 84.98 1440 ambiguous_trans_ua 19 ALIGNMENT 30 Y12-18b23.p1k chr04 608 548 946226 946286 C 61 85.25 1440 ambiguous_trans_ua 23 ALIGNMENT 30 Y12-18b23.p1k chr05 608 548 434904 434964 C 61 85.25 1440 ambiguous_trans_ua 24 ALIGNMENT 773 Y12-18b24.p1k chr16 26 994 832922 833878 F 969 95.15 1305 accept 0 ALIGNMENT 870 Y12-18c03.q1k chr07 1137 31 150911 152015 C 1107 94.13 1305 accept 0 ALIGNMENT 507 Y12-18c03.p1k chr07 20 918 147287 148181 F 899 86.87 1413 accept 0 ALIGNMENT 868 Y12-18c04.q1k chr02 1208 3 630962 632150 C 1206 92.95 1395 accept_chi 0 ALIGNMENT 822 Y12-18c04.p1k chr13 25 1038 720021 721034 F 1014 94.67 1419 accept_chi 1 ALIGNMENT 78 Y12-18c05.q1k chr14 31 119 332068 332156 F 89 96.63 1340 reject_low 1 ALIGNMENT 860 Y12-18c05.p1k chr08 21 1139 377716 378874 F 1119 93.66 1400 accept 0 ALIGNMENT 975 Y12-18c05.q1k chr08 1152 31 380946 382081 C 1122 97.15 1340 accept 0 ALIGNMENT 0 Y12-18c05.q1k chr14 120 848 332156 332155 F 729 0.00 1340 reject_low 1 ALIGNMENT 932 Y12-18c06.q1k chr15 32 1213 138324 139496 F 1182 94.50 1461 accept 0 ALIGNMENT 956 Y12-18c06.p1k chr15 1191 23 142493 143650 C 1169 95.55 1444 accept 0 ALIGNMENT 903 Y12-18c07.p1k chr02 1153 21 397896 399015 C 1133 94.79 1476 accept_chi 0 ALIGNMENT 841 Y12-18c07.q1k chr16 44 1175 424388 425520 F 1132 92.93 1318 accept_chi 1 ALIGNMENT 547 Y12-18c08.q1k chr12 1047 151 277261 278142 C 897 89.41 1522 accept 0 ALIGNMENT 633 Y12-18c08.p1k chr12 25 804 274109 274887 F 780 94.49 1337 accept 0 ALIGNMENT 0 Y12-18c09.q1k chr15 62 611 600403 600402 F 550 0.00 1332 reject_low 16 ALIGNMENT 246 Y12-18c09.p1k chr01 726 1063 182614 182954 F 338 92.31 1397 reject_low 2 ALIGNMENT 96 Y12-18c09.q1k chr01 558 426 182823 182955 C 133 91.73 1332 reject_low 2 ALIGNMENT 0 Y12-18c09.q1k chr03 62 610 169201 169200 F 549 0.00 1332 reject_low 19 ALIGNMENT 253 Y12-18c09.p1k chr04 1062 725 945949 946290 C 338 92.90 1397 reject_low 31 ALIGNMENT 247 Y12-18c09.p1k chr11 1062 725 202290 202630 C 338 92.31 1397 reject_low 45 ALIGNMENT 0 Y12-18c09.p1k chr07 629 62 736425 736424 C 568 0.00 1397 reject_low 3 ALIGNMENT 0 Y12-18c09.q1k chr03 429 62 169062 169061 C 368 0.00 1332 reject_low 18 ALIGNMENT 295 Y12-18c09.q1k chr13 944 612 362586 362917 C 333 97.90 1332 reject_low 7 ALIGNMENT 0 Y12-18c09.p1k chr04 62 725 1023131 1023130 F 664 0.00 1397 reject_low 38 ALIGNMENT 295 Y12-18c09.q1k chr14 944 612 96610 96941 C 333 97.90 1332 reject_low 8 ALIGNMENT 103 Y12-18c09.q1k chr01 612 939 189420 189747 F 328 79.88 1332 reject_low 42 ALIGNMENT 208 Y12-18c09.p1k chr05 1062 805 492434 492690 C 258 94.57 1397 reject_low 41 ALIGNMENT 0 Y12-18c09.q1k chr07 433 537 401624 401887 F 105 0.00 1332 accept 0 ALIGNMENT 82 Y12-18c09.q1k chr15 730 859 594630 594759 F 130 90.00 1332 reject_low 43 ALIGNMENT 0 Y12-18c09.p1k chr11 647 62 202708 202707 C 586 0.00 1397 reject_low 45 ALIGNMENT 0 Y12-18c09.p1k chr03 62 727 168386 168385 F 666 0.00 1397 reject_low 18 ALIGNMENT 0 Y12-18c09.p1k chr09 62 720 210299 210298 F 659 0.00 1397 reject_low 25 ALIGNMENT 0 Y12-18c09.q1k chr01 62 611 189420 189419 F 550 0.00 1332 reject_low 42 ALIGNMENT 262 Y12-18c09.q1k chr03 611 923 169201 169519 F 313 96.81 1332 reject_low 19 ALIGNMENT 0 Y12-18c09.q1k chr07 611 62 817730 817729 C 550 0.00 1332 reject_low 14 ALIGNMENT 243 Y12-18c09.p1k chr16 736 1062 856551 856881 F 327 92.66 1397 reject_low 39 ALIGNMENT 283 Y12-18c09.q1k chr02 610 923 259574 259887 F 314 98.73 1332 reject_low 12 ALIGNMENT 371 Y12-18c09.q1k chr07 35 432 401226 401623 F 398 99.25 1332 accept 0 ALIGNMENT 0 Y12-18c09.q1k chr12 611 62 215419 215418 C 550 0.00 1332 reject_low 21 ALIGNMENT 0 Y12-18c09.q1k chr08 611 62 116748 116747 C 550 0.00 1332 reject_low 10 ALIGNMENT 45 Y12-18c09.q1k chr07 558 493 401829 401894 C 66 90.91 1332 reject_low 9 ALIGNMENT 0 Y12-18c09.p1k chr14 62 725 726235 726234 F 664 0.00 1397 reject_low 37 ALIGNMENT 0 Y12-18c09.p1k chr07 62 725 735987 735986 F 664 0.00 1397 reject_low 33 ALIGNMENT 0 Y12-18c09.q1k chr07 62 808 817278 817277 F 747 0.00 1332 reject_low 44 ALIGNMENT 0 Y12-18c09.q1k chr13 62 600 184158 184157 F 539 0.00 1332 reject_low 5 ALIGNMENT 0 Y12-18c09.q1k chr04 62 610 1095761 1095760 F 549 0.00 1332 reject_low 20 ALIGNMENT 0 Y12-18c09.p1k chr04 62 722 668088 668087 F 661 0.00 1397 reject_low 30 ALIGNMENT 262 Y12-18c09.q1k chr04 611 923 1095761 1096079 F 313 96.81 1332 reject_low 20 ALIGNMENT 0 Y12-18c09.q1k chr13 611 62 357336 357335 C 550 0.00 1332 reject_low 6 ALIGNMENT 247 Y12-18c09.p1k chr07 721 1062 712204 712549 F 342 92.11 1397 reject_low 29 ALIGNMENT 287 Y12-18c09.q1k chr07 923 600 823000 823323 C 324 98.15 1332 reject_low 4 ALIGNMENT 240 Y12-18c09.p1k chr12 726 1057 374000 374334 F 332 92.17 1397 reject_low 40 ALIGNMENT 259 Y12-18c09.p1k chr02 715 1062 197706 198057 F 348 92.53 1397 reject_low 24 ALIGNMENT 0 Y12-18c09.q1k chr01 902 559 182824 182823 C 344 0.00 1332 reject_low 2 ALIGNMENT 198 Y12-18c09.q1k chr01 944 612 165827 166163 C 333 88.59 1332 reject_low 26 ALIGNMENT 0 Y12-18c09.p1k chr16 62 735 856551 856550 F 674 0.00 1397 reject_low 39 ALIGNMENT 0 Y12-18c09.q1k chr01 611 62 166164 166163 C 550 0.00 1332 reject_low 26 ALIGNMENT 0 Y12-18c09.p1k chr11 724 703 202631 202651 C 22 0.00 1397 reject_low 45 ALIGNMENT 248 Y12-18c09.p1k chr07 723 1062 707196 707538 F 340 92.35 1397 reject_low 32 ALIGNMENT 0 Y12-18c09.p1k chr02 62 714 197706 197705 F 653 0.00 1397 reject_low 24 ALIGNMENT 292 Y12-18c09.q1k chr08 944 612 116416 116747 C 333 97.60 1332 reject_low 10 ALIGNMENT 238 Y12-18c09.p1k chr04 726 1064 1023131 1023473 F 339 91.45 1397 reject_low 38 ALIGNMENT 0 Y12-18c09.q1k chr14 611 62 96942 96941 C 550 0.00 1332 reject_low 8 ALIGNMENT 246 Y12-18c09.p1k chr09 726 1062 205217 205556 F 337 92.28 1397 reject_low 34 ALIGNMENT 254 Y12-18c09.p1k chr05 1065 726 249926 250269 C 340 92.94 1397 reject_low 27 ALIGNMENT 0 Y12-18c09.q1k chr13 611 62 373034 373033 C 550 0.00 1332 reject_low 22 ALIGNMENT 245 Y12-18c09.p1k chr08 1062 726 146324 146664 C 337 92.28 1397 reject_low 35 ALIGNMENT 262 Y12-18c09.q1k chr13 923 612 372716 373033 C 312 96.79 1332 reject_low 22 ALIGNMENT 21 Y12-18c09.p1k chr11 702 648 202652 202707 C 55 80.00 1397 reject_low 45 ALIGNMENT 0 Y12-18c09.p1k chr09 62 725 205217 205216 F 664 0.00 1397 reject_low 34 ALIGNMENT 0 Y12-18c09.p1k chr08 725 62 146665 146664 C 664 0.00 1397 reject_low 35 ALIGNMENT 0 Y12-18c09.q1k chr02 62 609 259574 259573 F 548 0.00 1332 reject_low 12 ALIGNMENT 0 Y12-18c09.q1k chr15 62 729 594630 594629 F 668 0.00 1332 reject_low 43 ALIGNMENT 243 Y12-18c09.p1k chr14 726 1062 726235 726575 F 337 91.99 1397 reject_low 37 ALIGNMENT 0 Y12-18c09.p1k chr05 804 62 492691 492690 C 743 0.00 1397 reject_low 41 ALIGNMENT 260 Y12-18c09.p1k chr05 1062 726 434627 434967 C 337 93.77 1397 reject_low 28 ALIGNMENT 0 Y12-18c09.p1k chr05 725 62 434968 434967 C 664 0.00 1397 reject_low 28 ALIGNMENT 869 Y12-18c09.p1k chr07 951 24 405231 406158 C 928 98.49 1397 accept 0 ALIGNMENT 0 Y12-18c09.p1k chr14 62 725 546739 546738 F 664 0.00 1397 reject_low 36 ALIGNMENT 243 Y12-18c09.p1k chr14 726 1062 546739 547078 F 337 91.99 1397 reject_low 36 ALIGNMENT 360 Y12-18c09.q1k chr01 612 1141 183136 183667 F 530 91.32 1332 reject_low 1 ALIGNMENT 284 Y12-18c09.q1k chr13 601 923 184158 184481 F 323 98.14 1332 reject_low 5 ALIGNMENT 0 Y12-18c09.p1k chr07 62 720 712204 712203 F 659 0.00 1397 reject_low 29 ALIGNMENT 0 Y12-18c09.q1k chr03 902 490 169003 169002 C 413 0.00 1332 reject_low 18 ALIGNMENT 0 Y12-18c09.p1k chr12 62 725 374000 373999 F 664 0.00 1397 reject_low 40 ALIGNMENT 497 Y12-18c09.q1k chr07 538 1141 401888 402495 F 604 95.86 1332 accept 0 ALIGNMENT 0 Y12-18c09.q1k chr08 611 62 543942 543941 C 550 0.00 1332 reject_low 15 ALIGNMENT 0 Y12-18c09.p1k chr05 725 62 250270 250269 C 664 0.00 1397 reject_low 27 ALIGNMENT 0 Y12-18c09.q1k chr01 62 611 183136 183135 F 550 0.00 1332 reject_low 1 ALIGNMENT 262 Y12-18c09.q1k chr15 612 923 117702 118019 F 312 96.79 1332 reject_low 23 ALIGNMENT 0 Y12-18c09.q1k chr13 611 62 362918 362917 C 550 0.00 1332 reject_low 7 ALIGNMENT 289 Y12-18c09.q1k chr07 612 944 931691 932022 F 333 97.30 1332 reject_low 11 ALIGNMENT 0 Y12-18c09.q1k chr15 62 610 594820 594819 F 549 0.00 1332 reject_low 13 ALIGNMENT 248 Y12-18c09.p1k chr09 721 1066 210299 210648 F 346 91.91 1397 reject_low 25 ALIGNMENT 0 Y12-18c09.q1k chr07 902 559 401830 401829 C 344 0.00 1332 reject_low 9 ALIGNMENT 285 Y12-18c09.q1k chr15 612 923 600403 600714 F 312 99.04 1332 reject_low 16 ALIGNMENT 113 Y12-18c09.p1k chr03 927 1065 168929 169066 F 139 95.68 1397|3,0 reject_low 18 ALIGNMENT 285 Y12-18c09.q1k chr07 923 612 817418 817729 C 312 99.04 1332 reject_low 14 ALIGNMENT 262 Y12-18c09.q1k chr12 923 612 215101 215418 C 312 96.79 1332 reject_low 21 ALIGNMENT 47 Y12-18c09.q1k chr03 489 430 169002 169061 C 60 93.33 1332 reject_low 18 ALIGNMENT 282 Y12-18c09.q1k chr08 923 611 549326 549638 C 313 98.72 1332 reject_low 17 ALIGNMENT 146 Y12-18c09.p1k chr03 728 932 168386 168595 F 205 91.71 1397|0,3 reject_low 18 ALIGNMENT 0 Y12-18c09.p1k chr01 62 725 182614 182613 F 664 0.00 1397 reject_low 2 ALIGNMENT 58 Y12-18c09.q1k chr07 809 920 817278 817387 F 112 86.61 1332 reject_low 44 ALIGNMENT 0 Y12-18c09.p1k chr03 930 929 168593 168931 F 0 0.00 1397 reject_low 18 ALIGNMENT 295 Y12-18c09.q1k chr13 944 612 357004 357335 C 333 97.90 1332 reject_low 6 ALIGNMENT 285 Y12-18c09.q1k chr15 611 923 594820 595132 F 313 99.04 1332 reject_low 13 ALIGNMENT 0 Y12-18c09.q1k chr01 425 62 182956 182955 C 364 0.00 1332 reject_low 2 ALIGNMENT 0 Y12-18c09.p1k chr07 820 712 736344 736343 C 109 0.00 1397 reject_low 3 ALIGNMENT 0 Y12-18c09.q1k chr07 62 611 931691 931690 F 550 0.00 1332 reject_low 11 ALIGNMENT 0 Y12-18c09.p1k chr04 724 62 946291 946290 C 663 0.00 1397 reject_low 31 ALIGNMENT 0 Y12-18c09.q1k chr15 860 902 594759 594758 F 43 0.00 1332 reject_low 43 ALIGNMENT 285 Y12-18c09.q1k chr08 923 612 543630 543941 C 312 99.04 1332 reject_low 15 ALIGNMENT 0 Y12-18c09.q1k chr07 599 62 823324 823323 C 538 0.00 1332 reject_low 4 ALIGNMENT 0 Y12-18c09.q1k chr07 492 62 401895 401894 C 431 0.00 1332 reject_low 9 ALIGNMENT 251 Y12-18c09.p1k chr04 723 1062 668088 668431 F 340 92.65 1397 reject_low 30 ALIGNMENT 76 Y12-18c09.p1k chr07 711 630 736343 736424 C 82 97.56 1397 reject_low 3 ALIGNMENT 0 Y12-18c09.q1k chr08 610 62 549639 549638 C 549 0.00 1332 reject_low 17 ALIGNMENT 0 Y12-18c09.p1k chr07 62 722 707196 707195 F 661 0.00 1397 reject_low 32 ALIGNMENT 252 Y12-18c09.p1k chr07 726 1056 735987 736321 F 331 93.35 1397 reject_low 33 ALIGNMENT 0 Y12-18c09.q1k chr15 62 611 117702 117701 F 550 0.00 1332 reject_low 23 ALIGNMENT 759 Y12-18c10.p1k chr09 28 1025 273566 274571 F 998 92.99 1417 accept 0 ALIGNMENT 1001 Y12-18c10.q1k chr09 1268 26 277199 278443 C 1243 94.69 1413 accept 0 ALIGNMENT 1034 Y12-18c11.q1k chr04 34 1252 1434674 1435895 F 1219 95.98 1337 accept 0 ALIGNMENT 1014 Y12-18c11.p1k chr04 1231 22 1438847 1440069 C 1210 96.78 1434 accept 0 ALIGNMENT 20 Y12-18c11.q1k chr09 67 37 350015 350045 C 31 90.32 1337 reject_low 1 ALIGNMENT 0 Y12-18c11.q1k chr09 875 68 350016 350015 C 808 0.00 1337 reject_low 1 ALIGNMENT 1073 Y12-18c12.q1k chr12 1257 35 893788 895014 C 1223 97.06 1403 accept 0 ALIGNMENT 978 Y12-18c12.p1k chr12 20 1118 890944 892059 F 1099 97.36 1376 accept 0 ALIGNMENT 933 Y12-18c15.q1k chr12 1101 33 466528 467614 C 1069 96.35 1317 accept 1 ALIGNMENT 1038 Y12-18c15.p1k chr12 19 1152 462852 464002 F 1134 97.71 1372 accept 1 ALIGNMENT 1038 Y12-18c15.p1k chr12 19 1152 453715 454865 F 1134 97.71 1372 accept 0 ALIGNMENT 933 Y12-18c15.q1k chr12 1101 33 457391 458477 C 1069 96.35 1317 accept 0 ALIGNMENT 976 Y12-18c16.p1k chr11 20 1202 637225 638422 F 1183 95.18 1387 accept 0 ALIGNMENT 951 Y12-18c16.q1k chr11 1172 39 640051 641199 C 1134 96.38 1366 accept 0 ALIGNMENT 935 Y12-18c18.q1k chr03 1112 37 71085 72171 C 1076 96.00 1300 accept 0 ALIGNMENT 1076 Y12-18c18.p1k chr03 20 1257 69476 70714 F 1238 96.20 1382 accept 0 ALIGNMENT 81 Y12-18c19.q1k chr05 433 515 434526 434608 F 83 100.00 1289 reject_low 3 ALIGNMENT 0 Y12-18c19.p1k chr08 828 337 237849 237848 C 492 0.00 1377 reject_low 13 ALIGNMENT 0 Y12-18c19.p1k chr08 240 62 358576 358575 C 179 0.00 1377 reject_low 12 ALIGNMENT 0 Y12-18c19.q1k chr13 658 659 357001 362919 C 0 0.00 1289 accept_trans 0 ALIGNMENT 91 Y12-18c19.p1k chr16 344 240 622527 622632 C 105 96.19 1377 reject_low 10 ALIGNMENT 0 Y12-18c19.p1k chr08 240 62 237945 237944 C 179 0.00 1377 reject_low 13 ALIGNMENT 0 Y12-18c19.q1k chr05 516 959 434608 434607 F 444 0.00 1289 reject_low 3 ALIGNMENT 0 Y12-18c19.p1k chr02 62 240 36392 36391 F 179 0.00 1377 reject_low 11 ALIGNMENT 0 Y12-18c19.q1k chr07 517 959 110701 110700 F 443 0.00 1289 reject_low 7 ALIGNMENT 0 Y12-18c19.q1k chr07 439 62 319860 319859 C 378 0.00 1289 reject_low 6 ALIGNMENT 0 Y12-18c19.p1k chr08 828 345 358473 358472 C 484 0.00 1377 reject_low 12 ALIGNMENT 94 Y12-18c19.p1k chr06 344 237 157900 158008 C 108 96.30 1377 reject_low 8 ALIGNMENT 0 Y12-18c19.p1k chr16 828 345 622528 622527 C 484 0.00 1377 reject_low 10 ALIGNMENT 76 Y12-18c19.q1k chr08 516 433 62752 62835 C 84 97.62 1289 reject_low 5 ALIGNMENT 76 Y12-18c19.q1k chr05 521 433 207350 207439 C 89 96.63 1289 reject_low 2 ALIGNMENT 0 Y12-18c19.p1k chr16 239 62 622633 622632 C 178 0.00 1377 reject_low 10 ALIGNMENT 0 Y12-18c19.q1k chr07 959 516 319785 319784 C 444 0.00 1289 reject_low 6 ALIGNMENT 90 Y12-18c19.p1k chr02 241 343 36392 36494 F 103 96.12 1377 reject_low 11 ALIGNMENT 0 Y12-18c19.p1k chr07 236 62 440820 440819 C 175 0.00 1377 reject_low 9 ALIGNMENT 88 Y12-18c19.p1k chr08 344 241 358472 358575 C 104 96.15 1377 reject_low 12 ALIGNMENT 0 Y12-18c19.p1k chr16 828 354 560176 560175 C 475 0.00 1377 reject_low 4 ALIGNMENT 75 Y12-18c19.q1k chr07 515 440 319784 319859 C 76 100.00 1289 reject_low 6 ALIGNMENT 0 Y12-18c19.p1k chr06 236 62 158009 158008 C 175 0.00 1377 reject_low 8 ALIGNMENT 0 Y12-18c19.q1k chr11 62 431 313034 313033 F 370 0.00 1289 reject_low 1 ALIGNMENT 0 Y12-18c19.p1k chr06 828 345 157901 157900 C 484 0.00 1377 reject_low 8 ALIGNMENT 89 Y12-18c19.p1k chr07 335 237 440720 440819 C 99 96.97 1377 reject_low 9 ALIGNMENT 575 Y12-18c19.q1k chr13 661 36 362917 363543 C 626 98.56 1289|3,0 accept_trans 0 ALIGNMENT 73 Y12-18c19.q1k chr07 436 516 110621 110701 F 81 97.53 1289 reject_low 7 ALIGNMENT 0 Y12-18c19.q1k chr08 959 517 62753 62752 C 443 0.00 1289 reject_low 5 ALIGNMENT 0 Y12-18c19.p1k chr04 242 62 1095458 1095457 C 181 0.00 1377 reject_low 15 ALIGNMENT 0 Y12-18c19.p1k chr07 828 336 440721 440720 C 493 0.00 1377 reject_low 9 ALIGNMENT 0 Y12-18c19.q1k chr05 62 432 434526 434525 F 371 0.00 1289 reject_low 3 ALIGNMENT 0 Y12-18c19.q1k chr11 520 959 313121 313120 F 440 0.00 1289 reject_low 1 ALIGNMENT 0 Y12-18c19.p1k chr02 344 828 36494 36493 F 485 0.00 1377 reject_low 11 ALIGNMENT 449 Y12-18c19.q1k chr13 1229 655 356430 357004 C 575 93.04 1289|0,4 accept_trans 0 ALIGNMENT 1084 Y12-18c19.p1k chr13 21 1361 352058 353410 F 1341 94.41 1377 accept_trans 0 ALIGNMENT 75 Y12-18c19.p1k chr04 346 243 1095353 1095457 C 104 91.35 1377 reject_low 15 ALIGNMENT 0 Y12-18c19.p1k chr04 828 347 1095354 1095353 C 482 0.00 1377 reject_low 15 ALIGNMENT 0 Y12-18c19.p1k chr14 62 239 374867 374866 F 178 0.00 1377 reject_low 14 ALIGNMENT 0 Y12-18c19.p1k chr16 242 62 560288 560287 C 181 0.00 1377 reject_low 4 ALIGNMENT 0 Y12-18c19.p1k chr14 335 828 374961 374960 F 494 0.00 1377 reject_low 14 ALIGNMENT 0 Y12-18c19.q1k chr07 62 435 110621 110620 F 374 0.00 1289 reject_low 7 ALIGNMENT 0 Y12-18c19.q1k chr05 959 522 207351 207350 C 438 0.00 1289 reject_low 2 ALIGNMENT 0 Y12-18c19.q1k chr08 432 62 62836 62835 C 371 0.00 1289 reject_low 5 ALIGNMENT 87 Y12-18c19.p1k chr16 353 243 560175 560287 C 111 93.69 1377 reject_low 4 ALIGNMENT 89 Y12-18c19.p1k chr08 336 241 237848 237944 C 96 97.92 1377 reject_low 13 ALIGNMENT 82 Y12-18c19.q1k chr11 432 519 313034 313121 F 88 98.86 1289 reject_low 1 ALIGNMENT 83 Y12-18c19.p1k chr14 240 334 374867 374961 F 95 95.79 1377 reject_low 14 ALIGNMENT 0 Y12-18c19.q1k chr05 432 62 207440 207439 C 371 0.00 1289 reject_low 2 ALIGNMENT 1043 Y12-18c20.p1k chr12 30 1222 528598 529802 F 1193 96.56 1337 accept 0 ALIGNMENT 1027 Y12-18c20.q1k chr12 1180 36 533337 534486 C 1145 96.86 1360 accept 0 ALIGNMENT 1001 Y12-18c21.q1k chr06 38 1243 50653 51855 F 1206 95.36 1251 accept 0 ALIGNMENT 1038 Y12-18c21.p1k chr06 1292 18 55153 56446 C 1275 94.67 1321 accept 0 ALIGNMENT 998 Y12-18c22.p1k chr12 1199 20 751039 752235 C 1180 96.78 1309 accept 0 ALIGNMENT 946 Y12-18c22.q1k chr12 37 1159 746744 747879 F 1123 96.53 1280 accept 0 ALIGNMENT 974 Y12-18c23.p1k chr14 19 1190 705719 706902 F 1172 95.65 1287 accept 0 ALIGNMENT 0 Y12-18c23.q1k chr03 848 471 275455 275454 C 378 0.00 1214 reject_low 1 ALIGNMENT 0 Y12-18c23.q1k chr03 121 62 275803 275802 C 60 0.00 1214 reject_low 1 ALIGNMENT 121 Y12-18c23.q1k chr03 470 122 275454 275802 C 349 79.08 1214 reject_low 1 ALIGNMENT 977 Y12-18c23.q1k chr14 1179 32 709388 710533 C 1148 96.17 1214 accept 0 ALIGNMENT 581 Y12-18c24.q1k chr08 26 833 214818 215620 F 808 92.33 1328 reject_low 1 ALIGNMENT 608 Y12-18c24.q1k chr08 26 1040 212820 213819 F 1015 88.87 1328 accept 0 ALIGNMENT 889 Y12-18d01.q1k chr16 1076 41 411514 412571 C 1036 96.24 1308 accept 0 ALIGNMENT 1044 Y12-18d01.p1k chr16 22 1234 407500 408720 F 1213 96.37 1426 accept 0 ALIGNMENT 1005 Y12-18d02.q1k chr10 29 1215 139197 140392 F 1187 96.29 1357 accept 0 ALIGNMENT 1012 Y12-18d02.p1k chr10 1219 30 142830 144028 C 1190 95.80 1387 accept 0 ALIGNMENT 75 Y12-18d03.q1k chr11 752 838 219536 219623 F 87 96.55 1402 reject_low 2 ALIGNMENT 0 Y12-18d03.q1k chr04 62 756 410376 410375 F 695 0.00 1402 reject_low 10 ALIGNMENT 0 Y12-18d03.q1k chr11 62 751 219536 219535 F 690 0.00 1402 reject_low 2 ALIGNMENT 0 Y12-18d03.q1k chr06 754 62 204987 204986 C 693 0.00 1402 reject_low 5 ALIGNMENT 905 Y12-18d03.q1k chr13 1187 32 320802 321949 C 1156 94.46 1402 accept 0 ALIGNMENT 76 Y12-18d03.q1k chr07 753 843 774350 774442 F 91 95.60 1402 reject_low 1 ALIGNMENT 0 Y12-18d03.q1k chr08 756 62 146308 146307 C 695 0.00 1402 reject_low 6 ALIGNMENT 76 Y12-18d03.q1k chr16 755 833 856896 856974 F 79 100.00 1402 reject_low 4 ALIGNMENT 0 Y12-18d03.q1k chr16 62 754 856896 856895 F 693 0.00 1402 reject_low 4 ALIGNMENT 0 Y12-18d03.q1k chr07 62 752 774350 774349 F 691 0.00 1402 reject_low 1 ALIGNMENT 0 Y12-18d03.q1k chr12 751 62 657014 657013 C 690 0.00 1402 reject_low 3 ALIGNMENT 70 Y12-18d03.q1k chr04 757 829 410376 410448 F 73 100.00 1402 reject_low 10 ALIGNMENT 0 Y12-18d03.q1k chr11 62 756 517630 517629 F 695 0.00 1402 reject_low 8 ALIGNMENT 978 Y12-18d03.p1k chr13 29 1210 317980 319160 F 1182 95.26 1419 accept 0 ALIGNMENT 71 Y12-18d03.q1k chr10 833 757 197228 197304 C 77 98.70 1402 reject_low 9 ALIGNMENT 74 Y12-18d03.q1k chr11 757 833 517630 517706 F 77 100.00 1402 reject_low 8 ALIGNMENT 0 Y12-18d03.q1k chr13 756 62 768441 768440 C 695 0.00 1402 reject_low 7 ALIGNMENT 71 Y12-18d03.q1k chr08 836 757 146228 146307 C 80 97.50 1402 reject_low 6 ALIGNMENT 71 Y12-18d03.q1k chr13 836 757 768361 768440 C 80 97.50 1402 reject_low 7 ALIGNMENT 75 Y12-18d03.q1k chr06 832 755 204909 204986 C 78 100.00 1402 reject_low 5 ALIGNMENT 73 Y12-18d03.q1k chr12 829 752 656936 657013 C 78 98.72 1402 reject_low 3 ALIGNMENT 0 Y12-18d03.q1k chr10 756 62 197305 197304 C 695 0.00 1402 reject_low 9 ALIGNMENT 850 Y12-18d04.p1k chr04 1094 34 389399 390437 C 1061 95.85 1484 accept 0 ALIGNMENT 943 Y12-18d04.q1k chr04 29 1137 385092 386210 F 1109 96.30 1328 accept 0 ALIGNMENT 0 Y12-18d04.p1k chr13 830 59 587630 587629 C 772 0.00 1484 reject_low 3 ALIGNMENT 21 Y12-18d04.p1k chr13 58 19 587629 587668 C 40 97.50 1484 reject_low 3 ALIGNMENT 0 Y12-18d04.p1k chr16 59 830 897130 897129 F 772 0.00 1484 reject_low 2 ALIGNMENT 21 Y12-18d04.p1k chr16 18 58 897090 897130 F 41 95.12 1484 reject_low 2 ALIGNMENT 0 Y12-18d04.p1k chr13 830 86 587642 587641 C 745 0.00 1484 reject_low 1 ALIGNMENT 22 Y12-18d04.p1k chr13 85 18 587641 587708 C 68 86.76 1484 reject_low 1 ALIGNMENT 961 Y12-18d05.p1k chr03 23 1114 41940 43038 F 1092 97.44 1395 accept 0 ALIGNMENT 896 Y12-18d05.q1k chr03 1040 36 45297 46316 C 1005 97.61 1365 accept 0 ALIGNMENT 846 Y12-18d06.p1k chr04 22 1047 42288 43312 F 1026 95.22 1424 accept 0 ALIGNMENT 934 Y12-18d06.q1k chr04 1136 29 46714 47832 C 1108 95.76 1434 accept 0 ALIGNMENT 1026 Y12-18d07.p1k chr04 22 1146 794221 795350 F 1125 97.69 1373 accept 0 ALIGNMENT 1029 Y12-18d07.q1k chr04 1260 34 799381 800599 C 1227 96.09 1393 accept 0 ALIGNMENT 702 Y12-18d08.q1k chr11 855 9 166883 167731 C 847 95.87 1171 accept 0 ALIGNMENT 215 Y12-18d09.q1k chr02 661 45 681579 682187 C 617 80.39 1376 accept 0 ALIGNMENT 981 Y12-18d10.q1k chr14 1171 36 42816 43961 C 1136 96.30 1377 accept 0 ALIGNMENT 578 Y12-18d11.q1k chr07 29 705 6256 6932 F 677 95.57 1359 reject_low 3 ALIGNMENT 0 Y12-18d11.q1k chr08 709 849 12575 12574 F 141 0.00 1359 reject_low 9 ALIGNMENT 0 Y12-18d11.q1k chr03 254 62 290194 290193 C 193 0.00 1359 reject_low 20 ALIGNMENT 532 Y12-18d11.q1k chr12 29 705 13049 13726 F 677 93.35 1359 reject_low 7 ALIGNMENT 0 Y12-18d11.q1k chr12 706 849 13726 13725 F 144 0.00 1359 reject_low 7 ALIGNMENT 349 Y12-18d11.q1k chr13 708 29 922358 923045 C 680 84.85 1359 reject_low 15 ALIGNMENT 377 Y12-18d11.q1k chr04 459 29 1523198 1523631 C 431 96.29 1359 reject_low 16 ALIGNMENT 0 Y12-18d11.q1k chr15 709 849 12193 12192 F 141 0.00 1359 reject_low 11 ALIGNMENT 0 Y12-18d11.q1k chr14 849 706 781638 781637 C 144 0.00 1359 reject_low 8 ALIGNMENT 0 Y12-18d11.q1k chr04 849 460 1523199 1523198 C 390 0.00 1359 reject_low 16 ALIGNMENT 0 Y12-18d11.q1k chr02 849 471 809007 809006 C 379 0.00 1359 reject_low 18 ALIGNMENT 353 Y12-18d11.q1k chr12 1192 709 1061366 1061866 C 484 92.77 1359 reject_low 1 ALIGNMENT 498 Y12-18d11.q1k chr01 52 707 1796 2448 F 656 92.53 1359 reject_low 10 ALIGNMENT 295 Y12-18d11.p1k chr14 336 998 754688 755342 F 663 83.26 1441 reject_low 2 ALIGNMENT 61 Y12-18d11.q1k chr03 452 255 289999 290193 C 198 79.29 1359 reject_low 20 ALIGNMENT 0 Y12-18d11.q1k chr05 849 463 63696 63695 C 387 0.00 1359 reject_low 19 ALIGNMENT 0 Y12-18d11.q1k chr03 849 453 290000 289999 C 397 0.00 1359 reject_low 20 ALIGNMENT 0 Y12-18d11.p1k chr14 62 335 754688 754687 F 274 0.00 1441 reject_low 2 ALIGNMENT 546 Y12-18d11.q1k chr02 29 705 7571 8249 F 677 94.09 1359 reject_low 6 ALIGNMENT 352 Y12-18d11.q1k chr16 29 708 7901 8590 F 680 84.85 1359 reject_low 14 ALIGNMENT 0 Y12-18d11.q1k chr07 706 849 6932 6931 F 144 0.00 1359 reject_low 3 ALIGNMENT 574 Y12-18d11.q1k chr09 29 705 8756 9435 F 677 95.27 1359 reject_low 4 ALIGNMENT 0 Y12-18d11.q1k chr03 708 706 306473 307515 C 3 0.00 1359 accept 0 ALIGNMENT 516 Y12-18d11.q1k chr08 32 708 11890 12575 F 677 92.61 1359 reject_low 9 ALIGNMENT 574 Y12-18d11.q1k chr10 29 705 8739 9418 F 677 95.27 1359 reject_low 5 ALIGNMENT 526 Y12-18d11.q1k chr14 705 29 781637 782314 C 677 93.21 1359 reject_low 8 ALIGNMENT 389 Y12-18d11.q1k chr03 705 29 307516 308203 C 677 86.85 1359 accept 0 ALIGNMENT 0 Y12-18d11.q1k chr13 849 709 922359 922358 C 141 0.00 1359 reject_low 15 ALIGNMENT 0 Y12-18d11.q1k chr02 706 849 8249 8248 F 144 0.00 1359 reject_low 6 ALIGNMENT 417 Y12-18d11.q1k chr09 705 29 433645 434331 C 677 87.89 1359 reject_low 12 ALIGNMENT 0 Y12-18d11.q1k chr16 709 849 8590 8589 F 141 0.00 1359 reject_low 14 ALIGNMENT 0 Y12-18d11.q1k chr01 708 849 2448 2447 F 142 0.00 1359 reject_low 10 ALIGNMENT 0 Y12-18d11.q1k chr09 849 706 433646 433645 C 144 0.00 1359 reject_low 12 ALIGNMENT 850 Y12-18d11.p1k chr03 24 1053 302365 303388 F 1030 95.73 1441 accept 0 ALIGNMENT 355 Y12-18d11.q1k chr02 470 32 809006 809444 C 439 94.08 1359 reject_low 18 ALIGNMENT 326 Y12-18d11.q1k chr05 462 52 63695 64101 C 411 93.92 1359 reject_low 19 ALIGNMENT 0 Y12-18d11.q1k chr10 706 849 9418 9417 F 144 0.00 1359 reject_low 5 ALIGNMENT 0 Y12-18d11.q1k chr07 849 471 1080268 1080267 C 379 0.00 1359 reject_low 17 ALIGNMENT 457 Y12-18d11.q1k chr15 29 708 11514 12193 F 680 89.56 1359 reject_low 11 ALIGNMENT 0 Y12-18d11.q1k chr09 706 849 9435 9434 F 144 0.00 1359 reject_low 4 ALIGNMENT 560 Y12-18d11.q1k chr12 705 29 1062636 1063312 C 677 94.53 1359 reject_low 1 ALIGNMENT 417 Y12-18d11.q1k chr11 29 705 1774 2462 F 677 87.59 1359 reject_low 13 ALIGNMENT 0 Y12-18d11.q1k chr11 706 849 2462 2461 F 144 0.00 1359 reject_low 13 ALIGNMENT 0 Y12-18d11.q1k chr12 708 706 1061867 1062635 C 3 0.00 1359 reject_low 1 ALIGNMENT 295 Y12-18d11.q1k chr03 1192 709 305969 306472 C 484 88.84 1359 accept 0 ALIGNMENT 373 Y12-18d11.q1k chr07 470 32 1080267 1080705 C 439 95.44 1359 reject_low 17 ALIGNMENT 1021 Y12-18d12.p1k chr08 1157 20 387202 388350 C 1138 97.28 1369 accept 0 ALIGNMENT 1040 Y12-18d12.q1k chr08 37 1239 382809 384025 F 1203 96.51 1383 accept 0 ALIGNMENT 600 Y12-18d13.p1k chr05 697 25 245385 246055 C 673 97.33 1449 accept 0 ALIGNMENT 930 Y12-18d13.q1k chr05 39 1154 240486 241617 F 1116 95.43 1384 accept 0 ALIGNMENT 960 Y12-18d14.q1k chr16 38 1129 64575 65675 F 1092 97.16 1371 accept 0 ALIGNMENT 1056 Y12-18d14.p1k chr16 1289 18 67881 69173 C 1272 95.60 1383 accept 0 ALIGNMENT 1022 Y12-18d15.p1k chr07 1269 22 516398 517656 C 1248 94.87 1388 accept 0 ALIGNMENT 994 Y12-18d15.q1k chr07 36 1111 513697 514783 F 1076 98.51 1377 accept 0 ALIGNMENT 119 Y12-18d16.q1k chr12 391 509 482044 482162 F 119 100.00 1419 reject_low 5 ALIGNMENT 1011 Y12-18d16.p1k chr12 1132 24 453414 454533 C 1109 97.57 1328 reject_low 1 ALIGNMENT 0 Y12-18d16.q1k chr12 510 867 482162 482161 F 358 0.00 1419 reject_low 5 ALIGNMENT 0 Y12-18d16.q1k chr06 867 132 31623 31622 C 736 0.00 1419 reject_low 7 ALIGNMENT 0 Y12-18d16.q1k chr12 62 390 482044 482043 F 329 0.00 1419 reject_low 5 ALIGNMENT 1011 Y12-18d16.p1k chr12 1132 24 462551 463670 C 1109 97.57 1328 accept 0 ALIGNMENT 0 Y12-18d16.q1k chr12 510 867 468930 468929 F 358 0.00 1419 reject_low 2 ALIGNMENT 128 Y12-18d16.q1k chr12 391 524 489348 489481 F 134 98.51 1419 reject_low 3 ALIGNMENT 0 Y12-18d16.q1k chr12 525 867 489481 489480 F 343 0.00 1419 reject_low 3 ALIGNMENT 0 Y12-18d16.q1k chr12 510 867 472582 472581 F 358 0.00 1419 reject_low 4 ALIGNMENT 841 Y12-18d16.q1k chr12 38 1271 459322 460588 F 1234 91.49 1419 accept 0 ALIGNMENT 81 Y12-18d16.q1k chr06 131 41 31622 31712 C 91 98.90 1419 reject_low 7 ALIGNMENT 0 Y12-18d16.q1k chr12 510 867 485814 485813 F 358 0.00 1419 reject_low 6 ALIGNMENT 458 Y12-18d16.q1k chr12 38 509 468459 468930 F 472 100.00 1419 reject_low 2 ALIGNMENT 0 Y12-18d16.q1k chr12 62 390 489348 489347 F 329 0.00 1419 reject_low 3 ALIGNMENT 119 Y12-18d16.q1k chr12 391 509 485696 485814 F 119 100.00 1419 reject_low 6 ALIGNMENT 0 Y12-18d16.q1k chr12 62 390 485696 485695 F 329 0.00 1419 reject_low 6 ALIGNMENT 119 Y12-18d16.q1k chr12 391 509 472464 472582 F 119 100.00 1419 reject_low 4 ALIGNMENT 0 Y12-18d16.q1k chr12 62 390 472464 472463 F 329 0.00 1419 reject_low 4 ALIGNMENT 20 Y12-18d17.q1k chr13 834 801 239354 239387 C 34 100.00 1327 reject_low 2 ALIGNMENT 0 Y12-18d17.q1k chr13 898 835 239355 239354 C 64 0.00 1327 reject_low 2 ALIGNMENT 947 Y12-18d17.q1k chr05 1201 41 225403 226567 C 1161 95.52 1327 accept 0 ALIGNMENT 22 Y12-18d17.q1k chr15 834 797 355083 355120 C 38 100.00 1327 reject_low 1 ALIGNMENT 0 Y12-18d17.q1k chr15 796 62 355121 355120 C 735 0.00 1327 reject_low 1 ALIGNMENT 956 Y12-18d17.p1k chr05 23 1157 221307 222463 F 1135 96.04 1335 accept 0 ALIGNMENT 0 Y12-18d17.q1k chr15 898 835 355084 355083 C 64 0.00 1327 reject_low 1 ALIGNMENT 0 Y12-18d17.q1k chr13 800 62 239388 239387 C 739 0.00 1327 reject_low 2 ALIGNMENT 270 Y12-18d18.p1k chr15 31 575 681532 682076 F 545 83.49 1391 reject_low 1 ALIGNMENT 0 Y12-18d18.p1k chr15 576 899 682076 682075 F 324 0.00 1391 reject_low 1 ALIGNMENT 908 Y12-18d18.q1k chr12 1081 40 724866 725924 C 1042 96.83 1337 accept 0 ALIGNMENT 1059 Y12-18d18.p1k chr12 21 1239 720850 722072 F 1219 96.55 1391 accept 0 ALIGNMENT 1004 Y12-18d19.q1k chr08 37 1159 277963 279097 F 1123 97.42 1319 accept 0 ALIGNMENT 1011 Y12-18d19.p1k chr08 1242 28 281267 282490 C 1215 95.80 1344 accept 0 ALIGNMENT 968 Y12-18d20.p1k chr16 1135 26 24913 26037 C 1110 96.76 1308 accept 0 ALIGNMENT 0 Y12-18d20.p1k chr13 312 882 917889 917888 F 571 0.00 1308 reject_low 1 ALIGNMENT 277 Y12-18d20.p1k chr13 26 311 917604 917889 F 286 99.30 1308 reject_low 1 ALIGNMENT 863 Y12-18d20.q1k chr16 41 1239 19941 21140 F 1199 92.66 1328 accept 0 ALIGNMENT 1010 Y12-18d21.p1k chr09 22 1302 38212 39498 F 1281 94.61 1332 accept 0 ALIGNMENT 1005 Y12-18d21.q1k chr09 1278 37 42215 43472 C 1242 95.01 1300 accept 0 ALIGNMENT 894 Y12-18d23.q1k chr12 31 1125 980468 981557 F 1095 94.89 1284 ambiguous_trans 11 ALIGNMENT 167 Y12-18d23.q1k chr16 611 1063 855897 856346 F 453 79.69 1284 ambiguous_trans 21 ALIGNMENT 0 Y12-18d23.q1k chr16 62 610 855897 855896 F 549 0.00 1284 ambiguous_trans 21 ALIGNMENT 25 Y12-18d23.q1k chr03 1038 987 84629 84680 C 52 82.69 1284 ambiguous_trans_ua 27 ALIGNMENT 90 Y12-18d23.q1k chr06 1125 937 143674 143858 C 189 84.13 1284 ambiguous_trans 23 ALIGNMENT 996 Y12-18d23.p1k chr10 1249 18 357695 358944 C 1232 94.56 1306 accept 0 ALIGNMENT 948 Y12-18d23.q1k chr03 1125 31 84949 86038 C 1095 96.53 1284 ambiguous_trans 1 ALIGNMENT 0 Y12-18d23.q1k chr03 925 62 84627 84626 C 864 0.00 1284 ambiguous_trans_ua 24 ALIGNMENT 179 Y12-18d23.q1k chr02 1063 611 259774 260223 C 453 80.57 1284 ambiguous_trans 17 ALIGNMENT 927 Y12-18d23.q1k chr07 31 1125 573476 574565 F 1095 95.71 1284 ambiguous_trans 5 ALIGNMENT 945 Y12-18d23.q1k chr06 1125 31 138047 139136 C 1095 96.26 1284 ambiguous_trans 2 ALIGNMENT 0 Y12-18d23.q1k chr10 610 62 473031 473030 C 549 0.00 1284 ambiguous_trans 15 ALIGNMENT 0 Y12-18d23.q1k chr15 62 938 704074 704073 F 877 0.00 1284 ambiguous_trans 25 ALIGNMENT 0 Y12-18d23.q1k chr03 936 62 90761 90760 C 875 0.00 1284 ambiguous_trans 22 ALIGNMENT 922 Y12-18d23.q1k chr14 31 1125 566764 567854 F 1095 95.53 1284 ambiguous_trans 6 ALIGNMENT 93 Y12-18d23.q1k chr03 1125 937 90576 90760 C 189 84.66 1284 ambiguous_trans 22 ALIGNMENT 918 Y12-18d23.q1k chr04 1125 31 981304 982393 C 1095 95.43 1284 ambiguous_trans 8 ALIGNMENT 85 Y12-18d23.q1k chr03 1125 926 84433 84626 C 200 83.50 1284 ambiguous_trans_ua 24 ALIGNMENT 918 Y12-18d23.q1k chr04 31 1125 518415 519504 F 1095 95.43 1284 ambiguous_trans 7 ALIGNMENT 182 Y12-18d23.q1k chr13 1063 611 196535 196984 C 453 80.57 1284 ambiguous_trans 16 ALIGNMENT 894 Y12-18d23.q1k chr04 1125 31 871955 873044 C 1095 94.70 1284 ambiguous_trans 10 ALIGNMENT 933 Y12-18d23.q1k chr12 1125 31 941328 942417 C 1095 95.89 1284 ambiguous_trans 4 ALIGNMENT 176 Y12-18d23.q1k chr16 1063 611 56655 57104 C 453 80.13 1284 ambiguous_trans 20 ALIGNMENT 28 Y12-18d23.q1k chr06 1052 1008 137851 137894 C 45 88.89 1284 ambiguous_trans_ua 26 ALIGNMENT 890 Y12-18d23.q1k chr15 31 1125 708795 709885 F 1095 94.52 1284 ambiguous_trans 12 ALIGNMENT 0 Y12-18d23.q1k chr06 936 62 143859 143858 C 875 0.00 1284 ambiguous_trans 23 ALIGNMENT 201 Y12-18d23.q1k chr04 611 1125 650765 651275 F 515 80.39 1284 ambiguous_trans 14 ALIGNMENT 879 Y12-18d23.q1k chr15 1125 31 970421 971510 C 1095 94.25 1284 ambiguous_trans 13 ALIGNMENT 0 Y12-18d23.q1k chr15 610 62 595469 595468 C 549 0.00 1284 ambiguous_trans 18 ALIGNMENT 0 Y12-18d23.q1k chr02 610 62 260224 260223 C 549 0.00 1284 ambiguous_trans 17 ALIGNMENT 0 Y12-18d23.q1k chr03 986 62 84681 84680 C 925 0.00 1284 ambiguous_trans_ua 27 ALIGNMENT 73 Y12-18d23.q1k chr15 939 1125 704074 704257 F 187 80.75 1284 ambiguous_trans 25 ALIGNMENT 0 Y12-18d23.q1k chr13 610 62 196985 196984 C 549 0.00 1284 ambiguous_trans 16 ALIGNMENT 179 Y12-18d23.q1k chr15 1063 611 595019 595468 C 453 80.57 1284 ambiguous_trans 18 ALIGNMENT 0 Y12-18d23.q1k chr16 610 62 57105 57104 C 549 0.00 1284 ambiguous_trans 20 ALIGNMENT 0 Y12-18d23.q1k chr12 62 610 220353 220352 F 549 0.00 1284 ambiguous_trans_ua 19 ALIGNMENT 894 Y12-18d23.q1k chr02 1125 31 29780 30869 C 1095 94.70 1284 ambiguous_trans 9 ALIGNMENT 0 Y12-18d23.q1k chr06 1007 62 137895 137894 C 946 0.00 1284 ambiguous_trans_ua 26 ALIGNMENT 176 Y12-18d23.q1k chr12 611 1063 220353 220802 F 453 80.13 1284 ambiguous_trans_ua 19 ALIGNMENT 0 Y12-18d23.q1k chr04 62 610 650765 650764 F 549 0.00 1284 ambiguous_trans 14 ALIGNMENT 182 Y12-18d23.q1k chr10 1063 611 472581 473030 C 453 80.57 1284 ambiguous_trans 15 ALIGNMENT 945 Y12-18d23.q1k chr07 1125 31 811591 812680 C 1095 96.26 1284 ambiguous_trans 3 ALIGNMENT 597 Y12-18d24.q1k chr15 45 789 287118 287857 F 745 94.09 1393 accept 0 ALIGNMENT 529 Y12-18d24.p1k chr15 799 21 290350 291125 C 779 90.37 1421 accept 0 ALIGNMENT 1009 Y12-18e01.q1k chr15 1216 36 886041 887238 C 1181 96.36 1304 accept 0 ALIGNMENT 1051 Y12-18e01.p1k chr15 18 1216 883212 884428 F 1199 96.66 1394 accept 0 ALIGNMENT 1035 Y12-18e02.p1k chr10 16 1183 427655 428830 F 1168 97.86 1380 accept 0 ALIGNMENT 1057 Y12-18e02.q1k chr10 1317 34 431490 432784 C 1284 95.48 1379 accept 0 ALIGNMENT 0 Y12-18e03.p1k chr08 362 62 365407 365406 C 301 0.00 1382 reject_low 2 ALIGNMENT 1029 Y12-18e03.p1k chr10 23 1190 138551 139737 F 1168 97.17 1382 accept 0 ALIGNMENT 22 Y12-18e03.p1k chr08 385 363 252921 252943 C 23 100.00 1382 reject_low 1 ALIGNMENT 969 Y12-18e03.q1k chr10 1163 37 143591 144729 C 1127 96.27 1293 accept 0 ALIGNMENT 0 Y12-18e03.p1k chr08 892 387 365384 365383 C 506 0.00 1382 reject_low 2 ALIGNMENT 0 Y12-18e03.p1k chr08 892 386 252922 252921 C 507 0.00 1382 reject_low 1 ALIGNMENT 20 Y12-18e03.p1k chr08 386 363 365383 365406 C 24 95.83 1382 reject_low 2 ALIGNMENT 0 Y12-18e03.p1k chr08 362 62 252944 252943 C 301 0.00 1382 reject_low 1 ALIGNMENT 0 Y12-18e03.p1k chr08 362 62 365449 365448 C 301 0.00 1382 reject_low 3 ALIGNMENT 0 Y12-18e03.p1k chr08 892 387 365426 365425 C 506 0.00 1382 reject_low 3 ALIGNMENT 20 Y12-18e03.p1k chr08 386 363 365425 365448 C 24 95.83 1382 reject_low 3 ALIGNMENT 816 Y12-18e04.p1k chr11 22 1087 439425 440505 F 1066 94.65 1361 accept 0 ALIGNMENT 1060 Y12-18e04.q1k chr11 1213 30 443812 444999 C 1184 97.80 1372 accept 0 ALIGNMENT 832 Y12-18e05.q1k chr10 2 1015 66207 67223 F 1014 95.56 1218 accept 0 ALIGNMENT 726 Y12-18e05.p1k chr10 1052 134 69223 70127 C 919 94.23 1459 accept 0 ALIGNMENT 0 Y12-18e06.p1k chr04 744 62 1360790 1360789 C 683 0.00 1339 reject_low 1 ALIGNMENT 206 Y12-18e06.p1k chr04 1086 745 1360434 1360789 C 342 88.30 1339 reject_low 1 ALIGNMENT 958 Y12-18e06.p1k chr13 18 1109 222258 223369 F 1092 97.16 1339 accept 0 ALIGNMENT 147 Y12-18e08.q1k vc_4 312 1 5279 5600 C 312 83.97 473 reject_vc 0 ALIGNMENT 147 Y12-18e08.q1k vc_5 1 312 2608 2929 F 312 83.97 473 reject_vc 1 ALIGNMENT 131 Y12-18e08.q1k vc_7 217 1 4955 5172 C 217 88.02 473 reject_low 6 ALIGNMENT 134 Y12-18e08.q1k vc_3 1 217 2741 2958 F 217 88.48 473 reject_low 5 ALIGNMENT 147 Y12-18e08.q1k vc_7 312 1 2196 2517 C 312 83.97 473 reject_vc 2 ALIGNMENT 134 Y12-18e08.q1k vc_1 1 217 2741 2958 F 217 88.48 473 reject_low 3 ALIGNMENT 134 Y12-18e08.q1k vc_2 1 217 2374 2591 F 217 88.48 473 reject_low 4 ALIGNMENT 256 Y12-18e09.p1k chr12 130 854 451618 452330 F 725 79.86 1472 accept_chi 1 ALIGNMENT 365 Y12-18e09.q1k chr07 969 152 726983 727792 C 818 83.13 1415 accept_chi 0 ALIGNMENT 101 Y12-18e09.p1k chr12 301 548 489755 490001 F 248 81.05 1472 reject_low 4 ALIGNMENT 184 Y12-18e09.q1k chr16 590 207 795391 795766 C 384 84.11 1415 reject_low 3 ALIGNMENT 256 Y12-18e09.p1k chr12 130 854 460755 461467 F 725 79.86 1472 accept_chi 2 ALIGNMENT 975 Y12-18e11.p1k chr12 26 1109 451513 452593 F 1084 97.23 1457 accept_chi 1 ALIGNMENT 337 Y12-18e11.q1k chr16 540 163 795389 795766 C 378 96.83 1333 reject_low 4 ALIGNMENT 975 Y12-18e11.p1k chr12 26 1109 460650 461730 F 1084 97.23 1457 accept_chi 2 ALIGNMENT 62 Y12-18e11.q1k chr16 925 850 794956 795031 C 76 93.42 1333 reject_low 4 ALIGNMENT 0 Y12-18e11.q1k chr16 849 541 795032 795388 C 309 0.00 1333 reject_low 4 ALIGNMENT 0 Y12-18e11.p1k chr12 62 301 489754 489753 F 240 0.00 1457 reject_low 3 ALIGNMENT 973 Y12-18e11.q1k chr07 1201 31 726693 727870 C 1171 95.30 1333 accept_chi 0 ALIGNMENT 719 Y12-18e11.p1k chr12 302 1091 489754 490543 F 790 96.96 1457 reject_low 3 ALIGNMENT 0 Y12-18e11.q1k chr16 162 62 795767 795766 C 101 0.00 1333 reject_low 4 ALIGNMENT 978 Y12-18e12.q1k chr07 1261 30 627789 629031 C 1232 94.40 1403 accept 0 ALIGNMENT 978 Y12-18e12.p1k chr07 27 1184 623045 624217 F 1158 95.77 1390 accept 0 ALIGNMENT 958 Y12-18e13.p1k chr11 1169 28 91672 92819 C 1142 95.45 1401 accept 0 ALIGNMENT 917 Y12-18e13.q1k chr11 37 1161 88551 89689 F 1125 95.64 1283 accept 0 ALIGNMENT 1033 Y12-18e14.p1k chr07 1226 20 251577 252796 C 1207 96.44 1396 accept 0 ALIGNMENT 978 Y12-18e14.q1k chr07 36 1167 248845 249995 F 1132 96.82 1345 accept 0 ALIGNMENT 991 Y12-18e15.p1k chr02 1172 19 106549 107719 C 1154 96.10 1362 accept 0 ALIGNMENT 965 Y12-18e15.q1k chr02 41 1225 104475 105668 F 1185 95.53 1353 accept 0 ALIGNMENT 943 Y12-18e16.p1k chr02 22 1117 330225 331343 F 1096 96.99 1333 accept 0 ALIGNMENT 1026 Y12-18e16.q1k chr02 1233 38 335128 336343 C 1196 96.32 1402 accept 0 ALIGNMENT 1027 Y12-18e17.q1k chr15 30 1217 601128 602323 F 1188 96.80 1274 accept 0 ALIGNMENT 1021 Y12-18e17.p1k chr15 1209 18 604456 605657 C 1192 96.48 1389 accept 0 ALIGNMENT 855 Y12-18e18.q1k chr09 42 1113 367679 368789 F 1072 94.03 1280 accept 0 ALIGNMENT 955 Y12-18e18.p1k chr09 1143 20 371139 372273 C 1124 96.44 1369 accept 0 ALIGNMENT 1015 Y12-18e19.q1k chr04 26 1268 1471436 1472679 F 1243 95.41 1276 accept 0 ALIGNMENT 888 Y12-18e19.p1k chr04 1038 23 1473951 1474978 C 1016 97.83 1302 accept 0 ALIGNMENT 1030 Y12-18e20.q1k chr05 37 1203 366536 367718 F 1167 97.09 1338 accept 0 ALIGNMENT 1017 Y12-18e20.p1k chr05 1310 18 371739 373040 C 1293 94.90 1370 accept 0 ALIGNMENT 1014 Y12-18e21.q1k chr13 38 1129 15151 16243 F 1092 98.26 1247 accept 0 ALIGNMENT 1054 Y12-18e21.p1k chr13 1209 25 19923 21119 C 1185 96.88 1342 accept 0 ALIGNMENT 424 Y12-18e22.q1k chr16 39 761 776865 777562 F 723 89.63 1289 reject_low 1 ALIGNMENT 0 Y12-18e22.q1k chr16 762 895 777562 777561 F 134 0.00 1289 reject_low 1 ALIGNMENT 0 Y12-18e22.q1k chr16 62 307 781557 781556 F 246 0.00 1289 accept 0 ALIGNMENT 1058 Y12-18e22.p1k chr16 1324 21 784863 786168 C 1304 94.94 1367 accept 0 ALIGNMENT 671 Y12-18e22.q1k chr16 308 1148 781557 782410 F 841 94.65 1289 accept 0 ALIGNMENT 972 Y12-18e23.q1k chr04 41 1227 1506197 1507384 F 1187 94.86 1228 accept 0 ALIGNMENT 1084 Y12-18e23.p1k chr04 1274 25 1510294 1511551 C 1250 96.00 1321 accept 0 ALIGNMENT 119 Y12-18f01.q1k chr12 651 769 485696 485814 F 119 100.00 1364 reject_low 7 ALIGNMENT 0 Y12-18f01.q1k chr12 785 881 489481 489480 F 97 0.00 1364 reject_low 3 ALIGNMENT 119 Y12-18f01.q1k chr12 651 769 482044 482162 F 119 100.00 1364 reject_low 6 ALIGNMENT 0 Y12-18f01.q1k chr12 770 881 468930 468929 F 112 0.00 1364 reject_low 2 ALIGNMENT 0 Y12-18f01.q1k chr12 62 650 485696 485695 F 589 0.00 1364 reject_low 7 ALIGNMENT 0 Y12-18f01.q1k chr12 770 881 472582 472581 F 112 0.00 1364 reject_low 5 ALIGNMENT 0 Y12-18f01.q1k chr12 62 650 489348 489347 F 589 0.00 1364 reject_low 3 ALIGNMENT 0 Y12-18f01.q1k chr12 62 650 472464 472463 F 589 0.00 1364 reject_low 5 ALIGNMENT 94 Y12-18f01.q1k chr06 391 284 31622 31729 C 108 98.15 1364 reject_low 4 ALIGNMENT 1064 Y12-18f01.p1k chr12 1203 22 462093 463280 C 1182 96.79 1423 accept 0 ALIGNMENT 697 Y12-18f01.q1k chr12 39 769 468200 468930 F 731 99.59 1364 reject_low 2 ALIGNMENT 1064 Y12-18f01.p1k chr12 1203 22 452956 454143 C 1182 96.79 1423 reject_low 1 ALIGNMENT 119 Y12-18f01.q1k chr12 651 769 472464 472582 F 119 100.00 1364 reject_low 5 ALIGNMENT 0 Y12-18f01.q1k chr12 62 650 482044 482043 F 589 0.00 1364 reject_low 6 ALIGNMENT 0 Y12-18f01.q1k chr12 770 881 482162 482161 F 112 0.00 1364 reject_low 6 ALIGNMENT 0 Y12-18f01.q1k chr06 283 62 31730 31729 C 222 0.00 1364 reject_low 4 ALIGNMENT 128 Y12-18f01.q1k chr12 651 784 489348 489481 F 134 98.51 1364 reject_low 3 ALIGNMENT 0 Y12-18f01.q1k chr06 881 392 31623 31622 C 490 0.00 1364 reject_low 4 ALIGNMENT 0 Y12-18f01.q1k chr12 770 881 485814 485813 F 112 0.00 1364 reject_low 7 ALIGNMENT 912 Y12-18f01.q1k chr12 39 1149 459063 460201 F 1111 95.77 1364 accept 0 ALIGNMENT 972 Y12-18f02.q1k chr10 1209 37 445116 446298 C 1173 95.23 1349 accept 0 ALIGNMENT 667 Y12-18f02.p1k chr10 20 884 440762 441611 F 865 95.26 1413 accept 0 ALIGNMENT 246 Y12-18f03.p1k chr02 274 944 416050 416725 F 671 79.58 1372 reject_low 1 ALIGNMENT 706 Y12-18f03.p1k chr02 1099 266 163047 163902 C 834 96.16 1372 accept 0 ALIGNMENT 838 Y12-18f03.q1k chr02 33 1217 160115 161288 F 1185 91.31 1405 accept 0 ALIGNMENT 0 Y12-18f04.p1k chr04 205 836 18681 18680 F 632 0.00 1412 reject_low 1 ALIGNMENT 1007 Y12-18f04.p1k chr10 1219 21 726059 727262 C 1199 95.25 1412 accept 0 ALIGNMENT 56 Y12-18f04.p1k chr01 947 823 224551 224675 C 125 81.60 1412 reject_low 2 ALIGNMENT 984 Y12-18f04.q1k chr10 37 1238 723279 724493 F 1202 95.01 1363 accept 0 ALIGNMENT 0 Y12-18f04.p1k chr01 822 62 224676 224675 C 761 0.00 1412 reject_low 2 ALIGNMENT 80 Y12-18f04.p1k chr04 21 204 18498 18681 F 184 80.43 1412 reject_low 1 ALIGNMENT 929 Y12-18f05.p1k chr07 23 1086 593433 594500 F 1064 96.71 1384 accept 0 ALIGNMENT 980 Y12-18f05.q1k chr07 1191 35 596759 597925 C 1157 95.94 1376 accept 0 ALIGNMENT 666 Y12-18f06.p1k chr07 937 44 285457 286336 C 894 94.18 1475 accept 0 ALIGNMENT 732 Y12-18f07.p1k chr12 930 15 463520 464425 C 916 94.65 1588 accept 0 ALIGNMENT 0 Y12-18f07.q1k chr12 62 739 489754 489753 F 678 0.00 1463 reject_low 2 ALIGNMENT 823 Y12-18f07.q1k chr12 32 1171 460209 461343 F 1140 92.81 1463 accept 0 ALIGNMENT 732 Y12-18f07.p1k chr12 930 15 454383 455288 C 916 94.65 1588 reject_low 1 ALIGNMENT 0 Y12-18f07.q1k chr12 62 366 451419 451418 F 305 0.00 1463 reject_low 1 ALIGNMENT 236 Y12-18f07.q1k chr12 740 1171 489754 490174 F 432 87.50 1463 reject_low 2 ALIGNMENT 558 Y12-18f07.q1k chr12 367 1171 451419 452206 F 805 92.05 1463 reject_low 1 ALIGNMENT 0 Y12-18f09.p1k chr14 459 62 720318 720317 C 398 0.00 1492 reject_low 3 ALIGNMENT 910 Y12-18f09.p1k chr16 1193 22 378696 379848 C 1172 94.62 1492 accept 0 ALIGNMENT 25 Y12-18f09.p1k chr14 501 460 720276 720317 C 42 95.24 1492 reject_low 3 ALIGNMENT 0 Y12-18f09.p1k chr02 62 409 780344 780343 F 348 0.00 1492 reject_low 2 ALIGNMENT 25 Y12-18f09.p1k chr02 410 507 780344 780441 F 98 83.67 1492 reject_low 2 ALIGNMENT 0 Y12-18f09.p1k chr02 508 871 780441 780440 F 364 0.00 1492 reject_low 2 ALIGNMENT 1041 Y12-18f09.q1k chr16 36 1186 374103 375263 F 1151 97.65 1423 accept 0 ALIGNMENT 33 Y12-18f09.p1k chr15 434 495 236963 237024 F 62 95.16 1492 reject_low 1 ALIGNMENT 0 Y12-18f09.p1k chr14 871 502 720277 720276 C 370 0.00 1492 reject_low 3 ALIGNMENT 0 Y12-18f09.p1k chr15 62 433 236963 236962 F 372 0.00 1492 reject_low 1 ALIGNMENT 0 Y12-18f09.p1k chr15 496 871 237024 237023 F 376 0.00 1492 reject_low 1 ALIGNMENT 24 Y12-18f10.q1k chr11 453 376 131533 131610 C 78 78.21 1412 reject_low 1 ALIGNMENT 0 Y12-18f10.q1k chr11 119 62 131867 131866 C 58 0.00 1412 reject_low 1 ALIGNMENT 1036 Y12-18f10.q1k chr10 1180 36 106412 107562 C 1145 98.08 1412 accept 0 ALIGNMENT 52 Y12-18f10.q1k chr11 296 120 131690 131866 C 177 77.40 1412 reject_low 1 ALIGNMENT 976 Y12-18f10.p1k chr10 18 1146 101775 102911 F 1129 96.72 1362 accept 0 ALIGNMENT 0 Y12-18f10.q1k chr11 928 454 131534 131533 C 475 0.00 1412 reject_low 1 ALIGNMENT 0 Y12-18f10.q1k chr11 375 297 131611 131689 C 79 0.00 1412 reject_low 1 ALIGNMENT 967 Y12-18f12.q1k chr13 1122 37 126532 127625 C 1086 96.87 1366 accept 0 ALIGNMENT 982 Y12-18f13.p1k chr02 1118 19 764516 765627 C 1100 97.64 1358 accept 0 ALIGNMENT 1019 Y12-18f13.q1k chr02 37 1255 759855 761072 F 1219 95.16 1409 accept 0 ALIGNMENT 983 Y12-18f16.q1k chr14 1208 32 353723 354921 C 1177 95.58 1389 accept 0 ALIGNMENT 1032 Y12-18f16.p1k chr14 22 1268 349350 350613 F 1247 95.19 1402 accept 0 ALIGNMENT 1016 Y12-18f17.q1k chr05 41 1262 135969 137201 F 1222 95.99 1369 accept 0 ALIGNMENT 1002 Y12-18f17.p1k chr05 1276 28 139045 140308 C 1249 94.56 1383 accept 0 ALIGNMENT 902 Y12-18f18.q1k chr02 38 1022 666048 667047 F 985 98.17 1275 accept 0 ALIGNMENT 809 Y12-18f18.p1k chr02 1005 19 669858 670840 C 987 95.54 1370 accept 0 ALIGNMENT 1008 Y12-18f19.q1k chr03 43 1146 95295 96407 F 1104 97.55 1321 accept 0 ALIGNMENT 903 Y12-18f19.p1k chr03 1097 19 98282 99376 C 1079 95.64 1300 accept 0 ALIGNMENT 0 Y12-18f22.q1k chr14 604 62 96313 96312 C 543 0.00 1310 reject_low 1 ALIGNMENT 0 Y12-18f22.q1k chr13 62 808 587635 587634 F 747 0.00 1310 reject_low 5 ALIGNMENT 28 Y12-18f22.q1k chr16 886 824 897079 897142 C 63 93.65 1310 reject_low 6 ALIGNMENT 25 Y12-18f22.q1k chr09 902 837 105761 105826 C 66 89.39 1310 reject_low 8 ALIGNMENT 0 Y12-18f22.q1k chr09 836 62 105827 105826 C 775 0.00 1310 reject_low 8 ALIGNMENT 21 Y12-18f22.q1k chr06 890 834 186206 186262 C 57 92.98 1310 reject_low 11 ALIGNMENT 0 Y12-18f22.q1k chr07 62 835 431412 431411 F 774 0.00 1310 reject_low 7 ALIGNMENT 0 Y12-18f22.q1k chr13 62 840 86941 86940 F 779 0.00 1310 reject_low 2 ALIGNMENT 0 Y12-18f22.q1k chr04 62 823 778726 778725 F 762 0.00 1310 reject_low 4 ALIGNMENT 20 Y12-18f22.q1k chr07 836 922 431412 431499 F 87 87.36 1310 reject_low 7 ALIGNMENT 0 Y12-18f22.q1k chr11 62 835 382193 382192 F 774 0.00 1310 reject_low 12 ALIGNMENT 0 Y12-18f22.q1k chr01 835 884 192321 192320 F 50 0.00 1310 reject_low 3 ALIGNMENT 75 Y12-18f22.q1k chr14 683 605 96234 96312 C 79 98.73 1310 reject_low 1 ALIGNMENT 0 Y12-18f22.q1k chr10 835 62 470092 470091 C 774 0.00 1310 reject_low 10 ALIGNMENT 27 Y12-18f22.q1k chr04 824 933 778726 778834 F 110 87.27 1310 reject_low 4 ALIGNMENT 0 Y12-18f22.q1k chr16 823 62 897143 897142 C 762 0.00 1310 reject_low 6 ALIGNMENT 24 Y12-18f22.q1k chr13 809 881 587635 587707 F 73 87.67 1310 reject_low 5 ALIGNMENT 0 Y12-18f22.q1k chr14 884 684 96235 96234 C 201 0.00 1310 reject_low 1 ALIGNMENT 24 Y12-18f22.q1k chr13 841 1006 86941 87107 F 166 77.11 1310 reject_low 2 ALIGNMENT 20 Y12-18f22.q1k chr16 836 920 650476 650560 F 85 88.24 1310 reject_low 9 ALIGNMENT 1011 Y12-18f22.p1k chr15 19 1103 106773 107867 F 1085 98.71 1300 accept 0 ALIGNMENT 20 Y12-18f22.q1k chr11 836 883 382193 382239 F 48 95.83 1310 reject_low 12 ALIGNMENT 0 Y12-18f22.q1k chr01 62 784 192271 192270 F 723 0.00 1310 reject_low 3 ALIGNMENT 756 Y12-18f22.q1k chr15 879 37 110760 111600 C 843 97.86 1310 accept 0 ALIGNMENT 29 Y12-18f22.q1k chr01 785 834 192271 192321 F 50 94.00 1310 reject_low 3 ALIGNMENT 0 Y12-18f22.q1k chr16 62 835 650476 650475 F 774 0.00 1310 reject_low 9 ALIGNMENT 27 Y12-18f22.q1k chr10 890 836 470037 470091 C 55 98.18 1310 reject_low 10 ALIGNMENT 0 Y12-18f22.q1k chr06 833 62 186263 186262 C 772 0.00 1310 reject_low 11 ALIGNMENT 991 Y12-18f23.p1k chr11 21 1200 357640 358836 F 1180 96.10 1330 accept 0 ALIGNMENT 984 Y12-18f23.q1k chr11 1265 44 360528 361757 C 1222 94.76 1282 accept 0 ALIGNMENT 425 Y12-18g01.p1k chr02 44 866 759222 760037 F 823 85.05 1412 accept_chi 1 ALIGNMENT 653 Y12-18g01.q1k chr16 45 855 649104 649903 F 811 94.82 1465 accept_chi 0 ALIGNMENT 992 Y12-18g02.q1k chr08 1235 36 496844 498059 C 1200 94.67 1436 accept 0 ALIGNMENT 880 Y12-18g02.p1k chr08 22 1060 493750 494802 F 1039 95.96 1374 accept 0 ALIGNMENT 830 Y12-18g04.p1k chr12 1096 26 403920 404980 C 1071 94.02 1461 accept 0 ALIGNMENT 717 Y12-18g04.q1k chr12 26 966 400355 401279 F 941 93.94 1437 accept 0 ALIGNMENT 951 Y12-18g05.q1k chr16 32 1112 419860 420944 F 1081 97.32 1298 accept 0 ALIGNMENT 983 Y12-18g05.p1k chr16 1159 17 422257 423396 C 1143 96.68 1449 accept 0 ALIGNMENT 960 Y12-18g06.p1k chr02 1164 17 383858 384999 C 1148 96.34 1424 accept 0 ALIGNMENT 923 Y12-18g06.q1k chr02 4 1087 378668 379761 F 1084 96.22 1287 accept 0 ALIGNMENT 977 Y12-18g07.q1k chr13 1177 17 733459 734609 C 1161 96.47 1347 accept 0 ALIGNMENT 960 Y12-18g07.p1k chr13 22 1180 729981 731156 F 1159 95.43 1394 accept 0 ALIGNMENT 99 Y12-18g08.p1k chr15 902 797 274673 274778 C 106 98.11 1452 reject_low 2 ALIGNMENT 925 Y12-18g08.q1k chr12 31 1102 780852 781935 F 1072 97.11 1350 accept 0 ALIGNMENT 0 Y12-18g08.p1k chr06 62 796 191496 191495 F 735 0.00 1452 reject_low 1 ALIGNMENT 0 Y12-18g08.p1k chr15 796 62 274779 274778 C 735 0.00 1452 reject_low 2 ALIGNMENT 94 Y12-18g08.p1k chr04 801 902 1150833 1150933 F 102 98.04 1452 reject_low 3 ALIGNMENT 0 Y12-18g08.p1k chr04 62 800 1150833 1150832 F 739 0.00 1452 reject_low 3 ALIGNMENT 99 Y12-18g08.p1k chr06 797 902 191496 191601 F 106 98.11 1452 reject_low 1 ALIGNMENT 987 Y12-18g08.p1k chr12 1275 17 783984 785240 C 1259 93.73 1452 accept 0 ALIGNMENT 998 Y12-18g10.q1k chr16 1191 28 657004 658172 C 1164 96.74 1366 accept 0 ALIGNMENT 1033 Y12-18g10.p1k chr16 18 1204 651826 653029 F 1187 96.55 1402 accept 0 ALIGNMENT 0 Y12-18g12.q1k chr11 898 367 163033 163032 C 532 0.00 1355 reject_low 10 ALIGNMENT 63 Y12-18g12.q1k chr11 366 235 163032 163165 C 132 84.09 1355 reject_low 10 ALIGNMENT 0 Y12-18g12.q1k chr06 898 297 143868 143867 C 602 0.00 1355 reject_low 21 ALIGNMENT 0 Y12-18g12.q1k chr07 232 62 876278 876277 C 171 0.00 1355 reject_low 12 ALIGNMENT 0 Y12-18g12.q1k chr16 228 62 776408 776407 C 167 0.00 1355 reject_low 20 ALIGNMENT 65 Y12-18g12.q1k chr08 359 226 133868 134002 C 134 85.07 1355 reject_low 9 ALIGNMENT 0 Y12-18g12.q1k chr16 898 360 776279 776278 C 539 0.00 1355 reject_low 20 ALIGNMENT 0 Y12-18g12.q1k chr10 898 360 472581 472580 C 539 0.00 1355 reject_low 8 ALIGNMENT 0 Y12-18g12.q1k chr13 62 225 357004 357003 F 164 0.00 1355 reject_low 4 ALIGNMENT 0 Y12-18g12.q1k chr10 235 62 472705 472704 C 174 0.00 1355 reject_low 8 ALIGNMENT 0 Y12-18g12.q1k chr06 234 62 143929 143928 C 173 0.00 1355 reject_low 21 ALIGNMENT 0 Y12-18g12.q1k chr07 225 62 402294 402293 C 164 0.00 1355 reject_low 3 ALIGNMENT 71 Y12-18g12.q1k chr13 226 359 362586 362720 F 134 86.57 1355 reject_low 5 ALIGNMENT 0 Y12-18g12.q1k chr08 225 62 134003 134002 C 164 0.00 1355 reject_low 9 ALIGNMENT 0 Y12-18g12.q1k chr07 898 360 115140 115139 C 539 0.00 1355 reject_low 19 ALIGNMENT 0 Y12-18g12.q1k chr04 225 62 1151361 1151360 C 164 0.00 1355 reject_low 6 ALIGNMENT 0 Y12-18g12.q1k chr16 246 62 804635 804634 C 185 0.00 1355 reject_low 18 ALIGNMENT 0 Y12-18g12.q1k chr16 898 367 804520 804519 C 532 0.00 1355 reject_low 18 ALIGNMENT 0 Y12-18g12.q1k chr08 898 360 133869 133868 C 539 0.00 1355 reject_low 9 ALIGNMENT 0 Y12-18g12.q1k chr11 234 62 163166 163165 C 173 0.00 1355 reject_low 10 ALIGNMENT 71 Y12-18g12.q1k chr10 359 236 472580 472704 C 124 87.90 1355 reject_low 8 ALIGNMENT 970 Y12-18g12.q1k chr05 1139 37 175930 177045 C 1103 97.46 1355 accept 0 ALIGNMENT 53 Y12-18g12.q1k chr16 366 247 804519 804634 C 120 85.00 1355 reject_low 18 ALIGNMENT 0 Y12-18g12.q1k chr01 62 225 160239 160238 F 164 0.00 1355 reject_low 2 ALIGNMENT 43 Y12-18g12.q1k chr06 296 235 143867 143928 C 62 91.94 1355 reject_low 21 ALIGNMENT 0 Y12-18g12.q1k chr13 360 898 378418 378417 F 539 0.00 1355 reject_low 15 ALIGNMENT 64 Y12-18g12.q1k chr05 359 226 138419 138553 C 134 85.07 1355 reject_low 11 ALIGNMENT 0 Y12-18g12.q1k chr07 235 62 541680 541679 C 174 0.00 1355 reject_low 7 ALIGNMENT 0 Y12-18g12.q1k chr13 360 898 372830 372829 F 539 0.00 1355 reject_low 14 ALIGNMENT 0 Y12-18g12.q1k chr13 62 245 378304 378303 F 184 0.00 1355 reject_low 15 ALIGNMENT 0 Y12-18g12.q1k chr10 234 62 541002 541001 C 173 0.00 1355 reject_low 16 ALIGNMENT 0 Y12-18g12.q1k chr05 898 360 138420 138419 C 539 0.00 1355 reject_low 11 ALIGNMENT 0 Y12-18g12.q1k chr01 360 898 160373 160372 F 539 0.00 1355 reject_low 2 ALIGNMENT 0 Y12-18g12.q1k chr03 898 367 149667 149666 C 532 0.00 1355 reject_low 13 ALIGNMENT 49 Y12-18g12.q1k chr07 359 235 115139 115264 C 125 81.60 1355 reject_low 19 ALIGNMENT 0 Y12-18g12.q1k chr05 225 62 138554 138553 C 164 0.00 1355 reject_low 11 ALIGNMENT 60 Y12-18g12.q1k chr03 366 231 149666 149801 C 136 84.56 1355 reject_low 13 ALIGNMENT 0 Y12-18g12.q1k chr13 360 898 357138 357137 F 539 0.00 1355 reject_low 4 ALIGNMENT 0 Y12-18g12.q1k chr05 62 171 138584 138583 F 110 0.00 1355 reject_low 1 ALIGNMENT 64 Y12-18g12.q1k chr10 357 235 540878 541001 C 123 86.18 1355 reject_low 16 ALIGNMENT 67 Y12-18g12.q1k chr04 357 226 1151229 1151360 C 132 86.36 1355 reject_low 6 ALIGNMENT 0 Y12-18g12.q1k chr08 235 62 466854 466853 C 174 0.00 1355 reject_low 17 ALIGNMENT 54 Y12-18g12.q1k chr08 366 236 466722 466853 C 131 82.44 1355 reject_low 17 ALIGNMENT 68 Y12-18g12.q1k chr07 359 233 876149 876277 C 127 86.61 1355 reject_low 12 ALIGNMENT 0 Y12-18g12.q1k chr08 898 367 466723 466722 C 532 0.00 1355 reject_low 17 ALIGNMENT 0 Y12-18g12.q1k chr05 201 898 138612 138611 F 698 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-18g12.q1k chr07 898 360 402160 402159 C 539 0.00 1355 reject_low 3 ALIGNMENT 0 Y12-18g12.q1k chr13 62 245 372716 372715 F 184 0.00 1355 reject_low 14 ALIGNMENT 0 Y12-18g12.q1k chr13 360 898 362720 362719 F 539 0.00 1355 reject_low 5 ALIGNMENT 0 Y12-18g12.q1k chr07 234 62 115265 115264 C 173 0.00 1355 reject_low 19 ALIGNMENT 44 Y12-18g12.q1k chr16 359 229 776278 776407 C 131 81.68 1355 reject_low 20 ALIGNMENT 0 Y12-18g12.q1k chr04 898 358 1151230 1151229 C 541 0.00 1355 reject_low 6 ALIGNMENT 71 Y12-18g12.q1k chr13 226 359 357004 357138 F 134 86.57 1355 reject_low 4 ALIGNMENT 0 Y12-18g12.q1k chr13 62 225 362586 362585 F 164 0.00 1355 reject_low 5 ALIGNMENT 65 Y12-18g12.q1k chr13 246 359 372716 372830 F 114 87.72 1355 reject_low 14 ALIGNMENT 71 Y12-18g12.q1k chr07 359 226 402159 402293 C 134 86.57 1355 reject_low 3 ALIGNMENT 965 Y12-18g12.p1k chr05 22 1107 172830 173934 F 1086 97.51 1360 accept 0 ALIGNMENT 0 Y12-18g12.q1k chr07 898 360 876150 876149 C 539 0.00 1355 reject_low 12 ALIGNMENT 65 Y12-18g12.q1k chr13 246 359 378304 378418 F 114 87.72 1355 reject_low 15 ALIGNMENT 0 Y12-18g12.q1k chr07 898 360 541556 541555 C 539 0.00 1355 reject_low 7 ALIGNMENT 0 Y12-18g12.q1k chr10 898 358 540879 540878 C 541 0.00 1355 reject_low 16 ALIGNMENT 71 Y12-18g12.q1k chr07 359 236 541555 541679 C 124 87.90 1355 reject_low 7 ALIGNMENT 74 Y12-18g12.q1k chr01 226 359 160239 160373 F 134 87.31 1355 reject_low 2 ALIGNMENT 21 Y12-18g12.q1k chr05 172 200 138584 138612 F 29 93.10 1355 reject_low 1 ALIGNMENT 0 Y12-18g12.q1k chr03 230 62 149802 149801 C 169 0.00 1355 reject_low 13 ALIGNMENT 0 Y12-18g13.p1k chr02 682 879 221341 221340 F 198 0.00 1349 reject_low 12 ALIGNMENT 25 Y12-18g13.p1k chr10 681 406 354482 354758 C 276 72.46 1349 reject_low 11 ALIGNMENT 0 Y12-18g13.p1k chr10 879 810 390954 390953 C 70 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-18g13.p1k chr13 405 62 362894 362893 C 344 0.00 1349 reject_low 7 ALIGNMENT 27 Y12-18g13.p1k chr08 681 406 549338 549613 C 276 72.83 1349 reject_low 8 ALIGNMENT 74 Y12-18g13.p1k chr15 724 803 976409 976488 F 80 97.50 1349 reject_low 2 ALIGNMENT 0 Y12-18g13.p1k chr08 879 682 549339 549338 C 198 0.00 1349 reject_low 8 ALIGNMENT 26 Y12-18g13.p1k chr11 681 406 457815 458090 C 276 72.46 1349 reject_low 10 ALIGNMENT 0 Y12-18g13.p1k chr02 62 405 221064 221063 F 344 0.00 1349 reject_low 12 ALIGNMENT 77 Y12-18g13.p1k chr10 809 730 390953 391032 C 80 98.75 1349 reject_low 3 ALIGNMENT 29 Y12-18g13.p1k chr07 406 681 931715 931990 F 276 73.19 1349 reject_low 6 ALIGNMENT 0 Y12-18g13.p1k chr07 879 682 817431 817430 C 198 0.00 1349 reject_low 5 ALIGNMENT 0 Y12-18g13.p1k chr13 879 682 362619 362618 C 198 0.00 1349 reject_low 7 ALIGNMENT 0 Y12-18g13.p1k chr10 387 62 355086 355085 C 326 0.00 1349 reject_low 9 ALIGNMENT 0 Y12-18g13.p1k chr10 879 638 354835 354834 C 242 0.00 1349 reject_low 9 ALIGNMENT 0 Y12-18g13.p1k chr13 879 814 572873 572872 C 66 0.00 1349 reject_low 1 ALIGNMENT 0 Y12-18g13.p1k chr10 729 62 391033 391032 C 668 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-18g13.p1k chr07 62 405 931715 931714 F 344 0.00 1349 reject_low 6 ALIGNMENT 0 Y12-18g13.p1k chr11 879 682 457816 457815 C 198 0.00 1349 reject_low 10 ALIGNMENT 0 Y12-18g13.p1k chr10 405 62 354759 354758 C 344 0.00 1349 reject_low 11 ALIGNMENT 0 Y12-18g13.p1k chr11 405 62 458091 458090 C 344 0.00 1349 reject_low 10 ALIGNMENT 29 Y12-18g13.p1k chr13 681 406 362618 362893 C 276 72.83 1349 reject_low 7 ALIGNMENT 0 Y12-18g13.p1k chr07 405 62 817706 817705 C 344 0.00 1349 reject_low 5 ALIGNMENT 32 Y12-18g13.p1k chr07 681 406 817430 817705 C 276 73.19 1349 reject_low 5 ALIGNMENT 0 Y12-18g13.p1k chr15 62 723 976409 976408 F 662 0.00 1349 reject_low 2 ALIGNMENT 984 Y12-18g13.q1k chr10 1151 39 425049 426167 C 1113 96.32 1305 accept 0 ALIGNMENT 0 Y12-18g13.p1k chr07 682 879 931990 931989 F 198 0.00 1349 reject_low 6 ALIGNMENT 22 Y12-18g13.p1k chr02 406 681 221064 221341 F 276 72.10 1349 reject_low 12 ALIGNMENT 0 Y12-18g13.p1k chr13 730 62 572955 572954 C 669 0.00 1349 reject_low 1 ALIGNMENT 965 Y12-18g13.p1k chr10 20 1117 422140 423242 F 1098 97.54 1349 accept 0 ALIGNMENT 0 Y12-18g13.p1k chr10 879 682 354483 354482 C 198 0.00 1349 reject_low 11 ALIGNMENT 0 Y12-18g13.p1k chr04 62 730 1175821 1175820 F 669 0.00 1349 reject_low 4 ALIGNMENT 0 Y12-18g13.p1k chr15 804 879 976488 976487 F 76 0.00 1349 reject_low 2 ALIGNMENT 0 Y12-18g13.p1k chr04 804 879 1175893 1175892 F 76 0.00 1349 reject_low 4 ALIGNMENT 73 Y12-18g13.p1k chr04 731 803 1175821 1175893 F 73 100.00 1349 reject_low 4 ALIGNMENT 0 Y12-18g13.p1k chr08 405 62 549614 549613 C 344 0.00 1349 reject_low 8 ALIGNMENT 80 Y12-18g13.p1k chr13 813 731 572872 572954 C 83 98.80 1349 reject_low 1 ALIGNMENT 22 Y12-18g13.p1k chr10 637 388 354834 355085 C 250 72.80 1349 reject_low 9 ALIGNMENT 26 Y12-18g14.q1k chr16 108 47 897091 897152 C 62 90.32 1367 reject_low 5 ALIGNMENT 0 Y12-18g14.q1k chr16 120 866 650541 650540 F 747 0.00 1367 reject_low 1 ALIGNMENT 23 Y12-18g14.q1k chr15 102 42 1037514 1037574 C 61 86.89 1367 reject_low 6 ALIGNMENT 0 Y12-18g14.q1k chr13 120 866 587679 587678 F 747 0.00 1367 reject_low 9 ALIGNMENT 25 Y12-18g14.q1k chr09 119 77 105786 105828 C 43 100.00 1367 reject_low 8 ALIGNMENT 30 Y12-18g14.q1k chr04 45 119 778738 778812 F 75 90.67 1367 reject_low 3 ALIGNMENT 22 Y12-18g14.q1k chr07 41 118 431401 431482 F 78 87.18 1367 reject_low 4 ALIGNMENT 0 Y12-18g14.q1k chr13 120 866 87028 87027 F 747 0.00 1367 reject_low 2 ALIGNMENT 988 Y12-18g14.p1k chr02 1168 19 544587 545762 C 1150 96.61 1335 accept 0 ALIGNMENT 0 Y12-18g14.q1k chr04 120 866 778812 778811 F 747 0.00 1367 reject_low 3 ALIGNMENT 0 Y12-18g14.q1k chr15 866 103 1037515 1037514 C 764 0.00 1367 reject_low 6 ALIGNMENT 33 Y12-18g14.q1k chr16 45 119 650467 650541 F 75 92.00 1367 reject_low 1 ALIGNMENT 0 Y12-18g14.q1k chr05 866 120 142934 142933 C 747 0.00 1367 reject_low 7 ALIGNMENT 31 Y12-18g14.q1k chr13 44 119 86953 87028 F 76 90.79 1367 reject_low 2 ALIGNMENT 0 Y12-18g14.q1k chr16 866 109 897092 897091 C 758 0.00 1367 reject_low 5 ALIGNMENT 22 Y12-18g14.q1k chr13 69 119 587629 587679 F 51 94.12 1367 reject_low 9 ALIGNMENT 0 Y12-18g14.q1k chr07 119 866 431482 431481 F 748 0.00 1367 reject_low 4 ALIGNMENT 935 Y12-18g14.q1k chr02 43 1137 541563 542657 F 1095 96.89 1367 accept 0 ALIGNMENT 0 Y12-18g14.q1k chr09 76 62 105829 105828 C 15 0.00 1367 reject_low 8 ALIGNMENT 24 Y12-18g14.q1k chr05 119 46 142933 143006 C 74 87.84 1367 reject_low 7 ALIGNMENT 0 Y12-18g14.q1k chr09 866 120 105787 105786 C 747 0.00 1367 reject_low 8 ALIGNMENT 1017 Y12-18g16.q1k chr10 1225 39 461924 463122 C 1187 95.70 1381 accept 0 ALIGNMENT 917 Y12-18g16.p1k chr10 18 1073 457344 458418 F 1056 97.25 1341 accept 0 ALIGNMENT 963 Y12-18g17.q1k chr08 1105 39 190924 192000 C 1067 97.19 1259 accept 0 ALIGNMENT 960 Y12-18g17.p1k chr08 23 1152 187790 188931 F 1130 96.37 1368 accept 0 ALIGNMENT 1003 Y12-18g18.p1k chr11 1252 29 191437 192674 C 1224 95.59 1381 accept 0 ALIGNMENT 951 Y12-18g18.q1k chr11 39 1164 189322 190452 F 1126 96.09 1298 accept 0 ALIGNMENT 419 Y12-18g19.p1k chr04 845 38 1474156 1474960 C 808 86.39 1489 accept 0 ALIGNMENT 926 Y12-18g21.p1k chr12 23 1043 457415 458454 F 1021 97.94 1294 accept 0 ALIGNMENT 0 Y12-18g21.q1k chr12 894 678 489755 489754 C 217 0.00 1249 reject_low 3 ALIGNMENT 620 Y12-18g21.q1k chr12 677 36 489754 490395 C 642 99.07 1249 reject_low 3 ALIGNMENT 926 Y12-18g21.p1k chr12 23 1043 466552 467591 F 1021 97.94 1294 reject_low 1 ALIGNMENT 912 Y12-18g21.q1k chr12 1045 36 451419 452427 C 1010 97.13 1249 reject_low 2 ALIGNMENT 922 Y12-18g21.q1k chr12 1113 36 460493 461564 C 1078 95.92 1249 accept 0 ALIGNMENT 1021 Y12-18g22.q1k chr16 1301 39 867392 868653 C 1263 95.57 1304 accept 0 ALIGNMENT 1005 Y12-18g22.p1k chr16 21 1174 864477 865637 F 1154 96.71 1318 accept 0 ALIGNMENT 1028 Y12-18g23.p1k chr12 19 1267 451727 452976 F 1249 94.88 1339 accept 0 ALIGNMENT 756 Y12-18g23.p1k chr12 77 865 489754 490543 F 789 98.86 1339 reject_low 2 ALIGNMENT 1028 Y12-18g23.p1k chr12 19 1267 460864 462113 F 1249 94.88 1339 accept 1 ALIGNMENT 1033 Y12-18g23.q1k chr12 1187 28 456325 457476 C 1160 97.24 1189 accept 0 ALIGNMENT 0 Y12-18g23.p1k chr12 62 76 489754 489753 F 15 0.00 1339 reject_low 2 ALIGNMENT 1033 Y12-18g23.q1k chr12 1187 28 465462 466613 C 1160 97.24 1189 accept 1 ALIGNMENT 932 Y12-18h01.q1k chr16 1145 35 160772 161897 C 1111 95.23 1382 accept 0 ALIGNMENT 1011 Y12-18h01.p1k chr16 22 1205 158796 159995 F 1184 96.11 1398 accept 0 ALIGNMENT 964 Y12-18h02.q1k chr12 32 1139 326950 328067 F 1108 96.21 1390 accept 0 ALIGNMENT 1003 Y12-18h03.q1k chr05 39 1246 462943 464146 F 1208 95.03 1378 accept 0 ALIGNMENT 1043 Y12-18h04.q1k chr16 1253 34 226998 228233 C 1220 95.90 1356 accept 0 ALIGNMENT 991 Y12-18h04.p1k chr16 20 1135 224154 225277 F 1116 97.40 1380 accept 0 ALIGNMENT 995 Y12-18h06.q1k chr16 30 1214 228621 229810 F 1185 95.53 1387 accept 0 ALIGNMENT 0 Y12-18h07.p1k chr07 308 784 712549 712548 F 477 0.00 1438 reject_low 3 ALIGNMENT 0 Y12-18h07.p1k chr08 784 309 146324 146323 C 476 0.00 1438 reject_low 14 ALIGNMENT 0 Y12-18h07.p1k chr11 784 308 202291 202290 C 477 0.00 1438 reject_low 5 ALIGNMENT 0 Y12-18h07.p1k chr03 308 784 169063 169062 F 477 0.00 1438 reject_low 20 ALIGNMENT 0 Y12-18h07.p1k chr03 176 175 168593 168931 F 0 0.00 1438 reject_low 20 ALIGNMENT 232 Y12-18h07.p1k chr14 43 308 726308 726576 F 266 97.37 1438 reject_low 10 ALIGNMENT 238 Y12-18h07.p1k chr14 43 307 546812 547078 F 265 98.11 1438 reject_low 6 ALIGNMENT 893 Y12-18h07.p1k chr09 43 1143 205290 206394 F 1101 94.91 1438 ambiguous_trans 1 ALIGNMENT 0 Y12-18h07.p1k chr01 308 784 182953 182952 F 477 0.00 1438 reject_low 2 ALIGNMENT 0 Y12-18h07.p1k chr14 309 784 726576 726575 F 476 0.00 1438 reject_low 10 ALIGNMENT 0 Y12-18h07.p1k chr04 308 784 668431 668430 F 477 0.00 1438 reject_low 17 ALIGNMENT 226 Y12-18h07.p1k chr07 307 43 319426 319692 C 265 96.60 1438 reject_low 15 ALIGNMENT 225 Y12-18h07.p1k chr16 43 307 769390 769657 F 265 96.60 1438 reject_low 18 ALIGNMENT 107 Y12-18h07.p1k chr03 43 178 168457 168595 F 136 94.85 1438|0,3 reject_low 20 ALIGNMENT 0 Y12-18h07.p1k chr14 308 784 547078 547077 F 477 0.00 1438 reject_low 6 ALIGNMENT 241 Y12-18h07.p1k chr07 43 307 712283 712549 F 265 98.49 1438 reject_low 3 ALIGNMENT 225 Y12-18h07.p1k chr04 43 307 668164 668431 F 265 96.60 1438 reject_low 17 ALIGNMENT 129 Y12-18h07.p1k chr03 173 307 168929 169063 F 135 100.00 1438|3,0 reject_low 20 ALIGNMENT 232 Y12-18h07.p1k chr07 43 308 736060 736328 F 266 97.37 1438 reject_low 9 ALIGNMENT 0 Y12-18h07.p1k chr16 308 784 856881 856880 F 477 0.00 1438 reject_low 7 ALIGNMENT 0 Y12-18h07.p1k chr04 784 309 945949 945948 C 476 0.00 1438 reject_low 8 ALIGNMENT 226 Y12-18h07.p1k chr15 43 307 854346 854612 F 265 96.98 1438 reject_low 16 ALIGNMENT 0 Y12-18h07.p1k chr05 784 309 492434 492433 C 476 0.00 1438 reject_low 12 ALIGNMENT 0 Y12-18h07.p1k chr07 784 308 319427 319426 C 477 0.00 1438 reject_low 15 ALIGNMENT 234 Y12-18h07.p1k chr16 43 307 856614 856881 F 265 97.74 1438 reject_low 7 ALIGNMENT 230 Y12-18h07.p1k chr05 308 54 492433 492689 C 255 98.04 1438 reject_low 12 ALIGNMENT 0 Y12-18h07.p1k chr05 784 308 434628 434627 C 477 0.00 1438 reject_low 11 ALIGNMENT 0 Y12-18h07.p1k chr12 308 784 374339 374338 F 477 0.00 1438 reject_low 19 ALIGNMENT 232 Y12-18h07.p1k chr04 308 43 945948 946216 C 266 97.37 1438 reject_low 8 ALIGNMENT 0 Y12-18h07.p1k chr09 308 784 210644 210643 F 477 0.00 1438 reject_low 4 ALIGNMENT 231 Y12-18h07.p1k chr05 307 43 434627 434894 C 265 97.36 1438 reject_low 11 ALIGNMENT 0 Y12-18h07.p1k chr05 784 308 249930 249929 C 477 0.00 1438 reject_low 13 ALIGNMENT 241 Y12-18h07.p1k chr11 307 43 202290 202556 C 265 98.49 1438 reject_low 5 ALIGNMENT 0 Y12-18h07.p1k chr15 308 784 854612 854611 F 477 0.00 1438 reject_low 16 ALIGNMENT 1003 Y12-18h07.q1k chr07 1270 34 710951 712189 C 1237 95.07 1431 ambiguous_trans 0 ALIGNMENT 996 Y12-18h07.q1k chr09 1259 34 209058 210284 C 1226 95.19 1431 ambiguous_trans 1 ALIGNMENT 892 Y12-18h07.p1k chr07 43 1147 707272 708380 F 1105 94.75 1438 ambiguous_trans 0 ALIGNMENT 226 Y12-18h07.p1k chr08 308 43 146323 146591 C 266 96.62 1438 reject_low 14 ALIGNMENT 228 Y12-18h07.p1k chr05 307 43 249929 250196 C 265 96.98 1438 reject_low 13 ALIGNMENT 217 Y12-18h07.p1k chr12 43 307 374073 374339 F 265 95.85 1438 reject_low 19 ALIGNMENT 0 Y12-18h07.p1k chr07 309 784 736328 736327 F 476 0.00 1438 reject_low 9 ALIGNMENT 241 Y12-18h07.p1k chr09 43 307 210378 210644 F 265 98.49 1438 reject_low 4 ALIGNMENT 241 Y12-18h07.p1k chr01 43 307 182687 182953 F 265 98.49 1438 reject_low 2 ALIGNMENT 0 Y12-18h07.p1k chr16 308 784 769657 769656 F 477 0.00 1438 reject_low 18 ALIGNMENT 1001 Y12-18h08.p1k chr15 19 1123 513307 514423 F 1105 97.65 1385 accept 0 ALIGNMENT 937 Y12-18h08.q1k chr15 1089 29 515964 517035 C 1061 97.64 1380 accept 0 ALIGNMENT 431 Y12-18h09.q1k chr16 931 27 334370 335266 C 905 84.86 1427 accept 0 ALIGNMENT 935 Y12-18h10.p1k chr11 25 1140 627774 628905 F 1116 95.97 1369 accept 0 ALIGNMENT 947 Y12-18h10.q1k chr11 1130 33 631923 633017 C 1098 96.81 1405 accept 0 ALIGNMENT 998 Y12-18h11.q1k chr12 39 1196 316067 317242 F 1158 96.03 1361 accept 0 ALIGNMENT 0 Y12-18h12.q1k chr12 337 831 366145 366144 F 495 0.00 1362 reject_low 18 ALIGNMENT 0 Y12-18h12.q1k chr12 153 178 365953 365986 F 26 0.00 1362 reject_low 18 ALIGNMENT 0 Y12-18h12.q1k chr03 494 495 168382 169066 C 0 0.00 1362 accept 0 ALIGNMENT 37 Y12-18h12.q1k chr09 336 179 246217 246374 C 158 77.85 1362 reject_low 20 ALIGNMENT 0 Y12-18h12.q1k chr16 831 350 62377 62376 C 482 0.00 1362 reject_low 19 ALIGNMENT 0 Y12-18h12.q1k chr03 831 160 169394 169393 C 672 0.00 1362 reject_low 13 ALIGNMENT 0 Y12-18h12.q1k chr03 362 363 169199 169541 C 0 0.00 1362 accept 0 ALIGNMENT 0 Y12-18h12.q1k chr09 89 62 246474 246473 C 28 0.00 1362 reject_low 20 ALIGNMENT 30 Y12-18h12.q1k chr16 151 87 62584 62648 C 65 83.08 1362 reject_low 19 ALIGNMENT 34 Y12-18h12.q1k chr12 336 87 656412 656671 C 250 74.40 1362 reject_low 17 ALIGNMENT 0 Y12-18h12.q1k chr07 86 62 735805 735804 C 25 0.00 1362 reject_low 8 ALIGNMENT 119 Y12-18h12.q1k chr03 497 360 169064 169201 C 138 97.83 1362|3,3 accept 0 ALIGNMENT 300 Y12-18h12.q1k chr03 364 36 169540 169868 C 329 98.78 1362|2,0 accept 0 ALIGNMENT 37 Y12-18h12.q1k chr04 278 87 1151087 1151286 C 192 76.56 1362 reject_low 15 ALIGNMENT 67 Y12-18h12.q1k chr02 509 586 350825 350902 F 78 96.15 1362 reject_low 9 ALIGNMENT 0 Y12-18h12.q1k chr16 86 62 62649 62648 C 25 0.00 1362 reject_low 19 ALIGNMENT 0 Y12-18h12.q1k chr04 584 831 521042 521041 F 248 0.00 1362 reject_low 7 ALIGNMENT 82 Y12-18h12.q1k chr12 179 336 365987 366145 F 158 86.08 1362 reject_low 18 ALIGNMENT 0 Y12-18h12.q1k chr04 508 62 645220 645219 C 447 0.00 1362 reject_low 5 ALIGNMENT 0 Y12-18h12.q1k chr05 508 62 131154 131153 C 447 0.00 1362 reject_low 11 ALIGNMENT 0 Y12-18h12.q1k chr02 587 831 350902 350901 F 245 0.00 1362 reject_low 9 ALIGNMENT 42 Y12-18h12.q1k chr16 349 179 62376 62546 C 171 78.36 1362 reject_low 19 ALIGNMENT 0 Y12-18h12.q1k chr04 831 279 1151088 1151087 C 553 0.00 1362 reject_low 15 ALIGNMENT 70 Y12-18h12.q1k chr04 586 509 802720 802797 C 78 97.44 1362 reject_low 6 ALIGNMENT 64 Y12-18h12.q1k chr05 586 509 131076 131153 C 78 94.87 1362 reject_low 11 ALIGNMENT 0 Y12-18h12.q1k chr03 348 831 168940 168939 F 484 0.00 1362 reject_low 16 ALIGNMENT 74 Y12-18h12.q1k chr05 507 585 250283 250361 F 79 98.73 1362 reject_low 4 ALIGNMENT 0 Y12-18h12.q1k chr09 178 152 246375 246411 C 27 0.00 1362 reject_low 20 ALIGNMENT 0 Y12-18h12.q1k chr02 62 508 350825 350824 F 447 0.00 1362 reject_low 9 ALIGNMENT 0 Y12-18h12.q1k chr04 831 586 645144 645143 C 246 0.00 1362 reject_low 5 ALIGNMENT 0 Y12-18h12.q1k chr04 62 508 520968 520967 F 447 0.00 1362 reject_low 7 ALIGNMENT 33 Y12-18h12.q1k chr03 87 347 168669 168940 F 261 74.33 1362 reject_low 16 ALIGNMENT 0 Y12-18h12.q1k chr04 86 62 1151287 1151286 C 25 0.00 1362 reject_low 15 ALIGNMENT 0 Y12-18h12.q1k chr12 62 88 365887 365886 F 27 0.00 1362 reject_low 18 ALIGNMENT 0 Y12-18h12.q1k chr06 831 337 261284 261283 C 495 0.00 1362 reject_low 10 ALIGNMENT 0 Y12-18h12.q1k chr05 831 587 131077 131076 C 245 0.00 1362 reject_low 11 ALIGNMENT 57 Y12-18h12.q1k chr13 581 509 808244 808316 C 73 93.15 1362 reject_low 12 ALIGNMENT 0 Y12-18h12.q1k chr03 86 62 169466 169465 C 25 0.00 1362 reject_low 13 ALIGNMENT 0 Y12-18h12.q1k chr12 831 337 656413 656412 C 495 0.00 1362 reject_low 17 ALIGNMENT 22 Y12-18h12.q1k chr12 89 152 365887 365952 F 64 81.25 1362 reject_low 18 ALIGNMENT 42 Y12-18h12.q1k chr13 268 87 504411 504601 C 182 76.92 1362 reject_low 14 ALIGNMENT 0 Y12-18h12.q1k chr13 508 62 808317 808316 C 447 0.00 1362 reject_low 12 ALIGNMENT 45 Y12-18h12.q1k chr07 389 87 735492 735804 C 303 74.92 1362 reject_low 8 ALIGNMENT 94 Y12-18h12.q1k chr07 343 90 327900 328162 C 254 81.10 1362 reject_low 2 ALIGNMENT 65 Y12-18h12.q1k chr06 336 163 261283 261455 C 174 81.61 1362 reject_low 10 ALIGNMENT 1032 Y12-18h12.p1k chr03 19 1218 165014 166230 F 1200 96.25 1403 accept 0 ALIGNMENT 0 Y12-18h12.q1k chr06 162 62 261456 261455 C 101 0.00 1362 reject_low 10 ALIGNMENT 27 Y12-18h12.q1k chr09 151 90 246412 246473 C 62 82.26 1362 reject_low 20 ALIGNMENT 43 Y12-18h12.q1k chr03 159 87 169393 169465 C 73 87.67 1362 reject_low 13 ALIGNMENT 0 Y12-18h12.q1k chr04 508 62 802798 802797 C 447 0.00 1362 reject_low 6 ALIGNMENT 0 Y12-18h12.q1k chr03 62 86 168669 168668 F 25 0.00 1362 reject_low 16 ALIGNMENT 0 Y12-18h12.q1k chr09 831 337 246218 246217 C 495 0.00 1362 reject_low 20 ALIGNMENT 0 Y12-18h12.q1k chr07 831 390 735493 735492 C 442 0.00 1362 reject_low 8 ALIGNMENT 0 Y12-18h12.q1k chr12 497 62 448734 448733 C 436 0.00 1362 reject_low 1 ALIGNMENT 0 Y12-18h12.q1k chr05 586 831 250361 250360 F 246 0.00 1362 reject_low 4 ALIGNMENT 0 Y12-18h12.q1k chr07 89 62 328163 328162 C 28 0.00 1362 reject_low 2 ALIGNMENT 0 Y12-18h12.q1k chr12 831 587 448646 448645 C 245 0.00 1362 reject_low 1 ALIGNMENT 72 Y12-18h12.q1k chr04 585 509 645143 645219 C 77 98.70 1362 reject_low 5 ALIGNMENT 71 Y12-18h12.q1k chr04 509 583 520968 521042 F 75 98.67 1362 reject_low 7 ALIGNMENT 0 Y12-18h12.q1k chr04 831 587 802721 802720 C 245 0.00 1362 reject_low 6 ALIGNMENT 0 Y12-18h12.q1k chr13 86 62 504602 504601 C 25 0.00 1362 reject_low 14 ALIGNMENT 541 Y12-18h12.q1k chr03 1179 492 167672 168384 C 688 94.62 1362|0,3 accept 0 ALIGNMENT 0 Y12-18h12.q1k chr07 831 344 327901 327900 C 488 0.00 1362 reject_low 2 ALIGNMENT 0 Y12-18h12.q1k chr12 86 62 656672 656671 C 25 0.00 1362 reject_low 17 ALIGNMENT 0 Y12-18h12.q1k chr08 62 501 134307 134306 F 440 0.00 1362 reject_low 3 ALIGNMENT 0 Y12-18h12.q1k chr05 62 506 250283 250282 F 445 0.00 1362 reject_low 4 ALIGNMENT 0 Y12-18h12.q1k chr16 178 152 62547 62583 C 27 0.00 1362 reject_low 19 ALIGNMENT 76 Y12-18h12.q1k chr12 586 498 448645 448733 C 89 95.51 1362 reject_low 1 ALIGNMENT 0 Y12-18h12.q1k chr13 831 582 808245 808244 C 250 0.00 1362 reject_low 12 ALIGNMENT 0 Y12-18h12.q1k chr08 588 831 134392 134391 F 244 0.00 1362 reject_low 3 ALIGNMENT 75 Y12-18h12.q1k chr08 502 587 134307 134392 F 86 96.51 1362 reject_low 3 ALIGNMENT 0 Y12-18h12.q1k chr13 831 269 504412 504411 C 563 0.00 1362 reject_low 14 ALIGNMENT 945 Y12-18h13.q1k chr14 1127 38 739330 740434 C 1090 96.61 1337 accept 0 ALIGNMENT 1016 Y12-18h14.q1k chr02 43 1198 457160 458330 F 1156 97.15 1383 accept 0 ALIGNMENT 703 Y12-18h15.p1k chr07 18 845 615908 616728 F 828 96.38 1467 accept 0 ALIGNMENT 970 Y12-18h15.q1k chr07 1180 39 619022 620179 C 1142 96.06 1375 accept 0 ALIGNMENT 1012 Y12-18h16.q1k chr05 38 1262 227909 229148 F 1225 95.51 1384 accept 0 ALIGNMENT 1013 Y12-18h16.p1k chr05 1197 21 232571 233763 C 1177 96.26 1366 accept 0 ALIGNMENT 949 Y12-18h17.q1k chr15 38 1214 967034 968228 F 1177 94.99 1344 accept 0 ALIGNMENT 413 Y12-18h17.p1k chr15 520 30 969791 970281 C 491 95.72 1344 accept 0 ALIGNMENT 0 Y12-18h17.p1k chr15 843 521 969792 969791 C 323 0.00 1344 accept 0 ALIGNMENT 933 Y12-18h18.q1k chr08 39 1131 105532 106638 F 1093 96.16 1285 accept 0 ALIGNMENT 1079 Y12-18h18.p1k chr08 1293 18 110007 111299 C 1276 96.00 1394 accept 0 ALIGNMENT 305 Y12-18h19.q1k chr05 30 471 7108 7553 F 442 90.72 1308 reject_low 2 ALIGNMENT 0 Y12-18h19.q1k chr05 472 873 7553 7552 F 402 0.00 1308 reject_low 2 ALIGNMENT 898 Y12-18h19.p1k chr10 31 1071 737319 738371 F 1041 96.83 1287 ambiguous_tel 0 ALIGNMENT 952 Y12-18h19.q1k chr04 30 1193 3452 4627 F 1164 95.45 1308 ambiguous_tel 1 ALIGNMENT 949 Y12-18h19.q1k chr10 1193 30 741089 742264 C 1164 95.36 1308 ambiguous_tel 0 ALIGNMENT 893 Y12-18h19.p1k chr04 1071 31 7345 8396 C 1041 96.73 1287 ambiguous_tel 1 ALIGNMENT 1019 Y12-18h20.q1k chr02 38 1188 418606 419773 F 1151 97.57 1315 accept 0 ALIGNMENT 1031 Y12-18h20.p1k chr02 1239 24 421410 422642 C 1216 96.38 1365 accept 0 ALIGNMENT 990 Y12-18h21.q1k chr04 40 1183 1118543 1119691 F 1144 96.59 1284 accept 0 ALIGNMENT 920 Y12-18h21.p1k chr04 1093 24 1123190 1124276 C 1070 96.45 1290 accept 0 ALIGNMENT 1017 Y12-18h23.p1k chr14 17 1218 291481 292690 F 1202 95.84 1331 accept 0 ALIGNMENT 1063 Y12-18h23.q1k chr14 1250 38 294379 295596 C 1213 96.70 1252 accept 0 ALIGNMENT 0 Y12-18h24.q1k chr08 62 95 291841 291840 F 34 0.00 1263 reject_low 2 ALIGNMENT 922 Y12-18h24.p1k chr12 20 1090 285215 286277 F 1071 96.73 1336 accept 0 ALIGNMENT 0 Y12-18h24.q1k chr15 196 62 25947 25946 C 135 0.00 1263 reject_low 4 ALIGNMENT 60 Y12-18h24.q1k chr15 669 197 25474 25946 C 473 72.52 1263 reject_low 4 ALIGNMENT 0 Y12-18h24.q1k chr13 173 62 288761 288760 C 112 0.00 1263 reject_low 3 ALIGNMENT 133 Y12-18h24.q1k chr08 96 556 291841 292301 F 461 77.87 1263 reject_low 2 ALIGNMENT 0 Y12-18h24.q1k chr13 814 572 288364 288363 C 243 0.00 1263 reject_low 3 ALIGNMENT 0 Y12-18h24.q1k chr08 671 814 288583 288582 F 144 0.00 1263 reject_low 1 ALIGNMENT 96 Y12-18h24.q1k chr13 571 174 288363 288760 C 398 75.88 1263 reject_low 3 ALIGNMENT 217 Y12-18h24.q1k chr08 53 670 287966 288583 F 618 79.61 1263 reject_low 1 ALIGNMENT 0 Y12-18h24.q1k chr15 814 670 25475 25474 C 145 0.00 1263 reject_low 4 ALIGNMENT 0 Y12-18h24.q1k chr08 557 814 292301 292300 F 258 0.00 1263 reject_low 2 ALIGNMENT 964 Y12-18h24.q1k chr12 1194 35 289931 291079 C 1160 95.69 1263 accept 0 ALIGNMENT 1005 Y12-18i03.p1k chr14 1202 20 205845 207021 C 1183 96.53 1444 accept 0 ALIGNMENT 917 Y12-18i03.q1k chr14 3 1104 203052 204160 F 1102 95.46 1260 accept 0 ALIGNMENT 982 Y12-18i04.q1k chr15 33 1216 811284 812482 F 1184 95.95 1363 accept 0 ALIGNMENT 1016 Y12-18i04.p1k chr15 1243 20 814327 815565 C 1224 95.51 1393 accept 0 ALIGNMENT 632 Y12-18i05.q1k chr07 866 42 473804 474621 C 825 93.58 1387 accept 0 ALIGNMENT 685 Y12-18i05.p1k chr07 165 1085 469537 470442 F 921 93.70 1483 accept 0 ALIGNMENT 995 Y12-18i06.p1k chr12 1179 25 313797 314946 C 1155 96.71 1424 accept 0 ALIGNMENT 941 Y12-18i06.q1k chr12 27 1214 310856 312052 F 1188 94.53 1400 accept 0 ALIGNMENT 1038 Y12-18i07.p1k chr11 1300 24 13554 14838 C 1277 95.07 1432 accept 0 ALIGNMENT 996 Y12-18i07.q1k chr11 35 1216 9591 10789 F 1182 95.85 1341 accept 0 ALIGNMENT 342 Y12-18i07.q1k chr15 916 35 1056295 1057177 C 882 80.50 1341 reject_low 1 ALIGNMENT 0 Y12-18i08.p1k chr03 694 62 151516 151515 C 633 0.00 1419 reject_low 28 ALIGNMENT 104 Y12-18i08.p1k chr13 747 555 357025 357220 C 193 87.56 1419 reject_low 12 ALIGNMENT 0 Y12-18i08.p1k chr16 748 872 850315 850314 F 125 0.00 1419 reject_low 18 ALIGNMENT 88 Y12-18i08.p1k chr16 555 747 844523 844724 F 193 84.97 1419 reject_low 17 ALIGNMENT 96 Y12-18i08.p1k chr15 759 448 227859 228177 C 312 79.81 1419 reject_low 5 ALIGNMENT 0 Y12-18i08.p1k chr14 764 872 519492 519491 F 109 0.00 1419 reject_low 23 ALIGNMENT 0 Y12-18i08.p1k chr16 62 119 435882 435881 F 58 0.00 1419 reject_low 1 ALIGNMENT 0 Y12-18i08.p1k chr11 872 748 313269 313268 C 125 0.00 1419 reject_low 21 ALIGNMENT 77 Y12-18i08.p1k chr02 120 202 642995 643076 F 83 98.80 1419 reject_low 2 ALIGNMENT 923 Y12-18i08.p1k chr16 19 1195 775651 776844 F 1177 94.73 1419 accept 0 ALIGNMENT 0 Y12-18i08.p1k chr14 872 764 96616 96615 C 109 0.00 1419 reject_low 6 ALIGNMENT 0 Y12-18i08.p1k chr16 764 872 560804 560803 F 109 0.00 1419 reject_low 11 ALIGNMENT 97 Y12-18i08.p1k chr03 444 748 149475 149787 F 305 80.98 1419 reject_low 4 ALIGNMENT 0 Y12-18i08.p1k chr03 62 443 149475 149474 F 382 0.00 1419 reject_low 4 ALIGNMENT 81 Y12-18i08.p1k chr16 604 754 804495 804641 F 151 88.74 1419 reject_low 20 ALIGNMENT 85 Y12-18i08.p1k chr13 535 748 202013 202235 F 214 83.64 1419 reject_low 15 ALIGNMENT 0 Y12-18i08.p1k chr14 554 62 96827 96826 C 493 0.00 1419 reject_low 6 ALIGNMENT 0 Y12-18i08.p1k chr16 634 62 804776 804775 C 573 0.00 1419 reject_low 26 ALIGNMENT 0 Y12-18i08.p1k chr03 872 764 124137 124136 C 109 0.00 1419 reject_low 14 ALIGNMENT 44 Y12-18i08.p1k chr16 763 535 810230 810464 C 229 77.29 1419 reject_low 25 ALIGNMENT 0 Y12-18i08.p1k chr16 554 62 850848 850847 C 493 0.00 1419 reject_low 16 ALIGNMENT 88 Y12-18i08.p1k chr15 746 555 113315 113509 C 192 84.90 1419 reject_low 19 ALIGNMENT 0 Y12-18i08.p1k chr16 755 872 804641 804640 F 118 0.00 1419 reject_low 20 ALIGNMENT 0 Y12-18i08.p1k chr14 62 534 524824 524823 F 473 0.00 1419 reject_low 24 ALIGNMENT 0 Y12-18i08.p1k chr16 872 764 804647 804646 C 109 0.00 1419 reject_low 26 ALIGNMENT 0 Y12-18i08.p1k chr14 872 764 102198 102197 C 109 0.00 1419 reject_low 7 ALIGNMENT 0 Y12-18i08.p1k chr09 554 62 197372 197371 C 493 0.00 1419 reject_low 29 ALIGNMENT 88 Y12-18i08.p1k chr16 763 555 850630 850847 C 209 83.73 1419 reject_low 16 ALIGNMENT 0 Y12-18i08.p1k chr13 748 872 184480 184479 F 125 0.00 1419 reject_low 9 ALIGNMENT 0 Y12-18i08.p1k chr15 872 747 113316 113315 C 126 0.00 1419 reject_low 19 ALIGNMENT 0 Y12-18i08.p1k chr16 872 764 850631 850630 C 109 0.00 1419 reject_low 16 ALIGNMENT 0 Y12-18i08.p1k chr03 622 872 151700 151699 F 251 0.00 1419 reject_low 27 ALIGNMENT 0 Y12-18i08.p1k chr13 749 872 202235 202234 F 124 0.00 1419 reject_low 15 ALIGNMENT 47 Y12-18i08.p1k chr14 535 763 519258 519492 F 229 76.86 1419 reject_low 23 ALIGNMENT 0 Y12-18i08.p1k chr14 62 534 519258 519257 F 473 0.00 1419 reject_low 23 ALIGNMENT 0 Y12-18i08.p1k chr16 534 62 810465 810464 C 473 0.00 1419 reject_low 25 ALIGNMENT 0 Y12-18i08.p1k chr16 62 554 560593 560592 F 493 0.00 1419 reject_low 11 ALIGNMENT 0 Y12-18i08.p1k chr02 62 119 642995 642994 F 58 0.00 1419 reject_low 2 ALIGNMENT 88 Y12-18i08.p1k chr16 555 747 850114 850315 F 193 84.97 1419 reject_low 18 ALIGNMENT 66 Y12-18i08.p1k chr03 711 555 142803 142962 C 157 84.08 1419 reject_low 22 ALIGNMENT 0 Y12-18i08.p1k chr11 534 62 313485 313484 C 473 0.00 1419 reject_low 21 ALIGNMENT 0 Y12-18i08.p1k chr16 872 764 810231 810230 C 109 0.00 1419 reject_low 25 ALIGNMENT 0 Y12-18i08.p1k chr03 554 62 142963 142962 C 493 0.00 1419 reject_low 22 ALIGNMENT 0 Y12-18i08.p1k chr13 554 62 362803 362802 C 493 0.00 1419 reject_low 13 ALIGNMENT 0 Y12-18i08.p1k chr14 554 62 102409 102408 C 493 0.00 1419 reject_low 7 ALIGNMENT 0 Y12-18i08.p1k chr16 205 872 435966 435965 F 668 0.00 1419 reject_low 1 ALIGNMENT 0 Y12-18i08.p1k chr03 872 735 151477 151476 C 138 0.00 1419 reject_low 28 ALIGNMENT 0 Y12-18i08.p1k chr15 62 554 594936 594935 F 493 0.00 1419 reject_low 10 ALIGNMENT 0 Y12-18i08.p1k chr15 748 872 595131 595130 F 125 0.00 1419 reject_low 10 ALIGNMENT 0 Y12-18i08.p1k chr13 872 748 362608 362607 C 125 0.00 1419 reject_low 13 ALIGNMENT 107 Y12-18i08.p1k chr14 763 555 102197 102408 C 209 86.60 1419 reject_low 7 ALIGNMENT 28 Y12-18i08.p1k chr03 734 695 151476 151515 C 40 92.50 1419 reject_low 28 ALIGNMENT 0 Y12-18i08.p1k chr13 872 748 357026 357025 C 125 0.00 1419 reject_low 12 ALIGNMENT 0 Y12-18i08.p1k chr02 203 872 643076 643075 F 670 0.00 1419 reject_low 2 ALIGNMENT 104 Y12-18i08.p1k chr13 747 555 362607 362802 C 193 87.56 1419 reject_low 13 ALIGNMENT 46 Y12-18i08.p1k chr16 763 635 804646 804775 C 129 81.40 1419 reject_low 26 ALIGNMENT 0 Y12-18i08.p1k chr03 62 554 151632 151631 F 493 0.00 1419 reject_low 27 ALIGNMENT 0 Y12-18i08.p1k chr09 599 600 197308 197324 C 0 0.00 1419 reject_low 29 ALIGNMENT 101 Y12-18i08.p1k chr16 555 763 560593 560804 F 209 85.65 1419 reject_low 11 ALIGNMENT 0 Y12-18i08.p1k chr09 872 764 197142 197141 C 109 0.00 1419 reject_low 29 ALIGNMENT 0 Y12-18i08.p1k chr16 62 603 804495 804494 F 542 0.00 1419 reject_low 20 ALIGNMENT 84 Y12-18i08.p1k chr16 120 204 435882 435966 F 85 100.00 1419 reject_low 1 ALIGNMENT 0 Y12-18i08.p1k chr16 62 554 850114 850113 F 493 0.00 1419 reject_low 18 ALIGNMENT 64 Y12-18i08.p1k chr11 747 535 313268 313484 C 213 81.22 1419 reject_low 21 ALIGNMENT 47 Y12-18i08.p1k chr14 535 763 524824 525058 F 229 76.86 1419 reject_low 24 ALIGNMENT 92 Y12-18i08.p1k chr03 763 555 124136 124347 C 209 84.21 1419 reject_low 14 ALIGNMENT 0 Y12-18i08.p1k chr03 554 62 124348 124347 C 493 0.00 1419 reject_low 14 ALIGNMENT 0 Y12-18i08.p1k chr15 447 62 228178 228177 C 386 0.00 1419 reject_low 5 ALIGNMENT 93 Y12-18i08.p1k chr05 763 535 443398 443635 C 229 83.84 1419 reject_low 8 ALIGNMENT 0 Y12-18i08.p1k chr07 62 125 707110 707109 F 64 0.00 1419 reject_low 3 ALIGNMENT 27 Y12-18i08.p1k chr09 599 555 197325 197371 C 45 91.11 1419 reject_low 29 ALIGNMENT 0 Y12-18i08.p1k chr05 534 62 443636 443635 C 473 0.00 1419 reject_low 8 ALIGNMENT 0 Y12-18i08.p1k chr03 749 872 149787 149786 F 124 0.00 1419 reject_low 4 ALIGNMENT 910 Y12-18i08.q1k chr16 1122 34 784175 785286 C 1089 96.05 1366 accept 0 ALIGNMENT 0 Y12-18i08.p1k chr13 62 534 202013 202012 F 473 0.00 1419 reject_low 15 ALIGNMENT 73 Y12-18i08.p1k chr09 763 600 197141 197307 C 164 84.76 1419 reject_low 29 ALIGNMENT 0 Y12-18i08.p1k chr15 872 760 227860 227859 C 113 0.00 1419 reject_low 5 ALIGNMENT 0 Y12-18i08.p1k chr07 202 872 707185 707184 F 671 0.00 1419 reject_low 3 ALIGNMENT 107 Y12-18i08.p1k chr15 555 747 594936 595131 F 193 88.08 1419 reject_low 10 ALIGNMENT 0 Y12-18i08.p1k chr05 872 764 443399 443398 C 109 0.00 1419 reject_low 8 ALIGNMENT 76 Y12-18i08.p1k chr07 126 201 707110 707185 F 76 100.00 1419 reject_low 3 ALIGNMENT 32 Y12-18i08.p1k chr03 555 621 151632 151700 F 67 88.06 1419 reject_low 27 ALIGNMENT 0 Y12-18i08.p1k chr15 554 62 113510 113509 C 493 0.00 1419 reject_low 19 ALIGNMENT 0 Y12-18i08.p1k chr16 62 554 844523 844522 F 493 0.00 1419 reject_low 17 ALIGNMENT 0 Y12-18i08.p1k chr13 62 554 184285 184284 F 493 0.00 1419 reject_low 9 ALIGNMENT 107 Y12-18i08.p1k chr13 555 747 184285 184480 F 193 88.08 1419 reject_low 9 ALIGNMENT 0 Y12-18i08.p1k chr13 554 62 357221 357220 C 493 0.00 1419 reject_low 12 ALIGNMENT 107 Y12-18i08.p1k chr14 763 555 96615 96826 C 209 86.60 1419 reject_low 6 ALIGNMENT 0 Y12-18i08.p1k chr16 748 872 844724 844723 F 125 0.00 1419 reject_low 17 ALIGNMENT 0 Y12-18i08.p1k chr14 764 872 525058 525057 F 109 0.00 1419 reject_low 24 ALIGNMENT 0 Y12-18i08.p1k chr03 872 712 142804 142803 C 161 0.00 1419 reject_low 22 ALIGNMENT 881 Y12-18i09.q1k chr16 34 1034 334732 335744 F 1001 97.10 1260 accept 0 ALIGNMENT 997 Y12-18i09.p1k chr16 1189 25 337576 338751 C 1165 95.97 1391 accept 0 ALIGNMENT 21 Y12-18i11.p1k chr05 560 588 132559 132587 F 29 96.55 1417 reject_low 1 ALIGNMENT 20 Y12-18i11.p1k chr04 589 558 226842 226873 C 32 93.75 1417 reject_low 2 ALIGNMENT 924 Y12-18i11.q1k chr16 1250 30 635362 636600 C 1221 93.20 1319 accept 0 ALIGNMENT 0 Y12-18i11.p1k chr05 77 559 132559 132558 F 483 0.00 1417 reject_low 1 ALIGNMENT 656 Y12-18i11.p1k chr16 18 987 630733 631671 F 970 91.55 1417 accept 0 ALIGNMENT 0 Y12-18i11.p1k chr04 557 77 226874 226873 C 481 0.00 1417 reject_low 2 ALIGNMENT 0 Y12-18i12.p1k chr08 295 62 479132 479131 C 234 0.00 1362 reject_low 2 ALIGNMENT 24 Y12-18i12.p1k chr02 302 340 780391 780429 F 39 94.87 1362 reject_low 5 ALIGNMENT 28 Y12-18i12.p1k chr02 311 347 455751 455787 F 37 97.30 1362 reject_low 1 ALIGNMENT 1029 Y12-18i12.q1k chr08 37 1177 163297 164448 F 1141 97.46 1379 accept 0 ALIGNMENT 0 Y12-18i12.p1k chr04 344 854 747553 747552 F 511 0.00 1362 reject_low 4 ALIGNMENT 0 Y12-18i12.p1k chr02 62 310 455751 455750 F 249 0.00 1362 reject_low 1 ALIGNMENT 0 Y12-18i12.p1k chr04 302 62 1346569 1346568 C 241 0.00 1362 reject_low 7 ALIGNMENT 0 Y12-18i12.p1k chr08 854 329 479100 479099 C 526 0.00 1362 reject_low 2 ALIGNMENT 0 Y12-18i12.p1k chr09 346 854 400485 400484 F 509 0.00 1362 reject_low 10 ALIGNMENT 0 Y12-18i12.p1k chr02 62 301 780391 780390 F 240 0.00 1362 reject_low 5 ALIGNMENT 900 Y12-18i12.p1k chr08 1094 25 168395 169491 C 1070 96.07 1362 accept 0 ALIGNMENT 20 Y12-18i12.p1k chr08 328 296 479099 479131 C 33 90.91 1362 reject_low 2 ALIGNMENT 20 Y12-18i12.p1k chr09 312 345 400452 400485 F 34 94.12 1362 reject_low 10 ALIGNMENT 0 Y12-18i12.p1k chr08 309 62 66601 66600 C 248 0.00 1362 reject_low 8 ALIGNMENT 0 Y12-18i12.p1k chr04 854 346 1346527 1346526 C 509 0.00 1362 reject_low 7 ALIGNMENT 0 Y12-18i12.p1k chr09 62 311 400452 400451 F 250 0.00 1362 reject_low 10 ALIGNMENT 23 Y12-18i12.p1k chr12 303 340 511524 511561 F 38 94.74 1362 reject_low 6 ALIGNMENT 25 Y12-18i12.p1k chr04 303 343 747513 747553 F 41 95.12 1362 reject_low 4 ALIGNMENT 0 Y12-18i12.p1k chr02 341 854 780429 780428 F 514 0.00 1362 reject_low 5 ALIGNMENT 0 Y12-18i12.p1k chr02 348 854 455787 455786 F 507 0.00 1362 reject_low 1 ALIGNMENT 21 Y12-18i12.p1k chr04 345 303 1346526 1346568 C 43 90.70 1362 reject_low 7 ALIGNMENT 0 Y12-18i12.p1k chr12 62 302 511524 511523 F 241 0.00 1362 reject_low 6 ALIGNMENT 0 Y12-18i12.p1k chr08 854 346 66566 66565 C 509 0.00 1362 reject_low 8 ALIGNMENT 0 Y12-18i12.p1k chr08 854 342 372874 372873 C 513 0.00 1362 reject_low 3 ALIGNMENT 0 Y12-18i12.p1k chr16 62 305 908162 908161 F 244 0.00 1362 reject_low 11 ALIGNMENT 0 Y12-18i12.p1k chr16 336 854 908191 908190 F 519 0.00 1362 reject_low 11 ALIGNMENT 21 Y12-18i12.p1k chr07 345 315 448891 448921 C 31 96.77 1362 reject_low 9 ALIGNMENT 0 Y12-18i12.p1k chr12 341 854 511561 511560 F 514 0.00 1362 reject_low 6 ALIGNMENT 20 Y12-18i12.p1k chr16 306 335 908162 908191 F 30 96.67 1362 reject_low 11 ALIGNMENT 22 Y12-18i12.p1k chr08 345 310 66565 66600 C 36 94.44 1362 reject_low 8 ALIGNMENT 0 Y12-18i12.p1k chr08 295 62 372920 372919 C 234 0.00 1362 reject_low 3 ALIGNMENT 0 Y12-18i12.p1k chr07 314 62 448922 448921 C 253 0.00 1362 reject_low 9 ALIGNMENT 20 Y12-18i12.p1k chr08 341 296 372873 372919 C 46 86.96 1362 reject_low 3 ALIGNMENT 0 Y12-18i12.p1k chr07 854 346 448892 448891 C 509 0.00 1362 reject_low 9 ALIGNMENT 0 Y12-18i12.p1k chr04 62 302 747513 747512 F 241 0.00 1362 reject_low 4 ALIGNMENT 961 Y12-18i15.p1k chr16 1199 20 685882 687068 C 1180 95.51 1391 accept 0 ALIGNMENT 973 Y12-18i15.q1k chr16 33 1200 681958 683139 F 1168 95.55 1282 accept 0 ALIGNMENT 0 Y12-18i16.p1k chr13 787 156 357005 357004 C 632 0.00 1353 reject_low 6 ALIGNMENT 105 Y12-18i16.p1k chr07 21 155 402159 402293 F 135 94.81 1353 reject_low 17 ALIGNMENT 0 Y12-18i16.p1k chr11 787 156 517096 517095 C 632 0.00 1353 reject_low 5 ALIGNMENT 0 Y12-18i16.p1k chr01 787 157 165827 165826 C 631 0.00 1353 reject_low 8 ALIGNMENT 113 Y12-18i16.p1k chr05 156 21 448979 449114 C 136 97.06 1353 reject_low 9 ALIGNMENT 104 Y12-18i16.p1k chr05 155 21 443393 443527 C 135 94.81 1353 reject_low 18 ALIGNMENT 115 Y12-18i16.p1k chr16 159 21 850621 850759 C 139 97.12 1353 reject_low 2 ALIGNMENT 113 Y12-18i16.p1k chr01 156 21 165826 165961 C 136 97.06 1353 reject_low 8 ALIGNMENT 97 Y12-18i16.p1k chr07 21 155 876149 876284 F 135 93.33 1353 reject_low 19 ALIGNMENT 106 Y12-18i16.p1k chr02 21 156 221237 221374 F 136 95.59 1353 reject_low 16 ALIGNMENT 0 Y12-18i16.p1k chr12 787 156 475976 475975 C 632 0.00 1353 reject_low 13 ALIGNMENT 113 Y12-18i16.p1k chr14 155 21 96610 96744 C 135 97.04 1353 reject_low 14 ALIGNMENT 0 Y12-18i16.p1k chr07 156 787 535546 535545 F 632 0.00 1353 reject_low 7 ALIGNMENT 95 Y12-18i16.p1k chr14 21 156 519363 519498 F 136 92.65 1353 reject_low 23 ALIGNMENT 86 Y12-18i16.p1k chr03 155 33 83054 83176 C 123 92.68 1353 reject_low 25 ALIGNMENT 97 Y12-18i16.p1k chr13 135 21 378304 378418 C 115 97.39 1353 reject_low 22 ALIGNMENT 119 Y12-18i16.p1k chr11 155 21 517095 517229 C 135 98.52 1353 reject_low 5 ALIGNMENT 97 Y12-18i16.p1k chr13 135 21 372716 372830 C 115 97.39 1353 reject_low 21 ALIGNMENT 0 Y12-18i16.p1k chr14 157 787 519498 519497 F 631 0.00 1353 reject_low 23 ALIGNMENT 0 Y12-18i16.p1k chr05 787 157 448980 448979 C 631 0.00 1353 reject_low 9 ALIGNMENT 0 Y12-18i16.p1k chr05 787 156 443394 443393 C 632 0.00 1353 reject_low 18 ALIGNMENT 0 Y12-18i16.p1k chr13 787 136 372717 372716 C 652 0.00 1353 reject_low 21 ALIGNMENT 804 Y12-18i16.p1k chr07 152 1113 661549 662524 F 962 96.05 1353 accept 0 ALIGNMENT 97 Y12-18i16.p1k chr12 135 21 215101 215215 C 115 97.39 1353 reject_low 20 ALIGNMENT 1007 Y12-18i16.q1k chr07 1262 37 664422 665663 C 1226 95.27 1357 accept 0 ALIGNMENT 0 Y12-18i16.p1k chr07 164 787 932030 932029 F 624 0.00 1353 reject_low 1 ALIGNMENT 0 Y12-18i16.p1k chr13 787 136 378305 378304 C 652 0.00 1353 reject_low 22 ALIGNMENT 0 Y12-18i16.p1k chr13 787 157 362586 362585 C 631 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-18i16.p1k chr14 787 156 96611 96610 C 632 0.00 1353 reject_low 14 ALIGNMENT 113 Y12-18i16.p1k chr01 155 21 160239 160373 C 135 97.04 1353 reject_low 11 ALIGNMENT 119 Y12-18i16.p1k chr13 156 21 362585 362720 C 136 98.53 1353 reject_low 3 ALIGNMENT 0 Y12-18i16.p1k chr12 787 136 215102 215101 C 652 0.00 1353 reject_low 20 ALIGNMENT 0 Y12-18i16.p1k chr16 787 160 850622 850621 C 628 0.00 1353 reject_low 2 ALIGNMENT 0 Y12-18i16.p1k chr02 156 787 226955 226954 F 632 0.00 1353 reject_low 4 ALIGNMENT 116 Y12-18i16.p1k chr07 21 155 535412 535546 F 135 97.78 1353 reject_low 7 ALIGNMENT 0 Y12-18i16.p1k chr02 157 787 221374 221373 F 631 0.00 1353 reject_low 16 ALIGNMENT 0 Y12-18i16.p1k chr16 157 787 56789 56788 F 631 0.00 1353 reject_low 10 ALIGNMENT 113 Y12-18i16.p1k chr03 21 155 82901 83035 F 135 97.04 1353 reject_low 12 ALIGNMENT 0 Y12-18i16.p1k chr03 156 787 83035 83034 F 632 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-18i16.p1k chr03 787 156 83055 83054 C 632 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-18i16.p1k chr07 156 787 876284 876283 F 632 0.00 1353 reject_low 19 ALIGNMENT 113 Y12-18i16.p1k chr16 21 156 56654 56789 F 136 97.06 1353 reject_low 10 ALIGNMENT 108 Y12-18i16.p1k chr07 21 163 931888 932030 F 143 94.41 1353 reject_low 1 ALIGNMENT 113 Y12-18i16.p1k chr12 155 21 475975 476109 C 135 97.04 1353 reject_low 13 ALIGNMENT 0 Y12-18i16.p1k chr14 156 787 525063 525062 F 632 0.00 1353 reject_low 24 ALIGNMENT 119 Y12-18i16.p1k chr02 21 155 226821 226955 F 135 98.52 1353 reject_low 4 ALIGNMENT 107 Y12-18i16.p1k chr10 21 156 472580 472715 F 136 95.59 1353 reject_low 15 ALIGNMENT 95 Y12-18i16.p1k chr14 21 155 524929 525063 F 135 92.59 1353 reject_low 24 ALIGNMENT 0 Y12-18i16.p1k chr07 62 151 661549 661548 F 90 0.00 1353 accept 0 ALIGNMENT 0 Y12-18i16.p1k chr10 157 787 472715 472714 F 631 0.00 1353 reject_low 15 ALIGNMENT 119 Y12-18i16.p1k chr13 155 21 357004 357138 C 135 98.52 1353 reject_low 6 ALIGNMENT 0 Y12-18i16.p1k chr01 787 156 160240 160239 C 632 0.00 1353 reject_low 11 ALIGNMENT 0 Y12-18i16.p1k chr07 156 787 402293 402292 F 632 0.00 1353 reject_low 17 ALIGNMENT 904 Y12-18i17.p1k chr08 1083 20 554908 555983 C 1064 95.96 1331 accept 0 ALIGNMENT 88 Y12-18i17.q1k chr08 286 699 550424 550851 F 414 75.85 1276 accept 0 ALIGNMENT 473 Y12-18i17.p1k chr13 53 895 162210 163052 F 843 85.77 1331 reject_low 3 ALIGNMENT 635 Y12-18i17.p1k chr12 1058 38 1003095 1004122 C 1021 88.25 1331 reject_low 2 ALIGNMENT 0 Y12-18i17.q1k chr08 62 285 550424 550423 F 224 0.00 1276 accept 0 ALIGNMENT 0 Y12-18i17.q1k chr08 700 790 550851 550850 F 91 0.00 1276 accept 0 ALIGNMENT 792 Y12-18i17.p1k chr01 1083 28 228245 229316 C 1056 92.71 1331 reject_low 1 ALIGNMENT 1037 Y12-18i19.p1k chr13 1191 19 775357 776537 C 1173 96.16 1385 accept 0 ALIGNMENT 974 Y12-18i19.q1k chr13 38 1204 770360 771546 F 1167 95.54 1238 accept 0 ALIGNMENT 0 Y12-18i20.p1k chr05 514 825 307193 307192 F 312 0.00 1389 reject_low 1 ALIGNMENT 1039 Y12-18i20.q1k chr09 38 1282 227396 228642 F 1245 95.58 1326 accept 0 ALIGNMENT 372 Y12-18i20.p1k chr05 98 513 306777 307193 F 416 96.88 1389 reject_low 1 ALIGNMENT 0 Y12-18i20.p1k chr05 62 97 306777 306776 F 36 0.00 1389 reject_low 1 ALIGNMENT 1042 Y12-18i20.p1k chr09 1322 16 230727 232047 C 1307 94.80 1389 accept 0 ALIGNMENT 956 Y12-18i22.q1k chr04 39 1114 1091394 1092477 F 1076 97.30 1264 accept 0 ALIGNMENT 1014 Y12-18i22.p1k chr04 1237 20 1093587 1094827 C 1218 96.22 1316 accept 0 ALIGNMENT 1039 Y12-18i23.p1k chr05 1241 26 203404 204620 C 1216 94.98 1338 accept 0 ALIGNMENT 1034 Y12-18i23.q1k chr05 36 1190 199729 200882 F 1155 97.92 1202 accept 0 ALIGNMENT 387 Y12-18i24.q1k chr04 263 989 1091622 1092346 F 727 85.56 1324 accept 0 ALIGNMENT 997 Y12-18j01.p1k chr14 20 1125 202712 203832 F 1106 97.02 1319 accept 0 ALIGNMENT 1056 Y12-18j01.q1k chr14 1258 37 205604 206823 C 1222 96.24 1469 accept 0 ALIGNMENT 999 Y12-18j02.q1k chr04 1177 34 337984 339140 C 1144 97.29 1343 accept 0 ALIGNMENT 441 Y12-18j04.q1k chr04 11 739 1387221 1387934 F 729 88.61 1231 accept 0 ALIGNMENT 985 Y12-18j05.q1k chr04 32 1256 604754 605989 F 1225 95.43 1401 accept 0 ALIGNMENT 1030 Y12-18j07.q1k chr16 1249 34 357403 358626 C 1216 96.22 1392 accept 0 ALIGNMENT 0 Y12-18j08.q1k chr12 62 1141 875365 875364 F 1080 0.00 1386 reject_low 1 ALIGNMENT 936 Y12-18j08.q1k chr16 1131 34 769668 770776 C 1098 96.90 1386 accept 0 ALIGNMENT 31 Y12-18j08.q1k chr12 1142 1243 875365 875481 F 102 82.35 1386 reject_low 1 ALIGNMENT 0 Y12-18j09.q1k chr12 850 909 200964 200963 F 60 0.00 1354 reject_low 1 ALIGNMENT 224 Y12-18j09.q1k chr12 87 849 200202 200964 F 763 76.80 1354 reject_low 1 ALIGNMENT 0 Y12-18j09.q1k chr12 62 86 200202 200201 F 25 0.00 1354 reject_low 1 ALIGNMENT 1008 Y12-18j09.q1k chr13 37 1152 508114 509236 F 1116 97.49 1354 accept 0 ALIGNMENT 0 Y12-18j10.q1k chr05 917 475 306778 306777 C 443 0.00 1424 reject_low 1 ALIGNMENT 368 Y12-18j10.q1k chr05 474 58 306777 307193 C 417 96.64 1424 reject_low 1 ALIGNMENT 1003 Y12-18j10.q1k chr09 37 1299 231528 232803 F 1263 94.06 1424 accept 0 ALIGNMENT 960 Y12-18j11.q1k chr16 1163 37 334130 335266 C 1127 96.10 1384 accept 0 ALIGNMENT 949 Y12-18j12.q1k chr16 36 1205 378156 379333 F 1170 95.30 1375 accept 0 ALIGNMENT 975 Y12-18j13.q1k chr02 1172 38 208974 210122 C 1135 96.04 1313 accept 0 ALIGNMENT 1032 Y12-18j14.q1k chr02 1214 27 676247 677451 C 1188 96.72 1339 accept 0 ALIGNMENT 0 Y12-18j15.q1k chr08 644 921 216808 216807 F 278 0.00 1298 accept 0 ALIGNMENT 47 Y12-18j15.q1k chr08 37 87 214205 214255 F 51 98.04 1298 reject_low 2 ALIGNMENT 331 Y12-18j15.q1k chr08 644 1121 212158 212654 F 478 92.26 1298 reject_low 1 ALIGNMENT 0 Y12-18j15.q1k chr08 88 745 214256 214264 F 658 0.00 1298 reject_low 2 ALIGNMENT 0 Y12-18j15.q1k chr08 62 643 212158 212157 F 582 0.00 1298 reject_low 1 ALIGNMENT 564 Y12-18j15.q1k chr08 37 643 216203 216808 F 607 99.01 1298 accept 0 ALIGNMENT 257 Y12-18j15.q1k chr08 746 1121 214265 214652 F 376 92.02 1298 reject_low 2 ALIGNMENT 638 Y12-18j16.p1k chr07 864 17 818591 819434 C 848 93.87 1626 ambiguous_trans 13 ALIGNMENT 622 Y12-18j16.p1k chr16 17 719 60334 61035 F 703 97.87 1626 ambiguous_trans 21 ALIGNMENT 622 Y12-18j16.p1k chr13 17 719 200214 200915 F 703 97.87 1626 ambiguous_trans 19 ALIGNMENT 1086 Y12-18j16.q1k chr11 1338 39 84725 86026 C 1300 95.62 1385 accept 0 ALIGNMENT 622 Y12-18j16.p1k chr15 17 719 121585 122286 F 703 97.87 1626 ambiguous_trans 20 ALIGNMENT 617 Y12-18j16.p1k chr05 932 17 493632 494533 C 916 92.14 1626 ambiguous_trans 11 ALIGNMENT 707 Y12-18j16.p1k chr04 926 17 987861 988757 C 910 95.38 1626 ambiguous_trans 6 ALIGNMENT 725 Y12-18j16.p1k chr07 17 932 539647 540548 F 916 95.85 1626 ambiguous_trans 3 ALIGNMENT 659 Y12-18j16.p1k chr02 17 864 263456 264299 F 848 94.69 1626 ambiguous_trans 10 ALIGNMENT 704 Y12-18j16.p1k chr14 932 17 97745 98646 C 916 95.09 1626 ambiguous_trans 5 ALIGNMENT 734 Y12-18j16.p1k chr13 932 17 358139 359040 C 916 96.18 1626 ambiguous_trans 2 ALIGNMENT 584 Y12-18j16.p1k chr16 926 17 851771 852667 C 910 90.99 1626 ambiguous_trans 16 ALIGNMENT 614 Y12-18j16.p1k chr13 932 17 373837 374738 C 916 92.03 1626 ambiguous_trans 12 ALIGNMENT 621 Y12-18j16.p1k chr04 17 734 1099645 1100361 F 718 97.21 1626 ambiguous_trans 22 ALIGNMENT 591 Y12-18j16.p1k chr10 17 918 476260 477151 F 902 91.35 1626 ambiguous_trans 15 ALIGNMENT 621 Y12-18j16.p1k chr16 17 734 848294 849010 F 718 97.21 1626 ambiguous_trans 24 ALIGNMENT 737 Y12-18j16.p1k chr02 17 932 224919 225820 F 916 96.29 1626 ambiguous_trans 1 ALIGNMENT 708 Y12-18j16.p1k chr04 17 918 1210573 1211464 F 902 95.57 1626 ambiguous_trans 7 ALIGNMENT 621 Y12-18j16.p1k chr07 734 17 563169 563885 C 718 97.21 1626 ambiguous_trans 23 ALIGNMENT 585 Y12-18j16.p1k chr16 734 17 805963 806679 C 718 95.54 1626 ambiguous_trans 25 ALIGNMENT 662 Y12-18j16.p1k chr15 17 864 598698 599541 F 848 94.81 1626 ambiguous_trans 9 ALIGNMENT 708 Y12-18j16.p1k chr12 17 918 654707 655598 F 902 95.57 1626 ambiguous_trans 8 ALIGNMENT 622 Y12-18j16.p1k chr05 719 17 444733 445434 C 703 97.87 1626 ambiguous_trans 17 ALIGNMENT 622 Y12-18j16.p1k chr12 719 17 477315 478016 C 703 97.87 1626 ambiguous_trans 18 ALIGNMENT 615 Y12-18j16.p1k chr13 17 918 188047 188938 F 902 92.24 1626 ambiguous_trans 14 ALIGNMENT 722 Y12-18j16.p1k chr10 17 932 481844 482745 F 916 95.74 1626 ambiguous_trans 4 ALIGNMENT 993 Y12-18j17.q1k chr02 1146 38 242997 244121 C 1109 97.57 1321 accept 0 ALIGNMENT 944 Y12-18j18.q1k chr02 1129 38 414481 415586 C 1092 96.34 1312 accept 0 ALIGNMENT 1052 Y12-18j18.p1k chr02 21 1251 410473 411716 F 1231 95.53 1404 accept 0 ALIGNMENT 442 Y12-18j20.p1k chr02 28 802 410489 411262 F 775 86.58 1372 accept 0 ALIGNMENT 1063 Y12-18j21.p1k chr06 25 1307 150510 151790 F 1283 95.40 1373 accept 0 ALIGNMENT 1032 Y12-18j21.q1k chr06 1252 37 153250 154465 C 1216 96.22 1316 accept 0 ALIGNMENT 1091 Y12-18j22.p1k chr12 22 1246 880344 881569 F 1225 97.22 1340 accept 0 ALIGNMENT 940 Y12-18j22.q1k chr12 1192 35 881871 883051 C 1158 94.30 1278 accept 0 ALIGNMENT 0 Y12-18j23.p1k chr13 286 230 22000 21999 C 57 0.00 1404 reject_low 2 ALIGNMENT 20 Y12-18j23.p1k chr13 325 287 21961 21999 C 39 92.31 1404 reject_low 2 ALIGNMENT 1033 Y12-18j23.q1k chr02 36 1227 144312 145501 F 1192 96.56 1244 accept_chi 0 ALIGNMENT 20 Y12-18j23.p1k chr06 325 292 78011 78044 C 34 97.06 1404 reject_low 4 ALIGNMENT 0 Y12-18j23.p1k chr11 230 294 136100 136099 F 65 0.00 1404 reject_low 3 ALIGNMENT 0 Y12-18j23.p1k chr06 291 230 78045 78044 C 62 0.00 1404 reject_low 4 ALIGNMENT 21 Y12-18j23.p1k chr11 295 325 136100 136130 F 31 100.00 1404 reject_low 3 ALIGNMENT 417 Y12-18j23.p1k chr07 639 31 306869 307493 C 609 91.30 1404 accept_chi 1 ALIGNMENT 158 Y12-18j24.q1k chr12 1250 919 490227 490543 C 332 85.54 1256 reject_low 2 ALIGNMENT 1024 Y12-18j24.q1k chr12 1250 36 461396 462596 C 1215 95.72 1256 accept 1 ALIGNMENT 0 Y12-18j24.q1k chr12 918 62 490544 490543 C 857 0.00 1256 reject_low 2 ALIGNMENT 1024 Y12-18j24.q1k chr12 1250 36 452259 453459 C 1215 95.72 1256 accept 0 ALIGNMENT 1009 Y12-18k01.q1k chr13 1213 29 661458 662649 C 1185 95.27 1325 accept 0 ALIGNMENT 977 Y12-18k01.p1k chr13 21 1170 658332 659493 F 1150 96.35 1365 accept 0 ALIGNMENT 953 Y12-18k02.q1k chr08 1167 37 199414 200558 C 1131 95.40 1369 accept 0 ALIGNMENT 269 Y12-18k02.q1k chr11 63 649 156438 157024 F 587 82.79 1369 reject_low 1 ALIGNMENT 915 Y12-18k02.p1k chr08 14 1110 195866 196992 F 1097 95.90 1322 accept 0 ALIGNMENT 0 Y12-18k02.q1k chr11 650 853 157024 157023 F 204 0.00 1369 reject_low 1 ALIGNMENT 0 Y12-18k03.p1k chr03 826 596 124154 124153 C 231 0.00 1433 reject_low 23 ALIGNMENT 0 Y12-18k03.p1k chr10 256 257 538014 538350 C 0 0.00 1433 accept 0 ALIGNMENT 0 Y12-18k03.p1k chr10 439 826 538167 538166 F 388 0.00 1433 reject_low 10 ALIGNMENT 23 Y12-18k03.p1k chr03 584 543 151475 151517 C 42 88.10 1433 reject_low 27 ALIGNMENT 41 Y12-18k03.p1k chr10 322 438 538050 538167 F 117 82.05 1433 reject_low 10 ALIGNMENT 58 Y12-18k03.p1k chr04 595 322 645519 645797 C 274 77.74 1433 reject_low 5 ALIGNMENT 0 Y12-18k03.p1k chr10 62 339 472428 472427 F 278 0.00 1433 reject_low 17 ALIGNMENT 0 Y12-18k03.p1k chr11 826 585 301981 301980 C 242 0.00 1433 reject_low 26 ALIGNMENT 58 Y12-18k03.p1k chr14 322 595 524763 525041 F 274 77.74 1433 reject_low 8 ALIGNMENT 39 Y12-18k03.p1k chr02 595 443 258687 258840 C 153 77.78 1433 reject_low 22 ALIGNMENT 0 Y12-18k03.p1k chr10 596 826 472692 472691 F 231 0.00 1433 reject_low 17 ALIGNMENT 0 Y12-18k03.p1k chr02 62 339 265212 265211 F 278 0.00 1433 reject_low 15 ALIGNMENT 47 Y12-18k03.p1k chr02 340 595 265212 265470 F 256 76.95 1433 reject_low 15 ALIGNMENT 0 Y12-18k03.p1k chr03 584 826 149773 149772 F 243 0.00 1433 reject_low 2 ALIGNMENT 50 Y12-18k03.p1k chr13 595 340 357026 357284 C 256 77.34 1433 reject_low 14 ALIGNMENT 0 Y12-18k03.p1k chr07 596 826 535524 535523 F 231 0.00 1433 reject_low 12 ALIGNMENT 0 Y12-18k03.p1k chr03 339 62 124412 124411 C 278 0.00 1433 reject_low 23 ALIGNMENT 0 Y12-18k03.p1k chr02 62 339 259627 259626 F 278 0.00 1433 reject_low 11 ALIGNMENT 0 Y12-18k03.p1k chr12 62 321 593180 593179 F 260 0.00 1433 reject_low 9 ALIGNMENT 0 Y12-18k03.p1k chr04 62 339 802951 802950 F 278 0.00 1433 reject_low 24 ALIGNMENT 35 Y12-18k03.p1k chr04 340 595 802951 803208 F 256 75.39 1433 reject_low 24 ALIGNMENT 0 Y12-18k03.p1k chr12 596 826 651137 651136 F 231 0.00 1433 reject_low 6 ALIGNMENT 0 Y12-18k03.p1k chr14 62 321 519197 519196 F 260 0.00 1433 reject_low 7 ALIGNMENT 0 Y12-18k03.p1k chr10 62 322 543395 543394 F 261 0.00 1433 reject_low 1 ALIGNMENT 0 Y12-18k03.p1k chr10 596 826 483864 483863 F 231 0.00 1433 reject_low 21 ALIGNMENT 0 Y12-18k03.p1k chr12 339 62 215368 215367 C 278 0.00 1433 reject_low 20 ALIGNMENT 0 Y12-18k03.p1k chr07 62 339 541403 541402 F 278 0.00 1433 reject_low 16 ALIGNMENT 0 Y12-18k03.p1k chr02 442 62 258841 258840 C 381 0.00 1433 reject_low 22 ALIGNMENT 58 Y12-18k03.p1k chr03 595 322 168617 168895 C 274 77.74 1433 reject_low 4 ALIGNMENT 0 Y12-18k03.p1k chr03 542 62 151518 151517 C 481 0.00 1433 reject_low 27 ALIGNMENT 0 Y12-18k03.p1k chr03 62 339 151568 151567 F 278 0.00 1433 reject_low 19 ALIGNMENT 35 Y12-18k03.p1k chr03 595 340 124153 124411 C 256 75.39 1433 reject_low 23 ALIGNMENT 46 Y12-18k03.p1k chr10 340 595 472428 472692 F 256 76.56 1433 reject_low 17 ALIGNMENT 0 Y12-18k03.p1k chr11 826 596 517118 517117 C 231 0.00 1433 reject_low 13 ALIGNMENT 176 Y12-18k03.p1k chr10 323 612 543395 543689 F 290 90.34 1433 reject_low 1 ALIGNMENT 0 Y12-18k03.p1k chr03 826 585 151476 151475 C 242 0.00 1433 reject_low 27 ALIGNMENT 0 Y12-18k03.p1k chr14 596 826 525041 525040 F 231 0.00 1433 reject_low 8 ALIGNMENT 58 Y12-18k03.p1k chr01 595 322 160261 160542 C 274 77.74 1433 reject_low 3 ALIGNMENT 44 Y12-18k03.p1k chr03 340 595 151568 151826 F 256 76.56 1433 reject_low 19 ALIGNMENT 689 Y12-18k03.p1k chr10 1256 254 537030 538016 C 1003 91.92 1433|0,3 accept 0 ALIGNMENT 58 Y12-18k03.p1k chr12 322 595 650859 651137 F 274 77.74 1433 reject_low 6 ALIGNMENT 0 Y12-18k03.p1k chr13 826 596 357027 357026 C 231 0.00 1433 reject_low 14 ALIGNMENT 0 Y12-18k03.p1k chr11 339 62 517376 517375 C 278 0.00 1433 reject_low 13 ALIGNMENT 50 Y12-18k03.p1k chr02 340 595 259627 259885 F 256 77.34 1433 reject_low 11 ALIGNMENT 0 Y12-18k03.p1k chr01 826 596 160262 160261 C 231 0.00 1433 reject_low 3 ALIGNMENT 46 Y12-18k03.p1k chr07 340 595 541403 541667 F 256 76.56 1433 reject_low 16 ALIGNMENT 215 Y12-18k03.p1k chr10 258 17 538349 538590 C 242 97.52 1433|2,0 accept 0 ALIGNMENT 0 Y12-18k03.p1k chr10 62 345 483606 483605 F 284 0.00 1433 reject_low 21 ALIGNMENT 0 Y12-18k03.p1k chr04 596 826 803208 803207 F 231 0.00 1433 reject_low 24 ALIGNMENT 0 Y12-18k03.p1k chr11 531 62 302034 302033 C 470 0.00 1433 reject_low 26 ALIGNMENT 45 Y12-18k03.p1k chr12 343 595 656466 656723 F 253 76.68 1433 reject_low 18 ALIGNMENT 0 Y12-18k03.p1k chr12 596 826 593458 593457 F 231 0.00 1433 reject_low 9 ALIGNMENT 42 Y12-18k03.p1k chr10 346 595 483606 483864 F 250 76.00 1433 reject_low 21 ALIGNMENT 0 Y12-18k03.p1k chr12 826 596 215104 215103 C 231 0.00 1433 reject_low 20 ALIGNMENT 0 Y12-18k03.p1k chr14 62 321 524763 524762 F 260 0.00 1433 reject_low 8 ALIGNMENT 0 Y12-18k03.p1k chr01 321 62 160543 160542 C 260 0.00 1433 reject_low 3 ALIGNMENT 57 Y12-18k03.p1k chr12 322 595 593180 593458 F 274 77.74 1433 reject_low 9 ALIGNMENT 0 Y12-18k03.p1k chr12 62 321 650859 650858 F 260 0.00 1433 reject_low 6 ALIGNMENT 0 Y12-18k03.p1k chr03 339 62 143027 143026 C 278 0.00 1433 reject_low 25 ALIGNMENT 43 Y12-18k03.p1k chr12 595 340 215103 215367 C 256 76.17 1433 reject_low 20 ALIGNMENT 30 Y12-18k03.p1k chr11 584 532 301980 302033 C 53 88.68 1433 reject_low 26 ALIGNMENT 937 Y12-18k03.q1k chr10 32 1183 533090 534243 F 1152 95.05 1325 accept 0 ALIGNMENT 50 Y12-18k03.p1k chr07 340 595 535266 535524 F 256 77.34 1433 reject_low 12 ALIGNMENT 0 Y12-18k03.p1k chr03 826 596 168618 168617 C 231 0.00 1433 reject_low 4 ALIGNMENT 71 Y12-18k03.p1k chr03 317 583 149508 149773 F 267 79.78 1433 reject_low 2 ALIGNMENT 0 Y12-18k03.p1k chr03 62 316 149508 149507 F 255 0.00 1433 reject_low 2 ALIGNMENT 0 Y12-18k03.p1k chr10 62 321 538050 538049 F 260 0.00 1433 reject_low 10 ALIGNMENT 0 Y12-18k03.p1k chr02 826 596 258688 258687 C 231 0.00 1433 reject_low 22 ALIGNMENT 0 Y12-18k03.p1k chr03 321 62 168896 168895 C 260 0.00 1433 reject_low 4 ALIGNMENT 0 Y12-18k03.p1k chr04 321 62 645798 645797 C 260 0.00 1433 reject_low 5 ALIGNMENT 0 Y12-18k03.p1k chr07 596 826 541667 541666 F 231 0.00 1433 reject_low 16 ALIGNMENT 0 Y12-18k03.p1k chr04 826 596 645520 645519 C 231 0.00 1433 reject_low 5 ALIGNMENT 0 Y12-18k03.p1k chr12 62 342 656466 656465 F 281 0.00 1433 reject_low 18 ALIGNMENT 0 Y12-18k03.p1k chr03 596 826 151826 151825 F 231 0.00 1433 reject_low 19 ALIGNMENT 0 Y12-18k03.p1k chr12 596 826 656723 656722 F 231 0.00 1433 reject_low 18 ALIGNMENT 0 Y12-18k03.p1k chr02 596 826 259885 259884 F 231 0.00 1433 reject_low 11 ALIGNMENT 0 Y12-18k03.p1k chr13 339 62 357285 357284 C 278 0.00 1433 reject_low 14 ALIGNMENT 50 Y12-18k03.p1k chr11 595 340 517117 517375 C 256 77.34 1433 reject_low 13 ALIGNMENT 0 Y12-18k03.p1k chr03 826 562 142804 142803 C 265 0.00 1433 reject_low 25 ALIGNMENT 58 Y12-18k03.p1k chr14 322 595 519197 519475 F 274 77.74 1433 reject_low 7 ALIGNMENT 0 Y12-18k03.p1k chr02 596 826 265470 265469 F 231 0.00 1433 reject_low 15 ALIGNMENT 0 Y12-18k03.p1k chr10 613 826 543689 543688 F 214 0.00 1433 reject_low 1 ALIGNMENT 0 Y12-18k03.p1k chr14 596 826 519475 519474 F 231 0.00 1433 reject_low 7 ALIGNMENT 0 Y12-18k03.p1k chr07 62 339 535266 535265 F 278 0.00 1433 reject_low 12 ALIGNMENT 35 Y12-18k03.p1k chr03 561 340 142803 143026 C 222 76.13 1433 reject_low 25 ALIGNMENT 963 Y12-18k04.q1k chr12 1159 32 1026877 1028016 C 1128 96.45 1383 accept 0 ALIGNMENT 985 Y12-18k04.p1k chr12 22 1196 1024016 1025185 F 1175 95.91 1438 accept 0 ALIGNMENT 649 Y12-18k05.p1k chr15 109 1029 313135 314056 F 921 92.73 1456 accept 0 ALIGNMENT 677 Y12-18k06.p1k chr12 1000 195 813566 814361 C 806 96.40 1547 accept 0 ALIGNMENT 335 Y12-18k06.p1k chr07 942 203 551943 552681 C 740 82.84 1547 reject_low 1 ALIGNMENT 916 Y12-18k07.q1k chr12 1172 11 411756 412901 C 1162 95.18 1373 accept 0 ALIGNMENT 56 Y12-18k07.q1k chrm 292 206 29083 29169 C 87 93.10 1373 reject_low 2 ALIGNMENT 0 Y12-18k07.q1k chr07 573 634 651368 651429 F 62 0.00 1373 reject_low 3 ALIGNMENT 42 Y12-18k07.q1k chr07 497 572 651292 651367 F 76 85.53 1373 reject_low 3 ALIGNMENT 0 Y12-18k07.q1k chr07 763 818 651557 651556 F 56 0.00 1373 reject_low 3 ALIGNMENT 0 Y12-18k07.q1k chrm 205 62 29170 29169 C 144 0.00 1373 reject_low 2 ALIGNMENT 283 Y12-18k07.q1k chr12 490 1104 232382 232987 F 615 83.58 1373 reject_low 1 ALIGNMENT 0 Y12-18k07.q1k chr12 62 489 232382 232381 F 428 0.00 1373 reject_low 1 ALIGNMENT 0 Y12-18k07.q1k chr07 62 496 651292 651291 F 435 0.00 1373 reject_low 3 ALIGNMENT 0 Y12-18k07.q1k chrm 818 293 29084 29083 C 526 0.00 1373 reject_low 2 ALIGNMENT 951 Y12-18k07.p1k chr12 18 1160 407531 408692 F 1143 95.63 1381 accept 0 ALIGNMENT 20 Y12-18k07.q1k chr07 635 762 651430 651557 F 128 71.88 1373 reject_low 3 ALIGNMENT 982 Y12-18k08.p1k chr03 1251 27 43639 44877 C 1225 94.86 1398 accept 0 ALIGNMENT 842 Y12-18k08.q1k chr03 32 1027 38615 39609 F 996 95.98 1425 accept 0 ALIGNMENT 45 Y12-18k10.q1k chr11 62 145 340246 340328 F 84 86.90 1412 reject_bad_break 0 ALIGNMENT 771 Y12-18k10.p1k chr11 970 23 344124 345069 C 948 94.51 1410 reject_bad_break 0 ALIGNMENT 0 Y12-18k10.q1k chr11 146 148 340329 340351 F 3 0.00 1412 reject_bad_break 0 ALIGNMENT 643 Y12-18k10.q1k chr11 149 1135 340352 341344 F 987 89.56 1412 reject_bad_break 0 ALIGNMENT 850 Y12-18k12.p1k chr09 1114 20 19460 20562 C 1095 92.97 1421 reject_low 1 ALIGNMENT 920 Y12-18k12.p1k chr10 1118 20 19437 20542 C 1099 95.00 1421 accept_tel 0 ALIGNMENT 1009 Y12-18k12.q1k chr10 32 1268 15912 17159 F 1237 95.15 1395 accept_tel 0 ALIGNMENT 105 Y12-18k12.p1k chr08 391 872 288111 288592 F 482 74.27 1421 reject_low 3 ALIGNMENT 1006 Y12-18k12.q1k chr09 32 1268 15929 17176 F 1237 95.07 1395 reject_low 1 ALIGNMENT 62 Y12-18k12.p1k chr12 862 367 290445 290940 C 496 71.98 1421 reject_low 4 ALIGNMENT 220 Y12-18k12.q1k chr15 759 1111 22396 22751 F 353 89.24 1395 reject_low 2 ALIGNMENT 0 Y12-18k12.p1k chr08 62 390 288111 288110 F 329 0.00 1421 reject_low 3 ALIGNMENT 0 Y12-18k12.p1k chr12 366 62 290941 290940 C 305 0.00 1421 reject_low 4 ALIGNMENT 963 Y12-18k12.p1k chr15 1114 20 25218 26317 C 1095 96.44 1421 reject_low 2 ALIGNMENT 0 Y12-18k12.q1k chr15 62 758 22396 22395 F 697 0.00 1395 reject_low 2 ALIGNMENT 1032 Y12-18k13.q1k chr07 1162 35 62076 63205 C 1128 98.58 1283 accept 0 ALIGNMENT 986 Y12-18k13.p1k chr07 20 1109 58306 59399 F 1090 97.43 1343 accept 0 ALIGNMENT 869 Y12-18k14.p1k chr08 1008 19 323903 324911 C 990 96.97 1292 accept 0 ALIGNMENT 939 Y12-18k14.q1k chr08 36 1156 320910 322043 F 1121 95.18 1347 accept 0 ALIGNMENT 952 Y12-18k15.p1k chr12 1067 18 455839 456908 C 1050 97.62 1361 reject_low 2 ALIGNMENT 0 Y12-18k15.q1k chr12 246 894 490543 490542 F 649 0.00 1293 reject_low 3 ALIGNMENT 203 Y12-18k15.q1k chr12 36 245 490334 490543 F 210 99.05 1293 reject_low 3 ALIGNMENT 978 Y12-18k15.p1k chr12 1158 18 464873 466045 C 1141 96.23 1361 accept 0,1 ALIGNMENT 1068 Y12-18k15.q1k chr12 36 1252 452366 453595 F 1217 96.30 1293 accept 0 ALIGNMENT 1068 Y12-18k15.q1k chr12 36 1252 461503 462732 F 1217 96.30 1293 accept 1 ALIGNMENT 0 Y12-18k16.q1k chr02 584 62 464097 464096 C 523 0.00 1340 reject_low 1 ALIGNMENT 33 Y12-18k16.q1k chr02 682 585 463999 464096 C 98 84.69 1340 reject_low 1 ALIGNMENT 1006 Y12-18k16.p1k chr14 1166 20 336252 337415 C 1147 96.60 1362 accept 0 ALIGNMENT 0 Y12-18k16.q1k chr02 62 575 780362 780361 F 514 0.00 1340 reject_low 2 ALIGNMENT 21 Y12-18k16.q1k chr13 677 600 588584 588661 C 78 83.33 1340 reject_low 3 ALIGNMENT 23 Y12-18k16.q1k chr02 576 676 780362 780462 F 101 81.19 1340 reject_low 2 ALIGNMENT 0 Y12-18k16.q1k chr02 677 894 780462 780461 F 218 0.00 1340 reject_low 2 ALIGNMENT 1001 Y12-18k16.q1k chr14 39 1163 332701 333843 F 1125 96.89 1340 accept 0 ALIGNMENT 0 Y12-18k16.q1k chr02 894 683 464000 463999 C 212 0.00 1340 reject_low 1 ALIGNMENT 0 Y12-18k16.q1k chr13 894 678 588585 588584 C 217 0.00 1340 reject_low 3 ALIGNMENT 0 Y12-18k16.q1k chr13 599 62 588662 588661 C 538 0.00 1340 reject_low 3 ALIGNMENT 1032 Y12-18k17.p1k chr03 24 1190 16855 18034 F 1167 96.32 1381 accept 0 ALIGNMENT 948 Y12-18k17.q1k chr03 1175 36 20017 21174 C 1140 96.40 1280 accept 0 ALIGNMENT 675 Y12-18k18.p1k chr12 1084 307 489754 490543 C 778 96.14 1352 reject_low 3 ALIGNMENT 992 Y12-18k18.p1k chr12 1133 20 451731 452862 C 1114 96.95 1352 reject_low 2 ALIGNMENT 1081 Y12-18k18.q1k chr12 37 1283 466391 467657 F 1247 96.63 1381 reject_low 1 ALIGNMENT 0 Y12-18k18.p1k chr12 306 62 490544 490543 C 245 0.00 1352 reject_low 3 ALIGNMENT 992 Y12-18k18.p1k chr12 1133 20 460868 461999 C 1114 96.95 1352 accept 0 ALIGNMENT 1081 Y12-18k18.q1k chr12 37 1283 457254 458520 F 1247 96.63 1381 accept 0 ALIGNMENT 1001 Y12-18k19.q1k chr09 1238 34 253338 254536 C 1205 95.44 1240 accept 0 ALIGNMENT 1037 Y12-18k19.p1k chr09 19 1305 250966 252271 F 1287 94.56 1370 accept 0 ALIGNMENT 807 Y12-18k21.q1k chr08 55 1111 339194 340251 F 1057 93.09 1225 accept 0 ALIGNMENT 951 Y12-18k21.p1k chr08 1171 27 343991 345143 C 1145 95.55 1324 accept 0 ALIGNMENT 959 Y12-18k23.p1k chr15 1224 20 289916 291124 C 1205 94.19 1300 accept 0 ALIGNMENT 934 Y12-18k23.q1k chr15 34 1064 287118 288145 F 1031 97.67 1208 accept 0 ALIGNMENT 1005 Y12-18k24.p1k chr11 17 1243 434383 435619 F 1227 95.19 1290 accept 0 ALIGNMENT 959 Y12-18k24.q1k chr11 1225 39 439654 440835 C 1187 95.53 1244 accept 0 ALIGNMENT 1047 Y12-18l01.q1k chr02 36 1317 275176 276474 F 1282 94.54 1418 accept 0 ALIGNMENT 981 Y12-18l01.p1k chr02 1149 17 279319 280467 C 1133 95.76 1344 accept 0 ALIGNMENT 736 Y12-18l04.q1k chr14 1041 5 167194 168216 C 1037 92.19 1249 accept 0 ALIGNMENT 646 Y12-18l05.q1k chr04 1027 7 1340748 1341803 C 1021 89.72 1216 accept 0 ALIGNMENT 765 Y12-18l07.p1k chr04 964 16 106758 107700 C 949 94.73 1444 accept 0 ALIGNMENT 651 Y12-18l08.q1k chr15 977 34 724011 724935 C 944 91.74 1504 accept 0 ALIGNMENT 669 Y12-18l08.p1k chr15 16 937 718772 719683 F 922 92.84 1527 accept 0 ALIGNMENT 1013 Y12-18l09.q1k chr07 35 1183 1056347 1057504 F 1149 97.13 1378 accept 0 ALIGNMENT 123 Y12-18l10.q1k chr13 251 124 379291 379418 C 128 99.22 1401 reject_low 3 ALIGNMENT 860 Y12-18l10.p1k chr10 18 985 411979 412955 F 968 97.31 1360 accept 0 ALIGNMENT 0 Y12-18l10.q1k chr07 798 262 878695 878694 C 537 0.00 1401 reject_low 2 ALIGNMENT 0 Y12-18l10.q1k chr16 120 62 56289 56288 C 59 0.00 1401 reject_low 1 ALIGNMENT 123 Y12-18l10.q1k chr16 252 121 56157 56288 C 132 98.48 1401 reject_low 1 ALIGNMENT 112 Y12-18l10.q1k chr11 130 252 302558 302680 F 123 97.56 1401 reject_low 4 ALIGNMENT 0 Y12-18l10.q1k chr07 129 62 287467 287466 C 68 0.00 1401 reject_low 5 ALIGNMENT 0 Y12-18l10.q1k chr11 62 129 302558 302557 F 68 0.00 1401 reject_low 4 ALIGNMENT 0 Y12-18l10.q1k chr13 798 252 379292 379291 C 547 0.00 1401 reject_low 3 ALIGNMENT 0 Y12-18l10.q1k chr13 123 62 379419 379418 C 62 0.00 1401 reject_low 3 ALIGNMENT 0 Y12-18l10.q1k chr07 798 245 287353 287352 C 554 0.00 1401 reject_low 5 ALIGNMENT 0 Y12-18l10.q1k chr16 798 253 56158 56157 C 546 0.00 1401 reject_low 1 ALIGNMENT 108 Y12-18l10.q1k chr07 244 130 287352 287466 C 115 98.26 1401 reject_low 5 ALIGNMENT 0 Y12-18l10.q1k chr11 253 798 302680 302679 F 546 0.00 1401 reject_low 4 ALIGNMENT 115 Y12-18l10.q1k chr07 261 130 878694 878825 C 132 96.97 1401 reject_low 2 ALIGNMENT 0 Y12-18l10.q1k chr07 129 62 878826 878825 C 68 0.00 1401 reject_low 2 ALIGNMENT 946 Y12-18l10.q1k chr10 1183 33 414892 416053 C 1151 95.48 1401 accept 0 ALIGNMENT 862 Y12-18l12.q1k chr05 40 1065 471957 472992 F 1026 95.81 1339 accept 0 ALIGNMENT 1040 Y12-18l13.q1k chr16 1279 36 71683 72939 C 1244 95.58 1380 accept_chi 0 ALIGNMENT 73 Y12-18l13.p1k chr12 455 350 457848 457950 C 106 91.51 1705 accept_chi 1 ALIGNMENT 183 Y12-18l15.p1k chr02 1030 738 265166 265472 C 293 90.44 1355 reject_low 10 ALIGNMENT 0 Y12-18l15.p1k chr07 729 62 535535 535534 C 668 0.00 1355 reject_low 6 ALIGNMENT 133 Y12-18l15.p1k chr01 716 1030 160237 160570 F 315 83.81 1355 reject_low 17 ALIGNMENT 189 Y12-18l15.p1k chr11 718 1026 517095 517416 F 309 89.97 1355 reject_low 2 ALIGNMENT 0 Y12-18l15.p1k chr07 62 737 823000 822999 F 676 0.00 1355 reject_low 8 ALIGNMENT 180 Y12-18l15.p1k chr02 1030 730 221045 221361 C 301 89.70 1355 reject_low 13 ALIGNMENT 0 Y12-18l15.p1k chr11 62 717 517095 517094 F 656 0.00 1355 reject_low 2 ALIGNMENT 189 Y12-18l15.p1k chr13 718 1026 357004 357325 F 309 89.97 1355 reject_low 3 ALIGNMENT 0 Y12-18l15.p1k chr13 62 717 362586 362585 F 656 0.00 1355 reject_low 4 ALIGNMENT 0 Y12-18l15.p1k chr07 873 841 817291 817290 C 33 0.00 1355 reject_low 23 ALIGNMENT 675 Y12-18l15.q1k chr06 37 1115 132125 133223 F 1079 88.97 1299 accept 0 ALIGNMENT 269 Y12-18l15.p1k chr06 1166 784 137510 137907 C 383 92.69 1355|0,3 accept 0 ALIGNMENT 0 Y12-18l15.p1k chr02 729 62 221362 221361 C 668 0.00 1355 reject_low 13 ALIGNMENT 0 Y12-18l15.p1k chr13 62 717 357004 357003 F 656 0.00 1355 reject_low 3 ALIGNMENT 103 Y12-18l15.p1k chr14 1030 718 524735 525063 C 313 80.83 1355 reject_low 21 ALIGNMENT 0 Y12-18l15.p1k chr15 737 62 600715 600714 C 676 0.00 1355 reject_low 7 ALIGNMENT 183 Y12-18l15.p1k chr07 1030 718 931696 932022 C 313 89.14 1355 reject_low 5 ALIGNMENT 186 Y12-18l15.p1k chr15 1030 738 600408 600714 C 293 90.78 1355 reject_low 7 ALIGNMENT 172 Y12-18l15.p1k chr10 1030 718 472382 472714 C 313 88.18 1355 reject_low 15 ALIGNMENT 181 Y12-18l15.p1k chr07 1030 730 401967 402281 C 301 89.70 1355 reject_low 11 ALIGNMENT 0 Y12-18l15.p1k chr09 62 718 197137 197136 F 657 0.00 1355 reject_low 19 ALIGNMENT 0 Y12-18l15.p1k chr07 717 62 932023 932022 C 656 0.00 1355 reject_low 5 ALIGNMENT 0 Y12-18l15.p1k chr10 62 727 354770 354769 F 666 0.00 1355 reject_low 22 ALIGNMENT 0 Y12-18l15.p1k chr11 62 717 457783 457782 F 656 0.00 1355 reject_low 9 ALIGNMENT 0 Y12-18l15.p1k chr06 883 841 138066 143745 C 43 0.00 1355 reject_low 24 ALIGNMENT 0 Y12-18l15.p1k chr01 62 717 165827 165826 F 656 0.00 1355 reject_low 18 ALIGNMENT 187 Y12-18l15.p1k chr07 1030 730 535220 535534 C 301 90.37 1355 reject_low 6 ALIGNMENT 164 Y12-18l15.p1k chr10 724 1012 354456 354758 F 289 88.58 1355 reject_low 16 ALIGNMENT 0 Y12-18l15.p1k chr07 62 715 817396 817395 F 654 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-18l15.p1k chr14 717 62 525064 525063 C 656 0.00 1355 reject_low 21 ALIGNMENT 0 Y12-18l15.p1k chr02 737 62 265473 265472 C 676 0.00 1355 reject_low 10 ALIGNMENT 50 Y12-18l15.p1k chr06 1030 884 137913 138065 C 147 81.63 1355 reject_low 24 ALIGNMENT 186 Y12-18l15.p1k chr07 716 1026 817396 817719 F 311 89.39 1355 reject_low 1 ALIGNMENT 0 Y12-18l15.p1k chr10 717 62 472715 472714 C 656 0.00 1355 reject_low 15 ALIGNMENT 0 Y12-18l15.p1k chr10 716 62 483888 483887 C 655 0.00 1355 reject_low 14 ALIGNMENT 0 Y12-18l15.p1k chr07 729 62 402282 402281 C 668 0.00 1355 reject_low 11 ALIGNMENT 0 Y12-18l15.p1k chr07 740 62 817388 817387 C 679 0.00 1355 reject_low 23 ALIGNMENT 0 Y12-18l15.p1k chr06 786 787 137905 143868 C 0 0.00 1355 accept 0 ALIGNMENT 0 Y12-18l15.p1k chr14 717 62 519498 519497 C 656 0.00 1355 reject_low 20 ALIGNMENT 0 Y12-18l15.p1k chr10 841 873 354880 354879 F 33 0.00 1355 reject_low 22 ALIGNMENT 131 Y12-18l15.p1k chr01 718 1030 165827 166158 F 313 83.71 1355 reject_low 18 ALIGNMENT 0 Y12-18l15.p1k chr12 62 717 818073 818072 F 656 0.00 1355 reject_low 12 ALIGNMENT 0 Y12-18l15.p1k chr06 727 62 143857 143856 C 666 0.00 1355 reject_low 24 ALIGNMENT 51 Y12-18l15.p1k chr10 728 840 354770 354880 F 113 84.96 1355 reject_low 22 ALIGNMENT 55 Y12-18l15.p1k chr06 840 728 143746 143856 C 113 85.84 1355 reject_low 24 ALIGNMENT 0 Y12-18l15.p1k chr01 62 715 160237 160236 F 654 0.00 1355 reject_low 17 ALIGNMENT 173 Y12-18l15.p1k chr10 1030 717 483554 483887 C 314 88.22 1355 reject_low 14 ALIGNMENT 180 Y12-18l15.p1k chr11 718 1026 457783 458104 F 309 89.00 1355 reject_low 9 ALIGNMENT 186 Y12-18l15.p1k chr07 738 1026 823000 823301 F 289 91.00 1355 reject_low 8 ALIGNMENT 49 Y12-18l15.p1k chr07 840 741 817290 817387 C 100 86.00 1355 reject_low 23 ALIGNMENT 189 Y12-18l15.p1k chr13 718 1026 362586 362907 F 309 89.97 1355 reject_low 4 ALIGNMENT 0 Y12-18l15.p1k chr10 62 723 354456 354455 F 662 0.00 1355 reject_low 16 ALIGNMENT 119 Y12-18l15.p1k chr09 719 1026 197137 197475 F 308 82.47 1355 reject_low 19 ALIGNMENT 103 Y12-18l15.p1k chr14 1030 718 519169 519497 C 313 80.83 1355 reject_low 20 ALIGNMENT 177 Y12-18l15.p1k chr12 718 1029 818073 818397 F 312 88.46 1355 reject_low 12 ALIGNMENT 707 Y12-18l15.p1k chr06 788 21 143867 144638 C 768 99.48 1355|2,0 accept 0 ALIGNMENT 980 Y12-18l16.p1k chr12 19 1175 467147 468312 F 1157 95.85 1378 reject_low 1 ALIGNMENT 973 Y12-18l16.q1k chr12 1143 43 461845 462964 C 1101 96.64 1350 accept 0 ALIGNMENT 980 Y12-18l16.p1k chr12 19 1175 458010 459175 F 1157 95.85 1378 accept 0 ALIGNMENT 973 Y12-18l16.q1k chr12 1143 43 452708 453827 C 1101 96.64 1350 reject_low 2 ALIGNMENT 975 Y12-18l17.p1k chr04 1135 22 319097 320223 C 1114 97.31 1350 accept 0 ALIGNMENT 1042 Y12-18l17.q1k chr04 37 1277 315553 316792 F 1241 95.17 1387 accept 0 ALIGNMENT 1038 Y12-18l18.q1k chr12 1251 38 106960 108192 C 1214 96.05 1370 accept 0 ALIGNMENT 1004 Y12-18l18.p1k chr12 26 1205 103963 105162 F 1180 96.69 1371 accept 0 ALIGNMENT 1069 Y12-18l19.p1k chr12 1270 30 455099 456353 C 1241 95.97 1350 accept 0 ALIGNMENT 1047 Y12-18l19.q1k chr12 36 1156 461031 462166 F 1121 98.22 1284 accept 1 ALIGNMENT 1047 Y12-18l19.q1k chr12 36 1156 451894 453029 F 1121 98.22 1284 accept 0 ALIGNMENT 0 Y12-18l19.q1k chr12 718 900 490543 490542 F 183 0.00 1284 reject_low 2 ALIGNMENT 1069 Y12-18l19.p1k chr12 1270 30 464236 465490 C 1241 95.97 1350 accept 1 ALIGNMENT 659 Y12-18l19.q1k chr12 36 717 489862 490543 F 682 98.97 1284 reject_low 2 ALIGNMENT 894 Y12-18l20.q1k chr03 1076 31 48696 49745 C 1046 95.51 1293 reject_bad_break 0 ALIGNMENT 994 Y12-18l20.p1k chr03 20 1280 44402 45663 F 1261 94.29 1382 reject_bad_break 0 ALIGNMENT 0 Y12-18l20.q1k chr03 1092 1077 48703 48695 C 16 0.00 1293 reject_bad_break 0 ALIGNMENT 34 Y12-18l20.q1k chr03 1237 1093 48549 48702 C 145 77.93 1293 reject_bad_break 0 ALIGNMENT 1002 Y12-18l21.p1k chr04 1188 19 1322787 1323968 C 1170 96.58 1306 accept_chi 1 ALIGNMENT 1014 Y12-18l21.q1k chr04 35 1194 1322795 1323959 F 1160 96.98 1291 accept_chi 0 ALIGNMENT 918 Y12-18l22.q1k chr05 38 1129 114896 115984 F 1092 95.97 1323 accept 0 ALIGNMENT 918 Y12-18l22.p1k chr05 1109 22 119142 120252 C 1088 95.22 1293 accept 0 ALIGNMENT 1030 Y12-18l23.q1k chr03 40 1223 220329 221519 F 1184 96.71 1231 accept 0 ALIGNMENT 383 Y12-18l23.p1k chr03 731 21 224299 224988 C 711 86.50 1359 accept 0 ALIGNMENT 353 Y12-18l24.q1k chr05 285 1025 115091 115805 F 741 85.29 1443 accept 0 ALIGNMENT 820 Y12-18l24.p1k chr05 1060 16 119233 120257 C 1045 94.35 1434 accept 0 ALIGNMENT 1039 Y12-18m01.p1k chr12 1256 23 463300 464540 C 1234 95.71 1336 accept 1 ALIGNMENT 294 Y12-18m01.q1k chr12 29 329 490243 490543 F 301 99.34 1267 reject_low 2 ALIGNMENT 1039 Y12-18m01.p1k chr12 1256 23 454163 455403 C 1234 95.71 1336 accept 0 ALIGNMENT 1022 Y12-18m01.q1k chr12 29 1208 461412 462612 F 1180 96.36 1267 accept 1 ALIGNMENT 1022 Y12-18m01.q1k chr12 29 1208 452275 453475 F 1180 96.36 1267 accept 0 ALIGNMENT 0 Y12-18m01.q1k chr12 330 792 490543 490542 F 463 0.00 1267 reject_low 2 ALIGNMENT 763 Y12-18m03.q1k chr16 45 1044 344931 345909 F 1000 94.50 1415 accept 0 ALIGNMENT 845 Y12-18m03.p1k chr16 1105 45 348579 349640 C 1061 94.63 1400 accept 0 ALIGNMENT 372 Y12-18m05.q1k chr02 672 57 385773 386379 C 616 88.96 1347 accept 0 ALIGNMENT 874 Y12-18m06.q1k chr12 37 1162 411142 412265 F 1126 93.78 1368 accept 0 ALIGNMENT 476 Y12-18m06.q1k chr12 1021 37 232688 233664 C 985 83.96 1368 reject_low 1 ALIGNMENT 789 Y12-18m06.p1k chr12 1016 33 414237 415212 C 984 94.92 1418 accept 0 ALIGNMENT 306 Y12-18m07.q1k chr05 402 978 297054 297617 F 577 86.66 1569 accept 0 ALIGNMENT 602 Y12-18m07.p1k chr05 1079 75 301710 302697 C 1005 88.86 1422 accept 0 ALIGNMENT 0 Y12-18m08.q1k chr04 670 97 520182 520181 C 574 0.00 1445 reject_low 1 ALIGNMENT 0 Y12-18m08.q1k chr04 87 88 437144 437518 C 0 0.00 1445 accept 0 ALIGNMENT 787 Y12-18m08.p1k chr04 118 1087 431402 432369 F 970 94.95 1453 accept 0 ALIGNMENT 40 Y12-18m08.q1k chr04 96 37 520181 520241 C 60 93.33 1445 reject_low 1 ALIGNMENT 717 Y12-18m08.q1k chr04 1026 85 436221 437146 C 942 94.16 1445|0,3 accept 0 ALIGNMENT 46 Y12-18m08.q1k chr04 90 35 437516 437572 C 56 98.21 1445|3,0 accept 0 ALIGNMENT 760 Y12-18m09.p1k chr16 1020 19 833203 834197 C 1002 93.21 1449 accept 0 ALIGNMENT 218 Y12-18m10.p1k chr12 21 249 490314 490543 F 229 98.69 1427 reject_low 2 ALIGNMENT 0 Y12-18m10.p1k chr12 250 885 490543 490542 F 636 0.00 1427 reject_low 2 ALIGNMENT 1022 Y12-18m10.q1k chr12 1157 34 465002 466124 C 1124 97.51 1367 accept 1 ALIGNMENT 1033 Y12-18m10.p1k chr12 21 1261 452346 453596 F 1241 94.92 1427 accept 0 ALIGNMENT 1033 Y12-18m10.p1k chr12 21 1261 461483 462733 F 1241 94.92 1427 accept 1 ALIGNMENT 1022 Y12-18m10.q1k chr12 1157 34 455865 456987 C 1124 97.51 1367 accept 0 ALIGNMENT 867 Y12-18m11.q1k chr12 1148 47 352483 353568 C 1102 95.10 1353 accept 0 ALIGNMENT 790 Y12-18m11.p1k chr12 18 927 348035 348937 F 910 97.36 1514 accept 0 ALIGNMENT 201 Y12-18m13.q1k chr13 51 1018 473870 474837 F 968 74.79 1299 reject_low 1 ALIGNMENT 0 Y12-18m13.p1k chr11 762 774 202291 202629 F 13 0.00 1314 accept 0 ALIGNMENT 630 Y12-18m13.p1k chr11 32 761 201545 202290 F 730 96.71 1314 accept 0 ALIGNMENT 69 Y12-18m13.p1k chr13 872 789 480611 480693 C 84 94.05 1314 reject_low 1 ALIGNMENT 0 Y12-18m13.p1k chr09 788 62 300300 300299 C 727 0.00 1314 reject_low 11 ALIGNMENT 72 Y12-18m13.p1k chr04 877 789 1352440 1352529 C 89 93.26 1314 reject_low 2 ALIGNMENT 0 Y12-18m13.p1k chr03 783 62 151361 151360 C 722 0.00 1314 reject_low 3 ALIGNMENT 0 Y12-18m13.p1k chr04 62 788 1201739 1201738 F 727 0.00 1314 reject_low 12 ALIGNMENT 0 Y12-18m13.p1k chr07 62 788 876398 876397 F 727 0.00 1314 reject_low 6 ALIGNMENT 0 Y12-18m13.p1k chr07 788 62 185794 185793 C 727 0.00 1314 reject_low 9 ALIGNMENT 1021 Y12-18m13.q1k chr11 1247 38 205744 206957 C 1210 95.70 1299 accept 0 ALIGNMENT 64 Y12-18m13.p1k chr09 870 789 300219 300299 C 82 92.68 1314 reject_low 11 ALIGNMENT 0 Y12-18m13.p1k chr05 785 62 135502 135501 C 724 0.00 1314 reject_low 4 ALIGNMENT 0 Y12-18m13.p1k chr16 62 788 582058 582057 F 727 0.00 1314 reject_low 7 ALIGNMENT 70 Y12-18m13.p1k chr07 871 789 185711 185793 C 83 93.98 1314 reject_low 9 ALIGNMENT 0 Y12-18m13.p1k chr07 62 788 122272 122271 F 727 0.00 1314 reject_low 8 ALIGNMENT 62 Y12-18m13.p1k chr06 872 784 226665 226754 C 89 91.01 1314 reject_low 10 ALIGNMENT 70 Y12-18m13.p1k chr07 789 872 122272 122356 F 84 94.05 1314 reject_low 8 ALIGNMENT 75 Y12-18m13.p1k chr05 870 786 135417 135501 C 85 95.29 1314 reject_low 4 ALIGNMENT 0 Y12-18m13.p1k chr06 783 62 226755 226754 C 722 0.00 1314 reject_low 10 ALIGNMENT 0 Y12-18m13.p1k chr04 788 62 1352530 1352529 C 727 0.00 1314 reject_low 2 ALIGNMENT 73 Y12-18m13.p1k chr05 870 785 435740 435825 C 86 94.19 1314 reject_low 5 ALIGNMENT 73 Y12-18m13.p1k chr16 789 871 582058 582140 F 83 95.18 1314 reject_low 7 ALIGNMENT 64 Y12-18m13.p1k chr10 789 862 414880 414953 F 74 94.59 1314 reject_low 13 ALIGNMENT 74 Y12-18m13.p1k chr07 789 872 876398 876481 F 84 95.24 1314 reject_low 6 ALIGNMENT 0 Y12-18m13.p1k chr13 788 62 480694 480693 C 727 0.00 1314 reject_low 1 ALIGNMENT 0 Y12-18m13.p1k chr05 784 62 435826 435825 C 723 0.00 1314 reject_low 5 ALIGNMENT 64 Y12-18m13.p1k chr04 789 862 1201739 1201812 F 74 94.59 1314 reject_low 12 ALIGNMENT 143 Y12-18m13.p1k chr11 775 1014 202630 202883 F 240 89.17 1314 accept 0 ALIGNMENT 0 Y12-18m13.p1k chr10 62 788 414880 414879 F 727 0.00 1314 reject_low 13 ALIGNMENT 74 Y12-18m13.p1k chr03 871 784 151272 151360 C 88 94.32 1314 reject_low 3 ALIGNMENT 0 Y12-18m14.q1k chr10 908 441 90780 90779 C 468 0.00 1340 reject_low 1 ALIGNMENT 958 Y12-18m14.q1k chr11 1144 35 108551 109674 C 1110 96.31 1340 accept 0 ALIGNMENT 1017 Y12-18m14.p1k chr11 16 1154 105114 106271 F 1139 97.28 1349 accept 0 ALIGNMENT 247 Y12-18m14.q1k chr10 440 121 90779 91098 C 320 92.50 1340 reject_low 1 ALIGNMENT 0 Y12-18m14.q1k chr10 120 62 91099 91098 C 59 0.00 1340 reject_low 1 ALIGNMENT 48 Y12-18m16.p1k chr15 775 683 1060650 1060742 C 93 83.87 1388 reject_low 5 ALIGNMENT 0 Y12-18m16.p1k chr15 682 459 1060743 1061220 C 224 0.00 1388 reject_low 5 ALIGNMENT 0 Y12-18m16.p1k chr04 893 884 1504217 1504211 C 10 0.00 1388 reject_low 6 ALIGNMENT 1029 Y12-18m16.p1k chr04 1158 20 1504355 1505498 C 1139 97.19 1388 accept 0 ALIGNMENT 188 Y12-18m16.p1k chr04 1086 836 1504219 1504469 C 251 90.84 1388 reject_low 1 ALIGNMENT 37 Y12-18m16.p1k chr04 771 683 1504507 1504595 C 89 80.90 1388 reject_low 1,6 ALIGNMENT 0 Y12-18m16.p1k chr04 1045 62 1504680 1504679 C 984 0.00 1388 reject_low 2 ALIGNMENT 0 Y12-18m16.p1k chr15 433 62 1061246 1061245 C 372 0.00 1388 reject_low 3,5 ALIGNMENT 65 Y12-18m16.p1k chr04 1158 1046 1504565 1504679 C 113 85.84 1388 reject_low 2 ALIGNMENT 80 Y12-18m16.p1k chr15 1005 603 1060657 1061071 C 403 74.44 1388 reject_low 3 ALIGNMENT 0 Y12-18m16.p1k chr15 1105 62 1060767 1060766 C 1044 0.00 1388 reject_low 4 ALIGNMENT 22 Y12-18m16.p1k chr15 1156 1106 1060714 1060766 C 51 84.31 1388 reject_low 4 ALIGNMENT 29 Y12-18m16.p1k chr04 1158 1104 1504160 1504216 C 55 85.45 1388 reject_low 1 ALIGNMENT 0 Y12-18m16.p1k chr04 682 62 1504596 1504595 C 621 0.00 1388 reject_low 1,6 ALIGNMENT 0 Y12-18m16.p1k chr04 1103 1087 1504217 1504218 C 17 0.00 1388 reject_low 1 ALIGNMENT 0 Y12-18m16.p1k chr04 855 772 1504240 1504506 C 84 0.00 1388 reject_low 6 ALIGNMENT 0 Y12-18m16.p1k chr15 908 776 1060651 1060650 C 133 0.00 1388 reject_low 5 ALIGNMENT 0 Y12-18m16.p1k chr15 602 459 1061072 1061220 C 144 0.00 1388 reject_low 3 ALIGNMENT 104 Y12-18m16.p1k chr04 1027 894 1504083 1504216 C 134 92.54 1388 reject_low 6 ALIGNMENT 23 Y12-18m16.p1k chr15 458 434 1061221 1061245 C 25 100.00 1388 reject_low 3,5 ALIGNMENT 24 Y12-18m16.p1k chr04 883 856 1504212 1504239 C 28 96.43 1388 reject_low 6 ALIGNMENT 930 Y12-18m16.q1k chr04 40 1182 1499372 1500530 F 1143 95.45 1316 accept 0 ALIGNMENT 0 Y12-18m16.p1k chr04 835 772 1504470 1504506 C 64 0.00 1388 reject_low 1 ALIGNMENT 1020 Y12-18m17.q1k chr05 33 1179 538972 540121 F 1147 97.12 1290 accept 0 ALIGNMENT 948 Y12-18m17.p1k chr05 1112 20 543103 544209 C 1093 96.43 1324 accept 0 ALIGNMENT 1016 Y12-18m18.p1k chr07 1285 22 993282 994559 C 1264 94.54 1384 accept 0 ALIGNMENT 1036 Y12-18m18.q1k chr07 39 1243 988976 990188 F 1205 96.60 1351 accept 0 ALIGNMENT 1009 Y12-18m21.p1k chr16 25 1235 790071 791293 F 1211 94.47 1334 accept 0 ALIGNMENT 998 Y12-18m21.q1k chr16 1165 33 793246 794374 C 1133 96.56 1206 accept 0 ALIGNMENT 757 Y12-18m22.q1k chr15 986 35 333174 334114 C 952 94.75 1347 accept 0 ALIGNMENT 773 Y12-18m22.p1k chr15 20 914 329543 330430 F 895 97.09 1479 accept 0 ALIGNMENT 699 Y12-18n01.p1k chr13 19 958 188104 189051 F 940 93.51 1242 ambiguous_trans 16 ALIGNMENT 754 Y12-18n01.p1k chr15 19 997 598755 599749 F 979 94.48 1242 ambiguous_trans 9 ALIGNMENT 727 Y12-18n01.p1k chr12 997 19 216072 217066 C 979 93.67 1242 ambiguous_trans_ua 14 ALIGNMENT 675 Y12-18n01.p1k chr10 19 958 476317 477264 F 940 92.66 1242 ambiguous_trans 23 ALIGNMENT 696 Y12-18n01.p1k chr13 19 958 200271 201218 F 940 93.40 1242 ambiguous_trans 20 ALIGNMENT 838 Y12-18n01.p1k chr10 19 997 481901 482895 F 979 97.34 1242 ambiguous_trans 4 ALIGNMENT 751 Y12-18n01.p1k chr02 19 997 263513 264507 F 979 94.38 1242 ambiguous_trans 10 ALIGNMENT 733 Y12-18n01.p1k chr13 997 19 373687 374681 C 979 93.87 1242 ambiguous_trans 12 ALIGNMENT 669 Y12-18n01.p1k chr16 958 19 851663 852610 C 940 92.45 1242 ambiguous_trans 24 ALIGNMENT 859 Y12-18n01.p1k chr02 19 997 224976 225970 F 979 98.06 1242 ambiguous_trans 1 ALIGNMENT 847 Y12-18n01.p1k chr07 19 997 539704 540698 F 979 97.65 1242 ambiguous_trans 3 ALIGNMENT 699 Y12-18n01.p1k chr04 19 958 1099702 1100649 F 940 93.51 1242 ambiguous_trans 15 ALIGNMENT 736 Y12-18n01.p1k chr05 997 19 493482 494476 C 979 93.97 1242 ambiguous_trans 11 ALIGNMENT 696 Y12-18n01.p1k chr05 958 19 444430 445377 C 940 93.40 1242 ambiguous_trans 18 ALIGNMENT 730 Y12-18n01.p1k chr07 997 19 818383 819377 C 979 93.67 1242 ambiguous_trans 13 ALIGNMENT 939 Y12-18n01.q1k chr07 37 1086 704663 705717 F 1050 97.71 1298 accept 0 ALIGNMENT 699 Y12-18n01.p1k chr16 19 958 848351 849298 F 940 93.51 1242 ambiguous_trans 17 ALIGNMENT 795 Y12-18n01.p1k chr04 958 19 987753 988700 C 940 96.81 1242 ambiguous_trans 6 ALIGNMENT 795 Y12-18n01.p1k chr04 19 958 1210630 1211577 F 940 96.81 1242 ambiguous_trans 7 ALIGNMENT 696 Y12-18n01.p1k chr12 958 19 477012 477959 C 940 93.40 1242 ambiguous_trans 19 ALIGNMENT 696 Y12-18n01.p1k chr15 19 958 121642 122589 F 940 93.40 1242 ambiguous_trans 21 ALIGNMENT 795 Y12-18n01.p1k chr12 19 958 654764 655711 F 940 96.81 1242 ambiguous_trans 8 ALIGNMENT 820 Y12-18n01.p1k chr14 997 19 97595 98589 C 979 96.73 1242 ambiguous_trans 5 ALIGNMENT 859 Y12-18n01.p1k chr13 997 19 357989 358983 C 979 98.06 1242 ambiguous_trans 2 ALIGNMENT 696 Y12-18n01.p1k chr16 19 958 60391 61338 F 940 93.40 1242 ambiguous_trans 22 ALIGNMENT 663 Y12-18n01.p1k chr16 958 19 805675 806622 C 940 92.23 1242 ambiguous_trans 25 ALIGNMENT 594 Y12-18n02.p1k chr13 998 206 297186 297964 C 793 94.33 1562 accept 0 ALIGNMENT 870 Y12-18n02.q1k chr13 1 1132 292901 294030 F 1132 93.99 1302 accept 0 ALIGNMENT 492 Y12-18n03.p1k chr13 13 1098 188104 189189 F 1086 83.24 1364 ambiguous_trans 11 ALIGNMENT 583 Y12-18n03.p1k chr12 13 1069 654764 655820 F 1057 86.38 1364 ambiguous_trans 7 ALIGNMENT 640 Y12-18n03.p1k chr10 13 1078 481901 482966 F 1066 87.99 1364 ambiguous_trans 3 ALIGNMENT 468 Y12-18n03.p1k chr10 13 1098 476317 477402 F 1086 82.50 1364 ambiguous_trans 17 ALIGNMENT 473 Y12-18n03.p1k chr04 13 1025 1099702 1100714 F 1013 83.71 1364 ambiguous_trans 19 ALIGNMENT 553 Y12-18n03.p1k chr02 13 1078 263513 264578 F 1066 85.37 1364 ambiguous_trans 10 ALIGNMENT 491 Y12-18n03.p1k chr07 1070 13 562771 563828 C 1058 83.55 1364 ambiguous_trans 18 ALIGNMENT 649 Y12-18n03.p1k chr07 13 1078 539704 540769 F 1066 88.27 1364 ambiguous_trans 2 ALIGNMENT 467 Y12-18n03.p1k chr15 13 1025 121642 122654 F 1013 83.51 1364 ambiguous_trans 23 ALIGNMENT 467 Y12-18n03.p1k chr05 1025 13 444365 445377 C 1013 83.51 1364 ambiguous_trans 21 ALIGNMENT 538 Y12-18n03.p1k chr13 1078 13 373616 374681 C 1066 84.90 1364 ambiguous_trans 14 ALIGNMENT 397 Y12-18n03.p1k chr13 13 777 200271 201031 F 765 85.36 1364 reject_low 25 ALIGNMENT 661 Y12-18n03.p1k chr13 1078 13 357918 358983 C 1066 88.74 1364 ambiguous_trans 1 ALIGNMENT 533 Y12-18n03.p1k chr12 1078 15 216001 217064 C 1064 84.77 1364 ambiguous_trans_ua 16 ALIGNMENT 556 Y12-18n03.p1k chr15 13 1078 598755 599820 F 1066 85.46 1364 ambiguous_trans 9 ALIGNMENT 454 Y12-18n03.p1k chr16 1069 13 805566 806622 C 1057 82.40 1364 ambiguous_trans 24 ALIGNMENT 461 Y12-18n03.p1k chr16 1106 15 851516 852608 C 1092 82.23 1364 ambiguous_trans 5 ALIGNMENT 661 Y12-18n03.p1k chr02 13 1078 224976 226041 F 1066 88.65 1364 ambiguous_trans 0 ALIGNMENT 567 Y12-18n03.p1k chr04 13 1025 1210630 1211642 F 1013 86.67 1364 ambiguous_trans 8 ALIGNMENT 541 Y12-18n03.p1k chr05 1078 13 493411 494476 C 1066 84.99 1364 ambiguous_trans 13 ALIGNMENT 584 Y12-18n03.p1k chr04 1070 13 987643 988700 C 1058 86.39 1364 ambiguous_trans 6 ALIGNMENT 463 Y12-18n03.p1k chr04 1069 13 646422 647478 C 1057 82.69 1364 ambiguous_trans 20 ALIGNMENT 535 Y12-18n03.p1k chr07 1078 13 818312 819377 C 1066 84.71 1364 ambiguous_trans 15 ALIGNMENT 467 Y12-18n03.p1k chr12 1025 13 476947 477959 C 1013 83.51 1364 ambiguous_trans 22 ALIGNMENT 624 Y12-18n03.p1k chr14 1078 14 97524 98588 C 1065 87.51 1364 ambiguous_trans 4 ALIGNMENT 492 Y12-18n03.p1k chr16 13 1098 848351 849436 F 1086 83.24 1364 ambiguous_trans 12 ALIGNMENT 953 Y12-18n04.q1k chr06 1124 12 54432 55551 C 1113 96.59 1320 accept 0 ALIGNMENT 700 Y12-18n05.q1k chr05 39 1012 116101 117059 F 974 92.09 1396 accept 0 ALIGNMENT 768 Y12-18n06.q1k chr12 1003 39 1070391 1071352 C 965 94.82 1459 ambiguous_tel 10 ALIGNMENT 775 Y12-18n06.q1k chr16 1003 39 946859 947817 C 965 95.03 1459 ambiguous_tel 7 ALIGNMENT 794 Y12-18n06.q1k chr10 39 1003 350 1304 F 965 95.54 1459 ambiguous_tel 1 ALIGNMENT 768 Y12-18n06.q1k chr12 1003 39 1077054 1078015 C 965 94.82 1459 ambiguous_tel 11 ALIGNMENT 775 Y12-18n06.q1k chr16 39 1003 160 1118 F 965 95.03 1459 ambiguous_tel 6 ALIGNMENT 765 Y12-18n06.q1k chr02 39 1003 160 1121 F 965 94.72 1459 ambiguous_tel 13 ALIGNMENT 762 Y12-18n06.q1k chr08 1003 39 561206 562167 C 965 94.61 1459 ambiguous_tel 15 ALIGNMENT 762 Y12-18n06.q1k chr13 39 1003 341 1302 F 965 94.61 1459 ambiguous_tel 16 ALIGNMENT 775 Y12-18n06.q1k chr07 1003 39 1089759 1090717 C 965 95.03 1459 ambiguous_tel 4 ALIGNMENT 404 Y12-18n06.q1k chr06 468 1003 2 528 F 536 93.66 1459 reject_low 18 ALIGNMENT 768 Y12-18n06.q1k chr04 1003 39 1530853 1531814 C 965 94.82 1459 ambiguous_tel 9 ALIGNMENT 771 Y12-18n06.q1k chr08 39 1003 325 1286 F 965 94.92 1459 ambiguous_tel 8 ALIGNMENT 775 Y12-18n06.q1k chr14 39 1003 251 1209 F 965 95.03 1459 ambiguous_tel 5 ALIGNMENT 783 Y12-18n06.q1k chr05 39 1003 144 1105 F 965 95.34 1459 ambiguous_tel 2 ALIGNMENT 735 Y12-18n06.q1k chr12 39 1003 363 1318 F 965 93.99 1459 ambiguous_tel 17 ALIGNMENT 768 Y12-18n06.q1k chr15 1003 39 1090018 1090979 C 965 94.82 1459 ambiguous_tel 12 ALIGNMENT 0 Y12-18n06.q1k chr06 62 467 2 1 F 406 0.00 1459 reject_low 18 ALIGNMENT 794 Y12-18n06.q1k chr09 39 1003 367 1321 F 965 95.54 1459 ambiguous_tel 0 ALIGNMENT 765 Y12-18n06.q1k chr12 39 1003 6000 6961 F 965 94.72 1459 ambiguous_tel 14 ALIGNMENT 775 Y12-18n06.q1k chr05 1003 39 575682 576640 C 965 95.03 1459 ambiguous_tel 3 ALIGNMENT 761 Y12-18n07.q1k chr16 869 27 526858 527695 C 843 97.39 1446 reject_bad_break 0 ALIGNMENT 60 Y12-18n07.q1k chr16 1073 905 526687 526842 C 169 83.43 1446 reject_bad_break 0 ALIGNMENT 0 Y12-18n07.q1k chr16 904 870 526843 526857 C 35 0.00 1446 reject_bad_break 0 ALIGNMENT 910 Y12-18n10.q1k chr07 1079 27 794601 795660 C 1053 96.87 1328 accept 0 ALIGNMENT 898 Y12-18n11.q1k chr09 31 1024 278355 279364 F 994 97.79 1315 accept 0 ALIGNMENT 1074 Y12-18n13.q1k chr12 39 1228 462437 463638 F 1190 97.14 1371 accept 1 ALIGNMENT 946 Y12-18n13.p1k chr12 1189 19 456978 458177 C 1171 93.77 1375 accept 0 ALIGNMENT 946 Y12-18n13.p1k chr12 1189 19 466115 467314 C 1171 93.77 1375 accept 1 ALIGNMENT 1074 Y12-18n13.q1k chr12 39 1228 453300 454501 F 1190 97.14 1371 accept 0 ALIGNMENT 341 Y12-18n14.q1k chr12 180 811 1042298 1042910 F 632 87.34 1465 accept 0 ALIGNMENT 151 Y12-18n15.p1k chr03 506 256 4073 4322 C 251 88.45 1392 reject_low 18 ALIGNMENT 0 Y12-18n15.q1k chr06 462 509 4913 4919 F 48 0.00 1325 reject_low 25 ALIGNMENT 263 Y12-18n15.q1k chr14 41 386 6262 6616 F 346 93.06 1325 reject_low 13 ALIGNMENT 0 Y12-18n15.q1k chr12 387 387 1065015 1065153 C 1 0.00 1325 reject_low 6 ALIGNMENT 344 Y12-18n15.q1k chr04 411 1101 191 895 F 691 87.70 1325 reject_low 22 ALIGNMENT 366 Y12-18n15.q1k chr01 392 1079 86 767 F 688 88.66 1325 reject_low 20 ALIGNMENT 0 Y12-18n15.p1k chr03 255 77 4323 4322 C 179 0.00 1392 reject_low 18 ALIGNMENT 295 Y12-18n15.q1k chr10 38 338 6631 6931 F 301 100.00 1325 reject_low 11 ALIGNMENT 0 Y12-18n15.q1k chr12 940 387 1071653 1071652 C 554 0.00 1325 reject_low 14 ALIGNMENT 601 Y12-18n15.q1k chr02 38 1089 5488 6585 F 1052 88.31 1325 reject_low 2 ALIGNMENT 0 Y12-18n15.q1k chr10 339 576 6932 7224 F 238 0.00 1325 reject_low 11 ALIGNMENT 326 Y12-18n15.q1k chr14 388 1109 6706 7428 F 722 86.15 1325 reject_low 13 ALIGNMENT 0 Y12-18n15.p1k chr03 298 77 292112 292111 C 222 0.00 1392 reject_low 27 ALIGNMENT 0 Y12-18n15.q1k chr12 387 391 5661 11374 F 5 0.00 1325 reject_low 12 ALIGNMENT 295 Y12-18n15.q1k chr09 38 338 6648 6948 F 301 100.00 1325 reject_low 10 ALIGNMENT 361 Y12-18n15.q1k chr12 1089 388 1064301 1065014 C 702 87.46 1325 reject_low 6 ALIGNMENT 265 Y12-18n15.q1k chr08 386 38 556987 557344 C 349 93.12 1325 reject_low 16 ALIGNMENT 945 Y12-18n15.q1k chr05 1109 38 569594 570673 C 1072 98.13 1325 accept 0 ALIGNMENT 408 Y12-18n15.q1k chr10 1101 388 744826 745545 C 714 89.50 1325 reject_low 17 ALIGNMENT 30 Y12-18n15.q1k chr06 388 461 4839 4912 F 74 85.14 1325 reject_low 25 ALIGNMENT 0 Y12-18n15.p1k chr08 77 255 7993 7992 F 179 0.00 1392 reject_low 24 ALIGNMENT 22 Y12-18n15.p1k chr03 507 459 291917 291965 C 49 83.67 1392 reject_low 27 ALIGNMENT 263 Y12-18n15.q1k chr04 386 41 1525451 1525805 C 346 93.06 1325 reject_low 8 ALIGNMENT 308 Y12-18n15.q1k chr10 577 1101 7225 7758 F 525 89.71 1325 reject_low 11 ALIGNMENT 444 Y12-18n15.p1k chr05 16 511 566454 566950 F 496 97.18 1392 accept 0 ALIGNMENT 0 Y12-18n15.q1k chr04 62 410 191 190 F 349 0.00 1325 reject_low 22 ALIGNMENT 263 Y12-18n15.q1k chr06 41 386 4329 4683 F 346 93.06 1325 reject_low 25 ALIGNMENT 263 Y12-18n15.q1k chr12 386 41 1071652 1072006 C 346 93.06 1325 reject_low 14 ALIGNMENT 0 Y12-18n15.q1k chr10 387 62 745546 745545 C 326 0.00 1325 reject_low 17 ALIGNMENT 260 Y12-18n15.q1k chr12 41 386 10841 11195 F 346 92.77 1325 reject_low 15 ALIGNMENT 179 Y12-18n15.p1k chr03 506 255 1179 1430 C 252 91.67 1392 reject_low 7 ALIGNMENT 358 Y12-18n15.q1k chr02 1101 392 812382 813108 C 710 87.75 1325 reject_low 21 ALIGNMENT 260 Y12-18n15.q1k chr12 41 386 5306 5660 F 346 92.77 1325 reject_low 12 ALIGNMENT 308 Y12-18n15.q1k chr09 577 1101 7242 7775 F 525 89.71 1325 reject_low 10 ALIGNMENT 117 Y12-18n15.p1k chr07 430 256 905 1079 C 175 90.86 1392 reject_low 26 ALIGNMENT 0 Y12-18n15.p1k chr03 458 429 291966 291982 C 30 0.00 1392 reject_low 27 ALIGNMENT 314 Y12-18n15.q1k chr06 510 1109 4920 5530 F 600 87.50 1325 reject_low 25 ALIGNMENT 409 Y12-18n15.q1k chr09 1079 388 439099 439801 C 692 89.74 1325 reject_low 19 ALIGNMENT 304 Y12-18n15.q1k chr08 1083 410 556134 556823 C 674 85.61 1325 reject_low 16 ALIGNMENT 356 Y12-18n15.q1k chr04 1101 408 1524617 1525312 C 694 88.04 1325 reject_low 8 ALIGNMENT 34 Y12-18n15.p1k chr07 506 465 863 904 C 42 95.24 1392 reject_low 26 ALIGNMENT 0 Y12-18n15.q1k chr04 407 387 1525313 1525450 C 21 0.00 1325 reject_low 8 ALIGNMENT 260 Y12-18n15.q1k chr13 41 386 5182 5536 F 346 92.77 1325 reject_low 9 ALIGNMENT 0 Y12-18n15.q1k chr01 62 391 86 85 F 330 0.00 1325 reject_low 20 ALIGNMENT 0 Y12-18n15.p1k chr11 255 77 665307 665306 C 179 0.00 1392 reject_low 23 ALIGNMENT 573 Y12-18n15.q1k chr07 1079 41 1083675 1084706 C 1039 88.26 1325 reject_low 3 ALIGNMENT 0 Y12-18n15.q1k chr09 339 576 6949 7241 F 238 0.00 1325 reject_low 10 ALIGNMENT 0 Y12-18n15.q1k chr08 409 387 556824 556986 C 23 0.00 1325 reject_low 16 ALIGNMENT 0 Y12-18n15.q1k chr12 387 940 11195 11194 F 554 0.00 1325 reject_low 15 ALIGNMENT 0 Y12-18n15.p1k chr12 569 77 457607 457606 C 493 0.00 1392 reject_low 1 ALIGNMENT 323 Y12-18n15.q1k chr12 386 38 1065154 1065503 C 349 98.28 1325 reject_low 6 ALIGNMENT 126 Y12-18n15.p1k chr11 506 256 665068 665306 C 251 87.25 1392 reject_low 23 ALIGNMENT 0 Y12-18n15.p1k chr03 254 77 1431 1430 C 178 0.00 1392 reject_low 7 ALIGNMENT 555 Y12-18n15.q1k chr15 1101 41 1083927 1084970 C 1061 87.65 1325 reject_low 5 ALIGNMENT 0 Y12-18n15.q1k chr14 387 387 6617 6705 F 1 0.00 1325 reject_low 13 ALIGNMENT 0 Y12-18n15.p1k chr07 464 431 905 904 C 34 0.00 1392 reject_low 26 ALIGNMENT 0 Y12-18n15.q1k chr09 387 62 439802 439801 C 326 0.00 1325 reject_low 19 ALIGNMENT 0 Y12-18n15.q1k chr02 391 62 813109 813108 C 330 0.00 1325 reject_low 21 ALIGNMENT 0 Y12-18n15.q1k chr13 387 391 5537 5608 F 5 0.00 1325 reject_low 9 ALIGNMENT 558 Y12-18n15.q1k chr16 41 1101 6171 7214 F 1061 87.75 1325 reject_low 4 ALIGNMENT 63 Y12-18n15.p1k chr08 256 424 7993 8150 F 169 83.43 1392 reject_low 24 ALIGNMENT 102 Y12-18n15.p1k chr12 905 570 457279 457606 C 336 78.87 1392 reject_low 1 ALIGNMENT 357 Y12-18n15.q1k chr12 392 1089 11375 12062 F 698 87.82 1325 reject_low 12 ALIGNMENT 93 Y12-18n15.p1k chr03 428 299 291983 292111 C 130 93.08 1392 reject_low 27 ALIGNMENT 0 Y12-18n15.p1k chr07 255 77 1080 1079 C 179 0.00 1392 reject_low 26 ALIGNMENT 0 Y12-18n15.q1k chr06 387 387 4684 4838 F 1 0.00 1325 reject_low 25 ALIGNMENT 358 Y12-18n15.q1k chr13 392 1101 5609 6335 F 710 87.75 1325 reject_low 9 ALIGNMENT 328 Y12-18n16.p1k chr12 458 32 1046759 1047179 C 427 95.08 1412 accept 0 ALIGNMENT 902 Y12-18n16.q1k chr12 64 1097 1042188 1043230 F 1034 97.29 1292 accept 0 ALIGNMENT 973 Y12-18n17.q1k chr12 1227 62 456301 457472 C 1166 94.94 1356 accept 0 ALIGNMENT 973 Y12-18n17.q1k chr12 1227 62 465438 466609 C 1166 94.94 1356 accept 1 ALIGNMENT 996 Y12-18n18.p1k chr10 20 1229 34014 35233 F 1210 95.21 1392 accept 0 ALIGNMENT 1022 Y12-18n18.q1k chr10 1203 37 36954 38136 C 1167 96.49 1372 accept 0 ALIGNMENT 1006 Y12-18n20.p1k chr04 1278 16 1462352 1463611 C 1263 95.17 1394 accept 0 ALIGNMENT 859 Y12-18n20.q1k chr09 1033 37 207280 208289 C 997 96.59 1257 ambiguous_trans 2 ALIGNMENT 871 Y12-18n20.q1k chr07 1033 37 709184 710193 C 997 96.99 1257 ambiguous_trans 1 ALIGNMENT 1054 Y12-18n22.q1k chr07 1226 35 992847 994044 C 1192 97.32 1270 accept 0 ALIGNMENT 506 Y12-18n22.p1k chr07 18 678 989625 990286 F 661 93.34 1424 accept 0 ALIGNMENT 1006 Y12-18n24.q1k chr03 1185 39 35422 36565 C 1147 96.69 1248 accept 0 ALIGNMENT 1006 Y12-18n24.p1k chr03 24 1306 31974 33263 F 1283 94.54 1325 accept 0 ALIGNMENT 962 Y12-18o01.p1k chr04 28 1147 766952 768067 F 1120 96.61 1306 accept 0 ALIGNMENT 988 Y12-18o01.q1k chr04 1255 29 771830 773055 C 1227 94.62 1262 accept 0 ALIGNMENT 906 Y12-18o03.q1k chr05 1101 49 427546 428594 C 1053 96.11 1344 accept 0 ALIGNMENT 507 Y12-18o03.p1k chr05 121 816 423151 423841 F 696 92.10 1448 accept 0 ALIGNMENT 22 Y12-18o04.q1k chr03 1200 1263 32325 32384 F 64 82.81 1361 reject_bad_break 0 ALIGNMENT 850 Y12-18o04.q1k chr03 12 1096 31172 32234 F 1085 95.12 1361 reject_bad_break 0 ALIGNMENT 0 Y12-18o04.q1k chr03 1097 1199 32235 32324 F 103 0.00 1361 reject_bad_break 0 ALIGNMENT 486 Y12-18o04.p1k chr03 758 99 34923 35572 C 660 93.03 1495 reject_bad_break 0 ALIGNMENT 311 Y12-18o06.q1k chr16 34 711 840548 841215 F 678 83.19 1489 accept 0 ALIGNMENT 108 Y12-18o06.p1k chr16 325 107 843169 843386 C 219 84.02 1595 accept 0 ALIGNMENT 517 Y12-18o07.q1k chr13 737 49 327057 327732 C 689 94.19 1447 accept 0 ALIGNMENT 424 Y12-18o08.q1k chr13 636 34 199232 199831 C 603 91.21 1559 ambiguous_trans 19 ALIGNMENT 433 Y12-18o08.q1k chr13 34 636 359423 360022 F 603 91.71 1559 ambiguous_trans 7 ALIGNMENT 433 Y12-18o08.q1k chr05 34 636 494916 495515 F 603 91.71 1559 ambiguous_trans 4 ALIGNMENT 436 Y12-18o08.q1k chr12 34 636 217506 218105 F 603 91.87 1559 ambiguous_trans_ua 3 ALIGNMENT 463 Y12-18o08.q1k chr04 34 636 880719 881318 F 603 93.37 1559 ambiguous_trans 2 ALIGNMENT 433 Y12-18o08.q1k chr08 34 636 546029 546628 F 603 91.71 1559 ambiguous_trans 6 ALIGNMENT 466 Y12-18o08.q1k chr02 636 34 262471 263070 C 603 93.53 1559 ambiguous_trans 0 ALIGNMENT 424 Y12-18o08.q1k chr13 34 636 375121 375720 F 603 91.21 1559 ambiguous_trans 20 ALIGNMENT 427 Y12-18o08.q1k chr04 636 34 1098663 1099262 C 603 91.38 1559 ambiguous_trans 9 ALIGNMENT 406 Y12-18o08.q1k chr12 636 34 596044 596643 C 603 90.22 1559 ambiguous_trans 22 ALIGNMENT 427 Y12-18o08.q1k chr07 34 636 564268 564867 F 603 91.38 1559 ambiguous_trans 11 ALIGNMENT 424 Y12-18o08.q1k chr05 34 636 445817 446416 F 603 91.21 1559 ambiguous_trans 15 ALIGNMENT 424 Y12-18o08.q1k chr15 636 34 120603 121202 C 603 91.21 1559 ambiguous_trans 21 ALIGNMENT 424 Y12-18o08.q1k chr13 636 34 187065 187664 C 603 91.21 1559 ambiguous_trans 18 ALIGNMENT 433 Y12-18o08.q1k chr07 34 636 819817 820416 F 603 91.71 1559 ambiguous_trans 5 ALIGNMENT 463 Y12-18o08.q1k chr02 636 34 223937 224536 C 603 93.37 1559 ambiguous_trans 1 ALIGNMENT 427 Y12-18o08.q1k chr16 636 34 847312 847911 C 603 91.38 1559 ambiguous_trans 14 ALIGNMENT 406 Y12-18o08.q1k chr16 34 636 853050 853649 F 603 90.22 1559 ambiguous_trans 23 ALIGNMENT 424 Y12-18o08.q1k chr12 636 34 653725 654324 C 603 91.21 1559 ambiguous_trans 17 ALIGNMENT 427 Y12-18o08.q1k chr16 34 636 807062 807661 F 603 91.38 1559 ambiguous_trans 13 ALIGNMENT 424 Y12-18o08.q1k chr10 636 34 480862 481461 C 603 91.21 1559 ambiguous_trans 16 ALIGNMENT 427 Y12-18o08.q1k chr04 34 636 989140 989739 F 603 91.38 1559 ambiguous_trans 8 ALIGNMENT 427 Y12-18o08.q1k chr10 636 34 475278 475877 C 603 91.38 1559 ambiguous_trans 12 ALIGNMENT 427 Y12-18o08.q1k chr07 636 34 538665 539264 C 603 91.38 1559 ambiguous_trans 10 ALIGNMENT 676 Y12-18o09.p1k chr12 925 59 465884 466733 C 867 94.23 1473 accept 0 ALIGNMENT 98 Y12-18o09.q1k chr12 558 819 489754 490005 F 262 82.06 1468 reject_low 2 ALIGNMENT 0 Y12-18o09.q1k chr12 122 186 451419 451418 F 65 0.00 1468 reject_low 1 ALIGNMENT 676 Y12-18o09.p1k chr12 925 59 456747 457596 C 867 94.23 1473 reject_low 1 ALIGNMENT 383 Y12-18o09.q1k chr12 187 851 451419 452064 F 665 88.57 1468 reject_low 1 ALIGNMENT 0 Y12-18o09.q1k chr12 122 557 489754 489753 F 436 0.00 1468 reject_low 2 ALIGNMENT 478 Y12-18o09.q1k chr12 52 851 460420 461201 F 800 89.25 1468 accept 0 ALIGNMENT 29 Y12-18o12.p1k chr09 960 1010 169456 169506 F 51 92.16 1350 reject_low 2 ALIGNMENT 0 Y12-18o12.p1k chr13 960 62 44407 44406 C 899 0.00 1350 reject_low 5 ALIGNMENT 20 Y12-18o12.p1k chr08 963 998 541246 541281 F 36 91.67 1350 reject_low 9 ALIGNMENT 21 Y12-18o12.p1k chr12 995 960 556338 556373 C 36 91.67 1350 reject_low 8 ALIGNMENT 858 Y12-18o12.q1k chr04 1150 35 926956 928098 C 1116 93.37 1355 accept 0 ALIGNMENT 0 Y12-18o12.p1k chr14 975 62 333294 333293 C 914 0.00 1350 reject_low 4 ALIGNMENT 24 Y12-18o12.p1k chr13 992 961 44375 44406 C 32 96.88 1350 reject_low 5 ALIGNMENT 23 Y12-18o12.p1k chr15 998 963 235376 235411 C 36 94.44 1350 reject_low 7 ALIGNMENT 0 Y12-18o12.q1k chr04 501 154 927582 927581 C 348 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-18o12.p1k chr05 62 960 83159 83158 F 899 0.00 1350 reject_low 3 ALIGNMENT 0 Y12-18o12.q1k chr04 763 537 927548 927547 C 227 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-18o12.p1k chr09 62 959 169456 169455 F 898 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-18o12.p1k chr15 962 62 235412 235411 C 901 0.00 1350 reject_low 7 ALIGNMENT 0 Y12-18o12.p1k chr08 62 962 541246 541245 F 901 0.00 1350 reject_low 9 ALIGNMENT 0 Y12-18o12.p1k chr06 963 62 160594 160593 C 902 0.00 1350 reject_low 6 ALIGNMENT 22 Y12-18o12.p1k chr05 961 1019 83159 83217 F 59 86.44 1350 reject_low 3 ALIGNMENT 0 Y12-18o12.p1k chr12 959 62 556374 556373 C 898 0.00 1350 reject_low 8 ALIGNMENT 924 Y12-18o12.p1k chr04 24 1153 922103 923243 F 1130 95.49 1350 accept 0 ALIGNMENT 23 Y12-18o12.p1k chr06 999 964 160558 160593 C 36 94.44 1350 reject_low 6 ALIGNMENT 33 Y12-18o12.q1k chr04 536 502 927547 927581 C 35 100.00 1355 reject_low 1 ALIGNMENT 22 Y12-18o12.p1k chr14 1007 976 333262 333293 C 32 96.88 1350 reject_low 4 ALIGNMENT 859 Y12-18o13.p1k chr13 102 1169 221432 222512 F 1068 94.66 1347 accept_chi 0 ALIGNMENT 829 Y12-18o13.q1k chr07 1032 1 690393 691411 C 1032 95.25 1318 accept_chi 1 ALIGNMENT 907 Y12-18o14.p1k chr02 1090 30 88796 89870 C 1061 96.04 1311 accept 0 ALIGNMENT 200 Y12-18o14.q1k chr01 305 1061 140379 141130 F 757 76.62 1361 reject_low 2 ALIGNMENT 1037 Y12-18o14.q1k chr02 33 1229 85116 86309 F 1197 96.32 1361 accept 0 ALIGNMENT 26 Y12-18o14.q1k chr04 588 553 44855 44890 C 36 94.44 1361 reject_low 5 ALIGNMENT 66 Y12-18o14.q1k chr10 949 668 381802 382078 C 282 76.24 1361 reject_low 3 ALIGNMENT 29 Y12-18o14.q1k chr04 870 818 44571 44623 C 53 84.91 1361 reject_low 5 ALIGNMENT 0 Y12-18o14.q1k chr10 62 670 520753 520752 F 609 0.00 1361 reject_low 4 ALIGNMENT 180 Y12-18o14.p1k chr05 773 1090 363093 363423 F 318 87.11 1311 reject_low 1 ALIGNMENT 0 Y12-18o14.q1k chr04 552 62 44891 44890 C 491 0.00 1361 reject_low 5 ALIGNMENT 41 Y12-18o14.q1k chr10 671 949 520753 521023 F 279 74.19 1361 reject_low 4 ALIGNMENT 0 Y12-18o14.q1k chr10 667 62 382079 382078 C 606 0.00 1361 reject_low 3 ALIGNMENT 0 Y12-18o14.q1k chr01 62 304 140379 140378 F 243 0.00 1361 reject_low 2 ALIGNMENT 0 Y12-18o14.p1k chr05 62 772 363093 363092 F 711 0.00 1311 reject_low 1 ALIGNMENT 0 Y12-18o14.q1k chr04 817 589 44624 44854 C 229 0.00 1361 reject_low 5 ALIGNMENT 628 Y12-18o15.p1k chr04 28 965 1304635 1305551 F 938 91.68 1443 accept 0 ALIGNMENT 475 Y12-18o16.p1k chr06 820 26 169496 170279 C 795 88.05 1352 accept 0 ALIGNMENT 481 Y12-18o17.q1k chr07 853 61 24940 25727 C 793 88.27 1355 accept 0 ALIGNMENT 1033 Y12-18o18.p1k chr04 1252 18 231971 233219 C 1235 95.71 1349 accept 0 ALIGNMENT 985 Y12-18o18.q1k chr04 36 1182 229002 230147 F 1147 96.51 1350 accept 0 ALIGNMENT 847 Y12-18o21.q1k chr15 1029 36 676380 677363 C 994 96.68 1253 accept 0 ALIGNMENT 918 Y12-18o21.p1k chr15 22 1118 672515 673605 F 1097 96.63 1357 accept 0 ALIGNMENT 836 Y12-18o23.q1k chr16 1005 37 578395 579347 C 969 97.11 1260 accept 0 ALIGNMENT 941 Y12-18o23.p1k chr16 20 1106 574632 575721 F 1087 96.87 1280 accept 0 ALIGNMENT 972 Y12-18p01.q1k chr12 1175 38 748337 749485 C 1138 96.05 1311 accept 0 ALIGNMENT 943 Y12-18p01.p1k chr12 22 1179 744629 745791 F 1158 94.73 1312 accept 0 ALIGNMENT 624 Y12-18p02.p1k chr02 12 822 466768 467567 F 811 94.20 1504 accept 0 ALIGNMENT 880 Y12-18p02.q1k chr02 1091 30 468848 469913 C 1062 95.48 1344 accept 0 ALIGNMENT 747 Y12-18p03.q1k chr03 31 965 108518 109445 F 935 94.87 1378 accept_chi 0 ALIGNMENT 174 Y12-18p03.p1k chr12 101 549 744695 745138 F 449 80.85 1371 accept_chi 1 ALIGNMENT 162 Y12-18p04.p1k chr12 379 998 458124 458737 F 620 76.45 1417 accept 0 ALIGNMENT 402 Y12-18p05.q1k chr05 702 28 319292 319959 C 675 88.30 1384 accept 0 ALIGNMENT 329 Y12-18p05.p1k chr05 102 783 314505 315185 F 682 83.87 1410 accept 0 ALIGNMENT 426 Y12-18p06.q1k chr06 602 39 153158 153719 C 564 93.09 1424 accept 0 ALIGNMENT 516 Y12-18p06.p1k chr06 231 964 149840 150567 F 734 91.55 1462 accept 0 ALIGNMENT 910 Y12-18p10.q1k chr12 1256 34 462498 463697 C 1223 93.38 1393 accept 0 ALIGNMENT 161 Y12-18p10.p1k chr12 697 1188 451419 451910 F 492 81.91 1445 reject_low 1 ALIGNMENT 583 Y12-18p10.p1k chr12 116 1188 459950 461047 F 1073 87.79 1445 accept 0 ALIGNMENT 0 Y12-18p10.p1k chr12 122 696 451419 451418 F 575 0.00 1445 reject_low 1 ALIGNMENT 905 Y12-18p10.q1k chr12 1251 34 453366 454560 C 1218 93.35 1393 reject_low 1 ALIGNMENT 906 Y12-18p11.q1k chr02 29 1174 331511 332670 F 1146 94.33 1364 accept 0 ALIGNMENT 538 Y12-18p14.q1k chr16 33 909 272304 273168 F 877 88.94 1499 accept 0 ALIGNMENT 333 Y12-18p14.p1k chr16 899 435 275974 276433 C 465 91.83 1552 accept 0 ALIGNMENT 670 Y12-18p15.p1k chr16 891 18 285518 286384 C 874 93.82 1441 accept 0 ALIGNMENT 51 Y12-18p15.q1k chr15 1074 903 780278 780445 C 172 79.07 1389 reject_low 1 ALIGNMENT 660 Y12-18p15.q1k chr16 33 1082 280337 281381 F 1050 88.86 1389 accept 0 ALIGNMENT 0 Y12-18p15.q1k chr15 902 62 780446 780445 C 841 0.00 1389 reject_low 1 ALIGNMENT 525 Y12-18p16.q1k chr12 252 1068 1042308 1043108 F 817 90.70 1456 accept 0 ALIGNMENT 944 Y12-18p17.q1k chr12 1140 35 697521 698611 C 1106 97.11 1366 accept 0 ALIGNMENT 733 Y12-18p17.p1k chr12 22 987 696002 696942 F 966 95.55 1447 accept 0 ALIGNMENT 663 Y12-18p18.q1k chr07 34 872 886116 886952 F 839 94.16 1368 accept 0 ALIGNMENT 627 Y12-18p19.q1k chr12 978 78 456554 457451 C 901 90.34 1380 accept 0 ALIGNMENT 627 Y12-18p19.q1k chr12 978 78 465691 466588 C 901 90.34 1380 accept 1 ALIGNMENT 517 Y12-18p23.p1k chr07 27 813 156348 157130 F 787 89.96 1396 accept 0 ALIGNMENT 836 Y12-18p23.q1k chr07 1074 34 160998 162021 C 1041 95.20 1286 accept 0 ALIGNMENT 765 Y12-19a01.p1k chr12 901 20 621775 622647 C 882 97.17 1239 accept 0 ALIGNMENT 719 Y12-19a01.q1k chr12 32 903 616771 617632 F 872 95.87 1274 accept 0 ALIGNMENT 407 Y12-19a02.p1k chr01 206 903 147747 148432 F 698 87.97 1327 accept_chi 1 ALIGNMENT 810 Y12-19a02.q1k chr13 1037 47 479157 480137 C 991 95.46 1292 accept_chi 0 ALIGNMENT 855 Y12-19a03.p1k chr11 1008 18 218190 219172 C 991 97.28 1205 accept 0 ALIGNMENT 259 Y12-19a03.q1k chr11 28 460 213492 213913 F 433 88.22 1340 accept 0 ALIGNMENT 908 Y12-19a07.q1k chr14 1165 38 468986 470101 C 1128 96.01 1240 accept 0 ALIGNMENT 884 Y12-19a07.p1k chr14 17 1048 464096 465118 F 1032 97.09 1207 accept 0 ALIGNMENT 750 Y12-19a09.q1k chr08 1035 32 105887 106887 C 1004 92.73 1258 accept 0 ALIGNMENT 97 Y12-19a09.q1k chr11 537 172 445356 445721 C 366 75.96 1258 reject_low 1 ALIGNMENT 0 Y12-19a09.q1k chr11 632 538 445357 445356 C 95 0.00 1258 reject_low 1 ALIGNMENT 492 Y12-19a09.p1k chr08 14 938 102202 103113 F 925 86.05 1251 accept 0 ALIGNMENT 0 Y12-19a09.q1k chr11 171 62 445722 445721 C 110 0.00 1258 reject_low 1 ALIGNMENT 943 Y12-19a10.p1k chr12 22 1163 657854 658985 F 1142 96.06 1196 accept 0 ALIGNMENT 1008 Y12-19a10.q1k chr12 1241 32 662081 663281 C 1210 95.95 1262 accept 0 ALIGNMENT 997 Y12-19a11.p1k chr09 20 1152 416618 417761 F 1133 97.71 1156 accept 0 ALIGNMENT 1030 Y12-19a11.q1k chr09 1217 36 420868 422060 C 1182 96.45 1219 accept 0 ALIGNMENT 822 Y12-19a12.q1k chr02 32 1058 781327 782349 F 1027 93.87 1299 accept 0 ALIGNMENT 788 Y12-19a12.p1k chr02 953 15 784739 785672 C 939 96.17 1253 accept 0 ALIGNMENT 952 Y12-19a13.p1k chr15 1113 14 396246 397341 C 1100 96.55 1159 accept 0 ALIGNMENT 986 Y12-19a13.q1k chr15 36 1174 393248 394377 F 1139 97.19 1201 accept 0 ALIGNMENT 924 Y12-19a15.q1k chr04 1165 37 396722 397867 C 1129 95.31 1179 accept 0 ALIGNMENT 960 Y12-19a15.p1k chr04 29 1118 393458 394549 F 1090 96.88 1129 accept 0 ALIGNMENT 150 Y12-19a17.q1k chr07 842 31 31563 32373 C 812 73.52 1228 accept 0 ALIGNMENT 913 Y12-19a18.q1k chr11 36 1180 637563 638718 F 1145 93.97 1193 accept 0 ALIGNMENT 929 Y12-19a18.p1k chr11 1139 30 641245 642344 C 1110 96.04 1160 accept 0 ALIGNMENT 854 Y12-19a19.q1k chr12 1138 35 457663 458775 C 1104 93.48 1138 accept 0 ALIGNMENT 918 Y12-19a19.p1k chr12 36 1059 455756 456776 F 1024 97.27 1079 accept 0 ALIGNMENT 918 Y12-19a19.p1k chr12 36 1059 464893 465913 F 1024 97.27 1079 accept 1 ALIGNMENT 854 Y12-19a19.q1k chr12 1138 35 466800 467912 C 1104 93.48 1138 accept 1 ALIGNMENT 877 Y12-19a20.p1k chr04 1036 32 888796 889793 C 1005 96.82 1123 accept 0 ALIGNMENT 486 Y12-19a20.q1k chr04 47 693 885164 885825 F 647 92.27 907 accept 0 ALIGNMENT 715 Y12-19a21.q1k chr14 36 1053 289374 290447 F 1018 89.78 1098 accept 0 ALIGNMENT 948 Y12-19a21.p1k chr14 1059 19 292895 293936 C 1041 98.17 1059 accept 0 ALIGNMENT 900 Y12-19a22.p1k chr07 31 1002 787278 788249 F 972 98.46 1119 accept 0 ALIGNMENT 883 Y12-19a22.q1k chr07 1090 34 790290 791345 C 1057 95.08 1091 accept 0 ALIGNMENT 0 Y12-19a22.p1k chr07 539 870 437940 437939 F 332 0.00 1119 reject_low 1 ALIGNMENT 361 Y12-19a22.p1k chr07 67 538 437469 437940 F 472 92.80 1119 reject_low 1 ALIGNMENT 0 Y12-19a23.q1k chr14 295 757 290060 290059 F 463 0.00 1202 reject_low 2 ALIGNMENT 85 Y12-19a23.q1k chr14 758 902 290060 290204 F 145 87.59 1202 reject_low 2 ALIGNMENT 424 Y12-19a23.q1k chr14 125 785 289378 290039 F 661 88.65 1202 accept_chi 0 ALIGNMENT 359 Y12-19a23.p1k chr02 952 148 416277 417066 C 805 83.35 1169 accept_chi 1 ALIGNMENT 536 Y12-19a24.q1k chr07 839 111 790632 791341 C 729 93.83 1344 accept 0 ALIGNMENT 913 Y12-19b02.q1k chr15 30 1122 391371 392449 F 1093 95.70 1253 accept 0 ALIGNMENT 465 Y12-19b03.p1k chr14 96 891 390865 391653 F 796 87.19 1284 accept 0 ALIGNMENT 701 Y12-19b03.q1k chr14 1023 68 394205 395155 C 956 92.36 1328 accept 0 ALIGNMENT 960 Y12-19b04.p1k chr12 1157 21 397496 398618 C 1137 97.01 1216 accept 0 ALIGNMENT 1027 Y12-19b05.q1k chr13 29 1227 15273 16465 F 1199 96.16 1228 accept 0 ALIGNMENT 831 Y12-19b05.p1k chr13 1008 20 18402 19380 C 989 96.46 1249 accept 0 ALIGNMENT 950 Y12-19b06.p1k chr02 1143 26 731376 732485 C 1118 97.05 1202 accept 0 ALIGNMENT 911 Y12-19b06.q1k chr02 30 1114 728282 729371 F 1085 96.22 1244 accept 0 ALIGNMENT 449 Y12-19b09.p1k chr07 22 809 179168 179951 F 788 86.68 1266 accept 0 ALIGNMENT 606 Y12-19b09.q1k chr07 898 8 182506 183388 C 891 90.80 1219 accept 0 ALIGNMENT 1013 Y12-19b10.q1k chr15 31 1206 338171 339356 F 1176 96.34 1234 accept 0 ALIGNMENT 937 Y12-19b10.p1k chr15 1115 14 343288 344374 C 1102 96.37 1223 accept 0 ALIGNMENT 788 Y12-19b11.q1k chr08 30 936 296298 297194 F 907 96.80 1360 accept 0 ALIGNMENT 649 Y12-19b11.p1k chr08 879 22 299305 300156 C 858 93.47 1256 accept 0 ALIGNMENT 849 Y12-19b13.p1k chr15 23 982 60518 61470 F 960 97.29 1239 accept 0 ALIGNMENT 1045 Y12-19b13.q1k chr15 1194 34 63674 64836 C 1161 97.42 1199 accept 0 ALIGNMENT 93 Y12-19b14.q1k chr04 179 333 515767 515929 F 155 87.74 901 ambiguous_trans 13 ALIGNMENT 96 Y12-19b14.q1k chr04 333 179 875530 875692 C 155 88.39 901 ambiguous_trans 8 ALIGNMENT 99 Y12-19b14.q1k chr07 179 333 570827 570989 F 155 89.03 901 ambiguous_trans 3 ALIGNMENT 96 Y12-19b14.q1k chr15 179 333 706147 706309 F 155 88.39 901 ambiguous_trans 10 ALIGNMENT 99 Y12-19b14.q1k chr06 333 179 141622 141784 C 155 89.03 901 ambiguous_trans 2 ALIGNMENT 96 Y12-19b14.q1k chr03 333 179 88524 88686 C 155 88.39 901 ambiguous_trans 7 ALIGNMENT 96 Y12-19b14.q1k chr14 179 333 564116 564278 F 155 88.39 901 ambiguous_trans 9 ALIGNMENT 0 Y12-19b14.p1k chr11 733 911 170978 170977 F 179 0.00 1176 reject_low 1 ALIGNMENT 96 Y12-19b14.q1k chr15 333 179 973996 974158 C 155 88.39 901 ambiguous_trans 11 ALIGNMENT 99 Y12-19b14.q1k chr12 333 179 944903 945065 C 155 89.03 901 ambiguous_trans 5 ALIGNMENT 243 Y12-19b14.p1k chr11 27 732 170271 170978 F 706 78.61 1176 reject_low 1 ALIGNMENT 93 Y12-19b14.q1k chr04 333 179 984879 985041 C 155 87.74 901 ambiguous_trans 14 ALIGNMENT 99 Y12-19b14.q1k chr12 179 333 977820 977982 F 155 89.03 901 ambiguous_trans 6 ALIGNMENT 99 Y12-19b14.q1k chr07 333 179 815166 815328 C 155 89.03 901 ambiguous_trans 4 ALIGNMENT 93 Y12-19b14.q1k chr02 333 179 33355 33517 C 155 87.74 901 ambiguous_trans 12 ALIGNMENT 1009 Y12-19b14.p1k chr10 1158 28 355651 356784 C 1131 96.82 1176 accept 0 ALIGNMENT 321 Y12-19b15.q1k chr04 698 268 753637 754065 C 431 90.95 1279 accept 0 ALIGNMENT 965 Y12-19b15.p1k chr04 24 1133 749257 750362 F 1110 96.67 1146 accept 0 ALIGNMENT 552 Y12-19b16.q1k chr16 33 766 350447 351197 F 734 92.51 1068 accept 0 ALIGNMENT 949 Y12-19b16.p1k chr16 1135 32 354214 355328 C 1104 96.01 1137 accept 0 ALIGNMENT 1011 Y12-19b17.p1k chr14 1133 23 740504 741619 C 1111 97.66 1135 accept 0 ALIGNMENT 25 Y12-19b18.q1k vc_1 39 15 2496 2520 C 25 100.00 1091 reject_low 3 ALIGNMENT 928 Y12-19b18.p1k chr12 23 1124 451467 452595 F 1102 95.64 1124 reject_low 1 ALIGNMENT 0 Y12-19b18.q1k vc_3 380 40 2497 2496 C 341 0.00 1091 reject_low 4 ALIGNMENT 77 Y12-19b18.q1k chr12 1035 865 464205 464386 C 171 84.80 1091 reject_bad_break 0 ALIGNMENT 506 Y12-19b18.q1k chr12 729 40 464553 465267 C 690 90.72 1091 reject_bad_break 0 ALIGNMENT 506 Y12-19b18.q1k chr12 729 40 455416 456130 C 690 90.72 1091 reject_low 1 ALIGNMENT 0 Y12-19b18.q1k vc_1 380 40 2497 2496 C 341 0.00 1091 reject_low 3 ALIGNMENT 0 Y12-19b18.q1k chr12 864 730 464387 464552 C 135 0.00 1091 reject_bad_break 0 ALIGNMENT 0 Y12-19b18.p1k chr12 62 319 489754 489753 F 258 0.00 1124 reject_low 2 ALIGNMENT 928 Y12-19b18.p1k chr12 23 1124 460604 461732 F 1102 95.64 1124 reject_bad_break 0 ALIGNMENT 682 Y12-19b18.p1k chr12 320 1105 489754 490543 F 786 96.18 1124 reject_low 2 ALIGNMENT 25 Y12-19b18.q1k vc_3 39 15 2496 2520 C 25 100.00 1091 reject_low 4 ALIGNMENT 1019 Y12-19b20.p1k chr10 1093 22 570931 572003 C 1072 98.79 1093 accept 0 ALIGNMENT 460 Y12-19b20.q1k chr10 34 620 567090 567690 F 587 93.87 988 accept 0 ALIGNMENT 947 Y12-19b22.p1k chr15 25 1066 506596 507635 F 1042 98.18 1066 accept 0 ALIGNMENT 299 Y12-19b22.q1k chr15 672 253 512179 512583 C 420 91.90 1174 accept 0 ALIGNMENT 120 Y12-19b22.p1k chr14 183 25 443413 443571 C 159 93.08 1066 reject_low 1 ALIGNMENT 0 Y12-19b22.p1k chr14 878 184 443414 443413 C 695 0.00 1066 reject_low 1 ALIGNMENT 926 Y12-19b23.p1k chr02 17 1061 739082 740121 F 1045 96.84 1061 accept 0 ALIGNMENT 894 Y12-19b23.q1k chr02 1113 31 742468 743557 C 1083 94.28 1115 accept 0 ALIGNMENT 307 Y12-19c01.p1k chr12 476 1074 1025308 1025892 F 599 86.31 1162 reject_bad_break 0 ALIGNMENT 0 Y12-19c01.p1k chr12 97 475 1024920 1025307 F 379 0.00 1162 reject_bad_break 0 ALIGNMENT 61 Y12-19c01.p1k chr12 21 96 1024844 1024919 F 76 97.37 1162 reject_bad_break 0 ALIGNMENT 356 Y12-19c01.q1k chr12 470 29 1030248 1030685 C 442 95.25 1467 reject_bad_break 0 ALIGNMENT 720 Y12-19c02.p1k chr08 1064 107 406068 407000 C 958 94.99 1235 accept 0 ALIGNMENT 409 Y12-19c02.q1k chr08 45 567 401964 402479 F 523 95.03 1514 accept 0 ALIGNMENT 947 Y12-19c03.p1k chr02 1125 21 177031 178135 C 1105 96.83 1156 accept 0 ALIGNMENT 1021 Y12-19c03.q1k chr02 25 1197 173415 174590 F 1173 96.68 1211 accept 0 ALIGNMENT 881 Y12-19c04.p1k chr04 1038 16 626600 627608 C 1023 97.36 1238 accept 0 ALIGNMENT 799 Y12-19c04.q1k chr04 62 1092 622497 623508 F 1031 94.47 1355 accept 0 ALIGNMENT 972 Y12-19c05.p1k chr10 21 1131 619686 620789 F 1111 97.57 1202 accept 0 ALIGNMENT 348 Y12-19c05.q1k chr10 675 3 620595 621261 C 673 85.14 1367 accept 0 ALIGNMENT 944 Y12-19c07.q1k chr02 1174 33 118673 119809 C 1142 95.62 1223 accept 0 ALIGNMENT 852 Y12-19c07.p1k chr02 22 1086 114445 115504 F 1065 94.74 1220 accept 0 ALIGNMENT 1040 Y12-19c08.q1k chr10 1228 18 680842 682053 C 1211 96.12 1230 accept_chi 0 ALIGNMENT 1008 Y12-19c08.p1k chr02 1209 17 521590 522776 C 1193 96.90 1213 accept_chi 1 ALIGNMENT 993 Y12-19c09.q1k chr12 1204 36 753512 754685 C 1169 96.15 1235 accept 0 ALIGNMENT 916 Y12-19c09.p1k chr12 19 1157 751369 752489 F 1139 95.79 1187 accept 0 ALIGNMENT 30 Y12-19c10.q1k chr04 961 893 1530086 1530153 C 69 81.16 1271 reject_low 203 ALIGNMENT 0 Y12-19c10.q1k chr12 880 62 1069776 1069775 C 819 0.00 1271 reject_low 178 ALIGNMENT 0 Y12-19c10.q1k chr15 881 62 1089582 1089581 C 820 0.00 1271 reject_low 82 ALIGNMENT 28 Y12-19c10.q1k chr06 881 936 1072 1127 F 56 83.93 1271 reject_low 199 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 1827 1826 F 820 0.00 1271 reject_low 32 ALIGNMENT 0 Y12-19c10.q1k chr14 62 881 1754 1753 F 820 0.00 1271 reject_low 68 ALIGNMENT 36 Y12-19c10.q1k chr04 946 881 1530172 1530237 C 66 84.85 1271 reject_low 177 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946099 946098 C 820 0.00 1271 reject_low 152 ALIGNMENT 998 Y12-19c10.p1k chr05 1186 21 2568 3732 C 1166 95.71 1193 ambiguous_tel 2 ALIGNMENT 0 Y12-19c10.q1k chr08 62 892 1806 1805 F 831 0.00 1271 reject_low 183 ALIGNMENT 0 Y12-19c10.q1k chr09 62 892 1949 1948 F 831 0.00 1271 reject_low 143 ALIGNMENT 39 Y12-19c10.q1k chr05 929 1057 1481 1605 F 129 78.29 1271 reject_low 166 ALIGNMENT 0 Y12-19c10.q1k chr12 880 62 1076331 1076330 C 819 0.00 1271 reject_low 193 ALIGNMENT 0 Y12-19c10.q1k chr04 884 62 1530378 1530377 C 823 0.00 1271 reject_low 43 ALIGNMENT 0 Y12-19c10.q1k chr12 884 62 1076579 1076578 C 823 0.00 1271 reject_low 46 ALIGNMENT 0 Y12-19c10.q1k chr12 880 62 1069668 1069667 C 819 0.00 1271 reject_low 192 ALIGNMENT 0 Y12-19c10.q1k chr06 62 920 896 895 F 859 0.00 1271 reject_low 121 ALIGNMENT 0 Y12-19c10.q1k chr15 880 62 1089403 1089402 C 819 0.00 1271 reject_low 180 ALIGNMENT 32 Y12-19c10.q1k chr12 929 1054 1694 1815 F 126 76.98 1271 reject_low 184 ALIGNMENT 30 Y12-19c10.q1k chr12 881 946 7685 7750 F 66 81.82 1271 reject_low 191 ALIGNMENT 0 Y12-19c10.q1k chr08 884 62 560731 560730 C 823 0.00 1271 reject_low 141 ALIGNMENT 90 Y12-19c10.q1k chr15 1080 882 1089279 1089473 C 199 83.42 1271 reject_low 69 ALIGNMENT 884 Y12-19c10.q1k chr12 1057 36 1069855 1070872 C 1022 95.89 1271 ambiguous_tel 7 ALIGNMENT 37 Y12-19c10.q1k chr08 882 946 1759 1823 F 65 86.15 1271 reject_low 181 ALIGNMENT 30 Y12-19c10.q1k chr15 946 881 1089229 1089294 C 66 81.82 1271 reject_low 196 ALIGNMENT 64 Y12-19c10.q1k chr10 882 1054 1705 1873 F 173 80.92 1271 reject_low 116 ALIGNMENT 90 Y12-19c10.q1k chr02 882 1104 1630 1847 F 223 82.06 1271 reject_low 31 ALIGNMENT 50 Y12-19c10.q1k chr06 1004 1080 905 979 F 77 90.91 1271 reject_low 110 ALIGNMENT 73 Y12-19c10.q1k chr09 882 1054 2046 2214 F 173 82.66 1271 reject_low 108 ALIGNMENT 44 Y12-19c10.q1k chr02 882 994 2278 2389 F 113 80.53 1271 reject_low 153 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1076510 1076509 C 820 0.00 1271 reject_low 66 ALIGNMENT 0 Y12-19c10.q1k chr15 892 62 1089427 1089426 C 831 0.00 1271 reject_low 138 ALIGNMENT 0 Y12-19c10.q1k chr09 62 892 2165 2164 F 831 0.00 1271 reject_low 231 ALIGNMENT 0 Y12-19c10.q1k chr10 62 892 1932 1931 F 831 0.00 1271 reject_low 144 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 1558 1557 F 820 0.00 1271 reject_low 165 ALIGNMENT 0 Y12-19c10.q1k chr12 62 928 1694 1693 F 867 0.00 1271 reject_low 184 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946207 946206 C 820 0.00 1271 reject_low 71 ALIGNMENT 0 Y12-19c10.q1k chr12 62 884 1938 1937 F 823 0.00 1271 reject_low 90 ALIGNMENT 992 Y12-19c10.p1k chr16 1186 21 2413 3577 C 1166 95.54 1193 ambiguous_tel 5 ALIGNMENT 878 Y12-19c10.q1k chr12 36 1057 6480 7497 F 1022 95.69 1271 reject_low 16 ALIGNMENT 0 Y12-19c10.q1k chr12 62 957 1686 1685 F 896 0.00 1271 reject_low 222 ALIGNMENT 55 Y12-19c10.q1k chr05 882 1057 1506 1677 F 176 78.41 1271 reject_low 139 ALIGNMENT 73 Y12-19c10.q1k chr14 885 1104 1685 1899 F 220 79.09 1271 reject_low 55 ALIGNMENT 90 Y12-19c10.q1k chr12 882 1080 1971 2165 F 199 83.42 1271 reject_low 63 ALIGNMENT 0 Y12-19c10.q1k chr09 62 892 2021 2020 F 831 0.00 1271 reject_low 73 ALIGNMENT 0 Y12-19c10.q1k chr15 881 62 1089618 1089617 C 820 0.00 1271 reject_low 29 ALIGNMENT 30 Y12-19c10.q1k chr12 946 881 1076265 1076330 C 66 81.82 1271 reject_low 193 ALIGNMENT 0 Y12-19c10.q1k chr12 62 884 7473 7472 F 823 0.00 1271 reject_low 91 ALIGNMENT 67 Y12-19c10.q1k chr02 882 1080 2026 2220 F 199 79.90 1271 reject_low 105 ALIGNMENT 0 Y12-19c10.q1k chr09 995 1020 2230 2324 F 26 0.00 1271 reject_low 225 ALIGNMENT 0 Y12-19c10.q1k chr13 62 880 2026 2025 F 819 0.00 1271 reject_low 194 ALIGNMENT 103 Y12-19c10.q1k chr08 1080 882 560467 560661 C 199 85.93 1271 reject_low 41 ALIGNMENT 0 Y12-19c10.q1k chr07 881 62 1089215 1089214 C 820 0.00 1271 reject_low 62 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 1741 1740 F 820 0.00 1271 reject_low 35 ALIGNMENT 94 Y12-19c10.q1k chr05 882 1054 1650 1818 F 173 86.71 1271 reject_low 86 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 1830 1829 F 820 0.00 1271 reject_low 100 ALIGNMENT 0 Y12-19c10.q1k chr07 881 62 1089323 1089322 C 820 0.00 1271 reject_low 76 ALIGNMENT 60 Y12-19c10.q1k chr05 1104 885 574956 575170 C 220 77.27 1271 reject_low 88 ALIGNMENT 90 Y12-19c10.q1k chr05 1080 882 574943 575137 C 199 83.42 1271 reject_low 61 ALIGNMENT 50 Y12-19c10.q1k chr09 882 994 2118 2229 F 113 82.30 1271 reject_low 225 ALIGNMENT 48 Y12-19c10.q1k chr10 893 1054 1932 2089 F 162 77.78 1271 reject_low 144 ALIGNMENT 0 Y12-19c10.q1k chr04 881 62 1530309 1530308 C 820 0.00 1271 reject_low 60 ALIGNMENT 897 Y12-19c10.q1k chr10 36 1054 823 1837 F 1019 96.47 1271 ambiguous_tel 0 ALIGNMENT 27 Y12-19c10.q1k chr08 958 1054 1654 1747 F 97 78.35 1271 reject_low 216 ALIGNMENT 24 Y12-19c10.q1k chr12 958 1054 1686 1779 F 97 77.32 1271 reject_low 222 ALIGNMENT 73 Y12-19c10.q1k chr07 1104 885 1089069 1089283 C 220 79.09 1271 reject_low 52 ALIGNMENT 0 Y12-19c10.q1k chr12 62 892 1874 1873 F 831 0.00 1271 reject_low 49 ALIGNMENT 0 Y12-19c10.q1k chr07 881 62 1089359 1089358 C 820 0.00 1271 reject_low 23 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 2242 2241 F 820 0.00 1271 reject_low 162 ALIGNMENT 69 Y12-19c10.q1k chr02 893 1054 2217 2374 F 162 82.72 1271 reject_low 111 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 1522 1521 F 820 0.00 1271 reject_low 96 ALIGNMENT 42 Y12-19c10.q1k chr05 882 1054 1578 1746 F 173 76.30 1271 reject_low 161 ALIGNMENT 90 Y12-19c10.q1k chr16 1080 882 946012 946206 C 199 83.42 1271 reject_low 71 ALIGNMENT 0 Y12-19c10.q1k chr07 892 62 1089060 1089059 C 831 0.00 1271 reject_low 206 ALIGNMENT 30 Y12-19c10.q1k chr14 893 961 1909 1976 F 69 81.16 1271 reject_low 212 ALIGNMENT 0 Y12-19c10.q1k chr16 62 880 1842 1841 F 819 0.00 1271 reject_low 197 ALIGNMENT 0 Y12-19c10.q1k chr02 62 880 1845 1844 F 819 0.00 1271 reject_low 186 ALIGNMENT 39 Y12-19c10.q1k chr07 946 881 1089078 1089143 C 66 86.36 1271 reject_low 168 ALIGNMENT 0 Y12-19c10.q1k chr16 884 62 946240 946239 C 823 0.00 1271 reject_low 95 ALIGNMENT 49 Y12-19c10.q1k chr02 882 1054 2098 2266 F 173 78.03 1271 reject_low 140 ALIGNMENT 73 Y12-19c10.q1k chr13 885 1104 1778 1992 F 220 79.09 1271 reject_low 54 ALIGNMENT 39 Y12-19c10.q1k chr12 881 946 2042 2107 F 66 86.36 1271 reject_low 169 ALIGNMENT 900 Y12-19c10.q1k chr05 36 1057 624 1641 F 1022 96.48 1271 ambiguous_tel 2 ALIGNMENT 57 Y12-19c10.q1k chr08 882 1054 1723 1891 F 173 79.19 1271 reject_low 134 ALIGNMENT 0 Y12-19c10.q1k chr05 881 62 575138 575137 C 820 0.00 1271 reject_low 61 ALIGNMENT 47 Y12-19c10.q1k chr02 877 1080 1769 1968 F 204 75.98 1271 reject_low 131 ALIGNMENT 47 Y12-19c10.q1k chr14 882 994 1862 1973 F 113 81.42 1271 reject_low 150 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1722 1721 F 820 0.00 1271 reject_low 59 ALIGNMENT 36 Y12-19c10.q1k chr12 946 881 1069710 1069775 C 66 84.85 1271 reject_low 178 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 1705 1704 F 820 0.00 1271 reject_low 116 ALIGNMENT 60 Y12-19c10.q1k chr14 885 1104 1721 1935 F 220 77.27 1271 reject_low 93 ALIGNMENT 27 Y12-19c10.q1k chr05 958 1057 1473 1569 F 100 78.00 1271 reject_low 202 ALIGNMENT 0 Y12-19c10.q1k chr14 62 880 1933 1932 F 819 0.00 1271 reject_low 195 ALIGNMENT 84 Y12-19c10.q1k chr16 1104 882 946133 946350 C 223 81.17 1271 reject_low 33 ALIGNMENT 32 Y12-19c10.q1k chr16 1054 929 946362 946483 C 126 76.98 1271 reject_low 185 ALIGNMENT 30 Y12-19c10.q1k chr05 961 893 574915 574982 C 69 81.16 1271 reject_low 204 ALIGNMENT 0 Y12-19c10.q1k chr06 62 892 976 975 F 831 0.00 1271 reject_low 182 ALIGNMENT 0 Y12-19c10.q1k chr04 881 62 1530453 1530452 C 820 0.00 1271 reject_low 21 ALIGNMENT 76 Y12-19c10.q1k chr02 885 1080 1705 1896 F 196 81.63 1271 reject_low 97 ALIGNMENT 74 Y12-19c10.q1k chr05 882 1104 1686 1903 F 223 79.37 1271 reject_low 48 ALIGNMENT 21 Y12-19c10.q1k chr09 1021 1054 2325 2358 F 34 85.29 1271 reject_low 225,226,229,231 ALIGNMENT 68 Y12-19c10.q1k chr09 882 1080 1830 2024 F 199 79.90 1271 reject_low 100 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 1974 1973 F 820 0.00 1271 reject_low 20 ALIGNMENT 60 Y12-19c10.q1k chr16 893 1054 1710 1867 F 162 80.86 1271 reject_low 129 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 1777 1776 F 820 0.00 1271 reject_low 38 ALIGNMENT 93 Y12-19c10.q1k chr14 882 1104 1610 1827 F 223 82.51 1271 reject_low 28 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1076402 1076401 C 820 0.00 1271 reject_low 157 ALIGNMENT 0 Y12-19c10.q1k chr06 62 880 1072 1071 F 819 0.00 1271 reject_low 199 ALIGNMENT 0 Y12-19c10.q1k chr16 62 884 1630 1629 F 823 0.00 1271 reject_low 94 ALIGNMENT 1028 Y12-19c10.p1k chr10 1186 21 2875 4039 C 1166 96.57 1193 ambiguous_tel 0 ALIGNMENT 0 Y12-19c10.q1k chr04 880 62 1530238 1530237 C 819 0.00 1271 reject_low 177 ALIGNMENT 76 Y12-19c10.q1k chr12 882 1054 1719 1887 F 173 83.24 1271 reject_low 103 ALIGNMENT 30 Y12-19c10.q1k chr05 893 961 1877 1944 F 69 81.16 1271 reject_low 230 ALIGNMENT 67 Y12-19c10.q1k chr08 929 1104 1662 1832 F 176 81.25 1271 reject_low 57 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 1722 1721 F 820 0.00 1271 reject_low 115 ALIGNMENT 884 Y12-19c10.q1k chr15 1057 36 1089482 1090499 C 1022 95.89 1271 ambiguous_tel 9 ALIGNMENT 88 Y12-19c10.q1k chr13 882 1080 1739 1933 F 199 83.42 1271 reject_low 80 ALIGNMENT 950 Y12-19c10.p1k chr16 70 1186 944342 945456 F 1117 95.52 1193 reject_low 12 ALIGNMENT 30 Y12-19c10.q1k chr16 881 946 1842 1907 F 66 81.82 1271 reject_low 197 ALIGNMENT 0 Y12-19c10.q1k chr08 892 62 560507 560506 C 831 0.00 1271 reject_low 219 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1076654 1076653 C 820 0.00 1271 reject_low 26 ALIGNMENT 30 Y12-19c10.q1k chr07 961 893 1088992 1089059 C 69 81.16 1271 reject_low 206 ALIGNMENT 39 Y12-19c10.q1k chr16 881 946 1734 1799 F 66 86.36 1271 reject_low 173 ALIGNMENT 878 Y12-19c10.q1k chr08 1057 36 560670 561687 C 1022 95.69 1271 reject_low 18 ALIGNMENT 28 Y12-19c10.q1k chr09 881 936 2189 2244 F 56 83.93 1271 reject_low 229 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 1791 1790 F 820 0.00 1271 reject_low 132 ALIGNMENT 60 Y12-19c10.q1k chr12 893 1054 7553 7710 F 162 80.86 1271 reject_low 126 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946459 946458 C 820 0.00 1271 reject_low 104 ALIGNMENT 897 Y12-19c10.q1k chr09 36 1054 840 1854 F 1019 96.47 1271 ambiguous_tel 1 ALIGNMENT 28 Y12-19c10.q1k chr08 881 936 1866 1921 F 56 83.93 1271 reject_low 200 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 1719 1718 F 820 0.00 1271 reject_low 103 ALIGNMENT 24 Y12-19c10.q1k chr16 1054 958 946398 946491 C 97 77.32 1271 reject_low 223 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 1630 1629 F 820 0.00 1271 reject_low 31 ALIGNMENT 0 Y12-19c10.q1k chr02 62 884 1597 1596 F 823 0.00 1271 reject_low 106 ALIGNMENT 44 Y12-19c10.q1k chr04 994 882 1530089 1530200 C 113 80.53 1271 reject_low 154 ALIGNMENT 0 Y12-19c10.q1k chr10 62 892 2004 2003 F 831 0.00 1271 reject_low 176 ALIGNMENT 94 Y12-19c10.q1k chr05 882 1080 1614 1808 F 199 84.42 1271 reject_low 58 ALIGNMENT 0 Y12-19c10.q1k chr05 884 62 575171 575170 C 823 0.00 1271 reject_low 88 ALIGNMENT 0 Y12-19c10.q1k chr04 892 62 1530262 1530261 C 831 0.00 1271 reject_low 135 ALIGNMENT 30 Y12-19c10.q1k chr09 893 961 2165 2232 F 69 81.16 1271 reject_low 231 ALIGNMENT 0 Y12-19c10.q1k chr15 880 62 1089295 1089294 C 819 0.00 1271 reject_low 196 ALIGNMENT 0 Y12-19c10.q1k chr08 62 928 1662 1661 F 867 0.00 1271 reject_low 57 ALIGNMENT 93 Y12-19c10.q1k chr05 882 1080 1722 1916 F 199 83.92 1271 reject_low 59 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 2217 2216 F 831 0.00 1271 reject_low 111 ALIGNMENT 36 Y12-19c10.q1k chr05 893 946 1805 1858 F 54 88.89 1271 reject_low 227 ALIGNMENT 90 Y12-19c10.q1k chr12 1080 882 1076315 1076509 C 199 83.42 1271 reject_low 66 ALIGNMENT 0 Y12-19c10.q1k chr16 892 62 946304 946303 C 831 0.00 1271 reject_low 50 ALIGNMENT 0 Y12-19c10.q1k chr08 881 62 560554 560553 C 820 0.00 1271 reject_low 155 ALIGNMENT 0 Y12-19c10.q1k chr12 892 62 1076463 1076462 C 831 0.00 1271 reject_low 137 ALIGNMENT 0 Y12-19c10.q1k chr16 62 881 1771 1770 F 820 0.00 1271 reject_low 151 ALIGNMENT 39 Y12-19c10.q1k chr14 881 946 1825 1890 F 66 86.36 1271 reject_low 172 ALIGNMENT 21 Y12-19c10.q1k chr05 1021 1054 2001 2034 F 34 85.29 1271 reject_low 224,227,228,230 ALIGNMENT 57 Y12-19c10.q1k chr04 1054 893 1530104 1530261 C 162 80.25 1271 reject_low 135 ALIGNMENT 0 Y12-19c10.q1k chr16 62 881 1519 1518 F 820 0.00 1271 reject_low 30 ALIGNMENT 0 Y12-19c10.q1k chr05 892 62 574983 574982 C 831 0.00 1271 reject_low 204 ALIGNMENT 88 Y12-19c10.q1k chr16 882 1080 1555 1749 F 199 83.42 1271 reject_low 83 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1614 1613 F 820 0.00 1271 reject_low 58 ALIGNMENT 0 Y12-19c10.q1k chr16 62 892 1710 1709 F 831 0.00 1271 reject_low 129 ALIGNMENT 30 Y12-19c10.q1k chr05 946 881 574893 574958 C 66 81.82 1271 reject_low 188 ALIGNMENT 30 Y12-19c10.q1k chr12 893 961 2126 2193 F 69 81.16 1271 reject_low 207 ALIGNMENT 0 Y12-19c10.q1k chr12 62 884 1902 1901 F 823 0.00 1271 reject_low 44 ALIGNMENT 57 Y12-19c10.q1k chr15 1054 893 1089269 1089426 C 162 80.25 1271 reject_low 138 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 1813 1812 F 820 0.00 1271 reject_low 101 ALIGNMENT 0 Y12-19c10.q1k chr12 892 62 1069692 1069691 C 831 0.00 1271 reject_low 209 ALIGNMENT 60 Y12-19c10.q1k chr12 885 1104 7473 7687 F 220 77.27 1271 reject_low 91 ALIGNMENT 0 Y12-19c10.q1k chr05 884 62 575207 575206 C 823 0.00 1271 reject_low 51 ALIGNMENT 44 Y12-19c10.q1k chr12 994 882 1076290 1076401 C 113 80.53 1271 reject_low 157 ALIGNMENT 93 Y12-19c10.q1k chr07 1104 882 1089141 1089358 C 223 82.51 1271 reject_low 23 ALIGNMENT 0 Y12-19c10.q1k chr13 62 881 1955 1954 F 820 0.00 1271 reject_low 149 ALIGNMENT 0 Y12-19c10.q1k chr08 62 880 1866 1865 F 819 0.00 1271 reject_low 200 ALIGNMENT 28 Y12-19c10.q1k chr05 881 936 1901 1956 F 56 83.93 1271 reject_low 228 ALIGNMENT 90 Y12-19c10.q1k chr09 893 1080 2021 2204 F 188 84.57 1271 reject_low 73 ALIGNMENT 0 Y12-19c10.q1k chr14 62 892 1801 1800 F 831 0.00 1271 reject_low 128 ALIGNMENT 0 Y12-19c10.q1k chr06 62 881 1001 1000 F 820 0.00 1271 reject_low 142 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 2170 2169 F 820 0.00 1271 reject_low 40 ALIGNMENT 36 Y12-19c10.q1k chr15 946 881 1089337 1089402 C 66 84.85 1271 reject_low 180 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1650 1649 F 820 0.00 1271 reject_low 86 ALIGNMENT 103 Y12-19c10.q1k chr02 882 1080 2170 2364 F 199 85.93 1271 reject_low 40 ALIGNMENT 90 Y12-19c10.q1k chr12 882 1080 7506 7700 F 199 83.42 1271 reject_low 64 ALIGNMENT 0 Y12-19c10.q1k chr07 880 62 1089036 1089035 C 819 0.00 1271 reject_low 189 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 1758 1757 F 820 0.00 1271 reject_low 34 ALIGNMENT 30 Y12-19c10.q1k chr13 881 946 2026 2091 F 66 81.82 1271 reject_low 194 ALIGNMENT 62 Y12-19c10.q1k chr02 881 1080 1953 2148 F 200 79.00 1271 reject_low 109 ALIGNMENT 55 Y12-19c10.q1k chr02 881 1080 1881 2076 F 200 77.50 1271 reject_low 118 ALIGNMENT 30 Y12-19c10.q1k chr12 881 946 2150 2215 F 66 81.82 1271 reject_low 190 ALIGNMENT 0 Y12-19c10.q1k chr05 995 1020 1942 2000 F 26 0.00 1271 reject_low 224 ALIGNMENT 60 Y12-19c10.q1k chr07 1104 885 1089033 1089247 C 220 77.27 1271 reject_low 89 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 7506 7505 F 820 0.00 1271 reject_low 64 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 1821 1820 F 831 0.00 1271 reject_low 133 ALIGNMENT 0 Y12-19c10.q1k chr14 62 880 1825 1824 F 819 0.00 1271 reject_low 172 ALIGNMENT 40 Y12-19c10.q1k chr10 893 986 2004 2096 F 94 81.91 1271 reject_low 176 ALIGNMENT 946 Y12-19c10.p1k chr02 1186 70 2921 4036 C 1117 95.43 1193 reject_low 15 ALIGNMENT 0 Y12-19c10.q1k chr13 62 881 1703 1702 F 820 0.00 1271 reject_low 27 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 1971 1970 F 820 0.00 1271 reject_low 63 ALIGNMENT 0 Y12-19c10.q1k chr05 881 62 575246 575245 C 820 0.00 1271 reject_low 75 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1069991 1069990 C 820 0.00 1271 reject_low 25 ALIGNMENT 0 Y12-19c10.q1k chr12 62 880 7577 7576 F 819 0.00 1271 reject_low 170 ALIGNMENT 96 Y12-19c10.q1k chr12 893 1080 1874 2057 F 188 85.64 1271 reject_low 49 ALIGNMENT 60 Y12-19c10.q1k chr07 1054 893 1089010 1089167 C 162 80.86 1271 reject_low 124 ALIGNMENT 59 Y12-19c10.q1k chr02 893 1054 1821 1978 F 162 80.25 1271 reject_low 133 ALIGNMENT 119 Y12-19c10.q1k chr10 882 1057 1777 1948 F 176 90.91 1271 reject_low 38 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 2098 2097 F 820 0.00 1271 reject_low 140 ALIGNMENT 76 Y12-19c10.q1k chr12 885 1104 1902 2116 F 220 79.55 1271 reject_low 44 ALIGNMENT 41 Y12-19c10.q1k chr02 882 984 1558 1659 F 103 81.55 1271 reject_low 165 ALIGNMENT 90 Y12-19c10.q1k chr07 1080 882 1089020 1089214 C 199 83.42 1271 reject_low 62 ALIGNMENT 0 Y12-19c10.q1k chr08 881 62 560590 560589 C 820 0.00 1271 reject_low 163 ALIGNMENT 60 Y12-19c10.q1k chr16 1054 893 946002 946159 C 162 80.86 1271 reject_low 130 ALIGNMENT 0 Y12-19c10.q1k chr07 892 62 1089168 1089167 C 831 0.00 1271 reject_low 124 ALIGNMENT 0 Y12-19c10.q1k chr16 62 880 1734 1733 F 819 0.00 1271 reject_low 173 ALIGNMENT 60 Y12-19c10.q1k chr13 885 1104 1814 2028 F 220 77.27 1271 reject_low 92 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 2361 2360 F 831 0.00 1271 reject_low 220 ALIGNMENT 93 Y12-19c10.q1k chr05 1104 882 575064 575281 C 223 82.51 1271 reject_low 22 ALIGNMENT 881 Y12-19c10.q1k chr05 1057 36 575146 576163 C 1022 95.79 1271 ambiguous_tel 3 ALIGNMENT 0 Y12-19c10.q1k chr12 62 892 7661 7660 F 831 0.00 1271 reject_low 208 ALIGNMENT 0 Y12-19c10.q1k chr12 892 62 1069800 1069799 C 831 0.00 1271 reject_low 136 ALIGNMENT 0 Y12-19c10.q1k chr06 62 1003 905 904 F 942 0.00 1271 reject_low 110 ALIGNMENT 30 Y12-19c10.q1k chr07 946 881 1088970 1089035 C 66 81.82 1271 reject_low 189 ALIGNMENT 30 Y12-19c10.q1k chr13 893 961 2002 2069 F 69 81.16 1271 reject_low 211 ALIGNMENT 0 Y12-19c10.q1k chr04 881 62 1530201 1530200 C 820 0.00 1271 reject_low 154 ALIGNMENT 881 Y12-19c10.q1k chr07 1057 36 1089223 1090240 C 1022 95.79 1271 ambiguous_tel 4 ALIGNMENT 881 Y12-19c10.q1k chr16 36 1057 637 1654 F 1022 95.79 1271 ambiguous_tel 5 ALIGNMENT 0 Y12-19c10.q1k chr05 892 62 575091 575090 C 831 0.00 1271 reject_low 123 ALIGNMENT 0 Y12-19c10.q1k chr08 62 892 1842 1841 F 831 0.00 1271 reject_low 218 ALIGNMENT 30 Y12-19c10.q1k chr15 961 893 1089251 1089318 C 69 81.16 1271 reject_low 213 ALIGNMENT 0 Y12-19c10.q1k chr08 881 62 560806 560805 C 820 0.00 1271 reject_low 85 ALIGNMENT 88 Y12-19c10.q1k chr12 1080 882 1069760 1069954 C 199 83.42 1271 reject_low 78 ALIGNMENT 0 Y12-19c10.q1k chr08 884 62 560695 560694 C 823 0.00 1271 reject_low 39 ALIGNMENT 0 Y12-19c10.q1k chr16 957 62 946492 946491 C 896 0.00 1271 reject_low 223 ALIGNMENT 0 Y12-19c10.q1k chr16 880 62 946028 946027 C 819 0.00 1271 reject_low 198 ALIGNMENT 92 Y12-19c10.q1k chr09 882 1094 1758 1965 F 213 83.10 1271 reject_low 34 ALIGNMENT 992 Y12-19c10.p1k chr07 21 1186 1087300 1088464 F 1166 95.54 1193 ambiguous_tel 4 ALIGNMENT 0 Y12-19c10.q1k chr12 62 884 7437 7436 F 823 0.00 1271 reject_low 53 ALIGNMENT 73 Y12-19c10.q1k chr16 885 1104 1594 1808 F 220 79.09 1271 reject_low 56 ALIGNMENT 30 Y12-19c10.q1k chr12 961 893 1069624 1069691 C 69 81.16 1271 reject_low 209 ALIGNMENT 81 Y12-19c10.q1k chr08 1104 885 560480 560694 C 220 80.45 1271 reject_low 39 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1542 1541 F 820 0.00 1271 reject_low 113 ALIGNMENT 96 Y12-19c10.q1k chr16 1080 893 946120 946303 C 188 85.64 1271 reject_low 50 ALIGNMENT 27 Y12-19c10.q1k chr02 893 961 2325 2392 F 69 79.71 1271 reject_low 217 ALIGNMENT 947 Y12-19c10.p1k chr13 1186 70 2597 3711 C 1117 95.43 1193 reject_low 17 ALIGNMENT 34 Y12-19c10.q1k chr08 893 994 1806 1906 F 102 78.43 1271 reject_low 183 ALIGNMENT 0 Y12-19c10.q1k chr09 62 880 2189 2188 F 819 0.00 1271 reject_low 229 ALIGNMENT 46 Y12-19c10.q1k chr09 882 946 2082 2146 F 65 90.77 1271 reject_low 226 ALIGNMENT 0 Y12-19c10.q1k chr05 881 62 575282 575281 C 820 0.00 1271 reject_low 22 ALIGNMENT 47 Y12-19c10.q1k chr16 994 882 945987 946098 C 113 81.42 1271 reject_low 152 ALIGNMENT 0 Y12-19c10.q1k chr12 62 880 7685 7684 F 819 0.00 1271 reject_low 191 ALIGNMENT 92 Y12-19c10.q1k chr10 882 1094 1741 1948 F 213 83.10 1271 reject_low 35 ALIGNMENT 39 Y12-19c10.q1k chr12 881 946 7577 7642 F 66 86.36 1271 reject_low 170 ALIGNMENT 923 Y12-19c10.q1k chr12 36 1080 837 1877 F 1045 96.65 1271 reject_low 13 ALIGNMENT 61 Y12-19c10.q1k chr16 1057 882 946215 946386 C 176 79.55 1271 reject_low 119 ALIGNMENT 79 Y12-19c10.q1k chr08 882 1080 1687 1881 F 199 81.91 1271 reject_low 87 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 2026 2025 F 820 0.00 1271 reject_low 105 ALIGNMENT 0 Y12-19c10.q1k chr05 62 880 1901 1900 F 819 0.00 1271 reject_low 228 ALIGNMENT 73 Y12-19c10.q1k chr05 1104 885 574992 575206 C 220 79.09 1271 reject_low 51 ALIGNMENT 946 Y12-19c10.p1k chr08 70 1186 558795 559910 F 1117 95.43 1193 reject_low 18 ALIGNMENT 0 Y12-19c10.q1k chr05 62 957 1473 1472 F 896 0.00 1271 reject_low 202 ALIGNMENT 30 Y12-19c10.q1k chr14 881 946 1933 1998 F 66 81.82 1271 reject_low 195 ALIGNMENT 0 Y12-19c10.q1k chr04 880 62 1530130 1530129 C 819 0.00 1271 reject_low 187 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 1738 1737 F 820 0.00 1271 reject_low 117 ALIGNMENT 88 Y12-19c10.q1k chr15 1080 882 1089387 1089581 C 199 83.42 1271 reject_low 82 ALIGNMENT 0 Y12-19c10.q1k chr06 62 892 1048 1047 F 831 0.00 1271 reject_low 205 ALIGNMENT 0 Y12-19c10.q1k chr16 880 62 946136 946135 C 819 0.00 1271 reject_low 174 ALIGNMENT 0 Y12-19c10.q1k chr13 62 884 1814 1813 F 823 0.00 1271 reject_low 92 ALIGNMENT 39 Y12-19c10.q1k chr13 881 946 1918 1983 F 66 86.36 1271 reject_low 171 ALIGNMENT 57 Y12-19c10.q1k chr12 1054 893 1076305 1076462 C 162 80.25 1271 reject_low 137 ALIGNMENT 0 Y12-19c10.q1k chr08 881 62 560662 560661 C 820 0.00 1271 reject_low 41 ALIGNMENT 93 Y12-19c10.q1k chr12 1104 882 1076436 1076653 C 223 82.51 1271 reject_low 26 ALIGNMENT 0 Y12-19c10.q1k chr13 62 892 2002 2001 F 831 0.00 1271 reject_low 211 ALIGNMENT 0 Y12-19c10.q1k chr10 62 928 1680 1679 F 867 0.00 1271 reject_low 160 ALIGNMENT 47 Y12-19c10.q1k chr07 994 882 1088995 1089106 C 113 81.42 1271 reject_low 146 ALIGNMENT 27 Y12-19c10.q1k chr08 893 961 1842 1909 F 69 79.71 1271 reject_low 218 ALIGNMENT 0 Y12-19c10.q1k chr14 62 881 1610 1609 F 820 0.00 1271 reject_low 28 ALIGNMENT 60 Y12-19c10.q1k chr13 893 1054 1894 2051 F 162 80.86 1271 reject_low 127 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 2145 2144 F 831 0.00 1271 reject_low 36 ALIGNMENT 88 Y12-19c10.q1k chr12 1080 882 1076423 1076617 C 199 83.42 1271 reject_low 79 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 2278 2277 F 820 0.00 1271 reject_low 153 ALIGNMENT 44 Y12-19c10.q1k chr12 994 882 1069627 1069738 C 113 80.53 1271 reject_low 156 ALIGNMENT 0 Y12-19c10.q1k chr07 880 62 1089144 1089143 C 819 0.00 1271 reject_low 168 ALIGNMENT 0 Y12-19c10.q1k chr15 884 62 1089543 1089542 C 823 0.00 1271 reject_low 47 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 2046 2045 F 820 0.00 1271 reject_low 108 ALIGNMENT 88 Y12-19c10.q1k chr07 1080 882 1089128 1089322 C 199 83.42 1271 reject_low 76 ALIGNMENT 60 Y12-19c10.q1k chr05 1054 893 574933 575090 C 162 80.86 1271 reject_low 123 ALIGNMENT 82 Y12-19c10.q1k chr02 893 1104 2145 2351 F 212 81.13 1271 reject_low 36 ALIGNMENT 0 Y12-19c10.q1k chr13 62 880 1918 1917 F 819 0.00 1271 reject_low 171 ALIGNMENT 50 Y12-19c10.q1k chr06 882 994 1001 1112 F 113 82.30 1271 reject_low 142 ALIGNMENT 96 Y12-19c10.q1k chr09 882 1104 1974 2191 F 223 82.96 1271 reject_low 20 ALIGNMENT 875 Y12-19c10.q1k chr14 36 1057 728 1745 F 1022 95.60 1271 ambiguous_tel 10 ALIGNMENT 989 Y12-19c10.p1k chr15 21 1186 1087559 1088723 F 1166 95.45 1193 ambiguous_tel 9 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 2325 2324 F 831 0.00 1271 reject_low 217 ALIGNMENT 39 Y12-19c10.q1k chr05 946 881 575001 575066 C 66 86.36 1271 reject_low 167 ALIGNMENT 0 Y12-19c10.q1k chr05 881 62 575030 575029 C 820 0.00 1271 reject_low 145 ALIGNMENT 116 Y12-19c10.q1k chr02 893 1104 1677 1883 F 212 86.79 1271 reject_low 19 ALIGNMENT 47 Y12-19c10.q1k chr12 882 994 7614 7725 F 113 81.42 1271 reject_low 148 ALIGNMENT 0 Y12-19c10.q1k chr08 881 62 560770 560769 C 820 0.00 1271 reject_low 102 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 2073 2072 F 831 0.00 1271 reject_low 107 ALIGNMENT 992 Y12-19c10.p1k chr05 21 1186 573223 574387 F 1166 95.54 1193 ambiguous_tel 3 ALIGNMENT 65 Y12-19c10.q1k chr02 882 1104 1918 2135 F 223 77.58 1271 reject_low 84 ALIGNMENT 50 Y12-19c10.q1k chr05 882 994 1830 1941 F 113 82.30 1271 reject_low 224 ALIGNMENT 90 Y12-19c10.q1k chr14 882 1080 1754 1948 F 199 83.42 1271 reject_low 68 ALIGNMENT 47 Y12-19c10.q1k chr05 994 882 574918 575029 C 113 81.42 1271 reject_low 145 ALIGNMENT 0 Y12-19c10.q1k chr13 62 892 1894 1893 F 831 0.00 1271 reject_low 127 ALIGNMENT 30 Y12-19c10.q1k chr04 946 881 1530064 1530129 C 66 81.82 1271 reject_low 187 ALIGNMENT 0 Y12-19c10.q1k chr12 62 880 2150 2149 F 819 0.00 1271 reject_low 190 ALIGNMENT 30 Y12-19c10.q1k chr12 946 881 1069602 1069667 C 66 81.82 1271 reject_low 192 ALIGNMENT 945 Y12-19c10.q1k chr08 36 1104 805 1868 F 1069 96.73 1271 reject_low 11 ALIGNMENT 0 Y12-19c10.q1k chr12 62 880 2042 2041 F 819 0.00 1271 reject_low 169 ALIGNMENT 47 Y12-19c10.q1k chr12 882 994 2079 2190 F 113 81.42 1271 reject_low 147 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 1957 1956 F 820 0.00 1271 reject_low 114 ALIGNMENT 30 Y12-19c10.q1k chr06 893 961 1048 1115 F 69 81.16 1271 reject_low 205 ALIGNMENT 0 Y12-19c10.q1k chr12 62 892 2126 2125 F 831 0.00 1271 reject_low 207 ALIGNMENT 0 Y12-19c10.q1k chr05 880 62 575067 575066 C 819 0.00 1271 reject_low 167 ALIGNMENT 69 Y12-19c10.q1k chr02 882 1104 1990 2207 F 223 78.03 1271 reject_low 72 ALIGNMENT 0 Y12-19c10.q1k chr09 947 1020 2147 2324 F 74 0.00 1271 reject_low 226 ALIGNMENT 48 Y12-19c10.q1k chr09 893 1054 1949 2106 F 162 77.78 1271 reject_low 143 ALIGNMENT 76 Y12-19c10.q1k chr15 1104 885 1089328 1089542 C 220 79.55 1271 reject_low 47 ALIGNMENT 42 Y12-19c10.q1k chr10 929 1054 1680 1801 F 126 80.16 1271 reject_low 160 ALIGNMENT 42 Y12-19c10.q1k chr09 929 1054 1697 1818 F 126 80.16 1271 reject_low 159 ALIGNMENT 0 Y12-19c10.q1k chr05 962 1020 1945 2000 F 59 0.00 1271 reject_low 230 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1069847 1069846 C 820 0.00 1271 reject_low 65 ALIGNMENT 989 Y12-19c10.p1k chr12 21 1186 1074595 1075759 F 1166 95.45 1193 ambiguous_tel 8 ALIGNMENT 989 Y12-19c10.p1k chr04 21 1186 1528394 1529558 F 1166 95.45 1193 ambiguous_tel 6 ALIGNMENT 0 Y12-19c10.q1k chr05 62 892 1805 1804 F 831 0.00 1271 reject_low 227 ALIGNMENT 0 Y12-19c10.q1k chr08 62 881 1723 1722 F 820 0.00 1271 reject_low 134 ALIGNMENT 0 Y12-19c10.q1k chr02 62 876 1769 1768 F 815 0.00 1271 reject_low 131 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 1866 1865 F 820 0.00 1271 reject_low 98 ALIGNMENT 0 Y12-19c10.q1k chr12 62 892 2018 2017 F 831 0.00 1271 reject_low 125 ALIGNMENT 66 Y12-19c10.q1k chr10 882 1010 1957 2083 F 129 86.05 1271 reject_low 114 ALIGNMENT 61 Y12-19c10.q1k chr16 1057 882 946251 946422 C 176 80.11 1271 reject_low 120 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 2065 2064 F 820 0.00 1271 reject_low 201 ALIGNMENT 84 Y12-19c10.q1k chr12 882 1104 1827 2044 F 223 81.17 1271 reject_low 32 ALIGNMENT 0 Y12-19c10.q1k chr07 881 62 1089107 1089106 C 820 0.00 1271 reject_low 146 ALIGNMENT 0 Y12-19c10.q1k chr02 62 880 1953 1952 F 819 0.00 1271 reject_low 109 ALIGNMENT 0 Y12-19c10.q1k chr08 62 881 1759 1758 F 820 0.00 1271 reject_low 181 ALIGNMENT 27 Y12-19c10.q1k chr08 946 893 560417 560470 C 54 83.33 1271 reject_low 221 ALIGNMENT 30 Y12-19c10.q1k chr16 946 881 945962 946027 C 66 81.82 1271 reject_low 198 ALIGNMENT 93 Y12-19c10.q1k chr16 882 1104 1519 1736 F 223 82.51 1271 reject_low 30 ALIGNMENT 0 Y12-19c10.q1k chr16 62 881 1555 1554 F 820 0.00 1271 reject_low 83 ALIGNMENT 60 Y12-19c10.q1k chr12 893 1054 2018 2175 F 162 80.86 1271 reject_low 125 ALIGNMENT 60 Y12-19c10.q1k chr12 885 1104 1938 2152 F 220 77.27 1271 reject_low 90 ALIGNMENT 947 Y12-19c10.p1k chr12 1186 70 8256 9370 C 1117 95.43 1193 reject_low 16 ALIGNMENT 59 Y12-19c10.q1k chr12 882 1057 1755 1926 F 176 79.55 1271 reject_low 122 ALIGNMENT 90 Y12-19c10.q1k chr04 1080 882 1530114 1530308 C 199 83.42 1271 reject_low 60 ALIGNMENT 0 Y12-19c10.q1k chr12 892 62 1076355 1076354 C 831 0.00 1271 reject_low 210 ALIGNMENT 0 Y12-19c10.q1k chr14 62 892 1909 1908 F 831 0.00 1271 reject_low 212 ALIGNMENT 44 Y12-19c10.q1k chr15 994 882 1089254 1089365 C 113 80.53 1271 reject_low 158 ALIGNMENT 0 Y12-19c10.q1k chr07 884 62 1089248 1089247 C 823 0.00 1271 reject_low 89 ALIGNMENT 0 Y12-19c10.q1k chr05 62 928 1481 1480 F 867 0.00 1271 reject_low 166 ALIGNMENT 82 Y12-19c10.q1k chr09 882 1057 1866 2037 F 176 83.52 1271 reject_low 98 ALIGNMENT 0 Y12-19c10.q1k chr09 962 1020 2233 2324 F 59 0.00 1271 reject_low 231 ALIGNMENT 0 Y12-19c10.q1k chr16 892 62 946052 946051 C 831 0.00 1271 reject_low 215 ALIGNMENT 40 Y12-19c10.q1k chr10 882 946 2029 2093 F 65 87.69 1271 reject_low 175 ALIGNMENT 0 Y12-19c10.q1k chr08 892 62 560615 560614 C 831 0.00 1271 reject_low 112 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 1794 1793 F 820 0.00 1271 reject_low 37 ALIGNMENT 926 Y12-19c10.q1k chr16 1080 36 946300 947340 C 1045 96.75 1271 reject_low 12 ALIGNMENT 27 Y12-19c10.q1k chr08 961 893 560439 560506 C 69 79.71 1271 reject_low 219 ALIGNMENT 947 Y12-19c10.p1k chr12 1186 70 2721 3835 C 1117 95.43 1193 reject_low 13 ALIGNMENT 0 Y12-19c10.q1k chr02 62 892 1677 1676 F 831 0.00 1271 reject_low 19 ALIGNMENT 60 Y12-19c10.q1k chr16 885 1104 1630 1844 F 220 77.27 1271 reject_low 94 ALIGNMENT 67 Y12-19c10.q1k chr05 882 1054 1542 1710 F 173 81.50 1271 reject_low 113 ALIGNMENT 0 Y12-19c10.q1k chr15 881 62 1089474 1089473 C 820 0.00 1271 reject_low 69 ALIGNMENT 30 Y12-19c10.q1k chr16 961 893 945984 946051 C 69 81.16 1271 reject_low 215 ALIGNMENT 0 Y12-19c10.q1k chr09 62 928 1697 1696 F 867 0.00 1271 reject_low 159 ALIGNMENT 956 Y12-19c10.p1k chr06 1186 70 1758 2872 C 1117 95.70 1193 reject_low 14 ALIGNMENT 90 Y12-19c10.q1k chr13 882 1080 1847 2041 F 199 83.42 1271 reject_low 67 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 1918 1917 F 820 0.00 1271 reject_low 84 ALIGNMENT 49 Y12-19c10.q1k chr08 1054 885 560565 560730 C 170 78.24 1271 reject_low 141 ALIGNMENT 82 Y12-19c10.q1k chr10 882 1057 1849 2020 F 176 83.52 1271 reject_low 99 ALIGNMENT 57 Y12-19c10.q1k chr12 1054 893 1069642 1069799 C 162 80.25 1271 reject_low 136 ALIGNMENT 1025 Y12-19c10.p1k chr09 1186 21 2892 4056 C 1166 96.48 1193 ambiguous_tel 1 ALIGNMENT 0 Y12-19c10.q1k chr15 892 62 1089319 1089318 C 831 0.00 1271 reject_low 213 ALIGNMENT 36 Y12-19c10.q1k chr06 893 946 976 1029 F 54 88.89 1271 reject_low 182 ALIGNMENT 76 Y12-19c10.q1k chr12 1104 885 1069701 1069915 C 220 79.55 1271 reject_low 45 ALIGNMENT 0 Y12-19c10.q1k chr16 62 881 1663 1662 F 820 0.00 1271 reject_low 70 ALIGNMENT 30 Y12-19c10.q1k chr16 893 961 1818 1885 F 69 81.16 1271 reject_low 214 ALIGNMENT 88 Y12-19c10.q1k chr14 882 1080 1646 1840 F 199 83.42 1271 reject_low 81 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 2079 2078 F 820 0.00 1271 reject_low 147 ALIGNMENT 27 Y12-19c10.q1k chr02 893 946 2361 2414 F 54 83.33 1271 reject_low 220 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1830 1829 F 820 0.00 1271 reject_low 224 ALIGNMENT 47 Y12-19c10.q1k chr16 882 994 1771 1882 F 113 81.42 1271 reject_low 151 ALIGNMENT 93 Y12-19c10.q1k chr12 1104 882 1069773 1069990 C 223 82.51 1271 reject_low 25 ALIGNMENT 0 Y12-19c10.q1k chr13 62 884 1778 1777 F 823 0.00 1271 reject_low 54 ALIGNMENT 93 Y12-19c10.q1k chr13 882 1104 1703 1920 F 223 82.51 1271 reject_low 27 ALIGNMENT 78 Y12-19c10.q1k chr16 1104 882 946061 946278 C 223 79.82 1271 reject_low 42 ALIGNMENT 75 Y12-19c10.q1k chr02 893 1054 2073 2230 F 162 83.33 1271 reject_low 107 ALIGNMENT 0 Y12-19c10.q1k chr13 62 881 1847 1846 F 820 0.00 1271 reject_low 67 ALIGNMENT 44 Y12-19c10.q1k chr08 994 882 560442 560553 C 113 80.53 1271 reject_low 155 ALIGNMENT 76 Y12-19c10.q1k chr16 1054 882 946290 946458 C 173 83.24 1271 reject_low 104 ALIGNMENT 0 Y12-19c10.q1k chr05 62 892 1877 1876 F 831 0.00 1271 reject_low 230 ALIGNMENT 0 Y12-19c10.q1k chr09 937 1020 2245 2324 F 84 0.00 1271 reject_low 229 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 7614 7613 F 820 0.00 1271 reject_low 148 ALIGNMENT 28 Y12-19c10.q1k chr10 882 913 2065 2096 F 32 96.88 1271 reject_low 201 ALIGNMENT 0 Y12-19c10.q1k chr07 884 62 1089284 1089283 C 823 0.00 1271 reject_low 52 ALIGNMENT 76 Y12-19c10.q1k chr04 1104 885 1530163 1530377 C 220 79.55 1271 reject_low 43 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 2029 2028 F 820 0.00 1271 reject_low 175 ALIGNMENT 36 Y12-19c10.q1k chr12 946 881 1076373 1076438 C 66 84.85 1271 reject_low 179 ALIGNMENT 58 Y12-19c10.q1k chr12 882 1057 1791 1962 F 176 78.98 1271 reject_low 132 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1686 1685 F 820 0.00 1271 reject_low 48 ALIGNMENT 0 Y12-19c10.q1k chr04 881 62 1530417 1530416 C 820 0.00 1271 reject_low 74 ALIGNMENT 0 Y12-19c10.q1k chr04 892 62 1530154 1530153 C 831 0.00 1271 reject_low 203 ALIGNMENT 0 Y12-19c10.q1k chr16 892 62 946160 946159 C 831 0.00 1271 reject_low 130 ALIGNMENT 64 Y12-19c10.q1k chr09 882 1054 1722 1890 F 173 80.92 1271 reject_low 115 ALIGNMENT 0 Y12-19c10.q1k chr16 928 62 946484 946483 C 867 0.00 1271 reject_low 185 ALIGNMENT 878 Y12-19c10.q1k chr13 36 1057 821 1838 F 1022 95.69 1271 reject_low 17 ALIGNMENT 0 Y12-19c10.q1k chr05 937 1020 1957 2000 F 84 0.00 1271 reject_low 228 ALIGNMENT 60 Y12-19c10.q1k chr16 1104 885 946025 946239 C 220 77.27 1271 reject_low 95 ALIGNMENT 0 Y12-19c10.q1k chr12 880 62 1076439 1076438 C 819 0.00 1271 reject_low 179 ALIGNMENT 0 Y12-19c10.q1k chr13 62 881 1739 1738 F 820 0.00 1271 reject_low 80 ALIGNMENT 88 Y12-19c10.q1k chr02 882 1054 1522 1690 F 173 85.55 1271 reject_low 96 ALIGNMENT 93 Y12-19c10.q1k chr04 1104 882 1530235 1530452 C 223 82.51 1271 reject_low 21 ALIGNMENT 0 Y12-19c10.q1k chr06 62 970 909 908 F 909 0.00 1271 reject_low 164 ALIGNMENT 0 Y12-19c10.q1k chr14 62 884 1721 1720 F 823 0.00 1271 reject_low 93 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946423 946422 C 820 0.00 1271 reject_low 120 ALIGNMENT 88 Y12-19c10.q1k chr12 882 1080 7398 7592 F 199 83.42 1271 reject_low 77 ALIGNMENT 0 Y12-19c10.q1k chr10 62 881 1849 1848 F 820 0.00 1271 reject_low 99 ALIGNMENT 901 Y12-19c10.q1k chr06 36 1080 47 1087 F 1045 95.89 1271 reject_low 14 ALIGNMENT 0 Y12-19c10.q1k chr14 62 881 1862 1861 F 820 0.00 1271 reject_low 150 ALIGNMENT 0 Y12-19c10.q1k chr14 62 881 1646 1645 F 820 0.00 1271 reject_low 81 ALIGNMENT 88 Y12-19c10.q1k chr05 1080 882 575051 575245 C 199 83.42 1271 reject_low 75 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 7398 7397 F 820 0.00 1271 reject_low 77 ALIGNMENT 76 Y12-19c10.q1k chr08 1054 882 560601 560769 C 173 83.24 1271 reject_low 102 ALIGNMENT 90 Y12-19c10.q1k chr16 882 1080 1663 1857 F 199 83.42 1271 reject_low 70 ALIGNMENT 0 Y12-19c10.q1k chr12 62 892 7553 7552 F 831 0.00 1271 reject_low 126 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946387 946386 C 820 0.00 1271 reject_low 119 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 7362 7361 F 820 0.00 1271 reject_low 24 ALIGNMENT 884 Y12-19c10.q1k chr04 1057 36 1530317 1531334 C 1022 95.89 1271 ambiguous_tel 6 ALIGNMENT 60 Y12-19c10.q1k chr14 893 1054 1801 1958 F 162 80.86 1271 reject_low 128 ALIGNMENT 39 Y12-19c10.q1k chr16 946 881 946070 946135 C 66 86.36 1271 reject_low 174 ALIGNMENT 69 Y12-19c10.q1k chr08 1054 893 560457 560614 C 162 82.72 1271 reject_low 112 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 2118 2117 F 820 0.00 1271 reject_low 225 ALIGNMENT 0 Y12-19c10.q1k chr02 62 884 1705 1704 F 823 0.00 1271 reject_low 97 ALIGNMENT 947 Y12-19c10.p1k chr08 1186 70 2453 3567 C 1117 95.43 1193 reject_low 11 ALIGNMENT 0 Y12-19c10.q1k chr15 881 62 1089366 1089365 C 820 0.00 1271 reject_low 158 ALIGNMENT 0 Y12-19c10.q1k chr08 62 957 1654 1653 F 896 0.00 1271 reject_low 216 ALIGNMENT 76 Y12-19c10.q1k chr12 1104 885 1076364 1076578 C 220 79.55 1271 reject_low 46 ALIGNMENT 30 Y12-19c10.q1k chr12 961 893 1076287 1076354 C 69 81.16 1271 reject_low 210 ALIGNMENT 0 Y12-19c10.q1k chr08 62 881 1687 1686 F 820 0.00 1271 reject_low 87 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946279 946278 C 820 0.00 1271 reject_low 42 ALIGNMENT 43 Y12-19c10.q1k chr02 882 946 2242 2306 F 65 89.23 1271 reject_low 162 ALIGNMENT 0 Y12-19c10.q1k chr05 880 62 574959 574958 C 819 0.00 1271 reject_low 188 ALIGNMENT 0 Y12-19c10.q1k chr16 62 884 1594 1593 F 823 0.00 1271 reject_low 56 ALIGNMENT 884 Y12-19c10.q1k chr12 1057 36 1076518 1077535 C 1022 95.89 1271 ambiguous_tel 8 ALIGNMENT 119 Y12-19c10.q1k chr09 882 1057 1794 1965 F 176 90.91 1271 reject_low 37 ALIGNMENT 63 Y12-19c10.q1k chr02 882 1054 1738 1906 F 173 80.35 1271 reject_low 117 ALIGNMENT 51 Y12-19c10.q1k chr02 885 1104 1597 1811 F 220 75.45 1271 reject_low 106 ALIGNMENT 0 Y12-19c10.q1k chr12 884 62 1069916 1069915 C 823 0.00 1271 reject_low 45 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1506 1505 F 820 0.00 1271 reject_low 139 ALIGNMENT 90 Y12-19c10.q1k chr12 1080 882 1069652 1069846 C 199 83.42 1271 reject_low 65 ALIGNMENT 38 Y12-19c10.q1k chr06 921 1104 896 1074 F 184 75.00 1271 reject_low 121 ALIGNMENT 88 Y12-19c10.q1k chr04 1080 882 1530222 1530416 C 199 83.42 1271 reject_low 74 ALIGNMENT 992 Y12-19c10.p1k chr14 1186 21 2504 3668 C 1166 95.54 1193 ambiguous_tel 10 ALIGNMENT 0 Y12-19c10.q1k chr09 62 881 2082 2081 F 820 0.00 1271 reject_low 226 ALIGNMENT 904 Y12-19c10.q1k chr02 36 1080 640 1680 F 1045 95.98 1271 reject_low 15 ALIGNMENT 0 Y12-19c10.q1k chr08 892 62 560471 560470 C 831 0.00 1271 reject_low 221 ALIGNMENT 93 Y12-19c10.q1k chr15 1104 882 1089400 1089617 C 223 82.51 1271 reject_low 29 ALIGNMENT 43 Y12-19c10.q1k chr08 946 882 560525 560589 C 65 89.23 1271 reject_low 163 ALIGNMENT 73 Y12-19c10.q1k chr12 885 1104 7437 7651 F 220 79.09 1271 reject_low 53 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1069955 1069954 C 820 0.00 1271 reject_low 78 ALIGNMENT 84 Y12-19c10.q1k chr08 1080 882 560611 560805 C 199 82.91 1271 reject_low 85 ALIGNMENT 0 Y12-19c10.q1k chr12 62 881 1755 1754 F 820 0.00 1271 reject_low 122 ALIGNMENT 39 Y12-19c10.q1k chr06 971 1054 909 989 F 84 84.52 1271 reject_low 164 ALIGNMENT 0 Y12-19c10.q1k chr05 947 1020 1859 2000 F 74 0.00 1271 reject_low 227 ALIGNMENT 0 Y12-19c10.q1k chr02 62 881 1990 1989 F 820 0.00 1271 reject_low 72 ALIGNMENT 0 Y12-19c10.q1k chr16 62 892 1818 1817 F 831 0.00 1271 reject_low 214 ALIGNMENT 93 Y12-19c10.q1k chr12 882 1104 7362 7579 F 223 82.51 1271 reject_low 24 ALIGNMENT 0 Y12-19c10.q1k chr14 62 884 1685 1684 F 823 0.00 1271 reject_low 55 ALIGNMENT 47 Y12-19c10.q1k chr13 882 994 1955 2066 F 113 81.42 1271 reject_low 149 ALIGNMENT 68 Y12-19c10.q1k chr10 882 1080 1813 2007 F 199 79.90 1271 reject_low 101 ALIGNMENT 32 Y12-19c10.q1k chr02 881 984 1845 1947 F 104 77.88 1271 reject_low 186 ALIGNMENT 0 Y12-19c10.q1k chr02 62 880 1881 1880 F 819 0.00 1271 reject_low 118 ALIGNMENT 0 Y12-19c10.q1k chr16 881 62 946351 946350 C 820 0.00 1271 reject_low 33 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1069739 1069738 C 820 0.00 1271 reject_low 156 ALIGNMENT 0 Y12-19c10.q1k chr12 881 62 1076618 1076617 C 820 0.00 1271 reject_low 79 ALIGNMENT 30 Y12-19c10.q1k chr12 893 961 7661 7728 F 69 81.16 1271 reject_low 208 ALIGNMENT 989 Y12-19c10.p1k chr12 21 1186 1067932 1069096 F 1166 95.45 1193 ambiguous_tel 7 ALIGNMENT 0 Y12-19c10.q1k chr05 62 881 1578 1577 F 820 0.00 1271 reject_low 161 ALIGNMENT 850 Y12-19c11.q1k chr16 1121 35 453634 454727 C 1087 91.63 1151 accept 0 ALIGNMENT 629 Y12-19c11.p1k chr16 17 853 450627 451456 F 837 92.71 1059 accept 0 ALIGNMENT 0 Y12-19c15.q1k chr04 767 62 492321 492320 C 706 0.00 1197 reject_low 1 ALIGNMENT 213 Y12-19c15.q1k chr04 1155 768 491930 492320 C 388 84.54 1197 reject_low 1 ALIGNMENT 898 Y12-19c15.p1k chr02 23 1056 329667 330720 F 1034 97.49 1118 accept 0 ALIGNMENT 920 Y12-19c15.q1k chr02 1155 37 333420 334541 C 1119 95.00 1197 accept 0 ALIGNMENT 891 Y12-19c16.p1k chr04 1068 21 116539 117614 C 1048 96.85 1140 accept 0 ALIGNMENT 946 Y12-19c16.q1k chr04 41 1139 113781 114892 F 1099 96.09 1212 accept 0 ALIGNMENT 602 Y12-19c17.q1k chr16 804 36 214926 215692 C 769 93.50 1240 accept 0 ALIGNMENT 28 Y12-19c17.p1k chr16 23 61 211537 211575 F 39 94.87 1084|0,3 accept 0 ALIGNMENT 427 Y12-19c17.p1k chr16 55 764 211906 212599 F 710 88.59 1084|4,0 accept 0 ALIGNMENT 0 Y12-19c17.p1k chr16 59 58 211573 211909 F 0 0.00 1084 accept 0 ALIGNMENT 564 Y12-19c18.p1k chr15 21 892 908402 909280 F 872 89.56 1044 accept 0 ALIGNMENT 469 Y12-19c18.q1k chr15 625 35 911816 912410 C 591 93.06 1180 accept 0 ALIGNMENT 975 Y12-19c19.p1k chr01 1097 26 92502 93573 C 1072 97.39 1100 accept 0 ALIGNMENT 968 Y12-19c19.q1k chr01 35 1187 87727 88877 F 1153 95.58 1193 accept 0 ALIGNMENT 461 Y12-19c20.q1k chr12 923 210 162414 163131 C 714 88.38 1136 accept_chi 1 ALIGNMENT 983 Y12-19c20.p1k chr04 21 1114 557042 558141 F 1094 97.53 1119 accept_chi 0 ALIGNMENT 298 Y12-19c23.q1k chr02 262 707 413091 413519 F 446 89.46 1488 accept 0 ALIGNMENT 921 Y12-19c23.p1k chr02 1074 33 416112 417154 C 1042 97.22 1074 accept 0 ALIGNMENT 649 Y12-19c24.p1k chr07 868 21 32525 33371 C 848 93.40 1129 accept 0 ALIGNMENT 762 Y12-19c24.q1k chr07 10 1006 30201 31182 F 997 94.28 1135 accept 0 ALIGNMENT 292 Y12-19d01.q1k chr13 476 57 633774 634192 C 420 90.95 1545 reject_low 1 ALIGNMENT 349 Y12-19d01.q1k chr16 57 476 96775 97193 F 420 95.48 1545 accept 0 ALIGNMENT 0 Y12-19d02.p1k chr12 113 674 489481 489480 F 562 0.00 1252 reject_low 2 ALIGNMENT 68 Y12-19d02.p1k chr12 22 97 482085 482162 F 76 97.37 1252 reject_low 5 ALIGNMENT 533 Y12-19d02.q1k chr12 679 33 463785 464424 C 647 95.36 1370 accept 0 ALIGNMENT 0 Y12-19d02.p1k chr12 98 674 472582 472581 F 577 0.00 1252 reject_low 4 ALIGNMENT 533 Y12-19d02.q1k chr12 679 33 454648 455287 C 647 95.36 1370 reject_low 1 ALIGNMENT 68 Y12-19d02.p1k chr12 22 97 472505 472582 F 76 97.37 1252 reject_low 4 ALIGNMENT 600 Y12-19d02.p1k chr12 22 931 459716 460653 F 910 90.77 1252 accept 0 ALIGNMENT 68 Y12-19d02.p1k chr12 22 97 468853 468930 F 76 97.37 1252 reject_low 3 ALIGNMENT 0 Y12-19d02.p1k chr12 98 674 485814 485813 F 577 0.00 1252 reject_low 6 ALIGNMENT 0 Y12-19d02.p1k chr12 98 674 468930 468929 F 577 0.00 1252 reject_low 3 ALIGNMENT 74 Y12-19d02.p1k chr12 22 112 489389 489481 F 91 94.51 1252 reject_low 2 ALIGNMENT 0 Y12-19d02.p1k chr12 98 674 482162 482161 F 577 0.00 1252 reject_low 5 ALIGNMENT 68 Y12-19d02.p1k chr12 22 97 485737 485814 F 76 97.37 1252 reject_low 6 ALIGNMENT 122 Y12-19d03.q1k chr11 495 359 457978 458114 C 137 98.54 1237 reject_low 14 ALIGNMENT 122 Y12-19d03.q1k chr04 359 495 802900 803036 F 137 98.54 1237 reject_low 12 ALIGNMENT 0 Y12-19d03.q1k chr07 496 684 535351 535350 F 189 0.00 1237 reject_low 9 ALIGNMENT 0 Y12-19d03.q1k chr07 358 62 817730 817729 C 297 0.00 1237 reject_low 13 ALIGNMENT 122 Y12-19d03.q1k chr07 495 359 817593 817729 C 137 98.54 1237 reject_low 13 ALIGNMENT 0 Y12-19d03.q1k chr13 358 62 357336 357335 C 297 0.00 1237 reject_low 16 ALIGNMENT 90 Y12-19d03.q1k chr02 662 493 197625 197791 C 170 85.88 1237 reject_low 3 ALIGNMENT 0 Y12-19d03.q1k chr07 62 358 931691 931690 F 297 0.00 1237 reject_low 19 ALIGNMENT 0 Y12-19d03.q1k chr06 358 62 162130 162129 C 297 0.00 1237 reject_low 18 ALIGNMENT 0 Y12-19d03.q1k chr04 62 395 992637 992636 F 334 0.00 1237 accept 0 ALIGNMENT 0 Y12-19d03.q1k chr02 496 684 221176 221175 F 189 0.00 1237 reject_low 7 ALIGNMENT 0 Y12-19d03.q1k chr06 684 496 161994 161993 C 189 0.00 1237 reject_low 18 ALIGNMENT 119 Y12-19d03.q1k chr03 495 359 124326 124462 C 137 97.81 1237 reject_low 17 ALIGNMENT 46 Y12-19d03.q1k chr06 359 495 143535 143670 F 137 80.29 1237 reject_low 31 ALIGNMENT 0 Y12-19d03.q1k chr10 496 684 483685 483684 F 189 0.00 1237 reject_low 23 ALIGNMENT 47 Y12-19d03.q1k chr04 495 358 992501 992637 C 138 80.43 1237 reject_low 27 ALIGNMENT 0 Y12-19d03.q1k chr01 496 684 183272 183271 F 189 0.00 1237 reject_low 24 ALIGNMENT 0 Y12-19d03.q1k chr13 684 496 357200 357199 C 189 0.00 1237 reject_low 16 ALIGNMENT 0 Y12-19d03.q1k chr01 356 684 165852 165851 F 329 0.00 1237 reject_low 2 ALIGNMENT 0 Y12-19d03.q1k chr10 496 684 472513 472512 F 189 0.00 1237 reject_low 22 ALIGNMENT 0 Y12-19d03.q1k chr15 62 357 594820 594819 F 296 0.00 1237 reject_low 10 ALIGNMENT 0 Y12-19d03.q1k chr03 583 496 142770 142940 C 88 0.00 1237 reject_low 26 ALIGNMENT 0 Y12-19d03.q1k chr01 684 496 166029 166028 C 189 0.00 1237 reject_low 28 ALIGNMENT 0 Y12-19d03.q1k chr07 62 357 535214 535213 F 296 0.00 1237 reject_low 9 ALIGNMENT 0 Y12-19d03.q1k chr03 496 684 151653 151652 F 189 0.00 1237 reject_low 6 ALIGNMENT 46 Y12-19d03.q1k chr01 495 359 166028 166163 C 137 80.29 1237 reject_low 28 ALIGNMENT 121 Y12-19d03.q1k chr07 357 495 401960 402098 F 139 97.84 1237 reject_low 11 ALIGNMENT 0 Y12-19d03.q1k chr02 492 62 197792 197791 C 431 0.00 1237 reject_low 3 ALIGNMENT 123 Y12-19d03.q1k chr15 358 495 594820 594957 F 138 98.55 1237 reject_low 10 ALIGNMENT 122 Y12-19d03.q1k chr13 495 359 357199 357335 C 137 98.54 1237 reject_low 16 ALIGNMENT 0 Y12-19d03.q1k chr07 62 358 541352 541351 F 297 0.00 1237 reject_low 21 ALIGNMENT 0 Y12-19d03.q1k chr07 62 356 401960 401959 F 295 0.00 1237 reject_low 11 ALIGNMENT 0 Y12-19d03.q1k chr15 496 684 594957 594956 F 189 0.00 1237 reject_low 10 ALIGNMENT 0 Y12-19d03.q1k chr01 62 358 183136 183135 F 297 0.00 1237 reject_low 24 ALIGNMENT 0 Y12-19d03.q1k chr06 62 358 137908 137907 F 297 0.00 1237 reject_low 30 ALIGNMENT 119 Y12-19d03.q1k chr06 495 359 161993 162129 C 137 97.81 1237 reject_low 18 ALIGNMENT 0 Y12-19d03.q1k chr06 660 684 162296 162295 F 25 0.00 1237 reject_low 4 ALIGNMENT 0 Y12-19d03.q1k chr02 62 355 259573 259572 F 294 0.00 1237 reject_low 8 ALIGNMENT 0 Y12-19d03.q1k chr07 496 684 931827 931826 F 189 0.00 1237 reject_low 19 ALIGNMENT 0 Y12-19d03.q1k chr03 684 664 142690 142689 C 21 0.00 1237 reject_low 26 ALIGNMENT 0 Y12-19d03.q1k chr13 62 358 184170 184169 F 297 0.00 1237 reject_low 20 ALIGNMENT 0 Y12-19d03.q1k chr06 496 684 137786 137785 F 189 0.00 1237 reject_low 25 ALIGNMENT 120 Y12-19d03.q1k chr03 495 358 142941 143078 C 138 97.83 1237 reject_low 26 ALIGNMENT 0 Y12-19d03.q1k chr03 62 351 151511 151510 F 290 0.00 1237 reject_low 6 ALIGNMENT 0 Y12-19d03.q1k chr06 583 62 181038 181037 C 522 0.00 1237 reject_low 5 ALIGNMENT 0 Y12-19d03.q1k chr11 358 62 458115 458114 C 297 0.00 1237 reject_low 14 ALIGNMENT 0 Y12-19d03.q1k chr04 684 496 992502 992501 C 189 0.00 1237 reject_low 27 ALIGNMENT 136 Y12-19d03.q1k chr01 30 355 165527 165852 F 326 80.98 1237 reject_low 2 ALIGNMENT 0 Y12-19d03.q1k chr02 684 663 197626 197625 C 22 0.00 1237 reject_low 3 ALIGNMENT 0 Y12-19d03.q1k chr11 684 496 517291 517290 C 189 0.00 1237 reject_low 15 ALIGNMENT 0 Y12-19d03.q1k chr04 496 684 803036 803035 F 189 0.00 1237 reject_low 12 ALIGNMENT 0 Y12-19d03.q1k chr06 62 358 143535 143534 F 297 0.00 1237 reject_low 31 ALIGNMENT 0 Y12-19d03.q1k chr07 684 496 817594 817593 C 189 0.00 1237 reject_low 13 ALIGNMENT 125 Y12-19d03.q1k chr02 356 495 221037 221176 F 140 98.57 1237 reject_low 7 ALIGNMENT 116 Y12-19d03.q1k chr10 359 495 472377 472513 F 137 97.08 1237 reject_low 22 ALIGNMENT 75 Y12-19d03.q1k chr03 663 584 142689 142769 C 80 98.75 1237 reject_low 26 ALIGNMENT 0 Y12-19d03.q1k chr07 496 684 402098 402097 F 189 0.00 1237 reject_low 11 ALIGNMENT 116 Y12-19d03.q1k chr10 359 495 483549 483685 F 137 97.08 1237 reject_low 23 ALIGNMENT 72 Y12-19d03.q1k chr06 584 659 162221 162296 F 76 98.68 1237 reject_low 4 ALIGNMENT 46 Y12-19d03.q1k chr03 495 359 168793 168928 C 137 80.29 1237 reject_low 29 ALIGNMENT 0 Y12-19d03.q1k chr07 496 684 541488 541487 F 189 0.00 1237 reject_low 21 ALIGNMENT 120 Y12-19d03.q1k chr03 352 495 151511 151653 F 144 97.22 1237 reject_low 6 ALIGNMENT 0 Y12-19d03.q1k chr03 357 62 143079 143078 C 296 0.00 1237 reject_low 26 ALIGNMENT 569 Y12-19d03.q1k chr04 396 1170 992637 993409 F 775 92.13 1237 accept 0 ALIGNMENT 0 Y12-19d03.q1k chr02 496 684 259712 259711 F 189 0.00 1237 reject_low 8 ALIGNMENT 0 Y12-19d03.q1k chr10 62 358 483549 483548 F 297 0.00 1237 reject_low 23 ALIGNMENT 0 Y12-19d03.q1k chr02 62 355 221037 221036 F 294 0.00 1237 reject_low 7 ALIGNMENT 0 Y12-19d03.q1k chr02 684 365 221342 221341 C 320 0.00 1237 reject_low 1 ALIGNMENT 123 Y12-19d03.q1k chr07 358 495 535214 535351 F 138 98.55 1237 reject_low 9 ALIGNMENT 72 Y12-19d03.q1k chr06 655 584 180966 181037 C 72 100.00 1237 reject_low 5 ALIGNMENT 0 Y12-19d03.q1k chr03 684 496 168794 168793 C 189 0.00 1237 reject_low 29 ALIGNMENT 0 Y12-19d03.q1k chr10 62 358 472377 472376 F 297 0.00 1237 reject_low 22 ALIGNMENT 119 Y12-19d03.q1k chr13 359 495 184170 184306 F 137 97.81 1237 reject_low 20 ALIGNMENT 0 Y12-19d03.q1k chr06 496 684 143670 143669 F 189 0.00 1237 reject_low 31 ALIGNMENT 0 Y12-19d03.q1k chr03 358 62 168929 168928 C 297 0.00 1237 reject_low 29 ALIGNMENT 0 Y12-19d03.q1k chr04 62 358 802900 802899 F 297 0.00 1237 reject_low 12 ALIGNMENT 46 Y12-19d03.q1k chr06 359 495 137908 138043 F 137 80.29 1237 reject_low 30 ALIGNMENT 0 Y12-19d03.q1k chr01 358 62 166164 166163 C 297 0.00 1237 reject_low 28 ALIGNMENT 122 Y12-19d03.q1k chr11 495 359 517290 517426 C 137 98.54 1237 reject_low 15 ALIGNMENT 116 Y12-19d03.q1k chr07 359 495 541352 541488 F 137 97.08 1237 reject_low 21 ALIGNMENT 104 Y12-19d03.q1k chr01 359 495 183136 183272 F 137 94.16 1237 reject_low 24 ALIGNMENT 731 Y12-19d03.p1k chr04 979 21 996427 997379 C 959 93.95 1226 accept 0 ALIGNMENT 0 Y12-19d03.q1k chr06 62 361 137658 137657 F 300 0.00 1237 reject_low 25 ALIGNMENT 0 Y12-19d03.q1k chr03 684 496 124327 124326 C 189 0.00 1237 reject_low 17 ALIGNMENT 0 Y12-19d03.q1k chr11 358 62 517427 517426 C 297 0.00 1237 reject_low 15 ALIGNMENT 0 Y12-19d03.q1k chr06 496 684 138043 138042 F 189 0.00 1237 reject_low 30 ALIGNMENT 0 Y12-19d03.q1k chr11 684 496 457979 457978 C 189 0.00 1237 reject_low 14 ALIGNMENT 125 Y12-19d03.q1k chr02 356 495 259573 259712 F 140 98.57 1237 reject_low 8 ALIGNMENT 0 Y12-19d03.q1k chr03 358 62 124463 124462 C 297 0.00 1237 reject_low 17 ALIGNMENT 119 Y12-19d03.q1k chr07 359 495 931691 931827 F 137 97.81 1237 reject_low 19 ALIGNMENT 0 Y12-19d03.q1k chr04 357 62 992638 992637 C 296 0.00 1237 reject_low 27 ALIGNMENT 87 Y12-19d03.q1k chr06 362 495 137658 137786 F 134 91.79 1237 reject_low 25 ALIGNMENT 0 Y12-19d03.q1k chr06 62 583 162221 162220 F 522 0.00 1237 reject_low 4 ALIGNMENT 207 Y12-19d03.q1k chr02 364 30 221341 221673 C 335 88.06 1237 reject_low 1 ALIGNMENT 0 Y12-19d03.q1k chr13 496 684 184306 184305 F 189 0.00 1237 reject_low 20 ALIGNMENT 0 Y12-19d03.q1k chr06 684 656 180967 180966 C 29 0.00 1237 reject_low 5 ALIGNMENT 569 Y12-19d04.p1k chr03 965 27 8125 9050 C 939 89.03 1252 ambiguous_tel 0 ALIGNMENT 694 Y12-19d04.q1k chr03 2 973 5927 6903 F 972 91.98 1236 ambiguous_tel 0 ALIGNMENT 690 Y12-19d04.q1k chr11 973 2 662503 663445 C 972 92.39 1236 ambiguous_tel 1 ALIGNMENT 555 Y12-19d04.p1k chr11 27 982 660361 661296 F 956 88.49 1252 ambiguous_tel 1 ALIGNMENT 909 Y12-19d05.p1k chr05 1211 33 546931 548093 C 1179 93.55 1238 accept 0 ALIGNMENT 816 Y12-19d05.q1k chr05 30 1096 542571 543617 F 1067 94.75 1328 accept 0 ALIGNMENT 361 Y12-19d06.q1k chr15 29 668 993007 993639 F 640 87.66 1359 accept 0 ALIGNMENT 1062 Y12-19d08.p1k chr07 23 1210 198221 199406 F 1188 96.80 1213 accept 0 ALIGNMENT 985 Y12-19d08.q1k chr07 1172 37 199726 200868 C 1136 96.30 1250 accept 0 ALIGNMENT 946 Y12-19d09.q1k chr13 1181 43 416788 417939 C 1139 95.79 1259 accept 0 ALIGNMENT 976 Y12-19d09.p1k chr13 29 1208 413768 414939 F 1180 95.68 1208 accept 0 ALIGNMENT 962 Y12-19d10.p1k chr12 26 1114 842876 843982 F 1089 97.06 1158 accept 0 ALIGNMENT 951 Y12-19d10.q1k chr12 1146 35 845711 846834 C 1112 96.58 1239 accept 0 ALIGNMENT 283 Y12-19d11.p1k chr09 36 505 206129 206607 F 470 88.09 976 reject_low 1 ALIGNMENT 286 Y12-19d11.p1k chr07 36 505 708111 708589 F 470 88.30 976 accept_trans 0 ALIGNMENT 952 Y12-19d11.q1k chr09 1115 35 207361 208445 C 1081 96.58 1218 reject_low 1 ALIGNMENT 970 Y12-19d11.q1k chr07 1115 35 709265 710349 C 1081 97.13 1218 accept_trans 0 ALIGNMENT 987 Y12-19d12.q1k chr12 34 1250 89268 90486 F 1217 94.25 1251 accept 0 ALIGNMENT 0 Y12-19d13.p1k chrm 899 183 16348 16347 C 717 0.00 1183 reject_low 1 ALIGNMENT 913 Y12-19d13.q1k chrm 35 1199 14691 15860 F 1165 96.22 1264 accept 0 ALIGNMENT 0 Y12-19d13.q1k chrm 512 718 17715 17930 F 207 0.00 1264 reject_low 2 ALIGNMENT 28 Y12-19d13.p1k chrm 182 130 16347 16399 C 53 84.91 1183 reject_low 1 ALIGNMENT 941 Y12-19d13.p1k chrm 1178 22 17871 19021 C 1157 97.41 1183 accept 0 ALIGNMENT 0 Y12-19d13.q1k chrm 777 879 17988 17987 F 103 0.00 1264 reject_low 2 ALIGNMENT 0 Y12-19d13.q1k chrm 62 127 17331 17330 F 66 0.00 1264 reject_low 2 ALIGNMENT 23 Y12-19d13.q1k chrm 719 776 17931 17988 F 58 84.48 1264 reject_low 2 ALIGNMENT 0 Y12-19d13.p1k chrm 129 62 16400 16399 C 68 0.00 1183 reject_low 1 ALIGNMENT 30 Y12-19d13.q1k chrm 128 511 17331 17714 F 384 73.70 1264 reject_low 2 ALIGNMENT 73 Y12-19d14.p1k chr12 22 98 468853 468930 F 77 98.70 1176 reject_low 3 ALIGNMENT 0 Y12-19d14.p1k chr12 99 818 472582 472581 F 720 0.00 1176 reject_low 4 ALIGNMENT 0 Y12-19d14.p1k chr12 99 818 468930 468929 F 720 0.00 1176 reject_low 3 ALIGNMENT 794 Y12-19d14.q1k chr12 1044 31 463408 464425 C 1014 93.29 1149 accept 0 ALIGNMENT 116 Y12-19d14.p1k chr12 826 963 451419 451556 F 138 94.93 1176 reject_low 1 ALIGNMENT 73 Y12-19d14.p1k chr12 22 98 472505 472582 F 77 98.70 1176 reject_low 4 ALIGNMENT 0 Y12-19d14.p1k chr12 99 818 482162 482161 F 720 0.00 1176 reject_low 5 ALIGNMENT 73 Y12-19d14.p1k chr12 22 98 485737 485814 F 77 98.70 1176 reject_low 6 ALIGNMENT 794 Y12-19d14.q1k chr12 1044 31 454271 455288 C 1014 93.29 1149 reject_low 1 ALIGNMENT 717 Y12-19d14.p1k chr12 18 963 459711 460693 F 946 93.55 1176 accept 0 ALIGNMENT 0 Y12-19d14.p1k chr12 114 818 489481 489480 F 705 0.00 1176 reject_low 2 ALIGNMENT 73 Y12-19d14.p1k chr12 22 98 482085 482162 F 77 98.70 1176 reject_low 5 ALIGNMENT 82 Y12-19d14.p1k chr12 22 113 489389 489481 F 92 96.74 1176 reject_low 2 ALIGNMENT 0 Y12-19d14.p1k chr12 62 825 451419 451418 F 764 0.00 1176 reject_low 1 ALIGNMENT 0 Y12-19d14.p1k chr12 99 818 485814 485813 F 720 0.00 1176 reject_low 6 ALIGNMENT 0 Y12-19d15.q1k chr11 148 62 431685 431684 C 87 0.00 1212 reject_low 1 ALIGNMENT 104 Y12-19d15.q1k chr11 297 149 431535 431684 C 149 90.60 1212 reject_low 1 ALIGNMENT 981 Y12-19d15.p1k chr08 21 1186 99421 100589 F 1166 95.88 1186 accept 0 ALIGNMENT 1009 Y12-19d15.q1k chr08 1181 37 103366 104519 C 1145 96.51 1212 accept 0 ALIGNMENT 0 Y12-19d15.q1k chr11 868 298 431536 431535 C 571 0.00 1212 reject_low 1 ALIGNMENT 1011 Y12-19d16.p1k chr16 1159 25 612178 613318 C 1135 97.44 1159 accept 0 ALIGNMENT 990 Y12-19d16.q1k chr16 39 1201 609261 610435 F 1163 95.53 1202 accept 0 ALIGNMENT 675 Y12-19d17.q1k chr15 36 942 1041098 1041993 F 907 91.51 1240 accept 0 ALIGNMENT 589 Y12-19d17.p1k chr15 801 13 1044450 1045260 C 789 92.90 1044 accept 0 ALIGNMENT 487 Y12-19d18.q1k chr04 35 666 655075 655701 F 632 93.99 1286 accept 0 ALIGNMENT 342 Y12-19d18.p1k chr04 546 12 661005 661550 C 535 88.60 1021 accept 0 ALIGNMENT 1025 Y12-19d19.p1k chr02 1144 30 501877 502991 C 1115 98.30 1146 accept 0 ALIGNMENT 979 Y12-19d19.q1k chr02 33 1129 497658 498766 F 1097 96.99 1218 accept 0 ALIGNMENT 945 Y12-19d20.p1k chr04 1100 22 354922 356011 C 1079 97.50 1103 accept 0 ALIGNMENT 908 Y12-19d21.p1k chr04 1114 27 322904 323999 C 1088 96.23 1114 accept 0 ALIGNMENT 850 Y12-19d22.q1k chr11 1100 39 525821 526872 C 1062 94.16 1184 accept 0 ALIGNMENT 943 Y12-19d22.p1k chr11 20 1107 523546 524623 F 1088 96.69 1119 accept 0 ALIGNMENT 923 Y12-19d24.p1k chr07 1062 18 895295 896329 C 1045 98.28 1073 accept 0 ALIGNMENT 995 Y12-19d24.q1k chr07 33 1110 892046 893124 F 1078 97.96 1121 accept 0 ALIGNMENT 1030 Y12-19e02.q1k chr07 31 1226 891851 893039 F 1196 96.57 1242 accept 0 ALIGNMENT 827 Y12-19e02.p1k chr07 1159 40 893178 894305 C 1120 92.14 1159 accept 0 ALIGNMENT 0 Y12-19e03.p1k chr05 816 62 397651 397650 C 755 0.00 1146 reject_low 1 ALIGNMENT 960 Y12-19e03.p1k chr02 17 1139 59016 60137 F 1123 96.71 1146 accept 0 ALIGNMENT 937 Y12-19e03.q1k chr02 1203 36 60214 61372 C 1168 95.21 1208 accept 0 ALIGNMENT 179 Y12-19e03.p1k chr05 1139 817 397330 397650 C 323 86.69 1146 reject_low 1 ALIGNMENT 957 Y12-19e05.p1k chr14 23 1132 80384 81481 F 1110 96.67 1238 accept 0 ALIGNMENT 925 Y12-19e05.q1k chr14 1095 31 84539 85602 C 1065 95.96 1270 accept 0 ALIGNMENT 854 Y12-19e06.q1k chr02 991 26 373917 374896 C 966 96.58 1229 accept 0 ALIGNMENT 956 Y12-19e06.p1k chr02 20 1162 370930 372100 F 1143 95.98 1195 accept 0 ALIGNMENT 968 Y12-19e07.p1k chr13 1145 39 918190 919309 C 1107 96.66 1192 reject_low 2 ALIGNMENT 117 Y12-19e07.q1k chr16 152 29 15498 15621 C 124 99.19 1199 reject_low 1 ALIGNMENT 942 Y12-19e07.p1k chr15 1145 28 1078367 1079497 C 1118 95.62 1192 accept_tel 0 ALIGNMENT 0 Y12-19e07.q1k chr16 211 153 15501 15497 C 59 0.00 1199 reject_low 1 ALIGNMENT 660 Y12-19e07.q1k chr16 1022 212 14669 15500 C 811 94.70 1199 reject_low 1 ALIGNMENT 950 Y12-19e07.p1k chr16 39 1145 11655 12774 F 1107 96.12 1192 reject_low 1 ALIGNMENT 830 Y12-19e07.q1k chr15 29 1032 1075453 1076479 F 1004 95.12 1199 accept_tel 0 ALIGNMENT 0 Y12-19e09.p1k chr04 258 62 492321 492320 C 197 0.00 1171 reject_low 1 ALIGNMENT 1011 Y12-19e09.q1k chr02 40 1250 329956 331186 F 1211 95.79 1252 accept 0 ALIGNMENT 1001 Y12-19e09.p1k chr02 1144 22 332925 334047 C 1123 97.51 1171 accept 0 ALIGNMENT 0 Y12-19e09.p1k chr04 860 687 491894 491893 C 174 0.00 1171 reject_low 1 ALIGNMENT 371 Y12-19e09.p1k chr04 686 259 491893 492320 C 428 95.79 1171 reject_low 1 ALIGNMENT 926 Y12-19e10.q1k chr11 1141 32 548695 549815 C 1110 96.13 1256 accept 0 ALIGNMENT 986 Y12-19e10.p1k chr11 20 1172 544369 545542 F 1153 96.88 1174 accept 0 ALIGNMENT 773 Y12-19e11.p1k chr03 1029 43 194382 195358 C 987 94.02 1182 accept 0 ALIGNMENT 133 Y12-19e11.p1k chr10 314 849 62796 63331 F 536 75.75 1182 reject_low 1 ALIGNMENT 0 Y12-19e11.p1k chr10 107 313 62796 62795 F 207 0.00 1182 reject_low 1 ALIGNMENT 992 Y12-19e11.q1k chr03 36 1240 191311 192518 F 1205 95.60 1240 accept 0 ALIGNMENT 733 Y12-19e12.p1k chr11 892 22 113427 114298 C 871 96.21 1149 accept 0 ALIGNMENT 942 Y12-19e12.q1k chr11 35 1177 110588 111737 F 1143 94.84 1247 accept 0 ALIGNMENT 26 Y12-19e13.p1k chrm 377 320 15375 15432 C 58 84.48 1147 reject_low 1 ALIGNMENT 20 Y12-19e13.p1k chrm 977 594 14784 15167 C 384 72.92 1147 reject_low 1 ALIGNMENT 822 Y12-19e13.q1k chrm 39 1085 15251 16305 F 1047 96.75 1202 accept 0 ALIGNMENT 878 Y12-19e13.p1k chrm 1147 23 17171 18285 C 1125 97.33 1147 accept 0 ALIGNMENT 0 Y12-19e13.p1k chrm 319 62 15433 15432 C 258 0.00 1147 reject_low 1 ALIGNMENT 0 Y12-19e13.p1k chrm 593 378 15168 15374 C 216 0.00 1147 reject_low 1 ALIGNMENT 0 Y12-19e14.p1k chr09 460 62 434363 434362 C 399 0.00 1169 reject_low 18 ALIGNMENT 0 Y12-19e14.p1k chr05 514 62 64107 64106 C 453 0.00 1169 reject_low 19 ALIGNMENT 734 Y12-19e14.p1k chr15 35 1060 11060 12076 F 1026 91.33 1169 reject_low 11 ALIGNMENT 0 Y12-19e14.p1k chr03 386 62 308310 308309 C 325 0.00 1169 reject_low 13 ALIGNMENT 817 Y12-19e14.p1k chr12 1163 19 1062651 1063786 C 1145 91.53 1169 reject_low 2 ALIGNMENT 739 Y12-19e14.p1k chr04 926 29 1523198 1524100 C 898 94.43 1169 reject_low 10 ALIGNMENT 411 Y12-19e14.p1k chr08 390 1091 11795 12489 F 702 87.89 1169 reject_low 12 ALIGNMENT 319 Y12-19e14.p1k chr05 928 515 63696 64106 C 414 92.51 1169 reject_low 19 ALIGNMENT 960 Y12-19e14.q1k chr07 1208 33 9878 11061 C 1176 95.15 1271 accept 0 ALIGNMENT 359 Y12-19e14.p1k chr03 1145 387 307549 308309 C 759 83.79 1169 reject_low 13 ALIGNMENT 365 Y12-19e14.p1k chr07 993 405 1080211 1080790 C 589 88.46 1169 reject_low 15 ALIGNMENT 0 Y12-19e14.p1k chr16 62 129 7531 7530 F 68 0.00 1169 reject_low 14 ALIGNMENT 0 Y12-19e14.p1k chr13 129 62 923415 923414 C 68 0.00 1169 reject_low 17 ALIGNMENT 317 Y12-19e14.p1k chr15 1082 130 1082646 1083610 C 953 79.64 1169 reject_low 1 ALIGNMENT 358 Y12-19e14.p1k chr02 993 405 808950 809534 C 589 87.78 1169 reject_low 16 ALIGNMENT 0 Y12-19e14.p1k chr08 62 389 11795 11794 F 328 0.00 1169 reject_low 12 ALIGNMENT 643 Y12-19e14.q1k chr15 33 780 1070286 1071032 F 748 96.79 1271 reject_low 1 ALIGNMENT 0 Y12-19e14.p1k chr15 129 62 1083611 1083610 C 68 0.00 1169 reject_low 1 ALIGNMENT 479 Y12-19e14.p1k chr07 434 1163 6195 6917 F 730 89.45 1169 accept 0 ALIGNMENT 51 Y12-19e14.p1k chr03 809 723 290108 290193 C 87 86.21 1169 reject_low 21 ALIGNMENT 816 Y12-19e14.p1k chr02 29 1145 7109 8216 F 1117 92.12 1169 reject_low 8 ALIGNMENT 0 Y12-19e14.p1k chr01 62 528 176651 176650 F 467 0.00 1169 reject_low 20 ALIGNMENT 825 Y12-19e14.p1k chr14 1163 29 781652 782777 C 1135 91.98 1169 reject_low 5 ALIGNMENT 0 Y12-19e14.p1k chr07 62 433 6195 6194 F 372 0.00 1169 accept 0 ALIGNMENT 0 Y12-19e14.p1k chr03 722 62 290194 290193 C 661 0.00 1169 reject_low 21 ALIGNMENT 780 Y12-19e14.p1k chr01 35 1145 1311 2413 F 1111 91.27 1169 reject_low 9 ALIGNMENT 310 Y12-19e14.p1k chr09 1163 461 433660 434362 C 703 82.65 1169 reject_low 18 ALIGNMENT 0 Y12-19e14.p1k chr03 858 810 290109 290108 C 49 0.00 1169 reject_low 21 ALIGNMENT 828 Y12-19e14.p1k chr12 29 1145 12586 13693 F 1117 92.48 1169 reject_low 7 ALIGNMENT 203 Y12-19e14.p1k chr01 529 893 176651 177021 F 365 85.48 1169 reject_low 20 ALIGNMENT 844 Y12-19e14.p1k chr10 35 1163 8277 9403 F 1129 92.47 1169 reject_low 4 ALIGNMENT 302 Y12-19e14.p1k chr13 1091 130 922444 923414 C 962 79.00 1169 reject_low 17 ALIGNMENT 780 Y12-19e14.p1k chr11 19 1163 1296 2447 F 1145 90.22 1169 reject_low 6 ALIGNMENT 0 Y12-19e14.p1k chr07 404 62 1080791 1080790 C 343 0.00 1169 reject_low 15 ALIGNMENT 847 Y12-19e14.p1k chr09 35 1163 8294 9420 F 1129 92.56 1169 reject_low 3 ALIGNMENT 316 Y12-19e14.p1k chr16 130 1082 7531 8495 F 953 79.54 1169 reject_low 14 ALIGNMENT 0 Y12-19e14.q1k chr15 781 838 1071032 1071031 F 58 0.00 1271 reject_low 1 ALIGNMENT 0 Y12-19e14.p1k chr02 404 62 809535 809534 C 343 0.00 1169 reject_low 16 ALIGNMENT 73 Y12-19e15.p1k chr16 25 108 377920 378003 F 84 96.43 1153 reject_low 1 ALIGNMENT 1033 Y12-19e15.p1k chr02 25 1153 592339 593468 F 1129 98.23 1153 accept 0 ALIGNMENT 937 Y12-19e15.q1k chr02 1176 36 597296 598448 C 1141 95.09 1223 accept 0 ALIGNMENT 0 Y12-19e15.p1k chr16 109 864 378003 378002 F 756 0.00 1153 reject_low 1 ALIGNMENT 686 Y12-19e19.q1k chr12 54 959 10331 11245 F 906 93.05 1189 reject_low 7 ALIGNMENT 687 Y12-19e19.q1k chr12 925 54 1071642 1072517 C 872 94.04 1189 reject_low 11 ALIGNMENT 0 Y12-19e19.q1k chr08 483 619 4952 4971 F 137 0.00 1189 accept 0 ALIGNMENT 678 Y12-19e19.q1k chr15 915 54 1084616 1085481 C 862 94.08 1189 reject_low 13 ALIGNMENT 624 Y12-19e19.q1k chr08 952 54 556950 557835 C 899 91.43 1189 reject_low 14 ALIGNMENT 719 Y12-19e19.q1k chr05 915 54 570325 571162 C 862 96.06 1189 reject_low 8 ALIGNMENT 901 Y12-19e19.p1k chr08 1082 25 8158 9212 C 1058 95.75 1113 accept 0 ALIGNMENT 735 Y12-19e19.q1k chr16 54 915 5655 6525 F 862 95.82 1189 reject_low 6 ALIGNMENT 747 Y12-19e19.q1k chr14 54 959 5746 6664 F 906 94.70 1189 reject_low 2 ALIGNMENT 614 Y12-19e19.q1k chr02 54 916 4997 5846 F 863 92.24 1189 reject_low 16 ALIGNMENT 794 Y12-19e19.q1k chr10 54 866 6118 6930 F 813 99.63 1189 reject_low 4 ALIGNMENT 599 Y12-19e19.q1k chr12 954 54 1065117 1065965 C 901 91.34 1189 reject_low 15 ALIGNMENT 545 Y12-19e19.q1k chr16 630 54 942804 943380 C 577 98.79 1189 reject_low 17 ALIGNMENT 663 Y12-19e19.q1k chr06 54 954 3834 4724 F 901 92.56 1189 reject_low 12 ALIGNMENT 0 Y12-19e19.q1k chr05 743 863 6338 6337 F 121 0.00 1189 reject_low 18 ALIGNMENT 340 Y12-19e19.q1k chr08 54 482 4528 4951 F 429 94.64 1189 accept 0 ALIGNMENT 0 Y12-19e19.q1k chr08 645 863 4996 4995 F 219 0.00 1189 accept 0 ALIGNMENT 681 Y12-19e19.q1k chr04 989 54 1525375 1526316 C 936 92.20 1189 reject_low 1 ALIGNMENT 735 Y12-19e19.q1k chr07 915 54 1084352 1085222 C 862 95.82 1189 reject_low 5 ALIGNMENT 680 Y12-19e19.q1k chr13 54 954 4672 5580 F 901 92.90 1189 reject_low 10 ALIGNMENT 685 Y12-19e19.q1k chr12 54 954 4796 5701 F 901 93.12 1189 reject_low 9 ALIGNMENT 794 Y12-19e19.q1k chr09 54 866 6135 6947 F 813 99.63 1189 reject_low 3 ALIGNMENT 22 Y12-19e19.q1k chr08 620 644 4972 4996 F 25 96.00 1189 accept 0 ALIGNMENT 442 Y12-19e19.q1k chr05 54 742 5701 6338 F 689 91.29 1189 reject_low 18 ALIGNMENT 0 Y12-19e19.q1k chr16 863 631 942805 942804 C 233 0.00 1189 reject_low 17 ALIGNMENT 863 Y12-19e21.q1k chr03 1065 36 114643 115682 C 1030 96.21 1137 accept 0 ALIGNMENT 947 Y12-19e21.p1k chr03 17 1074 111026 112086 F 1058 97.54 1076 accept 0 ALIGNMENT 674 Y12-19e22.p1k chr13 26 1039 204837 205826 F 1014 91.81 1126 accept 0 ALIGNMENT 246 Y12-19e22.q1k chr13 446 29 210528 210945 C 418 87.08 1019 accept 0 ALIGNMENT 944 Y12-19e23.q1k chr08 1112 36 310257 311328 C 1077 97.03 1134 accept 0 ALIGNMENT 939 Y12-19e23.p1k chr08 29 1060 307146 308177 F 1032 98.35 1061 accept 0 ALIGNMENT 835 Y12-19e24.q1k chr04 1021 31 999179 1000159 C 991 96.27 1214 accept 0 ALIGNMENT 879 Y12-19e24.p1k chr04 20 1004 994258 995236 F 985 97.97 1082 accept 0 ALIGNMENT 849 Y12-19f01.q1k chr12 33 990 840169 841119 F 958 97.39 1331 accept 0 ALIGNMENT 721 Y12-19f01.p1k chr12 852 31 843466 844287 C 822 96.96 1266 accept 0 ALIGNMENT 950 Y12-19f02.q1k chr08 32 1127 103067 104147 F 1096 97.17 1270 accept 0 ALIGNMENT 853 Y12-19f02.p1k chr08 1047 19 108579 109590 C 1029 96.31 1289 accept 0 ALIGNMENT 359 Y12-19f03.q1k chr11 31 433 304157 304557 F 403 98.01 1257 reject_low 1 ALIGNMENT 0 Y12-19f03.q1k chr11 434 818 304557 304556 F 385 0.00 1257 reject_low 1 ALIGNMENT 543 Y12-19f03.p1k chr11 1023 262 309134 309891 C 762 92.39 1230 accept 0 ALIGNMENT 0 Y12-19f03.q1k chr11 62 399 304572 304571 F 338 0.00 1257 accept 0 ALIGNMENT 612 Y12-19f03.q1k chr11 400 1163 304572 305319 F 764 95.42 1257 accept 0 ALIGNMENT 729 Y12-19f05.q1k chr08 35 1074 404171 405208 F 1040 91.73 1302 accept 0 ALIGNMENT 1003 Y12-19f06.p1k chr12 1214 23 454451 455650 C 1192 95.81 1219 reject_low 1 ALIGNMENT 0 Y12-19f06.q1k chr12 685 862 472582 472581 F 178 0.00 1292 reject_low 5 ALIGNMENT 118 Y12-19f06.q1k chr12 566 684 485696 485814 F 119 99.16 1292 reject_low 7 ALIGNMENT 127 Y12-19f06.q1k chr12 566 699 489348 489481 F 134 97.76 1292 reject_low 3 ALIGNMENT 118 Y12-19f06.q1k chr12 566 684 472464 472582 F 119 99.16 1292 reject_low 5 ALIGNMENT 0 Y12-19f06.q1k chr06 198 62 31730 31729 C 137 0.00 1292 reject_low 4 ALIGNMENT 618 Y12-19f06.q1k chr12 36 684 468281 468930 F 649 99.38 1292 reject_low 2 ALIGNMENT 0 Y12-19f06.q1k chr12 62 565 472464 472463 F 504 0.00 1292 reject_low 5 ALIGNMENT 1003 Y12-19f06.p1k chr12 1214 23 463588 464787 C 1192 95.81 1219 accept 0 ALIGNMENT 118 Y12-19f06.q1k chr12 566 684 482044 482162 F 119 99.16 1292 reject_low 6 ALIGNMENT 0 Y12-19f06.q1k chr12 62 565 482044 482043 F 504 0.00 1292 reject_low 6 ALIGNMENT 854 Y12-19f06.q1k chr12 36 1069 459144 460200 F 1034 95.26 1292 accept 0 ALIGNMENT 94 Y12-19f06.q1k chr06 306 199 31622 31729 C 108 98.15 1292 reject_low 4 ALIGNMENT 0 Y12-19f06.q1k chr12 685 862 482162 482161 F 178 0.00 1292 reject_low 6 ALIGNMENT 0 Y12-19f06.q1k chr12 62 565 485696 485695 F 504 0.00 1292 reject_low 7 ALIGNMENT 0 Y12-19f06.q1k chr12 685 862 468930 468929 F 178 0.00 1292 reject_low 2 ALIGNMENT 0 Y12-19f06.q1k chr12 685 862 485814 485813 F 178 0.00 1292 reject_low 7 ALIGNMENT 0 Y12-19f06.q1k chr12 62 565 489348 489347 F 504 0.00 1292 reject_low 3 ALIGNMENT 0 Y12-19f06.q1k chr12 700 862 489481 489480 F 163 0.00 1292 reject_low 3 ALIGNMENT 0 Y12-19f06.q1k chr06 862 307 31623 31622 C 556 0.00 1292 reject_low 4 ALIGNMENT 603 Y12-19f07.q1k chr07 34 865 24100 24938 F 832 90.99 1131 accept 0 ALIGNMENT 193 Y12-19f07.q1k chr06 719 40 254179 254864 C 680 76.32 1131 reject_low 1 ALIGNMENT 1029 Y12-19f07.p1k chr07 1207 23 27440 28637 C 1185 96.54 1228 accept 0 ALIGNMENT 871 Y12-19f09.p1k chr04 1061 16 643020 644062 C 1046 95.79 1231 accept 0 ALIGNMENT 979 Y12-19f09.q1k chr04 40 1216 639535 640720 F 1177 96.01 1267 accept 0 ALIGNMENT 929 Y12-19f10.q1k chr13 36 1167 465931 467077 F 1132 95.67 1254 accept_chi 1 ALIGNMENT 993 Y12-19f10.p1k chr10 19 1188 184321 185497 F 1170 95.98 1197 accept_chi 0 ALIGNMENT 1057 Y12-19f11.q1k chr09 1256 35 221568 222790 C 1222 95.99 1269 accept 0 ALIGNMENT 731 Y12-19f11.p1k chr09 17 980 219029 219994 F 964 93.26 1125 accept 0 ALIGNMENT 301 Y12-19f11.q1k chr05 512 1222 322856 323564 F 711 81.01 1269 reject_low 1 ALIGNMENT 0 Y12-19f11.q1k chr05 62 511 322856 322855 F 450 0.00 1269 reject_low 1 ALIGNMENT 948 Y12-19f12.q1k chr16 1155 36 249607 250737 C 1120 96.25 1251 accept 0 ALIGNMENT 323 Y12-19f12.p1k chr16 70 630 244272 244842 F 561 86.81 1187 accept 0 ALIGNMENT 859 Y12-19f13.p1k chr02 20 1023 515628 516613 F 1004 96.91 1227 accept 0 ALIGNMENT 1031 Y12-19f13.q1k chr02 1226 43 519173 520364 C 1184 97.04 1266 accept 0 ALIGNMENT 984 Y12-19f14.p1k chr14 21 1153 215880 217002 F 1133 97.26 1173 accept 0 ALIGNMENT 953 Y12-19f14.q1k chr14 1173 27 220386 221548 C 1147 96.16 1241 accept 0 ALIGNMENT 887 Y12-19f16.q1k chr11 1128 32 242767 243878 C 1097 93.89 1244 accept 0 ALIGNMENT 0 Y12-19f16.p1k chr05 62 123 219947 219946 F 62 0.00 1159 reject_low 4 ALIGNMENT 0 Y12-19f16.p1k chr07 877 249 70164 70163 C 629 0.00 1159 reject_low 3 ALIGNMENT 0 Y12-19f16.p1k chr15 249 877 428028 428027 F 629 0.00 1159 reject_low 2 ALIGNMENT 22 Y12-19f16.p1k chr01 158 122 116483 116519 C 37 89.19 1159 reject_low 8 ALIGNMENT 0 Y12-19f16.p1k chr04 877 163 604238 604237 C 715 0.00 1159 reject_low 7 ALIGNMENT 0 Y12-19f16.p1k chr01 121 62 116520 116519 C 60 0.00 1159 reject_low 8 ALIGNMENT 0 Y12-19f16.p1k chr04 126 62 604273 604272 C 65 0.00 1159 reject_low 7 ALIGNMENT 0 Y12-19f16.p1k chr07 877 163 70163 70162 C 715 0.00 1159 reject_low 5 ALIGNMENT 0 Y12-19f16.p1k chr04 877 161 1291120 1291119 C 717 0.00 1159 reject_low 11 ALIGNMENT 23 Y12-19f16.p1k chr04 127 158 834013 834044 F 32 93.75 1159 reject_low 10 ALIGNMENT 20 Y12-19f16.p1k chr04 160 136 1291119 1291143 C 25 96.00 1159 reject_low 11 ALIGNMENT 0 Y12-19f16.p1k chr06 62 125 202476 202475 F 64 0.00 1159 reject_low 9 ALIGNMENT 0 Y12-19f16.p1k chr15 62 126 427907 427906 F 65 0.00 1159 reject_low 2 ALIGNMENT 30 Y12-19f16.p1k chr07 162 124 70162 70200 C 39 94.87 1159 reject_low 5 ALIGNMENT 25 Y12-19f16.p1k chr15 127 248 427907 428028 F 122 76.23 1159 reject_low 2 ALIGNMENT 0 Y12-19f16.p1k chr15 62 123 428003 428002 F 62 0.00 1159 reject_low 6 ALIGNMENT 272 Y12-19f16.p1k chr11 56 346 240234 240524 F 291 99.66 1159 reject_low 1 ALIGNMENT 0 Y12-19f16.p1k chr15 177 877 428055 428054 F 701 0.00 1159 reject_low 6 ALIGNMENT 0 Y12-19f16.p1k chr11 347 877 240524 240523 F 531 0.00 1159 reject_low 1 ALIGNMENT 32 Y12-19f16.p1k chr05 124 177 219947 220000 F 54 88.89 1159 reject_low 4 ALIGNMENT 0 Y12-19f16.p1k chr04 135 62 1291144 1291143 C 74 0.00 1159 reject_low 11 ALIGNMENT 24 Y12-19f16.p1k chr15 124 176 428003 428055 F 53 84.91 1159 reject_low 6 ALIGNMENT 0 Y12-19f16.p1k chr06 150 877 202499 202498 F 728 0.00 1159 reject_low 9 ALIGNMENT 0 Y12-19f16.p1k chr07 194 62 70217 70216 C 133 0.00 1159 reject_low 3 ALIGNMENT 0 Y12-19f16.p1k chr01 877 159 116484 116483 C 719 0.00 1159 reject_low 8 ALIGNMENT 23 Y12-19f16.p1k chr06 126 149 202476 202499 F 24 100.00 1159 reject_low 9 ALIGNMENT 21 Y12-19f16.p1k chr07 248 195 70163 70216 C 54 81.48 1159 reject_low 3 ALIGNMENT 0 Y12-19f16.p1k chr07 123 62 70201 70200 C 62 0.00 1159 reject_low 5 ALIGNMENT 28 Y12-19f16.p1k chr04 162 127 604237 604272 C 36 94.44 1159 reject_low 7 ALIGNMENT 0 Y12-19f16.p1k chr05 178 877 220000 219999 F 700 0.00 1159 reject_low 4 ALIGNMENT 0 Y12-19f16.p1k chr04 62 126 834013 834012 F 65 0.00 1159 reject_low 10 ALIGNMENT 0 Y12-19f16.p1k chr04 159 877 834044 834043 F 719 0.00 1159 reject_low 10 ALIGNMENT 983 Y12-19f16.p1k chr11 33 1150 240210 241334 F 1118 97.32 1159 accept 0 ALIGNMENT 415 Y12-19f17.q1k chr16 790 159 218338 218967 C 632 89.08 1062 accept 0 ALIGNMENT 916 Y12-19f17.p1k chr16 31 1085 212851 213900 F 1055 97.06 1189 accept 0 ALIGNMENT 0 Y12-19f18.q1k chr16 62 989 856399 856398 F 928 0.00 1241 reject_low 23 ALIGNMENT 0 Y12-19f18.p1k chr03 341 62 149774 149773 C 280 0.00 1150 reject_low 24 ALIGNMENT 0 Y12-19f18.p1k chr02 329 62 259886 259885 C 268 0.00 1150 reject_low 33 ALIGNMENT 0 Y12-19f18.q1k chr07 834 749 735988 735987 C 86 0.00 1241 reject_low 11 ALIGNMENT 0 Y12-19f18.q1k chr16 834 739 856552 856551 C 96 0.00 1241 reject_low 14 ALIGNMENT 286 Y12-19f18.q1k chr14 748 409 726235 726575 C 340 96.18 1241 reject_low 20 ALIGNMENT 47 Y12-19f18.p1k chr02 585 330 265212 265470 C 256 76.95 1150 reject_low 35 ALIGNMENT 0 Y12-19f18.q1k chr10 816 817 541006 541343 C 0 0.00 1241 reject_bad_break 0 ALIGNMENT 299 Y12-19f18.q1k chr07 409 748 319426 319765 F 340 97.35 1241 reject_low 15 ALIGNMENT 58 Y12-19f18.p1k chr14 603 330 524763 525041 C 274 77.74 1150 reject_low 30 ALIGNMENT 0 Y12-19f18.p1k chr04 604 814 645797 645796 F 211 0.00 1150 reject_low 27 ALIGNMENT 0 Y12-19f18.p1k chr04 62 329 645519 645518 F 268 0.00 1150 reject_low 27 ALIGNMENT 0 Y12-19f18.q1k chr07 62 408 319426 319425 F 347 0.00 1241 reject_low 15 ALIGNMENT 0 Y12-19f18.p1k chr03 62 329 124153 124152 F 268 0.00 1150 reject_low 47 ALIGNMENT 0 Y12-19f18.p1k chr14 329 62 525042 525041 C 268 0.00 1150 reject_low 30 ALIGNMENT 0 Y12-19f18.p1k chr15 602 814 300984 300983 F 213 0.00 1150 reject_low 45 ALIGNMENT 0 Y12-19f18.p1k chr07 329 62 541668 541667 C 268 0.00 1150 reject_low 38 ALIGNMENT 0 Y12-19f18.q1k chr09 834 749 210306 210305 C 86 0.00 1241 reject_low 6 ALIGNMENT 0 Y12-19f18.p1k chr14 586 814 102472 102471 F 229 0.00 1150 reject_low 37 ALIGNMENT 0 Y12-19f18.q1k chr11 62 408 202290 202289 F 347 0.00 1241 reject_low 7 ALIGNMENT 50 Y12-19f18.p1k chr02 585 330 259627 259885 C 256 77.34 1150 reject_low 33 ALIGNMENT 0 Y12-19f18.p1k chr04 329 62 1151339 1151338 C 268 0.00 1150 reject_low 50 ALIGNMENT 0 Y12-19f18.p1k chr10 814 586 472429 472428 C 229 0.00 1150 reject_low 39 ALIGNMENT 0 Y12-19f18.q1k chr07 408 62 712550 712549 C 347 0.00 1241 reject_low 4 ALIGNMENT 44 Y12-19f18.p1k chr03 585 330 151568 151826 C 256 76.56 1150 reject_low 42 ALIGNMENT 0 Y12-19f18.q1k chr04 834 749 668092 668091 C 86 0.00 1241 reject_low 16 ALIGNMENT 0 Y12-19f18.q1k chr16 408 62 856882 856881 C 347 0.00 1241 reject_low 14 ALIGNMENT 0 Y12-19f18.p1k chr14 814 604 524764 524763 C 211 0.00 1150 reject_low 30 ALIGNMENT 0 Y12-19f18.p1k chr14 814 604 519198 519197 C 211 0.00 1150 reject_low 29 ALIGNMENT 321 Y12-19f18.q1k chr01 748 408 182614 182954 C 341 99.41 1241 reject_low 1 ALIGNMENT 0 Y12-19f18.q1k chr07 749 834 319765 319764 F 86 0.00 1241 reject_low 15 ALIGNMENT 0 Y12-19f18.q1k chr09 408 62 210645 210644 C 347 0.00 1241 reject_low 6 ALIGNMENT 0 Y12-19f18.q1k chr08 62 408 146324 146323 F 347 0.00 1241 reject_low 13 ALIGNMENT 0 Y12-19f18.q1k chr04 408 62 668432 668431 C 347 0.00 1241 reject_low 16 ALIGNMENT 0 Y12-19f18.q1k chr11 749 834 202629 202628 F 86 0.00 1241 reject_low 7 ALIGNMENT 49 Y12-19f18.q1k chr14 821 934 726624 726736 F 114 84.21 1241 reject_low 21 ALIGNMENT 287 Y12-19f18.q1k chr04 748 408 1023131 1023472 C 341 96.19 1241 reject_low 19 ALIGNMENT 0 Y12-19f18.p1k chr03 62 340 151475 151474 F 279 0.00 1150 reject_low 52 ALIGNMENT 41 Y12-19f18.p1k chr10 603 487 538050 538167 C 117 82.05 1150 reject_low 32 ALIGNMENT 0 Y12-19f18.p1k chr04 814 586 1151083 1151082 C 229 0.00 1150 reject_low 50 ALIGNMENT 23 Y12-19f18.q1k chr10 990 1041 541191 541242 F 52 82.69 1241 reject_low 22 ALIGNMENT 0 Y12-19f18.q1k chr16 834 749 769318 769317 C 86 0.00 1241 reject_low 12 ALIGNMENT 0 Y12-19f18.p1k chr02 483 814 258840 258839 F 332 0.00 1150 reject_low 46 ALIGNMENT 0 Y12-19f18.p1k chr14 329 62 519476 519475 C 268 0.00 1150 reject_low 29 ALIGNMENT 37 Y12-19f18.q1k chr16 990 1077 856399 856487 F 88 82.95 1241 reject_low 23 ALIGNMENT 176 Y12-19f18.p1k chr10 602 313 543395 543689 C 290 90.34 1150 reject_low 22 ALIGNMENT 59 Y12-19f18.q1k chr10 818 749 541342 541411 C 70 97.14 1241|2,0 reject_bad_break 0 ALIGNMENT 0 Y12-19f18.p1k chr12 329 62 651138 651137 C 268 0.00 1150 reject_low 28 ALIGNMENT 0 Y12-19f18.q1k chr14 834 613 546562 546561 C 222 0.00 1241 reject_low 51 ALIGNMENT 0 Y12-19f18.p1k chr02 814 586 265213 265212 C 229 0.00 1150 reject_low 35 ALIGNMENT 0 Y12-19f18.p1k chr14 62 329 102214 102213 F 268 0.00 1150 reject_low 37 ALIGNMENT 0 Y12-19f18.q1k chr01 834 749 182615 182614 C 86 0.00 1241 reject_low 1 ALIGNMENT 0 Y12-19f18.p1k chr12 329 62 593459 593458 C 268 0.00 1150 reject_low 31 ALIGNMENT 604 Y12-19f18.p1k chr10 20 671 537364 538016 F 652 99.08 1150|0,2 reject_bad_break 0 ALIGNMENT 0 Y12-19f18.p1k chr02 329 62 265471 265470 C 268 0.00 1150 reject_low 35 ALIGNMENT 0 Y12-19f18.p1k chr12 62 329 215103 215102 F 268 0.00 1150 reject_low 43 ALIGNMENT 0 Y12-19f18.q1k chr12 408 62 374340 374339 C 347 0.00 1241 reject_low 18 ALIGNMENT 23 Y12-19f18.p1k chr03 341 382 151475 151517 F 42 88.10 1150 reject_low 52 ALIGNMENT 301 Y12-19f18.q1k chr04 409 748 945949 946289 F 340 97.65 1241 reject_low 9 ALIGNMENT 0 Y12-19f18.p1k chr03 586 814 143026 143025 F 229 0.00 1150 reject_low 49 ALIGNMENT 42 Y12-19f18.p1k chr10 579 330 483606 483864 C 250 76.00 1150 reject_low 44 ALIGNMENT 0 Y12-19f18.q1k chr07 408 62 736328 736327 C 347 0.00 1241 reject_low 11 ALIGNMENT 357 Y12-19f18.q1k chr10 408 40 541407 541775 C 369 99.73 1241 reject_bad_break 0 ALIGNMENT 0 Y12-19f18.q1k chr14 834 749 726236 726235 C 86 0.00 1241 reject_low 20 ALIGNMENT 0 Y12-19f18.p1k chr12 814 604 650860 650859 C 211 0.00 1150 reject_low 28 ALIGNMENT 0 Y12-19f18.p1k chr03 329 62 151827 151826 C 268 0.00 1150 reject_low 42 ALIGNMENT 47 Y12-19f18.p1k chr14 330 585 96632 96890 F 256 76.95 1150 reject_low 36 ALIGNMENT 0 Y12-19f18.q1k chr02 408 62 198058 198057 C 347 0.00 1241 reject_low 17 ALIGNMENT 0 Y12-19f18.q1k chr10 748 409 541412 541406 C 340 0.00 1241 reject_bad_break 0 ALIGNMENT 0 Y12-19f18.q1k chr14 834 751 546738 546737 C 84 0.00 1241 reject_low 2 ALIGNMENT 320 Y12-19f18.q1k chr11 409 748 202290 202629 F 340 99.41 1241 reject_low 7 ALIGNMENT 0 Y12-19f18.q1k chr04 62 408 945949 945948 F 347 0.00 1241 reject_low 9 ALIGNMENT 58 Y12-19f18.p1k chr14 603 330 519197 519475 C 274 77.74 1150 reject_low 29 ALIGNMENT 289 Y12-19f18.q1k chr12 750 409 373998 374339 C 342 96.49 1241 reject_low 18 ALIGNMENT 0 Y12-19f18.p1k chr10 814 604 538051 538050 C 211 0.00 1150 reject_low 32 ALIGNMENT 0 Y12-19f18.q1k chr07 834 749 712211 712210 C 86 0.00 1241 reject_low 4 ALIGNMENT 320 Y12-19f18.q1k chr09 748 409 210305 210644 C 340 99.41 1241 reject_low 6 ALIGNMENT 0 Y12-19f18.p1k chr10 814 603 543396 543395 C 212 0.00 1150 reject_low 22 ALIGNMENT 58 Y12-19f18.p1k chr04 330 603 645519 645797 F 274 77.74 1150 reject_low 27 ALIGNMENT 0 Y12-19f18.p1k chr03 814 609 149509 149508 C 206 0.00 1150 reject_low 24 ALIGNMENT 0 Y12-19f18.p1k chr14 62 329 96632 96631 F 268 0.00 1150 reject_low 36 ALIGNMENT 58 Y12-19f18.p1k chr01 330 603 160261 160542 F 274 77.74 1150 reject_low 25 ALIGNMENT 0 Y12-19f18.q1k chr09 834 749 205218 205217 C 86 0.00 1241 reject_low 5 ALIGNMENT 38 Y12-19f18.p1k chr15 363 601 300739 300984 F 239 76.15 1150 reject_low 45 ALIGNMENT 298 Y12-19f18.q1k chr04 748 409 668091 668431 C 340 97.35 1241 reject_low 16 ALIGNMENT 58 Y12-19f18.p1k chr12 603 330 650859 651137 C 274 77.74 1150 reject_low 28 ALIGNMENT 0 Y12-19f18.p1k chr10 312 62 543690 543689 C 251 0.00 1150 reject_low 22 ALIGNMENT 0 Y12-19f18.p1k chr10 814 580 483607 483606 C 235 0.00 1150 reject_low 44 ALIGNMENT 46 Y12-19f18.p1k chr10 585 330 472428 472692 C 256 76.56 1150 reject_low 39 ALIGNMENT 45 Y12-19f18.p1k chr12 330 585 818095 818352 F 256 76.56 1150 reject_low 40 ALIGNMENT 0 Y12-19f18.p1k chr10 329 62 472693 472692 C 268 0.00 1150 reject_low 39 ALIGNMENT 0 Y12-19f18.q1k chr15 408 62 854613 854612 C 347 0.00 1241 reject_low 8 ALIGNMENT 301 Y12-19f18.q1k chr15 750 409 854271 854612 C 342 97.66 1241 reject_low 8 ALIGNMENT 0 Y12-19f18.p1k chr12 586 814 215367 215366 F 229 0.00 1150 reject_low 43 ALIGNMENT 0 Y12-19f18.p1k chr12 329 62 656724 656723 C 268 0.00 1150 reject_low 41 ALIGNMENT 0 Y12-19f18.q1k chr15 834 751 854272 854271 C 84 0.00 1241 reject_low 8 ALIGNMENT 0 Y12-19f18.p1k chr01 604 814 160542 160541 F 211 0.00 1150 reject_low 25 ALIGNMENT 0 Y12-19f18.q1k chr07 408 62 707539 707538 C 347 0.00 1241 reject_low 3 ALIGNMENT 0 Y12-19f18.p1k chr10 486 62 538168 538167 C 425 0.00 1150 reject_low 32 ALIGNMENT 39 Y12-19f18.p1k chr02 330 482 258687 258840 F 153 77.78 1150 reject_low 46 ALIGNMENT 57 Y12-19f18.p1k chr12 603 330 593180 593458 C 274 77.74 1150 reject_low 31 ALIGNMENT 23 Y12-19f18.q1k chr14 612 501 546561 546674 C 112 75.89 1241 reject_low 51 ALIGNMENT 320 Y12-19f18.q1k chr07 748 409 707199 707538 C 340 99.41 1241 reject_low 3 ALIGNMENT 0 Y12-19f18.q1k chr02 834 749 197718 197717 C 86 0.00 1241 reject_low 17 ALIGNMENT 0 Y12-19f18.q1k chr10 62 821 541019 541018 F 760 0.00 1241 reject_low 22 ALIGNMENT 38 Y12-19f18.q1k chr10 822 934 541019 541131 F 113 79.65 1241 reject_low 22 ALIGNMENT 320 Y12-19f18.q1k chr07 748 409 712210 712549 C 340 99.41 1241 reject_low 4 ALIGNMENT 0 Y12-19f18.q1k chr08 750 834 146665 146664 F 85 0.00 1241 reject_low 13 ALIGNMENT 202 Y12-19f18.q1k chr10 1241 814 540577 541008 C 428 85.28 1241|0,3 reject_bad_break 0 ALIGNMENT 0 Y12-19f18.p1k chr12 814 583 656467 656466 C 232 0.00 1150 reject_low 41 ALIGNMENT 0 Y12-19f18.p1k chr03 586 814 124411 124410 F 229 0.00 1150 reject_low 47 ALIGNMENT 0 Y12-19f18.p1k chr13 62 329 357026 357025 F 268 0.00 1150 reject_low 34 ALIGNMENT 0 Y12-19f18.p1k chr03 62 363 142803 142802 F 302 0.00 1150 reject_low 49 ALIGNMENT 0 Y12-19f18.q1k chr04 407 62 1023473 1023472 C 346 0.00 1241 reject_low 19 ALIGNMENT 0 Y12-19f18.p1k chr12 814 604 593181 593180 C 211 0.00 1150 reject_low 31 ALIGNMENT 35 Y12-19f18.p1k chr03 330 585 124153 124411 F 256 75.39 1150 reject_low 47 ALIGNMENT 0 Y12-19f18.p1k chr03 814 586 151569 151568 C 229 0.00 1150 reject_low 42 ALIGNMENT 0 Y12-19f18.q1k chr14 500 62 546675 546674 C 439 0.00 1241 reject_low 51 ALIGNMENT 0 Y12-19f18.p1k chr12 586 814 818352 818351 F 229 0.00 1150 reject_low 40 ALIGNMENT 0 Y12-19f18.q1k chr14 408 62 726576 726575 C 347 0.00 1241 reject_low 20 ALIGNMENT 0 Y12-19f18.p1k chr02 814 586 259628 259627 C 229 0.00 1150 reject_low 33 ALIGNMENT 301 Y12-19f18.q1k chr16 748 409 769317 769657 C 340 97.65 1241 reject_low 12 ALIGNMENT 319 Y12-19f18.q1k chr14 750 409 546737 547078 C 342 99.12 1241 reject_low 2 ALIGNMENT 0 Y12-19f18.q1k chr04 834 749 1023132 1023131 C 86 0.00 1241 reject_low 19 ALIGNMENT 0 Y12-19f18.p1k chr12 62 329 818095 818094 F 268 0.00 1150 reject_low 40 ALIGNMENT 30 Y12-19f18.p1k chr04 585 330 1151082 1151338 C 256 76.17 1150 reject_low 50 ALIGNMENT 0 Y12-19f18.p1k chr03 604 814 168895 168894 F 211 0.00 1150 reject_low 26 ALIGNMENT 0 Y12-19f18.q1k chr07 834 749 707200 707199 C 86 0.00 1241 reject_low 3 ALIGNMENT 0 Y12-19f18.p1k chr01 62 329 160261 160260 F 268 0.00 1150 reject_low 25 ALIGNMENT 0 Y12-19f18.q1k chr05 749 834 434967 434966 F 86 0.00 1241 reject_low 10 ALIGNMENT 58 Y12-19f18.p1k chr03 330 603 168617 168895 F 274 77.74 1150 reject_low 26 ALIGNMENT 0 Y12-19f18.p1k chr03 383 814 151517 151516 F 432 0.00 1150 reject_low 52 ALIGNMENT 295 Y12-19f18.q1k chr02 748 409 197717 198057 C 340 97.06 1241 reject_low 17 ALIGNMENT 35 Y12-19f18.p1k chr03 364 585 142803 143026 F 222 76.13 1150 reject_low 49 ALIGNMENT 0 Y12-19f18.p1k chr04 329 62 803209 803208 C 268 0.00 1150 reject_low 48 ALIGNMENT 0 Y12-19f18.p1k chr10 329 62 483865 483864 C 268 0.00 1150 reject_low 44 ALIGNMENT 0 Y12-19f18.q1k chr14 408 62 547079 547078 C 347 0.00 1241 reject_low 2 ALIGNMENT 299 Y12-19f18.q1k chr08 409 749 146324 146665 F 341 97.36 1241 reject_low 13 ALIGNMENT 301 Y12-19f18.q1k chr05 409 748 434627 434967 F 340 97.65 1241 reject_low 10 ALIGNMENT 0 Y12-19f18.p1k chr04 814 586 802952 802951 C 229 0.00 1150 reject_low 48 ALIGNMENT 71 Y12-19f18.p1k chr03 608 342 149508 149773 C 267 79.78 1150 reject_low 24 ALIGNMENT 0 Y12-19f18.q1k chr14 62 820 726624 726623 F 759 0.00 1241 reject_low 21 ALIGNMENT 395 Y12-19f18.p1k chr10 667 1150 538349 538835 F 484 95.04 1150|3,0 reject_bad_break 0 ALIGNMENT 0 Y12-19f18.p1k chr15 62 362 300739 300738 F 301 0.00 1150 reject_low 45 ALIGNMENT 0 Y12-19f18.q1k chr05 62 408 434627 434626 F 347 0.00 1241 reject_low 10 ALIGNMENT 0 Y12-19f18.p1k chr03 62 329 168617 168616 F 268 0.00 1150 reject_low 26 ALIGNMENT 43 Y12-19f18.p1k chr12 330 585 215103 215367 F 256 76.17 1150 reject_low 43 ALIGNMENT 50 Y12-19f18.p1k chr13 330 585 357026 357284 F 256 77.34 1150 reject_low 34 ALIGNMENT 301 Y12-19f18.q1k chr07 748 409 735987 736327 C 340 97.65 1241 reject_low 11 ALIGNMENT 0 Y12-19f18.p1k chr02 62 329 258687 258686 F 268 0.00 1150 reject_low 46 ALIGNMENT 320 Y12-19f18.q1k chr09 748 409 205217 205556 C 340 99.41 1241 reject_low 5 ALIGNMENT 0 Y12-19f18.p1k chr13 586 814 357284 357283 F 229 0.00 1150 reject_low 34 ALIGNMENT 0 Y12-19f18.q1k chr04 749 834 946289 946288 F 86 0.00 1241 reject_low 9 ALIGNMENT 0 Y12-19f18.p1k chr10 670 669 538015 538351 F 0 0.00 1150 reject_bad_break 0 ALIGNMENT 47 Y12-19f18.p1k chr14 330 585 102214 102472 F 256 76.95 1150 reject_low 37 ALIGNMENT 0 Y12-19f18.q1k chr10 935 989 541132 541190 F 55 0.00 1241 reject_low 22 ALIGNMENT 0 Y12-19f18.q1k chr01 407 62 182955 182954 C 346 0.00 1241 reject_low 1 ALIGNMENT 300 Y12-19f18.q1k chr16 738 409 856551 856881 C 330 98.48 1241 reject_low 14 ALIGNMENT 0 Y12-19f18.q1k chr16 408 62 769658 769657 C 347 0.00 1241 reject_low 12 ALIGNMENT 35 Y12-19f18.p1k chr04 585 330 802951 803208 C 256 75.39 1150 reject_low 48 ALIGNMENT 0 Y12-19f18.q1k chr12 834 751 373999 373998 C 84 0.00 1241 reject_low 18 ALIGNMENT 0 Y12-19f18.p1k chr14 586 814 96890 96889 F 229 0.00 1150 reject_low 36 ALIGNMENT 45 Y12-19f18.p1k chr12 582 330 656466 656723 C 253 76.68 1150 reject_low 41 ALIGNMENT 0 Y12-19f18.q1k chr09 408 62 205557 205556 C 347 0.00 1241 reject_low 5 ALIGNMENT 46 Y12-19f18.p1k chr07 585 330 541403 541667 C 256 76.56 1150 reject_low 38 ALIGNMENT 0 Y12-19f18.p1k chr07 814 586 541404 541403 C 229 0.00 1150 reject_low 38 ALIGNMENT 26 Y12-19f20.p1k chr12 808 913 598766 598870 F 106 77.36 1132 reject_low 1 ALIGNMENT 64 Y12-19f20.p1k chr04 624 710 1017192 1017277 F 87 91.95 1132 reject_low 10 ALIGNMENT 0 Y12-19f20.p1k chr07 62 624 401521 401520 F 563 0.00 1132 reject_low 8 ALIGNMENT 0 Y12-19f20.p1k chr12 633 62 797250 797249 C 572 0.00 1132 reject_low 17 ALIGNMENT 79 Y12-19f20.p1k chr03 622 706 82449 82533 F 85 97.65 1132 reject_low 5 ALIGNMENT 74 Y12-19f20.p1k chr05 706 633 354929 355002 C 74 100.00 1132 reject_low 15 ALIGNMENT 29 Y12-19f20.p1k chr15 977 1048 595020 595092 F 72 81.94 1132 reject_low 2 ALIGNMENT 0 Y12-19f20.p1k chr09 834 707 197589 197588 C 128 0.00 1132 reject_low 18 ALIGNMENT 0 Y12-19f20.p1k chr10 62 625 115926 115925 F 564 0.00 1132 reject_low 9 ALIGNMENT 0 Y12-19f20.p1k chr05 834 707 354930 354929 C 128 0.00 1132 reject_low 15 ALIGNMENT 0 Y12-19f20.p1k chr05 632 62 355003 355002 C 571 0.00 1132 reject_low 15 ALIGNMENT 0 Y12-19f20.p1k chr09 632 62 197662 197661 C 571 0.00 1132 reject_low 18 ALIGNMENT 75 Y12-19f20.p1k chr10 626 706 115926 116006 F 81 97.53 1132 reject_low 9 ALIGNMENT 0 Y12-19f20.p1k chr05 62 628 487321 487320 F 567 0.00 1132 reject_low 11 ALIGNMENT 0 Y12-19f20.p1k chr03 707 834 82533 82532 F 128 0.00 1132 reject_low 5 ALIGNMENT 0 Y12-19f20.p1k chr07 706 834 401601 401600 F 129 0.00 1132 reject_low 8 ALIGNMENT 0 Y12-19f20.p1k chr02 632 62 645235 645234 C 571 0.00 1132 reject_low 13 ALIGNMENT 0 Y12-19f20.p1k chr04 62 623 1017192 1017191 F 562 0.00 1132 reject_low 10 ALIGNMENT 0 Y12-19f20.p1k chr02 834 707 645162 645161 C 128 0.00 1132 reject_low 13 ALIGNMENT 59 Y12-19f20.p1k chr09 706 633 197588 197661 C 74 93.24 1132 reject_low 18 ALIGNMENT 75 Y12-19f20.p1k chr11 629 706 141018 141095 F 78 98.72 1132 reject_low 12 ALIGNMENT 144 Y12-19f20.p1k chr07 1082 865 535547 535763 C 218 89.91 1132|0,3 accept_trans 0 ALIGNMENT 0 Y12-19f20.p1k chr15 62 976 595020 595019 F 915 0.00 1132 reject_low 2 ALIGNMENT 75 Y12-19f20.p1k chr07 625 705 401521 401601 F 81 97.53 1132 reject_low 8 ALIGNMENT 76 Y12-19f20.p1k chr09 714 633 370405 370486 C 82 97.56 1132 reject_low 4 ALIGNMENT 0 Y12-19f20.p1k chr09 834 715 370406 370405 C 120 0.00 1132 reject_low 4 ALIGNMENT 0 Y12-19f20.p1k chr16 706 834 210262 210261 F 129 0.00 1132 reject_low 6 ALIGNMENT 0 Y12-19f20.p1k chr03 62 621 82449 82448 F 560 0.00 1132 reject_low 5 ALIGNMENT 26 Y12-19f20.p1k chr15 1048 977 113353 113425 C 72 80.56 1132 reject_low 3 ALIGNMENT 0 Y12-19f20.p1k chr05 632 62 177171 177170 C 571 0.00 1132 reject_low 14 ALIGNMENT 74 Y12-19f20.p1k chr02 706 633 645161 645234 C 74 100.00 1132 reject_low 13 ALIGNMENT 0 Y12-19f20.p1k chr11 62 628 141018 141017 F 567 0.00 1132 reject_low 12 ALIGNMENT 0 Y12-19f20.p1k chr05 834 707 177098 177097 C 128 0.00 1132 reject_low 14 ALIGNMENT 0 Y12-19f20.p1k chr11 707 834 141095 141094 F 128 0.00 1132 reject_low 12 ALIGNMENT 77 Y12-19f20.p1k chr13 706 624 290799 290881 C 83 97.59 1132 reject_low 7 ALIGNMENT 0 Y12-19f20.p1k chr10 707 834 116006 116005 F 128 0.00 1132 reject_low 9 ALIGNMENT 0 Y12-19f20.p1k chr13 623 62 290882 290881 C 562 0.00 1132 reject_low 7 ALIGNMENT 0 Y12-19f20.p1k chr15 976 62 113426 113425 C 915 0.00 1132 reject_low 3 ALIGNMENT 0 Y12-19f20.p1k chr09 632 62 370487 370486 C 571 0.00 1132 reject_low 4 ALIGNMENT 0 Y12-19f20.p1k chr13 834 707 290800 290799 C 128 0.00 1132 reject_low 7 ALIGNMENT 0 Y12-19f20.p1k chr12 62 807 598766 598765 F 746 0.00 1132 reject_low 1 ALIGNMENT 75 Y12-19f20.p1k chr05 629 706 487321 487398 F 78 98.72 1132 reject_low 11 ALIGNMENT 813 Y12-19f20.p1k chr07 869 23 541690 542537 C 847 99.65 1132|2,0 accept_trans 0 ALIGNMENT 0 Y12-19f20.p1k chr07 867 868 535761 541691 C 0 0.00 1132 accept_trans 0 ALIGNMENT 73 Y12-19f20.p1k chr07 705 633 328586 328658 C 73 100.00 1132 reject_low 16 ALIGNMENT 0 Y12-19f20.p1k chr12 834 706 797179 797178 C 129 0.00 1132 reject_low 17 ALIGNMENT 1000 Y12-19f20.q1k chr07 32 1232 531872 533065 F 1201 95.75 1232 accept_trans 0 ALIGNMENT 0 Y12-19f20.p1k chr07 632 62 328659 328658 C 571 0.00 1132 reject_low 16 ALIGNMENT 74 Y12-19f20.p1k chr05 706 633 177097 177170 C 74 100.00 1132 reject_low 14 ALIGNMENT 0 Y12-19f20.p1k chr04 711 834 1017277 1017276 F 124 0.00 1132 reject_low 10 ALIGNMENT 78 Y12-19f20.p1k chr16 624 705 210181 210262 F 82 98.78 1132 reject_low 6 ALIGNMENT 0 Y12-19f20.p1k chr05 707 834 487398 487397 F 128 0.00 1132 reject_low 11 ALIGNMENT 0 Y12-19f20.p1k chr16 62 623 210181 210180 F 562 0.00 1132 reject_low 6 ALIGNMENT 72 Y12-19f20.p1k chr12 705 634 797178 797249 C 72 100.00 1132 reject_low 17 ALIGNMENT 0 Y12-19f20.p1k chr07 834 706 328587 328586 C 129 0.00 1132 reject_low 16 ALIGNMENT 274 Y12-19f21.q1k chr04 221 635 1166456 1166857 F 415 90.36 1232 accept 0 ALIGNMENT 909 Y12-19f21.p1k chr04 1076 22 1171944 1173006 C 1055 96.40 1083 accept 0 ALIGNMENT 958 Y12-19f23.q1k chr07 27 1124 267774 268865 F 1098 97.27 1153 accept 0 ALIGNMENT 946 Y12-19f23.p1k chr07 1056 20 270773 271799 C 1037 97.88 1076 accept 0 ALIGNMENT 928 Y12-19f24.p1k chr13 34 1067 375571 376605 F 1034 97.39 1067 ambiguous_trans 20 ALIGNMENT 929 Y12-19f24.p1k chr07 33 1067 820266 821301 F 1035 97.39 1067 ambiguous_trans 14 ALIGNMENT 932 Y12-19f24.p1k chr13 33 1067 359872 360907 F 1035 97.49 1067 ambiguous_trans 7 ALIGNMENT 931 Y12-19f24.p1k chr14 34 1067 99479 100513 F 1034 97.49 1067 ambiguous_trans 12 ALIGNMENT 931 Y12-19f24.p1k chr15 1067 34 119718 120752 C 1034 97.49 1067 ambiguous_trans 13 ALIGNMENT 931 Y12-19f24.p1k chr12 34 1067 217956 218990 F 1034 97.49 1067 ambiguous_trans_ua 10 ALIGNMENT 932 Y12-19f24.p1k chr04 33 1067 648367 649402 F 1035 97.49 1067 ambiguous_trans 3 ALIGNMENT 931 Y12-19f24.p1k chr05 34 1067 446267 447301 F 1034 97.49 1067 ambiguous_trans 9 ALIGNMENT 928 Y12-19f24.p1k chr13 1067 34 198347 199381 C 1034 97.39 1067 ambiguous_trans 19 ALIGNMENT 923 Y12-19f24.p1k chr12 33 1067 478848 479883 F 1035 97.20 1067 ambiguous_trans 23 ALIGNMENT 937 Y12-19f24.p1k chr02 1067 34 223052 224086 C 1034 97.68 1067 ambiguous_trans 1 ALIGNMENT 932 Y12-19f24.p1k chr07 33 1067 564717 565752 F 1035 97.49 1067 ambiguous_trans 6 ALIGNMENT 929 Y12-19f24.p1k chr08 33 1067 546478 547513 F 1035 97.39 1067 ambiguous_trans 15 ALIGNMENT 935 Y12-19f24.p1k chr16 33 1067 807511 808546 F 1035 97.58 1067 ambiguous_trans 2 ALIGNMENT 928 Y12-19f24.p1k chr02 1067 34 261586 262620 C 1034 97.39 1067 ambiguous_trans 17 ALIGNMENT 928 Y12-19f24.p1k chr10 1067 34 479977 481011 C 1034 97.39 1067 ambiguous_trans 18 ALIGNMENT 350 Y12-19f24.q1k chr11 727 265 76316 76771 C 463 93.95 1262 accept 0 ALIGNMENT 925 Y12-19f24.p1k chr16 1067 33 846424 847462 C 1035 97.29 1067 ambiguous_trans 21 ALIGNMENT 932 Y12-19f24.p1k chr04 1067 33 1097778 1098813 C 1035 97.49 1067 ambiguous_trans 5 ALIGNMENT 911 Y12-19f24.p1k chr16 33 1067 853499 854534 F 1035 96.81 1067 ambiguous_trans 24 ALIGNMENT 931 Y12-19f24.p1k chr13 1067 34 186180 187214 C 1034 97.49 1067 ambiguous_trans 11 ALIGNMENT 932 Y12-19f24.p1k chr04 33 1067 989589 990624 F 1035 97.49 1067 ambiguous_trans 4 ALIGNMENT 929 Y12-19f24.p1k chr15 1067 33 596831 597866 C 1035 97.39 1067 ambiguous_trans 16 ALIGNMENT 925 Y12-19f24.p1k chr10 1067 34 474393 475427 C 1034 97.29 1067 ambiguous_trans 22 ALIGNMENT 931 Y12-19f24.p1k chr01 33 1067 163112 164148 F 1035 97.39 1067 ambiguous_trans 8 ALIGNMENT 1033 Y12-19g01.q1k chr15 35 1202 101589 102764 F 1168 97.00 1202 accept 0 ALIGNMENT 854 Y12-19g01.p1k chr15 1076 22 106447 107489 C 1055 95.64 1150 accept 0 ALIGNMENT 562 Y12-19g02.q1k chr04 812 44 649666 650421 C 769 93.11 1381 ambiguous_trans 0 ALIGNMENT 556 Y12-19g02.q1k chr13 44 812 185161 185916 F 769 92.85 1381 ambiguous_trans 13 ALIGNMENT 553 Y12-19g02.q1k chr04 812 44 990888 991643 C 769 92.72 1381 ambiguous_trans 16 ALIGNMENT 553 Y12-19g02.q1k chr15 44 812 595812 596567 F 769 92.72 1381 ambiguous_trans 19 ALIGNMENT 559 Y12-19g02.q1k chr13 44 809 197328 198080 F 766 93.08 1381 ambiguous_trans 8 ALIGNMENT 562 Y12-19g02.q1k chr10 44 812 473374 474129 F 769 93.11 1381 ambiguous_trans 3 ALIGNMENT 562 Y12-19g02.q1k chr12 812 44 480147 480902 C 769 93.11 1381 ambiguous_trans 4 ALIGNMENT 333 Y12-19g02.q1k chr02 47 812 222036 222788 F 766 83.29 1381 reject_low 23 ALIGNMENT 553 Y12-19g02.q1k chr02 44 812 260567 261322 F 769 92.72 1381 ambiguous_trans 15 ALIGNMENT 556 Y12-19g02.q1k chr13 812 44 376869 377624 C 769 92.85 1381 ambiguous_trans 14 ALIGNMENT 553 Y12-19g02.q1k chr16 812 44 808810 809565 C 769 92.72 1381 ambiguous_trans 20 ALIGNMENT 331 Y12-19g02.q1k chr13 812 47 361171 361923 C 766 83.16 1381 reject_low 24 ALIGNMENT 553 Y12-19g02.q1k chr14 44 812 520157 520912 F 769 92.72 1381 ambiguous_trans 18 ALIGNMENT 562 Y12-19g02.q1k chr07 812 44 566016 566771 C 769 93.11 1381 ambiguous_trans 2 ALIGNMENT 553 Y12-19g02.q1k chr16 44 812 845405 846160 F 769 92.72 1381 ambiguous_trans 21 ALIGNMENT 562 Y12-19g02.q1k chr16 44 812 57448 58203 F 769 93.11 1381 ambiguous_trans 5 ALIGNMENT 556 Y12-19g02.q1k chr12 812 44 219254 220009 C 769 92.85 1381 ambiguous_trans_ua 12 ALIGNMENT 556 Y12-19g02.q1k chr05 812 44 496664 497419 C 769 92.85 1381 ambiguous_trans 9 ALIGNMENT 562 Y12-19g02.q1k chr05 812 44 447565 448320 C 769 93.11 1381 ambiguous_trans 1 ALIGNMENT 559 Y12-19g02.q1k chr12 44 812 651819 652574 F 769 92.98 1381 ambiguous_trans 7 ALIGNMENT 550 Y12-19g02.q1k chr04 812 44 882467 883222 C 769 92.59 1381 ambiguous_trans 22 ALIGNMENT 553 Y12-19g02.q1k chr10 44 812 478958 479713 F 769 92.72 1381 ambiguous_trans 17 ALIGNMENT 556 Y12-19g02.q1k chr08 812 44 547777 548532 C 769 92.85 1381 ambiguous_trans 11 ALIGNMENT 562 Y12-19g02.q1k chr16 812 44 854798 855553 C 769 93.11 1381 ambiguous_trans 6 ALIGNMENT 556 Y12-19g02.q1k chr07 812 44 821565 822320 C 769 92.85 1381 ambiguous_trans 10 ALIGNMENT 861 Y12-19g03.q1k chr07 1106 31 441884 442933 C 1076 95.26 1253 accept 0 ALIGNMENT 909 Y12-19g04.q1k chr12 1059 1 559551 560602 C 1059 96.22 1265 accept 0 ALIGNMENT 892 Y12-19g04.p1k chr12 17 1035 556497 557509 F 1019 96.86 1226 accept 0 ALIGNMENT 400 Y12-19g05.p1k chr06 73 649 135489 136053 F 577 92.55 1314 accept_trans 0 ALIGNMENT 372 Y12-19g05.q1k chr06 508 35 146806 147283 C 474 93.88 1264 accept_trans 0 ALIGNMENT 375 Y12-19g06.q1k chr10 474 38 711481 711919 C 437 96.34 1288 accept 0 ALIGNMENT 971 Y12-19g07.q1k chr04 37 1234 1274333 1275544 F 1198 94.74 1240 accept 0 ALIGNMENT 990 Y12-19g07.p1k chr04 1140 18 1277469 1278599 C 1123 96.71 1164 accept 0 ALIGNMENT 970 Y12-19g08.p1k chr09 19 1201 292123 293294 F 1183 95.69 1229 accept 0 ALIGNMENT 1043 Y12-19g08.q1k chr09 1285 31 296186 297425 C 1255 96.10 1288 accept 0 ALIGNMENT 914 Y12-19g09.q1k chr04 1164 37 501239 502383 C 1128 94.15 1245 accept 0 ALIGNMENT 821 Y12-19g09.p1k chr04 16 1032 497848 498868 F 1017 94.20 1115 accept 0 ALIGNMENT 598 Y12-19g10.p1k chr03 78 961 282175 283054 F 884 90.61 1209 accept 0 ALIGNMENT 918 Y12-19g10.q1k chr03 1086 28 287062 288130 C 1059 96.41 1250 accept 0 ALIGNMENT 993 Y12-19g11.p1k chr16 1170 18 261368 262526 C 1153 96.88 1170 accept 0 ALIGNMENT 994 Y12-19g11.q1k chr16 35 1163 257494 258622 F 1129 96.72 1246 accept 0 ALIGNMENT 0 Y12-19g12.p1k chr15 911 497 822924 822923 C 415 0.00 1195 reject_low 2 ALIGNMENT 24 Y12-19g12.p1k chr02 496 443 464015 464068 C 54 100.00 1195 reject_low 1 ALIGNMENT 24 Y12-19g12.p1k chr15 496 443 822923 822976 C 54 100.00 1195 reject_low 2 ALIGNMENT 928 Y12-19g12.p1k chr12 1195 27 667297 668435 C 1169 94.87 1195 accept 0 ALIGNMENT 0 Y12-19g12.p1k chr02 911 497 464016 464015 C 415 0.00 1195 reject_low 1 ALIGNMENT 0 Y12-19g12.p1k chr15 442 62 822977 822976 C 381 0.00 1195 reject_low 2 ALIGNMENT 898 Y12-19g12.q1k chr12 38 1207 665561 666772 F 1170 93.33 1273 accept 0 ALIGNMENT 0 Y12-19g12.p1k chr02 442 62 464069 464068 C 381 0.00 1195 reject_low 1 ALIGNMENT 1000 Y12-19g13.q1k chr04 44 1176 847294 848431 F 1133 97.18 1194 accept 0 ALIGNMENT 923 Y12-19g13.p1k chr04 1155 20 850717 851854 C 1136 95.16 1163 accept 0 ALIGNMENT 1039 Y12-19g14.p1k chr15 19 1191 172064 173240 F 1173 97.36 1197 accept 0 ALIGNMENT 980 Y12-19g14.q1k chr15 1225 37 175249 176443 C 1189 95.04 1227 accept 0 ALIGNMENT 1003 Y12-19g17.q1k chr14 36 1207 115507 116672 F 1172 95.99 1221 accept 0 ALIGNMENT 894 Y12-19g17.p1k chr14 1134 25 118653 119767 C 1110 94.50 1136 accept 0 ALIGNMENT 236 Y12-19g18.q1k chr04 566 188 1403582 1403943 C 379 89.71 1410 accept 0 ALIGNMENT 947 Y12-19g18.p1k chr04 30 1161 1397586 1398733 F 1132 96.02 1162 accept 0 ALIGNMENT 860 Y12-19g19.q1k chr12 1073 37 1041673 1042724 C 1037 96.24 1176 accept 0 ALIGNMENT 985 Y12-19g19.p1k chr12 22 1107 1039370 1040456 F 1086 97.61 1107 accept 0 ALIGNMENT 980 Y12-19g20.p1k chr11 30 1141 50722 51836 F 1112 98.11 1143 accept 0 ALIGNMENT 944 Y12-19g20.q1k chr11 1096 34 53577 54652 C 1063 97.27 1203 accept 0 ALIGNMENT 481 Y12-19g22.p1k chr02 837 116 793878 794608 C 722 89.34 1081 accept 0 ALIGNMENT 208 Y12-19g23.q1k chr04 340 681 418685 419033 F 342 90.06 1057 accept 0 ALIGNMENT 969 Y12-19g23.p1k chr04 1081 30 423966 425018 C 1052 98.38 1081 accept 0 ALIGNMENT 624 Y12-19h01.p1k chr14 121 1054 77948 78867 F 934 88.22 1228 accept 0 ALIGNMENT 977 Y12-19h01.q1k chr14 1207 31 81159 82325 C 1177 95.75 1247 accept 0 ALIGNMENT 837 Y12-19h02.q1k chr10 1 977 577027 577983 F 977 96.83 1264 accept 0 ALIGNMENT 743 Y12-19h02.p1k chr10 925 27 579239 580122 C 899 95.66 1305 accept 0 ALIGNMENT 924 Y12-19h03.q1k chr08 1091 19 184215 185275 C 1073 97.39 1275 accept 0 ALIGNMENT 728 Y12-19h03.p1k chr08 33 915 181093 181969 F 883 95.47 1252 accept 0 ALIGNMENT 760 Y12-19h04.p1k chr05 947 24 201334 202245 C 924 95.35 1247 accept 0 ALIGNMENT 755 Y12-19h04.q1k chr05 3 970 197149 198098 F 968 94.83 1253 accept 0 ALIGNMENT 621 Y12-19h05.q1k chr07 37 881 1069343 1070189 F 845 91.60 1251 accept 0 ALIGNMENT 565 Y12-19h05.p1k chr07 898 95 1073304 1074113 C 804 91.42 1169 accept 0 ALIGNMENT 266 Y12-19h06.p1k chr02 16 494 584350 584837 F 479 87.06 1156 accept 0 ALIGNMENT 844 Y12-19h06.q1k chr02 1089 27 586924 588000 C 1063 94.07 1248 accept 0 ALIGNMENT 0 Y12-19h07.p1k chr13 62 564 552493 552492 F 503 0.00 1162 reject_low 1 ALIGNMENT 308 Y12-19h07.p1k chr13 565 978 552493 552908 F 414 91.79 1162 reject_low 1 ALIGNMENT 902 Y12-19h07.p1k chr04 1054 23 306832 307877 C 1032 97.09 1162 accept 0 ALIGNMENT 888 Y12-19h07.q1k chr04 37 1019 303398 304393 F 983 97.25 1221 accept 0 ALIGNMENT 934 Y12-19h08.q1k chr08 1232 40 201450 202677 C 1193 94.80 1249 accept 0 ALIGNMENT 1023 Y12-19h08.p1k chr08 30 1206 198555 199725 F 1177 96.77 1210 accept 0 ALIGNMENT 0 Y12-19h09.q1k chr11 909 828 457875 457956 C 82 0.00 1284 reject_low 6 ALIGNMENT 59 Y12-19h09.q1k chr15 1021 1100 976419 976498 F 80 91.25 1284 reject_low 2 ALIGNMENT 57 Y12-19h09.q1k chr10 1089 1021 390960 391028 C 69 94.20 1284 reject_low 5 ALIGNMENT 0 Y12-19h09.q1k chr13 1020 62 572952 572951 C 959 0.00 1284 reject_low 3 ALIGNMENT 21 Y12-19h09.q1k chr11 937 910 457847 457874 C 28 89.29 1284 reject_low 6 ALIGNMENT 62 Y12-19h09.q1k chr16 367 110 442749 443004 C 258 77.13 1284 reject_low 1 ALIGNMENT 0 Y12-19h09.q1k chr15 62 1020 976419 976418 F 959 0.00 1284 reject_low 2 ALIGNMENT 20 Y12-19h09.q1k chr11 827 694 457957 458090 C 134 74.63 1284 reject_low 6 ALIGNMENT 972 Y12-19h09.q1k chr10 35 1246 421867 423078 F 1212 94.80 1284 accept 0 ALIGNMENT 0 Y12-19h09.q1k chr16 109 62 443005 443004 C 48 0.00 1284 reject_low 1 ALIGNMENT 60 Y12-19h09.q1k chr13 1096 1021 572875 572951 C 76 93.42 1284 reject_low 3 ALIGNMENT 59 Y12-19h09.q1k chr04 1021 1096 1175824 1175898 F 76 93.42 1284 reject_low 4 ALIGNMENT 0 Y12-19h09.q1k chr11 693 62 458091 458090 C 632 0.00 1284 reject_low 6 ALIGNMENT 655 Y12-19h09.p1k chr10 821 49 425039 425813 C 773 95.99 1274 accept 0 ALIGNMENT 0 Y12-19h09.q1k chr16 841 368 442750 442749 C 474 0.00 1284 reject_low 1 ALIGNMENT 0 Y12-19h09.q1k chr04 62 1020 1175824 1175823 F 959 0.00 1284 reject_low 4 ALIGNMENT 0 Y12-19h09.q1k chr10 1020 62 391029 391028 C 959 0.00 1284 reject_low 5 ALIGNMENT 854 Y12-19h11.q1k chr12 1108 36 291490 292569 C 1073 94.41 1252 accept 0 ALIGNMENT 876 Y12-19h11.p1k chr12 25 1154 288671 289786 F 1130 94.25 1228 accept 0 ALIGNMENT 1000 Y12-19h12.q1k chr12 1222 35 455075 456260 C 1188 95.45 1291 reject_low 1 ALIGNMENT 328 Y12-19h12.p1k chr12 722 1193 489754 490230 F 472 90.89 1196 reject_low 2 ALIGNMENT 662 Y12-19h12.p1k chr12 352 1193 451419 452262 F 842 94.18 1196 reject_low 1 ALIGNMENT 925 Y12-19h12.p1k chr12 19 1193 460210 461399 F 1175 94.30 1196 accept 0 ALIGNMENT 1000 Y12-19h12.q1k chr12 1222 35 464212 465397 C 1188 95.45 1291 accept 0 ALIGNMENT 0 Y12-19h12.p1k chr12 62 721 489754 489753 F 660 0.00 1196 reject_low 2 ALIGNMENT 0 Y12-19h12.p1k chr12 62 351 451419 451418 F 290 0.00 1196 reject_low 1 ALIGNMENT 1031 Y12-19h13.q1k chr05 1220 29 282361 283555 C 1192 95.97 1221 accept 0 ALIGNMENT 911 Y12-19h13.p1k chr05 21 1145 278345 279464 F 1125 94.40 1198 accept 0 ALIGNMENT 1014 Y12-19h14.p1k chr09 22 1163 313183 314335 F 1142 97.29 1188 accept 0 ALIGNMENT 980 Y12-19h14.q1k chr09 1218 35 316798 317987 C 1184 95.27 1234 accept 0 ALIGNMENT 0 Y12-19h14.q1k chr06 62 92 220496 220495 F 31 0.00 1234 reject_low 1 ALIGNMENT 679 Y12-19h14.q1k chr06 93 853 220496 221256 F 761 96.45 1234 reject_low 1 ALIGNMENT 0 Y12-19h15.q1k chr16 190 748 622628 622627 F 559 0.00 1171 reject_low 3 ALIGNMENT 95 Y12-19h15.q1k chr06 96 190 157908 158002 F 95 100.00 1171 reject_low 6 ALIGNMENT 0 Y12-19h15.q1k chr02 748 191 36395 36394 C 558 0.00 1171 reject_low 7 ALIGNMENT 0 Y12-19h15.q1k chr13 77 62 352390 352389 C 16 0.00 1171 reject_low 2 ALIGNMENT 0 Y12-19h15.q1k chr08 191 748 237942 237941 F 558 0.00 1171 reject_low 5 ALIGNMENT 0 Y12-19h15.q1k chr16 748 708 571779 571778 C 41 0.00 1171 reject_low 1 ALIGNMENT 89 Y12-19h15.q1k chr13 190 78 352278 352389 C 113 93.81 1171 reject_low 2 ALIGNMENT 79 Y12-19h15.q1k chr14 190 98 374870 374961 C 93 95.70 1171 reject_low 10 ALIGNMENT 0 Y12-19h15.q1k chr06 62 95 157908 157907 F 34 0.00 1171 reject_low 6 ALIGNMENT 0 Y12-19h15.q1k chr07 62 96 440720 440719 F 35 0.00 1171 reject_low 9 ALIGNMENT 547 Y12-19h15.q1k chr16 372 1099 560810 561543 F 728 93.41 1171|3,0 accept 0 ALIGNMENT 0 Y12-19h15.q1k chr16 314 62 572173 572172 C 253 0.00 1171 reject_low 1 ALIGNMENT 298 Y12-19h15.q1k chr16 37 376 560134 560477 F 340 97.35 1171|0,2 accept 0 ALIGNMENT 0 Y12-19h15.q1k chr04 62 86 1095354 1095353 F 25 0.00 1171 reject_low 4 ALIGNMENT 0 Y12-19h15.q1k chr06 191 748 158002 158001 F 558 0.00 1171 reject_low 6 ALIGNMENT 0 Y12-19h15.q1k chr04 191 748 1095457 1095456 F 558 0.00 1171 reject_low 4 ALIGNMENT 0 Y12-19h15.q1k chr02 88 62 36495 36494 C 27 0.00 1171 reject_low 7 ALIGNMENT 0 Y12-19h15.q1k chr14 97 62 374962 374961 C 36 0.00 1171 reject_low 10 ALIGNMENT 89 Y12-19h15.q1k chr04 87 190 1095354 1095457 F 104 95.19 1171 reject_low 4 ALIGNMENT 209 Y12-19h15.q1k chr16 707 315 571778 572172 C 393 86.77 1171 reject_low 1 ALIGNMENT 0 Y12-19h15.q1k chr08 62 96 358480 358479 F 35 0.00 1171 reject_low 8 ALIGNMENT 93 Y12-19h15.q1k chr07 97 189 440720 440812 F 93 100.00 1171 reject_low 9 ALIGNMENT 0 Y12-19h15.q1k chr08 191 748 358573 358572 F 558 0.00 1171 reject_low 8 ALIGNMENT 0 Y12-19h15.q1k chr16 375 374 560476 560812 F 0 0.00 1171 accept 0 ALIGNMENT 0 Y12-19h15.q1k chr13 748 191 352279 352278 C 558 0.00 1171 reject_low 2 ALIGNMENT 96 Y12-19h15.q1k chr16 88 189 622527 622628 F 102 98.04 1171 reject_low 3 ALIGNMENT 0 Y12-19h15.q1k chr08 62 94 237847 237846 F 33 0.00 1171 reject_low 5 ALIGNMENT 0 Y12-19h15.q1k chr16 62 87 622527 622526 F 26 0.00 1171 reject_low 3 ALIGNMENT 94 Y12-19h15.q1k chr08 97 190 358480 358573 F 94 100.00 1171 reject_low 8 ALIGNMENT 0 Y12-19h15.q1k chr07 190 748 440812 440811 F 559 0.00 1171 reject_low 9 ALIGNMENT 96 Y12-19h15.q1k chr08 95 190 237847 237942 F 96 100.00 1171 reject_low 5 ALIGNMENT 88 Y12-19h15.q1k chr02 190 89 36394 36494 C 102 96.08 1171 reject_low 7 ALIGNMENT 973 Y12-19h15.p1k chr16 1191 23 565107 566266 C 1169 95.72 1197 accept 0 ALIGNMENT 0 Y12-19h15.q1k chr14 748 191 374871 374870 C 558 0.00 1171 reject_low 10 ALIGNMENT 1031 Y12-19h16.p1k chr07 21 1173 136918 138081 F 1153 97.31 1174 accept 0 ALIGNMENT 914 Y12-19h16.q1k chr07 1151 28 140546 141681 C 1124 94.57 1199 accept 0 ALIGNMENT 932 Y12-19h17.p1k chr05 28 1161 220124 221256 F 1134 95.68 1170 accept 0 ALIGNMENT 919 Y12-19h18.p1k chr10 1109 24 198399 199476 C 1086 97.15 1161 ambiguous_trans 1 ALIGNMENT 902 Y12-19h18.p1k chr16 24 1109 441101 442174 F 1086 96.69 1161 ambiguous_trans 3 ALIGNMENT 1026 Y12-19h18.q1k chr07 1206 30 290343 291519 C 1177 96.52 1211 accept 0 ALIGNMENT 907 Y12-19h18.p1k chr08 1109 24 86470 87544 C 1086 96.78 1161 ambiguous_trans 2 ALIGNMENT 863 Y12-19h20.p1k chr13 20 1049 523174 524219 F 1030 95.63 1110 accept 0 ALIGNMENT 399 Y12-19h20.q1k chr13 652 36 529061 529685 C 617 90.28 836 accept 0 ALIGNMENT 962 Y12-19h22.p1k chr07 22 1096 65672 66746 F 1075 97.30 1096 accept 0 ALIGNMENT 874 Y12-19h22.q1k chr07 1095 31 68582 69657 C 1065 94.93 1130 accept 0 ALIGNMENT 701 Y12-19h23.p1k chr04 19 1019 649289 650280 F 1001 91.51 1109 ambiguous_trans 10 ALIGNMENT 701 Y12-19h23.p1k chr12 1019 19 651960 652951 C 1001 91.51 1109 ambiguous_trans 14 ALIGNMENT 854 Y12-19h23.p1k chr04 1019 19 804031 805022 C 1001 96.60 1109 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-19h23.q1k chr12 62 634 736685 736684 F 573 0.00 1162 reject_low 27 ALIGNMENT 1057 Y12-19h23.q1k chr10 31 1156 57341 58466 F 1126 98.40 1162 accept 0 ALIGNMENT 695 Y12-19h23.p1k chr13 1019 19 185302 186293 C 1001 91.31 1109 ambiguous_trans 19 ALIGNMENT 891 Y12-19h23.p1k chr13 19 1047 360794 361808 F 1029 97.28 1109 ambiguous_trans 2 ALIGNMENT 692 Y12-19h23.p1k chr02 1019 19 260708 261699 C 1001 91.21 1109 ambiguous_trans 22 ALIGNMENT 700 Y12-19h23.p1k chr12 1018 19 594282 595272 C 1000 91.50 1109 ambiguous_trans 16 ALIGNMENT 707 Y12-19h23.p1k chr13 1019 19 197469 198460 C 1001 91.71 1109 ambiguous_trans 6 ALIGNMENT 701 Y12-19h23.p1k chr10 1019 19 473515 474506 C 1001 91.51 1109 ambiguous_trans 13 ALIGNMENT 698 Y12-19h23.p1k chr16 19 1019 808433 809424 F 1001 91.41 1109 ambiguous_trans 18 ALIGNMENT 867 Y12-19h23.p1k chr14 19 1047 100400 101414 F 1029 96.50 1109 ambiguous_trans 3 ALIGNMENT 707 Y12-19h23.p1k chr16 1019 19 57589 58580 C 1001 91.71 1109 ambiguous_trans 7 ALIGNMENT 701 Y12-19h23.p1k chr07 19 1019 565639 566630 F 1001 91.51 1109 ambiguous_trans 12 ALIGNMENT 707 Y12-19h23.p1k chr05 19 1019 447188 448179 F 1001 91.71 1109 ambiguous_trans 5 ALIGNMENT 692 Y12-19h23.p1k chr04 19 1019 882090 883081 F 1001 91.21 1109 ambiguous_trans 23 ALIGNMENT 701 Y12-19h23.p1k chr16 19 1019 854421 855412 F 1001 91.51 1109 ambiguous_trans 15 ALIGNMENT 692 Y12-19h23.p1k chr15 1019 19 595953 596944 C 1001 91.21 1109 ambiguous_trans 24 ALIGNMENT 897 Y12-19h23.p1k chr02 1047 19 222151 223165 C 1029 97.47 1109 ambiguous_trans 1 ALIGNMENT 701 Y12-19h23.p1k chr07 1019 19 536902 537893 C 1001 91.51 1109 ambiguous_trans 11 ALIGNMENT 702 Y12-19h23.p1k chr15 1017 19 118842 119831 C 999 91.59 1109 ambiguous_trans 9 ALIGNMENT 692 Y12-19h23.p1k chr16 1019 19 845546 846537 C 1001 91.21 1109 ambiguous_trans 25 ALIGNMENT 698 Y12-19h23.p1k chr10 1019 19 479099 480090 C 1001 91.41 1109 ambiguous_trans 17 ALIGNMENT 693 Y12-19h23.p1k chr05 19 1017 496287 497276 F 999 91.29 1109 ambiguous_trans 21 ALIGNMENT 704 Y12-19h23.p1k chr12 19 1019 479770 480761 F 1001 91.61 1109 ambiguous_trans 8 ALIGNMENT 692 Y12-19h23.p1k chr13 19 1016 376492 377480 F 998 91.28 1109 ambiguous_trans 26 ALIGNMENT 695 Y12-19h23.p1k chr14 1019 19 520298 521289 C 1001 91.31 1109 ambiguous_trans 20 ALIGNMENT 87 Y12-19h23.q1k chr12 635 1020 736685 737071 F 386 74.61 1162 reject_low 27 ALIGNMENT 638 Y12-19h24.q1k chr12 29 969 523807 524756 F 941 89.90 1064 accept 0 ALIGNMENT 829 Y12-19h24.p1k chr12 1010 36 525770 526726 C 975 96.82 1151 accept 0 ALIGNMENT 982 Y12-19i01.p1k chr02 24 1123 39672 40780 F 1100 97.36 1127 accept 0 ALIGNMENT 401 Y12-19i01.q1k chr02 542 32 44921 45432 C 511 93.74 1417 accept 0 ALIGNMENT 176 Y12-19i03.q1k chr08 602 1009 325772 326178 F 408 81.37 1206 reject_low 1 ALIGNMENT 0 Y12-19i03.q1k chr08 62 601 325772 325771 F 540 0.00 1206 reject_low 1 ALIGNMENT 1019 Y12-19i03.q1k chr04 36 1206 1182825 1183997 F 1171 96.33 1206 accept 0 ALIGNMENT 986 Y12-19i03.p1k chr04 1147 20 1188030 1189154 C 1128 97.34 1148 accept 0 ALIGNMENT 898 Y12-19i04.q1k chr09 7 1101 184228 185312 F 1095 95.53 1227 accept 0 ALIGNMENT 672 Y12-19i04.p1k chr09 916 31 187161 188041 C 886 93.12 1291 accept 0 ALIGNMENT 482 Y12-19i05.q1k chr15 836 81 894254 895002 C 756 89.29 1302 accept 0 ALIGNMENT 744 Y12-19i05.p1k chr15 22 912 889954 890840 F 891 95.17 1246 accept 0 ALIGNMENT 914 Y12-19i06.q1k chr07 1129 36 787448 788558 C 1094 95.52 1263 accept 0 ALIGNMENT 998 Y12-19i06.p1k chr07 21 1147 782420 783559 F 1127 97.43 1160 accept 0 ALIGNMENT 0 Y12-19i07.q1k chr15 62 412 594630 594629 F 351 0.00 1238 reject_low 17 ALIGNMENT 0 Y12-19i07.q1k chr14 62 294 102549 102548 F 233 0.00 1238 reject_low 41 ALIGNMENT 0 Y12-19i07.q1k chr02 627 850 226955 226954 F 224 0.00 1238 reject_low 8 ALIGNMENT 283 Y12-19i07.q1k chr08 606 295 543630 543941 C 312 99.04 1238 reject_low 13 ALIGNMENT 0 Y12-19i07.q1k chr14 325 850 102578 102577 F 526 0.00 1238 reject_low 41 ALIGNMENT 73 Y12-19i07.q1k chr15 674 882 600452 600661 F 209 80.86 1238 reject_low 40 ALIGNMENT 0 Y12-19i07.q1k chr08 850 607 543631 543630 C 244 0.00 1238 reject_low 13 ALIGNMENT 0 Y12-19i07.q1k chr16 62 292 560476 560475 F 231 0.00 1238 reject_low 5 ALIGNMENT 0 Y12-19i07.q1k chr14 673 62 102475 102474 C 612 0.00 1238 reject_low 24 ALIGNMENT 291 Y12-19i07.q1k chr11 632 295 457777 458114 C 338 97.34 1238 reject_low 4 ALIGNMENT 0 Y12-19i07.q1k chr13 62 673 189801 189800 F 612 0.00 1238 reject_low 22 ALIGNMENT 66 Y12-19i07.q1k chr12 344 553 688423 688630 F 210 80.00 1238 reject_low 34 ALIGNMENT 0 Y12-19i07.q1k chr13 673 627 357287 362585 C 47 0.00 1238 reject_low 39 ALIGNMENT 0 Y12-19i07.q1k chr14 294 62 96942 96941 C 233 0.00 1238 reject_low 3 ALIGNMENT 0 Y12-19i07.q1k chr13 607 850 190063 190062 F 244 0.00 1238 reject_low 14 ALIGNMENT 0 Y12-19i07.q1k chr07 62 491 817278 817277 F 430 0.00 1238 reject_low 35 ALIGNMENT 301 Y12-19i07.q1k chr13 626 295 362586 362917 C 332 98.80 1238 reject_low 39 ALIGNMENT 58 Y12-19i07.q1k chr01 882 656 160312 160542 C 227 78.41 1238 reject_low 42 ALIGNMENT 0 Y12-19i07.q1k chr02 62 294 226624 226623 F 233 0.00 1238 reject_low 8 ALIGNMENT 276 Y12-19i07.q1k chr10 294 626 472376 472714 F 333 96.40 1238 reject_low 15 ALIGNMENT 61 Y12-19i07.q1k chr08 882 674 116489 116698 C 209 78.95 1238 reject_low 28 ALIGNMENT 0 Y12-19i07.q1k chr14 850 629 96609 96608 C 222 0.00 1238 reject_low 3 ALIGNMENT 70 Y12-19i07.q1k chr13 882 674 362659 362868 C 209 80.38 1238 reject_low 23 ALIGNMENT 304 Y12-19i07.q1k chr11 627 293 517094 517428 C 335 98.81 1238 reject_low 2 ALIGNMENT 63 Y12-19i07.q1k chr07 492 603 817278 817387 F 112 88.39 1238 reject_low 35 ALIGNMENT 0 Y12-19i07.q1k chr08 850 629 116415 116414 C 222 0.00 1238 reject_low 7 ALIGNMENT 0 Y12-19i07.q1k chr14 293 62 102525 102524 C 232 0.00 1238 reject_low 37 ALIGNMENT 0 Y12-19i07.q1k chr01 294 62 160576 160575 C 233 0.00 1238 reject_low 1 ALIGNMENT 0 Y12-19i07.q1k chr07 62 294 931691 931690 F 233 0.00 1238 reject_low 9 ALIGNMENT 0 Y12-19i07.q1k chr02 62 673 226673 226672 F 612 0.00 1238 reject_low 19 ALIGNMENT 0 Y12-19i07.q1k chr01 655 62 166131 166130 C 594 0.00 1238 reject_low 27 ALIGNMENT 275 Y12-19i07.q1k chr10 295 626 483549 483886 F 332 96.39 1238 reject_low 16 ALIGNMENT 67 Y12-19i07.q1k chr07 674 882 931740 931949 F 209 79.90 1238 reject_low 25 ALIGNMENT 287 Y12-19i07.q1k chr07 606 291 823000 823315 C 316 99.05 1238 reject_low 36 ALIGNMENT 277 Y12-19i07.q1k chr07 293 626 535762 536101 F 334 96.41 1238 reject_low 12 ALIGNMENT 70 Y12-19i07.q1k chr02 674 882 226673 226882 F 209 80.38 1238 reject_low 19 ALIGNMENT 0 Y12-19i07.q1k chr16 628 850 560810 560809 F 223 0.00 1238 reject_low 5 ALIGNMENT 53 Y12-19i07.q1k chr10 674 882 483598 483813 F 209 77.99 1238 reject_low 32 ALIGNMENT 70 Y12-19i07.q1k chr11 882 674 517168 517377 C 209 80.38 1238 reject_low 21 ALIGNMENT 0 Y12-19i07.q1k chr13 673 62 362869 362868 C 612 0.00 1238 reject_low 23 ALIGNMENT 286 Y12-19i07.q1k chr15 295 606 594821 595132 F 312 99.36 1238 reject_low 40 ALIGNMENT 0 Y12-19i07.q1k chr13 294 62 362918 362917 C 233 0.00 1238 reject_low 39 ALIGNMENT 0 Y12-19i07.q1k chr10 62 293 472376 472375 F 232 0.00 1238 reject_low 15 ALIGNMENT 0 Y12-19i07.q1k chr11 850 628 517095 517094 C 223 0.00 1238 reject_low 2 ALIGNMENT 201 Y12-19i07.q1k chr01 765 295 160109 160575 C 471 84.08 1238 reject_low 1 ALIGNMENT 0 Y12-19i07.q1k chr10 62 294 483549 483548 F 233 0.00 1238 reject_low 16 ALIGNMENT 58 Y12-19i07.q1k chr11 882 674 457856 458065 C 209 78.47 1238 reject_low 29 ALIGNMENT 29 Y12-19i07.q1k chr14 295 324 102549 102578 F 30 100.00 1238 reject_low 41 ALIGNMENT 0 Y12-19i07.q1k chr01 850 766 160110 160109 C 85 0.00 1238 reject_low 1 ALIGNMENT 67 Y12-19i07.q1k chr16 674 882 560527 560736 F 209 79.90 1238 reject_low 26 ALIGNMENT 305 Y12-19i07.q1k chr14 628 295 96608 96941 C 334 99.10 1238 reject_low 3 ALIGNMENT 0 Y12-19i07.q1k chr08 294 62 543942 543941 C 233 0.00 1238 reject_low 13 ALIGNMENT 0 Y12-19i07.q1k chr15 62 294 600403 600402 F 233 0.00 1238 reject_low 11 ALIGNMENT 70 Y12-19i07.q1k chr13 882 674 357077 357286 C 209 80.38 1238 reject_low 39 ALIGNMENT 70 Y12-19i07.q1k chr13 674 882 189801 190010 F 209 80.38 1238 reject_low 22 ALIGNMENT 0 Y12-19i07.q1k chr12 437 62 688309 688308 C 376 0.00 1238 reject_low 38 ALIGNMENT 58 Y12-19i07.q1k chr01 882 656 165900 166130 C 227 78.41 1238 reject_low 27 ALIGNMENT 302 Y12-19i07.q1k chr13 628 295 357002 357335 C 334 98.80 1238 reject_low 6 ALIGNMENT 0 Y12-19i07.q1k chr15 62 294 594821 594820 F 233 0.00 1238 reject_low 40 ALIGNMENT 70 Y12-19i07.q1k chr14 882 674 102265 102474 C 209 80.38 1238 reject_low 24 ALIGNMENT 88 Y12-19i07.q1k chr15 413 882 594630 595079 F 470 78.09 1238 reject_low 17 ALIGNMENT 0 Y12-19i07.q1k chr11 850 633 457778 457777 C 218 0.00 1238 reject_low 4 ALIGNMENT 0 Y12-19i07.q1k chr07 62 292 535762 535761 F 231 0.00 1238 reject_low 12 ALIGNMENT 0 Y12-19i07.q1k chr01 655 627 160543 165826 C 29 0.00 1238 reject_low 42 ALIGNMENT 0 Y12-19i07.q1k chr01 293 62 166165 166164 C 232 0.00 1238 reject_low 42 ALIGNMENT 286 Y12-19i07.q1k chr07 606 295 817418 817729 C 312 99.36 1238 reject_low 10 ALIGNMENT 301 Y12-19i07.q1k chr16 293 627 560476 560810 F 335 98.51 1238 reject_low 5 ALIGNMENT 299 Y12-19i07.q1k chr08 628 295 116414 116747 C 334 98.50 1238 reject_low 7 ALIGNMENT 0 Y12-19i07.q1k chr10 62 673 483598 483597 F 612 0.00 1238 reject_low 32 ALIGNMENT 0 Y12-19i07.q1k chr11 673 62 458066 458065 C 612 0.00 1238 reject_low 29 ALIGNMENT 295 Y12-19i07.q1k chr07 295 626 931691 932022 F 332 98.19 1238 reject_low 9 ALIGNMENT 0 Y12-19i07.q1k chr07 62 673 535813 535812 F 612 0.00 1238 reject_low 30 ALIGNMENT 0 Y12-19i07.q1k chr10 62 673 472426 472425 F 612 0.00 1238 reject_low 31 ALIGNMENT 0 Y12-19i07.q1k chr07 604 850 817387 817386 F 247 0.00 1238 reject_low 35 ALIGNMENT 0 Y12-19i07.q1k chr07 290 62 823316 823315 C 229 0.00 1238 reject_low 36 ALIGNMENT 70 Y12-19i07.q1k chr08 882 674 543683 543892 C 209 80.38 1238 reject_low 20 ALIGNMENT 0 Y12-19i07.q1k chr10 627 850 472714 472713 F 224 0.00 1238 reject_low 15 ALIGNMENT 0 Y12-19i07.q1k chr07 627 850 932022 932021 F 224 0.00 1238 reject_low 9 ALIGNMENT 0 Y12-19i07.q1k chr08 673 62 116699 116698 C 612 0.00 1238 reject_low 28 ALIGNMENT 0 Y12-19i07.q1k chr14 673 627 96893 102191 C 47 0.00 1238 reject_low 37 ALIGNMENT 73 Y12-19i07.q1k chr07 882 674 823053 823262 C 209 80.86 1238 reject_low 18 ALIGNMENT 0 Y12-19i07.q1k chr15 607 673 595133 600451 F 67 0.00 1238 reject_low 40 ALIGNMENT 283 Y12-19i07.q1k chr13 295 606 189752 190063 F 312 99.04 1238 reject_low 14 ALIGNMENT 0 Y12-19i07.q1k chr07 673 62 823263 823262 C 612 0.00 1238 reject_low 18 ALIGNMENT 0 Y12-19i07.q1k chr07 62 673 931740 931739 F 612 0.00 1238 reject_low 25 ALIGNMENT 0 Y12-19i07.q1k chr07 673 607 817681 822999 C 67 0.00 1238 reject_low 36 ALIGNMENT 0 Y12-19i07.q1k chr07 294 62 817730 817729 C 233 0.00 1238 reject_low 10 ALIGNMENT 0 Y12-19i07.q1k chr08 294 62 116748 116747 C 233 0.00 1238 reject_low 7 ALIGNMENT 0 Y12-19i07.q1k chr07 627 850 536101 536100 F 224 0.00 1238 reject_low 12 ALIGNMENT 0 Y12-19i07.q1k chr16 62 673 560527 560526 F 612 0.00 1238 reject_low 26 ALIGNMENT 0 Y12-19i07.q1k chr08 673 62 543893 543892 C 612 0.00 1238 reject_low 20 ALIGNMENT 0 Y12-19i07.q1k chr13 850 629 357003 357002 C 222 0.00 1238 reject_low 6 ALIGNMENT 0 Y12-19i07.q1k chr07 62 834 817292 817291 F 773 0.00 1238 reject_low 33 ALIGNMENT 0 Y12-19i07.q1k chr13 62 294 189752 189751 F 233 0.00 1238 reject_low 14 ALIGNMENT 0 Y12-19i07.q1k chr12 62 343 688423 688422 F 282 0.00 1238 reject_low 34 ALIGNMENT 0 Y12-19i07.q1k chr11 673 62 517378 517377 C 612 0.00 1238 reject_low 21 ALIGNMENT 1028 Y12-19i07.p1k chr12 1165 20 690976 692126 C 1146 97.91 1171 accept 0 ALIGNMENT 0 Y12-19i07.q1k chr15 607 850 600714 600713 F 244 0.00 1238 reject_low 11 ALIGNMENT 0 Y12-19i07.q1k chr12 554 850 688630 688629 F 297 0.00 1238 reject_low 34 ALIGNMENT 0 Y12-19i07.q1k chr07 850 607 817419 817418 C 244 0.00 1238 reject_low 10 ALIGNMENT 301 Y12-19i07.q1k chr02 295 626 226624 226955 F 332 98.80 1238 reject_low 8 ALIGNMENT 0 Y12-19i07.q1k chr11 292 62 517429 517428 C 231 0.00 1238 reject_low 2 ALIGNMENT 73 Y12-19i07.q1k chr07 882 674 817471 817680 C 209 80.86 1238 reject_low 36 ALIGNMENT 305 Y12-19i07.q1k chr14 626 294 102192 102524 C 333 99.10 1238 reject_low 37 ALIGNMENT 53 Y12-19i07.q1k chr10 674 882 472426 472641 F 209 77.99 1238 reject_low 31 ALIGNMENT 70 Y12-19i07.q1k chr14 882 674 96683 96892 C 209 80.38 1238 reject_low 37 ALIGNMENT 286 Y12-19i07.q1k chr15 295 606 600403 600714 F 312 99.36 1238 reject_low 11 ALIGNMENT 0 Y12-19i07.q1k chr11 294 62 458115 458114 C 233 0.00 1238 reject_low 4 ALIGNMENT 0 Y12-19i07.q1k chr13 294 62 357336 357335 C 233 0.00 1238 reject_low 6 ALIGNMENT 49 Y12-19i07.q1k chr12 621 438 688126 688308 C 184 79.35 1238 reject_low 38 ALIGNMENT 376 Y12-19i07.q1k chr12 35 1210 687797 688965 F 1176 81.38 1238 accept 0 ALIGNMENT 29 Y12-19i07.q1k chr07 835 890 817292 817346 F 56 87.50 1238 reject_low 33 ALIGNMENT 0 Y12-19i07.q1k chr10 627 850 483886 483885 F 224 0.00 1238 reject_low 16 ALIGNMENT 53 Y12-19i07.q1k chr07 674 882 535813 536028 F 209 77.99 1238 reject_low 30 ALIGNMENT 211 Y12-19i07.q1k chr01 626 294 165827 166164 C 333 90.09 1238 reject_low 42 ALIGNMENT 0 Y12-19i07.q1k chr12 850 622 688127 688126 C 229 0.00 1238 reject_low 38 ALIGNMENT 953 Y12-19i09.q1k chr14 28 1233 145081 146273 F 1206 94.61 1234 accept 0 ALIGNMENT 1000 Y12-19i10.q1k chr12 34 1127 462003 463097 F 1094 97.44 1161 accept 1 ALIGNMENT 1000 Y12-19i10.q1k chr12 34 1127 452866 453960 F 1094 97.44 1161 accept 0 ALIGNMENT 1025 Y12-19i13.p1k chr10 22 1186 652712 653872 F 1165 97.00 1186 accept 0 ALIGNMENT 989 Y12-19i13.q1k chr10 1226 30 657761 658959 C 1197 95.07 1231 accept 0 ALIGNMENT 197 Y12-19i14.p1k chr07 893 334 481854 482413 C 560 78.39 1211 reject_low 1 ALIGNMENT 993 Y12-19i14.q1k chr16 1210 36 487680 488860 C 1175 96.43 1273 accept 0 ALIGNMENT 0 Y12-19i14.p1k chr07 333 62 482414 482413 C 272 0.00 1211 reject_low 1 ALIGNMENT 1025 Y12-19i14.p1k chr16 27 1200 482877 484051 F 1174 95.91 1211 accept 0 ALIGNMENT 961 Y12-19i15.p1k chr16 19 1095 183335 184416 F 1077 97.40 1157 accept 0 ALIGNMENT 0 Y12-19i15.q1k chr08 826 136 252852 252851 C 691 0.00 1228 reject_low 2 ALIGNMENT 24 Y12-19i15.q1k chr08 135 44 252851 252942 C 92 83.70 1228 reject_low 2 ALIGNMENT 25 Y12-19i15.q1k chr16 129 86 187381 187424 C 44 93.18 1228 reject_low 3 ALIGNMENT 0 Y12-19i15.q1k chr16 826 130 187382 187381 C 697 0.00 1228 reject_low 3 ALIGNMENT 0 Y12-19i15.q1k chr16 826 156 536684 536683 C 671 0.00 1228 reject_low 1 ALIGNMENT 0 Y12-19i15.q1k chr16 85 62 187425 187424 C 24 0.00 1228 reject_low 3 ALIGNMENT 33 Y12-19i15.q1k chr16 155 52 536683 536786 C 104 87.50 1228 reject_low 1 ALIGNMENT 835 Y12-19i15.q1k chr16 1135 41 186342 187424 C 1095 93.15 1228 accept 0 ALIGNMENT 1016 Y12-19i16.p1k chr14 19 1191 199453 200621 F 1173 95.99 1195 accept 0 ALIGNMENT 459 Y12-19i16.q1k chr14 738 31 203472 204183 C 708 88.42 1038 accept 0 ALIGNMENT 810 Y12-19i17.p1k chr09 23 1081 27506 28541 F 1059 94.24 1128 accept 0 ALIGNMENT 964 Y12-19i17.q1k chr09 1167 30 32723 33865 C 1138 96.22 1170 accept 0 ALIGNMENT 819 Y12-19i18.q1k chr12 35 1219 459944 461176 F 1185 91.05 1229 reject_low 1 ALIGNMENT 386 Y12-19i18.q1k chr12 622 1219 451419 452039 F 598 89.30 1229 reject_low 2 ALIGNMENT 1017 Y12-19i18.p1k chr12 1126 20 492289 493403 C 1107 98.01 1143 accept 0 ALIGNMENT 125 Y12-19i18.q1k chr12 970 1219 489754 490007 F 250 84.40 1229 accept 0 ALIGNMENT 0 Y12-19i18.q1k chr12 62 969 489754 489753 F 908 0.00 1229 accept 0 ALIGNMENT 0 Y12-19i18.q1k chr12 62 621 451419 451418 F 560 0.00 1229 reject_low 2 ALIGNMENT 761 Y12-19i19.q1k chr11 37 1046 634815 635841 F 1010 93.37 1164 accept 0 ALIGNMENT 899 Y12-19i19.p1k chr11 1113 26 637925 639014 C 1088 95.96 1124 accept 0 ALIGNMENT 26 Y12-19i22.q1k chr15 376 417 105669 105710 F 42 88.10 1151 reject_low 1 ALIGNMENT 0 Y12-19i22.q1k chr15 62 375 105669 105668 F 314 0.00 1151 reject_low 1 ALIGNMENT 838 Y12-19i22.p1k chr08 15 1079 92181 93246 F 1065 93.99 1092 accept 0 ALIGNMENT 928 Y12-19i22.q1k chr08 1139 32 95091 96207 C 1108 95.49 1151 accept 0 ALIGNMENT 0 Y12-19i22.q1k chr15 418 831 105710 105709 F 414 0.00 1151 reject_low 1 ALIGNMENT 964 Y12-19i23.p1k chr11 7 1029 163844 164868 F 1023 98.44 1058 accept 0 ALIGNMENT 387 Y12-19i23.q1k chr11 763 219 167819 168355 C 545 90.09 1194 accept 0 ALIGNMENT 880 Y12-19i24.p1k chr04 1063 21 1068546 1069600 C 1043 97.03 1068 accept_chi 0 ALIGNMENT 706 Y12-19i24.q1k chr07 34 875 494217 495072 F 842 95.25 1039 accept_chi 1 ALIGNMENT 370 Y12-19j01.p1k chr04 158 784 1438792 1439412 F 627 89.15 1306 accept 0 ALIGNMENT 309 Y12-19j01.q1k chr04 439 54 1442669 1443047 C 386 95.08 1614 accept 0 ALIGNMENT 910 Y12-19j02.p1k chr07 19 1103 445217 446287 F 1085 96.77 1203 accept 0 ALIGNMENT 429 Y12-19j02.q1k chr07 557 31 448835 449346 C 527 96.02 1341 accept 0 ALIGNMENT 729 Y12-19j04.q1k chr12 58 1009 904448 905379 F 952 94.96 1339 accept 0 ALIGNMENT 1016 Y12-19j05.q1k chr12 1168 38 917841 918978 C 1131 96.64 1275 accept 0 ALIGNMENT 971 Y12-19j05.p1k chr12 21 1122 913853 914947 F 1102 97.01 1187 accept 0 ALIGNMENT 779 Y12-19j06.q1k chr07 39 1021 522843 523842 F 983 94.71 1194 accept 0 ALIGNMENT 848 Y12-19j06.p1k chr07 996 29 526571 527555 C 968 97.11 1159 accept 0 ALIGNMENT 989 Y12-19j07.p1k chr07 1211 32 753458 754635 C 1180 95.85 1211 accept 0 ALIGNMENT 943 Y12-19j07.q1k chr07 43 1260 750601 751819 F 1218 93.35 1286 accept 0 ALIGNMENT 966 Y12-19j08.p1k chr02 1120 23 71084 72187 C 1098 96.90 1191 accept 0 ALIGNMENT 940 Y12-19j08.q1k chr02 37 1104 67027 68112 F 1068 97.10 1226 accept 0 ALIGNMENT 929 Y12-19j09.q1k chr04 1095 49 868488 869537 C 1047 97.13 1182 accept 0 ALIGNMENT 563 Y12-19j10.q1k chr06 34 720 37725 38415 F 687 95.20 1208 accept 0 ALIGNMENT 914 Y12-19j11.q1k chr02 35 1178 23520 24649 F 1144 94.67 1288 accept 0 ALIGNMENT 279 Y12-19j11.p1k chr02 539 142 29238 29640 C 398 91.46 1323|0,3 accept 0 ALIGNMENT 0 Y12-19j11.p1k chr02 144 145 29638 35601 C 0 0.00 1323 accept 0 ALIGNMENT 111 Y12-19j11.p1k chr02 146 21 35600 35727 C 126 98.41 1323|2,0 accept 0 ALIGNMENT 263 Y12-19j12.p1k chr02 1170 766 592010 592422 C 405 89.38 1234 reject_low 1 ALIGNMENT 0 Y12-19j12.p1k chr02 765 62 592423 592422 C 704 0.00 1234 reject_low 1 ALIGNMENT 982 Y12-19j12.p1k chr16 1170 18 377591 378753 C 1153 95.92 1234 accept 0 ALIGNMENT 969 Y12-19j12.q1k chr16 33 1208 373094 374278 F 1176 95.49 1291 accept 0 ALIGNMENT 962 Y12-19j14.q1k chr12 1180 36 463887 465021 C 1145 95.72 1291 accept 1 ALIGNMENT 962 Y12-19j14.q1k chr12 1180 36 454750 455884 C 1145 95.72 1291 accept 0 ALIGNMENT 683 Y12-19j14.p1k chr12 356 1146 489754 490543 F 791 96.08 1218 reject_low 2 ALIGNMENT 990 Y12-19j14.p1k chr12 33 1218 460604 461786 F 1186 95.62 1218 accept 1 ALIGNMENT 990 Y12-19j14.p1k chr12 33 1218 451467 452649 F 1186 95.62 1218 accept 0 ALIGNMENT 0 Y12-19j14.p1k chr12 62 355 489754 489753 F 294 0.00 1218 reject_low 2 ALIGNMENT 997 Y12-19j15.p1k chr08 1194 23 169655 170825 C 1172 96.33 1194 accept 0 ALIGNMENT 397 Y12-19j15.q1k chr08 34 663 166232 166869 F 630 88.73 1029 accept 0 ALIGNMENT 1032 Y12-19j16.p1k chr14 24 1174 324531 325684 F 1151 97.65 1174 accept 0 ALIGNMENT 1019 Y12-19j16.q1k chr14 1235 37 327381 328577 C 1199 95.83 1244 accept 0 ALIGNMENT 936 Y12-19j17.q1k chr04 1144 31 1508758 1509862 C 1114 95.96 1228 accept 0 ALIGNMENT 964 Y12-19j17.p1k chr04 17 1127 1506035 1507154 F 1111 96.40 1160 accept 0 ALIGNMENT 183 Y12-19j18.p1k chr16 410 83 856554 856878 C 328 86.89 1139 reject_low 12 ALIGNMENT 0 Y12-19j18.p1k chr16 82 62 880720 880719 C 21 0.00 1139 reject_low 11 ALIGNMENT 0 Y12-19j18.p1k chr12 886 418 374007 374006 C 469 0.00 1139 reject_low 16 ALIGNMENT 185 Y12-19j18.p1k chr14 417 83 546745 547075 C 335 86.87 1139 reject_low 10 ALIGNMENT 193 Y12-19j18.p1k chr04 417 83 668097 668428 C 335 87.46 1139 reject_low 3 ALIGNMENT 182 Y12-19j18.p1k chr07 417 83 707205 707535 C 335 86.57 1139 reject_low 13 ALIGNMENT 184 Y12-19j18.p1k chr16 417 83 880388 880719 C 335 86.57 1139 reject_low 11 ALIGNMENT 187 Y12-19j18.p1k chr07 417 113 845292 845603 C 305 89.18 1139 reject_low 8 ALIGNMENT 0 Y12-19j18.p1k chr04 261 260 1175306 1175642 F 0 0.00 1139 accept 0 ALIGNMENT 0 Y12-19j18.p1k chr16 886 411 856555 856554 C 476 0.00 1139 reject_low 12 ALIGNMENT 86 Y12-19j18.p1k chr03 417 209 168390 168595 C 209 82.30 1139|0,3 reject_low 19 ALIGNMENT 0 Y12-19j18.p1k chr14 886 418 546746 546745 C 469 0.00 1139 reject_low 10 ALIGNMENT 0 Y12-19j18.p1k chr05 329 886 492682 492681 F 558 0.00 1139 reject_low 17 ALIGNMENT 0 Y12-19j18.p1k chr16 886 418 880389 880388 C 469 0.00 1139 reject_low 11 ALIGNMENT 0 Y12-19j18.p1k chr14 82 62 547076 547075 C 21 0.00 1139 reject_low 10 ALIGNMENT 0 Y12-19j18.p1k chr04 82 62 668429 668428 C 21 0.00 1139 reject_low 3 ALIGNMENT 0 Y12-19j18.p1k chr04 82 62 1023469 1023468 C 21 0.00 1139 reject_low 7 ALIGNMENT 0 Y12-19j18.p1k chr05 62 82 249932 249931 F 21 0.00 1139 reject_low 4 ALIGNMENT 0 Y12-19j18.p1k chr02 82 62 198055 198054 C 21 0.00 1139 reject_low 2 ALIGNMENT 193 Y12-19j18.p1k chr05 83 417 249932 250263 F 335 87.46 1139 reject_low 4 ALIGNMENT 0 Y12-19j18.p1k chr14 886 329 726328 726327 C 558 0.00 1139 reject_low 18 ALIGNMENT 175 Y12-19j18.p1k chr14 328 83 726327 726572 C 246 91.46 1139 reject_low 18 ALIGNMENT 186 Y12-19j18.p1k chr15 417 83 854279 854609 C 335 86.87 1139 reject_low 9 ALIGNMENT 0 Y12-19j18.p1k chr15 886 418 854280 854279 C 469 0.00 1139 reject_low 9 ALIGNMENT 937 Y12-19j18.q1k chr04 1188 36 1179098 1180249 C 1153 94.62 1214 accept 0 ALIGNMENT 193 Y12-19j18.p1k chr02 417 83 197723 198054 C 335 87.46 1139 reject_low 2 ALIGNMENT 196 Y12-19j18.p1k chr05 83 417 434630 434961 F 335 87.76 1139 reject_low 1 ALIGNMENT 0 Y12-19j18.p1k chr05 62 82 434630 434629 F 21 0.00 1139 reject_low 1 ALIGNMENT 0 Y12-19j18.p1k chr04 62 82 945952 945951 F 21 0.00 1139 reject_low 5 ALIGNMENT 0 Y12-19j18.p1k chr07 112 62 845604 845603 C 51 0.00 1139 reject_low 8 ALIGNMENT 0 Y12-19j18.p1k chr04 886 418 668098 668097 C 469 0.00 1139 reject_low 3 ALIGNMENT 0 Y12-19j18.p1k chr14 82 62 726573 726572 C 21 0.00 1139 reject_low 18 ALIGNMENT 0 Y12-19j18.p1k chr12 90 62 374329 374328 C 29 0.00 1139 reject_low 16 ALIGNMENT 0 Y12-19j18.p1k chr11 418 886 202623 202622 F 469 0.00 1139 reject_low 15 ALIGNMENT 188 Y12-19j18.p1k chr04 83 417 945952 946283 F 335 87.16 1139 reject_low 5 ALIGNMENT 215 Y12-19j18.p1k chr04 21 262 1175065 1175307 F 242 97.52 1139|0,2 accept 0 ALIGNMENT 182 Y12-19j18.p1k chr09 417 83 205223 205553 C 335 86.57 1139 reject_low 14 ALIGNMENT 181 Y12-19j18.p1k chr12 417 91 374006 374328 C 327 86.85 1139 reject_low 16 ALIGNMENT 0 Y12-19j18.p1k chr15 82 62 854610 854609 C 21 0.00 1139 reject_low 9 ALIGNMENT 0 Y12-19j18.p1k chr03 82 62 169061 169060 C 21 0.00 1139 reject_low 19 ALIGNMENT 0 Y12-19j18.p1k chr03 886 418 168391 168390 C 469 0.00 1139 reject_low 19 ALIGNMENT 0 Y12-19j18.p1k chr16 82 62 856879 856878 C 21 0.00 1139 reject_low 12 ALIGNMENT 178 Y12-19j18.p1k chr05 83 328 492437 492682 F 246 91.87 1139 reject_low 17 ALIGNMENT 187 Y12-19j18.p1k chr04 417 83 1023137 1023468 C 335 86.87 1139 reject_low 7 ALIGNMENT 0 Y12-19j18.p1k chr08 418 886 146658 146657 F 469 0.00 1139 reject_low 6 ALIGNMENT 0 Y12-19j18.p1k chr02 886 418 197724 197723 C 469 0.00 1139 reject_low 2 ALIGNMENT 0 Y12-19j18.p1k chr04 418 886 946283 946282 F 469 0.00 1139 reject_low 5 ALIGNMENT 0 Y12-19j18.p1k chr05 418 886 434961 434960 F 469 0.00 1139 reject_low 1 ALIGNMENT 0 Y12-19j18.p1k chr05 62 82 492437 492436 F 21 0.00 1139 reject_low 17 ALIGNMENT 182 Y12-19j18.p1k chr11 83 417 202293 202623 F 335 86.87 1139 reject_low 15 ALIGNMENT 0 Y12-19j18.p1k chr08 62 82 146327 146326 F 21 0.00 1139 reject_low 6 ALIGNMENT 0 Y12-19j18.p1k chr09 886 418 205224 205223 C 469 0.00 1139 reject_low 14 ALIGNMENT 188 Y12-19j18.p1k chr08 83 417 146327 146658 F 335 87.16 1139 reject_low 6 ALIGNMENT 0 Y12-19j18.p1k chr05 418 886 250263 250262 F 469 0.00 1139 reject_low 4 ALIGNMENT 0 Y12-19j18.p1k chr04 886 418 1023138 1023137 C 469 0.00 1139 reject_low 7 ALIGNMENT 0 Y12-19j18.p1k chr09 82 62 205554 205553 C 21 0.00 1139 reject_low 14 ALIGNMENT 0 Y12-19j18.p1k chr07 886 418 707206 707205 C 469 0.00 1139 reject_low 13 ALIGNMENT 0 Y12-19j18.p1k chr07 82 62 707536 707535 C 21 0.00 1139 reject_low 13 ALIGNMENT 115 Y12-19j18.p1k chr03 214 83 168929 169060 C 132 96.97 1139|3,0 reject_low 19 ALIGNMENT 0 Y12-19j18.p1k chr07 886 418 845293 845292 C 469 0.00 1139 reject_low 8 ALIGNMENT 0 Y12-19j18.p1k chr11 62 82 202293 202292 F 21 0.00 1139 reject_low 15 ALIGNMENT 0 Y12-19j18.p1k chr03 211 212 168593 168931 C 0 0.00 1139 reject_low 19 ALIGNMENT 715 Y12-19j18.p1k chr04 258 1139 1175640 1176528 F 882 95.01 1139|3,0 accept 0 ALIGNMENT 904 Y12-19j20.q1k chr13 1146 28 48862 49972 C 1119 95.80 1232 accept 0 ALIGNMENT 524 Y12-19j22.p1k chr13 225 1036 599350 600169 F 812 88.42 1083 reject_low 1 ALIGNMENT 0 Y12-19j22.p1k chr13 62 224 599350 599349 F 163 0.00 1083 reject_low 1 ALIGNMENT 926 Y12-19j22.p1k chr13 21 1083 601355 602432 F 1063 96.43 1083 accept 0 ALIGNMENT 903 Y12-19j22.q1k chr13 1128 34 605164 606268 C 1095 94.61 1146 accept 0 ALIGNMENT 893 Y12-19j23.q1k chr04 1053 25 765091 766123 C 1029 96.89 1128 accept 0 ALIGNMENT 1004 Y12-19j23.p1k chr04 18 1082 762819 763883 F 1065 98.69 1082 accept 0 ALIGNMENT 965 Y12-19j24.p1k chr08 1163 60 61602 62705 C 1104 97.01 1163 accept 0 ALIGNMENT 465 Y12-19j24.q1k chr08 220 833 57359 57975 F 614 91.86 1177 accept 0 ALIGNMENT 911 Y12-19k01.p1k chr16 18 1100 634240 635310 F 1083 96.68 1158 accept 0 ALIGNMENT 973 Y12-19k01.q1k chr16 1196 32 637382 638532 C 1165 96.05 1199 accept 0 ALIGNMENT 844 Y12-19k02.p1k chr06 18 1016 182012 183000 F 999 95.90 1157 accept 0 ALIGNMENT 848 Y12-19k02.q1k chr06 1009 11 186419 187400 C 999 97.00 1297 accept 0 ALIGNMENT 936 Y12-19k03.q1k chr12 29 1132 244376 245466 F 1104 96.65 1233 accept 0 ALIGNMENT 866 Y12-19k03.p1k chr12 1111 17 249094 250174 C 1095 94.89 1170 accept 0 ALIGNMENT 296 Y12-19k05.q1k chr15 1033 234 894082 894884 C 800 80.62 1252 accept 0 ALIGNMENT 470 Y12-19k06.p1k chr01 124 895 147729 148498 F 772 87.69 1259 accept 0 ALIGNMENT 996 Y12-19k07.p1k chr15 19 1188 889948 891126 F 1170 96.15 1188 accept 0 ALIGNMENT 871 Y12-19k07.q1k chr15 1015 37 894077 895062 C 979 97.85 1187 accept 0 ALIGNMENT 868 Y12-19k09.p1k chr12 1049 26 695673 696712 C 1024 96.97 1160 accept 0 ALIGNMENT 866 Y12-19k09.q1k chr12 29 1114 692848 693944 F 1086 93.37 1244 accept 0 ALIGNMENT 992 Y12-19k10.p1k chr04 18 1160 888544 889702 F 1143 96.50 1190 accept_chi 0 ALIGNMENT 839 Y12-19k10.q1k chr04 32 1136 414786 415875 F 1105 93.85 1272 accept_chi 1 ALIGNMENT 681 Y12-19k13.q1k chr12 822 31 456469 457254 C 792 95.96 1044 accept 0 ALIGNMENT 681 Y12-19k13.q1k chr12 822 31 465606 466391 C 792 95.96 1044 reject_low 1 ALIGNMENT 1002 Y12-19k13.p1k chr12 19 1128 452987 454100 F 1110 97.39 1184 accept 0 ALIGNMENT 997 Y12-19k13.p1k chr12 19 1099 462124 463206 F 1081 97.96 1184 reject_low 1 ALIGNMENT 955 Y12-19k14.p1k chr16 1178 19 623095 624271 C 1160 95.60 1200 accept 0 ALIGNMENT 950 Y12-19k14.q1k chr16 32 1198 620297 621471 F 1167 95.29 1254 accept 0 ALIGNMENT 945 Y12-19k15.p1k chr12 1123 24 457021 458137 C 1100 96.18 1123 accept 0 ALIGNMENT 873 Y12-19k15.q1k chr12 60 1095 462508 463550 F 1036 95.46 1205 accept 1 ALIGNMENT 945 Y12-19k15.p1k chr12 1123 24 466158 467274 C 1100 96.18 1123 accept 1 ALIGNMENT 873 Y12-19k15.q1k chr12 60 1095 453371 454413 F 1036 95.46 1205 accept 0 ALIGNMENT 1040 Y12-19k16.p1k chr12 21 1143 453697 454822 F 1123 98.13 1155 accept 0 ALIGNMENT 1040 Y12-19k16.p1k chr12 21 1143 462834 463959 F 1123 98.13 1155 accept 1 ALIGNMENT 1003 Y12-19k16.q1k chr12 1265 38 466181 467401 C 1228 93.89 1267 accept 1 ALIGNMENT 1003 Y12-19k16.q1k chr12 1265 38 457044 458264 C 1228 93.89 1267 accept 0 ALIGNMENT 0 Y12-19k17.p1k chrm 381 376 20169 20212 C 6 0.00 1104 reject_bad_break 0 ALIGNMENT 0 Y12-19k17.p1k chrm 321 267 20267 20298 C 55 0.00 1104 reject_bad_break 0 ALIGNMENT 27 Y12-19k17.p1k chrm 375 322 20213 20266 C 54 92.59 1104 reject_bad_break 0 ALIGNMENT 873 Y12-19k17.q1k chrm 36 1083 16463 17527 F 1048 96.56 1171 reject_bad_break 0 ALIGNMENT 152 Y12-19k17.p1k chrm 1074 382 19488 20168 C 693 82.68 1104 reject_bad_break 0 ALIGNMENT 0 Y12-19k17.p1k chrm 229 130 20336 20398 C 100 0.00 1104 reject_bad_break 0 ALIGNMENT 30 Y12-19k17.p1k chrm 266 230 20299 20335 C 37 97.30 1104 reject_bad_break 0 ALIGNMENT 47 Y12-19k17.p1k chrm 129 79 20399 20449 C 51 98.04 1104 reject_bad_break 0 ALIGNMENT 29 Y12-19k17.p1k chrm 67 20 20443 20492 C 48 93.75 1104 reject_bad_break 0 ALIGNMENT 0 Y12-19k17.p1k chrm 78 68 20450 20442 C 11 0.00 1104 reject_bad_break 0 ALIGNMENT 935 Y12-19k19.p1k chr05 1091 17 426127 427207 C 1075 96.56 1139 accept 0 ALIGNMENT 913 Y12-19k19.q1k chr05 36 1113 422493 423565 F 1078 95.73 1255 accept 0 ALIGNMENT 969 Y12-19k20.p1k chr12 1114 24 1009521 1010617 C 1091 97.25 1156 accept 0 ALIGNMENT 1000 Y12-19k22.q1k chr04 1185 32 1090146 1091300 C 1154 96.88 1205 accept 0 ALIGNMENT 994 Y12-19k22.p1k chr04 20 1083 1088942 1090007 F 1064 98.68 1085 accept 0 ALIGNMENT 926 Y12-19k23.q1k chr15 1153 32 605978 607100 C 1122 94.83 1155 accept 0 ALIGNMENT 938 Y12-19k23.p1k chr15 31 1054 602872 603893 F 1024 98.24 1057 accept 0 ALIGNMENT 394 Y12-19k24.q1k chr15 1138 486 27065 27704 C 653 89.43 1181 ambiguous_tel 1 ALIGNMENT 384 Y12-19k24.q1k chr09 1138 486 21310 21951 C 653 88.97 1181 ambiguous_tel 2 ALIGNMENT 0 Y12-19k24.q1k chr15 485 62 27705 27704 C 424 0.00 1181 ambiguous_tel 1 ALIGNMENT 881 Y12-19k24.p1k chr05 16 1029 464384 465388 F 1014 97.24 1097 accept 0 ALIGNMENT 0 Y12-19k24.q1k chr09 485 62 21952 21951 C 424 0.00 1181 ambiguous_tel 2 ALIGNMENT 244 Y12-19l02.p1k chr14 212 533 519164 519487 F 322 94.41 1289 ambiguous_trans 22 ALIGNMENT 0 Y12-19l02.p1k chr10 499 363 537833 537832 C 137 0.00 1289 ambiguous_trans_ua 24 ALIGNMENT 282 Y12-19l02.p1k chr02 212 540 9093 9421 F 329 97.57 1289 ambiguous_trans_ua 8 ALIGNMENT 0 Y12-19l02.p1k chr06 137 211 143535 143534 F 75 0.00 1289 ambiguous_trans 10 ALIGNMENT 0 Y12-19l02.p1k chr05 211 137 135940 135939 C 75 0.00 1289 ambiguous_trans_ua 5 ALIGNMENT 21 Y12-19l02.p1k chr06 476 533 143869 143927 F 58 84.48 1289 ambiguous_trans 25 ALIGNMENT 244 Y12-19l02.p1k chr14 212 533 524730 525053 F 322 94.41 1289 ambiguous_trans 23 ALIGNMENT 274 Y12-19l02.p1k chr15 212 536 970282 970606 F 325 97.23 1289 ambiguous_trans 19 ALIGNMENT 0 Y12-19l02.p1k chr12 209 137 732005 732004 C 73 0.00 1289 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-19l02.p1k chr14 137 211 524730 524729 F 75 0.00 1289 ambiguous_trans 23 ALIGNMENT 268 Y12-19l02.p1k chr12 533 210 731680 732004 C 324 96.30 1289 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-19l02.p1k chr12 211 137 976586 976585 C 75 0.00 1289 ambiguous_trans 14 ALIGNMENT 279 Y12-19l02.p1k chr04 212 540 1352634 1352962 F 329 97.26 1289 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-19l02.p1k chr07 211 137 569077 569076 C 75 0.00 1289 ambiguous_trans 6 ALIGNMENT 0 Y12-19l02.p1k chr06 137 211 137908 137907 F 75 0.00 1289 ambiguous_trans 9 ALIGNMENT 0 Y12-19l02.p1k chr15 137 211 970282 970281 F 75 0.00 1289 ambiguous_trans 19 ALIGNMENT 273 Y12-19l02.p1k chr04 212 540 981165 981493 F 329 96.66 1289 ambiguous_trans 18 ALIGNMENT 0 Y12-19l02.p1k chr04 137 211 1352634 1352633 F 75 0.00 1289 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-19l02.p1k chr12 137 211 941189 941188 F 75 0.00 1289 ambiguous_trans 3 ALIGNMENT 285 Y12-19l02.p1k chr12 212 543 941189 941520 F 332 97.29 1289 ambiguous_trans 3 ALIGNMENT 286 Y12-19l02.p1k chr03 212 544 90437 90769 F 333 97.30 1289 ambiguous_trans 2 ALIGNMENT 276 Y12-19l02.p1k chr04 212 537 871816 872141 F 326 97.24 1289 ambiguous_trans 17 ALIGNMENT 0 Y12-19l02.p1k chr05 137 209 487827 487826 F 73 0.00 1289 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-19l02.p1k chr02 137 211 9093 9092 F 75 0.00 1289 ambiguous_trans_ua 8 ALIGNMENT 0 Y12-19l02.p1k chr04 137 211 981165 981164 F 75 0.00 1289 ambiguous_trans 18 ALIGNMENT 0 Y12-19l02.p1k chr10 137 211 538017 538016 F 75 0.00 1289 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-19l02.p1k chr06 472 475 137900 143868 F 4 0.00 1289 ambiguous_trans 25 ALIGNMENT 30 Y12-19l02.p1k chr06 281 471 137720 137899 F 191 76.44 1289 ambiguous_trans 25 ALIGNMENT 282 Y12-19l02.p1k chr05 544 212 135607 135939 C 333 97.30 1289 ambiguous_trans_ua 5 ALIGNMENT 34 Y12-19l02.p1k chr10 362 245 537832 537948 C 118 78.81 1289 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-19l02.p1k chr13 137 210 768546 768545 F 74 0.00 1289 ambiguous_trans_ua 7 ALIGNMENT 0 Y12-19l02.p1k chr14 137 211 519164 519163 F 75 0.00 1289 ambiguous_trans 22 ALIGNMENT 283 Y12-19l02.p1k chr10 212 544 538017 538349 F 333 97.00 1289 ambiguous_trans_ua 4 ALIGNMENT 282 Y12-19l02.p1k chr05 210 544 487827 488161 F 335 97.01 1289 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-19l02.p1k chr04 137 211 871816 871815 F 75 0.00 1289 ambiguous_trans 17 ALIGNMENT 273 Y12-19l02.p1k chr12 544 212 976253 976585 C 333 96.40 1289 ambiguous_trans 14 ALIGNMENT 705 Y12-19l02.q1k chr15 954 4 468187 469127 C 951 93.59 1159 accept 0 ALIGNMENT 0 Y12-19l02.p1k chr05 210 137 436275 436274 C 74 0.00 1289 ambiguous_trans_ua 20 ALIGNMENT 279 Y12-19l02.p1k chr07 544 212 568744 569076 C 333 97.00 1289 ambiguous_trans 6 ALIGNMENT 0 Y12-19l02.p1k chr06 137 280 137720 137719 F 144 0.00 1289 ambiguous_trans 25 ALIGNMENT 279 Y12-19l02.p1k chr12 540 212 981368 981696 C 329 97.26 1289 ambiguous_trans 13 ALIGNMENT 0 Y12-19l02.p1k chr10 244 137 537949 537948 C 108 0.00 1289 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-19l02.p1k chr12 211 137 981697 981696 C 75 0.00 1289 ambiguous_trans 13 ALIGNMENT 0 Y12-19l02.p1k chr15 137 211 975909 975908 F 75 0.00 1289 ambiguous_trans 15 ALIGNMENT 0 Y12-19l02.p1k chr07 137 211 811452 811451 F 75 0.00 1289 ambiguous_trans 11 ALIGNMENT 282 Y12-19l02.p1k chr06 212 540 143535 143863 F 329 97.26 1289 ambiguous_trans 10 ALIGNMENT 250 Y12-19l02.p1k chr03 533 212 168605 168928 C 322 95.03 1289 ambiguous_trans_ua 21 ALIGNMENT 0 Y12-19l02.p1k chr03 137 211 90437 90436 F 75 0.00 1289 ambiguous_trans 2 ALIGNMENT 282 Y12-19l02.p1k chr06 212 540 137908 138236 F 329 97.26 1289 ambiguous_trans 9 ALIGNMENT 0 Y12-19l02.p1k chr03 211 137 168929 168928 C 75 0.00 1289 ambiguous_trans_ua 21 ALIGNMENT 278 Y12-19l02.p1k chr15 212 539 975909 976236 F 328 97.26 1289 ambiguous_trans 15 ALIGNMENT 280 Y12-19l02.p1k chr13 211 540 768546 768875 F 330 97.27 1289 ambiguous_trans_ua 7 ALIGNMENT 268 Y12-19l02.p1k chr05 540 211 435945 436274 C 330 96.06 1289 ambiguous_trans_ua 20 ALIGNMENT 282 Y12-19l02.p1k chr07 212 540 811452 811780 F 329 97.26 1289 ambiguous_trans 11 ALIGNMENT 613 Y12-19l03.p1k chr04 72 894 571797 572607 F 823 93.68 1252 accept 0 ALIGNMENT 904 Y12-19l03.q1k chr04 1074 11 575488 576533 C 1064 96.99 1252 accept 0 ALIGNMENT 504 Y12-19l05.p1k chr04 30 891 1085957 1086812 F 862 87.47 1289 accept_chi 0 ALIGNMENT 200 Y12-19l05.q1k chr06 281 2 69360 69642 C 280 91.07 1207 accept_chi 1 ALIGNMENT 638 Y12-19l06.p1k chr12 105 987 453950 454822 F 883 92.07 1333 accept_chi 0 ALIGNMENT 0 Y12-19l06.q1k chr07 699 747 523534 523581 F 49 0.00 1358 reject_low 3 ALIGNMENT 0 Y12-19l06.q1k chr07 62 392 523229 523228 F 331 0.00 1358 reject_low 3 ALIGNMENT 68 Y12-19l06.q1k chr07 393 698 523229 523533 F 306 74.84 1358 reject_low 3 ALIGNMENT 209 Y12-19l06.q1k chr04 5 317 1260737 1261048 F 313 89.78 1358 accept_chi 2 ALIGNMENT 20 Y12-19l06.q1k chr07 748 772 523582 523605 F 25 96.00 1358 reject_low 3 ALIGNMENT 638 Y12-19l06.p1k chr12 105 987 463087 463959 F 883 92.07 1333 accept_chi 1 ALIGNMENT 985 Y12-19l07.p1k chr04 24 1148 1085944 1087076 F 1125 97.24 1215 accept 0 ALIGNMENT 957 Y12-19l07.q1k chr04 1236 40 1090588 1091792 C 1197 93.98 1258 accept 0 ALIGNMENT 1065 Y12-19l08.p1k chr12 23 1221 463010 464216 F 1199 97.00 1253 accept 1 ALIGNMENT 428 Y12-19l08.q1k chr12 579 34 457788 458330 C 546 93.41 1005 accept 0 ALIGNMENT 1065 Y12-19l08.p1k chr12 23 1221 453873 455079 F 1199 97.00 1253 accept 0 ALIGNMENT 428 Y12-19l08.q1k chr12 579 34 466925 467467 C 546 93.41 1005 accept 1 ALIGNMENT 814 Y12-19l10.q1k chr04 36 992 95933 96904 F 957 95.82 1228 accept 0 ALIGNMENT 939 Y12-19l10.p1k chr04 1174 33 98844 99980 C 1142 95.53 1192 accept 0 ALIGNMENT 871 Y12-19l11.q1k chr06 28 1031 201290 202292 F 1004 96.51 1320 accept_chi 0 ALIGNMENT 179 Y12-19l11.p1k chr16 19 384 549393 549762 F 366 84.15 1284 accept_chi 1 ALIGNMENT 967 Y12-19l12.p1k chr15 1164 16 533457 534609 C 1149 95.91 1167 accept 0 ALIGNMENT 22 Y12-19l12.p1k chr15 144 88 236965 237021 C 57 84.21 1167 reject_low 1 ALIGNMENT 970 Y12-19l12.q1k chr15 39 1235 532198 533407 F 1197 94.49 1301 accept 0 ALIGNMENT 0 Y12-19l12.p1k chr15 818 145 236966 236965 C 674 0.00 1167 reject_low 1 ALIGNMENT 0 Y12-19l12.p1k chr15 87 62 237022 237021 C 26 0.00 1167 reject_low 1 ALIGNMENT 1027 Y12-19l13.p1k chr04 16 1216 753289 754489 F 1201 96.34 1217 accept_chi 0 ALIGNMENT 915 Y12-19l13.q1k chr16 1136 36 634938 636046 C 1101 94.91 1225 accept_chi 1 ALIGNMENT 952 Y12-19l14.q1k chr10 34 1150 474184 475307 F 1117 95.97 1264 ambiguous_trans 23 ALIGNMENT 964 Y12-19l14.q1k chr05 1150 34 446387 447510 C 1117 96.33 1264 ambiguous_trans 5 ALIGNMENT 964 Y12-19l14.q1k chr14 1150 34 99599 100722 C 1117 96.33 1264 ambiguous_trans 8 ALIGNMENT 957 Y12-19l14.q1k chr01 1150 34 163233 164357 C 1117 96.15 1264 ambiguous_trans 21 ALIGNMENT 958 Y12-19l14.q1k chr16 34 1150 58258 59381 F 1117 96.15 1264 ambiguous_trans 20 ALIGNMENT 954 Y12-19l14.q1k chr16 34 1150 846215 847341 F 1117 96.06 1264 ambiguous_trans 22 ALIGNMENT 964 Y12-19l14.q1k chr04 1150 34 881289 882412 C 1117 96.33 1264 ambiguous_trans 4 ALIGNMENT 964 Y12-19l14.q1k chr16 1150 34 807632 808755 C 1117 96.33 1264 ambiguous_trans 10 ALIGNMENT 964 Y12-19l14.q1k chr05 1150 34 495486 496609 C 1117 96.33 1264 ambiguous_trans 6 ALIGNMENT 958 Y12-19l14.q1k chr13 1150 34 375691 376814 C 1117 96.15 1264 ambiguous_trans 18 ALIGNMENT 961 Y12-19l14.q1k chr13 34 1150 198138 199261 F 1117 96.24 1264 ambiguous_trans 16 ALIGNMENT 958 Y12-19l14.q1k chr10 34 1150 479768 480891 F 1117 96.15 1264 ambiguous_trans 17 ALIGNMENT 967 Y12-19l14.q1k chr13 1150 34 359993 361116 C 1117 96.42 1264 ambiguous_trans 2 ALIGNMENT 964 Y12-19l14.q1k chr15 34 1150 119509 120632 F 1117 96.33 1264 ambiguous_trans 9 ALIGNMENT 937 Y12-19l14.q1k chr16 1150 34 853620 854743 C 1117 95.52 1264 ambiguous_trans 24 ALIGNMENT 964 Y12-19l14.q1k chr04 1150 34 648488 649611 C 1117 96.33 1264 ambiguous_trans 3 ALIGNMENT 961 Y12-19l14.q1k chr08 1150 34 546599 547722 C 1117 96.24 1264 ambiguous_trans 13 ALIGNMENT 761 Y12-19l14.p1k chr13 21 1011 836764 837751 F 991 93.84 1210 accept 0 ALIGNMENT 961 Y12-19l14.q1k chr04 34 1150 1097569 1098692 F 1117 96.24 1264 ambiguous_trans 12 ALIGNMENT 961 Y12-19l14.q1k chr04 1150 34 989710 990833 C 1117 96.24 1264 ambiguous_trans 11 ALIGNMENT 961 Y12-19l14.q1k chr12 1150 34 218076 219199 C 1117 96.24 1264 ambiguous_trans_ua 14 ALIGNMENT 958 Y12-19l14.q1k chr14 34 1150 520967 522090 F 1117 96.15 1264 ambiguous_trans 19 ALIGNMENT 970 Y12-19l14.q1k chr02 34 1150 222843 223966 F 1117 96.51 1264 ambiguous_trans 1 ALIGNMENT 964 Y12-19l14.q1k chr07 1150 34 564838 565961 C 1117 96.33 1264 ambiguous_trans 7 ALIGNMENT 961 Y12-19l14.q1k chr13 34 1150 185971 187094 F 1117 96.24 1264 ambiguous_trans 15 ALIGNMENT 881 Y12-19l15.q1k chr09 1051 46 70434 71445 C 1006 95.92 1248 accept 0 ALIGNMENT 946 Y12-19l15.p1k chr09 31 1179 67340 68485 F 1149 96.00 1179 accept 0 ALIGNMENT 951 Y12-19l16.p1k chr16 1152 31 509748 510865 C 1122 96.79 1164 accept 0 ALIGNMENT 1017 Y12-19l16.q1k chr16 40 1208 507071 508246 F 1169 96.07 1250 accept 0 ALIGNMENT 0 Y12-19l17.q1k chr04 181 272 1282731 1282822 F 92 0.00 1169 reject_low 1 ALIGNMENT 36 Y12-19l17.q1k chr04 40 180 1282590 1282730 F 141 75.89 1169 reject_low 1 ALIGNMENT 508 Y12-19l17.p1k chr15 819 113 939147 939852 C 707 91.65 1117 accept 0 ALIGNMENT 79 Y12-19l17.q1k chr04 273 860 1282823 1283410 F 588 71.77 1169 reject_low 1 ALIGNMENT 890 Y12-19l17.q1k chr15 37 1081 935302 936356 F 1045 95.60 1169 accept 0 ALIGNMENT 1035 Y12-19l18.p1k chr13 1136 26 568602 569713 C 1111 98.38 1139 accept 0 ALIGNMENT 958 Y12-19l18.q1k chr13 29 1162 564422 565557 F 1134 95.50 1226 accept 0 ALIGNMENT 290 Y12-19l19.q1k chr03 604 95 150632 151125 C 510 88.63 925 accept 0 ALIGNMENT 949 Y12-19l19.p1k chr03 20 1184 145705 146856 F 1165 95.36 1201 accept 0 ALIGNMENT 152 Y12-19l20.q1k chr15 33 318 980298 980587 F 286 87.06 1098 reject_low 10 ALIGNMENT 127 Y12-19l20.q1k chr01 33 327 165870 166173 F 295 83.73 1098 reject_low 11 ALIGNMENT 132 Y12-19l20.q1k chr03 47 317 142803 143077 F 271 85.61 1098 reject_low 19 ALIGNMENT 100 Y12-19l20.q1k chr06 314 56 137658 137907 C 259 83.78 1098 reject_low 22 ALIGNMENT 57 Y12-19l20.q1k chr06 317 38 137908 138192 C 280 76.79 1098 reject_low 23 ALIGNMENT 57 Y12-19l20.q1k chr06 317 38 143535 143819 C 280 76.79 1098 reject_low 24 ALIGNMENT 147 Y12-19l20.q1k chr10 318 33 472376 472671 C 286 86.71 1098 reject_low 13 ALIGNMENT 163 Y12-19l20.q1k chr14 33 317 96653 96941 F 285 88.42 1098 reject_low 8 ALIGNMENT 146 Y12-19l20.q1k chr10 317 33 483549 483843 C 285 86.67 1098 reject_low 14 ALIGNMENT 45 Y12-19l20.q1k chr10 34 99 541052 541117 F 66 90.91 1098 reject_low 25 ALIGNMENT 143 Y12-19l20.q1k chr16 33 317 856256 856550 F 285 86.32 1098 reject_low 17 ALIGNMENT 0 Y12-19l20.q1k chr06 323 206 158471 158470 C 118 0.00 1098 reject_low 21 ALIGNMENT 166 Y12-19l20.q1k chr02 317 33 265161 265449 C 285 88.77 1098 reject_low 1 ALIGNMENT 107 Y12-19l20.q1k chr06 205 33 158470 158641 C 173 90.17 1098 reject_low 21 ALIGNMENT 121 Y12-19l20.q1k chr01 33 317 160282 160575 F 285 83.51 1098 reject_low 20 ALIGNMENT 143 Y12-19l20.q1k chr16 33 317 850668 850962 F 285 86.32 1098 reject_low 16 ALIGNMENT 163 Y12-19l20.q1k chr13 317 33 189752 190040 C 285 88.42 1098 reject_low 7 ALIGNMENT 166 Y12-19l20.q1k chr15 317 33 600403 600691 C 285 88.77 1098 reject_low 3 ALIGNMENT 166 Y12-19l20.q1k chr07 33 317 817441 817729 F 285 88.77 1098 reject_low 2 ALIGNMENT 142 Y12-19l20.q1k chr10 317 39 540680 540961 C 279 86.02 1098 reject_low 18 ALIGNMENT 947 Y12-19l20.p1k chr02 33 1144 322506 323611 F 1112 96.13 1144 accept 0 ALIGNMENT 150 Y12-19l20.q1k chr03 33 322 124174 124467 F 290 86.55 1098 reject_low 9 ALIGNMENT 163 Y12-19l20.q1k chr08 33 317 543653 543941 F 285 88.42 1098 reject_low 5 ALIGNMENT 143 Y12-19l20.q1k chr13 33 317 372739 373033 F 285 86.32 1098 reject_low 15 ALIGNMENT 43 Y12-19l20.q1k chr07 99 38 817303 817363 C 62 91.94 1098 reject_low 26 ALIGNMENT 0 Y12-19l20.q1k chr10 100 323 541117 541116 F 224 0.00 1098 reject_low 25 ALIGNMENT 464 Y12-19l20.q1k chr02 698 31 326680 327354 C 668 91.17 1098 accept 0 ALIGNMENT 163 Y12-19l20.q1k chr13 317 33 184170 184458 C 285 88.42 1098 reject_low 6 ALIGNMENT 148 Y12-19l20.q1k chr07 319 33 535762 536058 C 287 86.76 1098 reject_low 12 ALIGNMENT 0 Y12-19l20.q1k chr07 323 100 817304 817303 C 224 0.00 1098 reject_low 26 ALIGNMENT 164 Y12-19l20.q1k chr14 33 318 102235 102524 F 286 88.46 1098 reject_low 4 ALIGNMENT 939 Y12-19l21.p1k chr05 26 1113 389246 390326 F 1088 96.78 1113 accept 0 ALIGNMENT 360 Y12-19l22.q1k chr02 310 784 657378 657843 F 475 92.84 1333 accept 0 ALIGNMENT 977 Y12-19l23.p1k chr04 24 1089 362716 363783 F 1066 97.84 1106 accept 0 ALIGNMENT 345 Y12-19l24.q1k chr06 61 799 51025 51759 F 739 83.36 1272 accept 0 ALIGNMENT 893 Y12-19m01.q1k chr15 26 1077 204763 205800 F 1052 96.48 1221 accept 0 ALIGNMENT 806 Y12-19m01.p1k chr15 1010 28 208110 209087 C 983 95.42 1142 accept 0 ALIGNMENT 0 Y12-19m02.p1k chr04 649 160 471850 471849 C 490 0.00 1264 reject_low 1 ALIGNMENT 118 Y12-19m02.p1k chr04 159 23 471849 471986 C 137 96.35 1264 reject_low 1 ALIGNMENT 681 Y12-19m02.q1k chr02 56 926 293950 294806 F 871 94.72 1396 accept 0 ALIGNMENT 643 Y12-19m02.p1k chr02 863 23 299456 300302 C 841 93.58 1264 accept 0 ALIGNMENT 700 Y12-19m03.p1k chr12 161 989 624056 624873 F 829 96.50 1295 accept 0 ALIGNMENT 563 Y12-19m03.q1k chr12 793 78 629457 630167 C 716 94.41 1348 accept 0 ALIGNMENT 553 Y12-19m04.p1k chr12 175 942 305373 306125 F 768 93.75 1290 accept 0 ALIGNMENT 588 Y12-19m05.p1k chr02 33 735 61197 61891 F 703 96.30 1307 accept 0 ALIGNMENT 591 Y12-19m06.p1k chr01 118 999 147711 148588 F 882 90.14 1217 accept 0 ALIGNMENT 0 Y12-19m07.q1k chr02 62 528 464124 464123 F 467 0.00 1233 reject_low 1 ALIGNMENT 0 Y12-19m07.q1k chr02 579 801 464173 464172 F 223 0.00 1233 reject_low 1 ALIGNMENT 24 Y12-19m07.q1k chr02 529 578 464124 464173 F 50 90.00 1233 reject_low 1 ALIGNMENT 918 Y12-19m07.p1k chr02 15 1132 61182 62302 F 1118 95.08 1133 accept 0 ALIGNMENT 960 Y12-19m07.q1k chr02 1163 36 65356 66472 C 1128 96.01 1233 accept 0 ALIGNMENT 982 Y12-19m08.p1k chr01 20 1151 147617 148748 F 1132 96.55 1167 accept 0 ALIGNMENT 937 Y12-19m08.q1k chr01 1281 37 151107 152348 C 1245 93.90 1281 accept 0 ALIGNMENT 881 Y12-19m09.q1k chr13 40 1142 352543 353640 F 1103 94.11 1260 accept 0 ALIGNMENT 946 Y12-19m09.p1k chr13 1127 26 355397 356501 C 1102 97.01 1148 accept 0 ALIGNMENT 921 Y12-19m11.q1k chr15 1189 37 903965 905104 C 1153 95.06 1213 accept 0 ALIGNMENT 948 Y12-19m11.p1k chr15 21 1136 900710 901834 F 1116 96.33 1136 accept 0 ALIGNMENT 23 Y12-19m12.q1k chr03 51 116 270928 270993 F 66 78.79 1223 reject_low 2 ALIGNMENT 0 Y12-19m12.q1k chr08 808 901 365404 365403 F 94 0.00 1223 reject_low 8 ALIGNMENT 0 Y12-19m12.q1k chr04 901 807 604238 604237 C 95 0.00 1223 reject_low 6 ALIGNMENT 0 Y12-19m12.q1k chr05 62 764 309001 309000 F 703 0.00 1223 reject_low 9 ALIGNMENT 0 Y12-19m12.q1k chr05 792 901 309027 309026 F 110 0.00 1223 reject_low 9 ALIGNMENT 27 Y12-19m12.q1k chr04 806 765 604237 604278 C 42 95.24 1223 reject_low 6 ALIGNMENT 28 Y12-19m12.q1k chr13 808 762 209870 209916 C 47 93.62 1223 reject_low 4 ALIGNMENT 973 Y12-19m12.p1k chr03 1122 21 274495 275588 C 1102 97.10 1132 accept 0 ALIGNMENT 22 Y12-19m12.q1k chr05 765 791 309001 309027 F 27 100.00 1223 reject_low 9 ALIGNMENT 30 Y12-19m12.q1k chr03 180 290 270709 270819 F 111 76.58 1223 reject_low 1 ALIGNMENT 0 Y12-19m12.q1k chr11 901 804 280029 280028 C 98 0.00 1223 reject_low 7 ALIGNMENT 0 Y12-19m12.q1k chr03 291 901 270819 270818 F 611 0.00 1223 reject_low 1 ALIGNMENT 0 Y12-19m12.q1k chr04 764 62 604279 604278 C 703 0.00 1223 reject_low 6 ALIGNMENT 0 Y12-19m12.q1k chr03 62 179 270709 270708 F 118 0.00 1223 reject_low 1 ALIGNMENT 22 Y12-19m12.q1k chr08 765 807 365362 365404 F 43 90.70 1223 reject_low 8 ALIGNMENT 885 Y12-19m12.q1k chr03 31 1150 270734 271843 F 1120 94.82 1223 accept 0 ALIGNMENT 0 Y12-19m12.q1k chr15 764 62 227331 227330 C 703 0.00 1223 reject_low 3 ALIGNMENT 23 Y12-19m12.q1k chr11 803 764 280028 280067 C 40 92.50 1223 reject_low 7 ALIGNMENT 0 Y12-19m12.q1k chr15 809 901 63096 63095 F 93 0.00 1223 reject_low 5 ALIGNMENT 0 Y12-19m12.q1k chr03 117 901 270993 270992 F 785 0.00 1223 reject_low 2 ALIGNMENT 0 Y12-19m12.q1k chr15 62 767 63056 63055 F 706 0.00 1223 reject_low 5 ALIGNMENT 0 Y12-19m12.q1k chr11 763 62 280068 280067 C 702 0.00 1223 reject_low 7 ALIGNMENT 30 Y12-19m12.q1k chr15 768 808 63056 63096 F 41 97.56 1223 reject_low 5 ALIGNMENT 0 Y12-19m12.q1k chr13 761 62 209917 209916 C 700 0.00 1223 reject_low 4 ALIGNMENT 0 Y12-19m12.q1k chr15 901 809 227288 227287 C 93 0.00 1223 reject_low 3 ALIGNMENT 0 Y12-19m12.q1k chr13 901 809 209871 209870 C 93 0.00 1223 reject_low 4 ALIGNMENT 32 Y12-19m12.q1k chr15 808 765 227287 227330 C 44 97.73 1223 reject_low 3 ALIGNMENT 0 Y12-19m12.q1k chr08 62 764 365362 365361 F 703 0.00 1223 reject_low 8 ALIGNMENT 978 Y12-19m13.q1k chr06 36 1207 154550 155712 F 1172 95.99 1212 accept 0 ALIGNMENT 959 Y12-19m13.p1k chr06 1119 30 158604 159688 C 1090 97.34 1119 accept 0 ALIGNMENT 1031 Y12-19m15.q1k chr12 1190 38 825114 826259 C 1153 96.79 1231 accept 0 ALIGNMENT 995 Y12-19m15.p1k chr12 18 1115 820961 822064 F 1098 97.81 1130 accept 0 ALIGNMENT 378 Y12-19m16.p1k chr03 125 690 182709 183288 F 566 89.58 1067 accept 0 ALIGNMENT 947 Y12-19m17.p1k chr07 18 1107 841898 842995 F 1090 96.88 1108 accept 0 ALIGNMENT 477 Y12-19m17.q1k chr07 609 34 845894 846473 C 576 93.75 999 accept 0 ALIGNMENT 686 Y12-19m18.q1k chr07 963 27 807871 808807 C 937 92.42 1053 accept 0 ALIGNMENT 966 Y12-19m18.p1k chr07 19 1093 806424 807502 F 1075 96.28 1131 accept 0 ALIGNMENT 38 Y12-19m19.p1k chr16 21 131 650467 650577 F 111 93.69 1098 reject_low 2 ALIGNMENT 0 Y12-19m19.p1k chr09 838 114 105769 105768 C 725 0.00 1098 reject_low 9 ALIGNMENT 34 Y12-19m19.p1k chr04 20 124 778728 778831 F 105 95.24 1098 reject_low 3 ALIGNMENT 26 Y12-19m19.p1k chr13 21 124 587629 587732 F 104 92.31 1098 reject_low 6 ALIGNMENT 26 Y12-19m19.p1k chr10 115 57 470036 470094 C 59 98.31 1098 reject_low 10 ALIGNMENT 51 Y12-19m19.p1k chr13 20 124 86950 87054 F 105 99.05 1098 reject_low 1 ALIGNMENT 0 Y12-19m19.p1k chr10 838 116 470037 470036 C 723 0.00 1098 reject_low 10 ALIGNMENT 34 Y12-19m19.p1k chr02 50 120 68280 68350 F 71 100.00 1098 reject_low 5 ALIGNMENT 26 Y12-19m19.p1k chr09 113 55 105768 105826 C 59 100.00 1098 reject_low 9 ALIGNMENT 0 Y12-19m19.p1k chr04 125 838 778831 778830 F 714 0.00 1098 reject_low 3 ALIGNMENT 0 Y12-19m19.p1k chr16 132 838 650577 650576 F 707 0.00 1098 reject_low 2 ALIGNMENT 0 Y12-19m19.p1k chr06 838 71 186209 186208 C 768 0.00 1098 reject_low 8 ALIGNMENT 20 Y12-19m19.p1k chr06 70 21 186208 186257 C 50 98.00 1098 reject_low 8 ALIGNMENT 0 Y12-19m19.p1k chr06 838 130 186201 186200 C 709 0.00 1098 reject_low 7 ALIGNMENT 946 Y12-19m19.p1k chr06 82 1095 73352 74371 F 1014 98.13 1098 accept 0 ALIGNMENT 26 Y12-19m19.p1k chr06 129 71 186200 186258 C 59 94.92 1098 reject_low 7 ALIGNMENT 0 Y12-19m19.p1k chr13 125 838 587732 587731 F 714 0.00 1098 reject_low 6 ALIGNMENT 0 Y12-19m19.p1k chr02 121 838 68350 68349 F 718 0.00 1098 reject_low 5 ALIGNMENT 0 Y12-19m19.p1k chr05 838 129 142886 142885 C 710 0.00 1098 reject_low 4 ALIGNMENT 931 Y12-19m19.q1k chr06 1108 34 76540 77628 C 1075 95.81 1222 accept 0 ALIGNMENT 0 Y12-19m19.p1k chr06 62 81 73352 73351 F 20 0.00 1098 accept 0 ALIGNMENT 0 Y12-19m19.p1k chr13 125 838 87054 87053 F 714 0.00 1098 reject_low 1 ALIGNMENT 30 Y12-19m19.p1k chr05 128 24 142885 142989 C 105 91.43 1098 reject_low 4 ALIGNMENT 1039 Y12-19m20.q1k chr15 1237 37 200774 201984 C 1201 96.42 1268 accept 0 ALIGNMENT 981 Y12-19m20.p1k chr15 23 1137 197311 198419 F 1115 97.04 1137 accept 0 ALIGNMENT 964 Y12-19m21.p1k chr02 21 1108 217561 218643 F 1088 97.52 1112 accept_trans 0 ALIGNMENT 932 Y12-19m21.q1k chr02 1178 35 227455 228599 C 1144 94.93 1180 accept_trans 0 ALIGNMENT 303 Y12-19m22.p1k chr13 354 686 357003 357335 F 333 98.80 1122 reject_low 6 ALIGNMENT 0 Y12-19m22.p1k chr02 354 62 226956 226955 C 293 0.00 1122 reject_low 9 ALIGNMENT 0 Y12-19m22.p1k chr07 354 62 932023 932022 C 293 0.00 1122 reject_low 13 ALIGNMENT 0 Y12-19m22.p1k chr15 788 687 600404 600403 C 102 0.00 1122 reject_low 21 ALIGNMENT 20 Y12-19m22.p1k chr11 742 710 457780 457812 C 33 93.94 1122 reject_low 24 ALIGNMENT 0 Y12-19m22.p1k chr12 687 788 215418 215417 F 102 0.00 1122 reject_low 22 ALIGNMENT 264 Y12-19m22.p1k chr12 375 686 215101 215418 F 312 97.12 1122 reject_low 22 ALIGNMENT 0 Y12-19m22.p1k chr02 788 689 221039 221038 C 100 0.00 1122 reject_low 14 ALIGNMENT 0 Y12-19m22.p1k chr01 62 739 182823 182822 F 678 0.00 1122 reject_low 2 ALIGNMENT 28 Y12-19m22.p1k chr01 56 18 183763 183801 C 39 89.74 1122 reject_low 1 ALIGNMENT 0 Y12-19m22.p1k chr07 108 57 402540 402590 C 52 0.00 1122 accept 0 ALIGNMENT 287 Y12-19m22.p1k chr13 697 375 184158 184481 C 323 98.45 1122 reject_low 4 ALIGNMENT 287 Y12-19m22.p1k chr08 375 686 543630 543941 F 312 99.36 1122 reject_low 19 ALIGNMENT 0 Y12-19m22.p1k chr13 62 354 362586 362585 F 293 0.00 1122 reject_low 10 ALIGNMENT 0 Y12-19m22.p1k chr14 687 788 102523 102522 F 102 0.00 1122 reject_low 11 ALIGNMENT 0 Y12-19m22.p1k chr14 62 354 102192 102191 F 293 0.00 1122 reject_low 11 ALIGNMENT 0 Y12-19m22.p1k chr02 788 689 259575 259574 C 100 0.00 1122 reject_low 16 ALIGNMENT 302 Y12-19m22.p1k chr14 355 686 102192 102523 F 332 98.80 1122 reject_low 11 ALIGNMENT 287 Y12-19m22.p1k chr15 686 375 600403 600714 C 312 99.36 1122 reject_low 21 ALIGNMENT 0 Y12-19m22.p1k chr15 374 62 595133 595132 C 313 0.00 1122 reject_low 17 ALIGNMENT 0 Y12-19m22.p1k chr07 353 62 535548 535547 C 292 0.00 1122 reject_low 8 ALIGNMENT 0 Y12-19m22.p1k chr15 438 62 594760 594759 C 377 0.00 1122 reject_low 27 ALIGNMENT 0 Y12-19m22.p1k chr12 62 374 215101 215100 F 313 0.00 1122 reject_low 22 ALIGNMENT 0 Y12-19m22.p1k chr15 374 62 600715 600714 C 313 0.00 1122 reject_low 21 ALIGNMENT 0 Y12-19m22.p1k chr01 687 788 166163 166162 F 102 0.00 1122 reject_low 23 ALIGNMENT 115 Y12-19m22.p1k chr01 686 355 189420 189751 C 332 81.33 1122 reject_low 26 ALIGNMENT 0 Y12-19m22.p1k chr13 788 698 184159 184158 C 91 0.00 1122 reject_low 4 ALIGNMENT 296 Y12-19m22.p1k chr07 686 355 931691 932022 C 332 98.19 1122 reject_low 13 ALIGNMENT 0 Y12-19m22.p1k chr08 62 374 543630 543629 F 313 0.00 1122 reject_low 19 ALIGNMENT 0 Y12-19m22.p1k chr08 62 353 116415 116414 F 292 0.00 1122 reject_low 12 ALIGNMENT 300 Y12-19m22.p1k chr08 354 686 116415 116747 F 333 98.50 1122 reject_low 12 ALIGNMENT 0 Y12-19m22.p1k chr13 687 788 357335 357334 F 102 0.00 1122 reject_low 6 ALIGNMENT 0 Y12-19m22.p1k chr02 374 62 259888 259887 C 313 0.00 1122 reject_low 16 ALIGNMENT 0 Y12-19m22.p1k chr07 62 739 401829 401828 F 678 0.00 1122 reject_low 3 ALIGNMENT 301 Y12-19m22.p1k chr07 687 354 535214 535547 C 334 98.50 1122 reject_low 8 ALIGNMENT 0 Y12-19m22.p1k chr07 788 687 931692 931691 C 102 0.00 1122 reject_low 13 ALIGNMENT 304 Y12-19m22.p1k chr11 350 686 517090 517426 F 337 98.52 1122 reject_low 5 ALIGNMENT 0 Y12-19m22.p1k chr13 687 788 362917 362916 F 102 0.00 1122 reject_low 10 ALIGNMENT 0 Y12-19m22.p1k chr11 687 788 458114 458113 F 102 0.00 1122 reject_low 15 ALIGNMENT 0 Y12-19m22.p1k chr15 788 569 594631 594630 C 220 0.00 1122 reject_low 27 ALIGNMENT 0 Y12-19m22.p1k chr11 709 62 457813 457812 C 648 0.00 1122 reject_low 24 ALIGNMENT 82 Y12-19m22.p1k chr15 568 439 594630 594759 C 130 90.00 1122 reject_low 27 ALIGNMENT 0 Y12-19m22.p1k chr07 62 374 817418 817417 F 313 0.00 1122 reject_low 18 ALIGNMENT 0 Y12-19m22.p1k chr14 656 62 102579 102578 C 595 0.00 1122 reject_low 29 ALIGNMENT 0 Y12-19m22.p1k chr08 687 788 543941 543940 F 102 0.00 1122 reject_low 19 ALIGNMENT 0 Y12-19m22.p1k chr11 62 349 517090 517089 F 288 0.00 1122 reject_low 5 ALIGNMENT 287 Y12-19m22.p1k chr13 686 375 189752 190063 C 312 99.36 1122 reject_low 20 ALIGNMENT 302 Y12-19m22.p1k chr13 355 686 362586 362917 F 332 98.80 1122 reject_low 10 ALIGNMENT 423 Y12-19m22.p1k chr01 686 109 183136 183711 C 578 93.08 1122 reject_low 1 ALIGNMENT 0 Y12-19m22.p1k chr07 788 688 535215 535214 C 101 0.00 1122 reject_low 8 ALIGNMENT 0 Y12-19m22.p1k chr11 788 743 457781 457780 C 46 0.00 1122 reject_low 24 ALIGNMENT 0 Y12-19m22.p1k chr14 788 687 102550 102549 C 102 0.00 1122 reject_low 29 ALIGNMENT 0 Y12-19m22.p1k chr01 788 687 189421 189420 C 102 0.00 1122 reject_low 26 ALIGNMENT 45 Y12-19m22.p1k chr07 740 805 401829 401894 F 66 90.91 1122 reject_low 3 ALIGNMENT 29 Y12-19m22.p1k chr14 686 657 102549 102578 C 30 100.00 1122 reject_low 29 ALIGNMENT 0 Y12-19m22.p1k chr07 377 62 817388 817387 C 316 0.00 1122 reject_low 28 ALIGNMENT 288 Y12-19m22.p1k chr15 687 375 594820 595132 C 313 99.36 1122 reject_low 17 ALIGNMENT 205 Y12-19m22.p1k chr01 355 686 165827 166163 F 332 89.46 1122 reject_low 23 ALIGNMENT 0 Y12-19m22.p1k chr08 687 788 116747 116746 F 102 0.00 1122 reject_low 12 ALIGNMENT 303 Y12-19m22.p1k chr14 354 686 96609 96941 F 333 98.80 1122 reject_low 7 ALIGNMENT 0 Y12-19m22.p1k chr07 687 788 817729 817728 F 102 0.00 1122 reject_low 18 ALIGNMENT 21 Y12-19m22.p1k chr01 56 27 184885 184914 C 30 90.00 1122 reject_low 25 ALIGNMENT 0 Y12-19m22.p1k chr13 788 687 189753 189752 C 102 0.00 1122 reject_low 20 ALIGNMENT 568 Y12-19m22.p1k chr07 760 109 401888 402539 C 652 97.55 1122 accept 0 ALIGNMENT 302 Y12-19m22.p1k chr02 686 355 226624 226955 C 332 98.80 1122 reject_low 9 ALIGNMENT 979 Y12-19m22.q1k chr07 12 1138 398381 399506 F 1127 96.45 1170 accept 0 ALIGNMENT 0 Y12-19m22.p1k chr07 788 761 401889 401888 C 28 0.00 1122 accept 0 ALIGNMENT 285 Y12-19m22.p1k chr02 688 375 259574 259887 C 314 99.04 1122 reject_low 16 ALIGNMENT 0 Y12-19m22.p1k chr14 62 353 96609 96608 F 292 0.00 1122 reject_low 7 ALIGNMENT 0 Y12-19m22.p1k chr01 788 687 183137 183136 C 102 0.00 1122 reject_low 1 ALIGNMENT 0 Y12-19m22.p1k chr01 108 57 183712 183762 C 52 0.00 1122 reject_low 1 ALIGNMENT 0 Y12-19m22.p1k chr13 374 62 190064 190063 C 313 0.00 1122 reject_low 20 ALIGNMENT 291 Y12-19m22.p1k chr02 688 364 221038 221364 C 325 98.46 1122 reject_low 14 ALIGNMENT 285 Y12-19m22.p1k chr11 354 686 457782 458114 F 333 97.00 1122 reject_low 15 ALIGNMENT 287 Y12-19m22.p1k chr07 375 686 817418 817729 F 312 99.36 1122 reject_low 18 ALIGNMENT 0 Y12-19m22.p1k chr02 363 62 221365 221364 C 302 0.00 1122 reject_low 14 ALIGNMENT 0 Y12-19m22.p1k chr11 687 788 517426 517425 F 102 0.00 1122 reject_low 5 ALIGNMENT 0 Y12-19m22.p1k chr01 354 62 189752 189751 C 293 0.00 1122 reject_low 26 ALIGNMENT 0 Y12-19m22.p1k chr01 788 57 184886 184885 C 732 0.00 1122 reject_low 25 ALIGNMENT 0 Y12-19m22.p1k chr02 788 687 226625 226624 C 102 0.00 1122 reject_low 9 ALIGNMENT 0 Y12-19m22.p1k chr01 62 354 165827 165826 F 293 0.00 1122 reject_low 23 ALIGNMENT 0 Y12-19m22.p1k chr15 788 688 594821 594820 C 101 0.00 1122 reject_low 17 ALIGNMENT 0 Y12-19m22.p1k chr07 788 490 817279 817278 C 299 0.00 1122 reject_low 28 ALIGNMENT 22 Y12-19m22.p1k chr07 56 18 402591 402629 C 39 84.62 1122 accept 0 ALIGNMENT 61 Y12-19m22.p1k chr07 489 378 817278 817387 C 112 87.50 1122 reject_low 28 ALIGNMENT 0 Y12-19m22.p1k chr13 62 353 357003 357002 F 292 0.00 1122 reject_low 6 ALIGNMENT 0 Y12-19m22.p1k chr13 374 62 184482 184481 C 313 0.00 1122 reject_low 4 ALIGNMENT 0 Y12-19m22.p1k chr11 62 353 457782 457781 F 292 0.00 1122 reject_low 15 ALIGNMENT 96 Y12-19m22.p1k chr01 740 872 182823 182955 F 133 91.73 1122 reject_low 2 ALIGNMENT 0 Y12-19m22.p1k chr14 687 788 96941 96940 F 102 0.00 1122 reject_low 7 ALIGNMENT 826 Y12-19m23.q1k chr11 35 1080 605860 606906 F 1046 93.31 1121 accept 0 ALIGNMENT 906 Y12-19m23.p1k chr11 1062 21 608967 610009 C 1042 96.74 1064 accept 0 ALIGNMENT 717 Y12-19n02.q1k chr14 49 968 428264 429164 F 920 95.11 1343 accept 0 ALIGNMENT 431 Y12-19n02.p1k chr14 742 187 433941 434494 C 556 93.17 1267 accept 0 ALIGNMENT 385 Y12-19n04.q1k chr15 638 46 638514 639097 C 593 90.22 1436 accept 0 ALIGNMENT 719 Y12-19n05.q1k chr16 48 981 483944 484872 F 934 93.25 1332 accept 0 ALIGNMENT 363 Y12-19n05.q1k chr07 789 48 480915 481655 C 742 83.42 1332 reject_low 1 ALIGNMENT 873 Y12-19n10.q1k chr12 29 1024 521377 522390 F 996 96.79 1199 accept 0 ALIGNMENT 191 Y12-19n10.p1k chr04 480 737 1450206 1450463 F 258 91.47 1164 reject_low 1 ALIGNMENT 0 Y12-19n10.p1k chr04 62 479 1450206 1450205 F 418 0.00 1164 reject_low 1 ALIGNMENT 988 Y12-19n10.p1k chr12 1129 20 522613 523735 C 1110 97.57 1164 accept 0 ALIGNMENT 0 Y12-19n10.p1k chr04 738 833 1450463 1450462 F 96 0.00 1164 reject_low 1 ALIGNMENT 252 Y12-19n11.p1k chr09 597 261 129975 130309 C 337 91.99 1035 accept 0 ALIGNMENT 984 Y12-19n12.p1k chr13 1170 20 52277 53424 C 1151 96.52 1170 accept 0 ALIGNMENT 867 Y12-19n12.q1k chr13 57 1145 48595 49693 F 1089 93.85 1248 accept 0 ALIGNMENT 254 Y12-19n13.q1k chr07 199 559 319957 320316 F 361 90.58 1446 accept 0 ALIGNMENT 614 Y12-19n13.p1k chr07 1141 26 323556 324698 C 1116 87.10 1161 accept 0 ALIGNMENT 928 Y12-19n14.p1k chr05 1097 32 327360 328430 C 1066 96.44 1161 accept_chi 0 ALIGNMENT 554 Y12-19n14.q1k chr14 39 759 139858 140567 F 721 93.34 1098 accept_chi 1 ALIGNMENT 866 Y12-19n18.q1k chr06 33 1137 236004 237093 F 1105 93.85 1220 accept 0 ALIGNMENT 953 Y12-19n18.p1k chr06 1136 18 239192 240313 C 1119 96.25 1136 accept 0 ALIGNMENT 959 Y12-19n19.p1k chr12 23 1129 988897 990006 F 1107 96.03 1136 accept 0 ALIGNMENT 851 Y12-19n19.q1k chr12 1203 35 992689 993859 C 1169 92.64 1253 accept 0 ALIGNMENT 551 Y12-19n20.p1k chr12 933 159 707246 708031 C 775 90.58 1089 accept 0 ALIGNMENT 486 Y12-19n20.q1k chr12 31 647 703022 703651 F 617 93.35 1015 accept 0 ALIGNMENT 356 Y12-19n23.q1k chr04 695 235 945353 945808 C 461 93.71 1236 accept 0 ALIGNMENT 926 Y12-19n23.p1k chr04 20 1080 940009 941077 F 1061 96.70 1089 accept 0 ALIGNMENT 373 Y12-19n24.q1k chr12 6 640 449356 449991 F 635 86.77 1160 accept 0 ALIGNMENT 774 Y12-19n24.p1k chr12 978 22 452957 453904 C 957 94.67 1112 accept 0 ALIGNMENT 774 Y12-19n24.p1k chr12 978 22 462094 463041 C 957 94.67 1112 reject_low 1 ALIGNMENT 594 Y12-19o02.q1k chr12 53 790 841009 841740 F 738 95.39 1432 accept 0 ALIGNMENT 195 Y12-19o02.p1k chr12 432 96 846448 846784 C 337 87.24 1575 accept 0 ALIGNMENT 615 Y12-19o05.q1k chr15 731 20 894353 895063 C 712 96.63 1358 accept 0 ALIGNMENT 657 Y12-19o07.p1k chr02 32 821 61200 61983 F 790 95.82 1214 accept 0 ALIGNMENT 342 Y12-19o08.p1k chr01 371 1031 147876 148523 F 661 85.78 1339 accept 0 ALIGNMENT 365 Y12-19o09.q1k chr13 28 883 351096 351945 F 856 81.89 1308 accept 0 ALIGNMENT 292 Y12-19o10.p1k chr10 55 536 614616 615095 F 482 88.38 1458 accept 0 ALIGNMENT 459 Y12-19o10.q1k chr10 722 1 619775 620485 C 722 90.30 1306 accept 0 ALIGNMENT 609 Y12-19o11.q1k chr07 1098 32 445298 446345 C 1067 87.54 1264 accept 0 ALIGNMENT 359 Y12-19o12.q1k chr15 652 6 875427 876068 C 647 86.40 1242 accept 0 ALIGNMENT 765 Y12-19o13.q1k chr04 966 35 1125298 1126220 C 932 95.17 1275 accept 0 ALIGNMENT 319 Y12-19o14.p1k chr15 655 161 128635 129110 C 495 92.12 1215 accept 0 ALIGNMENT 1087 Y12-19o14.q1k chr15 31 1219 123894 125078 F 1189 97.73 1220 accept 0 ALIGNMENT 108 Y12-19o15.q1k chrm 30 256 20631 20857 F 227 83.26 1276 accept 0 ALIGNMENT 206 Y12-19o16.p1k chr15 170 465 62258 62550 F 296 91.55 1397 accept 0 ALIGNMENT 1031 Y12-19o16.q1k chr15 1267 33 64278 65514 C 1235 95.71 1273 accept 0 ALIGNMENT 921 Y12-19o17.p1k chr10 1100 24 96959 98023 C 1077 96.75 1107 accept 0 ALIGNMENT 965 Y12-19o17.q1k chr10 29 1170 92314 93441 F 1142 96.94 1187 accept 0 ALIGNMENT 0 Y12-19o18.q1k chr05 590 336 86601 86600 C 255 0.00 1245 reject_low 16 ALIGNMENT 0 Y12-19o18.q1k chr10 518 242 203690 203689 C 277 0.00 1245 reject_low 10 ALIGNMENT 92 Y12-19o18.q1k chr05 335 242 86600 86693 C 94 100.00 1245 reject_low 16 ALIGNMENT 222 Y12-19o18.q1k chr10 888 519 197464 197834 C 370 87.30 1245 reject_low 9 ALIGNMENT 0 Y12-19o18.q1k chr10 332 590 524007 524006 F 259 0.00 1245 reject_low 19 ALIGNMENT 0 Y12-19o18.q1k chr02 242 514 643479 643478 F 273 0.00 1245 reject_low 2 ALIGNMENT 0 Y12-19o18.q1k chr01 346 345 182612 182956 F 0 0.00 1245 reject_bad_break 0 ALIGNMENT 223 Y12-19o18.q1k chr02 519 889 35848 36219 F 371 87.33 1245 reject_low 6 ALIGNMENT 126 Y12-19o18.q1k chr01 205 348 182470 182614 F 144 96.53 1245|0,3 reject_bad_break 0 ALIGNMENT 645 Y12-19o18.p1k chr01 819 28 192126 192913 C 792 94.70 1156 reject_bad_break 0 ALIGNMENT 220 Y12-19o18.q1k chr08 889 519 85534 85905 C 371 87.06 1245 reject_low 13 ALIGNMENT 92 Y12-19o18.q1k chr13 241 334 259149 259242 F 94 100.00 1245 reject_low 18 ALIGNMENT 0 Y12-19o18.q1k chr10 518 242 197835 197834 C 277 0.00 1245 reject_low 9 ALIGNMENT 89 Y12-19o18.q1k chr10 241 331 523917 524007 F 91 100.00 1245 reject_low 19 ALIGNMENT 0 Y12-19o18.q1k chr07 242 518 931174 931173 F 277 0.00 1245 reject_low 14 ALIGNMENT 225 Y12-19o18.q1k chr08 888 516 91387 91760 C 373 87.40 1245 reject_low 5 ALIGNMENT 0 Y12-19o18.q1k chr07 333 590 561748 561747 F 258 0.00 1245 reject_low 20 ALIGNMENT 222 Y12-19o18.q1k chr16 519 888 436887 437257 F 370 87.30 1245 reject_low 11 ALIGNMENT 223 Y12-19o18.q1k chr02 515 892 643479 643857 F 378 87.04 1245 reject_low 2 ALIGNMENT 0 Y12-19o18.q1k chr14 242 518 632121 632120 F 277 0.00 1245 reject_low 15 ALIGNMENT 219 Y12-19o18.q1k chr14 519 888 632121 632491 F 370 87.03 1245 reject_low 15 ALIGNMENT 0 Y12-19o18.q1k chr07 516 242 111232 111231 C 275 0.00 1245 reject_low 4 ALIGNMENT 0 Y12-19o18.q1k chr13 335 590 259242 259241 F 256 0.00 1245 reject_low 18 ALIGNMENT 0 Y12-19o18.q1k chr08 515 242 91761 91760 C 274 0.00 1245 reject_low 5 ALIGNMENT 147 Y12-19o18.q1k chr01 343 518 182954 183129 F 176 96.59 1245|3,0 reject_bad_break 0 ALIGNMENT 0 Y12-19o18.q1k chr04 518 242 437516 437515 C 277 0.00 1245 reject_low 8 ALIGNMENT 223 Y12-19o18.q1k chr04 888 519 437146 437515 C 370 87.30 1245 reject_low 8 ALIGNMENT 222 Y12-19o18.q1k chr10 888 519 203319 203689 C 370 87.30 1245 reject_low 10 ALIGNMENT 222 Y12-19o18.q1k chr16 519 888 442739 443109 F 370 87.30 1245 reject_low 12 ALIGNMENT 227 Y12-19o18.q1k chr07 888 517 110859 111231 C 372 87.63 1245 reject_low 4 ALIGNMENT 223 Y12-19o18.q1k chr13 889 519 503769 504140 C 371 87.33 1245 reject_low 7 ALIGNMENT 0 Y12-19o18.q1k chr05 242 518 354356 354355 F 277 0.00 1245 reject_low 3 ALIGNMENT 0 Y12-19o18.q1k chr13 242 518 808536 808535 F 277 0.00 1245 reject_low 1 ALIGNMENT 233 Y12-19o18.q1k chr05 519 890 354356 354728 F 372 88.17 1245 reject_low 3 ALIGNMENT 0 Y12-19o18.q1k chr01 519 590 183129 183128 F 72 0.00 1245 reject_bad_break 0 ALIGNMENT 220 Y12-19o18.q1k chr07 519 888 931174 931543 F 370 87.03 1245 reject_low 14 ALIGNMENT 0 Y12-19o18.q1k chr16 242 518 436887 436886 F 277 0.00 1245 reject_low 11 ALIGNMENT 0 Y12-19o18.q1k chr08 518 242 85906 85905 C 277 0.00 1245 reject_low 13 ALIGNMENT 0 Y12-19o18.q1k chr02 242 518 35848 35847 F 277 0.00 1245 reject_low 6 ALIGNMENT 89 Y12-19o18.q1k chr07 242 332 561658 561748 F 91 100.00 1245 reject_low 20 ALIGNMENT 0 Y12-19o18.q1k chr13 518 242 504141 504140 C 277 0.00 1245 reject_low 7 ALIGNMENT 92 Y12-19o18.q1k chr12 241 334 167934 168027 F 94 100.00 1245 reject_low 17 ALIGNMENT 0 Y12-19o18.q1k chr16 242 518 442739 442738 F 277 0.00 1245 reject_low 12 ALIGNMENT 240 Y12-19o18.q1k chr13 519 896 808536 808913 F 378 88.36 1245 reject_low 1 ALIGNMENT 0 Y12-19o18.q1k chr12 335 590 168027 168026 F 256 0.00 1245 reject_low 17 ALIGNMENT 339 Y12-19o19.q1k chr04 227 715 490167 490645 F 489 91.62 1167 accept 0 ALIGNMENT 0 Y12-19o20.p1k chr12 62 672 451419 451418 F 611 0.00 1146 reject_low 1 ALIGNMENT 299 Y12-19o20.p1k chr12 673 1089 451419 451857 F 417 92.33 1146 reject_low 1 ALIGNMENT 779 Y12-19o20.p1k chr12 35 1089 459893 460994 F 1055 92.99 1146 accept 0 ALIGNMENT 906 Y12-19o21.p1k chr07 1040 30 143323 144322 C 1011 98.22 1080 accept 0 ALIGNMENT 964 Y12-19o21.q1k chr07 34 1142 139165 140262 F 1109 97.39 1153 accept 0 ALIGNMENT 82 Y12-19o22.q1k chr14 665 581 102715 102799 C 85 98.82 1181 reject_low 5 ALIGNMENT 0 Y12-19o22.q1k chr16 579 62 810755 810754 C 518 0.00 1181 reject_low 7 ALIGNMENT 800 Y12-19o22.p1k chr15 20 970 483082 484025 F 951 96.32 1140 accept 0 ALIGNMENT 0 Y12-19o22.q1k chr07 826 666 731142 731141 C 161 0.00 1181 reject_low 8 ALIGNMENT 0 Y12-19o22.q1k chr14 575 62 632690 632689 C 514 0.00 1181 reject_low 3 ALIGNMENT 0 Y12-19o22.q1k chr14 826 665 632602 632601 C 162 0.00 1181 reject_low 3 ALIGNMENT 82 Y12-19o22.q1k chr15 667 583 228326 228410 C 85 98.82 1181 reject_low 2 ALIGNMENT 0 Y12-19o22.q1k chr03 826 665 127714 127713 C 162 0.00 1181 reject_low 6 ALIGNMENT 0 Y12-19o22.q1k chr15 826 668 228327 228326 C 159 0.00 1181 reject_low 2 ALIGNMENT 83 Y12-19o22.q1k chr03 664 582 127713 127795 C 83 100.00 1181 reject_low 6 ALIGNMENT 0 Y12-19o22.q1k chr06 62 588 137479 137478 F 527 0.00 1181 reject_low 9 ALIGNMENT 82 Y12-19o22.q1k chr12 581 665 975969 976053 F 85 98.82 1181 reject_low 4 ALIGNMENT 0 Y12-19o22.q1k chr14 826 666 102716 102715 C 161 0.00 1181 reject_low 5 ALIGNMENT 0 Y12-19o22.q1k chr03 581 62 127796 127795 C 520 0.00 1181 reject_low 6 ALIGNMENT 0 Y12-19o22.q1k chr12 666 826 976053 976052 F 161 0.00 1181 reject_low 4 ALIGNMENT 76 Y12-19o22.q1k chr06 589 664 137479 137554 F 76 100.00 1181 reject_low 9 ALIGNMENT 76 Y12-19o22.q1k chr16 664 580 810672 810754 C 85 97.65 1181 reject_low 7 ALIGNMENT 0 Y12-19o22.q1k chr07 588 62 731218 731217 C 527 0.00 1181 reject_low 8 ALIGNMENT 0 Y12-19o22.q1k chr15 582 62 228411 228410 C 521 0.00 1181 reject_low 2 ALIGNMENT 0 Y12-19o22.q1k chr11 573 62 74720 74719 C 512 0.00 1181 reject_low 1 ALIGNMENT 0 Y12-19o22.q1k chr14 580 62 102800 102799 C 519 0.00 1181 reject_low 5 ALIGNMENT 0 Y12-19o22.q1k chr12 62 580 975969 975968 F 519 0.00 1181 reject_low 4 ALIGNMENT 1014 Y12-19o22.q1k chr15 1180 30 486934 488074 C 1151 97.74 1181 accept 0 ALIGNMENT 76 Y12-19o22.q1k chr14 664 576 632601 632689 C 89 95.51 1181 reject_low 3 ALIGNMENT 0 Y12-19o22.q1k chr11 826 668 74627 74626 C 159 0.00 1181 reject_low 1 ALIGNMENT 81 Y12-19o22.q1k chr11 667 574 74626 74719 C 94 95.74 1181 reject_low 1 ALIGNMENT 77 Y12-19o22.q1k chr07 665 589 731141 731217 C 77 100.00 1181 reject_low 8 ALIGNMENT 0 Y12-19o22.q1k chr06 665 826 137554 137553 F 162 0.00 1181 reject_low 9 ALIGNMENT 0 Y12-19o22.q1k chr16 826 665 810673 810672 C 162 0.00 1181 reject_low 7 ALIGNMENT 809 Y12-19o23.p1k chr06 1031 31 239316 240304 C 1001 95.30 1067 accept 0 ALIGNMENT 958 Y12-19o23.q1k chr06 32 1111 236000 237075 F 1080 97.50 1116 accept 0 ALIGNMENT 393 Y12-19o24.q1k chr07 559 1052 736329 736813 F 494 95.14 1168|2,0 accept 0 ALIGNMENT 0 Y12-19o24.q1k chr16 451 830 560806 560805 F 380 0.00 1168 reject_low 7 ALIGNMENT 0 Y12-19o24.q1k chr07 381 830 817338 817337 F 450 0.00 1168 reject_low 21 ALIGNMENT 0 Y12-19o24.q1k chr05 655 830 138745 138744 F 176 0.00 1168 reject_low 1 ALIGNMENT 0 Y12-19o24.q1k chr08 119 62 116751 116750 C 58 0.00 1168 reject_low 2 ALIGNMENT 0 Y12-19o24.q1k chr14 124 62 102522 102521 C 63 0.00 1168 reject_low 3 ALIGNMENT 167 Y12-19o24.q1k chr03 125 443 151520 151838 F 319 86.21 1168 reject_low 23 ALIGNMENT 0 Y12-19o24.q1k chr07 830 434 817419 817418 C 397 0.00 1168 reject_low 11 ALIGNMENT 0 Y12-19o24.q1k chr04 62 119 802897 802896 F 58 0.00 1168 reject_low 5 ALIGNMENT 169 Y12-19o24.q1k chr15 125 433 600405 600714 F 309 86.73 1168 reject_low 9 ALIGNMENT 0 Y12-19o24.q1k chr15 434 830 600714 600713 F 397 0.00 1168 reject_low 9 ALIGNMENT 166 Y12-19o24.q1k chr02 125 433 259578 259887 F 309 86.41 1168 reject_low 13 ALIGNMENT 0 Y12-19o24.q1k chr10 830 450 354455 354454 C 381 0.00 1168 reject_low 17 ALIGNMENT 0 Y12-19o24.q1k chr10 830 381 354833 354832 C 450 0.00 1168 reject_low 22 ALIGNMENT 131 Y12-19o24.q1k chr10 178 399 204036 204259 F 222 88.29 1168 reject_low 18 ALIGNMENT 0 Y12-19o24.q1k chr08 124 62 543940 543939 C 63 0.00 1168 reject_low 15 ALIGNMENT 29 Y12-19o24.q1k chr07 333 380 817291 817338 F 48 87.50 1168 reject_low 21 ALIGNMENT 165 Y12-19o24.q1k chr08 433 125 543630 543939 C 309 86.41 1168 reject_low 15 ALIGNMENT 0 Y12-19o24.q1k chr10 62 177 204036 204035 F 116 0.00 1168 reject_low 18 ALIGNMENT 0 Y12-19o24.q1k chr13 62 124 184172 184171 F 63 0.00 1168 reject_low 14 ALIGNMENT 0 Y12-19o24.q1k chr08 830 434 543631 543630 C 397 0.00 1168 reject_low 15 ALIGNMENT 24 Y12-19o24.q1k chr03 81 121 151466 151505 F 41 90.24 1168 reject_low 23 ALIGNMENT 164 Y12-19o24.q1k chr04 120 450 802897 803227 F 331 85.20 1168 reject_low 5 ALIGNMENT 0 Y12-19o24.q1k chr07 830 434 823001 823000 C 397 0.00 1168 reject_low 12 ALIGNMENT 0 Y12-19o24.q1k chr07 450 830 535542 535541 F 381 0.00 1168 reject_low 6 ALIGNMENT 0 Y12-19o24.q1k chr07 62 124 401964 401963 F 63 0.00 1168 reject_low 10 ALIGNMENT 29 Y12-19o24.q1k chr10 380 333 354832 354879 C 48 87.50 1168 reject_low 22 ALIGNMENT 0 Y12-19o24.q1k chr15 370 830 594758 594757 F 461 0.00 1168 reject_low 20 ALIGNMENT 0 Y12-19o24.q1k chr04 451 830 803227 803226 F 380 0.00 1168 reject_low 5 ALIGNMENT 0 Y12-19o24.q1k chr07 62 124 535217 535216 F 63 0.00 1168 reject_low 6 ALIGNMENT 0 Y12-19o24.q1k chr04 62 124 1175310 1175309 F 63 0.00 1168 reject_low 16 ALIGNMENT 77 Y12-19o24.q1k chr05 575 654 138666 138745 F 80 98.75 1168 reject_low 1 ALIGNMENT 0 Y12-19o24.q1k chr02 62 124 259578 259577 F 63 0.00 1168 reject_low 13 ALIGNMENT 0 Y12-19o24.q1k chr13 434 830 184481 184480 F 397 0.00 1168 reject_low 14 ALIGNMENT 31 Y12-19o24.q1k chr15 333 369 594722 594758 F 37 94.59 1168 reject_low 20 ALIGNMENT 0 Y12-19o24.q1k chr07 62 332 817291 817290 F 271 0.00 1168 reject_low 21 ALIGNMENT 0 Y12-19o24.q1k chr07 124 62 823310 823309 C 63 0.00 1168 reject_low 12 ALIGNMENT 168 Y12-19o24.q1k chr07 433 125 817418 817727 C 309 86.73 1168 reject_low 11 ALIGNMENT 0 Y12-19o24.q1k chr10 124 62 204034 204033 C 63 0.00 1168 reject_low 19 ALIGNMENT 176 Y12-19o24.q1k chr14 450 125 102195 102521 C 326 86.50 1168 reject_low 3 ALIGNMENT 0 Y12-19o24.q1k chr05 62 120 138219 138218 F 59 0.00 1168 reject_low 1 ALIGNMENT 0 Y12-19o24.q1k chr03 122 124 151506 151519 F 3 0.00 1168 reject_low 23 ALIGNMENT 155 Y12-19o24.q1k chr10 449 147 354454 354759 C 303 85.48 1168 reject_low 17 ALIGNMENT 0 Y12-19o24.q1k chr10 146 62 354760 354759 C 85 0.00 1168 reject_low 17 ALIGNMENT 158 Y12-19o24.q1k chr04 125 450 1175310 1175636 F 326 84.66 1168 reject_low 16 ALIGNMENT 0 Y12-19o24.q1k chr02 62 124 226626 226625 F 63 0.00 1168 reject_low 4 ALIGNMENT 0 Y12-19o24.q1k chr02 451 830 226952 226951 F 380 0.00 1168 reject_low 4 ALIGNMENT 0 Y12-19o24.q1k chr04 451 830 1175636 1175635 F 380 0.00 1168 reject_low 16 ALIGNMENT 0 Y12-19o24.q1k chr03 444 830 151838 151837 F 387 0.00 1168 reject_low 23 ALIGNMENT 177 Y12-19o24.q1k chr08 450 120 116419 116750 C 331 86.40 1168 reject_low 2 ALIGNMENT 867 Y12-19o24.p1k chr07 951 22 739590 740518 C 930 98.28 1105 accept 0 ALIGNMENT 0 Y12-19o24.q1k chr15 62 124 594823 594822 F 63 0.00 1168 reject_low 8 ALIGNMENT 169 Y12-19o24.q1k chr15 125 433 594823 595132 F 309 86.73 1168 reject_low 8 ALIGNMENT 172 Y12-19o24.q1k chr07 125 449 535217 535542 F 325 86.15 1168 reject_low 6 ALIGNMENT 0 Y12-19o24.q1k chr05 451 574 138551 138665 F 124 0.00 1168 reject_low 1 ALIGNMENT 0 Y12-19o24.q1k chr10 332 62 354880 354879 C 271 0.00 1168 reject_low 22 ALIGNMENT 0 Y12-19o24.q1k chr15 434 830 595132 595131 F 397 0.00 1168 reject_low 8 ALIGNMENT 64 Y12-19o24.q1k chr10 280 125 203878 204033 C 156 82.69 1168 reject_low 19 ALIGNMENT 0 Y12-19o24.q1k chr07 124 62 817728 817727 C 63 0.00 1168 reject_low 11 ALIGNMENT 0 Y12-19o24.q1k chr10 400 830 204259 204258 F 431 0.00 1168 reject_low 18 ALIGNMENT 166 Y12-19o24.q1k chr13 125 433 184172 184481 F 309 86.41 1168 reject_low 14 ALIGNMENT 0 Y12-19o24.q1k chr07 561 560 735985 736330 F 0 0.00 1168 accept 0 ALIGNMENT 0 Y12-19o24.q1k chr07 442 830 402281 402280 F 389 0.00 1168 reject_low 10 ALIGNMENT 0 Y12-19o24.q1k chr03 62 80 151466 151465 F 19 0.00 1168 reject_low 23 ALIGNMENT 0 Y12-19o24.q1k chr02 434 830 259887 259886 F 397 0.00 1168 reject_low 13 ALIGNMENT 0 Y12-19o24.q1k chr14 830 451 102196 102195 C 380 0.00 1168 reject_low 3 ALIGNMENT 0 Y12-19o24.q1k chr10 830 281 203879 203878 C 550 0.00 1168 reject_low 19 ALIGNMENT 168 Y12-19o24.q1k chr07 433 125 823000 823309 C 309 86.73 1168 reject_low 12 ALIGNMENT 170 Y12-19o24.q1k chr16 125 450 560480 560806 F 326 85.89 1168 reject_low 7 ALIGNMENT 167 Y12-19o24.q1k chr07 125 441 401964 402281 F 317 86.12 1168 reject_low 10 ALIGNMENT 0 Y12-19o24.q1k chr15 62 332 594722 594721 F 271 0.00 1168 reject_low 20 ALIGNMENT 0 Y12-19o24.q1k chr08 830 451 116420 116419 C 380 0.00 1168 reject_low 2 ALIGNMENT 0 Y12-19o24.q1k chr16 62 124 560480 560479 F 63 0.00 1168 reject_low 7 ALIGNMENT 173 Y12-19o24.q1k chr02 125 450 226626 226952 F 326 86.20 1168 reject_low 4 ALIGNMENT 458 Y12-19o24.q1k chr07 27 562 735450 735986 F 536 96.83 1168|0,2 accept 0 ALIGNMENT 147 Y12-19o24.q1k chr05 121 450 138219 138550 F 330 83.33 1168 reject_low 1 ALIGNMENT 0 Y12-19o24.q1k chr15 62 124 600405 600404 F 63 0.00 1168 reject_low 9 ALIGNMENT 510 Y12-19p02.q1k chr13 57 902 615399 616230 F 846 88.53 1267 accept 0 ALIGNMENT 750 Y12-19p03.q1k chr03 913 30 33885 34754 C 884 97.29 1300 accept 0 ALIGNMENT 719 Y12-19p03.p1k chr03 19 947 30891 31804 F 929 94.51 1206 accept 0 ALIGNMENT 1027 Y12-19p04.q1k chr02 1191 32 248366 249520 C 1160 97.50 1212 accept 0 ALIGNMENT 986 Y12-19p04.p1k chr02 28 1113 243502 244580 F 1086 98.16 1132 accept 0 ALIGNMENT 924 Y12-19p05.q1k chr12 1077 30 463559 464597 C 1048 96.95 1246 accept 0 ALIGNMENT 924 Y12-19p05.q1k chr12 1077 30 454422 455460 C 1048 96.95 1246 reject_low 1 ALIGNMENT 0 Y12-19p05.p1k chr12 62 515 489754 489753 F 454 0.00 1207 reject_low 2 ALIGNMENT 0 Y12-19p05.p1k chr12 62 167 451419 451418 F 106 0.00 1207 reject_low 1 ALIGNMENT 645 Y12-19p05.p1k chr12 168 1038 451419 452292 F 871 93.34 1207 reject_low 1 ALIGNMENT 763 Y12-19p05.p1k chr12 16 1038 460403 461429 F 1023 93.65 1207 accept 0 ALIGNMENT 356 Y12-19p05.p1k chr12 516 1038 489754 490260 F 523 91.97 1207 reject_low 2 ALIGNMENT 424 Y12-19p06.p1k chr12 148 816 463126 463787 F 669 88.94 1317 reject_low 1 ALIGNMENT 426 Y12-19p06.p1k chr12 148 877 453989 454709 F 730 87.40 1317 accept 0 ALIGNMENT 267 Y12-19p10.p1k chr12 777 145 523004 523635 C 633 81.20 1355 accept 0 ALIGNMENT 299 Y12-19p11.q1k chr13 42 546 253715 254218 F 505 87.33 1335 accept 0 ALIGNMENT 184 Y12-19p12.p1k chr12 673 178 523066 523561 C 496 76.61 1284 accept 0 ALIGNMENT 0 Y12-19p13.q1k chr15 931 915 1086070 1086118 C 17 0.00 1289 ambiguous_tel 4 ALIGNMENT 794 Y12-19p13.q1k chr09 32 914 4615 5497 F 883 97.17 1289 ambiguous_tel 0 ALIGNMENT 31 Y12-19p13.q1k chr07 1014 932 1085733 1085810 C 83 83.13 1289 reject_low 6 ALIGNMENT 53 Y12-19p13.q1k chr02 107 163 4154 4210 F 57 98.25 1289 reject_low 17 ALIGNMENT 0 Y12-19p13.q1k chr02 62 106 4154 4153 F 45 0.00 1289 reject_low 17 ALIGNMENT 43 Y12-19p13.q1k chr10 932 1014 5530 5607 F 83 87.95 1289 ambiguous_tel 1 ALIGNMENT 750 Y12-19p13.q1k chr07 914 32 1085860 1086741 C 883 95.47 1289 reject_low 6 ALIGNMENT 0 Y12-19p13.q1k chr08 915 932 3891 3940 F 18 0.00 1289 reject_low 12 ALIGNMENT 0 Y12-19p13.q1k chr12 62 106 3953 3952 F 45 0.00 1289 reject_low 13,14 ALIGNMENT 0 Y12-19p13.q1k chr10 915 931 5481 5529 F 17 0.00 1289 ambiguous_tel 1 ALIGNMENT 90 Y12-19p13.q1k chr13 766 914 3887 4034 F 149 88.59 1289 reject_low 15 ALIGNMENT 0 Y12-19p13.q1k chr12 164 932 9545 9743 F 769 0.00 1289 reject_low 11 ALIGNMENT 0 Y12-19p13.q1k chr05 331 386 4590 4585 F 56 0.00 1289 reject_low 9 ALIGNMENT 31 Y12-19p13.q1k chr16 932 1014 5067 5144 F 83 83.13 1289 reject_low 8 ALIGNMENT 0 Y12-19p13.q1k chr12 164 765 4010 9545 F 602 0.00 1289 reject_low 14 ALIGNMENT 0 Y12-19p13.q1k chr07 931 915 1085811 1085859 C 17 0.00 1289 reject_low 6 ALIGNMENT 90 Y12-19p13.q1k chr12 766 914 9546 9693 F 149 88.59 1289 reject_low 14 ALIGNMENT 244 Y12-19p13.q1k chr05 32 280 4310 4558 F 249 99.60 1289 reject_low 9 ALIGNMENT 0 Y12-19p13.q1k chr08 931 915 558423 558471 C 17 0.00 1289 reject_low 19 ALIGNMENT 0 Y12-19p13.q1k chr05 931 915 571734 571782 C 17 0.00 1289 reject_low 5 ALIGNMENT 53 Y12-19p13.q1k chr12 107 163 3953 4009 F 57 98.25 1289 reject_low 13,14 ALIGNMENT 0 Y12-19p13.q1k chr12 62 106 9488 9487 F 45 0.00 1289 reject_low 11 ALIGNMENT 53 Y12-19p13.q1k chr12 107 163 9488 9544 F 57 98.25 1289 reject_low 11 ALIGNMENT 31 Y12-19p13.q1k chr08 995 932 558362 558422 C 64 85.94 1289 reject_low 19 ALIGNMENT 39 Y12-19p13.q1k chr06 933 1014 3246 3322 F 82 86.59 1289 reject_low 16 ALIGNMENT 90 Y12-19p13.q1k chr08 914 766 558472 558619 C 149 88.59 1289 reject_low 19 ALIGNMENT 0 Y12-19p13.q1k chr13 915 932 4035 4084 F 18 0.00 1289 reject_low 15 ALIGNMENT 40 Y12-19p13.q1k chr12 1014 932 1073028 1073105 C 83 86.75 1289 ambiguous_tel 3 ALIGNMENT 36 Y12-19p13.q1k chr12 933 1014 4209 4285 F 82 85.37 1289 reject_low 13 ALIGNMENT 53 Y12-19p13.q1k chr13 107 163 3829 3885 F 57 98.25 1289 reject_low 15 ALIGNMENT 750 Y12-19p13.q1k chr05 914 32 571783 572664 C 883 95.47 1289 reject_low 5 ALIGNMENT 88 Y12-19p13.q1k chr06 768 914 3050 3195 F 147 88.44 1289 reject_low 16 ALIGNMENT 0 Y12-19p13.q1k chr06 164 767 3047 3049 F 604 0.00 1289 reject_low 16 ALIGNMENT 0 Y12-19p13.q1k chr12 386 331 1067098 1067093 C 56 0.00 1289 reject_low 10 ALIGNMENT 53 Y12-19p13.q1k chr08 107 163 3685 3741 F 57 98.25 1289 reject_low 12 ALIGNMENT 762 Y12-19p13.q1k chr12 914 32 1073155 1074036 C 883 95.92 1289 ambiguous_tel 3 ALIGNMENT 0 Y12-19p13.q1k chr06 62 106 2990 2989 F 45 0.00 1289 reject_low 16 ALIGNMENT 762 Y12-19p13.q1k chr04 914 32 1526954 1527835 C 883 95.92 1289 ambiguous_tel 2 ALIGNMENT 29 Y12-19p13.q1k chr05 296 330 4555 4589 F 35 94.29 1289 reject_low 9 ALIGNMENT 241 Y12-19p13.q1k chr12 280 32 1067125 1067373 C 249 99.20 1289 reject_low 10 ALIGNMENT 38 Y12-19p13.q1k chr05 1007 932 571662 571733 C 76 86.84 1289 reject_low 5 ALIGNMENT 53 Y12-19p13.q1k chr08 163 107 558621 558677 C 57 98.25 1289 reject_low 19 ALIGNMENT 762 Y12-19p13.q1k chr15 914 32 1086119 1087000 C 883 95.92 1289 ambiguous_tel 4 ALIGNMENT 0 Y12-19p13.q1k chr13 164 765 3886 3886 F 602 0.00 1289 reject_low 15 ALIGNMENT 0 Y12-19p13.q1k chr08 765 164 558620 558620 C 602 0.00 1289 reject_low 19 ALIGNMENT 36 Y12-19p13.q1k chr13 933 1014 4085 4161 F 82 85.37 1289 reject_low 15 ALIGNMENT 34 Y12-19p13.q1k chr02 932 1014 4409 4486 F 83 84.34 1289 reject_low 17 ALIGNMENT 0 Y12-19p13.q1k chr16 765 164 944167 944167 C 602 0.00 1289 reject_low 18 ALIGNMENT 40 Y12-19p13.q1k chr04 1014 932 1526827 1526904 C 83 86.75 1289 ambiguous_tel 2 ALIGNMENT 0 Y12-19p13.q1k chr16 932 915 943969 944018 C 18 0.00 1289 reject_low 18 ALIGNMENT 0 Y12-19p13.q1k chr06 915 932 3196 3245 F 18 0.00 1289 reject_low 16 ALIGNMENT 40 Y12-19p13.q1k chr15 1014 932 1085992 1086069 C 83 86.75 1289 ambiguous_tel 4 ALIGNMENT 31 Y12-19p13.q1k chr14 932 1014 5158 5235 F 83 83.13 1289 reject_low 7 ALIGNMENT 0 Y12-19p13.q1k chr02 915 931 4360 4408 F 17 0.00 1289 reject_low 17 ALIGNMENT 0 Y12-19p13.q1k chr16 106 62 944225 944224 C 45 0.00 1289 reject_low 18 ALIGNMENT 0 Y12-19p13.q1k chr13 62 106 3829 3828 F 45 0.00 1289 reject_low 15 ALIGNMENT 53 Y12-19p13.q1k chr06 107 163 2990 3046 F 57 98.25 1289 reject_low 16 ALIGNMENT 90 Y12-19p13.q1k chr08 766 914 3743 3890 F 149 88.59 1289 reject_low 12 ALIGNMENT 29 Y12-19p13.q1k chr12 330 296 1067094 1067128 C 35 94.29 1289 reject_low 10 ALIGNMENT 491 Y12-19p13.q1k chr05 387 1014 4586 5207 F 628 93.79 1289 reject_low 9 ALIGNMENT 0 Y12-19p13.q1k chr08 106 62 558678 558677 C 45 0.00 1289 reject_low 19 ALIGNMENT 90 Y12-19p13.q1k chr02 766 914 4212 4359 F 149 88.59 1289 reject_low 17 ALIGNMENT 0 Y12-19p13.q1k chr12 164 765 4010 4010 F 602 0.00 1289 reject_low 13 ALIGNMENT 35 Y12-19p13.q1k chr16 1002 933 943903 943968 C 70 87.14 1289 reject_low 18 ALIGNMENT 0 Y12-19p13.q1k chr12 915 932 9694 9743 F 18 0.00 1289 reject_low 14 ALIGNMENT 0 Y12-19p13.q1k chr12 295 281 1067129 1067124 C 15 0.00 1289 reject_low 10 ALIGNMENT 0 Y12-19p13.q1k chr16 915 931 5018 5066 F 17 0.00 1289 reject_low 8 ALIGNMENT 0 Y12-19p13.q1k chr14 915 931 5109 5157 F 17 0.00 1289 reject_low 7 ALIGNMENT 0 Y12-19p13.q1k chr04 931 915 1526905 1526953 C 17 0.00 1289 ambiguous_tel 2 ALIGNMENT 0 Y12-19p13.q1k chr09 915 931 5498 5546 F 17 0.00 1289 ambiguous_tel 0 ALIGNMENT 0 Y12-19p13.q1k chr08 164 765 3742 3742 F 602 0.00 1289 reject_low 12 ALIGNMENT 90 Y12-19p13.q1k chr12 766 914 4011 4158 F 149 88.59 1289 reject_low 13 ALIGNMENT 43 Y12-19p13.q1k chr09 932 1014 5547 5624 F 83 87.95 1289 ambiguous_tel 0 ALIGNMENT 0 Y12-19p13.q1k chr02 164 765 4211 4211 F 602 0.00 1289 reject_low 17 ALIGNMENT 0 Y12-19p13.q1k chr08 62 106 3685 3684 F 45 0.00 1289 reject_low 12 ALIGNMENT 750 Y12-19p13.q1k chr14 32 914 4227 5108 F 883 95.47 1289 reject_low 7 ALIGNMENT 90 Y12-19p13.q1k chr16 914 766 944019 944166 C 149 88.59 1289 reject_low 18 ALIGNMENT 39 Y12-19p13.q1k chr08 933 1014 3941 4017 F 82 86.59 1289 reject_low 12 ALIGNMENT 491 Y12-19p13.q1k chr12 1014 387 1066476 1067097 C 628 93.79 1289 reject_low 10 ALIGNMENT 53 Y12-19p13.q1k chr16 163 107 944168 944224 C 57 98.25 1289 reject_low 18 ALIGNMENT 0 Y12-19p13.q1k chr12 931 915 1073106 1073154 C 17 0.00 1289 ambiguous_tel 3 ALIGNMENT 750 Y12-19p13.q1k chr16 32 914 4136 5017 F 883 95.47 1289 reject_low 8 ALIGNMENT 36 Y12-19p13.q1k chr12 933 1014 9744 9820 F 82 85.37 1289 reject_low 11,14 ALIGNMENT 794 Y12-19p13.q1k chr10 32 914 4598 5480 F 883 97.17 1289 ambiguous_tel 1 ALIGNMENT 0 Y12-19p13.q1k chr05 281 295 4559 4554 F 15 0.00 1289 reject_low 9 ALIGNMENT 0 Y12-19p13.q1k chr12 915 932 4159 4208 F 18 0.00 1289 reject_low 13 ALIGNMENT 269 Y12-19p15.p1k chr07 833 62 323903 324688 C 772 80.44 1359 accept 0 ALIGNMENT 194 Y12-19p19.q1k chr10 453 29 668444 668859 C 425 83.53 1266 accept 0 ALIGNMENT 625 Y12-19p19.p1k chr10 4 898 665511 666404 F 895 90.50 1155 accept 0 ALIGNMENT 388 Y12-19p21.q1k chr12 61 724 712954 713623 F 664 87.20 1374 accept 0 ALIGNMENT 521 Y12-19p22.q1k chr12 1 801 877898 878686 F 801 90.01 1211 accept 0 ALIGNMENT 808 Y12-19p23.q1k chr10 946 27 668577 669491 C 920 97.39 1193 accept 0 ALIGNMENT 823 Y12-19p24.q1k chr13 30 1033 813375 814372 F 1004 95.32 1160 accept 0 ALIGNMENT 782 Y12-19p24.p1k chr13 968 30 816751 817683 C 939 95.53 1092 accept 0 ALIGNMENT 925 Y12-1a03.q1k chr04 1193 38 321172 322303 C 1156 95.24 1401 accept 0 ALIGNMENT 0 Y12-1a03.q1k chr12 119 841 931756 931755 F 723 0.00 1401 reject_low 1 ALIGNMENT 980 Y12-1a03.p1k chr04 18 1260 319083 320325 F 1243 94.53 1344 accept 0 ALIGNMENT 59 Y12-1a03.q1k chr12 53 118 931691 931756 F 66 96.97 1401 reject_low 1 ALIGNMENT 486 Y12-1a04.p1k chr12 34 841 462359 463155 F 808 87.87 1380 reject_low 1 ALIGNMENT 506 Y12-1a04.p1k chr12 34 1020 453222 454193 F 987 85.01 1380 accept 0 ALIGNMENT 902 Y12-1a05.q1k chr15 1096 34 888220 889285 C 1063 96.05 1362 accept 0 ALIGNMENT 982 Y12-1a05.p1k chr15 25 1156 883397 884529 F 1132 96.55 1368 accept 0 ALIGNMENT 894 Y12-1a06.q1k chr06 39 1128 193995 195100 F 1090 95.05 1312 accept 0 ALIGNMENT 1074 Y12-1a06.p1k chr06 1223 24 197786 198997 C 1200 97.17 1337 accept 0 ALIGNMENT 1034 Y12-1a08.p1k chr07 20 1224 750695 751914 F 1205 96.18 1328 accept 0 ALIGNMENT 928 Y12-1a08.q1k chr07 1160 30 754014 755139 C 1131 95.23 1256 accept 0 ALIGNMENT 966 Y12-1a09.p1k chr15 16 1171 464747 465918 F 1156 95.93 1362 accept 0 ALIGNMENT 342 Y12-1a10.q1k chr08 423 53 85535 85905 C 371 98.92 1357 reject_low 9 ALIGNMENT 0 Y12-1a10.q1k chr14 872 424 561609 561608 C 449 0.00 1357 reject_low 3 ALIGNMENT 0 Y12-1a10.q1k chr16 424 872 443109 443108 F 449 0.00 1357 reject_low 10 ALIGNMENT 992 Y12-1a10.q1k chr08 1252 49 90555 91761 C 1204 95.76 1357 reject_low 1 ALIGNMENT 0 Y12-1a10.q1k chr14 264 62 96610 96609 C 203 0.00 1357 reject_low 17 ALIGNMENT 0 Y12-1a10.q1k chr04 872 425 437146 437145 C 448 0.00 1357 reject_low 15 ALIGNMENT 0 Y12-1a10.q1k chr10 872 426 197463 197462 C 447 0.00 1357 reject_low 4 ALIGNMENT 0 Y12-1a10.q1k chr05 424 872 354726 354725 F 449 0.00 1357 reject_low 13 ALIGNMENT 308 Y12-1a10.q1k chr04 424 53 437145 437515 C 372 95.97 1357 reject_low 15 ALIGNMENT 327 Y12-1a10.q1k chr05 53 423 354356 354726 F 371 97.57 1357 reject_low 13 ALIGNMENT 981 Y12-1a10.p1k chr10 25 1216 199210 200414 F 1192 96.48 1363 accept_trans 0 ALIGNMENT 351 Y12-1a10.q1k chr09 53 423 196650 197020 F 371 99.73 1357 reject_low 6 ALIGNMENT 0 Y12-1a10.q1k chr14 424 872 632491 632490 F 449 0.00 1357 reject_low 12 ALIGNMENT 0 Y12-1a10.q1k chr07 872 425 110859 110858 C 448 0.00 1357 reject_low 8 ALIGNMENT 353 Y12-1a10.q1k chr10 425 53 197462 197834 C 373 99.73 1357 reject_low 4 ALIGNMENT 54 Y12-1a10.q1k chr15 137 53 710025 710108 C 85 92.94 1357|2,0 reject_low 19 ALIGNMENT 0 Y12-1a10.q1k chr06 872 248 144326 144325 C 625 0.00 1357 reject_low 18 ALIGNMENT 0 Y12-1a10.q1k chr02 424 872 36218 36217 F 449 0.00 1357 reject_low 5 ALIGNMENT 0 Y12-1a10.q1k chr02 425 872 643854 643853 F 448 0.00 1357 reject_low 11 ALIGNMENT 989 Y12-1a10.q1k chr16 53 1252 436887 438089 F 1200 95.75 1357 reject_low 2 ALIGNMENT 334 Y12-1a10.q1k chr02 53 424 643483 643854 F 372 98.12 1357 reject_low 11 ALIGNMENT 304 Y12-1a10.q1k chr07 53 423 931174 931543 F 371 95.69 1357 reject_low 16 ALIGNMENT 0 Y12-1a10.q1k chr15 872 424 703774 703773 C 449 0.00 1357 reject_low 19 ALIGNMENT 0 Y12-1a10.q1k chr07 424 872 931543 931542 F 449 0.00 1357 reject_low 16 ALIGNMENT 0 Y12-1a10.q1k chr15 135 136 704061 710026 C 0 0.00 1357 reject_low 19 ALIGNMENT 323 Y12-1a10.q1k chr13 53 424 808536 808906 F 372 97.31 1357 reject_low 14 ALIGNMENT 0 Y12-1a10.q1k chr14 872 425 96451 96450 C 448 0.00 1357 reject_low 17 ALIGNMENT 340 Y12-1a10.q1k chr14 423 49 561608 561982 C 375 98.40 1357 reject_low 3 ALIGNMENT 0 Y12-1a10.q1k chr08 872 424 85536 85535 C 449 0.00 1357 reject_low 9 ALIGNMENT 1006 Y12-1a10.q1k chr10 1252 53 202487 203689 C 1200 96.25 1357 accept_trans 0 ALIGNMENT 351 Y12-1a10.q1k chr13 423 53 503770 504140 C 371 99.73 1357 reject_low 7 ALIGNMENT 339 Y12-1a10.q1k chr07 424 51 110858 111231 C 374 98.40 1357 reject_low 8 ALIGNMENT 339 Y12-1a10.q1k chr16 53 423 442739 443109 F 371 98.65 1357 reject_low 10 ALIGNMENT 0 Y12-1a10.q1k chr13 425 872 808906 808905 F 448 0.00 1357 reject_low 14 ALIGNMENT 0 Y12-1a10.q1k chr09 424 872 197020 197019 F 449 0.00 1357 reject_low 6 ALIGNMENT 0 Y12-1a10.q1k chr13 872 424 503771 503770 C 449 0.00 1357 reject_low 7 ALIGNMENT 956 Y12-1a10.p1k chr08 25 1191 87278 88453 F 1167 96.32 1363 reject_low 1 ALIGNMENT 330 Y12-1a10.q1k chr14 53 423 632121 632491 F 371 97.84 1357 reject_low 12 ALIGNMENT 146 Y12-1a10.q1k chr14 424 265 96450 96609 C 160 98.12 1357 reject_low 17 ALIGNMENT 351 Y12-1a10.q1k chr02 53 423 35848 36218 F 371 99.73 1357 reject_low 5 ALIGNMENT 956 Y12-1a10.p1k chr16 1191 25 440192 441367 C 1167 96.40 1363 reject_low 2 ALIGNMENT 42 Y12-1a10.q1k chr06 247 54 144325 144518 C 194 77.32 1357 reject_low 18 ALIGNMENT 265 Y12-1a10.q1k chr15 423 133 703773 704063 C 291 98.28 1357|0,3 reject_low 19 ALIGNMENT 1015 Y12-1a11.p1k chr16 1303 24 889660 890959 C 1280 94.38 1347 accept 0 ALIGNMENT 919 Y12-1a11.q1k chr16 36 1085 886585 887650 F 1050 96.76 1263 accept 0 ALIGNMENT 1035 Y12-1a12.p1k chr10 19 1204 502741 503937 F 1186 96.63 1331 accept 0 ALIGNMENT 25 Y12-1a13.q1k chr09 851 824 376611 376638 C 28 100.00 1302 reject_low 7 ALIGNMENT 0 Y12-1a13.q1k chr14 868 62 347247 347246 C 807 0.00 1302 reject_low 9 ALIGNMENT 0 Y12-1a13.q1k chr15 829 62 768705 768704 C 768 0.00 1302 reject_low 5 ALIGNMENT 39 Y12-1a13.q1k chr07 893 833 70164 70224 C 61 90.16 1302 reject_low 3 ALIGNMENT 23 Y12-1a13.q1k chr12 881 858 281379 281402 C 24 100.00 1302 reject_low 10 ALIGNMENT 0 Y12-1a13.q1k chr15 891 870 768666 768665 C 22 0.00 1302 reject_low 5 ALIGNMENT 23 Y12-1a13.q1k chr07 851 821 530667 530697 C 31 93.55 1302 reject_low 8 ALIGNMENT 0 Y12-1a13.q1k chr09 823 62 376639 376638 C 762 0.00 1302 reject_low 7 ALIGNMENT 0 Y12-1a13.q1k chr07 820 62 530698 530697 C 759 0.00 1302 reject_low 8 ALIGNMENT 0 Y12-1a13.q1k chr12 850 891 585078 585077 F 42 0.00 1302 reject_low 6 ALIGNMENT 957 Y12-1a13.q1k chr11 35 1153 575343 576455 F 1119 96.78 1302 accept_chi 1 ALIGNMENT 0 Y12-1a13.q1k chr07 832 62 70225 70224 C 771 0.00 1302 reject_low 3 ALIGNMENT 21 Y12-1a13.q1k chr14 893 869 347222 347246 C 25 96.00 1302 reject_low 9 ALIGNMENT 29 Y12-1a13.q1k chr07 893 854 394461 394500 C 40 92.50 1302 reject_low 4 ALIGNMENT 31 Y12-1a13.q1k chr15 869 830 768665 768704 C 40 97.50 1302 reject_low 5 ALIGNMENT 0 Y12-1a13.q1k chr09 891 852 376612 376611 C 40 0.00 1302 reject_low 7 ALIGNMENT 948 Y12-1a13.p1k chr12 17 1183 354012 355191 F 1167 95.46 1349 accept_chi 0 ALIGNMENT 23 Y12-1a13.q1k chr12 819 849 585048 585078 F 31 93.55 1302 reject_low 6 ALIGNMENT 0 Y12-1a13.q1k chr07 891 852 530668 530667 C 40 0.00 1302 reject_low 8 ALIGNMENT 58 Y12-1a13.q1k chr15 812 915 427949 428052 F 104 88.46 1302 reject_low 2 ALIGNMENT 0 Y12-1a13.q1k chr07 853 62 394501 394500 C 792 0.00 1302 reject_low 4 ALIGNMENT 0 Y12-1a13.q1k chr12 62 818 585048 585047 F 757 0.00 1302 reject_low 6 ALIGNMENT 0 Y12-1a13.q1k chr15 62 811 427949 427948 F 750 0.00 1302 reject_low 2 ALIGNMENT 0 Y12-1a13.q1k chr12 857 62 281403 281402 C 796 0.00 1302 reject_low 10 ALIGNMENT 1021 Y12-1a14.p1k chr09 1180 20 366617 367787 C 1161 97.59 1348 accept 0 ALIGNMENT 1008 Y12-1a15.q1k chr02 1194 37 630105 631248 C 1158 97.06 1334 accept 0 ALIGNMENT 0 Y12-1a15.p1k chr07 858 601 118861 118860 C 258 0.00 1396 reject_low 1 ALIGNMENT 0 Y12-1a15.p1k chr07 423 62 119037 119036 C 362 0.00 1396 reject_low 1 ALIGNMENT 46 Y12-1a15.p1k chr07 600 424 118860 119036 C 177 75.71 1396 reject_low 1 ALIGNMENT 0 Y12-1a15.p1k chr05 62 338 88229 88228 F 277 0.00 1396 reject_low 2 ALIGNMENT 1019 Y12-1a15.p1k chr02 21 1261 626893 628138 F 1241 95.00 1396 accept 0 ALIGNMENT 25 Y12-1a15.p1k chr05 339 527 88229 88417 F 189 71.43 1396 reject_low 2 ALIGNMENT 0 Y12-1a15.p1k chr05 528 858 88417 88416 F 331 0.00 1396 reject_low 2 ALIGNMENT 421 Y12-1a16.q1k chr07 28 547 1002782 1003296 F 520 94.81 1268 accept_chi 1 ALIGNMENT 997 Y12-1a16.p1k chr14 1206 23 389447 390656 C 1184 96.37 1335 accept_chi 0 ALIGNMENT 987 Y12-1a17.q1k chr10 38 1258 682436 683671 F 1221 94.76 1280 accept 0 ALIGNMENT 1027 Y12-1a17.p1k chr10 1266 22 685350 686610 C 1245 95.98 1330 accept 0 ALIGNMENT 945 Y12-1a18.p1k chr07 1167 19 192609 193767 C 1149 95.82 1320 accept 0 ALIGNMENT 990 Y12-1a18.q1k chr07 33 1193 189137 190314 F 1161 95.95 1304 accept 0 ALIGNMENT 368 Y12-1a19.p1k chr14 92 749 345360 346016 F 658 86.47 1511 accept 0 ALIGNMENT 959 Y12-1a20.p1k chr07 20 1191 231092 232251 F 1172 96.25 1361 accept 0 ALIGNMENT 1055 Y12-1a20.q1k chr07 1283 36 233836 235100 C 1248 95.99 1325 accept 0 ALIGNMENT 993 Y12-1a21.p1k chr02 18 1246 476148 477380 F 1229 94.79 1267 accept 0 ALIGNMENT 1007 Y12-1a21.q1k chr02 1229 37 480731 481945 C 1193 96.14 1232 accept 0 ALIGNMENT 371 Y12-1b01.p1k chr12 840 37 640357 641144 C 804 83.83 1357 accept 0 ALIGNMENT 1048 Y12-1b02.q1k chr13 38 1309 459077 460352 F 1272 95.20 1314 accept 0 ALIGNMENT 994 Y12-1b03.q1k chr16 37 1241 37782 39000 F 1205 95.68 1329 accept 0 ALIGNMENT 964 Y12-1b03.p1k chr16 1170 18 40926 42084 C 1153 95.32 1335 accept 0 ALIGNMENT 1017 Y12-1b04.q1k chr12 1166 36 466571 467715 C 1131 97.52 1295 accept 1 ALIGNMENT 915 Y12-1b04.p1k chr12 20 1072 453196 454264 F 1053 96.39 1322 accept 0 ALIGNMENT 1017 Y12-1b04.q1k chr12 1166 36 457434 458578 C 1131 97.52 1295 accept 0 ALIGNMENT 915 Y12-1b04.p1k chr12 20 1072 462333 463401 F 1053 96.39 1322 accept 1 ALIGNMENT 1031 Y12-1b05.q1k chr11 1254 32 150784 152022 C 1223 96.24 1336 accept 0 ALIGNMENT 993 Y12-1b05.p1k chr11 22 1189 148436 149622 F 1168 96.23 1324 accept 0 ALIGNMENT 916 Y12-1b07.q1k chr07 24 1141 618795 619916 F 1118 94.90 1271 accept 0 ALIGNMENT 1011 Y12-1b07.p1k chr07 1262 30 622512 623760 C 1233 95.21 1329 accept 0 ALIGNMENT 829 Y12-1b08.p1k chr15 25 1157 127917 129041 F 1133 92.76 1411 accept 0 ALIGNMENT 978 Y12-1b10.p1k chr14 1169 19 574468 575629 C 1151 96.26 1394 accept 0 ALIGNMENT 988 Y12-1b10.q1k chr14 38 1364 572461 573793 F 1327 92.54 1366 accept 0 ALIGNMENT 914 Y12-1b10.q1k chr14 1364 38 598438 599793 C 1327 90.66 1366 reject_low 1 ALIGNMENT 0 Y12-1b11.q1k chr13 62 191 289020 289019 F 130 0.00 1319 reject_low 6 ALIGNMENT 170 Y12-1b11.q1k chr08 860 210 294750 295400 C 651 77.27 1319 reject_low 5 ALIGNMENT 0 Y12-1b11.q1k chr13 731 751 289558 289557 F 21 0.00 1319 reject_low 6 ALIGNMENT 0 Y12-1b11.q1k chr08 209 62 291642 291641 C 148 0.00 1319 reject_low 4 ALIGNMENT 105 Y12-1b11.q1k chr13 192 730 289020 289558 F 539 74.58 1319 reject_low 6 ALIGNMENT 0 Y12-1b11.q1k chr08 209 62 295401 295400 C 148 0.00 1319 reject_low 5 ALIGNMENT 0 Y12-1b11.q1k chr10 62 209 27880 27879 F 148 0.00 1319 reject_low 7 ALIGNMENT 824 Y12-1b11.q1k chr04 1163 29 1153967 1155115 C 1135 92.25 1319 accept 0 ALIGNMENT 0 Y12-1b11.q1k chr04 209 62 1163675 1163674 C 148 0.00 1319 reject_low 3 ALIGNMENT 713 Y12-1b11.p1k chr04 81 1023 1149743 1150692 F 943 91.83 1321 accept 0 ALIGNMENT 276 Y12-1b11.q1k chr08 908 210 290943 291641 C 699 80.97 1319 reject_low 4 ALIGNMENT 779 Y12-1b11.q1k chr04 1015 29 1159520 1160507 C 987 93.92 1319 reject_low 1 ALIGNMENT 102 Y12-1b11.q1k chr10 210 859 27880 28529 F 650 73.38 1319 reject_low 7 ALIGNMENT 410 Y12-1b11.q1k chr08 880 31 287140 287989 C 850 83.76 1319 reject_low 2 ALIGNMENT 319 Y12-1b11.q1k chr04 938 210 1162946 1163674 C 729 82.44 1319 reject_low 3 ALIGNMENT 814 Y12-1b12.p1k chr11 997 22 425996 427003 C 976 96.00 1313 accept 0 ALIGNMENT 1023 Y12-1b12.q1k chr11 33 1253 422514 423749 F 1221 96.31 1315 accept 0 ALIGNMENT 21 Y12-1b14.p1k chr15 968 992 354149 354173 F 25 96.00 1368 reject_low 8 ALIGNMENT 0 Y12-1b14.p1k chr15 62 967 354149 354148 F 906 0.00 1368 reject_low 8 ALIGNMENT 0 Y12-1b14.p1k chr10 858 62 422925 422924 C 797 0.00 1368 reject_low 3 ALIGNMENT 25 Y12-1b14.p1k chr12 953 992 793558 793597 F 40 87.50 1368 reject_low 5 ALIGNMENT 0 Y12-1b14.p1k chr02 62 952 197723 197722 F 891 0.00 1368 reject_low 7 ALIGNMENT 34 Y12-1b14.p1k chr15 1029 1163 354204 354344 F 135 77.78 1368 reject_low 8 ALIGNMENT 0 Y12-1b14.p1k chr10 62 853 390954 390953 F 792 0.00 1368 reject_low 1 ALIGNMENT 75 Y12-1b14.p1k chr10 854 931 390954 391031 F 78 98.72 1368 reject_low 1 ALIGNMENT 73 Y12-1b14.p1k chr15 931 859 976416 976488 C 73 100.00 1368 reject_low 4 ALIGNMENT 1013 Y12-1b14.q1k chr04 36 1188 1170321 1171482 F 1153 96.62 1313 accept 0 ALIGNMENT 0 Y12-1b14.p1k chr12 62 952 793558 793557 F 891 0.00 1368 reject_low 5 ALIGNMENT 0 Y12-1b14.p1k chr07 62 952 845292 845291 F 891 0.00 1368 reject_low 6 ALIGNMENT 25 Y12-1b14.p1k chr07 953 992 845292 845331 F 40 87.50 1368 reject_low 6 ALIGNMENT 36 Y12-1b14.p1k chr02 1046 1163 197809 197932 F 118 79.66 1368 reject_low 7 ALIGNMENT 0 Y12-1b14.p1k chr13 62 858 572882 572881 F 797 0.00 1368 reject_low 2 ALIGNMENT 0 Y12-1b14.p1k chr15 993 1028 354174 354203 F 36 0.00 1368 reject_low 8 ALIGNMENT 74 Y12-1b14.p1k chr13 859 932 572882 572955 F 74 100.00 1368 reject_low 2 ALIGNMENT 0 Y12-1b14.p1k chr02 993 1045 197763 197808 F 53 0.00 1368 reject_low 7 ALIGNMENT 0 Y12-1b14.p1k chr07 993 1028 845332 845369 F 36 0.00 1368 reject_low 6 ALIGNMENT 0 Y12-1b14.p1k chr12 993 1026 793598 793633 F 34 0.00 1368 reject_low 5 ALIGNMENT 0 Y12-1b14.p1k chr15 858 62 976489 976488 C 797 0.00 1368 reject_low 4 ALIGNMENT 41 Y12-1b14.p1k chr07 1029 1163 845370 845511 F 135 80.00 1368 reject_low 6 ALIGNMENT 73 Y12-1b14.p1k chr10 931 859 422852 422924 C 73 100.00 1368 reject_low 3 ALIGNMENT 923 Y12-1b14.p1k chr04 1113 22 1175642 1176731 C 1092 96.15 1368 accept 0 ALIGNMENT 42 Y12-1b14.p1k chr12 1027 1155 793634 793768 F 129 79.84 1368 reject_low 5 ALIGNMENT 21 Y12-1b14.p1k chr02 953 992 197723 197762 F 40 87.50 1368 reject_low 7 ALIGNMENT 995 Y12-1b15.p1k chr02 1188 33 542763 543932 C 1156 96.54 1350 accept 0 ALIGNMENT 1037 Y12-1b15.q1k chr02 38 1262 539694 540925 F 1225 95.67 1334 accept 0 ALIGNMENT 1021 Y12-1b16.p1k chr12 1213 19 32974 34179 C 1195 96.49 1385 accept 0 ALIGNMENT 1022 Y12-1b16.q1k chr12 32 1251 29098 30330 F 1220 95.41 1315 accept 0 ALIGNMENT 941 Y12-1b17.q1k chr08 1135 31 457374 458482 C 1105 95.75 1305 accept 0 ALIGNMENT 1037 Y12-1b17.p1k chr08 19 1309 454609 455890 F 1291 94.89 1369 accept 0 ALIGNMENT 984 Y12-1b18.q1k chr15 33 1168 843845 844993 F 1136 97.18 1296 accept 0 ALIGNMENT 980 Y12-1b18.p1k chr15 1181 19 847544 848723 C 1163 96.22 1400 accept 0 ALIGNMENT 999 Y12-1b19.q1k chr16 1186 36 363688 364853 C 1151 96.52 1286 accept 0 ALIGNMENT 998 Y12-1b19.p1k chr16 19 1220 359898 361112 F 1202 95.01 1316 accept 0 ALIGNMENT 0 Y12-1b21.p1k chr07 62 76 822747 822746 F 15 0.00 1261 ambiguous_trans 9 ALIGNMENT 0 Y12-1b21.p1k chr10 76 62 472948 472947 C 15 0.00 1261 ambiguous_trans 7 ALIGNMENT 440 Y12-1b21.p1k chr08 77 641 549073 549637 F 565 93.45 1261 ambiguous_trans 12 ALIGNMENT 308 Y12-1b21.p1k chr07 641 310 535215 535546 C 332 99.40 1261 reject_low 22 ALIGNMENT 311 Y12-1b21.p1k chr13 310 642 357004 357336 F 333 99.70 1261 reject_low 20 ALIGNMENT 0 Y12-1b21.p1k chr10 857 642 472378 472377 C 216 0.00 1261 ambiguous_trans 7 ALIGNMENT 0 Y12-1b21.p1k chr07 309 62 535547 535546 C 248 0.00 1261 reject_low 22 ALIGNMENT 0 Y12-1b21.p1k chr14 62 309 96610 96609 F 248 0.00 1261 reject_low 21 ALIGNMENT 0 Y12-1b21.p1k chr01 643 857 160576 160575 F 215 0.00 1261 reject_low 23 ALIGNMENT 0 Y12-1b21.p1k chr14 857 643 102549 102548 C 215 0.00 1261 reject_low 25 ALIGNMENT 417 Y12-1b21.p1k chr16 641 77 844408 844978 C 565 92.21 1261 ambiguous_trans 17 ALIGNMENT 0 Y12-1b21.p1k chr16 857 642 844409 844408 C 216 0.00 1261 ambiguous_trans 17 ALIGNMENT 0 Y12-1b21.p1k chr14 643 857 96942 96941 F 215 0.00 1261 reject_low 21 ALIGNMENT 385 Y12-1b21.p1k chr01 77 641 165594 166163 F 565 90.62 1261 reject_low 19 ALIGNMENT 0 Y12-1b21.p1k chr15 393 62 594760 594759 C 332 0.00 1261 reject_low 24 ALIGNMENT 0 Y12-1b21.p1k chr13 857 642 184171 184170 C 216 0.00 1261 ambiguous_trans 13 ALIGNMENT 0 Y12-1b21.p1k chr15 857 642 117703 117702 C 216 0.00 1261 ambiguous_trans 14 ALIGNMENT 0 Y12-1b21.p1k chr07 857 642 535765 535764 C 216 0.00 1261 ambiguous_trans 8 ALIGNMENT 30 Y12-1b21.p1k chr14 642 612 102548 102578 C 31 100.00 1261 reject_low 25 ALIGNMENT 450 Y12-1b21.p1k chr07 641 77 535764 536334 C 565 94.34 1261 ambiguous_trans 8 ALIGNMENT 0 Y12-1b21.p1k chr13 643 857 362918 362917 F 215 0.00 1261 ambiguous_trans 2 ALIGNMENT 0 Y12-1b21.p1k chr02 857 646 259573 259572 C 212 0.00 1261 ambiguous_trans 6 ALIGNMENT 414 Y12-1b21.p1k chr12 77 641 220436 221006 F 565 92.04 1261 ambiguous_trans_ua 18 ALIGNMENT 0 Y12-1b21.p1k chr04 857 642 802901 802900 C 216 0.00 1261 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-1b21.p1k chr02 76 62 260141 260140 C 15 0.00 1261 ambiguous_trans 6 ALIGNMENT 0 Y12-1b21.p1k chr08 642 857 549637 549636 F 216 0.00 1261 ambiguous_trans 12 ALIGNMENT 0 Y12-1b21.p1k chr12 62 76 220436 220435 F 15 0.00 1261 ambiguous_trans_ua 18 ALIGNMENT 0 Y12-1b21.p1k chr13 642 857 378621 378620 F 216 0.00 1261 ambiguous_trans 16 ALIGNMENT 587 Y12-1b21.p1k chr13 32 642 362307 362918 F 611 99.51 1261 ambiguous_trans 2 ALIGNMENT 0 Y12-1b21.p1k chr12 642 857 221006 221005 F 216 0.00 1261 ambiguous_trans_ua 18 ALIGNMENT 0 Y12-1b21.p1k chr08 62 76 549073 549072 F 15 0.00 1261 ambiguous_trans 12 ALIGNMENT 0 Y12-1b21.p1k chr16 62 76 855980 855979 F 15 0.00 1261 ambiguous_trans 11 ALIGNMENT 0 Y12-1b21.p1k chr15 76 62 595386 595385 C 15 0.00 1261 ambiguous_trans 10 ALIGNMENT 308 Y12-1b21.p1k chr14 310 642 96610 96942 F 333 99.40 1261 reject_low 21 ALIGNMENT 0 Y12-1b21.p1k chr04 857 642 1095763 1095762 C 216 0.00 1261 ambiguous_trans 15 ALIGNMENT 0 Y12-1b21.p1k chr13 76 62 184735 184734 C 15 0.00 1261 ambiguous_trans 13 ALIGNMENT 440 Y12-1b21.p1k chr13 641 77 184170 184734 C 565 93.45 1261 ambiguous_trans 13 ALIGNMENT 85 Y12-1b21.p1k chr15 523 394 594630 594759 C 130 90.77 1261 reject_low 24 ALIGNMENT 417 Y12-1b21.p1k chr04 641 77 1095762 1096332 C 565 92.21 1261 ambiguous_trans 15 ALIGNMENT 0 Y12-1b21.p1k chr01 62 641 182818 182817 F 580 0.00 1261 accept_chi 1 ALIGNMENT 1057 Y12-1b21.q1k chr13 1283 36 841446 842703 C 1248 95.43 1283 accept_chi 0 ALIGNMENT 443 Y12-1b21.p1k chr02 645 77 259572 260140 C 569 93.50 1261 ambiguous_trans 6 ALIGNMENT 0 Y12-1b21.p1k chr14 62 76 101959 101958 F 15 0.00 1261 ambiguous_trans 5 ALIGNMENT 446 Y12-1b21.p1k chr07 77 641 822747 823311 F 565 93.81 1261 ambiguous_trans 9 ALIGNMENT 461 Y12-1b21.p1k chr14 77 641 101959 102523 F 565 94.87 1261 ambiguous_trans 5 ALIGNMENT 453 Y12-1b21.p1k chr10 641 77 472377 472947 C 565 94.34 1261 ambiguous_trans 7 ALIGNMENT 0 Y12-1b21.p1k chr13 62 309 357004 357003 F 248 0.00 1261 reject_low 20 ALIGNMENT 0 Y12-1b21.p1k chr01 62 309 160239 160238 F 248 0.00 1261 reject_low 23 ALIGNMENT 0 Y12-1b21.p1k chr01 62 76 165594 165593 F 15 0.00 1261 reject_low 19 ALIGNMENT 0 Y12-1b21.p1k chr04 76 62 1096333 1096332 C 15 0.00 1261 ambiguous_trans 15 ALIGNMENT 0 Y12-1b21.p1k chr14 642 857 102523 102522 F 216 0.00 1261 ambiguous_trans 5 ALIGNMENT 126 Y12-1b21.p1k chr01 642 777 182818 182953 F 136 99.26 1261 accept_chi 1 ALIGNMENT 0 Y12-1b21.p1k chr13 62 76 378051 378050 F 15 0.00 1261 ambiguous_trans 16 ALIGNMENT 446 Y12-1b21.p1k chr15 641 77 594821 595385 C 565 93.81 1261 ambiguous_trans 10 ALIGNMENT 577 Y12-1b21.p1k chr02 641 32 221040 221652 C 610 99.02 1261 ambiguous_trans 3 ALIGNMENT 435 Y12-1b21.p1k chr15 641 77 117702 118272 C 565 93.27 1261 ambiguous_trans 14 ALIGNMENT 0 Y12-1b21.p1k chr15 857 642 594822 594821 C 216 0.00 1261 ambiguous_trans 10 ALIGNMENT 546 Y12-1b21.p1k chr04 641 32 802900 803509 C 610 97.38 1261 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-1b21.p1k chr07 857 642 535216 535215 C 216 0.00 1261 reject_low 22 ALIGNMENT 0 Y12-1b21.p1k chr13 643 857 357336 357335 F 215 0.00 1261 reject_low 20 ALIGNMENT 417 Y12-1b21.p1k chr13 77 641 378051 378621 F 565 92.21 1261 ambiguous_trans 16 ALIGNMENT 0 Y12-1b21.p1k chr01 778 857 182953 182952 F 80 0.00 1261 accept_chi 1 ALIGNMENT 0 Y12-1b21.p1k chr15 76 62 118273 118272 C 15 0.00 1261 ambiguous_trans 14 ALIGNMENT 0 Y12-1b21.p1k chr07 642 857 823311 823310 F 216 0.00 1261 ambiguous_trans 9 ALIGNMENT 0 Y12-1b21.p1k chr02 857 642 221041 221040 C 216 0.00 1261 ambiguous_trans 3 ALIGNMENT 0 Y12-1b21.p1k chr14 611 62 102579 102578 C 550 0.00 1261 reject_low 25 ALIGNMENT 0 Y12-1b21.p1k chr07 76 62 536335 536334 C 15 0.00 1261 ambiguous_trans 8 ALIGNMENT 444 Y12-1b21.p1k chr16 77 641 855980 856550 F 565 93.81 1261 ambiguous_trans 11 ALIGNMENT 215 Y12-1b21.p1k chr01 310 642 160239 160576 F 333 90.39 1261 reject_low 23 ALIGNMENT 0 Y12-1b21.p1k chr16 642 857 856550 856549 F 216 0.00 1261 ambiguous_trans 11 ALIGNMENT 0 Y12-1b21.p1k chr15 857 524 594631 594630 C 334 0.00 1261 reject_low 24 ALIGNMENT 0 Y12-1b21.p1k chr01 642 857 166163 166162 F 216 0.00 1261 reject_low 19 ALIGNMENT 0 Y12-1b21.p1k chr16 76 62 844979 844978 C 15 0.00 1261 ambiguous_trans 17 ALIGNMENT 908 Y12-1b22.p1k chr11 19 1144 651938 653084 F 1126 95.65 1299 accept 0 ALIGNMENT 921 Y12-1b22.q1k chr11 1080 36 655341 656385 C 1045 96.56 1293 accept 0 ALIGNMENT 1079 Y12-1c02.q1k chr13 1272 34 76630 77880 C 1239 96.29 1314 accept 0 ALIGNMENT 926 Y12-1c02.p1k chr13 16 1186 72257 73427 F 1171 94.28 1385 accept 0 ALIGNMENT 912 Y12-1c03.q1k chr11 1101 36 346320 347401 C 1066 96.81 1287 accept 0 ALIGNMENT 975 Y12-1c03.p1k chr11 13 1179 341220 342400 F 1167 95.72 1364 accept 0 ALIGNMENT 990 Y12-1c04.p1k chr10 20 1237 428577 429808 F 1218 95.57 1377 accept_chi 0 ALIGNMENT 203 Y12-1c04.q1k chr03 1 382 92895 93257 F 382 87.70 703 accept_chi 1 ALIGNMENT 917 Y12-1c05.q1k chr15 33 1106 946071 947158 F 1074 95.90 1258 accept 0 ALIGNMENT 977 Y12-1c05.p1k chr15 1184 20 950804 951987 C 1165 96.39 1342 accept 0 ALIGNMENT 0 Y12-1c06.q1k chr13 62 504 378621 378620 F 443 0.00 1353 reject_low 32 ALIGNMENT 0 Y12-1c06.q1k chr14 626 62 525065 525064 C 565 0.00 1353 reject_low 38 ALIGNMENT 108 Y12-1c06.q1k chr15 965 648 117705 118019 C 318 81.45 1353 reject_low 13 ALIGNMENT 0 Y12-1c06.q1k chr13 62 463 189783 189782 F 402 0.00 1353 reject_low 20 ALIGNMENT 31 Y12-1c06.q1k chr13 589 464 378462 378590 C 126 79.37 1353 reject_low 24 ALIGNMENT 0 Y12-1c06.q1k chr07 463 62 823281 823280 C 402 0.00 1353 reject_low 17 ALIGNMENT 31 Y12-1c06.q1k chr15 464 589 117733 117861 F 126 79.37 1353 reject_low 25 ALIGNMENT 32 Y12-1c06.q1k chr08 589 482 91937 92046 C 108 82.41 1353 reject_low 26 ALIGNMENT 25 Y12-1c06.q1k chr14 965 891 524733 524808 C 75 80.00 1353 reject_low 38 ALIGNMENT 0 Y12-1c06.q1k chr14 590 932 524888 524887 F 343 0.00 1353 reject_low 29 ALIGNMENT 34 Y12-1c06.q1k chr07 464 588 401993 402119 F 125 80.00 1353 reject_low 22 ALIGNMENT 1043 Y12-1c06.p1k chr16 1333 21 445271 446570 C 1313 95.20 1433 accept_trans 0 ALIGNMENT 37 Y12-1c06.q1k chr07 588 464 823154 823280 C 125 80.80 1353 reject_low 17 ALIGNMENT 0 Y12-1c06.q1k chr15 590 932 117861 117860 F 343 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-1c06.q1k chr10 62 641 354774 354773 F 580 0.00 1353 reject_low 33 ALIGNMENT 32 Y12-1c06.q1k chr03 482 589 82748 82857 F 108 82.41 1353 reject_low 37 ALIGNMENT 0 Y12-1c06.q1k chr11 463 62 458084 458083 C 402 0.00 1353 reject_low 19 ALIGNMENT 0 Y12-1c06.q1k chr11 62 625 457781 457780 F 564 0.00 1353 reject_low 9 ALIGNMENT 0 Y12-1c06.q1k chr13 62 647 378304 378303 F 586 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-1c06.q1k chr12 62 647 215101 215100 F 586 0.00 1353 reject_low 11 ALIGNMENT 0 Y12-1c06.q1k chr02 62 463 265192 265191 F 402 0.00 1353 reject_low 16 ALIGNMENT 66 Y12-1c06.q1k chr14 735 627 524956 525064 C 109 90.83 1353 reject_low 38 ALIGNMENT 113 Y12-1c06.q1k chr10 632 946 354454 354759 F 315 82.54 1353 reject_low 10 ALIGNMENT 0 Y12-1c06.q1k chr12 932 590 215260 215259 C 343 0.00 1353 reject_low 23 ALIGNMENT 120 Y12-1c06.q1k chr07 648 965 823000 823308 F 318 83.02 1353 reject_low 4 ALIGNMENT 65 Y12-1c06.q1k chr14 735 628 519390 519497 C 108 90.74 1353 reject_low 31 ALIGNMENT 0 Y12-1c06.q1k chr08 736 890 91870 92016 F 155 0.00 1353 reject_low 39 ALIGNMENT 117 Y12-1c06.q1k chr16 628 965 850625 850959 F 338 81.66 1353 reject_low 34 ALIGNMENT 0 Y12-1c06.q1k chr03 590 626 82858 83052 F 37 0.00 1353 reject_low 37 ALIGNMENT 21 Y12-1c06.q1k chr13 505 578 378621 378695 F 74 81.08 1353 reject_low 32 ALIGNMENT 117 Y12-1c06.q1k chr13 965 648 189755 190063 C 318 82.70 1353 reject_low 7 ALIGNMENT 85 Y12-1c06.q1k chr16 262 347 775754 775839 F 86 100.00 1353 reject_low 1 ALIGNMENT 60 Y12-1c06.q1k chr03 627 749 83053 83176 F 123 86.99 1353 reject_low 37 ALIGNMENT 0 Y12-1c06.q1k chr08 932 590 91938 91937 C 343 0.00 1353 reject_low 26 ALIGNMENT 37 Y12-1c06.q1k chr13 464 588 189783 189909 F 125 80.80 1353 reject_low 20 ALIGNMENT 0 Y12-1c06.q1k chr07 62 647 823000 822999 F 586 0.00 1353 reject_low 4 ALIGNMENT 0 Y12-1c06.q1k chr03 626 62 83037 83036 C 565 0.00 1353 reject_low 15 ALIGNMENT 98 Y12-1c06.q1k chr12 628 965 475975 476308 F 338 79.88 1353 reject_low 14 ALIGNMENT 0 Y12-1c06.q1k chr13 579 932 378695 378694 F 354 0.00 1353 reject_low 32 ALIGNMENT 0 Y12-1c06.q1k chr14 627 62 519498 519497 C 566 0.00 1353 reject_low 31 ALIGNMENT 0 Y12-1c06.q1k chr16 590 627 844568 850624 F 38 0.00 1353 reject_low 34 ALIGNMENT 0 Y12-1c06.q1k chr02 647 62 265473 265472 C 586 0.00 1353 reject_low 5 ALIGNMENT 126 Y12-1c06.q1k chr14 627 965 96609 96938 F 339 82.89 1353 reject_low 3 ALIGNMENT 0 Y12-1c06.q1k chr12 481 62 476263 476262 C 420 0.00 1353 reject_low 27 ALIGNMENT 0 Y12-1c06.q1k chr08 627 589 134003 134058 C 39 0.00 1353 reject_low 35 ALIGNMENT 44 Y12-1c06.q1k chr10 642 735 354774 354865 F 94 87.23 1353 reject_low 33 ALIGNMENT 0 Y12-1c06.q1k chr08 481 62 134167 134166 C 420 0.00 1353 reject_low 35 ALIGNMENT 0 Y12-1c06.q1k chr08 589 932 133828 133827 F 344 0.00 1353 reject_low 30 ALIGNMENT 0 Y12-1c06.q1k chr14 62 481 524779 524778 F 420 0.00 1353 reject_low 29 ALIGNMENT 0 Y12-1c06.q1k chr08 62 473 133713 133712 F 412 0.00 1353 reject_low 30 ALIGNMENT 0 Y12-1c06.q1k chr10 62 631 354454 354453 F 570 0.00 1353 reject_low 10 ALIGNMENT 0 Y12-1c06.q1k chr16 62 463 844439 844438 F 402 0.00 1353 reject_low 34 ALIGNMENT 112 Y12-1c06.q1k chr11 626 965 457781 458111 F 340 81.47 1353 reject_low 9 ALIGNMENT 117 Y12-1c06.q1k chr08 648 965 543630 543938 F 318 82.70 1353 reject_low 6 ALIGNMENT 108 Y12-1c06.q1k chr13 648 965 378304 378618 F 318 81.45 1353 reject_low 12 ALIGNMENT 0 Y12-1c06.q1k chr15 647 62 118020 118019 C 586 0.00 1353 reject_low 13 ALIGNMENT 32 Y12-1c06.q1k chr14 482 589 519213 519322 F 108 82.41 1353 reject_low 28 ALIGNMENT 54 Y12-1c06.q1k chr08 639 735 91774 91869 F 97 89.69 1353 reject_low 39 ALIGNMENT 0 Y12-1c06.q1k chr16 647 590 844726 850802 C 58 0.00 1353 reject_low 36 ALIGNMENT 114 Y12-1c06.q1k chr07 965 627 401965 402294 C 339 81.71 1353 reject_low 8 ALIGNMENT 0 Y12-1c06.q1k chr07 345 932 707185 707184 F 588 0.00 1353 reject_low 2 ALIGNMENT 0 Y12-1c06.q1k chr10 736 932 354865 354864 F 197 0.00 1353 reject_low 33 ALIGNMENT 117 Y12-1c06.q1k chr02 965 648 265164 265472 C 318 82.70 1353 reject_low 5 ALIGNMENT 37 Y12-1c06.q1k chr14 588 464 96784 96910 C 125 80.80 1353 reject_low 21 ALIGNMENT 0 Y12-1c06.q1k chr16 62 261 775754 775753 F 200 0.00 1353 reject_low 1 ALIGNMENT 1031 Y12-1c06.q1k chr16 33 1228 435652 436850 F 1196 97.41 1353 accept_trans 0 ALIGNMENT 0 Y12-1c06.q1k chr07 626 62 402295 402294 C 565 0.00 1353 reject_low 8 ALIGNMENT 32 Y12-1c06.q1k chr14 482 589 524779 524888 F 108 82.41 1353 reject_low 29 ALIGNMENT 0 Y12-1c06.q1k chr15 62 463 117733 117732 F 402 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-1c06.q1k chr03 62 481 82748 82747 F 420 0.00 1353 reject_low 37 ALIGNMENT 0 Y12-1c06.q1k chr14 890 736 524809 524955 C 155 0.00 1353 reject_low 38 ALIGNMENT 0 Y12-1c06.q1k chr08 481 62 92047 92046 C 420 0.00 1353 reject_low 26 ALIGNMENT 0 Y12-1c06.q1k chr13 589 932 189909 189908 F 344 0.00 1353 reject_low 20 ALIGNMENT 0 Y12-1c06.q1k chr14 590 932 519322 519321 F 343 0.00 1353 reject_low 28 ALIGNMENT 0 Y12-1c06.q1k chr12 932 590 476154 476153 C 343 0.00 1353 reject_low 27 ALIGNMENT 37 Y12-1c06.q1k chr02 464 588 265192 265318 F 125 80.80 1353 reject_low 16 ALIGNMENT 35 Y12-1c06.q1k chr08 588 482 134059 134166 C 107 82.24 1353 reject_low 35 ALIGNMENT 0 Y12-1c06.q1k chr08 932 589 543785 543784 C 344 0.00 1353 reject_low 18 ALIGNMENT 0 Y12-1c06.q1k chr13 463 62 378591 378590 C 402 0.00 1353 reject_low 24 ALIGNMENT 0 Y12-1c06.q1k chr07 589 932 402119 402118 F 344 0.00 1353 reject_low 22 ALIGNMENT 76 Y12-1c06.q1k chr07 269 344 707110 707185 F 76 100.00 1353 reject_low 2 ALIGNMENT 31 Y12-1c06.q1k chr08 474 588 133713 133828 F 115 80.00 1353 reject_low 30 ALIGNMENT 37 Y12-1c06.q1k chr08 588 464 543784 543910 C 125 80.80 1353 reject_low 18 ALIGNMENT 108 Y12-1c06.q1k chr12 648 965 215101 215415 F 318 81.45 1353 reject_low 11 ALIGNMENT 0 Y12-1c06.q1k chr14 62 481 519213 519212 F 420 0.00 1353 reject_low 28 ALIGNMENT 0 Y12-1c06.q1k chr16 463 62 850932 850931 C 402 0.00 1353 reject_low 36 ALIGNMENT 0 Y12-1c06.q1k chr07 62 268 707110 707109 F 207 0.00 1353 reject_low 2 ALIGNMENT 0 Y12-1c06.q1k chr12 62 627 475975 475974 F 566 0.00 1353 reject_low 14 ALIGNMENT 108 Y12-1c06.q1k chr16 965 648 844411 844725 C 318 81.45 1353 reject_low 36 ALIGNMENT 0 Y12-1c06.q1k chr11 932 589 457958 457957 C 344 0.00 1353 reject_low 19 ALIGNMENT 0 Y12-1c06.q1k chr08 463 62 543911 543910 C 402 0.00 1353 reject_low 18 ALIGNMENT 0 Y12-1c06.q1k chr14 62 626 96609 96608 F 565 0.00 1353 reject_low 3 ALIGNMENT 31 Y12-1c06.q1k chr16 464 589 844439 844567 F 126 79.37 1353 reject_low 34 ALIGNMENT 0 Y12-1c06.q1k chr08 62 647 543630 543629 F 586 0.00 1353 reject_low 6 ALIGNMENT 0 Y12-1c06.q1k chr13 647 62 190064 190063 C 586 0.00 1353 reject_low 7 ALIGNMENT 0 Y12-1c06.q1k chr03 750 932 83176 83175 F 183 0.00 1353 reject_low 37 ALIGNMENT 0 Y12-1c06.q1k chr12 463 62 215388 215387 C 402 0.00 1353 reject_low 23 ALIGNMENT 0 Y12-1c06.q1k chr13 932 590 378463 378462 C 343 0.00 1353 reject_low 24 ALIGNMENT 0 Y12-1c06.q1k chr02 589 932 265318 265317 F 344 0.00 1353 reject_low 16 ALIGNMENT 0 Y12-1c06.q1k chr08 62 638 91774 91773 F 577 0.00 1353 reject_low 39 ALIGNMENT 37 Y12-1c06.q1k chr11 588 464 457957 458083 C 125 80.80 1353 reject_low 19 ALIGNMENT 0 Y12-1c06.q1k chr07 932 589 823155 823154 C 344 0.00 1353 reject_low 17 ALIGNMENT 0 Y12-1c06.q1k chr14 932 589 96785 96784 C 344 0.00 1353 reject_low 21 ALIGNMENT 112 Y12-1c06.q1k chr08 951 628 133690 134002 C 324 81.79 1353 reject_low 35 ALIGNMENT 0 Y12-1c06.q1k chr14 463 62 96911 96910 C 402 0.00 1353 reject_low 21 ALIGNMENT 25 Y12-1c06.q1k chr08 891 965 92017 92092 F 75 80.00 1353 reject_low 39 ALIGNMENT 0 Y12-1c06.q1k chr14 932 736 519391 519390 C 197 0.00 1353 reject_low 31 ALIGNMENT 0 Y12-1c06.q1k chr07 62 463 401993 401992 F 402 0.00 1353 reject_low 22 ALIGNMENT 97 Y12-1c06.q1k chr03 965 627 82702 83036 C 339 79.94 1353 reject_low 15 ALIGNMENT 31 Y12-1c06.q1k chr16 589 464 850803 850931 C 126 79.37 1353 reject_low 36 ALIGNMENT 0 Y12-1c06.q1k chr16 348 932 775839 775838 F 585 0.00 1353 reject_low 1 ALIGNMENT 32 Y12-1c06.q1k chr12 589 482 476153 476262 C 108 82.41 1353 reject_low 27 ALIGNMENT 31 Y12-1c06.q1k chr12 589 464 215259 215387 C 126 79.37 1353 reject_low 23 ALIGNMENT 979 Y12-1c08.q1k chr15 1260 36 131413 132664 C 1225 94.94 1327 accept 0 ALIGNMENT 985 Y12-1c08.p1k chr15 24 1161 127917 129069 F 1138 96.40 1337 accept 0 ALIGNMENT 1065 Y12-1c09.q1k chr10 40 1281 507664 508906 F 1242 96.30 1349 accept 0 ALIGNMENT 961 Y12-1c09.p1k chr10 1147 21 510826 511973 C 1127 96.54 1362 accept 0 ALIGNMENT 985 Y12-1c10.q1k chr04 37 1186 281279 282441 F 1150 96.70 1335 accept 0 ALIGNMENT 1020 Y12-1c10.p1k chr04 1181 22 285681 286856 C 1160 96.81 1376 accept 0 ALIGNMENT 737 Y12-1c11.q1k chr13 34 984 17544 18489 F 951 93.38 1468 accept 0 ALIGNMENT 964 Y12-1c11.p1k chr13 1167 19 22777 23940 C 1149 95.56 1325 accept 0 ALIGNMENT 908 Y12-1c12.p1k chr02 20 1044 439483 440525 F 1025 97.56 1285 accept 0 ALIGNMENT 1021 Y12-1c12.q1k chr02 1201 36 443869 445048 C 1166 96.74 1339 accept 0 ALIGNMENT 1002 Y12-1c13.p1k chr02 1215 19 361605 362812 C 1197 96.41 1379 accept 0 ALIGNMENT 860 Y12-1c13.q1k chr02 35 1098 357121 358183 F 1064 94.55 1321 accept 0 ALIGNMENT 1069 Y12-1c15.q1k chr13 38 1307 556376 557660 F 1270 95.59 1308 accept 0 ALIGNMENT 1088 Y12-1c15.p1k chr13 1311 21 560470 561766 C 1291 95.51 1373 accept 0 ALIGNMENT 1009 Y12-1c16.q1k chr04 35 1210 1328465 1329661 F 1176 96.26 1302 accept 0 ALIGNMENT 0 Y12-1c16.q1k chr04 62 440 1328919 1328918 F 379 0.00 1302 reject_low 1 ALIGNMENT 992 Y12-1c16.p1k chr04 1218 23 1332965 1334176 C 1196 95.23 1345 accept 0 ALIGNMENT 0 Y12-1c16.q1k chr04 472 856 1328949 1328948 F 385 0.00 1302 reject_low 1 ALIGNMENT 20 Y12-1c16.q1k chr04 441 471 1328919 1328949 F 31 90.32 1302 reject_low 1 ALIGNMENT 904 Y12-1c17.q1k chr09 1304 38 78478 79728 C 1267 93.69 1322 accept 0 ALIGNMENT 981 Y12-1c17.p1k chr09 20 1271 75778 77019 F 1252 94.25 1370 accept 0 ALIGNMENT 39 Y12-1c18.p1k chrm 280 173 77100 77211 C 108 96.30 1339 accept 0 ALIGNMENT 0 Y12-1c18.q1k chrm 660 863 74801 74975 F 204 0.00 1334 accept 0 ALIGNMENT 0 Y12-1c18.p1k chrm 229 598 2747 2746 F 370 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-1c18.p1k chrm 598 129 77054 77053 C 470 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-1c18.p1k chrm 172 62 77212 77211 C 111 0.00 1339 accept 0 ALIGNMENT 31 Y12-1c18.p1k chrm 39 88 5205 5256 F 50 90.00 1339 reject_low 5 ALIGNMENT 38 Y12-1c18.p1k chrm 128 81 77053 77099 C 48 95.83 1339 reject_low 1 ALIGNMENT 0 Y12-1c18.p1k chrm 598 216 34069 34068 C 383 0.00 1339 reject_low 2 ALIGNMENT 0 Y12-1c18.p1k chrm 598 128 40349 40348 C 471 0.00 1339 reject_low 4 ALIGNMENT 332 Y12-1c18.q1k chrm 33 659 74195 74800 F 627 89.79 1334 accept 0 ALIGNMENT 0 Y12-1c18.p1k chrm 281 281 77064 77099 C 1 0.00 1339 accept 0 ALIGNMENT 29 Y12-1c18.p1k chrm 39 118 84193 84269 F 80 86.25 1339 reject_low 6 ALIGNMENT 229 Y12-1c18.p1k chrm 683 282 76677 77063 C 402 91.29 1339 accept 0 ALIGNMENT 0 Y12-1c18.p1k chrm 80 62 77100 77099 C 19 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-1c18.p1k chrm 89 88 68667 72798 F 0 0.00 1339 reject_low 8 ALIGNMENT 55 Y12-1c18.p1k chrm 215 19 34068 34262 C 197 80.20 1339 reject_low 2 ALIGNMENT 24 Y12-1c18.p1k chrm 87 32 44197 44248 C 56 87.50 1339 reject_low 7 ALIGNMENT 0 Y12-1c18.p1k chrm 119 598 84269 84268 F 480 0.00 1339 reject_low 6 ALIGNMENT 28 Y12-1c18.p1k chrm 81 239 72791 72949 F 159 79.87 1339|8,0 reject_low 8 ALIGNMENT 0 Y12-1c18.q1k chrm 62 863 74976 74975 F 802 0.00 1334 reject_low 1 ALIGNMENT 61 Y12-1c18.p1k chrm 39 228 2552 2747 F 190 81.58 1339 reject_low 3 ALIGNMENT 43 Y12-1c18.p1k chrm 32 95 68605 68673 F 64 92.19 1339|0,7 reject_low 8 ALIGNMENT 69 Y12-1c18.p1k chrm 127 32 40348 40442 C 96 93.75 1339 reject_low 4 ALIGNMENT 0 Y12-1c18.p1k chrm 89 598 5256 5255 F 510 0.00 1339 reject_low 5 ALIGNMENT 0 Y12-1c18.p1k chrm 240 598 72949 72948 F 359 0.00 1339 reject_low 8 ALIGNMENT 99 Y12-1c18.q1k chrm 864 1080 74976 75192 F 217 88.94 1334 accept 0 reject_low 1 ALIGNMENT 0 Y12-1c18.p1k chrm 598 88 44198 44197 C 511 0.00 1339 reject_low 7 ALIGNMENT 972 Y12-1c19.p1k chr13 1193 20 438534 439705 C 1174 95.40 1357 accept 0 ALIGNMENT 1052 Y12-1c19.q1k chr13 39 1247 434219 435435 F 1209 96.03 1347 accept 0 ALIGNMENT 1062 Y12-1c20.q1k chr12 1247 38 461624 462848 C 1210 96.36 1333 accept 0 ALIGNMENT 1025 Y12-1c20.p1k chr12 33 1235 457068 458284 F 1203 95.84 1354 accept 0 ALIGNMENT 1062 Y12-1c20.q1k chr12 1247 38 452487 453711 C 1210 96.36 1333 reject_low 1 ALIGNMENT 1025 Y12-1c20.p1k chr12 33 1235 466205 467421 F 1203 95.84 1354 reject_low 2 ALIGNMENT 935 Y12-1c21.p1k chr12 19 1122 467245 468357 F 1104 96.56 1250 accept_chi 2 ALIGNMENT 1016 Y12-1c21.q1k chr08 1243 32 258115 259341 C 1212 95.87 1243 accept_chi 0 ALIGNMENT 935 Y12-1c21.p1k chr12 19 1122 458108 459220 F 1104 96.56 1250 accept_chi 1 ALIGNMENT 1049 Y12-1c22.q1k chr12 34 1273 893825 895062 F 1240 95.97 1273 accept 0 ALIGNMENT 0 Y12-1c22.p1k chr04 170 856 340801 340800 F 687 0.00 1249 reject_low 1 ALIGNMENT 113 Y12-1c22.p1k chr04 19 169 340650 340801 F 151 92.05 1249 reject_low 1 ALIGNMENT 1014 Y12-1c22.p1k chr12 1233 19 897585 898799 C 1215 95.72 1249 accept 0 ALIGNMENT 191 Y12-1c24.q1k chr07 319 13 182197 182503 C 307 88.93 1399 accept 0 ALIGNMENT 194 Y12-1c24.p1k chr07 21 233 179520 179734 F 213 98.59 1611 accept 0 ALIGNMENT 1031 Y12-1d02.q1k chr14 1220 36 178641 179836 C 1185 97.13 1295 accept 0 ALIGNMENT 667 Y12-1d02.p1k chr14 19 952 174207 175139 F 934 92.08 1365 accept 0 ALIGNMENT 956 Y12-1d03.p1k chr12 1138 24 640038 641164 C 1115 96.68 1374 accept 0 ALIGNMENT 916 Y12-1d03.q1k chr12 38 1061 635855 636890 F 1024 97.75 1281 accept 0 ALIGNMENT 1047 Y12-1d04.q1k chr11 38 1255 433277 434503 F 1218 96.55 1310 accept_chi 0 ALIGNMENT 960 Y12-1d04.p1k chr14 19 1099 578872 579959 F 1081 97.41 1412 accept_chi 1 ALIGNMENT 1009 Y12-1d05.p1k chr13 24 1218 905348 906531 F 1195 95.82 1403 accept 0 ALIGNMENT 1056 Y12-1d05.q1k chr13 1268 33 910402 911642 C 1236 95.79 1341 accept 0 ALIGNMENT 156 Y12-1d06.q1k chr12 202 25 376529 376709 C 178 97.75 1330 accept 0 ALIGNMENT 628 Y12-1d06.p1k chr12 28 976 371787 372731 F 949 89.67 1436 accept 0 ALIGNMENT 963 Y12-1d07.p1k chr12 17 1122 152710 153829 F 1106 97.20 1339 accept 0 ALIGNMENT 989 Y12-1d07.q1k chr12 1144 37 155681 156803 C 1108 97.65 1321 accept 0 ALIGNMENT 799 Y12-1d08.p1k chr05 20 1060 343289 344333 F 1041 93.47 1368 accept 0 ALIGNMENT 961 Y12-1d08.q1k chr05 1218 40 346014 347206 C 1179 95.08 1311 accept 0 ALIGNMENT 1020 Y12-1d09.q1k chr07 34 1228 176708 177911 F 1195 96.07 1351 accept 0 ALIGNMENT 902 Y12-1d09.p1k chr07 1134 20 179602 180729 C 1115 95.07 1368 accept 0 ALIGNMENT 1010 Y12-1d10.q1k chr08 38 1238 39059 40280 F 1201 95.92 1318 accept 0 ALIGNMENT 985 Y12-1d10.p1k chr08 1175 22 43957 45126 C 1154 96.53 1399 accept 0 ALIGNMENT 572 Y12-1d11.p1k chr12 241 1244 1065050 1066017 F 1004 89.04 1343 reject_low 8 ALIGNMENT 182 Y12-1d11.p1k chr08 20 343 562232 562556 F 324 90.12 1343 reject_low 21 ALIGNMENT 0 Y12-1d11.p1k chr14 274 62 6687 6686 C 213 0.00 1343 ambiguous_tel 2 ALIGNMENT 0 Y12-1d11.p1k chr10 822 298 6 5 C 525 0.00 1343 reject_low 20 ALIGNMENT 112 Y12-1d11.p1k chr16 20 197 947882 948062 F 178 90.45 1343 reject_low 25 ALIGNMENT 0 Y12-1d11.p1k chr07 183 822 1090943 1090942 F 640 0.00 1343 reject_low 27 ALIGNMENT 0 Y12-1d11.p1k chr13 298 62 5585 5584 C 237 0.00 1343 reject_low 13 ALIGNMENT 0 Y12-1d11.p1k chr02 338 62 5851 5850 C 277 0.00 1343 reject_low 16 ALIGNMENT 0 Y12-1d11.p1k chr06 242 62 4782 4781 C 181 0.00 1343 reject_low 12 ALIGNMENT 1057 Y12-1d11.q1k chr05 1256 28 573168 574402 C 1229 95.85 1357 ambiguous_tel 6 ALIGNMENT 1057 Y12-1d11.q1k chr14 28 1256 2489 3723 F 1229 95.85 1357 ambiguous_tel 2 ALIGNMENT 0 Y12-1d11.p1k chr16 343 62 6526 6525 C 282 0.00 1343 ambiguous_tel 4 ALIGNMENT 660 Y12-1d11.p1k chr12 1244 20 4744 5935 C 1225 88.00 1343 reject_low 9 ALIGNMENT 1063 Y12-1d11.q1k chr05 28 1256 2553 3787 F 1229 96.01 1357 reject_low 15 ALIGNMENT 638 Y12-1d11.p1k chr04 248 1244 1525355 1526368 F 997 90.27 1343 ambiguous_tel 3 ALIGNMENT 608 Y12-1d11.p1k chr12 335 1244 1071644 1072569 F 910 90.88 1343 reject_low 10 ALIGNMENT 153 Y12-1d11.p1k chr12 320 20 2 298 C 301 88.70 1343 reject_low 23 ALIGNMENT 1054 Y12-1d11.q1k chr12 1256 28 1067877 1069111 C 1229 95.77 1357 reject_low 8 ALIGNMENT 0 Y12-1d11.p1k chr14 344 822 784306 784305 F 479 0.00 1343 reject_low 30 ALIGNMENT 0 Y12-1d11.p1k chr05 62 343 570325 570324 F 282 0.00 1343 ambiguous_tel 6 ALIGNMENT 0 Y12-1d11.p1k chr13 822 296 3 2 C 527 0.00 1343 reject_low 22 ALIGNMENT 206 Y12-1d11.p1k chr10 297 20 5 285 C 278 94.96 1343 reject_low 20 ALIGNMENT 670 Y12-1d11.p1k chr12 1244 243 10279 11297 C 1002 91.12 1343 reject_low 11 ALIGNMENT 0 Y12-1d11.p1k chr14 62 247 784209 784208 F 186 0.00 1343 reject_low 30 ALIGNMENT 1011 Y12-1d11.q1k chr13 28 1156 2582 3710 F 1129 96.90 1357 reject_low 13 ALIGNMENT 1096 Y12-1d11.q1k chr10 28 1256 2860 4094 F 1229 96.91 1357 ambiguous_tel 0 ALIGNMENT 22 Y12-1d11.p1k chr14 248 343 784209 784306 F 96 93.75 1343 reject_low 30 ALIGNMENT 699 Y12-1d11.p1k chr14 1244 275 5694 6686 C 970 92.06 1343 ambiguous_tel 2 ALIGNMENT 701 Y12-1d11.p1k chr10 1244 392 6066 6931 C 853 95.19 1343 ambiguous_tel 0 ALIGNMENT 1054 Y12-1d11.q1k chr15 1256 28 1087504 1088738 C 1229 95.77 1357 reject_low 7 ALIGNMENT 0 Y12-1d11.p1k chr12 242 62 11298 11297 C 181 0.00 1343 reject_low 11 ALIGNMENT 608 Y12-1d11.p1k chr06 1244 243 3782 4781 C 1002 89.52 1343 reject_low 12 ALIGNMENT 1093 Y12-1d11.q1k chr09 28 1256 2877 4111 F 1229 96.83 1357 ambiguous_tel 1 ALIGNMENT 0 Y12-1d11.p1k chr02 822 115 3 2 C 708 0.00 1343 reject_low 28 ALIGNMENT 1010 Y12-1d11.q1k chr08 1156 28 558796 559925 C 1129 96.90 1357 reject_low 14 ALIGNMENT 1057 Y12-1d11.q1k chr16 28 1256 2398 3632 F 1229 95.85 1357 ambiguous_tel 4 ALIGNMENT 701 Y12-1d11.p1k chr09 1244 392 6083 6948 C 853 95.19 1343 ambiguous_tel 1 ALIGNMENT 647 Y12-1d11.p1k chr05 344 1244 570325 571214 F 901 92.79 1343 ambiguous_tel 6 ALIGNMENT 603 Y12-1d11.p1k chr08 241 1244 556891 557886 F 1004 89.34 1343 reject_low 14 ALIGNMENT 0 Y12-1d11.p1k chr16 62 628 942804 942803 F 567 0.00 1343 reject_low 17 ALIGNMENT 0 Y12-1d11.p1k chr15 62 343 1084616 1084615 F 282 0.00 1343 reject_low 7 ALIGNMENT 657 Y12-1d11.p1k chr16 1244 344 5603 6525 C 901 92.23 1343 ambiguous_tel 4 ALIGNMENT 656 Y12-1d11.p1k chr07 344 1244 1084352 1085274 F 901 92.45 1343 ambiguous_tel 5 ALIGNMENT 136 Y12-1d11.p1k chr12 20 250 1071417 1071651 F 231 89.18 1343 reject_low 10 ALIGNMENT 0 Y12-1d11.p1k chr12 251 334 1071652 1071643 F 84 0.00 1343 reject_low 10 ALIGNMENT 1054 Y12-1d11.q1k chr04 1256 28 1528339 1529573 C 1229 95.77 1357 ambiguous_tel 3 ALIGNMENT 0 Y12-1d11.p1k chr09 391 62 6949 6948 C 330 0.00 1343 ambiguous_tel 1 ALIGNMENT 0 Y12-1d11.p1k chr15 261 822 1091287 1091286 F 562 0.00 1343 reject_low 24 ALIGNMENT 0 Y12-1d11.p1k chr08 62 240 556891 556890 F 179 0.00 1343 reject_low 14 ALIGNMENT 1010 Y12-1d11.q1k chr02 28 1156 2906 4035 F 1129 96.90 1357 reject_low 16 ALIGNMENT 140 Y12-1d11.p1k chr15 20 260 1091044 1091287 F 241 89.21 1343 reject_low 24 ALIGNMENT 1011 Y12-1d11.q1k chr12 28 1156 2706 3834 F 1129 96.90 1357 reject_low 9,11 ALIGNMENT 450 Y12-1d11.p1k chr16 629 1244 942804 943432 F 616 92.69 1343 reject_low 17 ALIGNMENT 1057 Y12-1d11.q1k chr07 1256 28 1087245 1088479 C 1229 95.85 1357 ambiguous_tel 5 ALIGNMENT 0 Y12-1d11.p1k chr12 822 321 3 2 C 502 0.00 1343 reject_low 23 ALIGNMENT 0 Y12-1d11.p1k chr08 344 822 562556 562555 F 479 0.00 1343 reject_low 21 ALIGNMENT 631 Y12-1d11.p1k chr13 1244 299 4620 5584 C 946 90.91 1343 reject_low 13 ALIGNMENT 604 Y12-1d11.p1k chr15 344 1244 1084616 1085533 F 901 90.90 1343 reject_low 7 ALIGNMENT 152 Y12-1d11.p1k chr13 295 20 2 276 C 276 89.13 1343 reject_low 22 ALIGNMENT 107 Y12-1d11.p1k chr07 20 182 1090782 1090943 F 163 91.41 1343 reject_low 27 ALIGNMENT 0 Y12-1d11.p1k chr12 62 240 1065050 1065049 F 179 0.00 1343 reject_low 8 ALIGNMENT 0 Y12-1d11.p1k chr10 391 62 6932 6931 C 330 0.00 1343 ambiguous_tel 0 ALIGNMENT 357 Y12-1d11.p1k chr05 1244 517 5649 6338 C 728 86.81 1343 reject_low 15 ALIGNMENT 0 Y12-1d11.p1k chr05 516 62 6339 6338 C 455 0.00 1343 reject_low 15 ALIGNMENT 0 Y12-1d11.p1k chr07 62 343 1084352 1084351 F 282 0.00 1343 ambiguous_tel 5 ALIGNMENT 1020 Y12-1d11.q1k chr06 28 1156 1743 2871 F 1129 97.17 1357 reject_low 12 ALIGNMENT 0 Y12-1d11.p1k chr05 183 822 576866 576865 F 640 0.00 1343 reject_low 26 ALIGNMENT 0 Y12-1d11.p1k chr05 822 99 3 2 C 724 0.00 1343 reject_low 29 ALIGNMENT 0 Y12-1d11.p1k chr16 198 822 948062 948061 F 625 0.00 1343 reject_low 25 ALIGNMENT 44 Y12-1d11.p1k chr05 98 20 2 79 C 79 88.61 1343 reject_low 29 ALIGNMENT 534 Y12-1d11.p1k chr02 1244 339 4945 5850 C 906 88.63 1343 reject_low 16 ALIGNMENT 56 Y12-1d11.p1k chr02 114 20 2 95 C 95 89.47 1343 reject_low 28 ALIGNMENT 1014 Y12-1d11.q1k chr16 1156 28 944343 945471 C 1129 96.99 1357 reject_low 17 ALIGNMENT 1011 Y12-1d11.q1k chr12 28 1156 8241 9369 F 1129 96.90 1357 reject_low 19 ALIGNMENT 1014 Y12-1d11.q1k chr08 28 1156 2438 3566 F 1129 96.99 1357 reject_low 18 ALIGNMENT 1054 Y12-1d11.q1k chr12 1256 28 1074540 1075774 C 1229 95.77 1357 reject_low 10 ALIGNMENT 0 Y12-1d11.p1k chr04 62 247 1525355 1525354 F 186 0.00 1343 ambiguous_tel 3 ALIGNMENT 107 Y12-1d11.p1k chr05 20 182 576705 576866 F 163 91.41 1343 reject_low 26 ALIGNMENT 1086 Y12-1d12.q1k chr12 1348 36 464773 466087 C 1313 95.20 1366 accept 0,1 ALIGNMENT 937 Y12-1d12.p1k chr12 25 1058 460845 461893 F 1034 97.58 1342 accept 1 ALIGNMENT 937 Y12-1d12.p1k chr12 25 1058 451708 452756 F 1034 97.58 1342 accept 0 ALIGNMENT 753 Y12-1d12.p1k chr12 102 888 489754 490539 F 787 98.86 1342 reject_low 3 ALIGNMENT 0 Y12-1d12.p1k chr12 62 101 489754 489753 F 40 0.00 1342 reject_low 3 ALIGNMENT 1068 Y12-1d12.q1k chr12 1284 36 455706 456950 C 1249 96.00 1366 reject_low 2 ALIGNMENT 0 Y12-1d14.p1k chr15 883 862 427914 427913 C 22 0.00 1414 reject_low 1 ALIGNMENT 0 Y12-1d14.p1k chr15 883 863 427946 427945 C 21 0.00 1414 reject_low 4 ALIGNMENT 0 Y12-1d14.p1k chr08 742 62 365472 365471 C 681 0.00 1414 reject_low 2 ALIGNMENT 0 Y12-1d14.p1k chr04 808 62 834045 834044 C 747 0.00 1414 reject_low 10 ALIGNMENT 0 Y12-1d14.p1k chr13 62 796 248103 248102 F 735 0.00 1414 reject_low 9 ALIGNMENT 39 Y12-1d14.p1k chr11 849 758 576114 576205 C 92 82.61 1414 reject_low 3 ALIGNMENT 0 Y12-1d14.p1k chr13 863 883 248168 248167 F 21 0.00 1414 reject_low 9 ALIGNMENT 23 Y12-1d14.p1k chr09 834 861 382890 382917 F 28 96.43 1414 reject_low 13 ALIGNMENT 0 Y12-1d14.p1k chr07 62 802 70163 70162 F 741 0.00 1414 reject_low 7 ALIGNMENT 0 Y12-1d14.p1k chr04 883 853 834002 834001 C 31 0.00 1414 reject_low 10 ALIGNMENT 0 Y12-1d14.p1k chr09 829 883 382923 382922 F 55 0.00 1414 reject_low 14 ALIGNMENT 0 Y12-1d14.p1k chr15 742 62 428032 428031 C 681 0.00 1414 reject_low 1 ALIGNMENT 0 Y12-1d14.p1k chr08 883 862 365423 365422 C 22 0.00 1414 reject_low 8 ALIGNMENT 21 Y12-1d14.p1k chr15 855 828 302263 302290 C 28 92.86 1414 reject_low 16 ALIGNMENT 0 Y12-1d14.p1k chr15 883 856 428019 428018 C 28 0.00 1414 reject_low 12 ALIGNMENT 0 Y12-1d14.p1k chr11 757 62 576206 576205 C 696 0.00 1414 reject_low 3 ALIGNMENT 0 Y12-1d14.p1k chr16 808 62 187380 187379 C 747 0.00 1414 reject_low 11 ALIGNMENT 0 Y12-1d14.p1k chr12 840 883 281402 281401 F 44 0.00 1414 reject_low 15 ALIGNMENT 0 Y12-1d14.p1k chr08 795 62 365488 365487 C 734 0.00 1414 reject_low 8 ALIGNMENT 917 Y12-1d14.p1k chr07 1143 17 112649 113758 C 1127 96.01 1414 accept 0 ALIGNMENT 0 Y12-1d14.p1k chr15 802 62 428005 428004 C 741 0.00 1414 reject_low 4 ALIGNMENT 0 Y12-1d14.p1k chr16 883 859 187331 187330 C 25 0.00 1414 reject_low 11 ALIGNMENT 0 Y12-1d14.p1k chr08 883 855 365361 365360 C 29 0.00 1414 reject_low 2 ALIGNMENT 29 Y12-1d14.p1k chr08 861 796 365422 365487 C 66 83.33 1414 reject_low 8 ALIGNMENT 0 Y12-1d14.p1k chr09 62 833 382890 382889 F 772 0.00 1414 reject_low 13 ALIGNMENT 0 Y12-1d14.p1k chr09 862 883 382917 382916 F 22 0.00 1414 reject_low 13 ALIGNMENT 37 Y12-1d14.p1k chr08 862 802 365385 365445 C 61 88.52 1414 reject_low 5 ALIGNMENT 27 Y12-1d14.p1k chr15 855 818 428018 428055 C 38 92.11 1414 reject_low 12 ALIGNMENT 0 Y12-1d14.p1k chr15 827 62 302291 302290 C 766 0.00 1414 reject_low 16 ALIGNMENT 0 Y12-1d14.p1k chr09 62 801 382897 382896 F 740 0.00 1414 reject_low 14 ALIGNMENT 0 Y12-1d14.p1k chr08 805 62 252979 252978 C 744 0.00 1414 reject_low 6 ALIGNMENT 976 Y12-1d14.q1k chr07 32 1190 109731 110878 F 1159 96.29 1363 accept 0 ALIGNMENT 36 Y12-1d14.p1k chr08 862 806 252922 252978 C 57 89.47 1414 reject_low 6 ALIGNMENT 57 Y12-1d14.p1k chr15 861 743 427913 428031 C 119 84.03 1414 reject_low 1 ALIGNMENT 26 Y12-1d14.p1k chr13 797 862 248103 248168 F 66 81.82 1414 reject_low 9 ALIGNMENT 23 Y12-1d14.p1k chr12 816 839 281379 281402 F 24 100.00 1414 reject_low 15 ALIGNMENT 35 Y12-1d14.p1k chr07 803 861 70163 70221 F 59 88.14 1414 reject_low 7 ALIGNMENT 0 Y12-1d14.p1k chr12 62 815 281379 281378 F 754 0.00 1414 reject_low 15 ALIGNMENT 0 Y12-1d14.p1k chr11 883 850 576115 576114 C 34 0.00 1414 reject_low 3 ALIGNMENT 27 Y12-1d14.p1k chr04 852 809 834001 834044 C 44 88.64 1414 reject_low 10 ALIGNMENT 20 Y12-1d14.p1k chr09 802 828 382897 382923 F 27 92.59 1414 reject_low 14 ALIGNMENT 0 Y12-1d14.p1k chr07 862 883 70221 70220 F 22 0.00 1414 reject_low 7 ALIGNMENT 0 Y12-1d14.p1k chr15 883 856 302264 302263 C 28 0.00 1414 reject_low 16 ALIGNMENT 0 Y12-1d14.p1k chr08 801 62 365446 365445 C 740 0.00 1414 reject_low 5 ALIGNMENT 26 Y12-1d14.p1k chr16 858 809 187330 187379 C 50 86.00 1414 reject_low 11 ALIGNMENT 0 Y12-1d14.p1k chr08 883 863 252923 252922 C 21 0.00 1414 reject_low 6 ALIGNMENT 42 Y12-1d14.p1k chr08 854 743 365360 365471 C 112 80.36 1414 reject_low 2 ALIGNMENT 39 Y12-1d14.p1k chr15 862 803 427945 428004 C 60 90.00 1414 reject_low 4 ALIGNMENT 0 Y12-1d14.p1k chr08 883 863 365386 365385 C 21 0.00 1414 reject_low 5 ALIGNMENT 0 Y12-1d14.p1k chr15 817 62 428056 428055 C 756 0.00 1414 reject_low 12 ALIGNMENT 45 Y12-1d15.q1k chr08 621 763 91952 92095 F 143 80.42 1263 reject_low 24 ALIGNMENT 355 Y12-1d15.q1k chr10 615 244 203319 203690 C 372 100.00 1263 reject_low 25 ALIGNMENT 0 Y12-1d15.q1k chr08 899 616 91388 91387 C 284 0.00 1263 reject_low 8 ALIGNMENT 0 Y12-1d15.q1k chr07 899 764 931692 931691 C 136 0.00 1263 reject_low 27 ALIGNMENT 343 Y12-1d15.q1k chr14 615 245 561608 561978 C 371 98.92 1263 reject_low 9 ALIGNMENT 34 Y12-1d15.q1k chr12 984 1076 734913 735017 F 93 84.95 1263 reject_bad_break 0 ALIGNMENT 0 Y12-1d15.q1k chr02 62 243 643482 643481 F 182 0.00 1263 reject_low 11 ALIGNMENT 0 Y12-1d15.q1k chr07 62 620 111366 111365 F 559 0.00 1263 reject_low 28 ALIGNMENT 0 Y12-1d15.q1k chr13 899 636 503750 503749 C 264 0.00 1263 reject_low 5 ALIGNMENT 94 Y12-1d15.q1k chr08 755 616 133680 133820 C 140 91.43 1263 reject_low 19 ALIGNMENT 34 Y12-1d15.q1k chr04 643 713 437575 437645 F 71 84.51 1263 reject_low 26 ALIGNMENT 0 Y12-1d15.q1k chr05 616 899 354726 354725 F 284 0.00 1263 reject_low 13 ALIGNMENT 0 Y12-1d15.q1k chr14 244 62 561979 561978 C 183 0.00 1263 reject_low 9 ALIGNMENT 358 Y12-1d15.q1k chr13 635 244 503749 504141 C 392 98.72 1263 reject_low 5 ALIGNMENT 331 Y12-1d15.q1k chr05 245 615 354356 354726 F 371 97.84 1263 reject_low 13 ALIGNMENT 0 Y12-1d15.q1k chr03 764 899 143077 143076 F 136 0.00 1263 reject_low 21 ALIGNMENT 77 Y12-1d15.q1k chr09 893 975 210661 210743 F 83 97.59 1263 reject_low 4 ALIGNMENT 0 Y12-1d15.q1k chr08 62 620 116603 116602 F 559 0.00 1263 reject_low 18 ALIGNMENT 355 Y12-1d15.q1k chr09 245 615 196650 197020 F 371 100.00 1263 reject_low 22 ALIGNMENT 265 Y12-1d15.q1k chr15 615 325 703773 704063 C 291 98.28 1263 reject_low 17 ALIGNMENT 334 Y12-1d15.q1k chr14 245 615 632121 632491 F 371 98.11 1263 reject_low 12 ALIGNMENT 0 Y12-1d15.q1k chr08 764 899 92095 92094 F 136 0.00 1263 reject_low 24 ALIGNMENT 0 Y12-1d15.q1k chr07 616 899 931543 931542 F 284 0.00 1263 reject_low 16 ALIGNMENT 0 Y12-1d15.q1k chr05 62 244 354356 354355 F 183 0.00 1263 reject_low 13 ALIGNMENT 0 Y12-1d15.q1k chr03 62 620 142933 142932 F 559 0.00 1263 reject_low 21 ALIGNMENT 23 Y12-1d15.q1k chr07 621 675 111366 111420 F 55 83.64 1263 reject_low 28 ALIGNMENT 0 Y12-1d15.q1k chr13 62 244 808536 808535 F 183 0.00 1263 reject_low 14 ALIGNMENT 20 Y12-1d15.q1k chr14 621 648 561518 561545 F 28 92.86 1263 reject_low 29 ALIGNMENT 0 Y12-1d15.q1k chr04 62 642 437575 437574 F 581 0.00 1263 reject_low 26 ALIGNMENT 0 Y12-1d15.q1k chr12 984 983 734896 734912 F 0 0.00 1263 reject_bad_break 0 ALIGNMENT 0 Y12-1d15.q1k chr03 62 620 124318 124317 F 559 0.00 1263 reject_low 20 ALIGNMENT 0 Y12-1d15.q1k chr07 244 62 111230 111229 C 183 0.00 1263 reject_low 10 ALIGNMENT 0 Y12-1d15.q1k chr14 62 620 561518 561517 F 559 0.00 1263 reject_low 29 ALIGNMENT 0 Y12-1d15.q1k chr04 244 62 437516 437515 C 183 0.00 1263 reject_low 15 ALIGNMENT 0 Y12-1d15.q1k chr14 899 616 96452 96451 C 284 0.00 1263 reject_low 23 ALIGNMENT 0 Y12-1d15.q1k chr14 62 244 632121 632120 F 183 0.00 1263 reject_low 12 ALIGNMENT 0 Y12-1d15.q1k chr02 616 899 643853 643852 F 284 0.00 1263 reject_low 11 ALIGNMENT 98 Y12-1d15.q1k chr03 621 763 142933 143077 F 143 92.31 1263 reject_low 21 ALIGNMENT 0 Y12-1d15.q1k chr04 899 616 437147 437146 C 284 0.00 1263 reject_low 15 ALIGNMENT 0 Y12-1d15.q1k chr03 764 899 124462 124461 F 136 0.00 1263 reject_low 20 ALIGNMENT 0 Y12-1d15.q1k chr13 243 62 504142 504141 C 182 0.00 1263 reject_low 5 ALIGNMENT 98 Y12-1d15.q1k chr03 621 763 124318 124462 F 143 92.31 1263 reject_low 20 ALIGNMENT 0 Y12-1d15.q1k chr09 62 892 210661 210660 F 831 0.00 1263 reject_low 4 ALIGNMENT 0 Y12-1d15.q1k chr08 768 899 116751 116750 F 132 0.00 1263 reject_low 18 ALIGNMENT 0 Y12-1d15.q1k chr13 616 899 808905 808904 F 284 0.00 1263 reject_low 14 ALIGNMENT 0 Y12-1d15.q1k chr14 899 616 561609 561608 C 284 0.00 1263 reject_low 9 ALIGNMENT 0 Y12-1d15.q1k chr02 616 899 36218 36217 F 284 0.00 1263 reject_low 6 ALIGNMENT 311 Y12-1d15.q1k chr04 615 245 437146 437515 C 371 96.23 1263 reject_low 15 ALIGNMENT 0 Y12-1d15.q1k chr10 899 764 197415 197414 C 136 0.00 1263 reject_low 3,25 ALIGNMENT 145 Y12-1d15.q1k chr14 615 457 96451 96609 C 159 98.11 1263 reject_low 23 ALIGNMENT 0 Y12-1d15.q1k chr16 616 899 437257 437256 F 284 0.00 1263 reject_low 7 ALIGNMENT 532 Y12-1d15.q1k chr16 32 615 442525 443109 F 584 98.46 1263 reject_low 2 ALIGNMENT 0 Y12-1d15.q1k chr15 324 62 704064 704063 C 263 0.00 1263 reject_low 17 ALIGNMENT 0 Y12-1d15.q1k chr08 62 620 91952 91951 F 559 0.00 1263 reject_low 24 ALIGNMENT 535 Y12-1d15.q1k chr08 615 32 85535 86119 C 584 98.63 1263 reject_low 1 ALIGNMENT 0 Y12-1d15.q1k chr07 899 616 110860 110859 C 284 0.00 1263 reject_low 10 ALIGNMENT 326 Y12-1d15.q1k chr13 245 615 808536 808905 F 371 97.57 1263 reject_low 14 ALIGNMENT 0 Y12-1d15.q1k chr07 676 899 111420 111419 F 224 0.00 1263 reject_low 28 ALIGNMENT 1046 Y12-1d15.p1k chr12 1210 27 737610 738804 C 1184 96.79 1339 reject_bad_break 0 ALIGNMENT 0 Y12-1d15.q1k chr09 616 620 197021 197341 F 5 0.00 1263 reject_low 22 ALIGNMENT 355 Y12-1d15.q1k chr02 245 615 35848 36218 F 371 100.00 1263 reject_low 6 ALIGNMENT 0 Y12-1d15.q1k chr10 714 616 197464 203318 C 99 0.00 1263 reject_low 25 ALIGNMENT 308 Y12-1d15.q1k chr07 245 615 931174 931543 F 371 95.96 1263 reject_low 16 ALIGNMENT 0 Y12-1d15.q1k chr04 714 899 437645 437644 F 186 0.00 1263 reject_low 26 ALIGNMENT 0 Y12-1d15.q1k chr07 62 244 931174 931173 F 183 0.00 1263 reject_low 16 ALIGNMENT 102 Y12-1d15.q1k chr08 621 767 116603 116751 F 147 92.52 1263 reject_low 18 ALIGNMENT 343 Y12-1d15.q1k chr16 244 615 436886 437257 F 372 98.92 1263 reject_low 7 ALIGNMENT 284 Y12-1d15.q1k chr12 616 983 734525 734895 F 368 93.21 1263 reject_bad_break 0 ALIGNMENT 0 Y12-1d15.q1k chr08 615 62 133821 133820 C 554 0.00 1263 reject_low 19 ALIGNMENT 0 Y12-1d15.q1k chr02 62 244 35848 35847 F 183 0.00 1263 reject_low 6 ALIGNMENT 0 Y12-1d15.q1k chr10 714 616 197464 197463 C 99 0.00 1263 reject_low 3 ALIGNMENT 27 Y12-1d15.q1k chr07 763 722 931691 931733 C 42 92.86 1263 reject_low 27 ALIGNMENT 0 Y12-1d15.q1k chr07 721 62 931734 931733 C 660 0.00 1263 reject_low 27 ALIGNMENT 343 Y12-1d15.q1k chr08 615 245 91387 91757 C 371 98.92 1263 reject_low 8 ALIGNMENT 0 Y12-1d15.q1k chr08 244 62 91758 91757 C 183 0.00 1263 reject_low 8 ALIGNMENT 0 Y12-1d15.q1k chr16 616 899 443109 443108 F 284 0.00 1263 reject_low 2 ALIGNMENT 0 Y12-1d15.q1k chr14 649 899 561545 561544 F 251 0.00 1263 reject_low 29 ALIGNMENT 0 Y12-1d15.q1k chr12 62 615 734525 734524 F 554 0.00 1263 reject_bad_break 0 ALIGNMENT 28 Y12-1d15.q1k chr10 763 715 197414 197463 C 49 89.80 1263 reject_low 3,25 ALIGNMENT 0 Y12-1d15.q1k chr09 765 899 197486 197485 F 135 0.00 1263 reject_low 22 ALIGNMENT 0 Y12-1d15.q1k chr10 243 62 203691 203690 C 182 0.00 1263 reject_low 25 ALIGNMENT 337 Y12-1d15.q1k chr02 244 615 643482 643853 F 372 98.39 1263 reject_low 11 ALIGNMENT 0 Y12-1d15.q1k chr14 456 62 96610 96609 C 395 0.00 1263 reject_low 23 ALIGNMENT 74 Y12-1d15.q1k chr09 621 764 197342 197486 F 144 86.11 1263 reject_low 22 ALIGNMENT 0 Y12-1d15.q1k chr14 616 899 632491 632490 F 284 0.00 1263 reject_low 12 ALIGNMENT 0 Y12-1d15.q1k chr15 899 616 703774 703773 C 284 0.00 1263 reject_low 17 ALIGNMENT 0 Y12-1d15.q1k chr16 62 243 436886 436885 F 182 0.00 1263 reject_low 7 ALIGNMENT 0 Y12-1d15.q1k chr09 62 244 196650 196649 F 183 0.00 1263 reject_low 22 ALIGNMENT 0 Y12-1d15.q1k chr08 899 756 133681 133680 C 144 0.00 1263 reject_low 19 ALIGNMENT 550 Y12-1d15.q1k chr10 615 32 197464 198048 C 584 99.49 1263 reject_low 3 ALIGNMENT 340 Y12-1d15.q1k chr07 615 245 110859 111229 C 371 98.65 1263 reject_low 10 ALIGNMENT 0 Y12-1d15.q1k chr08 899 616 85536 85535 C 284 0.00 1263 reject_low 1 ALIGNMENT 883 Y12-1d17.q1k chr12 82 1204 460209 461342 F 1123 94.48 1351 reject_bad_break 0 ALIGNMENT 617 Y12-1d17.q1k chr12 417 1204 451419 452205 F 788 94.42 1351 reject_low 1 ALIGNMENT 1049 Y12-1d17.p1k chr12 1237 29 455979 457199 C 1209 96.20 1333 reject_low 1 ALIGNMENT 43 Y12-1d17.q1k chr12 35 81 460146 460192 F 47 97.87 1351 reject_bad_break 0 ALIGNMENT 1049 Y12-1d17.p1k chr12 1237 29 465116 466336 C 1209 96.20 1333 reject_bad_break 0 ALIGNMENT 290 Y12-1d17.q1k chr12 790 1204 489754 490173 F 415 91.57 1351 reject_low 2 ALIGNMENT 0 Y12-1d17.q1k chr12 62 789 489754 489753 F 728 0.00 1351 reject_low 2 ALIGNMENT 0 Y12-1d17.q1k chr12 82 81 460193 460208 F 0 0.00 1351 reject_bad_break 0 ALIGNMENT 0 Y12-1d17.q1k chr12 62 416 451419 451418 F 355 0.00 1351 reject_low 1 ALIGNMENT 1034 Y12-1d18.p1k chr02 1267 31 739675 740921 C 1237 95.55 1420 accept 0 ALIGNMENT 968 Y12-1d18.q1k chr02 34 1176 737653 738807 F 1143 95.80 1307 accept 0 ALIGNMENT 991 Y12-1d20.q1k chr11 1164 31 554023 555173 C 1134 96.30 1308 accept 0 ALIGNMENT 526 Y12-1d20.q1k chr10 31 577 154065 154613 F 547 99.09 1308 reject_low 1 ALIGNMENT 982 Y12-1d20.p1k chr11 18 1230 550504 551736 F 1213 95.05 1420 accept 0 ALIGNMENT 0 Y12-1d20.q1k chr10 578 971 154613 154612 F 394 0.00 1308 reject_low 1 ALIGNMENT 1037 Y12-1d21.q1k chr16 1253 32 542542 543758 C 1222 96.56 1273 accept 0 ALIGNMENT 984 Y12-1d21.p1k chr16 20 1249 539287 540536 F 1230 95.04 1257 accept 0 ALIGNMENT 1020 Y12-1d22.q1k chr04 36 1200 1337223 1338396 F 1165 96.57 1278 accept 0 ALIGNMENT 891 Y12-1d22.p1k chr04 1185 40 1340481 1341637 C 1146 94.24 1353 accept 0 ALIGNMENT 1054 Y12-1d24.p1k chr15 1242 24 831980 833199 C 1219 96.39 1328 accept 0 ALIGNMENT 786 Y12-1d24.q1k chr15 28 925 826847 827738 F 898 96.66 1359 accept 0 ALIGNMENT 954 Y12-1e01.p1k chr05 1112 16 172471 173577 C 1097 96.72 1351 accept 0 ALIGNMENT 934 Y12-1e01.q1k chr05 36 1107 167568 168650 F 1072 96.74 1294 accept 0 ALIGNMENT 881 Y12-1e02.p1k chr02 20 1032 802596 803604 F 1013 97.04 1459 accept 0 ALIGNMENT 0 Y12-1e02.p1k chr04 157 62 7717 7716 C 96 0.00 1459 reject_low 2 ALIGNMENT 0 Y12-1e02.p1k chr10 62 157 738000 737999 F 96 0.00 1459 reject_low 3 ALIGNMENT 1016 Y12-1e02.q1k chr02 1206 39 805976 807153 C 1168 96.66 1327 accept 0 ALIGNMENT 180 Y12-1e02.p1k chr04 813 158 7062 7716 C 656 76.83 1459 reject_low 2 ALIGNMENT 1025 Y12-1e02.q1k chr07 1206 39 1077236 1078413 C 1168 96.92 1327 reject_low 1 ALIGNMENT 180 Y12-1e02.p1k chr10 158 813 738000 738654 F 656 76.83 1459 reject_low 3 ALIGNMENT 986 Y12-1e03.p1k chr15 1153 29 628925 630062 C 1125 96.62 1345 accept 0 ALIGNMENT 996 Y12-1e03.q1k chr15 37 1212 624273 625471 F 1176 95.75 1309 accept 0 ALIGNMENT 409 Y12-1e04.p1k chr11 1061 311 471942 472682 C 751 86.68 1446 accept 0 ALIGNMENT 463 Y12-1e04.q1k chr11 130 1051 468956 469871 F 922 84.49 1301 accept 0 ALIGNMENT 1044 Y12-1e05.q1k chr15 1270 38 898087 899324 C 1233 95.94 1356 accept 0 ALIGNMENT 819 Y12-1e05.p1k chr15 78 1100 895020 896044 F 1023 95.89 1371 accept 0 ALIGNMENT 948 Y12-1e07.p1k chr09 18 1158 211817 212977 F 1141 95.71 1356 accept 0 ALIGNMENT 881 Y12-1e07.q1k chr09 1095 34 216638 217699 C 1062 95.39 1334 accept 0 ALIGNMENT 1027 Y12-1e08.p1k chr08 1249 18 376051 377297 C 1232 95.21 1425 accept 0 ALIGNMENT 890 Y12-1e08.q1k chr08 34 1085 372053 373114 F 1052 95.91 1328 accept 0 ALIGNMENT 985 Y12-1e09.p1k chr07 1129 22 462243 463362 C 1108 97.74 1326 accept 0 ALIGNMENT 1049 Y12-1e09.q1k chr07 36 1178 457643 458795 F 1143 97.73 1298 accept 0 ALIGNMENT 1042 Y12-1e11.p1k chr06 1273 33 27614 28856 C 1241 95.41 1400 accept 0 ALIGNMENT 1069 Y12-1e11.q1k chr06 39 1276 22883 24129 F 1238 96.04 1357 accept 0 ALIGNMENT 996 Y12-1e12.p1k chr07 18 1182 359001 360170 F 1165 96.74 1396 accept 0 ALIGNMENT 984 Y12-1e12.q1k chr07 1160 37 363038 364172 C 1124 96.89 1333 accept 0 ALIGNMENT 1008 Y12-1e13.q1k chr15 1260 33 1001861 1003091 C 1228 95.44 1312 accept 0 ALIGNMENT 1019 Y12-1e13.p1k chr15 18 1200 998296 999490 F 1183 96.37 1362 accept 0 ALIGNMENT 973 Y12-1e14.p1k chr02 1136 20 169357 170482 C 1117 96.87 1339 accept 0 ALIGNMENT 911 Y12-1e14.q1k chr02 38 1124 165411 166505 F 1087 96.32 1298 accept 0 ALIGNMENT 1000 Y12-1e16.q1k chr12 1167 33 101085 102227 C 1135 96.83 1305 accept 0 ALIGNMENT 1019 Y12-1e16.p1k chr12 24 1261 97267 98504 F 1238 95.48 1388 accept 0 ALIGNMENT 0 Y12-1e16.p1k chr01 240 843 141433 141432 F 604 0.00 1388 reject_low 1 ALIGNMENT 147 Y12-1e16.p1k chr01 24 239 141216 141433 F 216 89.81 1388 reject_low 1 ALIGNMENT 985 Y12-1e17.p1k chr12 19 1203 493548 494748 F 1185 94.94 1339 accept 0 ALIGNMENT 966 Y12-1e17.q1k chr12 1180 38 496624 497780 C 1143 96.68 1289 accept 0 ALIGNMENT 1067 Y12-1e18.q1k chr02 36 1280 245799 247045 F 1245 95.74 1368 accept 0 ALIGNMENT 1014 Y12-1e18.p1k chr02 1174 20 250533 251705 C 1155 97.14 1350 accept 0 ALIGNMENT 690 Y12-1e19.q1k chr16 37 998 434638 435599 F 962 91.58 1353 accept_trans 0 ALIGNMENT 897 Y12-1e19.p1k chr16 1253 21 444394 445624 C 1233 92.62 1364 accept_trans 0 ALIGNMENT 913 Y12-1e20.q1k chr16 1126 35 37577 38685 C 1092 96.25 1299 accept 0 ALIGNMENT 892 Y12-1e20.p1k chr16 18 1104 33210 34325 F 1087 96.04 1307 accept 0 ALIGNMENT 993 Y12-1e22.p1k chr16 19 1198 813577 814748 F 1180 96.10 1295 accept 0 ALIGNMENT 1009 Y12-1e22.q1k chr16 1264 33 816998 818243 C 1232 95.29 1314 accept 0 ALIGNMENT 1017 Y12-1e23.p1k chr13 20 1201 850326 851512 F 1182 96.53 1262 accept 0 ALIGNMENT 0 Y12-1e23.p1k chr08 62 676 228327 228326 F 615 0.00 1262 reject_low 1 ALIGNMENT 0 Y12-1e23.p1k chr11 253 874 485461 485460 F 622 0.00 1262 reject_low 2 ALIGNMENT 20 Y12-1e23.p1k chr11 224 252 485433 485461 F 29 89.66 1262 reject_low 2 ALIGNMENT 1061 Y12-1e23.q1k chr13 1224 38 853784 854972 C 1187 97.14 1238 accept 0 ALIGNMENT 0 Y12-1e23.p1k chr08 781 874 228430 228429 F 94 0.00 1262 reject_low 1 ALIGNMENT 0 Y12-1e23.p1k chr11 62 223 485433 485432 F 162 0.00 1262 reject_low 2 ALIGNMENT 23 Y12-1e23.p1k chr08 677 780 228327 228430 F 104 75.00 1262 reject_low 1 ALIGNMENT 856 Y12-1f01.q1k chr10 37 1027 568907 569910 F 991 96.06 1267 accept 0 ALIGNMENT 1079 Y12-1f02.q1k chr12 1211 33 27373 28561 C 1179 97.79 1288 accept 0 ALIGNMENT 390 Y12-1f02.p1k chr12 40 849 22239 23050 F 810 83.83 1436 accept 0 ALIGNMENT 1036 Y12-1f03.p1k chr10 23 1282 382646 383918 F 1260 95.79 1397 accept 0 ALIGNMENT 1072 Y12-1f04.q1k chr08 1224 39 334619 335810 C 1186 97.13 1311 accept 0 ALIGNMENT 982 Y12-1f04.p1k chr08 24 1172 331700 332865 F 1149 96.08 1402 accept 0 ALIGNMENT 1032 Y12-1f05.q1k chr09 32 1205 401295 402478 F 1174 96.93 1356 accept 0 ALIGNMENT 1052 Y12-1f05.p1k chr09 1212 19 404433 405623 C 1194 96.65 1425 accept 0 ALIGNMENT 972 Y12-1f06.p1k chr16 1176 23 661720 662888 C 1154 96.01 1410 accept 0 ALIGNMENT 1039 Y12-1f06.q1k chr16 29 1257 658373 659600 F 1229 95.28 1410 accept 0 ALIGNMENT 1026 Y12-1f08.p1k chr10 1214 28 150292 151493 C 1187 96.88 1432 accept 0 ALIGNMENT 944 Y12-1f08.q1k chr10 38 1068 146485 147525 F 1031 97.67 1318 accept 0 ALIGNMENT 75 Y12-1f09.p1k chr06 1059 951 31622 31729 C 109 93.58 1419 reject_low 3 ALIGNMENT 992 Y12-1f09.p1k chr12 25 1305 458386 459662 F 1281 94.69 1419 accept 0 ALIGNMENT 0 Y12-1f09.p1k chr06 950 62 31730 31729 C 889 0.00 1419 reject_low 3 ALIGNMENT 983 Y12-1f09.p1k chr12 25 1245 467523 468733 F 1221 95.66 1419 reject_low 2 ALIGNMENT 1098 Y12-1f09.q1k chr12 1275 35 461551 462801 C 1241 96.54 1328 accept 0 ALIGNMENT 1098 Y12-1f09.q1k chr12 1275 35 452414 453664 C 1241 96.54 1328 reject_low 1 ALIGNMENT 919 Y12-1f10.p1k chr07 1042 18 1028609 1029648 C 1025 97.76 1338 accept 0 ALIGNMENT 990 Y12-1f10.q1k chr07 29 1242 1023458 1024688 F 1214 94.40 1320 accept 0 ALIGNMENT 919 Y12-1f11.p1k chr07 1173 17 324754 325909 C 1157 93.69 1399 accept 0 ALIGNMENT 956 Y12-1f11.q1k chr07 38 1181 322123 323282 F 1144 95.45 1344 accept 0 ALIGNMENT 0 Y12-1f12.q1k chr11 862 181 517096 517095 C 682 0.00 1301 reject_low 5 ALIGNMENT 125 Y12-1f12.q1k chr16 37 181 56646 56789 F 145 97.93 1301 reject_low 10 ALIGNMENT 0 Y12-1f12.q1k chr10 182 862 472715 472714 F 681 0.00 1301 reject_low 15 ALIGNMENT 130 Y12-1f12.q1k chr02 37 180 226813 226955 F 144 99.31 1301 reject_low 4 ALIGNMENT 0 Y12-1f12.q1k chr16 161 862 844725 844724 F 702 0.00 1301 reject_low 22 ALIGNMENT 0 Y12-1f12.q1k chr13 862 161 378305 378304 C 702 0.00 1301 reject_low 21 ALIGNMENT 125 Y12-1f12.q1k chr01 181 37 165826 165969 C 145 97.93 1301 reject_low 8 ALIGNMENT 0 Y12-1f12.q1k chr12 862 161 215102 215101 C 702 0.00 1301 reject_low 19 ALIGNMENT 124 Y12-1f12.q1k chr14 180 37 96610 96752 C 144 97.92 1301 reject_low 14 ALIGNMENT 124 Y12-1f12.q1k chr12 180 37 475975 476117 C 144 97.92 1301 reject_low 13 ALIGNMENT 108 Y12-1f12.q1k chr02 37 160 259765 259887 F 124 98.39 1301 reject_low 18 ALIGNMENT 0 Y12-1f12.q1k chr07 189 862 932030 932029 F 674 0.00 1301 reject_low 1 ALIGNMENT 997 Y12-1f12.p1k chr07 1193 30 664334 665510 C 1164 96.31 1440 accept 0 ALIGNMENT 118 Y12-1f12.q1k chr02 37 181 221229 221374 F 145 96.55 1301 reject_low 16 ALIGNMENT 124 Y12-1f12.q1k chr03 37 180 82893 83035 F 144 97.92 1301 reject_low 12 ALIGNMENT 127 Y12-1f12.q1k chr07 37 180 535404 535546 F 144 98.61 1301 reject_low 7 ALIGNMENT 0 Y12-1f12.q1k chr02 181 862 226955 226954 F 682 0.00 1301 reject_low 4 ALIGNMENT 737 Y12-1f12.q1k chr07 177 1102 661549 662489 F 926 94.71 1301 accept 0 ALIGNMENT 130 Y12-1f12.q1k chr13 180 37 357004 357146 C 144 99.31 1301 reject_low 6 ALIGNMENT 119 Y12-1f12.q1k chr07 37 188 931880 932030 F 152 95.39 1301 reject_low 1 ALIGNMENT 119 Y12-1f12.q1k chr10 37 181 472572 472715 F 145 96.55 1301 reject_low 15 ALIGNMENT 0 Y12-1f12.q1k chr14 862 181 96611 96610 C 682 0.00 1301 reject_low 14 ALIGNMENT 0 Y12-1f12.q1k chr10 181 862 483886 483885 F 682 0.00 1301 reject_low 17 ALIGNMENT 97 Y12-1f12.q1k chr14 45 181 519363 519498 F 137 92.70 1301 reject_low 23 ALIGNMENT 0 Y12-1f12.q1k chr07 62 176 661549 661548 F 115 0.00 1301 accept 0 ALIGNMENT 0 Y12-1f12.q1k chr01 862 181 160240 160239 C 682 0.00 1301 reject_low 11 ALIGNMENT 118 Y12-1f12.q1k chr10 37 180 483744 483886 F 144 96.53 1301 reject_low 17 ALIGNMENT 131 Y12-1f12.q1k chr13 181 37 362585 362728 C 145 99.31 1301 reject_low 3 ALIGNMENT 108 Y12-1f12.q1k chr13 160 37 378304 378426 C 124 98.39 1301 reject_low 21 ALIGNMENT 0 Y12-1f12.q1k chr16 862 185 850622 850621 C 678 0.00 1301 reject_low 2 ALIGNMENT 0 Y12-1f12.q1k chr12 862 181 475976 475975 C 682 0.00 1301 reject_low 13 ALIGNMENT 0 Y12-1f12.q1k chr14 182 862 519498 519497 F 681 0.00 1301 reject_low 23 ALIGNMENT 0 Y12-1f12.q1k chr13 862 161 372717 372716 C 702 0.00 1301 reject_low 20 ALIGNMENT 0 Y12-1f12.q1k chr07 181 862 535546 535545 F 682 0.00 1301 reject_low 7 ALIGNMENT 130 Y12-1f12.q1k chr11 180 37 517095 517237 C 144 99.31 1301 reject_low 5 ALIGNMENT 96 Y12-1f12.q1k chr14 45 180 524929 525063 F 136 92.65 1301 reject_low 24 ALIGNMENT 0 Y12-1f12.q1k chr03 862 181 83055 83054 C 682 0.00 1301 reject_low 25 ALIGNMENT 0 Y12-1f12.q1k chr12 862 182 481562 481561 C 681 0.00 1301 reject_low 9 ALIGNMENT 0 Y12-1f12.q1k chr16 182 862 56789 56788 F 681 0.00 1301 reject_low 10 ALIGNMENT 0 Y12-1f12.q1k chr02 161 862 259887 259886 F 702 0.00 1301 reject_low 18 ALIGNMENT 108 Y12-1f12.q1k chr12 160 37 215101 215223 C 124 98.39 1301 reject_low 19 ALIGNMENT 108 Y12-1f12.q1k chr16 37 160 844603 844725 F 124 98.39 1301 reject_low 22 ALIGNMENT 91 Y12-1f12.q1k chr03 180 39 83054 83195 C 142 89.44 1301 reject_low 25 ALIGNMENT 108 Y12-1f12.q1k chr13 160 37 372716 372838 C 124 98.39 1301 reject_low 20 ALIGNMENT 0 Y12-1f12.q1k chr13 862 182 362586 362585 C 681 0.00 1301 reject_low 3 ALIGNMENT 0 Y12-1f12.q1k chr13 862 181 357005 357004 C 682 0.00 1301 reject_low 6 ALIGNMENT 125 Y12-1f12.q1k chr12 181 37 481561 481704 C 145 97.93 1301 reject_low 9 ALIGNMENT 124 Y12-1f12.q1k chr01 180 37 160239 160381 C 144 97.92 1301 reject_low 11 ALIGNMENT 127 Y12-1f12.q1k chr16 184 37 850621 850767 C 148 97.97 1301 reject_low 2 ALIGNMENT 0 Y12-1f12.q1k chr03 181 862 83035 83034 F 682 0.00 1301 reject_low 12 ALIGNMENT 0 Y12-1f12.q1k chr14 181 862 525063 525062 F 682 0.00 1301 reject_low 24 ALIGNMENT 0 Y12-1f12.q1k chr01 862 182 165827 165826 C 681 0.00 1301 reject_low 8 ALIGNMENT 0 Y12-1f12.q1k chr02 182 862 221374 221373 F 681 0.00 1301 reject_low 16 ALIGNMENT 1037 Y12-1f13.q1k chr13 34 1245 733116 734321 F 1212 97.19 1325 accept 0 ALIGNMENT 958 Y12-1f13.p1k chr13 1169 21 736572 737732 C 1149 96.26 1348 accept 0 ALIGNMENT 918 Y12-1f14.p1k chr04 1072 21 331288 332356 C 1052 97.15 1345 accept 0 ALIGNMENT 970 Y12-1f14.q1k chr04 37 1160 327763 328903 F 1124 96.98 1277 accept 0 ALIGNMENT 886 Y12-1f15.p1k chr15 1130 20 693369 694465 C 1111 95.32 1392 accept 0 ALIGNMENT 908 Y12-1f15.q1k chr15 34 1107 689687 690753 F 1074 96.09 1405 accept 0 ALIGNMENT 974 Y12-1f16.p1k chr09 28 1139 86148 87272 F 1112 96.76 1381 accept 0 ALIGNMENT 1004 Y12-1f16.q1k chr09 1276 36 89311 90567 C 1241 95.41 1335 accept 0 ALIGNMENT 975 Y12-1f17.q1k chr02 27 1084 630274 631341 F 1058 98.30 1301 accept 0 ALIGNMENT 891 Y12-1f17.p1k chr02 1066 22 634943 636004 C 1045 96.17 1318 accept 0 ALIGNMENT 969 Y12-1f18.p1k chr04 1135 20 160536 161660 C 1116 96.86 1385 accept 0 ALIGNMENT 952 Y12-1f18.q1k chr04 39 1114 157053 158136 F 1076 97.03 1331 accept 0 ALIGNMENT 1019 Y12-1f19.q1k chr16 37 1207 434638 435815 F 1171 96.58 1350 accept_trans 0 ALIGNMENT 962 Y12-1f19.p1k chr16 1098 22 444534 445624 C 1077 97.40 1304 accept_trans 0 ALIGNMENT 877 Y12-1f20.p1k chr16 974 17 369393 370363 C 958 97.91 1299 accept 0 ALIGNMENT 1033 Y12-1f20.q1k chr16 29 1274 366082 367338 F 1246 95.59 1349 accept 0 ALIGNMENT 1002 Y12-1f21.q1k chr15 33 1237 960819 962034 F 1205 95.68 1276 accept 0 ALIGNMENT 983 Y12-1f21.p1k chr15 1147 22 965276 966398 C 1126 96.98 1327 accept 0 ALIGNMENT 1018 Y12-1f22.p1k chr13 1215 27 53675 54870 C 1189 96.30 1345 accept 0 ALIGNMENT 965 Y12-1f22.q1k chr13 39 1146 50928 52027 F 1108 96.84 1325 accept 0 ALIGNMENT 958 Y12-1f23.q1k chr07 37 1139 795389 796492 F 1103 96.74 1256 accept 0 ALIGNMENT 868 Y12-1f23.p1k chr07 932 20 798398 799310 C 913 98.14 1316 accept 0 ALIGNMENT 1018 Y12-1f24.q1k chr12 34 1222 528690 529873 F 1189 96.05 1253 accept 0 ALIGNMENT 0 Y12-1g01.p1k chr12 62 446 281379 281378 F 385 0.00 1357 reject_low 3 ALIGNMENT 22 Y12-1g01.p1k chr11 468 446 576168 576190 C 23 100.00 1357 reject_low 2 ALIGNMENT 978 Y12-1g01.p1k chr12 1158 16 279239 280373 C 1143 96.33 1357 accept 0 ALIGNMENT 0 Y12-1g01.p1k chr11 788 469 576169 576168 C 320 0.00 1357 reject_low 2 ALIGNMENT 20 Y12-1g01.p1k chr15 477 449 427904 427932 C 29 93.10 1357 reject_low 1 ALIGNMENT 21 Y12-1g01.p1k chr12 447 468 281379 281400 F 22 100.00 1357 reject_low 3 ALIGNMENT 0 Y12-1g01.p1k chr12 469 788 281400 281399 F 320 0.00 1357 reject_low 3 ALIGNMENT 0 Y12-1g01.p1k chr11 445 62 576191 576190 C 384 0.00 1357 reject_low 2 ALIGNMENT 0 Y12-1g01.p1k chr15 788 478 427905 427904 C 311 0.00 1357 reject_low 1 ALIGNMENT 0 Y12-1g01.p1k chr15 448 62 427933 427932 C 387 0.00 1357 reject_low 1 ALIGNMENT 1016 Y12-1g01.q1k chr12 28 1172 276822 277972 F 1145 97.73 1282 accept 0 ALIGNMENT 928 Y12-1g02.q1k chr11 1142 37 472337 473459 C 1106 95.75 1305 accept 0 ALIGNMENT 969 Y12-1g02.p1k chr11 24 1193 469618 470806 F 1170 96.41 1320 accept 0 ALIGNMENT 903 Y12-1g03.q1k chr08 30 1091 412051 413126 F 1062 96.33 1271 accept 0 ALIGNMENT 975 Y12-1g03.p1k chr08 1205 20 415959 417157 C 1186 95.19 1363 accept 0 ALIGNMENT 0 Y12-1g04.p1k chr12 375 62 976054 976053 C 314 0.00 1384 reject_low 4 ALIGNMENT 76 Y12-1g04.p1k chr14 377 465 632601 632689 F 89 95.51 1384 reject_low 3 ALIGNMENT 0 Y12-1g04.p1k chr12 836 461 975970 975969 C 376 0.00 1384 reject_low 4 ALIGNMENT 82 Y12-1g04.p1k chr14 376 460 102715 102799 F 85 98.82 1384 reject_low 5 ALIGNMENT 81 Y12-1g04.p1k chr11 374 467 74626 74719 F 94 95.74 1384 reject_low 1 ALIGNMENT 76 Y12-1g04.p1k chr16 377 461 810672 810754 F 85 97.65 1384 reject_low 7 ALIGNMENT 0 Y12-1g04.p1k chr15 459 836 228410 228409 F 378 0.00 1384 reject_low 2 ALIGNMENT 0 Y12-1g04.p1k chr14 461 836 102799 102798 F 376 0.00 1384 reject_low 5 ALIGNMENT 0 Y12-1g04.p1k chr11 468 836 74719 74718 F 369 0.00 1384 reject_low 1 ALIGNMENT 77 Y12-1g04.p1k chr07 376 452 731141 731217 F 77 100.00 1384 reject_low 8 ALIGNMENT 0 Y12-1g04.p1k chr06 836 453 137480 137479 C 384 0.00 1384 reject_low 9 ALIGNMENT 0 Y12-1g04.p1k chr14 466 836 632689 632688 F 371 0.00 1384 reject_low 3 ALIGNMENT 82 Y12-1g04.p1k chr12 460 376 975969 976053 C 85 98.82 1384 reject_low 4 ALIGNMENT 0 Y12-1g04.p1k chr06 376 62 137555 137554 C 315 0.00 1384 reject_low 9 ALIGNMENT 0 Y12-1g04.p1k chr15 62 373 228326 228325 F 312 0.00 1384 reject_low 2 ALIGNMENT 82 Y12-1g04.p1k chr15 374 458 228326 228410 F 85 98.82 1384 reject_low 2 ALIGNMENT 0 Y12-1g04.p1k chr07 453 836 731217 731216 F 384 0.00 1384 reject_low 8 ALIGNMENT 0 Y12-1g04.p1k chr16 462 836 810754 810753 F 375 0.00 1384 reject_low 7 ALIGNMENT 0 Y12-1g04.p1k chr11 62 373 74626 74625 F 312 0.00 1384 reject_low 1 ALIGNMENT 0 Y12-1g04.p1k chr16 62 376 810672 810671 F 315 0.00 1384 reject_low 7 ALIGNMENT 0 Y12-1g04.p1k chr14 62 376 632601 632600 F 315 0.00 1384 reject_low 3 ALIGNMENT 83 Y12-1g04.p1k chr03 377 459 127713 127795 F 83 100.00 1384 reject_low 6 ALIGNMENT 987 Y12-1g04.q1k chr15 1208 40 488989 490172 C 1169 96.15 1343 accept 0 ALIGNMENT 905 Y12-1g04.p1k chr15 21 1109 487082 488168 F 1089 95.68 1384 accept 0 ALIGNMENT 0 Y12-1g04.p1k chr14 62 375 102715 102714 F 314 0.00 1384 reject_low 5 ALIGNMENT 0 Y12-1g04.p1k chr07 62 375 731141 731140 F 314 0.00 1384 reject_low 8 ALIGNMENT 76 Y12-1g04.p1k chr06 452 377 137479 137554 C 76 100.00 1384 reject_low 9 ALIGNMENT 0 Y12-1g04.p1k chr03 62 376 127713 127712 F 315 0.00 1384 reject_low 6 ALIGNMENT 0 Y12-1g04.p1k chr03 460 836 127795 127794 F 377 0.00 1384 reject_low 6 ALIGNMENT 705 Y12-1g05.p1k chr14 25 1093 536094 537172 F 1069 89.90 1361 accept 0 ALIGNMENT 907 Y12-1g05.q1k chr14 1319 34 540723 542000 C 1286 91.60 1373 accept 0 ALIGNMENT 938 Y12-1g06.q1k chr16 1191 36 565448 566615 C 1156 95.07 1337 accept_chi 1 ALIGNMENT 984 Y12-1g06.p1k chr10 19 1162 148866 150033 F 1144 96.68 1350 accept_chi 0 ALIGNMENT 1002 Y12-1g08.p1k chr12 1134 20 564150 565276 C 1115 97.76 1383 accept 0 ALIGNMENT 1018 Y12-1g08.q1k chr12 32 1216 559412 560611 F 1185 96.12 1353 accept 0 ALIGNMENT 964 Y12-1g09.p1k chr15 22 1124 478287 479396 F 1103 96.65 1346 accept 0 ALIGNMENT 1000 Y12-1g09.q1k chr15 1181 38 481328 482488 C 1144 96.50 1287 accept 0 ALIGNMENT 1011 Y12-1g10.p1k chr04 1198 24 244468 245649 C 1175 96.60 1370 accept 0 ALIGNMENT 868 Y12-1g10.q1k chr04 36 1069 240283 241337 F 1034 95.45 1277 accept 0 ALIGNMENT 0 Y12-1g11.p1k chr15 798 62 594760 594759 C 737 0.00 1360 reject_low 26 ALIGNMENT 172 Y12-1g11.p1k chr07 735 947 823000 823212 F 213 95.77 1360 reject_low 9 ALIGNMENT 172 Y12-1g11.p1k chr15 947 735 600502 600714 C 213 95.77 1360 reject_low 11 ALIGNMENT 0 Y12-1g11.p1k chr14 714 62 525064 525063 C 653 0.00 1360 reject_low 24 ALIGNMENT 104 Y12-1g11.p1k chr14 946 715 519263 519497 C 232 84.05 1360 reject_low 23 ALIGNMENT 0 Y12-1g11.p1k chr11 62 714 517095 517094 F 653 0.00 1360 reject_low 2 ALIGNMENT 0 Y12-1g11.p1k chr15 734 62 595133 595132 C 673 0.00 1360 reject_low 10 ALIGNMENT 169 Y12-1g11.p1k chr08 735 947 543630 543842 F 213 95.31 1360 reject_low 15 ALIGNMENT 169 Y12-1g11.p1k chr13 947 735 184269 184481 C 213 95.31 1360 reject_low 16 ALIGNMENT 0 Y12-1g11.p1k chr14 62 714 96610 96609 F 653 0.00 1360 reject_low 5 ALIGNMENT 0 Y12-1g11.p1k chr02 734 62 259888 259887 C 673 0.00 1360 reject_low 13 ALIGNMENT 0 Y12-1g11.p1k chr01 62 714 165827 165826 F 653 0.00 1360 reject_low 19 ALIGNMENT 178 Y12-1g11.p1k chr07 947 715 931790 932022 C 233 93.99 1360 reject_low 8 ALIGNMENT 0 Y12-1g11.p1k chr10 714 62 472715 472714 C 653 0.00 1360 reject_low 17 ALIGNMENT 0 Y12-1g11.p1k chr15 734 62 600715 600714 C 673 0.00 1360 reject_low 11 ALIGNMENT 0 Y12-1g11.p1k chr02 713 62 226957 226956 C 652 0.00 1360 reject_low 1 ALIGNMENT 0 Y12-1g11.p1k chr13 734 62 184482 184481 C 673 0.00 1360 reject_low 16 ALIGNMENT 187 Y12-1g11.p1k chr14 715 947 96610 96842 F 233 95.28 1360 reject_low 5 ALIGNMENT 0 Y12-1g11.p1k chr13 940 715 573262 573277 C 226 0.00 1360 accept 0 ALIGNMENT 664 Y12-1g11.p1k chr13 714 23 573278 573969 C 692 99.86 1360 accept 0 ALIGNMENT 187 Y12-1g11.p1k chr16 947 715 560577 560809 C 233 95.28 1360 reject_low 7 ALIGNMENT 191 Y12-1g11.p1k chr02 947 714 226723 226956 C 234 95.73 1360 reject_low 1 ALIGNMENT 0 Y12-1g11.p1k chr13 62 714 362586 362585 F 653 0.00 1360 reject_low 4 ALIGNMENT 0 Y12-1g11.p1k chr07 714 62 932023 932022 C 653 0.00 1360 reject_low 8 ALIGNMENT 0 Y12-1g11.p1k chr16 714 62 56789 56788 C 653 0.00 1360 reject_low 20 ALIGNMENT 0 Y12-1g11.p1k chr07 62 734 823000 822999 F 673 0.00 1360 reject_low 9 ALIGNMENT 0 Y12-1g11.p1k chr15 856 831 594729 594728 C 26 0.00 1360 reject_low 26 ALIGNMENT 146 Y12-1g11.p1k chr13 735 947 378304 378522 F 213 92.02 1360 reject_low 22 ALIGNMENT 190 Y12-1g11.p1k chr13 715 947 362586 362818 F 233 95.71 1360 reject_low 4 ALIGNMENT 0 Y12-1g11.p1k chr14 714 62 519498 519497 C 653 0.00 1360 reject_low 23 ALIGNMENT 91 Y12-1g11.p1k chr13 1072 941 573126 573261 C 132 92.42 1360 accept 0 ALIGNMENT 0 Y12-1g11.p1k chr16 713 62 62377 62376 C 652 0.00 1360 reject_low 18 ALIGNMENT 161 Y12-1g11.p1k chr10 947 715 472476 472714 C 233 91.85 1360 reject_low 17 ALIGNMENT 157 Y12-1g11.p1k chr01 715 946 165827 166064 F 232 91.38 1360 reject_low 19 ALIGNMENT 0 Y12-1g11.p1k chr13 62 734 378304 378303 F 673 0.00 1360 reject_low 22 ALIGNMENT 1002 Y12-1g11.q1k chr13 35 1186 568856 570018 F 1152 96.35 1303 accept 0 ALIGNMENT 104 Y12-1g11.p1k chr14 946 715 524829 525063 C 232 84.05 1360 reject_low 24 ALIGNMENT 0 Y12-1g11.p1k chr13 62 734 372716 372715 F 673 0.00 1360 reject_low 21 ALIGNMENT 187 Y12-1g11.p1k chr14 715 947 102192 102424 F 233 95.28 1360 reject_low 6 ALIGNMENT 0 Y12-1g11.p1k chr02 734 62 265473 265472 C 673 0.00 1360 reject_low 14 ALIGNMENT 0 Y12-1g11.p1k chr01 62 712 160237 160236 F 651 0.00 1360 reject_low 12 ALIGNMENT 0 Y12-1g11.p1k chr14 62 714 102192 102191 F 653 0.00 1360 reject_low 6 ALIGNMENT 169 Y12-1g11.p1k chr02 947 735 265260 265472 C 213 95.31 1360 reject_low 14 ALIGNMENT 190 Y12-1g11.p1k chr13 715 947 357004 357236 F 233 95.71 1360 reject_low 3 ALIGNMENT 190 Y12-1g11.p1k chr11 715 947 517095 517327 F 233 95.71 1360 reject_low 2 ALIGNMENT 29 Y12-1g11.p1k chr15 830 799 594728 594759 C 32 96.88 1360 reject_low 26 ALIGNMENT 157 Y12-1g11.p1k chr16 946 715 56551 56788 C 232 91.38 1360 reject_low 20 ALIGNMENT 0 Y12-1g11.p1k chr16 714 62 560810 560809 C 653 0.00 1360 reject_low 7 ALIGNMENT 0 Y12-1g11.p1k chr13 62 714 357004 357003 F 653 0.00 1360 reject_low 3 ALIGNMENT 49 Y12-1g11.p1k chr13 819 947 573111 573239 F 129 82.95 1360 reject_low 25 ALIGNMENT 146 Y12-1g11.p1k chr13 735 947 372716 372934 F 213 92.02 1360 reject_low 21 ALIGNMENT 0 Y12-1g11.p1k chr13 62 818 573111 573110 F 757 0.00 1360 reject_low 25 ALIGNMENT 169 Y12-1g11.p1k chr02 947 735 259675 259887 C 213 95.31 1360 reject_low 13 ALIGNMENT 172 Y12-1g11.p1k chr15 947 735 594920 595132 C 213 95.77 1360 reject_low 10 ALIGNMENT 158 Y12-1g11.p1k chr16 946 714 62138 62376 C 233 91.42 1360 reject_low 18 ALIGNMENT 0 Y12-1g11.p1k chr08 62 734 543630 543629 F 673 0.00 1360 reject_low 15 ALIGNMENT 159 Y12-1g11.p1k chr01 713 946 160237 160476 F 234 91.45 1360 reject_low 12 ALIGNMENT 1065 Y12-1g12.p1k chr12 24 1196 451856 453042 F 1173 97.27 1368 accept 0 ALIGNMENT 860 Y12-1g12.q1k chr12 1016 39 464221 465210 C 978 97.03 1242 accept 1 ALIGNMENT 0 Y12-1g12.p1k chr12 743 870 490543 490542 F 128 0.00 1368 reject_low 2 ALIGNMENT 860 Y12-1g12.q1k chr12 1016 39 455084 456073 C 978 97.03 1242 accept 0 ALIGNMENT 1065 Y12-1g12.p1k chr12 24 1196 460993 462179 F 1173 97.27 1368 accept 1 ALIGNMENT 688 Y12-1g12.p1k chr12 24 742 489824 490543 F 719 98.75 1368 reject_low 2 ALIGNMENT 1009 Y12-1g13.q1k chr14 39 1197 531349 532516 F 1159 96.12 1308 accept 0 ALIGNMENT 990 Y12-1g13.p1k chr14 1223 26 535622 536821 C 1198 95.08 1384 accept 0 ALIGNMENT 893 Y12-1g14.q1k chr07 1001 29 1028101 1029085 C 973 98.15 1248 accept 0 ALIGNMENT 955 Y12-1g14.p1k chr07 39 1213 1024863 1026032 F 1175 95.06 1361 accept 0 ALIGNMENT 0 Y12-1g14.q1k chr11 383 887 406203 406202 F 505 0.00 1248 reject_low 1 ALIGNMENT 0 Y12-1g14.q1k chr11 62 355 406177 406176 F 294 0.00 1248 reject_low 1 ALIGNMENT 27 Y12-1g14.q1k chr11 356 382 406177 406203 F 27 100.00 1248 reject_low 1 ALIGNMENT 944 Y12-1g15.q1k chr13 41 1110 524731 525815 F 1070 96.92 1290 accept 0 ALIGNMENT 1017 Y12-1g15.p1k chr13 1150 25 527577 528706 C 1126 98.13 1347 accept 0 ALIGNMENT 955 Y12-1g16.p1k chr03 1234 17 248326 249574 C 1218 93.60 1344 accept 0 ALIGNMENT 1013 Y12-1g16.q1k chr03 38 1153 244519 245634 F 1116 98.30 1366 accept 0 ALIGNMENT 949 Y12-1g17.p1k chr07 1146 24 312918 314045 C 1123 95.37 1364 accept 0 ALIGNMENT 959 Y12-1g17.q1k chr07 29 1188 310063 311228 F 1160 95.43 1311 accept 0 ALIGNMENT 953 Y12-1g18.q1k chr12 38 1188 457483 458644 F 1151 94.44 1431 accept 0 ALIGNMENT 964 Y12-1g18.p1k chr12 1107 18 462366 463460 C 1090 96.88 1358 accept 0 ALIGNMENT 953 Y12-1g18.q1k chr12 38 1188 466620 467781 F 1151 94.44 1431 reject_low 1 ALIGNMENT 985 Y12-1g18.p1k chr12 1158 18 453176 454323 C 1141 96.23 1358 reject_low 2 ALIGNMENT 872 Y12-1g19.p1k chr08 1051 18 464527 465569 C 1034 96.32 1300 accept 0 ALIGNMENT 55 Y12-1g19.p1k chr03 47 111 5346 5410 F 65 95.38 1300 reject_low 2 ALIGNMENT 1014 Y12-1g19.q1k chr08 35 1224 461689 462891 F 1190 95.63 1281 accept 0 ALIGNMENT 0 Y12-1g19.p1k chr03 318 839 5598 5597 F 522 0.00 1300 reject_low 2 ALIGNMENT 0 Y12-1g19.p1k chr03 112 155 5411 5433 F 44 0.00 1300 reject_low 2 ALIGNMENT 35 Y12-1g19.p1k chr03 156 317 5434 5598 F 162 75.31 1300 reject_low 2 ALIGNMENT 110 Y12-1g19.p1k chr11 311 47 663784 664052 C 265 81.51 1300 reject_low 1 ALIGNMENT 0 Y12-1g19.p1k chr11 839 312 663785 663784 C 528 0.00 1300 reject_low 1 ALIGNMENT 995 Y12-1g20.p1k chr07 18 1149 396085 397228 F 1132 96.73 1337 accept 0 ALIGNMENT 944 Y12-1g20.q1k chr07 1170 41 397255 398399 C 1130 95.40 1350 accept 0 ALIGNMENT 1017 Y12-1g21.p1k chr16 19 1250 506220 507449 F 1232 95.29 1304 accept 0 ALIGNMENT 1027 Y12-1g21.q1k chr16 1224 33 509408 510608 C 1192 97.15 1261 accept 0 ALIGNMENT 1019 Y12-1g23.p1k chr13 1270 20 186135 187380 C 1251 95.20 1271 ambiguous_trans 7 ALIGNMENT 1019 Y12-1g23.p1k chr12 20 1270 217790 219035 F 1251 95.20 1271 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-1g23.q1k chr12 62 362 736685 736684 F 301 0.00 1273 reject_low 24 ALIGNMENT 1009 Y12-1g23.p1k chr16 1270 20 846379 847627 C 1251 94.96 1271 ambiguous_trans 20 ALIGNMENT 1016 Y12-1g23.p1k chr13 1270 20 198302 199547 C 1251 95.12 1271 ambiguous_trans 15 ALIGNMENT 1019 Y12-1g23.p1k chr05 20 1270 446101 447346 F 1251 95.20 1271 ambiguous_trans 4 ALIGNMENT 1016 Y12-1g23.p1k chr04 1270 20 1097733 1098978 C 1251 95.12 1271 ambiguous_trans 13 ALIGNMENT 0 Y12-1g23.q1k chr12 740 903 737061 737060 F 164 0.00 1273 reject_low 24 ALIGNMENT 100 Y12-1g23.q1k chr12 363 739 736685 737061 F 377 75.86 1273 reject_low 24 ALIGNMENT 1016 Y12-1g23.p1k chr13 20 1270 375405 376650 F 1251 95.12 1271 ambiguous_trans 16 ALIGNMENT 1019 Y12-1g23.p1k chr05 20 1270 495200 496445 F 1251 95.20 1271 ambiguous_trans 5 ALIGNMENT 1019 Y12-1g23.p1k chr14 20 1270 99313 100558 F 1251 95.20 1271 ambiguous_trans 9 ALIGNMENT 1014 Y12-1g23.p1k chr10 1268 20 474350 475593 C 1249 95.04 1271 ambiguous_trans 17 ALIGNMENT 1037 Y12-1g23.p1k chr04 20 1270 881003 882248 F 1251 95.68 1271 ambiguous_trans 3 ALIGNMENT 996 Y12-1g23.p1k chr16 20 1268 853334 854577 F 1249 94.56 1271 ambiguous_trans 22 ALIGNMENT 1007 Y12-1g23.p1k chr12 20 1270 478683 479928 F 1251 94.88 1271 ambiguous_trans 21 ALIGNMENT 1046 Y12-1g23.p1k chr02 1270 20 223007 224252 C 1251 95.92 1271 ambiguous_trans 1 ALIGNMENT 1016 Y12-1g23.p1k chr10 1270 20 479932 481177 C 1251 95.12 1271 ambiguous_trans 14 ALIGNMENT 1010 Y12-1g23.p1k chr16 1270 20 58422 59667 C 1251 94.96 1271 ambiguous_trans 19 ALIGNMENT 1012 Y12-1g23.p1k chr07 20 1269 820101 821345 F 1250 95.04 1271 ambiguous_trans 18 ALIGNMENT 1019 Y12-1g23.p1k chr16 20 1270 807346 808591 F 1251 95.20 1271 ambiguous_trans 11 ALIGNMENT 1019 Y12-1g23.p1k chr13 20 1270 359707 360952 F 1251 95.20 1271 ambiguous_trans 8 ALIGNMENT 944 Y12-1g23.p1k chr14 1270 20 521131 522358 C 1251 93.92 1271 ambiguous_trans 23 ALIGNMENT 1006 Y12-1g23.q1k chr10 39 1215 57621 58807 F 1177 95.67 1273 accept 0 ALIGNMENT 1016 Y12-1g23.p1k chr04 20 1270 648202 649447 F 1251 95.12 1271 ambiguous_trans 12 ALIGNMENT 1037 Y12-1g23.p1k chr02 1270 20 261541 262786 C 1251 95.68 1271 ambiguous_trans 2 ALIGNMENT 1019 Y12-1g23.p1k chr15 1270 20 119673 120918 C 1251 95.20 1271 ambiguous_trans 10 ALIGNMENT 971 Y12-1g24.p1k chr12 1107 16 456418 457514 C 1092 96.98 1227 accept 0 ALIGNMENT 1033 Y12-1g24.q1k chr12 30 1170 462052 463197 F 1141 97.02 1296 accept 1 ALIGNMENT 971 Y12-1g24.p1k chr12 1107 16 465555 466651 C 1092 96.98 1227 accept 1 ALIGNMENT 1033 Y12-1g24.q1k chr12 30 1170 452915 454060 F 1141 97.02 1296 accept 0 ALIGNMENT 928 Y12-1h01.q1k chr16 1177 36 15610 16765 C 1142 94.40 1317 reject_low 1 ALIGNMENT 648 Y12-1h01.p1k chr13 726 21 917887 918599 C 706 98.44 1301 reject_low 2 ALIGNMENT 814 Y12-1h01.p1k chr15 1101 21 1077660 1078776 C 1081 93.52 1301 accept_tel 0 ALIGNMENT 987 Y12-1h01.q1k chr15 36 1177 1074312 1075464 F 1142 96.15 1317 accept_tel 0 ALIGNMENT 0 Y12-1h01.p1k chr13 819 727 917888 917887 C 93 0.00 1301 reject_low 2 ALIGNMENT 847 Y12-1h01.p1k chr16 17 1101 12360 13475 F 1085 94.38 1301 reject_low 1 ALIGNMENT 24 Y12-1h02.q1k chr04 266 159 1329745 1329855 C 108 76.85 1278 reject_low 2 ALIGNMENT 0 Y12-1h02.q1k chr04 857 427 1329778 1329777 C 431 0.00 1278 reject_low 3 ALIGNMENT 0 Y12-1h02.q1k chr04 277 267 1329746 1329744 C 11 0.00 1278 reject_low 2 ALIGNMENT 0 Y12-1h02.q1k chr04 857 337 1329688 1329687 C 521 0.00 1278 reject_low 2 ALIGNMENT 0 Y12-1h02.q1k chr04 158 62 1329856 1329855 C 97 0.00 1278 reject_low 2 ALIGNMENT 0 Y12-1h02.q1k chr04 339 62 427423 427422 C 278 0.00 1278 reject_low 1 ALIGNMENT 20 Y12-1h02.q1k chr04 380 340 427382 427422 C 41 85.37 1278 reject_low 1 ALIGNMENT 0 Y12-1h02.q1k chr04 367 368 1329836 1329847 C 0 0.00 1278 reject_low 3 ALIGNMENT 23 Y12-1h02.q1k chr04 367 258 1329848 1329954 C 110 77.27 1278 reject_low 3 ALIGNMENT 0 Y12-1h02.q1k chr04 857 381 427383 427382 C 477 0.00 1278 reject_low 1 ALIGNMENT 0 Y12-1h02.q1k chr04 257 62 1329955 1329954 C 196 0.00 1278 reject_low 3 ALIGNMENT 984 Y12-1h02.p1k chr04 19 1213 1324607 1325814 F 1195 95.40 1357 accept 0 ALIGNMENT 27 Y12-1h02.q1k chr04 426 368 1329777 1329835 C 59 83.05 1278 reject_low 3 ALIGNMENT 28 Y12-1h02.q1k chr04 336 278 1329687 1329745 C 59 83.05 1278 reject_low 2 ALIGNMENT 1015 Y12-1h02.q1k chr04 1192 39 1328907 1330074 C 1154 95.49 1278 accept 0 ALIGNMENT 950 Y12-1h04.p1k chr04 1153 22 385964 387104 C 1132 95.58 1371 accept 0 ALIGNMENT 767 Y12-1h04.q1k chr04 34 998 380758 381726 F 965 94.09 1336 accept 0 ALIGNMENT 74 Y12-1h06.p1k chr07 825 752 736343 736416 C 74 100.00 1387 reject_low 10 ALIGNMENT 171 Y12-1h06.p1k chr10 835 661 355278 355452 C 175 99.43 1387 reject_low 3 ALIGNMENT 0 Y12-1h06.p1k chr02 869 838 405859 405858 C 32 0.00 1387 reject_low 1 ALIGNMENT 78 Y12-1h06.p1k chr09 662 741 336338 336417 F 80 100.00 1387 reject_low 16 ALIGNMENT 983 Y12-1h06.p1k chr04 1143 28 568550 569675 C 1116 96.77 1387 accept 0 ALIGNMENT 0 Y12-1h06.p1k chr07 836 869 828811 828810 F 34 0.00 1387 reject_low 7 ALIGNMENT 0 Y12-1h06.p1k chr10 660 62 204733 204732 C 599 0.00 1387 reject_low 14 ALIGNMENT 0 Y12-1h06.p1k chr11 835 869 162574 162573 F 35 0.00 1387 reject_low 8 ALIGNMENT 83 Y12-1h06.p1k chr07 662 746 544573 544657 F 85 100.00 1387 reject_low 13 ALIGNMENT 0 Y12-1h06.p1k chr11 743 869 513046 513045 F 127 0.00 1387 reject_low 18 ALIGNMENT 0 Y12-1h06.p1k chr07 869 826 736344 736343 C 44 0.00 1387 reject_low 10 ALIGNMENT 81 Y12-1h06.p1k chr11 748 834 162488 162574 F 87 97.70 1387 reject_low 8 ALIGNMENT 86 Y12-1h06.p1k chr07 835 744 405461 405552 C 92 97.83 1387 reject_low 6 ALIGNMENT 0 Y12-1h06.p1k chr09 62 661 324293 324292 F 600 0.00 1387 reject_low 15 ALIGNMENT 175 Y12-1h06.p1k chr02 837 662 405858 406033 C 176 100.00 1387 reject_low 1 ALIGNMENT 0 Y12-1h06.p1k chr10 661 62 541502 541501 C 600 0.00 1387 reject_low 17 ALIGNMENT 0 Y12-1h06.p1k chr07 659 62 531696 531695 C 598 0.00 1387 reject_low 12 ALIGNMENT 0 Y12-1h06.p1k chr11 62 747 162488 162487 F 686 0.00 1387 reject_low 8 ALIGNMENT 0 Y12-1h06.p1k chr13 661 62 463633 463632 C 600 0.00 1387 reject_low 19 ALIGNMENT 77 Y12-1h06.p1k chr12 741 664 793918 793995 C 78 100.00 1387 reject_low 20 ALIGNMENT 0 Y12-1h06.p1k chr05 869 841 138651 138650 C 29 0.00 1387 reject_low 4 ALIGNMENT 0 Y12-1h06.p1k chr12 658 62 427216 427215 C 597 0.00 1387 reject_low 11 ALIGNMENT 78 Y12-1h06.p1k chr12 748 659 427124 427215 C 90 96.67 1387 reject_low 11 ALIGNMENT 0 Y12-1h06.p1k chr02 661 62 406034 406033 C 600 0.00 1387 reject_low 1 ALIGNMENT 86 Y12-1h06.p1k chr07 744 835 828720 828811 F 92 97.83 1387 reject_low 7 ALIGNMENT 0 Y12-1h06.p1k chr12 869 742 793919 793918 C 128 0.00 1387 reject_low 20 ALIGNMENT 0 Y12-1h06.p1k chr07 747 869 544657 544656 F 123 0.00 1387 reject_low 13 ALIGNMENT 0 Y12-1h06.p1k chr14 734 869 519163 519162 F 136 0.00 1387 reject_low 21 ALIGNMENT 0 Y12-1h06.p1k chr07 62 743 828720 828719 F 682 0.00 1387 reject_low 7 ALIGNMENT 0 Y12-1h06.p1k chr09 743 869 324373 324372 F 127 0.00 1387 reject_low 15 ALIGNMENT 79 Y12-1h06.p1k chr05 840 744 138650 138745 C 97 94.85 1387 reject_low 4 ALIGNMENT 0 Y12-1h06.p1k chr10 62 661 374332 374331 F 600 0.00 1387 reject_low 2 ALIGNMENT 1039 Y12-1h06.q1k chr04 37 1264 563504 564739 F 1228 95.85 1370 accept 0 ALIGNMENT 78 Y12-1h06.p1k chr10 741 662 541422 541501 C 80 100.00 1387 reject_low 17 ALIGNMENT 0 Y12-1h06.p1k chr07 869 836 405462 405461 C 34 0.00 1387 reject_low 6 ALIGNMENT 70 Y12-1h06.p1k chr14 663 733 519093 519163 F 71 100.00 1387 reject_low 21 ALIGNMENT 0 Y12-1h06.p1k chr13 869 742 463554 463553 C 128 0.00 1387 reject_low 19 ALIGNMENT 0 Y12-1h06.p1k chr09 742 869 336417 336416 F 128 0.00 1387 reject_low 16 ALIGNMENT 79 Y12-1h06.p1k chr10 741 661 204652 204732 C 81 100.00 1387 reject_low 14 ALIGNMENT 0 Y12-1h06.p1k chr07 869 748 531609 531608 C 122 0.00 1387 reject_low 12 ALIGNMENT 78 Y12-1h06.p1k chr11 663 742 512967 513046 F 80 100.00 1387 reject_low 18 ALIGNMENT 0 Y12-1h06.p1k chr13 826 869 747964 747963 F 44 0.00 1387 reject_low 9 ALIGNMENT 0 Y12-1h06.p1k chr13 62 747 747887 747886 F 686 0.00 1387 reject_low 9 ALIGNMENT 175 Y12-1h06.p1k chr10 662 837 374332 374507 F 176 100.00 1387 reject_low 2 ALIGNMENT 0 Y12-1h06.p1k chr05 743 62 138746 138745 C 682 0.00 1387 reject_low 4 ALIGNMENT 0 Y12-1h06.p1k chr12 869 749 427125 427124 C 121 0.00 1387 reject_low 11 ALIGNMENT 0 Y12-1h06.p1k chr07 743 62 405553 405552 C 682 0.00 1387 reject_low 6 ALIGNMENT 0 Y12-1h06.p1k chr09 62 661 336338 336337 F 600 0.00 1387 reject_low 16 ALIGNMENT 0 Y12-1h06.p1k chr10 869 836 355279 355278 C 34 0.00 1387 reject_low 3 ALIGNMENT 0 Y12-1h06.p1k chr11 62 662 512967 512966 F 601 0.00 1387 reject_low 18 ALIGNMENT 0 Y12-1h06.p1k chr07 62 661 544573 544572 F 600 0.00 1387 reject_low 13 ALIGNMENT 0 Y12-1h06.p1k chr10 869 742 541423 541422 C 128 0.00 1387 reject_low 17 ALIGNMENT 0 Y12-1h06.p1k chr12 663 62 793996 793995 C 602 0.00 1387 reject_low 20 ALIGNMENT 0 Y12-1h06.p1k chr10 838 869 374507 374506 F 32 0.00 1387 reject_low 2 ALIGNMENT 0 Y12-1h06.p1k chr07 751 62 736417 736416 C 690 0.00 1387 reject_low 10 ALIGNMENT 0 Y12-1h06.p1k chr13 62 739 131813 131812 F 678 0.00 1387 reject_low 5 ALIGNMENT 0 Y12-1h06.p1k chr13 838 869 131909 131908 F 32 0.00 1387 reject_low 5 ALIGNMENT 79 Y12-1h06.p1k chr09 662 742 324293 324373 F 81 100.00 1387 reject_low 15 ALIGNMENT 87 Y12-1h06.p1k chr13 740 837 131813 131909 F 98 96.94 1387 reject_low 5 ALIGNMENT 80 Y12-1h06.p1k chr07 747 660 531608 531695 C 88 97.73 1387 reject_low 12 ALIGNMENT 0 Y12-1h06.p1k chr10 869 742 204653 204652 C 128 0.00 1387 reject_low 14 ALIGNMENT 0 Y12-1h06.p1k chr14 62 662 519093 519092 F 601 0.00 1387 reject_low 21 ALIGNMENT 75 Y12-1h06.p1k chr13 748 825 747887 747964 F 78 98.72 1387 reject_low 9 ALIGNMENT 0 Y12-1h06.p1k chr10 660 62 355453 355452 C 599 0.00 1387 reject_low 3 ALIGNMENT 78 Y12-1h06.p1k chr13 741 662 463553 463632 C 80 100.00 1387 reject_low 19 ALIGNMENT 962 Y12-1h07.p1k chr16 18 1262 927825 929082 F 1245 94.06 1412 accept 0 ALIGNMENT 922 Y12-1h07.q1k chr16 1123 35 930498 931593 C 1089 95.32 1322 accept 0 ALIGNMENT 1021 Y12-1h08.p1k chr12 1240 17 709495 710721 C 1224 96.16 1467 accept 0 ALIGNMENT 938 Y12-1h08.q1k chr12 28 1214 705686 706904 F 1187 93.77 1340 accept 0 ALIGNMENT 385 Y12-1h09.p1k chr05 58 771 361183 361897 F 714 85.57 1395 accept 0 ALIGNMENT 0 Y12-1h09.p1k chr05 772 850 361898 361970 F 79 0.00 1395 accept 0 ALIGNMENT 20 Y12-1h09.p1k chr05 851 902 361971 362021 F 52 80.77 1395 accept 0 ALIGNMENT 944 Y12-1h10.q1k chr04 1184 45 500312 501466 C 1140 95.35 1344 accept 0 ALIGNMENT 913 Y12-1h10.p1k chr04 19 1095 497486 498584 F 1077 96.10 1369 accept 0 ALIGNMENT 1030 Y12-1h11.q1k chr04 1169 38 1056638 1057783 C 1132 97.53 1320 accept 0 ALIGNMENT 918 Y12-1h11.p1k chr04 19 1132 1052647 1053774 F 1114 95.06 1325 accept 0 ALIGNMENT 884 Y12-1h12.p1k chr04 1051 16 869980 871031 C 1036 96.24 1335 accept 0 ALIGNMENT 1010 Y12-1h12.q1k chr04 39 1169 866544 867685 F 1131 97.26 1355 accept 0 ALIGNMENT 506 Y12-1h13.q1k chr07 28 751 262772 263504 F 724 90.75 982 accept 0 ALIGNMENT 0 Y12-1h13.p1k chr07 62 662 267593 267592 F 601 0.00 1310 reject_low 1 ALIGNMENT 924 Y12-1h13.p1k chr07 1092 21 267163 268256 C 1072 96.83 1310 accept 0 ALIGNMENT 22 Y12-1h13.p1k chr07 663 684 267593 267614 F 22 100.00 1310 reject_low 1 ALIGNMENT 0 Y12-1h13.p1k chr07 685 893 267614 267613 F 209 0.00 1310 reject_low 1 ALIGNMENT 1002 Y12-1h14.q1k chr14 1215 32 623192 624393 C 1184 96.11 1318 accept 0 ALIGNMENT 999 Y12-1h14.p1k chr14 18 1222 620130 621339 F 1205 95.02 1427 accept 0 ALIGNMENT 915 Y12-1h15.q1k chr11 38 1184 88628 89784 F 1147 95.20 1309 accept_chi 1 ALIGNMENT 946 Y12-1h15.p1k chr02 1132 24 484041 485167 C 1109 95.94 1319 accept_chi 0 ALIGNMENT 1031 Y12-1h16.q1k chr11 1272 38 576548 577804 C 1235 95.38 1342 accept 0 ALIGNMENT 819 Y12-1h16.p1k chr16 1089 28 926459 927559 C 1062 93.88 1326 ambiguous_tel 1 ALIGNMENT 924 Y12-1h17.q1k chr03 37 1077 96886 97940 F 1041 97.31 1314 accept 0 ALIGNMENT 972 Y12-1h17.p1k chr03 1213 19 99937 101156 C 1195 94.48 1347 accept 0 ALIGNMENT 962 Y12-1h18.q1k chr15 1164 34 845660 846803 C 1131 95.93 1345 accept 0 ALIGNMENT 952 Y12-1h18.p1k chr15 18 1110 840887 841991 F 1093 96.71 1377 accept 0 ALIGNMENT 689 Y12-1h19.p1k chr12 36 1069 198875 199910 F 1034 89.65 1329 accept 0 ALIGNMENT 992 Y12-1h20.p1k chr07 21 1148 838964 840101 F 1128 97.07 1403 accept 0 ALIGNMENT 882 Y12-1h20.q1k chr07 1042 35 842236 843253 C 1008 96.43 1247 accept 0 ALIGNMENT 936 Y12-1h21.p1k chr08 29 1159 269814 270955 F 1131 96.29 1275 accept 0 ALIGNMENT 942 Y12-1h21.q1k chr08 1199 37 273624 274796 C 1163 94.50 1315 accept 0 ALIGNMENT 1055 Y12-1h22.p1k chr12 18 1242 453009 454242 F 1225 96.24 1366 accept 0 ALIGNMENT 954 Y12-1h22.q1k chr12 1205 40 457789 458964 C 1166 95.45 1291 accept 0 ALIGNMENT 954 Y12-1h22.q1k chr12 1205 40 466926 468101 C 1166 95.45 1291 accept 1 ALIGNMENT 1055 Y12-1h22.p1k chr12 18 1242 462146 463379 F 1225 96.24 1366 accept 1 ALIGNMENT 1016 Y12-1h23.q1k chr13 35 1248 412947 414174 F 1214 95.06 1288 accept 0 ALIGNMENT 1006 Y12-1h23.p1k chr13 1235 30 416962 418160 C 1206 96.43 1276 accept 0 ALIGNMENT 0 Y12-1i01.q1k chr11 486 439 647412 647432 C 48 0.00 1285 reject_low 6 ALIGNMENT 0 Y12-1i01.q1k chr11 864 817 647223 647432 C 48 0.00 1285 reject_low 13 ALIGNMENT 350 Y12-1i01.q1k chr11 1074 359 646905 647620 C 716 84.64 1285 reject_low 1 ALIGNMENT 80 Y12-1i01.q1k chr11 1070 956 647179 647294 C 115 89.57 1285 reject_low 19 ALIGNMENT 0 Y12-1i01.q1k chr11 358 62 647621 647620 C 297 0.00 1285 reject_low 1 ALIGNMENT 0 Y12-1i01.q1k chr11 864 817 647601 647621 C 48 0.00 1285 reject_low 20 ALIGNMENT 0 Y12-1i01.q1k chr11 787 720 646910 646909 C 68 0.00 1285 reject_low 3 ALIGNMENT 0 Y12-1i01.q1k chr11 958 736 647103 647162 C 223 0.00 1285 reject_low 6 ALIGNMENT 195 Y12-1i01.q1k chr11 996 737 647551 647809 C 260 92.31 1285 reject_low 2 ALIGNMENT 0 Y12-1i01.q1k chr11 958 922 647103 647166 C 37 0.00 1285 reject_low 13,18 ALIGNMENT 45 Y12-1i01.q1k chr11 438 379 647244 647303 C 60 91.67 1285 reject_low 17 ALIGNMENT 0 Y12-1i01.q1k chr11 486 62 647790 647789 C 425 0.00 1285 reject_low 13 ALIGNMENT 0 Y12-1i01.q1k chr11 594 62 647790 647789 C 533 0.00 1285 reject_low 4 ALIGNMENT 36 Y12-1i01.q1k chr11 654 595 647730 647789 C 60 86.67 1285 reject_low 4 ALIGNMENT 0 Y12-1i01.q1k chr11 378 62 647493 647492 C 317 0.00 1285 reject_low 5,6 ALIGNMENT 45 Y12-1i01.q1k chr11 816 757 647433 647492 C 60 91.67 1285 reject_low 13,19 ALIGNMENT 35 Y12-1i01.q1k chr11 921 865 647167 647222 C 57 85.96 1285 reject_low 13,18 ALIGNMENT 250 Y12-1i01.q1k chr11 996 676 647362 647681 C 321 93.15 1285 reject_low 4 ALIGNMENT 48 Y12-1i01.q1k chr11 438 379 647055 647114 C 60 93.33 1285 reject_low 15,16 ALIGNMENT 0 Y12-1i01.q1k chr11 864 817 647412 647432 C 48 0.00 1285 reject_low 19 ALIGNMENT 0 Y12-1i01.q1k chr11 756 736 647493 647729 C 21 0.00 1285 reject_low 19 ALIGNMENT 215 Y12-1i01.q1k chr11 735 487 647163 647411 C 249 95.58 1285 reject_low 6 ALIGNMENT 0 Y12-1i01.q1k chr11 864 439 647034 647054 C 426 0.00 1285 reject_low 15 ALIGNMENT 83 Y12-1i01.q1k chr11 1082 956 647545 647672 C 127 88.19 1285 reject_low 12 ALIGNMENT 52 Y12-1i01.q1k chr11 530 464 646909 646975 C 67 92.54 1285 reject_low 16 ALIGNMENT 0 Y12-1i01.q1k chr11 955 922 647484 647544 C 34 0.00 1285 reject_low 20 ALIGNMENT 0 Y12-1i01.q1k chr11 378 62 647682 647681 C 317 0.00 1285 reject_low 18 ALIGNMENT 206 Y12-1i01.q1k chr11 735 487 647352 647600 C 249 94.38 1285 reject_low 18 ALIGNMENT 0 Y12-1i01.q1k chr11 756 736 647682 647729 C 21 0.00 1285 reject_low 20 ALIGNMENT 0 Y12-1i01.q1k chr11 955 922 647295 647355 C 34 0.00 1285 reject_low 19 ALIGNMENT 0 Y12-1i01.q1k chr11 675 655 647682 647729 C 21 0.00 1285 reject_low 4 ALIGNMENT 65 Y12-1i01.q1k chr11 735 656 647730 647809 C 80 93.75 1285 reject_low 12,19,20 ALIGNMENT 61 Y12-1i01.q1k chr11 647 572 646900 646975 C 76 93.42 1285 reject_low 14 ALIGNMENT 0 Y12-1i01.q1k chr11 925 62 647810 647809 C 864 0.00 1285 reject_low 8 ALIGNMENT 83 Y12-1i01.q1k chr11 1070 956 647368 647483 C 115 90.43 1285 reject_low 20 ALIGNMENT 221 Y12-1i01.q1k chr11 735 487 647541 647789 C 249 96.39 1285 reject_low 13 ALIGNMENT 0 Y12-1i01.q1k chr11 841 817 646976 646973 C 25 0.00 1285 reject_low 7 ALIGNMENT 0 Y12-1i01.q1k chr11 787 423 646910 646909 C 365 0.00 1285 reject_low 11 ALIGNMENT 50 Y12-1i01.q1k chr11 910 842 646907 646975 C 69 89.86 1285 reject_low 7 ALIGNMENT 0 Y12-1i01.q1k chr11 463 439 646976 647054 C 25 0.00 1285 reject_low 16 ALIGNMENT 0 Y12-1i01.q1k chr11 864 817 647223 647243 C 48 0.00 1285 reject_low 18 ALIGNMENT 57 Y12-1i01.q1k chr11 991 865 646908 647033 C 127 82.68 1285 reject_low 15 ALIGNMENT 0 Y12-1i01.q1k chr11 378 62 647115 647114 C 317 0.00 1285 reject_low 15,16 ALIGNMENT 0 Y12-1i01.q1k chr11 787 648 646901 646900 C 140 0.00 1285 reject_low 14 ALIGNMENT 86 Y12-1i01.q1k chr11 1092 959 646967 647102 C 134 88.06 1285 reject_low 6,13,18 ALIGNMENT 0 Y12-1i01.q1k chr11 378 62 646953 646952 C 317 0.00 1285 reject_low 11 ALIGNMENT 0 Y12-1i01.q1k chr11 864 62 647790 647789 C 803 0.00 1285 reject_low 9 ALIGNMENT 0 Y12-1i01.q1k chr11 358 62 647054 647053 C 297 0.00 1285 reject_low 14 ALIGNMENT 0 Y12-1i01.q1k chr11 787 547 646975 646974 C 241 0.00 1285 reject_low 10 ALIGNMENT 32 Y12-1i01.q1k chr11 921 865 647734 647789 C 57 84.21 1285 reject_low 9 ALIGNMENT 0 Y12-1i01.q1k chr11 756 736 647493 647540 C 21 0.00 1285 reject_low 13 ALIGNMENT 42 Y12-1i01.q1k chr11 438 379 647622 647681 C 60 90.00 1285 reject_low 18 ALIGNMENT 0 Y12-1i01.q1k chr11 787 531 646910 646909 C 257 0.00 1285 reject_low 16 ALIGNMENT 0 Y12-1i01.q1k chr11 736 62 647810 647809 C 675 0.00 1285 reject_low 2 ALIGNMENT 0 Y12-1i01.q1k chr11 486 439 647223 647432 C 48 0.00 1285 reject_low 5 ALIGNMENT 0 Y12-1i01.q1k chr11 378 62 647304 647303 C 317 0.00 1285 reject_low 17 ALIGNMENT 0 Y12-1i01.q1k chr11 571 439 646976 646973 C 133 0.00 1285 reject_low 14 ALIGNMENT 0 Y12-1i01.q1k chr11 486 439 647601 647621 C 48 0.00 1285 reject_low 18 ALIGNMENT 0 Y12-1i01.q1k chr11 756 439 647115 647243 C 318 0.00 1285 reject_low 17 ALIGNMENT 39 Y12-1i01.q1k chr11 816 757 647622 647681 C 60 88.33 1285 reject_low 20 ALIGNMENT 636 Y12-1i01.q1k chr11 996 38 647173 648130 C 959 90.09 1285 accept 0 ALIGNMENT 168 Y12-1i01.q1k chr11 816 359 646974 647431 C 458 81.00 1285 reject_low 7 ALIGNMENT 156 Y12-1i01.q1k chr11 719 359 646909 647242 C 361 85.04 1285 reject_low 3 ALIGNMENT 0 Y12-1i01.q1k chr11 358 62 647432 647431 C 297 0.00 1285 reject_low 7 ALIGNMENT 42 Y12-1i01.q1k chr11 816 757 647055 647114 C 60 90.00 1285 reject_low 17 ALIGNMENT 0 Y12-1i01.q1k chr11 486 62 647034 647033 C 425 0.00 1285 reject_low 10 ALIGNMENT 0 Y12-1i01.q1k chr11 358 62 647243 647242 C 297 0.00 1285 reject_low 3 ALIGNMENT 32 Y12-1i01.q1k chr11 921 865 647545 647600 C 57 84.21 1285 reject_low 20 ALIGNMENT 252 Y12-1i01.q1k chr11 800 487 646909 647222 C 314 93.63 1285 reject_low 5 ALIGNMENT 56 Y12-1i01.q1k chr11 438 359 646974 647053 C 80 90.00 1285 reject_low 14 ALIGNMENT 35 Y12-1i01.q1k chr11 921 865 647356 647411 C 57 85.96 1285 reject_low 19 ALIGNMENT 0 Y12-1i01.q1k chr11 756 736 647304 647351 C 21 0.00 1285 reject_low 18 ALIGNMENT 42 Y12-1i01.q1k chr11 816 757 647244 647303 C 60 90.00 1285 reject_low 18 ALIGNMENT 45 Y12-1i01.q1k chr11 996 926 647740 647809 C 71 90.14 1285 reject_low 8 ALIGNMENT 0 Y12-1i01.q1k chr11 655 62 647810 647809 C 594 0.00 1285 reject_low 12,19,20 ALIGNMENT 35 Y12-1i01.q1k chr11 422 379 646909 646952 C 44 93.18 1285 reject_low 11 ALIGNMENT 39 Y12-1i01.q1k chr11 546 487 646974 647033 C 60 88.33 1285 reject_low 10 ALIGNMENT 0 Y12-1i01.q1k chr11 955 736 647673 647729 C 220 0.00 1285 reject_low 12 ALIGNMENT 1005 Y12-1i01.p1k chr11 23 1223 643883 645100 F 1201 96.09 1354 accept 0 ALIGNMENT 48 Y12-1i01.q1k chr11 438 379 647433 647492 C 60 93.33 1285 reject_low 5,6 ALIGNMENT 996 Y12-1i03.q1k chr12 38 1187 453731 454892 F 1150 96.26 1339 manual 0 ALIGNMENT 1046 Y12-1i03.p1k chr12 1184 12 465603 466784 C 1173 96.76 1372 manual 1 ALIGNMENT 1046 Y12-1i03.p1k chr12 1184 12 456466 457647 C 1173 96.76 1372 manual 0 ALIGNMENT 992 Y12-1i03.q1k chr12 38 1176 462868 464017 F 1139 96.40 1339 manual 1 ALIGNMENT 993 Y12-1i04.p1k chr14 1207 17 449094 450303 C 1191 95.89 1379 accept 0 ALIGNMENT 985 Y12-1i04.q1k chr14 32 1187 444613 445785 F 1156 96.02 1313 accept 0 ALIGNMENT 965 Y12-1i05.p1k chr06 1331 27 180984 182288 C 1305 92.11 1438 accept 0 ALIGNMENT 995 Y12-1i05.q1k chr06 33 1210 176054 177229 F 1178 95.50 1402 accept 0 ALIGNMENT 931 Y12-1i06.p1k chr11 1211 19 339654 340860 C 1193 93.46 1433 accept 0 ALIGNMENT 910 Y12-1i06.q1k chr11 35 1110 337526 338611 F 1076 97.30 1308 accept 0 ALIGNMENT 919 Y12-1i07.q1k chr15 38 1217 354843 356033 F 1180 95.00 1366 accept 0 ALIGNMENT 969 Y12-1i07.p1k chr15 1142 24 359746 360874 C 1119 96.07 1346 accept 0 ALIGNMENT 1040 Y12-1i08.p1k chr12 1215 12 452352 453561 C 1204 96.18 1377 reject_low 1 ALIGNMENT 1040 Y12-1i08.p1k chr12 1215 12 461489 462698 C 1204 96.18 1377 accept 0 ALIGNMENT 968 Y12-1i08.q1k chr12 33 1271 458484 459715 F 1239 94.51 1331 accept 0 ALIGNMENT 0 Y12-1i08.q1k chr06 862 62 31729 31728 C 801 0.00 1331 reject_low 3 ALIGNMENT 80 Y12-1i08.q1k chr06 962 863 31629 31728 C 100 96.00 1331 reject_low 3 ALIGNMENT 968 Y12-1i08.q1k chr12 33 1271 467621 468852 F 1239 94.51 1331 reject_low 2 ALIGNMENT 0 Y12-1i09.p1k chr13 62 839 362612 362611 F 778 0.00 1367 reject_low 5 ALIGNMENT 116 Y12-1i09.p1k chr15 1106 840 117733 118013 C 267 85.02 1367 reject_low 17 ALIGNMENT 0 Y12-1i09.p1k chr13 62 839 372722 372721 F 778 0.00 1367 reject_low 15 ALIGNMENT 119 Y12-1i09.p1k chr07 1106 840 541383 541663 C 267 85.39 1367 reject_low 10 ALIGNMENT 1001 Y12-1i09.q1k chr05 1210 38 437325 438513 C 1173 96.42 1336 accept 0 ALIGNMENT 0 Y12-1i09.p1k chr12 62 839 215107 215106 F 778 0.00 1367 reject_low 14 ALIGNMENT 0 Y12-1i09.p1k chr07 839 62 535521 535520 C 778 0.00 1367 reject_low 3 ALIGNMENT 0 Y12-1i09.p1k chr14 839 62 525038 525037 C 778 0.00 1367 reject_low 23 ALIGNMENT 153 Y12-1i09.p1k chr11 840 1130 517121 517422 F 291 87.97 1367 reject_low 7 ALIGNMENT 0 Y12-1i09.p1k chr13 62 839 357030 357029 F 778 0.00 1367 reject_low 4 ALIGNMENT 119 Y12-1i09.p1k chr10 1106 840 472408 472688 C 267 85.39 1367 reject_low 11 ALIGNMENT 0 Y12-1i09.p1k chr01 62 839 165853 165852 F 778 0.00 1367 reject_low 19 ALIGNMENT 0 Y12-1i09.p1k chr10 839 62 472689 472688 C 778 0.00 1367 reject_low 11 ALIGNMENT 0 Y12-1i09.p1k chr13 805 545 363064 363063 C 261 0.00 1367 reject_low 1 ALIGNMENT 148 Y12-1i09.p1k chr02 1135 840 221039 221347 C 296 87.16 1367 reject_low 8 ALIGNMENT 0 Y12-1i09.p1k chr07 839 62 541664 541663 C 778 0.00 1367 reject_low 10 ALIGNMENT 0 Y12-1i09.p1k chr10 839 62 483861 483860 C 778 0.00 1367 reject_low 12 ALIGNMENT 0 Y12-1i09.p1k chr05 561 560 434625 434970 F 0 0.00 1367 accept 0 ALIGNMENT 0 Y12-1i09.p1k chr11 62 839 517121 517120 F 778 0.00 1367 reject_low 7 ALIGNMENT 112 Y12-1i09.p1k chr12 835 1106 220691 220975 F 272 84.56 1367 reject_low 9 ALIGNMENT 217 Y12-1i09.p1k chr05 558 810 434968 435220 F 253 97.23 1367|3,0 accept 0 ALIGNMENT 116 Y12-1i09.p1k chr13 840 1106 372722 373002 F 267 85.02 1367 reject_low 15 ALIGNMENT 112 Y12-1i09.p1k chr16 989 840 62201 62349 C 150 94.00 1367 reject_low 21 ALIGNMENT 112 Y12-1i09.p1k chr12 840 989 481588 481736 F 150 94.00 1367 reject_low 20 ALIGNMENT 116 Y12-1i09.p1k chr13 840 1106 378310 378590 F 267 85.02 1367 reject_low 16 ALIGNMENT 0 Y12-1i09.p1k chr14 839 62 519472 519471 C 778 0.00 1367 reject_low 22 ALIGNMENT 119 Y12-1i09.p1k chr10 1106 840 483580 483860 C 267 85.39 1367 reject_low 12 ALIGNMENT 0 Y12-1i09.p1k chr02 839 62 221348 221347 C 778 0.00 1367 reject_low 8 ALIGNMENT 0 Y12-1i09.p1k chr01 62 839 160265 160264 F 778 0.00 1367 reject_low 18 ALIGNMENT 116 Y12-1i09.p1k chr04 1106 840 1095793 1096073 C 267 85.02 1367 reject_low 13 ALIGNMENT 41 Y12-1i09.p1k chr07 949 840 817278 817384 C 110 82.73 1367 reject_low 24 ALIGNMENT 154 Y12-1i09.p1k chr13 840 1134 357030 357335 F 295 87.80 1367 reject_low 4 ALIGNMENT 0 Y12-1i09.p1k chr04 839 62 1096074 1096073 C 778 0.00 1367 reject_low 13 ALIGNMENT 0 Y12-1i09.p1k chr13 460 62 363147 363146 C 399 0.00 1367 reject_low 1 ALIGNMENT 82 Y12-1i09.p1k chr13 544 461 363063 363146 C 84 100.00 1367 reject_low 1 ALIGNMENT 155 Y12-1i09.p1k chr07 1135 840 535214 535520 C 296 87.84 1367 reject_low 3 ALIGNMENT 0 Y12-1i09.p1k chr07 62 839 817424 817423 F 778 0.00 1367 reject_low 6 ALIGNMENT 79 Y12-1i09.p1k chr11 461 544 313034 313117 F 84 98.81 1367 reject_low 2 ALIGNMENT 154 Y12-1i09.p1k chr13 840 1134 362612 362917 F 295 87.80 1367 reject_low 5 ALIGNMENT 0 Y12-1i09.p1k chr16 839 62 62350 62349 C 778 0.00 1367 reject_low 21 ALIGNMENT 0 Y12-1i09.p1k chr11 62 460 313034 313033 F 399 0.00 1367 reject_low 2 ALIGNMENT 0 Y12-1i09.p1k chr15 839 62 118014 118013 C 778 0.00 1367 reject_low 17 ALIGNMENT 0 Y12-1i09.p1k chr12 62 834 220691 220690 F 773 0.00 1367 reject_low 9 ALIGNMENT 112 Y12-1i09.p1k chr01 840 989 165853 166001 F 150 94.00 1367 reject_low 19 ALIGNMENT 485 Y12-1i09.p1k chr05 23 562 434087 434626 F 540 98.89 1367|0,2 accept 0 ALIGNMENT 0 Y12-1i09.p1k chr11 545 805 313117 313116 F 261 0.00 1367 reject_low 2 ALIGNMENT 151 Y12-1i09.p1k chr07 840 1134 817424 817729 F 295 87.46 1367 reject_low 6 ALIGNMENT 0 Y12-1i09.p1k chr07 839 62 817385 817384 C 778 0.00 1367 reject_low 24 ALIGNMENT 0 Y12-1i09.p1k chr12 62 839 481588 481587 F 778 0.00 1367 reject_low 20 ALIGNMENT 66 Y12-1i09.p1k chr14 949 840 519363 519471 C 110 89.09 1367 reject_low 22 ALIGNMENT 66 Y12-1i09.p1k chr14 949 840 524929 525037 C 110 89.09 1367 reject_low 23 ALIGNMENT 0 Y12-1i09.p1k chr13 62 839 378310 378309 F 778 0.00 1367 reject_low 16 ALIGNMENT 116 Y12-1i09.p1k chr12 840 1106 215107 215387 F 267 85.02 1367 reject_low 14 ALIGNMENT 112 Y12-1i09.p1k chr01 840 989 160265 160413 F 150 94.00 1367 reject_low 18 ALIGNMENT 915 Y12-1i10.q1k chr15 40 1131 784740 785840 F 1092 95.97 1319 accept 0 ALIGNMENT 983 Y12-1i10.p1k chr15 1235 19 787662 788887 C 1217 95.07 1384 accept 0 ALIGNMENT 1010 Y12-1i11.q1k chr11 38 1246 422514 423735 F 1209 96.11 1370 accept 0 ALIGNMENT 970 Y12-1i11.p1k chr11 1255 20 425743 427003 C 1236 94.26 1417 accept 0 ALIGNMENT 257 Y12-1i12.p1k chr04 722 168 244954 245501 C 555 84.14 1594 accept 0 ALIGNMENT 478 Y12-1i13.p1k chr12 577 1209 489754 490390 F 633 92.89 1382 reject_low 2 ALIGNMENT 768 Y12-1i13.p1k chr12 229 1209 451419 452422 F 981 93.88 1382 reject_low 1 ALIGNMENT 958 Y12-1i13.q1k chr12 1084 36 465342 466405 C 1049 97.81 1276 accept 0 ALIGNMENT 0 Y12-1i13.p1k chr12 62 228 451419 451418 F 167 0.00 1382 reject_low 1 ALIGNMENT 958 Y12-1i13.q1k chr12 1084 36 456205 457268 C 1049 97.81 1276 reject_low 1 ALIGNMENT 0 Y12-1i13.p1k chr12 62 576 489754 489753 F 515 0.00 1382 reject_low 2 ALIGNMENT 913 Y12-1i13.p1k chr12 20 1209 460340 461559 F 1190 93.45 1382 accept 0 ALIGNMENT 886 Y12-1i14.p1k chr12 13 1012 43862 44852 F 1000 97.60 1443 accept 0 ALIGNMENT 869 Y12-1i14.q1k chr12 1140 39 46572 47694 C 1102 94.56 1330 accept 0 ALIGNMENT 967 Y12-1i16.p1k chr13 1109 16 775789 776891 C 1094 96.62 1319 accept 0 ALIGNMENT 860 Y12-1i16.q1k chr13 40 1040 771280 772291 F 1001 95.50 1285 accept 0 ALIGNMENT 970 Y12-1i17.p1k chr15 1185 18 847543 848723 C 1168 96.06 1352 accept 0 ALIGNMENT 195 Y12-1i17.q1k chr15 299 627 843844 844164 F 329 89.06 1202 accept 0 ALIGNMENT 324 Y12-1i18.q1k chr04 197 659 702763 703223 F 463 90.28 1034 accept 0 ALIGNMENT 1020 Y12-1i18.p1k chr04 1173 21 705474 706638 C 1153 96.88 1383 accept 0 ALIGNMENT 907 Y12-1i19.q1k chr11 35 1101 51593 52669 F 1067 96.44 1268 accept 0 ALIGNMENT 999 Y12-1i19.p1k chr11 1225 17 56058 57266 C 1209 95.29 1318 accept 0 ALIGNMENT 0 Y12-1i20.q1k chr06 409 901 15413 15412 F 493 0.00 1318 reject_low 1 ALIGNMENT 0 Y12-1i20.q1k chr14 404 901 17225 17224 F 498 0.00 1318 reject_low 2 ALIGNMENT 0 Y12-1i20.p1k chr10 850 336 721362 721361 C 515 0.00 1274 reject_low 4 ALIGNMENT 0 Y12-1i20.p1k chr10 315 62 721381 721380 C 254 0.00 1274 reject_low 4 ALIGNMENT 152 Y12-1i20.q1k chr04 41 403 18319 18681 F 363 80.99 1318 reject_low 3 ALIGNMENT 20 Y12-1i20.p1k chr10 335 316 721361 721380 C 20 100.00 1274 reject_low 4 ALIGNMENT 909 Y12-1i20.p1k chr10 18 1128 721062 722184 F 1111 95.41 1274 accept 0 ALIGNMENT 161 Y12-1i20.q1k chr14 41 403 16863 17225 F 363 81.82 1318 reject_low 2 ALIGNMENT 925 Y12-1i20.q1k chr10 1074 38 726393 727444 C 1037 97.01 1318 accept 0 ALIGNMENT 161 Y12-1i20.q1k chr06 38 408 15043 15413 F 371 81.40 1318 reject_low 1 ALIGNMENT 0 Y12-1i20.q1k chr04 404 901 18681 18680 F 498 0.00 1318 reject_low 3 ALIGNMENT 0 Y12-1i22.q1k chr13 218 62 21985 21984 C 157 0.00 1330 reject_low 1 ALIGNMENT 902 Y12-1i22.q1k chr09 1246 36 349023 350223 C 1211 92.57 1330 accept 0 ALIGNMENT 24 Y12-1i22.q1k chr12 207 242 837500 837535 F 36 94.44 1330 reject_low 2 ALIGNMENT 0 Y12-1i22.q1k chr12 62 206 837500 837499 F 145 0.00 1330 reject_low 2 ALIGNMENT 0 Y12-1i22.q1k chr12 243 915 837535 837534 F 673 0.00 1330 reject_low 2 ALIGNMENT 0 Y12-1i22.q1k chr11 208 62 78840 78839 C 147 0.00 1330 reject_low 5 ALIGNMENT 0 Y12-1i22.q1k chr13 915 253 239355 239354 C 663 0.00 1330 reject_low 4 ALIGNMENT 0 Y12-1i22.q1k chr13 915 266 21939 21938 C 650 0.00 1330 reject_low 1 ALIGNMENT 22 Y12-1i22.q1k chr11 243 209 78805 78839 C 35 94.29 1330 reject_low 5 ALIGNMENT 0 Y12-1i22.q1k chr04 62 211 1385453 1385452 F 150 0.00 1330 reject_low 3 ALIGNMENT 0 Y12-1i22.q1k chr11 915 244 78806 78805 C 672 0.00 1330 reject_low 5 ALIGNMENT 0 Y12-1i22.q1k chr13 216 62 239390 239389 C 155 0.00 1330 reject_low 4 ALIGNMENT 21 Y12-1i22.q1k chr13 265 219 21938 21984 C 47 89.36 1330 reject_low 1 ALIGNMENT 1013 Y12-1i22.p1k chr09 19 1265 345809 347064 F 1247 94.23 1312 accept 0 ALIGNMENT 0 Y12-1i22.q1k chr04 253 915 1385493 1385492 F 663 0.00 1330 reject_low 3 ALIGNMENT 24 Y12-1i22.q1k chr13 252 217 239354 239389 C 36 97.22 1330 reject_low 4 ALIGNMENT 24 Y12-1i22.q1k chr04 212 252 1385453 1385493 F 41 92.68 1330 reject_low 3 ALIGNMENT 1009 Y12-1i23.q1k chr13 58 1249 100938 102148 F 1192 95.22 1295 accept 0 ALIGNMENT 958 Y12-1i23.p1k chr13 1171 19 103885 105021 C 1153 95.92 1317 accept 0 ALIGNMENT 1057 Y12-1i24.p1k chr12 1179 18 888155 889316 C 1162 97.68 1270 accept 0 ALIGNMENT 992 Y12-1i24.q1k chr12 36 1188 885148 886304 F 1153 95.92 1279 accept 0 ALIGNMENT 919 Y12-1j01.q1k chr13 1122 37 906214 907312 C 1086 95.30 1269 accept 0 ALIGNMENT 963 Y12-1j01.p1k chr13 18 1193 901061 902249 F 1176 95.15 1359 accept 0 ALIGNMENT 1003 Y12-1j02.p1k chr02 24 1187 602080 603252 F 1164 96.82 1379 accept_chi 0 ALIGNMENT 964 Y12-1j02.q1k chr15 41 1162 364576 365716 F 1122 96.17 1266 accept_chi 1 ALIGNMENT 977 Y12-1j03.p1k chr09 21 1158 71876 73041 F 1138 96.57 1335 accept 0 ALIGNMENT 994 Y12-1j03.q1k chr09 1254 29 73658 74898 C 1226 94.70 1341 accept 0 ALIGNMENT 26 Y12-1j04.q1k chr10 458 427 606325 606356 C 32 93.75 1282 reject_low 1 ALIGNMENT 0 Y12-1j04.q1k chr10 426 62 606357 606356 C 365 0.00 1282 reject_low 1 ALIGNMENT 0 Y12-1j04.q1k chr10 783 459 606326 606325 C 325 0.00 1282 reject_low 1 ALIGNMENT 942 Y12-1j04.q1k chr10 1098 30 606034 607118 C 1069 96.45 1282 accept 0 ALIGNMENT 920 Y12-1j04.p1k chr10 23 1128 600911 602034 F 1106 95.75 1382 accept 0 ALIGNMENT 821 Y12-1j05.q1k chr15 35 943 599804 600714 F 909 98.68 1328 ambiguous_trans 5 ALIGNMENT 0 Y12-1j05.q1k chr16 869 791 850354 850353 C 79 0.00 1328 ambiguous_trans_ua 24 ALIGNMENT 785 Y12-1j05.q1k chr07 35 963 540753 541689 F 929 96.66 1328 ambiguous_trans 7 ALIGNMENT 756 Y12-1j05.q1k chr13 943 35 372716 373632 C 909 96.37 1328 ambiguous_trans 10 ALIGNMENT 537 Y12-1j05.q1k chr05 963 35 443393 444328 C 929 87.84 1328 ambiguous_trans 20 ALIGNMENT 677 Y12-1j05.q1k chr16 963 35 850625 851561 C 929 92.79 1328 ambiguous_trans 11 ALIGNMENT 944 Y12-1j05.p1k chr05 1221 19 489574 490814 C 1203 94.01 1386 accept 0 ALIGNMENT 657 Y12-1j05.q1k chr16 35 943 849400 850316 F 909 92.74 1328 ambiguous_trans 15 ALIGNMENT 785 Y12-1j05.q1k chr10 35 963 482950 483886 F 929 96.66 1328 ambiguous_trans 8 ALIGNMENT 638 Y12-1j05.q1k chr05 770 35 492691 493427 C 736 97.42 1328 ambiguous_trans 16 ALIGNMENT 821 Y12-1j05.q1k chr07 943 35 817418 818328 C 909 98.68 1328 ambiguous_trans 4 ALIGNMENT 756 Y12-1j05.q1k chr12 943 35 215101 216017 C 909 96.37 1328 ambiguous_trans_ua 9 ALIGNMENT 0 Y12-1j05.q1k chr05 869 771 492692 492691 C 99 0.00 1328 ambiguous_trans 16 ALIGNMENT 188 Y12-1j05.q1k chr01 963 633 165827 166163 C 331 87.61 1328 ambiguous_trans 22 ALIGNMENT 612 Y12-1j05.q1k chr15 35 964 122691 123628 F 930 90.43 1328 ambiguous_trans 17 ALIGNMENT 0 Y12-1j05.q1k chr01 632 62 166164 166163 C 571 0.00 1328 ambiguous_trans 22 ALIGNMENT 524 Y12-1j05.q1k chr13 35 918 201320 202209 F 884 88.35 1328 ambiguous_trans 21 ALIGNMENT 21 Y12-1j05.q1k chr05 632 659 443365 443392 F 28 92.86 1328 ambiguous_trans_ua 25 ALIGNMENT 28 Y12-1j05.q1k chr16 790 688 850353 850453 C 103 79.61 1328 ambiguous_trans_ua 24 ALIGNMENT 844 Y12-1j05.q1k chr02 35 963 226025 226955 F 929 98.71 1328 ambiguous_trans 1 ALIGNMENT 657 Y12-1j05.q1k chr04 35 943 1100751 1101667 F 909 92.74 1328 ambiguous_trans 14 ALIGNMENT 814 Y12-1j05.q1k chr14 963 35 96610 97540 C 929 97.63 1328 ambiguous_trans 3 ALIGNMENT 546 Y12-1j05.q1k chr12 966 35 475972 476910 C 932 88.09 1328 ambiguous_trans 19 ALIGNMENT 0 Y12-1j05.q1k chr07 62 829 817278 817277 F 768 0.00 1328 ambiguous_trans 23 ALIGNMENT 50 Y12-1j05.q1k chr07 830 937 817278 817383 F 108 83.33 1328 ambiguous_trans 23 ALIGNMENT 0 Y12-1j05.q1k chr05 660 869 443392 443391 F 210 0.00 1328 ambiguous_trans_ua 25 ALIGNMENT 683 Y12-1j05.q1k chr08 943 35 543630 544540 C 909 93.62 1328 ambiguous_trans 12 ALIGNMENT 0 Y12-1j05.q1k chr16 687 62 850454 850453 C 626 0.00 1328 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-1j05.q1k chr05 62 631 443365 443364 F 570 0.00 1328 ambiguous_trans_ua 25 ALIGNMENT 818 Y12-1j05.q1k chr02 35 943 264562 265472 F 909 98.57 1328 ambiguous_trans 6 ALIGNMENT 545 Y12-1j05.q1k chr01 969 35 160233 161174 C 935 87.91 1328 ambiguous_trans 18 ALIGNMENT 683 Y12-1j05.q1k chr13 35 943 189153 190063 F 909 93.62 1328 ambiguous_trans 13 ALIGNMENT 838 Y12-1j05.q1k chr13 963 35 357004 357934 C 929 98.49 1328 ambiguous_trans 2 ALIGNMENT 354 Y12-1j07.q1k chr12 804 176 464211 464815 C 629 87.92 1084 accept 1 ALIGNMENT 954 Y12-1j07.p1k chr12 30 1199 460585 461782 F 1170 94.79 1386 accept 1 ALIGNMENT 675 Y12-1j07.p1k chr12 348 1134 489754 490539 F 787 95.43 1386 reject_low 2 ALIGNMENT 954 Y12-1j07.p1k chr12 30 1199 451448 452645 F 1170 94.79 1386 accept 0 ALIGNMENT 0 Y12-1j07.p1k chr12 62 347 489754 489753 F 286 0.00 1386 reject_low 2 ALIGNMENT 354 Y12-1j07.q1k chr12 804 176 455074 455678 C 629 87.92 1084 accept 0 ALIGNMENT 1020 Y12-1j08.q1k chr10 1217 39 492631 493820 C 1179 96.52 1346 accept 0 ALIGNMENT 964 Y12-1j08.p1k chr10 27 1174 489793 490943 F 1148 95.99 1407 accept 0 ALIGNMENT 129 Y12-1j09.p1k chr08 1071 893 91578 91757 C 179 92.18 1363 reject_low 2 ALIGNMENT 0 Y12-1j09.p1k chr08 892 62 91758 91757 C 831 0.00 1363 reject_low 2 ALIGNMENT 22 Y12-1j09.p1k chr06 819 781 137869 137907 C 39 87.18 1363 reject_low 55 ALIGNMENT 0 Y12-1j09.p1k chr03 811 647 149514 149513 C 165 0.00 1363 reject_low 25 ALIGNMENT 0 Y12-1j09.p1k chr10 681 811 204036 204035 F 131 0.00 1363 reject_low 16 ALIGNMENT 37 Y12-1j09.p1k chr07 734 819 817416 817502 F 86 84.88 1363 reject_low 30 ALIGNMENT 0 Y12-1j09.p1k chr04 62 346 519312 519311 F 285 0.00 1363 reject_low 15 ALIGNMENT 67 Y12-1j09.p1k chr03 398 680 142798 143078 F 283 77.74 1363 reject_low 28 ALIGNMENT 33 Y12-1j09.p1k chr06 414 356 143869 143928 C 59 89.83 1363 reject_low 57 ALIGNMENT 0 Y12-1j09.p1k chr03 679 348 295363 295356 C 332 0.00 1363 reject_bad_break 0 ALIGNMENT 277 Y12-1j09.p1k chr06 679 357 143535 143856 C 323 97.83 1363 reject_low 54 ALIGNMENT 0 Y12-1j09.p1k chr01 62 720 160244 160243 F 659 0.00 1363 reject_low 26 ALIGNMENT 0 Y12-1j09.p1k chr06 725 62 143857 143856 C 664 0.00 1363 reject_low 47 ALIGNMENT 0 Y12-1j09.p1k chr05 346 62 62475 62474 C 285 0.00 1363 reject_low 8 ALIGNMENT 0 Y12-1j09.p1k chr15 62 724 704073 704072 F 663 0.00 1363 reject_low 46 ALIGNMENT 43 Y12-1j09.p1k chr15 977 892 710025 710109 C 86 86.05 1363|2,0 reject_low 1 ALIGNMENT 0 Y12-1j09.p1k chr06 416 415 137903 143868 C 2 0.00 1363 reject_low 57 ALIGNMENT 29 Y12-1j09.p1k chr09 819 723 246446 246542 C 97 81.44 1363 reject_low 36 ALIGNMENT 0 Y12-1j09.p1k chr06 356 62 138230 138229 C 295 0.00 1363 reject_low 55 ALIGNMENT 118 Y12-1j09.p1k chr03 819 680 295223 295362 C 140 97.86 1363 reject_bad_break 0 ALIGNMENT 0 Y12-1j09.p1k chr03 811 690 151510 151509 C 122 0.00 1363 reject_low 23 ALIGNMENT 0 Y12-1j09.p1k chr05 62 724 431495 431494 F 663 0.00 1363 reject_low 45 ALIGNMENT 0 Y12-1j09.p1k chr15 724 62 665138 665137 C 663 0.00 1363 reject_low 40 ALIGNMENT 0 Y12-1j09.p1k chr12 768 62 947095 947094 C 707 0.00 1363 reject_low 44 ALIGNMENT 0 Y12-1j09.p1k chr15 891 62 710110 710109 C 830 0.00 1363 reject_low 1 ALIGNMENT 32 Y12-1j09.p1k chr12 723 819 731677 731773 F 97 82.47 1363 reject_low 34 ALIGNMENT 0 Y12-1j09.p1k chr03 811 680 295000 294999 C 132 0.00 1363 reject_low 33 ALIGNMENT 30 Y12-1j09.p1k chr03 819 769 90666 90715 C 51 90.20 1363 reject_low 41 ALIGNMENT 54 Y12-1j09.p1k chr06 676 417 137658 137902 C 260 78.85 1363 reject_low 57 ALIGNMENT 282 Y12-1j09.p1k chr10 682 357 538014 538338 C 326 98.16 1363 reject_low 18 ALIGNMENT 129 Y12-1j09.p1k chr10 1067 893 203514 203689 C 175 92.57 1363 reject_low 5 ALIGNMENT 32 Y12-1j09.p1k chr03 819 726 151744 151838 C 94 81.91 1363 reject_low 35 ALIGNMENT 30 Y12-1j09.p1k chr12 819 769 947045 947094 C 51 90.20 1363 reject_low 44 ALIGNMENT 0 Y12-1j09.p1k chr03 62 397 142798 142797 F 336 0.00 1363 reject_low 28 ALIGNMENT 0 Y12-1j09.p1k chr03 681 811 143078 143077 F 131 0.00 1363 reject_low 28 ALIGNMENT 0 Y12-1j09.p1k chr01 62 353 165834 165833 F 292 0.00 1363 reject_low 22 ALIGNMENT 0 Y12-1j09.p1k chr08 62 346 389180 389179 F 285 0.00 1363 reject_low 6 ALIGNMENT 301 Y12-1j09.p1k chr03 347 22 295357 295681 C 326 98.16 1363 reject_bad_break 0 ALIGNMENT 0 Y12-1j09.p1k chr03 342 62 90773 90772 C 281 0.00 1363 reject_low 13 ALIGNMENT 35 Y12-1j09.p1k chr03 721 811 124136 124227 F 91 83.52 1363 reject_low 29 ALIGNMENT 0 Y12-1j09.p1k chr13 62 719 168353 168352 F 658 0.00 1363 reject_low 37 ALIGNMENT 0 Y12-1j09.p1k chr15 346 62 665147 665146 C 285 0.00 1363 reject_low 11 ALIGNMENT 0 Y12-1j09.p1k chr07 369 62 817388 817387 C 308 0.00 1363 reject_low 20 ALIGNMENT 0 Y12-1j09.p1k chr13 680 811 168681 168680 F 132 0.00 1363 reject_low 12 ALIGNMENT 0 Y12-1j09.p1k chr15 680 724 704397 709700 F 45 0.00 1363 reject_low 52 ALIGNMENT 0 Y12-1j09.p1k chr04 681 811 519644 519643 F 131 0.00 1363 reject_low 15 ALIGNMENT 283 Y12-1j09.p1k chr12 680 347 941188 941520 C 334 97.31 1363 reject_low 19 ALIGNMENT 0 Y12-1j09.p1k chr15 62 346 709692 709691 F 285 0.00 1363 reject_low 10 ALIGNMENT 0 Y12-1j09.p1k chr05 62 346 431486 431485 F 285 0.00 1363 reject_low 7 ALIGNMENT 25 Y12-1j09.p1k chr06 819 726 138137 138229 C 94 80.85 1363 reject_low 54 ALIGNMENT 305 Y12-1j09.p1k chr15 347 679 709692 710024 F 333 99.40 1363 reject_low 10 ALIGNMENT 109 Y12-1j09.p1k chr15 1142 973 703889 704063 C 170 90.00 1363|0,3 reject_low 1 ALIGNMENT 298 Y12-1j09.p1k chr04 347 680 519312 519644 F 334 98.80 1363 reject_low 15 ALIGNMENT 0 Y12-1j09.p1k chr06 725 680 138230 143534 C 46 0.00 1363 reject_low 54 ALIGNMENT 28 Y12-1j09.p1k chr15 819 725 665043 665137 C 95 81.05 1363 reject_low 40 ALIGNMENT 0 Y12-1j09.p1k chr10 62 528 537832 537831 F 467 0.00 1363 reject_low 48 ALIGNMENT 0 Y12-1j09.p1k chr10 422 62 204237 204236 C 361 0.00 1363 reject_low 5 ALIGNMENT 0 Y12-1j09.p1k chr12 346 62 941521 941520 C 285 0.00 1363 reject_low 19 ALIGNMENT 297 Y12-1j09.p1k chr08 346 679 91762 92095 F 334 98.50 1363 reject_low 14 ALIGNMENT 0 Y12-1j09.p1k chr12 346 62 947148 947147 C 285 0.00 1363 reject_low 53 ALIGNMENT 0 Y12-1j09.p1k chr10 768 62 538296 538295 C 707 0.00 1363 reject_low 43 ALIGNMENT 39 Y12-1j09.p1k chr01 721 819 160244 160343 F 99 83.84 1363 reject_low 26 ALIGNMENT 0 Y12-1j09.p1k chr15 680 811 710024 710023 F 132 0.00 1363 reject_low 10 ALIGNMENT 0 Y12-1j09.p1k chr10 647 811 537948 537947 F 165 0.00 1363 reject_low 48 ALIGNMENT 277 Y12-1j09.p1k chr06 679 357 137908 138229 C 323 97.83 1363 reject_low 55 ALIGNMENT 0 Y12-1j09.p1k chr01 680 811 166163 166162 F 132 0.00 1363 reject_low 22 ALIGNMENT 0 Y12-1j09.p1k chr06 355 62 143929 143928 C 294 0.00 1363 reject_low 57 ALIGNMENT 782 Y12-1j09.q1k chr03 36 1145 292110 293252 F 1110 92.97 1341 reject_bad_break 0 ALIGNMENT 0 Y12-1j09.p1k chr03 62 720 168600 168599 F 659 0.00 1363 reject_low 27 ALIGNMENT 0 Y12-1j09.p1k chr09 346 62 246550 246549 C 285 0.00 1363 reject_low 9 ALIGNMENT 0 Y12-1j09.p1k chr03 768 62 90716 90715 C 707 0.00 1363 reject_low 41 ALIGNMENT 34 Y12-1j09.p1k chr08 725 819 91772 91866 F 95 83.16 1363 reject_low 32 ALIGNMENT 0 Y12-1j09.p1k chr10 794 62 204234 204233 C 733 0.00 1363 reject_low 51 ALIGNMENT 25 Y12-1j09.p1k chr06 819 726 143764 143856 C 94 80.85 1363 reject_low 47 ALIGNMENT 0 Y12-1j09.p1k chr13 62 346 168349 168348 F 285 0.00 1363 reject_low 12 ALIGNMENT 207 Y12-1j09.p1k chr01 354 679 165834 166163 F 326 90.49 1363 reject_low 22 ALIGNMENT 0 Y12-1j09.p1k chr03 811 680 90438 90437 C 132 0.00 1363 reject_low 13 ALIGNMENT 292 Y12-1j09.p1k chr12 356 679 731679 732002 F 324 99.07 1363 reject_low 17 ALIGNMENT 57 Y12-1j09.p1k chr10 625 423 204036 204236 C 203 80.30 1363 reject_low 5 ALIGNMENT 103 Y12-1j09.p1k chr03 343 684 124127 124467 F 342 80.12 1363 reject_low 24 ALIGNMENT 0 Y12-1j09.p1k chr06 780 680 137908 137907 C 101 0.00 1363 reject_low 55 ALIGNMENT 0 Y12-1j09.p1k chr10 62 724 203713 203712 F 663 0.00 1363 reject_low 50 ALIGNMENT 23 Y12-1j09.p1k chr04 725 819 519321 519414 F 95 80.00 1363 reject_low 49 ALIGNMENT 90 Y12-1j09.q1k chr03 948 1145 12257 12463 F 198 84.85 1341 reject_low 4 ALIGNMENT 106 Y12-1j09.p1k chr03 689 357 151509 151838 C 333 81.38 1363 reject_low 23 ALIGNMENT 0 Y12-1j09.p1k chr07 481 811 817532 817531 F 331 0.00 1363 reject_low 31 ALIGNMENT 0 Y12-1j09.p1k chr15 811 681 664814 664813 C 131 0.00 1363 reject_low 11 ALIGNMENT 0 Y12-1j09.p1k chr03 680 811 168928 168927 F 132 0.00 1363 reject_low 21 ALIGNMENT 36 Y12-1j09.p1k chr03 721 819 168600 168699 F 99 82.83 1363 reject_low 27 ALIGNMENT 0 Y12-1j09.p1k chr07 811 680 817080 817079 C 132 0.00 1363 reject_low 20 ALIGNMENT 0 Y12-1j09.p1k chr03 62 353 168602 168601 F 292 0.00 1363 reject_low 21 ALIGNMENT 25 Y12-1j09.p1k chr05 725 819 431495 431589 F 95 80.00 1363 reject_low 45 ALIGNMENT 308 Y12-1j09.p1k chr08 347 679 389180 389512 F 333 99.70 1363 reject_low 6 ALIGNMENT 23 Y12-1j09.p1k chr10 725 819 203713 203806 F 95 80.00 1363 reject_low 50 ALIGNMENT 0 Y12-1j09.p1k chr15 975 976 704061 710026 C 0 0.00 1363 reject_low 1 ALIGNMENT 96 Y12-1j09.q1k chr03 948 1145 199414 199618 F 198 85.86 1341 reject_low 3 ALIGNMENT 30 Y12-1j09.p1k chr12 819 769 941418 941467 C 51 90.20 1363 reject_low 53 ALIGNMENT 0 Y12-1j09.q1k chr03 62 947 12257 12256 F 886 0.00 1341 reject_low 4 ALIGNMENT 0 Y12-1j09.p1k chr10 62 346 203704 203703 F 285 0.00 1363 reject_low 16 ALIGNMENT 0 Y12-1j09.p1k chr08 62 724 389189 389188 F 663 0.00 1363 reject_low 39 ALIGNMENT 305 Y12-1j09.p1k chr05 680 347 62141 62474 C 334 99.40 1363 reject_low 8 ALIGNMENT 0 Y12-1j09.q1k chr03 62 947 199414 199413 F 886 0.00 1341 reject_low 3 ALIGNMENT 0 Y12-1j09.p1k chr03 346 62 149807 149806 C 285 0.00 1363 reject_low 25 ALIGNMENT 42 Y12-1j09.p1k chr10 529 646 537832 537948 F 118 81.36 1363 reject_low 48 ALIGNMENT 272 Y12-1j09.p1k chr03 354 679 168602 168928 F 326 96.93 1363 reject_low 21 ALIGNMENT 25 Y12-1j09.p1k chr15 725 819 704073 704167 F 95 80.00 1363 reject_low 46 ALIGNMENT 0 Y12-1j09.p1k chr09 722 62 246543 246542 C 661 0.00 1363 reject_low 36 ALIGNMENT 0 Y12-1j09.p1k chr05 682 811 431820 431819 F 130 0.00 1363 reject_low 7 ALIGNMENT 0 Y12-1j09.p1k chr08 62 345 91762 91761 F 284 0.00 1363 reject_low 14 ALIGNMENT 0 Y12-1j09.p1k chr12 62 355 731679 731678 F 294 0.00 1363 reject_low 17 ALIGNMENT 302 Y12-1j09.p1k chr15 680 347 664813 665146 C 334 99.10 1363 reject_low 11 ALIGNMENT 0 Y12-1j09.p1k chr05 811 681 62142 62141 C 131 0.00 1363 reject_low 8 ALIGNMENT 62 Y12-1j09.p1k chr07 367 480 817418 817532 F 114 86.84 1363 reject_low 31 ALIGNMENT 0 Y12-1j09.p1k chr03 356 62 151839 151838 C 295 0.00 1363 reject_low 23 ALIGNMENT 0 Y12-1j09.p1k chr12 768 680 941468 946815 C 89 0.00 1363 reject_low 53 ALIGNMENT 0 Y12-1j09.p1k chr07 62 366 817418 817417 F 305 0.00 1363 reject_low 31 ALIGNMENT 0 Y12-1j09.p1k chr03 725 62 151839 151838 C 664 0.00 1363 reject_low 35 ALIGNMENT 305 Y12-1j09.p1k chr15 347 679 704064 704396 F 333 99.40 1363 reject_low 52 ALIGNMENT 59 Y12-1j09.p1k chr03 679 356 294999 295317 C 324 76.54 1363 reject_low 33 ALIGNMENT 25 Y12-1j09.p1k chr15 725 819 709701 709795 F 95 80.00 1363 reject_low 52 ALIGNMENT 0 Y12-1j09.p1k chr08 680 811 389512 389511 F 132 0.00 1363 reject_low 6 ALIGNMENT 0 Y12-1j09.p1k chr04 62 724 519321 519320 F 663 0.00 1363 reject_low 49 ALIGNMENT 0 Y12-1j09.p1k chr12 811 681 941189 941188 C 131 0.00 1363 reject_low 19 ALIGNMENT 0 Y12-1j09.p1k chr03 62 720 124136 124135 F 659 0.00 1363 reject_low 29 ALIGNMENT 0 Y12-1j09.p1k chr12 680 811 732002 732001 F 132 0.00 1363 reject_low 17 ALIGNMENT 0 Y12-1j09.p1k chr15 62 346 704064 704063 F 285 0.00 1363 reject_low 52 ALIGNMENT 282 Y12-1j09.p1k chr12 679 347 946816 947147 C 333 97.30 1363 reject_low 53 ALIGNMENT 22 Y12-1j09.p1k chr10 819 795 204209 204233 C 25 96.00 1363 reject_low 51 ALIGNMENT 302 Y12-1j09.p1k chr13 347 679 168349 168681 F 333 99.10 1363 reject_low 12 ALIGNMENT 305 Y12-1j09.p1k chr09 679 347 246217 246549 C 333 99.40 1363 reject_low 9 ALIGNMENT 28 Y12-1j09.p1k chr05 819 725 62371 62465 C 95 81.05 1363 reject_low 38 ALIGNMENT 0 Y12-1j09.p1k chr03 685 811 124467 124466 F 127 0.00 1363 reject_low 24 ALIGNMENT 0 Y12-1j09.p1k chr10 356 62 538339 538338 C 295 0.00 1363 reject_low 18 ALIGNMENT 0 Y12-1j09.p1k chr07 768 62 817358 817357 C 707 0.00 1363 reject_low 42 ALIGNMENT 0 Y12-1j09.p1k chr06 356 62 143857 143856 C 295 0.00 1363 reject_low 54 ALIGNMENT 295 Y12-1j09.p1k chr10 347 680 203704 204036 F 334 98.50 1363 reject_low 16 ALIGNMENT 0 Y12-1j09.p1k chr12 62 722 731677 731676 F 661 0.00 1363 reject_low 34 ALIGNMENT 28 Y12-1j09.p1k chr08 725 819 389189 389283 F 95 81.05 1363 reject_low 39 ALIGNMENT 0 Y12-1j09.p1k chr05 724 62 62466 62465 C 663 0.00 1363 reject_low 38 ALIGNMENT 30 Y12-1j09.p1k chr07 819 769 817308 817357 C 51 90.20 1363 reject_low 42 ALIGNMENT 0 Y12-1j09.p1k chr06 811 677 137659 137658 C 135 0.00 1363 reject_low 57 ALIGNMENT 0 Y12-1j09.p1k chr03 355 62 295318 295317 C 294 0.00 1363 reject_low 33 ALIGNMENT 0 Y12-1j09.p1k chr03 62 342 124127 124126 F 281 0.00 1363 reject_low 24 ALIGNMENT 0 Y12-1j09.p1k chr01 62 343 160236 160235 F 282 0.00 1363 reject_low 56 ALIGNMENT 282 Y12-1j09.p1k chr03 679 343 90437 90772 C 337 97.03 1363 reject_low 13 ALIGNMENT 39 Y12-1j09.p1k chr01 721 819 165832 165931 F 99 83.84 1363 reject_low 56 ALIGNMENT 30 Y12-1j09.p1k chr10 819 769 538246 538295 C 51 90.20 1363 reject_low 43 ALIGNMENT 0 Y12-1j09.p1k chr01 680 720 160576 165831 F 41 0.00 1363 reject_low 56 ALIGNMENT 0 Y12-1j09.p1k chr08 62 724 91772 91771 F 663 0.00 1363 reject_low 32 ALIGNMENT 0 Y12-1j09.p1k chr09 811 680 246218 246217 C 132 0.00 1363 reject_low 9 ALIGNMENT 276 Y12-1j09.p1k chr07 679 370 817079 817387 C 310 99.03 1363 reject_low 20 ALIGNMENT 0 Y12-1j09.p1k chr07 62 733 817416 817415 F 672 0.00 1363 reject_low 30 ALIGNMENT 26 Y12-1j09.p1k chr13 720 819 168353 168452 F 100 80.00 1363 reject_low 37 ALIGNMENT 303 Y12-1j09.p1k chr05 347 681 431486 431820 F 335 99.10 1363 reject_low 7 ALIGNMENT 79 Y12-1j09.p1k chr03 646 347 149513 149806 C 300 79.33 1363 reject_low 25 ALIGNMENT 0 Y12-1j09.p1k chr08 680 811 92095 92094 F 132 0.00 1363 reject_low 14 ALIGNMENT 208 Y12-1j09.p1k chr01 344 679 160236 160575 F 336 89.88 1363 reject_low 56 ALIGNMENT 0 Y12-1j09.p1k chr10 892 626 203690 204035 C 267 0.00 1363 reject_low 5 ALIGNMENT 0 Y12-1j09.p1k chr10 811 683 538015 538014 C 129 0.00 1363 reject_low 18 ALIGNMENT 1000 Y12-1j10.q1k chr02 38 1199 593865 595045 F 1162 96.13 1329 accept 0 ALIGNMENT 918 Y12-1j10.p1k chr02 1137 22 597114 598238 C 1116 94.98 1395 accept 0 ALIGNMENT 997 Y12-1j11.p1k chr13 18 1170 212769 213922 F 1153 96.53 1411 accept 0 ALIGNMENT 926 Y12-1j11.q1k chr13 1178 26 217000 218166 C 1153 94.80 1329 accept 0 ALIGNMENT 931 Y12-1j12.q1k chr03 1122 40 31186 32274 C 1083 96.31 1337 accept 0 ALIGNMENT 845 Y12-1j12.p1k chr03 22 1013 28145 29151 F 992 96.07 1312 accept 0 ALIGNMENT 927 Y12-1j13.p1k chr12 1104 20 155110 156208 C 1085 96.04 1359 accept 0 ALIGNMENT 645 Y12-1j13.q1k chr12 38 950 150609 151540 F 913 92.11 1220 accept 0 ALIGNMENT 0 Y12-1j15.p1k chr12 62 94 489754 489753 F 33 0.00 1305 reject_low 2 ALIGNMENT 1009 Y12-1j15.p1k chr12 16 1111 460842 461954 F 1096 98.18 1305 accept 1 ALIGNMENT 1009 Y12-1j15.p1k chr12 16 1111 451705 452817 F 1096 98.18 1305 accept 0 ALIGNMENT 920 Y12-1j15.q1k chr12 1125 30 454453 455561 C 1096 95.44 1326 accept 0 ALIGNMENT 761 Y12-1j15.p1k chr12 95 884 489754 490543 F 790 98.99 1305 reject_low 2 ALIGNMENT 920 Y12-1j15.q1k chr12 1125 30 463590 464698 C 1096 95.44 1326 accept 1 ALIGNMENT 474 Y12-1j16.q1k chr10 516 27 136085 136575 C 490 98.98 516 accept_chi 0 ALIGNMENT 36 Y12-1j16.p1k vc_4 545 510 5812 5847 C 36 100.00 545 reject_low 4 ALIGNMENT 0 Y12-1j16.p1k chr10 510 545 136575 136574 F 36 0.00 545 accept_chi 1 ALIGNMENT 0 Y12-1j16.p1k vc_3 62 509 2496 2495 F 448 0.00 545 reject_low 3 ALIGNMENT 473 Y12-1j16.p1k chr10 25 509 136091 136575 F 485 99.18 545 accept_chi 1 ALIGNMENT 0 Y12-1j16.p1k vc_4 509 62 5848 5847 C 448 0.00 545 reject_low 4 ALIGNMENT 36 Y12-1j16.p1k vc_1 510 545 2496 2531 F 36 100.00 545 reject_low 2 ALIGNMENT 0 Y12-1j16.p1k vc_1 62 509 2496 2495 F 448 0.00 545 reject_low 2 ALIGNMENT 36 Y12-1j16.p1k vc_3 510 545 2496 2531 F 36 100.00 545 reject_low 3 ALIGNMENT 999 Y12-1j17.p1k chr09 21 1117 348922 350022 F 1097 97.63 1370 reject_bad_break 0 ALIGNMENT 0 Y12-1j17.p1k chr09 1118 1174 350023 350062 F 57 0.00 1370 reject_bad_break 0 ALIGNMENT 930 Y12-1j17.q1k chr09 1077 32 353741 354800 C 1046 97.61 1289 reject_bad_break 0 ALIGNMENT 21 Y12-1j17.p1k chr09 1175 1256 350063 350151 F 82 79.27 1370 reject_bad_break 0 ALIGNMENT 978 Y12-1j18.q1k chr15 31 1155 141302 142442 F 1125 96.89 1296 accept 0 ALIGNMENT 920 Y12-1j18.p1k chr15 1132 23 144619 145750 C 1110 95.95 1381 accept 0 ALIGNMENT 952 Y12-1j19.p1k chr12 21 1105 198854 199945 F 1085 95.58 1299 accept_chi 0 ALIGNMENT 936 Y12-1j19.q1k chr13 41 1191 652325 653471 F 1151 94.79 1357 accept_chi 1 ALIGNMENT 992 Y12-1j20.q1k chr14 39 1272 667038 668285 F 1234 94.81 1351 accept 0 ALIGNMENT 1023 Y12-1j20.p1k chr14 1204 25 670428 671626 C 1180 96.61 1351 accept 0 ALIGNMENT 210 Y12-1j21.p1k chr07 456 53 602346 602742 C 404 86.14 1609 accept 0 ALIGNMENT 924 Y12-1j21.q1k chr07 35 1080 596849 597894 F 1046 96.56 1351 accept 0 ALIGNMENT 1007 Y12-1j23.q1k chr02 39 1191 37685 38844 F 1153 96.44 1296 accept 0 ALIGNMENT 970 Y12-1j23.p1k chr02 1226 24 41223 42434 C 1203 94.68 1277 accept 0 ALIGNMENT 822 Y12-1j24.p1k chr08 27 1023 183367 184386 F 997 95.99 1302 accept 0 ALIGNMENT 886 Y12-1j24.q1k chr08 976 36 187434 188372 C 941 99.15 1293 accept 0 ALIGNMENT 944 Y12-1k01.p1k chr14 1185 18 27463 28630 C 1168 95.12 1337 accept 0 ALIGNMENT 1015 Y12-1k01.q1k chr14 36 1208 23954 25129 F 1173 96.76 1308 accept 0 ALIGNMENT 1015 Y12-1k04.p1k chr14 18 1226 570980 572194 F 1209 95.37 1352 reject_low 1 ALIGNMENT 973 Y12-1k04.q1k chr14 30 1145 596429 597559 F 1116 96.42 1295 accept 0 ALIGNMENT 1025 Y12-1k04.p1k chr14 1218 18 600067 601273 C 1201 95.84 1352 accept 0 ALIGNMENT 1005 Y12-1k05.q1k chr12 38 1207 905114 906298 F 1170 96.92 1321 accept 0 ALIGNMENT 972 Y12-1k05.p1k chr12 1176 18 905682 906879 C 1159 96.20 1354 accept 0 ALIGNMENT 898 Y12-1k06.q1k chr11 28 1081 435932 437001 F 1054 96.77 1299 accept 0 ALIGNMENT 876 Y12-1k06.p1k chr11 1246 13 439263 440481 C 1234 92.87 1406 accept 0 ALIGNMENT 686 Y12-1k07.q1k chr12 148 1040 452436 453341 F 893 92.61 1181 accept 0 ALIGNMENT 686 Y12-1k07.q1k chr12 148 1040 461573 462478 F 893 92.61 1181 accept 1 ALIGNMENT 924 Y12-1k07.p1k chr12 1034 21 455467 456497 C 1014 97.83 1322 accept 0 ALIGNMENT 924 Y12-1k07.p1k chr12 1034 21 464604 465634 C 1014 97.83 1322 accept 1 ALIGNMENT 116 Y12-1k07.q1k chr12 148 287 490404 490543 F 140 95.71 1181 reject_low 2 ALIGNMENT 0 Y12-1k07.q1k chr12 288 643 490543 490542 F 356 0.00 1181 reject_low 2 ALIGNMENT 860 Y12-1k08.q1k chr07 1000 37 995794 996771 C 964 97.82 1257 accept 0 ALIGNMENT 913 Y12-1k08.p1k chr07 18 1116 991888 993015 F 1099 95.81 1341 accept 0 ALIGNMENT 1059 Y12-1k09.q1k chr13 36 1252 301915 303137 F 1217 96.71 1353 accept 0 ALIGNMENT 990 Y12-1k09.p1k chr13 1171 26 305400 306533 C 1146 96.68 1434 accept 0 ALIGNMENT 889 Y12-1k10.q1k chr16 29 1102 306148 307243 F 1074 94.88 1327 accept 0 ALIGNMENT 933 Y12-1k10.p1k chr16 1082 16 309571 310651 C 1067 96.72 1327 accept 0 ALIGNMENT 296 Y12-1k12.q1k chr16 217 819 306258 306858 F 603 83.91 1564 accept 0 ALIGNMENT 1018 Y12-1k15.p1k chr07 1208 20 589184 590387 C 1189 96.47 1351 accept 0 ALIGNMENT 939 Y12-1k15.q1k chr07 41 1141 585489 586603 F 1101 96.64 1263 accept 0 ALIGNMENT 1016 Y12-1k16.p1k chr04 1187 26 204203 205373 C 1162 96.90 1389 accept 0 ALIGNMENT 1013 Y12-1k17.p1k chr15 1249 18 874073 875316 C 1232 96.02 1346 accept 0 ALIGNMENT 946 Y12-1k17.q1k chr15 29 1259 868767 870000 F 1231 93.34 1297 accept 0 ALIGNMENT 437 Y12-1k18.q1k chr03 28 826 5253 6042 F 799 86.36 970 ambiguous_tel 1 ALIGNMENT 1013 Y12-1k18.p1k chr11 20 1133 659074 660189 F 1114 97.76 1363 ambiguous_tel 0 ALIGNMENT 1004 Y12-1k18.p1k chr03 1194 20 9182 10362 C 1175 96.26 1363 ambiguous_tel 1 ALIGNMENT 513 Y12-1k18.q1k chr11 774 28 663384 664145 C 747 89.83 970 ambiguous_tel 0 ALIGNMENT 610 Y12-1k19.q1k chr11 195 1086 594417 595318 F 892 89.24 1308 accept 0 ALIGNMENT 1031 Y12-1k19.p1k chr11 1259 28 597536 598767 C 1232 95.78 1356 accept 0 ALIGNMENT 555 Y12-1k20.q1k chr10 894 139 279226 279980 C 756 91.80 1304 accept 0 ALIGNMENT 970 Y12-1k20.p1k chr10 18 1256 275368 276596 F 1239 94.43 1348 accept 0 ALIGNMENT 1021 Y12-1k21.p1k chr01 16 1219 68633 69841 F 1204 95.43 1290 accept 0 ALIGNMENT 797 Y12-1k21.q1k chr01 1209 136 72852 73944 C 1074 92.74 1237 accept 0 ALIGNMENT 1018 Y12-1k22.p1k chr08 1288 27 249238 250498 C 1262 94.85 1290 accept 0 ALIGNMENT 1004 Y12-1k22.q1k chr08 39 1279 245624 246877 F 1241 94.76 1283 accept 0 ALIGNMENT 998 Y12-1l01.p1k chr11 22 1150 395627 396754 F 1129 97.08 1357 accept 0 ALIGNMENT 902 Y12-1l01.q1k chr11 1034 37 396972 397979 C 998 97.90 1259 accept 0 ALIGNMENT 406 Y12-1l02.p1k chr15 1217 635 1072732 1073323 C 583 91.77 1401 reject_low 1 ALIGNMENT 813 Y12-1l02.q1k chr16 1187 39 19684 20826 C 1149 91.91 1300 accept 0 ALIGNMENT 0 Y12-1l02.p1k chr15 634 635 1073324 1073348 C 0 0.00 1401 reject_low 1 ALIGNMENT 68 Y12-1l02.p1k chr15 634 526 1073349 1073457 C 109 88.07 1401 reject_low 1 ALIGNMENT 961 Y12-1l02.p1k chr16 24 1217 16934 18135 F 1194 94.97 1401 accept 0 ALIGNMENT 0 Y12-1l02.p1k chr15 525 62 1073458 1073457 C 464 0.00 1401 reject_low 1 ALIGNMENT 904 Y12-1l04.q1k chr12 30 1057 674084 675128 F 1028 97.67 1263 accept 0 ALIGNMENT 925 Y12-1l04.p1k chr12 1079 15 677910 678991 C 1065 96.90 1319 accept 0 ALIGNMENT 968 Y12-1l06.p1k chr04 1173 18 502983 504146 C 1156 95.85 1390 accept 0 ALIGNMENT 1011 Y12-1l06.q1k chr04 33 1204 498097 499283 F 1172 96.25 1305 accept 0 ALIGNMENT 521 Y12-1l07.q1k chr07 1140 41 995682 996771 C 1100 85.36 1339 accept 0 ALIGNMENT 550 Y12-1l07.p1k chr07 24 917 991897 992786 F 894 88.03 1451 accept 0 ALIGNMENT 977 Y12-1l08.p1k chr04 1171 20 78391 79557 C 1152 96.35 1411 accept 0 ALIGNMENT 976 Y12-1l08.q1k chr04 42 1182 74819 75968 F 1141 95.88 1334 accept 0 ALIGNMENT 991 Y12-1l09.q1k chr12 1179 38 461436 462596 C 1142 96.41 1342 accept 0 ALIGNMENT 995 Y12-1l09.p1k chr12 20 1154 456548 457706 F 1135 96.92 1339 accept 0 ALIGNMENT 991 Y12-1l09.q1k chr12 1179 38 452299 453459 C 1142 96.41 1342 reject_low 2 ALIGNMENT 995 Y12-1l09.p1k chr12 20 1154 465685 466843 F 1135 96.92 1339 reject_low 1 ALIGNMENT 951 Y12-1l10.p1k chr04 24 1055 236396 237430 F 1032 97.97 1356 accept 0 ALIGNMENT 732 Y12-1l10.q1k chr04 911 28 239793 240688 C 884 94.80 1204 accept 0 ALIGNMENT 929 Y12-1l11.p1k chr04 1100 20 1336479 1337549 C 1081 96.76 1412 accept_chi 1 ALIGNMENT 937 Y12-1l11.q1k chr15 40 1117 417005 418097 F 1078 96.85 1309 accept_chi 0 ALIGNMENT 364 Y12-1l12.p1k chr04 1175 419 529969 530727 C 757 83.88 1395 reject_low 1 ALIGNMENT 0 Y12-1l12.q1k chr02 62 272 363143 363142 F 211 0.00 1344 reject_low 3 ALIGNMENT 808 Y12-1l12.p1k chr04 1175 15 537739 538917 C 1161 91.21 1395 accept 0 ALIGNMENT 364 Y12-1l12.p1k chr04 1175 419 533854 534612 C 757 83.88 1395 reject_low 2 ALIGNMENT 765 Y12-1l12.q1k chr04 36 1172 525474 526616 F 1137 89.71 1344 accept 0 ALIGNMENT 0 Y12-1l12.p1k chr04 418 62 530728 530727 C 357 0.00 1395 reject_low 1 ALIGNMENT 0 Y12-1l12.q1k chr02 440 890 363307 363306 F 451 0.00 1344 reject_low 3 ALIGNMENT 61 Y12-1l12.q1k chr02 273 439 363143 363307 F 167 80.24 1344 reject_low 3 ALIGNMENT 0 Y12-1l12.p1k chr04 418 62 534613 534612 C 357 0.00 1395 reject_low 2 ALIGNMENT 998 Y12-1l13.q1k chr08 41 1280 426568 427811 F 1240 95.16 1371 accept 0 ALIGNMENT 1006 Y12-1l13.p1k chr08 1289 19 431212 432494 C 1271 94.57 1373 accept 0 ALIGNMENT 0 Y12-1l14.p1k chr12 140 141 467825 467806 C 0 0.00 1463 reject_low 2 ALIGNMENT 33 Y12-1l14.p1k chr12 140 101 467807 467846 C 40 100.00 1463 reject_low 2 ALIGNMENT 0 Y12-1l14.p1k chr12 140 141 458688 458669 C 0 0.00 1463 reject_low 1 ALIGNMENT 80 Y12-1l14.p1k chr12 332 141 458495 458687 C 192 80.73 1463 reject_low 1 ALIGNMENT 80 Y12-1l14.p1k chr12 332 141 467632 467824 C 192 80.73 1463 reject_low 2 ALIGNMENT 33 Y12-1l14.p1k chr12 140 101 458670 458709 C 40 100.00 1463 reject_low 1 ALIGNMENT 110 Y12-1l14.p1k chr04 417 966 614034 614578 F 550 75.27 1463 accept 0 ALIGNMENT 945 Y12-1l15.q1k chr12 1179 26 333064 334242 C 1154 95.58 1264 accept 0 ALIGNMENT 1066 Y12-1l15.p1k chr12 19 1229 327633 328847 F 1211 96.70 1372 accept 0 ALIGNMENT 508 Y12-1l16.p1k chr04 15 983 991217 992188 F 969 85.04 1382 ambiguous_trans 9 ALIGNMENT 459 Y12-1l16.p1k chr10 816 15 472999 473800 C 802 86.66 1382 ambiguous_trans 27 ALIGNMENT 860 Y12-1l16.q1k chr13 1069 10 840545 841585 C 1060 95.47 1195 accept 0 ALIGNMENT 505 Y12-1l16.p1k chr07 15 983 566345 567316 F 969 84.93 1382 ambiguous_trans 12 ALIGNMENT 512 Y12-1l16.p1k chr10 1047 15 478342 479384 C 1033 84.32 1382 ambiguous_trans 5 ALIGNMENT 888 Y12-1l16.p1k chr04 1103 15 803213 804316 C 1089 94.95 1382 ambiguous_trans_ua 2 ALIGNMENT 496 Y12-1l16.p1k chr02 983 15 260022 260993 C 969 84.62 1382 ambiguous_trans 22 ALIGNMENT 463 Y12-1l16.p1k chr15 832 15 118308 119125 C 818 86.43 1382 ambiguous_trans 26 ALIGNMENT 502 Y12-1l16.p1k chr04 15 983 882796 883767 F 969 84.83 1382 ambiguous_trans 15 ALIGNMENT 502 Y12-1l16.p1k chr12 15 983 219583 220554 F 969 84.83 1382 ambiguous_trans_ua 17 ALIGNMENT 508 Y12-1l16.p1k chr05 15 1047 447894 448936 F 1033 84.12 1382 ambiguous_trans 7 ALIGNMENT 469 Y12-1l16.p1k chr04 832 15 1096368 1097185 C 818 86.67 1382 ambiguous_trans 24 ALIGNMENT 493 Y12-1l16.p1k chr12 15 947 480476 481409 F 933 85.10 1382 ambiguous_trans 23 ALIGNMENT 505 Y12-1l16.p1k chr04 15 983 649995 650966 F 969 84.93 1382 ambiguous_trans 11 ALIGNMENT 505 Y12-1l16.p1k chr01 15 983 164741 165712 F 969 85.04 1382 ambiguous_trans 10 ALIGNMENT 914 Y12-1l16.p1k chr02 1072 15 221390 222459 C 1058 96.60 1382 ambiguous_trans 3 ALIGNMENT 911 Y12-1l16.p1k chr13 15 1103 361500 362603 F 1089 95.68 1382 ambiguous_trans 1 ALIGNMENT 512 Y12-1l16.p1k chr16 15 1047 809139 810181 F 1033 84.32 1382 ambiguous_trans 6 ALIGNMENT 466 Y12-1l16.p1k chr04 832 15 1207296 1208113 C 818 86.55 1382 ambiguous_trans 25 ALIGNMENT 505 Y12-1l16.p1k chr13 983 15 184616 185587 C 969 84.93 1382 ambiguous_trans 13 ALIGNMENT 697 Y12-1l16.p1k chr14 15 983 101106 102077 F 969 91.64 1382 ambiguous_trans 4 ALIGNMENT 499 Y12-1l16.p1k chr15 983 15 595267 596238 C 969 84.73 1382 ambiguous_trans 20 ALIGNMENT 505 Y12-1l16.p1k chr16 15 983 855127 856098 F 969 84.93 1382 ambiguous_trans 14 ALIGNMENT 499 Y12-1l16.p1k chr16 983 15 844860 845831 C 969 84.73 1382 ambiguous_trans 21 ALIGNMENT 508 Y12-1l16.p1k chr13 1047 15 196712 197754 C 1033 84.12 1382 ambiguous_trans 8 ALIGNMENT 499 Y12-1l16.p1k chr07 983 15 536216 537187 C 969 84.83 1382 ambiguous_trans 19 ALIGNMENT 502 Y12-1l16.p1k chr05 15 983 496993 497964 F 969 84.83 1382 ambiguous_trans 16 ALIGNMENT 502 Y12-1l16.p1k chr13 15 983 377198 378169 F 969 84.83 1382 ambiguous_trans 18 ALIGNMENT 861 Y12-1l18.q1k chr14 39 1203 521787 522954 F 1165 92.88 1315 ambiguous_trans 9 ALIGNMENT 939 Y12-1l18.q1k chr05 1223 39 494581 495789 C 1185 94.09 1315 ambiguous_trans 6 ALIGNMENT 834 Y12-1l18.q1k chr16 1223 39 852715 853923 C 1185 91.05 1315 ambiguous_trans 12 ALIGNMENT 839 Y12-1l18.q1k chr10 39 1044 475004 476013 F 1006 95.03 1315 ambiguous_trans 16 ALIGNMENT 957 Y12-1l18.p1k chr13 29 1132 835514 836619 F 1104 96.65 1358 accept 0 ALIGNMENT 839 Y12-1l18.q1k chr15 39 1044 120329 121338 F 1006 95.03 1315 ambiguous_trans 20 ALIGNMENT 843 Y12-1l18.q1k chr13 1223 39 374786 375994 C 1185 91.31 1315 ambiguous_trans 10 ALIGNMENT 839 Y12-1l18.q1k chr13 39 1044 198958 199967 F 1006 95.03 1315 ambiguous_trans 19 ALIGNMENT 949 Y12-1l18.q1k chr13 1223 39 359088 360296 C 1185 94.43 1315 ambiguous_trans 2 ALIGNMENT 881 Y12-1l18.q1k chr04 1044 39 880583 881592 C 1006 96.42 1315 ambiguous_trans 11 ALIGNMENT 942 Y12-1l18.q1k chr12 1223 39 217171 218379 C 1185 94.18 1315 ambiguous_trans_ua 4 ALIGNMENT 980 Y12-1l18.q1k chr02 39 1203 223663 224848 F 1165 95.71 1315 ambiguous_trans 1 ALIGNMENT 839 Y12-1l18.q1k chr13 39 1044 186791 187800 F 1006 95.03 1315 ambiguous_trans 18 ALIGNMENT 839 Y12-1l18.q1k chr05 1044 39 445681 446690 C 1006 95.03 1315 ambiguous_trans 15 ALIGNMENT 929 Y12-1l18.q1k chr14 1223 39 98694 99902 C 1185 93.84 1315 ambiguous_trans 8 ALIGNMENT 939 Y12-1l18.q1k chr08 1223 39 545694 546902 C 1185 94.09 1315 ambiguous_trans 7 ALIGNMENT 836 Y12-1l18.q1k chr16 39 1044 847038 848047 F 1006 94.93 1315 ambiguous_trans 23 ALIGNMENT 956 Y12-1l18.q1k chr02 39 1203 262197 263385 F 1165 95.02 1315 ambiguous_trans 5 ALIGNMENT 835 Y12-1l18.q1k chr12 39 1203 653451 654636 F 1165 91.42 1315 ambiguous_trans 14 ALIGNMENT 839 Y12-1l18.q1k chr10 39 1044 480588 481597 F 1006 95.03 1315 ambiguous_trans 17 ALIGNMENT 943 Y12-1l18.q1k chr07 1223 39 819482 820690 C 1185 94.26 1315 ambiguous_trans 3 ALIGNMENT 836 Y12-1l18.q1k chr16 1044 39 806926 807935 C 1006 94.93 1315 ambiguous_trans 22 ALIGNMENT 841 Y12-1l18.q1k chr07 39 1203 538391 539576 F 1165 91.59 1315 ambiguous_trans 13 ALIGNMENT 836 Y12-1l18.q1k chr15 39 1044 597442 598451 F 1006 94.93 1315 ambiguous_trans 21 ALIGNMENT 987 Y12-1l19.p1k chr04 23 1130 232152 233271 F 1108 97.38 1315 accept 0 ALIGNMENT 835 Y12-1l19.q1k chr04 1284 113 234471 235661 C 1172 91.30 1347 accept 0 ALIGNMENT 955 Y12-1l20.p1k chr01 1095 21 167428 168508 C 1075 97.21 1362 accept 0 ALIGNMENT 788 Y12-1l20.q1k chr01 72 1136 156547 157622 F 1065 91.55 1239 accept 0 ALIGNMENT 916 Y12-1l21.p1k chr08 22 1203 469377 470546 F 1182 94.33 1340 accept 0 ALIGNMENT 786 Y12-1l21.q1k chr08 1196 37 473682 474854 C 1160 91.55 1224 accept 0 ALIGNMENT 967 Y12-1l22.p1k chr07 24 1139 257632 258763 F 1116 97.04 1346 accept 0 ALIGNMENT 868 Y12-1l22.q1k chr07 1009 38 261139 262112 C 972 97.22 1292 accept 0 ALIGNMENT 978 Y12-1l23.p1k chr09 18 1161 145762 146906 F 1144 96.24 1272 accept 0 ALIGNMENT 981 Y12-1l23.q1k chr09 1202 34 150411 151589 C 1169 95.47 1258 accept 0 ALIGNMENT 934 Y12-1l24.q1k chr07 29 1130 745122 746245 F 1102 96.01 1243 accept 0 ALIGNMENT 968 Y12-1l24.p1k chr07 1210 19 749171 750374 C 1192 95.55 1343 accept 0 ALIGNMENT 906 Y12-1m01.q1k chr03 1156 41 288282 289393 C 1116 95.16 1319 ambiguous_tel 1 ALIGNMENT 993 Y12-1m01.p1k chr16 1135 20 130300 131427 C 1116 96.77 1310 accept 0 ALIGNMENT 168 Y12-1m02.q1k chr14 97 819 89342 90063 F 723 75.80 1439 accept 0 ALIGNMENT 30 Y12-1m03.q1k chr15 411 340 620732 620803 C 72 80.56 1332 reject_low 1 ALIGNMENT 955 Y12-1m03.q1k chr14 1148 33 765134 766258 C 1116 95.97 1332 accept 0 ALIGNMENT 0 Y12-1m03.q1k chr15 876 412 620733 620732 C 465 0.00 1332 reject_low 1 ALIGNMENT 0 Y12-1m03.q1k chr15 339 314 620804 620829 C 26 0.00 1332 reject_low 1 ALIGNMENT 24 Y12-1m03.q1k chr15 313 263 620830 620880 C 51 82.35 1332 reject_low 1 ALIGNMENT 0 Y12-1m03.q1k chr15 262 62 620881 620880 C 201 0.00 1332 reject_low 1 ALIGNMENT 991 Y12-1m03.p1k chr14 21 1127 761969 763082 F 1107 97.02 1316 accept 0 ALIGNMENT 842 Y12-1m04.q1k chr14 37 1127 89286 90375 F 1091 93.49 1342 accept 0 ALIGNMENT 879 Y12-1m04.p1k chr14 1082 19 93931 95000 C 1064 95.49 1303 accept 0 ALIGNMENT 23 Y12-1m05.q1k chr16 149 237 252268 252356 F 89 86.52 1302 reject_low 2 ALIGNMENT 0 Y12-1m05.q1k chr16 238 941 252356 252355 F 704 0.00 1302 reject_low 2 ALIGNMENT 879 Y12-1m05.p1k chr16 1003 27 191264 192255 C 977 97.85 1295 accept 0 ALIGNMENT 0 Y12-1m05.q1k chr16 268 941 536803 536802 F 674 0.00 1302 reject_low 1 ALIGNMENT 25 Y12-1m05.q1k chr16 173 216 187381 187424 F 44 93.18 1302 reject_low 3 ALIGNMENT 37 Y12-1m05.q1k chr16 147 267 536683 536803 F 121 85.95 1302 reject_low 1 ALIGNMENT 0 Y12-1m05.q1k chr16 217 941 187424 187423 F 725 0.00 1302 reject_low 3 ALIGNMENT 990 Y12-1m05.q1k chr16 34 1204 187200 188376 F 1171 96.41 1302 accept 0 ALIGNMENT 0 Y12-1m05.q1k chr16 62 148 252268 252267 F 87 0.00 1302 reject_low 2 ALIGNMENT 0 Y12-1m05.q1k chr16 62 172 187381 187380 F 111 0.00 1302 reject_low 3 ALIGNMENT 0 Y12-1m05.q1k chr16 62 146 536683 536682 F 85 0.00 1302 reject_low 1 ALIGNMENT 157 Y12-1m06.q1k chr13 827 630 420976 421174 C 198 96.46 1281 reject_bad_break 0 ALIGNMENT 959 Y12-1m06.p1k chr13 20 1223 417084 418298 F 1204 95.18 1353 reject_bad_break 0 ALIGNMENT 528 Y12-1m06.q1k chr13 602 36 421166 421732 C 567 99.29 1281 reject_bad_break 0 ALIGNMENT 0 Y12-1m06.q1k chr13 869 828 420977 420976 C 42 0.00 1281 reject_bad_break 0 ALIGNMENT 0 Y12-1m06.q1k chr13 629 603 421175 421165 C 27 0.00 1281 reject_bad_break 0 ALIGNMENT 969 Y12-1m07.p1k chr10 19 1279 611750 613029 F 1261 93.97 1386 accept 0 ALIGNMENT 933 Y12-1m07.q1k chr10 1145 36 616141 617256 C 1110 96.31 1324 accept 0 ALIGNMENT 997 Y12-1m09.q1k chr13 31 1155 641524 642658 F 1125 97.24 1301 accept 0 ALIGNMENT 951 Y12-1m09.p1k chr13 1120 17 645005 646127 C 1104 96.20 1352 accept 0 ALIGNMENT 931 Y12-1m10.p1k chr07 1157 31 602956 604084 C 1127 95.47 1361 accept 0 ALIGNMENT 845 Y12-1m10.q1k chr07 36 1098 598653 599713 F 1063 94.17 1321 accept 0 ALIGNMENT 937 Y12-1m11.p1k chr02 18 1133 131971 133102 F 1116 96.06 1330 accept 0 ALIGNMENT 873 Y12-1m11.q1k chr02 1091 72 135043 136065 C 1020 95.88 1282 accept 0 ALIGNMENT 946 Y12-1m12.q1k chr15 37 1222 240274 241471 F 1186 94.69 1304 accept 0 ALIGNMENT 961 Y12-1m12.p1k chr15 1140 25 241859 242988 C 1116 96.24 1340 accept 0 ALIGNMENT 963 Y12-1m13.q1k chr14 1178 41 283184 284338 C 1138 96.66 1293 accept 0 ALIGNMENT 954 Y12-1m13.p1k chr14 24 1160 280299 281459 F 1137 95.95 1330 accept 0 ALIGNMENT 996 Y12-1m14.p1k chr05 1180 18 283098 284273 C 1163 96.39 1364 accept 0 ALIGNMENT 1011 Y12-1m14.q1k chr05 37 1203 280222 281399 F 1167 96.23 1324 accept 0 ALIGNMENT 0 Y12-1m15.p1k chr10 786 332 483757 483756 C 455 0.00 1417 reject_low 4 ALIGNMENT 41 Y12-1m15.p1k chr01 202 331 160239 160369 F 130 80.00 1417 reject_low 2 ALIGNMENT 0 Y12-1m15.p1k chr10 786 332 472585 472584 C 455 0.00 1417 reject_low 3 ALIGNMENT 0 Y12-1m15.p1k chr16 786 332 62246 62245 C 455 0.00 1417 reject_low 5 ALIGNMENT 0 Y12-1m15.p1k chr16 201 62 62376 62375 C 140 0.00 1417 reject_low 5 ALIGNMENT 41 Y12-1m15.p1k chr10 331 202 483756 483886 C 130 80.00 1417 reject_low 4 ALIGNMENT 0 Y12-1m15.p1k chr01 332 786 160369 160368 F 455 0.00 1417 reject_low 2 ALIGNMENT 208 Y12-1m15.p1k chr16 672 1012 781557 781891 F 341 89.74 1417 reject_low 1 ALIGNMENT 0 Y12-1m15.p1k chr16 62 671 781557 781556 F 610 0.00 1417 reject_low 1 ALIGNMENT 0 Y12-1m15.p1k chr15 221 62 595133 595132 C 160 0.00 1417 reject_low 6 ALIGNMENT 0 Y12-1m15.p1k chr10 201 62 483887 483886 C 140 0.00 1417 reject_low 4 ALIGNMENT 0 Y12-1m15.p1k chr01 62 201 160239 160238 F 140 0.00 1417 reject_low 2 ALIGNMENT 0 Y12-1m15.p1k chr15 786 332 595023 595022 C 455 0.00 1417 reject_low 6 ALIGNMENT 0 Y12-1m15.p1k chr10 201 62 472715 472714 C 140 0.00 1417 reject_low 3 ALIGNMENT 690 Y12-1m15.p1k chr16 15 902 776475 777358 F 888 95.05 1417 accept 0 ALIGNMENT 41 Y12-1m15.p1k chr10 331 202 472584 472714 C 130 80.00 1417 reject_low 3 ALIGNMENT 41 Y12-1m15.p1k chr16 331 202 62245 62375 C 130 80.00 1417 reject_low 5 ALIGNMENT 38 Y12-1m15.p1k chr15 331 222 595022 595132 C 110 80.91 1417 reject_low 6 ALIGNMENT 1003 Y12-1m15.q1k chr16 1214 37 783943 785121 C 1178 96.18 1325 accept 0 ALIGNMENT 304 Y12-1m16.p1k chr04 730 110 204688 205306 C 621 84.22 1390 accept 0 ALIGNMENT 994 Y12-1m18.p1k chr03 19 1283 199544 200799 F 1265 95.02 1376 reject_low 1 ALIGNMENT 991 Y12-1m18.p1k chr03 19 1277 12389 13638 F 1259 95.08 1376 accept 0 ALIGNMENT 0 Y12-1m18.p1k chr03 573 849 293732 293731 F 277 0.00 1376 reject_low 2 ALIGNMENT 523 Y12-1m18.p1k chr03 19 572 293178 293732 F 554 99.82 1376 reject_low 2 ALIGNMENT 1012 Y12-1m18.q1k chr03 1220 37 16155 17340 C 1184 95.02 1341 accept 0 ALIGNMENT 895 Y12-1m21.q1k chr13 1060 38 501584 502607 C 1023 96.29 1312 accept 0 ALIGNMENT 1025 Y12-1m21.p1k chr13 27 1290 497014 498277 F 1264 94.78 1297 accept 0 ALIGNMENT 574 Y12-1m22.q1k chr12 746 37 462194 462909 C 710 94.08 998 accept 0 ALIGNMENT 574 Y12-1m22.q1k chr12 746 37 453057 453772 C 710 94.08 998 reject_low 2 ALIGNMENT 1032 Y12-1m22.p1k chr12 20 1243 466063 467292 F 1224 95.59 1306 reject_low 1 ALIGNMENT 1032 Y12-1m22.p1k chr12 20 1243 456926 458155 F 1224 95.59 1306 accept 0 ALIGNMENT 1001 Y12-1m23.p1k chr16 22 1263 129028 130273 F 1242 93.96 1280 accept 0 ALIGNMENT 834 Y12-1m23.q1k chr16 1107 36 132729 133818 C 1072 93.38 1222 accept 0 ALIGNMENT 0 Y12-1n01.q1k chr12 429 638 482162 482161 F 210 0.00 1326 reject_low 3 ALIGNMENT 290 Y12-1n01.p1k chr12 1269 744 490028 490543 C 526 87.26 1349 reject_low 2,3,4 ALIGNMENT 1008 Y12-1n01.p1k chr12 1269 23 461197 462433 C 1247 94.63 1349 reject_bad_break 0 ALIGNMENT 22 Y12-1n01.q1k chr12 1105 1326 460478 460692 F 222 73.87 1326 reject_bad_break 0 ALIGNMENT 658 Y12-1n01.q1k chr12 32 824 459397 460202 F 793 95.84 1326 reject_bad_break 0 ALIGNMENT 0 Y12-1n01.p1k chr12 743 62 490544 490543 C 682 0.00 1349 reject_low 2,3,4 ALIGNMENT 1008 Y12-1n01.p1k chr12 1269 23 452060 453296 C 1247 94.63 1349 reject_low 1 ALIGNMENT 0 Y12-1n01.q1k chr12 62 309 489348 489347 F 248 0.00 1326 reject_low 2 ALIGNMENT 0 Y12-1n01.q1k chr12 429 638 472582 472581 F 210 0.00 1326 reject_low 6 ALIGNMENT 0 Y12-1n01.q1k chr12 429 638 468930 468929 F 210 0.00 1326 reject_low 5 ALIGNMENT 119 Y12-1n01.q1k chr12 310 428 485696 485814 F 119 100.00 1326 reject_low 4 ALIGNMENT 389 Y12-1n01.q1k chr12 32 428 468534 468930 F 397 100.00 1326 reject_low 5 ALIGNMENT 0 Y12-1n01.q1k chr12 62 309 485696 485695 F 248 0.00 1326 reject_low 4 ALIGNMENT 119 Y12-1n01.q1k chr12 310 428 472464 472582 F 119 100.00 1326 reject_low 6 ALIGNMENT 0 Y12-1n01.q1k chr12 825 1104 460203 460477 F 280 0.00 1326 reject_bad_break 0 ALIGNMENT 128 Y12-1n01.q1k chr12 310 443 489348 489481 F 134 98.51 1326 reject_low 2 ALIGNMENT 0 Y12-1n01.q1k chr12 429 638 485814 485813 F 210 0.00 1326 reject_low 4 ALIGNMENT 119 Y12-1n01.q1k chr12 310 428 482044 482162 F 119 100.00 1326 reject_low 3 ALIGNMENT 0 Y12-1n01.q1k chr12 62 309 482044 482043 F 248 0.00 1326 reject_low 3 ALIGNMENT 0 Y12-1n01.q1k chr12 444 638 489481 489480 F 195 0.00 1326 reject_low 2 ALIGNMENT 0 Y12-1n01.q1k chr12 62 309 472464 472463 F 248 0.00 1326 reject_low 6 ALIGNMENT 1005 Y12-1n02.q1k chr12 39 1213 456259 457444 F 1175 95.15 1282 accept 0 ALIGNMENT 1005 Y12-1n02.q1k chr12 39 1213 465396 466581 F 1175 95.15 1282 accept 1 ALIGNMENT 954 Y12-1n03.q1k chr04 1194 36 347563 348732 C 1159 96.55 1311 accept 0 ALIGNMENT 962 Y12-1n03.p1k chr04 21 1171 344869 346043 F 1151 95.57 1323 accept 0 ALIGNMENT 1050 Y12-1n04.p1k chr12 18 1208 462070 463269 F 1191 96.73 1375 accept 1 ALIGNMENT 898 Y12-1n04.q1k chr12 1122 28 466747 467846 C 1095 94.52 1275 accept 1 ALIGNMENT 1050 Y12-1n04.p1k chr12 18 1208 452933 454132 F 1191 96.73 1375 accept 0 ALIGNMENT 898 Y12-1n04.q1k chr12 1122 28 457610 458709 C 1095 94.52 1275 accept 0 ALIGNMENT 507 Y12-1n06.p1k chr04 20 684 332214 332896 F 665 94.89 1328 accept 0 ALIGNMENT 879 Y12-1n06.q1k chr04 1094 31 335884 336956 C 1064 95.58 1343 accept 0 ALIGNMENT 43 Y12-1n07.p1k chr07 1049 960 876398 876481 C 90 87.78 1408 reject_low 2 ALIGNMENT 1067 Y12-1n07.q1k chr07 1235 36 188733 189942 C 1200 97.08 1313 accept 0 ALIGNMENT 49 Y12-1n07.p1k chr04 960 1063 1352446 1352542 F 104 87.50 1408 reject_low 1 ALIGNMENT 0 Y12-1n07.p1k chr07 959 62 876482 876481 C 898 0.00 1408 reject_low 2 ALIGNMENT 946 Y12-1n07.p1k chr07 21 1327 184776 186061 F 1307 93.34 1408 accept 0 ALIGNMENT 0 Y12-1n07.p1k chr04 62 959 1352446 1352445 F 898 0.00 1408 reject_low 1 ALIGNMENT 0 Y12-1n08.p1k chr13 62 797 626997 626996 F 736 0.00 1336 reject_low 1 ALIGNMENT 940 Y12-1n08.q1k chr16 28 1165 103900 105049 F 1138 96.22 1302 accept 0 ALIGNMENT 947 Y12-1n08.p1k chr16 1083 21 107771 108852 C 1063 97.27 1336 accept 0 ALIGNMENT 75 Y12-1n08.p1k chr13 798 1017 626997 627222 F 220 79.55 1336 reject_low 1 ALIGNMENT 976 Y12-1n09.q1k chr05 39 1227 466177 467373 F 1189 95.37 1336 accept 0 ALIGNMENT 985 Y12-1n09.p1k chr05 1115 17 469688 470788 C 1099 97.54 1351 accept 0 ALIGNMENT 926 Y12-1n10.p1k chr04 1067 21 453036 454085 C 1047 97.42 1372 accept 0 ALIGNMENT 917 Y12-1n11.p1k chr04 1046 29 1199500 1200520 C 1018 98.23 1337 accept 0 ALIGNMENT 945 Y12-1n11.q1k chr04 39 1132 1195395 1196499 F 1094 96.98 1262 accept 0 ALIGNMENT 0 Y12-1n13.q1k chrm 718 467 63868 63867 C 252 0.00 1376 reject_low 1 ALIGNMENT 23 Y12-1n13.q1k chrm 466 438 63867 63895 C 29 96.55 1376 reject_low 1 ALIGNMENT 495 Y12-1n13.q1k chrm 752 31 78252 78974 C 722 99.17 1376 accept 0 ALIGNMENT 0 Y12-1n13.q1k chrm 437 62 63896 63895 C 376 0.00 1376 reject_low 1 ALIGNMENT 941 Y12-1n14.q1k chr04 1147 35 1102418 1103543 C 1113 96.23 1292 accept_trans 0 ALIGNMENT 898 Y12-1n14.p1k chr04 30 1093 1092333 1093409 F 1064 96.90 1356 accept_trans 0 ALIGNMENT 956 Y12-1n15.p1k chr14 28 1114 259088 260184 F 1087 96.41 1325 accept 0 ALIGNMENT 279 Y12-1n16.p1k chr14 197 811 620303 620900 F 615 83.90 1463 accept_chi 1 ALIGNMENT 884 Y12-1n16.q1k chr15 38 1090 277814 278886 F 1053 96.30 1284 accept_chi 0 ALIGNMENT 988 Y12-1n17.p1k chr10 1184 17 98188 99376 C 1168 96.06 1326 accept 0 ALIGNMENT 1062 Y12-1n17.q1k chr10 31 1233 95238 96451 F 1203 96.67 1326 accept 0 ALIGNMENT 1022 Y12-1n18.p1k chr13 17 1177 248781 249956 F 1161 97.24 1387 accept_chi 0 ALIGNMENT 929 Y12-1n18.q1k chr10 35 1170 330223 331381 F 1136 95.60 1276 accept_chi 1 ALIGNMENT 1028 Y12-1n19.q1k chr04 1264 40 392675 393906 C 1225 95.02 1312 accept 0 ALIGNMENT 1045 Y12-1n19.p1k chr04 18 1312 387580 388875 F 1295 94.52 1326 accept 0 ALIGNMENT 0 Y12-1n20.q1k chr02 475 62 36495 36494 C 414 0.00 1281 reject_low 7 ALIGNMENT 94 Y12-1n20.q1k chr08 484 577 358480 358573 F 94 100.00 1281 reject_low 8 ALIGNMENT 89 Y12-1n20.q1k chr13 577 465 352278 352389 C 113 93.81 1281 reject_low 2 ALIGNMENT 0 Y12-1n20.q1k chr06 62 482 157908 157907 F 421 0.00 1281 reject_low 6 ALIGNMENT 0 Y12-1n20.q1k chr08 578 868 237942 237941 F 291 0.00 1281 reject_low 5 ALIGNMENT 0 Y12-1n20.q1k chr16 62 474 622527 622526 F 413 0.00 1281 reject_low 3 ALIGNMENT 0 Y12-1n20.q1k chr04 62 473 1095354 1095353 F 412 0.00 1281 reject_low 4 ALIGNMENT 0 Y12-1n20.q1k chr13 868 578 352279 352278 C 291 0.00 1281 reject_low 2 ALIGNMENT 0 Y12-1n20.q1k chr07 577 868 440812 440811 F 292 0.00 1281 reject_low 9 ALIGNMENT 659 Y12-1n20.q1k chr16 31 763 559741 560477 F 733 98.23 1281|0,2 accept 0 ALIGNMENT 914 Y12-1n20.p1k chr16 1128 21 562889 563992 C 1108 95.67 1349 accept 0 ALIGNMENT 96 Y12-1n20.q1k chr16 475 576 622527 622628 F 102 98.04 1281 reject_low 3 ALIGNMENT 93 Y12-1n20.q1k chr07 484 576 440720 440812 F 93 100.00 1281 reject_low 9 ALIGNMENT 0 Y12-1n20.q1k chr07 62 483 440720 440719 F 422 0.00 1281 reject_low 9 ALIGNMENT 0 Y12-1n20.q1k chr08 62 483 358480 358479 F 422 0.00 1281 reject_low 8 ALIGNMENT 79 Y12-1n20.q1k chr14 577 485 374870 374961 C 93 95.70 1281 reject_low 10 ALIGNMENT 0 Y12-1n20.q1k chr08 62 481 237847 237846 F 420 0.00 1281 reject_low 5 ALIGNMENT 160 Y12-1n20.q1k chr16 1019 702 571852 572172 C 318 86.16 1281 reject_low 1 ALIGNMENT 0 Y12-1n20.q1k chr04 578 868 1095457 1095456 F 291 0.00 1281 reject_low 4 ALIGNMENT 0 Y12-1n20.q1k chr06 578 868 158002 158001 F 291 0.00 1281 reject_low 6 ALIGNMENT 0 Y12-1n20.q1k chr14 484 62 374962 374961 C 423 0.00 1281 reject_low 10 ALIGNMENT 258 Y12-1n20.q1k chr16 759 1213 560810 561266 F 455 88.13 1281|3,0 accept 0 ALIGNMENT 88 Y12-1n20.q1k chr02 577 476 36394 36494 C 102 96.08 1281 reject_low 7 ALIGNMENT 95 Y12-1n20.q1k chr06 483 577 157908 158002 F 95 100.00 1281 reject_low 6 ALIGNMENT 0 Y12-1n20.q1k chr02 868 578 36395 36394 C 291 0.00 1281 reject_low 7 ALIGNMENT 0 Y12-1n20.q1k chr14 868 578 374871 374870 C 291 0.00 1281 reject_low 10 ALIGNMENT 96 Y12-1n20.q1k chr08 482 577 237847 237942 F 96 100.00 1281 reject_low 5 ALIGNMENT 0 Y12-1n20.q1k chr08 578 868 358573 358572 F 291 0.00 1281 reject_low 8 ALIGNMENT 89 Y12-1n20.q1k chr04 474 577 1095354 1095457 F 104 95.19 1281 reject_low 4 ALIGNMENT 0 Y12-1n20.q1k chr16 577 868 622628 622627 F 292 0.00 1281 reject_low 3 ALIGNMENT 0 Y12-1n20.q1k chr16 762 761 560476 560812 F 0 0.00 1281 accept 0 ALIGNMENT 0 Y12-1n20.q1k chr16 701 62 572173 572172 C 640 0.00 1281 reject_low 1 ALIGNMENT 0 Y12-1n20.q1k chr13 464 62 352390 352389 C 403 0.00 1281 reject_low 2 ALIGNMENT 0 Y12-1n21.q1k chrm 110 62 57874 57873 C 49 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-1n21.q1k chrm 430 508 124 123 F 79 0.00 1368 reject_low 10 ALIGNMENT 0 Y12-1n21.q1k chrm 387 62 34331 34330 C 326 0.00 1368 reject_low 7 ALIGNMENT 24 Y12-1n21.q1k chrm 121 173 73121 73173 F 53 84.91 1368 reject_low 16 ALIGNMENT 0 Y12-1n21.q1k chrm 62 120 73121 73120 F 59 0.00 1368 reject_low 16 ALIGNMENT 0 Y12-1n21.q1k chrm 388 62 73053 73052 C 327 0.00 1368 reject_low 8 ALIGNMENT 44 Y12-1n21.q1k chrm 388 441 2750 2804 F 54 94.44 1368 reject_low 2,4 ALIGNMENT 0 Y12-1n21.q1k chrm 145 62 83329 83328 C 84 0.00 1368 reject_low 12,14,15 ALIGNMENT 23 Y12-1n21.q1k chrm 471 542 77836 77907 F 72 80.56 1368 reject_low 16 ALIGNMENT 37 Y12-1n21.q1k chrm 431 388 83054 83097 C 44 97.73 1368 reject_low 15 ALIGNMENT 37 Y12-1n21.q1k chrm 431 388 34287 34330 C 44 97.73 1368 reject_low 7 ALIGNMENT 94 Y12-1n21.q1k chrm 481 598 34150 34266 F 118 94.07 1368 reject_low 1 ALIGNMENT 0 Y12-1n21.q1k chrm 175 513 65115 73453 F 339 0.00 1368 reject_low 13 ALIGNMENT 0 Y12-1n21.q1k chrm 508 432 34288 34287 C 77 0.00 1368 reject_low 7 ALIGNMENT 50 Y12-1n21.q1k chrm 111 166 84748 84803 F 56 100.00 1368 reject_low 5 ALIGNMENT 51 Y12-1n21.q1k chrm 111 174 65053 65114 F 64 96.88 1368 reject_low 13 ALIGNMENT 0 Y12-1n21.q1k chrm 442 490 2805 2842 F 49 0.00 1368 reject_low 2,4 ALIGNMENT 29 Y12-1n21.q1k chrm 395 429 90 124 F 35 97.14 1368 reject_low 10 ALIGNMENT 72 Y12-1n21.q1k chrm 453 532 73156 73235 F 80 97.50 1368 reject_bad_break 0 ALIGNMENT 0 Y12-1n21.q1k chrm 508 179 53622 53621 C 330 0.00 1368 reject_low 9 ALIGNMENT 0 Y12-1n21.q1k chrm 382 62 53876 53875 C 321 0.00 1368 reject_low 6 ALIGNMENT 0 Y12-1n21.q1k chrm 508 432 77673 77672 C 77 0.00 1368 reject_low 14 ALIGNMENT 32 Y12-1n21.q1k chrm 491 532 2843 2884 F 42 92.86 1368 reject_low 2,4 ALIGNMENT 24 Y12-1n21.q1k chrm 178 120 53621 53676 C 59 84.75 1368 reject_low 9 ALIGNMENT 0 Y12-1n21.q1k chrm 377 218 77726 83254 C 160 0.00 1368 reject_low 14 ALIGNMENT 0 Y12-1n21.q1k chrm 119 62 53677 53676 C 58 0.00 1368 reject_low 9 ALIGNMENT 34 Y12-1n21.q1k chrm 431 378 77672 77725 C 54 88.89 1368 reject_low 14 ALIGNMENT 42 Y12-1n21.q1k chrm 435 383 53823 53875 C 53 94.34 1368 reject_low 6 ALIGNMENT 0 Y12-1n21.q1k chrm 62 110 84748 84747 F 49 0.00 1368 reject_low 5 ALIGNMENT 0 Y12-1n21.q1k chrm 508 435 81402 81401 C 74 0.00 1368 reject_low 12 ALIGNMENT 66 Y12-1n21.q1k chrm 570 721 73223 73379 F 152 86.84 1368 reject_bad_break 0 ALIGNMENT 53 Y12-1n21.q1k chrm 176 111 57807 57873 C 66 95.45 1368 reject_low 11 ALIGNMENT 0 Y12-1n21.q1k chrm 165 387 2641 2749 F 223 0.00 1368 reject_low 2,4 ALIGNMENT 202 Y12-1n21.q1k chrm 35 347 72702 73012 F 313 92.97 1368 reject_bad_break 0 ALIGNMENT 22 Y12-1n21.q1k chrm 514 548 73454 73489 F 35 91.43 1368 reject_low 13 ALIGNMENT 31 Y12-1n21.q1k chrm 435 389 73007 73052 C 47 91.49 1368 reject_low 8 ALIGNMENT 0 Y12-1n21.q1k chrm 348 452 73013 73155 F 105 0.00 1368 reject_bad_break 0 ALIGNMENT 21 Y12-1n21.q1k chrm 217 146 83255 83328 C 72 81.94 1368 reject_low 12,14,15 ALIGNMENT 60 Y12-1n21.q1k chrm 441 379 52762 52824 C 63 98.41 1368 reject_low 11 ALIGNMENT 0 Y12-1n21.q1k chrm 62 394 90 89 F 333 0.00 1368 reject_low 10 ALIGNMENT 0 Y12-1n21.q1k chrm 387 218 83098 83254 C 170 0.00 1368 reject_low 15 ALIGNMENT 0 Y12-1n21.q1k chrm 174 470 73174 77835 F 297 0.00 1368 reject_low 16 ALIGNMENT 20 Y12-1n21.p1k chrm 445 411 10749 10783 C 35 88.57 1384 reject_low 4 ALIGNMENT 0 Y12-1n21.q1k chrm 378 177 52825 57806 C 202 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-1n21.q1k chrm 373 218 81463 83254 C 156 0.00 1368 reject_low 12 ALIGNMENT 0 Y12-1n21.q1k chrm 508 442 52763 52762 C 67 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-1n21.q1k chrm 519 62 2612 2611 C 458 0.00 1368 reject_low 3 ALIGNMENT 0 Y12-1n21.q1k chrm 508 432 83055 83054 C 77 0.00 1368 reject_low 15 ALIGNMENT 0 Y12-1n21.q1k chrm 508 436 53824 53823 C 73 0.00 1368 reject_low 6 ALIGNMENT 34 Y12-1n21.q1k chrm 574 520 2552 2611 C 55 89.09 1368 reject_low 3 ALIGNMENT 0 Y12-1n21.q1k chrm 62 123 2599 2598 F 62 0.00 1368 reject_low 2,4 ALIGNMENT 0 Y12-1n21.q1k chrm 167 508 84803 84802 F 342 0.00 1368 reject_low 5 ALIGNMENT 44 Y12-1n21.q1k chrm 434 374 81401 81462 C 61 91.80 1368 reject_low 12 ALIGNMENT 33 Y12-1n21.q1k chrm 124 164 2599 2640 F 41 97.56 1368 reject_low 2,4 ALIGNMENT 23 Y12-1n21.p1k chrm 459 415 11038 11080 C 45 86.67 1384 reject_low 2 ALIGNMENT 23 Y12-1n21.p1k chrm 459 415 76586 76628 C 45 86.67 1384 reject_bad_break 0 ALIGNMENT 0 Y12-1n21.q1k chrm 62 480 34150 34149 F 419 0.00 1368 reject_low 1 ALIGNMENT 0 Y12-1n21.q1k chrm 533 569 73236 73222 F 37 0.00 1368 reject_bad_break 0 ALIGNMENT 0 Y12-1n21.q1k chrm 508 436 73008 73007 C 73 0.00 1368 reject_low 8 ALIGNMENT 0 Y12-1n21.q1k chrm 62 110 65053 65052 F 49 0.00 1368 reject_low 13 ALIGNMENT 922 Y12-1n22.p1k chr05 1184 21 21849 23015 C 1164 93.90 1380 accept 0 ALIGNMENT 732 Y12-1n22.p1k chr04 1183 21 11970 13135 C 1163 88.39 1380 reject_low 2 ALIGNMENT 927 Y12-1n22.p1k chr14 17 1067 772868 773920 F 1051 96.76 1380 reject_low 1 ALIGNMENT 0 Y12-1n22.p1k chr10 62 416 27527 27526 F 355 0.00 1380 reject_low 4 ALIGNMENT 729 Y12-1n22.p1k chr10 17 1183 732575 733745 F 1167 88.26 1380 reject_low 3 ALIGNMENT 21 Y12-1n22.p1k chr10 417 459 27527 27569 F 43 86.05 1380 reject_low 4 ALIGNMENT 741 Y12-1n22.q1k chr05 163 1206 18036 19096 F 1044 91.48 1304 accept 0 ALIGNMENT 0 Y12-1n22.p1k chr10 460 848 27569 27568 F 389 0.00 1380 reject_low 4 ALIGNMENT 982 Y12-1n23.p1k chr10 1191 18 188789 189974 C 1174 95.66 1252 accept 0 ALIGNMENT 1000 Y12-1n23.q1k chr10 36 1203 186080 187245 F 1168 96.40 1278 accept 0 ALIGNMENT 900 Y12-1n24.q1k chr05 1104 38 549417 550501 C 1067 96.34 1254 accept 0 ALIGNMENT 1033 Y12-1n24.p1k chr05 18 1178 546021 547187 F 1161 96.90 1352 accept 0 ALIGNMENT 0 Y12-1n24.p1k chr04 366 865 654368 654367 F 500 0.00 1352 reject_low 1 ALIGNMENT 147 Y12-1n24.p1k chr04 41 365 654043 654368 F 325 82.46 1352 reject_low 1 ALIGNMENT 973 Y12-1o01.p1k chr15 14 1166 846216 847364 F 1153 96.53 1312 accept_chi 0 ALIGNMENT 259 Y12-1o01.q1k chr04 446 37 369292 369697 C 410 88.54 1418 accept_chi 1 ALIGNMENT 1045 Y12-1o02.q1k chr16 32 1267 698201 699451 F 1236 95.87 1268 accept 0 ALIGNMENT 684 Y12-1o02.p1k chr02 1236 360 478151 479042 C 877 93.84 1285 reject_low 1 ALIGNMENT 1005 Y12-1o02.p1k chr16 1236 16 701078 702316 C 1221 95.33 1285 accept 0 ALIGNMENT 0 Y12-1o02.p1k chr02 359 62 479043 479042 C 298 0.00 1285 reject_low 1 ALIGNMENT 957 Y12-1o03.q1k chr07 52 1184 914338 915479 F 1133 95.68 1311 accept 0 ALIGNMENT 891 Y12-1o03.p1k chr07 1057 21 918306 919359 C 1037 96.72 1261 accept 0 ALIGNMENT 1002 Y12-1o05.p1k chr07 20 1194 952129 953308 F 1175 96.00 1348 accept 0 ALIGNMENT 978 Y12-1o05.q1k chr07 1224 37 955182 956375 C 1188 95.62 1306 accept 0 ALIGNMENT 981 Y12-1o06.p1k chr07 17 1157 1015671 1016811 F 1141 96.32 1339 accept 0 ALIGNMENT 1068 Y12-1o06.q1k chr07 1268 33 1018519 1019760 C 1236 96.93 1322 accept 0 ALIGNMENT 999 Y12-1o08.p1k chr13 1212 21 903227 904438 C 1192 95.55 1328 accept 0 ALIGNMENT 978 Y12-1o08.q1k chr13 36 1088 900274 901331 F 1053 98.67 1299 accept 0 ALIGNMENT 1049 Y12-1o09.p1k chr13 1248 20 75056 76291 C 1229 95.85 1375 accept 0 ALIGNMENT 1007 Y12-1o09.q1k chr13 35 1162 71815 72950 F 1128 96.90 1272 accept 0 ALIGNMENT 884 Y12-1o10.p1k chr02 24 1028 269383 270401 F 1005 96.42 1301 accept 0 ALIGNMENT 994 Y12-1o10.q1k chr02 1153 35 274340 275461 C 1119 97.23 1321 accept 0 ALIGNMENT 621 Y12-1o11.q1k chr02 921 84 135229 136054 C 838 92.60 1363 accept 0 ALIGNMENT 0 Y12-1o12.q1k chr02 62 975 541440 541439 F 914 0.00 1308 reject_low 4 ALIGNMENT 20 Y12-1o12.q1k chr11 1021 989 280034 280066 C 33 90.91 1308 reject_low 21 ALIGNMENT 57 Y12-1o12.q1k chr15 974 1120 427907 428053 F 147 81.63 1308 reject_low 2 ALIGNMENT 0 Y12-1o12.q1k chr05 62 992 308999 308998 F 931 0.00 1308 reject_low 19 ALIGNMENT 0 Y12-1o12.q1k chr04 62 985 810720 810719 F 924 0.00 1308 reject_low 10 ALIGNMENT 30 Y12-1o12.q1k chr13 1022 983 209871 209910 C 40 95.00 1308 reject_low 12 ALIGNMENT 0 Y12-1o12.q1k chr15 62 981 63055 63054 F 920 0.00 1308 reject_low 13 ALIGNMENT 1024 Y12-1o12.p1k chr08 1247 20 368998 370246 C 1228 95.44 1342 accept 0 ALIGNMENT 22 Y12-1o12.q1k chr04 1043 1074 810738 810769 F 32 90.62 1308 reject_low 15 ALIGNMENT 35 Y12-1o12.q1k chr04 986 1038 810720 810772 F 53 90.57 1308 reject_low 10 ALIGNMENT 0 Y12-1o12.q1k chr04 62 1042 810738 810737 F 981 0.00 1308 reject_low 15 ALIGNMENT 21 Y12-1o12.q1k chr06 999 1027 202472 202500 F 29 93.10 1308 reject_low 22 ALIGNMENT 0 Y12-1o12.q1k chr04 1000 62 604294 604293 C 939 0.00 1308 reject_low 18 ALIGNMENT 0 Y12-1o12.q1k chr13 982 62 209911 209910 C 921 0.00 1308 reject_low 12 ALIGNMENT 30 Y12-1o12.q1k chr06 1031 1074 224558 224601 F 44 90.91 1308 reject_low 7 ALIGNMENT 0 Y12-1o12.q1k chr08 62 789 365178 365177 F 728 0.00 1308 reject_low 1 ALIGNMENT 1020 Y12-1o12.q1k chr08 36 1307 364424 365688 F 1272 94.97 1308 accept 0 ALIGNMENT 26 Y12-1o12.q1k chr05 993 1021 308999 309027 F 29 100.00 1308 reject_low 19 ALIGNMENT 24 Y12-1o12.q1k chr16 1032 1008 724000 724024 C 25 100.00 1308 reject_low 24 ALIGNMENT 0 Y12-1o12.q1k chr16 1043 1033 724025 723999 C 11 0.00 1308 reject_low 24 ALIGNMENT 33 Y12-1o12.q1k chr04 1023 974 604244 604293 C 50 92.00 1308 reject_low 5 ALIGNMENT 0 Y12-1o12.q1k chr15 62 973 427907 427906 F 912 0.00 1308 reject_low 2 ALIGNMENT 0 Y12-1o12.q1k chr13 1041 62 209906 209905 C 980 0.00 1308 reject_low 14 ALIGNMENT 21 Y12-1o12.q1k chr15 1042 1088 63055 63101 F 47 82.98 1308 reject_low 9 ALIGNMENT 40 Y12-1o12.q1k chr16 983 1059 187342 187418 F 77 85.71 1308 reject_low 6 ALIGNMENT 27 Y12-1o12.q1k chr12 1041 1077 585048 585084 F 37 91.89 1308 reject_low 8 ALIGNMENT 0 Y12-1o12.q1k chr12 62 1009 585050 585049 F 948 0.00 1308 reject_low 17 ALIGNMENT 0 Y12-1o12.q1k chr15 62 1041 63055 63054 F 980 0.00 1308 reject_low 9 ALIGNMENT 0 Y12-1o12.q1k chr02 62 976 541393 541392 F 915 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-1o12.q1k chr11 988 62 280067 280066 C 927 0.00 1308 reject_low 21 ALIGNMENT 0 Y12-1o12.q1k chr11 994 62 386822 386821 C 933 0.00 1308 reject_low 20 ALIGNMENT 300 Y12-1o12.q1k chr08 790 1206 365178 365588 F 417 92.33 1308 reject_low 1 ALIGNMENT 35 Y12-1o12.q1k chr02 977 1090 541393 541506 F 114 78.95 1308 reject_low 3 ALIGNMENT 0 Y12-1o12.q1k chr04 973 62 604294 604293 C 912 0.00 1308 reject_low 5 ALIGNMENT 24 Y12-1o12.q1k chr12 1010 1038 585050 585078 F 29 96.55 1308 reject_low 17 ALIGNMENT 22 Y12-1o12.q1k chr16 1069 1044 723999 724024 C 26 96.15 1308 reject_low 24 ALIGNMENT 0 Y12-1o12.q1k chr10 1006 62 138916 138915 C 945 0.00 1308 reject_low 23 ALIGNMENT 23 Y12-1o12.q1k chr04 1056 1001 604238 604293 C 56 82.14 1308 reject_low 18 ALIGNMENT 28 Y12-1o12.q1k chr06 998 1056 224555 224613 F 59 84.75 1308 reject_low 16 ALIGNMENT 0 Y12-1o12.q1k chr06 62 997 224555 224554 F 936 0.00 1308 reject_low 16 ALIGNMENT 0 Y12-1o12.q1k chr12 62 1040 585048 585047 F 979 0.00 1308 reject_low 8 ALIGNMENT 29 Y12-1o12.q1k chr15 982 1022 63055 63095 F 41 92.68 1308 reject_low 13 ALIGNMENT 0 Y12-1o12.q1k chr16 1007 62 724025 724024 C 946 0.00 1308 reject_low 24 ALIGNMENT 32 Y12-1o12.q1k chr13 1054 995 354160 354219 C 60 86.67 1308 reject_low 11 ALIGNMENT 43 Y12-1o12.q1k chr02 976 1052 541440 541516 F 77 87.01 1308 reject_low 4 ALIGNMENT 23 Y12-1o12.q1k chr11 1023 995 386793 386821 C 29 100.00 1308 reject_low 20 ALIGNMENT 0 Y12-1o12.q1k chr16 62 982 187342 187341 F 921 0.00 1308 reject_low 6 ALIGNMENT 0 Y12-1o12.q1k chr06 62 1030 224558 224557 F 969 0.00 1308 reject_low 7 ALIGNMENT 20 Y12-1o12.q1k chr10 1030 1007 138892 138915 C 24 95.83 1308 reject_low 23 ALIGNMENT 0 Y12-1o12.q1k chr06 62 998 202472 202471 F 937 0.00 1308 reject_low 22 ALIGNMENT 0 Y12-1o12.q1k chr13 994 62 354220 354219 C 933 0.00 1308 reject_low 11 ALIGNMENT 22 Y12-1o12.q1k chr13 1076 1042 209871 209905 C 35 88.57 1308 reject_low 14 ALIGNMENT 979 Y12-1o13.p1k chr05 1173 19 54252 55424 C 1155 96.71 1320 accept 0 ALIGNMENT 1009 Y12-1o13.q1k chr05 39 1286 51066 52316 F 1248 94.87 1340 accept 0 ALIGNMENT 996 Y12-1o14.p1k chr12 18 1213 1023285 1024468 F 1196 95.74 1406 accept 0 ALIGNMENT 958 Y12-1o14.q1k chr12 1094 33 1027046 1028116 C 1062 97.55 1271 accept 0 ALIGNMENT 983 Y12-1o15.q1k chr14 37 1165 99984 101108 F 1129 96.99 1299 ambiguous_trans 4 ALIGNMENT 913 Y12-1o15.q1k chr16 37 1165 854005 855129 F 1129 94.86 1299 ambiguous_trans 22 ALIGNMENT 910 Y12-1o15.q1k chr13 37 1137 376076 377173 F 1101 95.37 1299 ambiguous_trans 24 ALIGNMENT 927 Y12-1o15.q1k chr16 1165 37 57872 58996 C 1129 95.22 1299 ambiguous_trans 8 ALIGNMENT 918 Y12-1o15.q1k chr12 37 1165 218461 219585 F 1129 95.04 1299 ambiguous_trans_ua 14 ALIGNMENT 924 Y12-1o15.q1k chr12 37 1165 479354 480478 F 1129 95.22 1299 ambiguous_trans 10 ALIGNMENT 918 Y12-1o15.q1k chr13 1165 37 185585 186709 C 1129 94.95 1299 ambiguous_trans 15 ALIGNMENT 915 Y12-1o15.q1k chr04 37 1165 990095 991219 F 1129 94.95 1299 ambiguous_trans 19 ALIGNMENT 999 Y12-1o15.q1k chr13 37 1196 360378 361533 F 1160 96.55 1299 ambiguous_trans 3 ALIGNMENT 918 Y12-1o15.q1k chr08 37 1165 546984 548108 F 1129 95.04 1299 ambiguous_trans 13 ALIGNMENT 1005 Y12-1o15.q1k chr02 1235 37 222385 223581 C 1199 95.91 1299 ambiguous_trans 1 ALIGNMENT 930 Y12-1o15.q1k chr13 1165 37 197752 198876 C 1129 95.31 1299 ambiguous_trans 7 ALIGNMENT 918 Y12-1o15.q1k chr16 37 1165 808017 809141 F 1129 95.04 1299 ambiguous_trans 16 ALIGNMENT 933 Y12-1o15.q1k chr15 1165 37 119123 120247 C 1129 95.39 1299 ambiguous_trans 6 ALIGNMENT 933 Y12-1o15.q1k chr05 37 1165 446772 447896 F 1129 95.48 1299 ambiguous_trans 5 ALIGNMENT 918 Y12-1o15.q1k chr16 1165 37 845829 846953 C 1129 94.95 1299 ambiguous_trans 17 ALIGNMENT 918 Y12-1o15.q1k chr02 1165 37 260991 262115 C 1129 94.95 1299 ambiguous_trans 12 ALIGNMENT 915 Y12-1o15.q1k chr04 37 1165 881674 882798 F 1129 94.95 1299 ambiguous_trans 18 ALIGNMENT 921 Y12-1o15.q1k chr07 37 1165 565223 566347 F 1129 95.13 1299 ambiguous_trans 11 ALIGNMENT 924 Y12-1o15.q1k chr10 1165 37 473798 474922 C 1129 95.13 1299 ambiguous_trans 9 ALIGNMENT 970 Y12-1o15.q1k chr04 1235 37 804242 805438 C 1199 94.83 1299 ambiguous_trans_ua 2 ALIGNMENT 915 Y12-1o15.q1k chr15 1165 37 596236 597360 C 1129 94.86 1299 ambiguous_trans 21 ALIGNMENT 1021 Y12-1o15.p1k chr06 17 1211 202833 204043 F 1195 95.73 1325 accept 0 ALIGNMENT 915 Y12-1o15.q1k chr10 1165 37 479382 480506 C 1129 94.86 1299 ambiguous_trans 20 ALIGNMENT 911 Y12-1o15.q1k chr01 37 1165 163618 164743 F 1129 94.86 1299 ambiguous_trans 23 ALIGNMENT 1024 Y12-1o16.p1k chr04 19 1158 1182611 1183762 F 1140 97.19 1319 accept 0 ALIGNMENT 916 Y12-1o16.q1k chr04 1279 37 1186154 1187387 C 1243 93.81 1316 accept 0 ALIGNMENT 993 Y12-1o17.q1k chr12 38 1282 458182 459437 F 1245 95.50 1282 accept 0 ALIGNMENT 965 Y12-1o17.p1k chr12 1076 23 461774 462838 C 1054 97.63 1297 accept 0 ALIGNMENT 965 Y12-1o17.p1k chr12 1076 23 452637 453701 C 1054 97.63 1297 reject_low 2 ALIGNMENT 993 Y12-1o17.q1k chr12 38 1282 467319 468574 F 1245 95.50 1282 reject_low 1 ALIGNMENT 1030 Y12-1o18.q1k chr12 1258 31 139354 140591 C 1228 96.74 1298 accept 0 ALIGNMENT 911 Y12-1o18.p1k chr12 22 1040 135357 136378 F 1019 97.45 1333 accept 0 ALIGNMENT 23 Y12-1o19.q1k chr05 616 645 377453 377482 F 30 100.00 1354 reject_low 4 ALIGNMENT 0 Y12-1o19.q1k chr11 62 615 381293 381292 F 554 0.00 1354 reject_low 5 ALIGNMENT 0 Y12-1o19.q1k chr02 614 62 780464 780463 C 553 0.00 1354 reject_low 1 ALIGNMENT 22 Y12-1o19.q1k chr11 616 653 381293 381330 F 38 92.11 1354 reject_low 5 ALIGNMENT 29 Y12-1o19.q1k chr02 657 615 780421 780463 C 43 95.35 1354 reject_low 1 ALIGNMENT 939 Y12-1o19.p1k chr09 1163 21 172404 173544 C 1143 94.93 1338 accept 0 ALIGNMENT 20 Y12-1o19.q1k chr04 618 656 923042 923080 F 39 89.74 1354 reject_low 6 ALIGNMENT 26 Y12-1o19.q1k chr04 661 616 747490 747535 C 46 91.30 1354 reject_low 2 ALIGNMENT 0 Y12-1o19.q1k chr04 615 62 747536 747535 C 554 0.00 1354 reject_low 2 ALIGNMENT 0 Y12-1o19.q1k chr04 62 617 923042 923041 F 556 0.00 1354 reject_low 6 ALIGNMENT 21 Y12-1o19.q1k chr12 660 616 556331 556375 C 45 88.89 1354 reject_low 3 ALIGNMENT 0 Y12-1o19.q1k chr05 62 615 377453 377452 F 554 0.00 1354 reject_low 4 ALIGNMENT 0 Y12-1o19.q1k chr12 615 62 556376 556375 C 554 0.00 1354 reject_low 3 ALIGNMENT 693 Y12-1o19.q1k chr09 36 933 168871 169768 F 898 93.76 1354 accept 0 ALIGNMENT 820 Y12-1o20.q1k chr12 1033 31 467749 468738 C 1003 96.01 1359 accept 1 ALIGNMENT 94 Y12-1o20.q1k chr06 216 323 31622 31729 F 108 98.15 1359 reject_low 2 ALIGNMENT 0 Y12-1o20.q1k chr06 324 726 31729 31728 F 403 0.00 1359 reject_low 2 ALIGNMENT 0 Y12-1o20.q1k chr06 62 215 31622 31621 F 154 0.00 1359 reject_low 2 ALIGNMENT 820 Y12-1o20.q1k chr12 1033 31 458612 459601 C 1003 96.01 1359 accept 0 ALIGNMENT 0 Y12-1o21.q1k chr15 913 188 117918 117917 C 726 0.00 1217 reject_low 12 ALIGNMENT 0 Y12-1o21.q1k chr05 62 254 138666 138665 F 193 0.00 1217 reject_low 2 ALIGNMENT 0 Y12-1o21.q1k chr03 62 92 168616 168615 F 31 0.00 1217 reject_low 23 ALIGNMENT 0 Y12-1o21.q1k chr07 62 252 736343 736342 F 191 0.00 1217 reject_low 4 ALIGNMENT 77 Y12-1o21.q1k chr07 253 332 736343 736422 F 80 98.75 1217 reject_low 4 ALIGNMENT 43 Y12-1o21.q1k chr16 93 187 850646 850747 F 95 84.21 1217 reject_low 20 ALIGNMENT 33 Y12-1o21.q1k chr10 142 187 354835 354880 F 46 91.30 1217 reject_low 28 ALIGNMENT 0 Y12-1o21.q1k chr03 913 188 82914 82913 C 726 0.00 1217 reject_low 17 ALIGNMENT 0 Y12-1o21.q1k chr04 87 62 1096084 1096083 C 26 0.00 1217 reject_low 10 ALIGNMENT 41 Y12-1o21.q1k chr12 94 192 592730 592833 F 99 83.84 1217 reject_low 15 ALIGNMENT 28 Y12-1o21.q1k chr03 93 186 83075 83176 F 94 79.79 1217 reject_low 29 ALIGNMENT 0 Y12-1o21.q1k chr02 331 913 405947 405946 F 583 0.00 1217 reject_low 6 ALIGNMENT 31 Y12-1o21.q1k chr03 93 187 124152 124253 F 95 80.00 1217 reject_low 27 ALIGNMENT 0 Y12-1o21.q1k chr05 333 913 138743 138742 F 581 0.00 1217 reject_low 2 ALIGNMENT 0 Y12-1o21.q1k chr12 62 92 475996 475995 F 31 0.00 1217 reject_low 19 ALIGNMENT 75 Y12-1o21.q1k chr04 253 330 568877 568954 F 78 98.72 1217 reject_low 7 ALIGNMENT 0 Y12-1o21.q1k chr07 333 913 405550 405549 F 581 0.00 1217 reject_low 3 ALIGNMENT 0 Y12-1o21.q1k chr07 92 62 932002 932001 C 31 0.00 1217 reject_low 18 ALIGNMENT 0 Y12-1o21.q1k chr03 62 92 83075 83074 F 31 0.00 1217 reject_low 29 ALIGNMENT 38 Y12-1o21.q1k chr03 192 90 149680 149789 C 103 81.55 1217 reject_low 16 ALIGNMENT 0 Y12-1o21.q1k chr16 87 62 850321 850320 C 26 0.00 1217 reject_low 14 ALIGNMENT 44 Y12-1o21.q1k chr04 187 88 1095977 1096083 C 100 84.00 1217 reject_low 10 ALIGNMENT 0 Y12-1o21.q1k chr04 913 188 1095978 1095977 C 726 0.00 1217 reject_low 10 ALIGNMENT 0 Y12-1o21.q1k chr13 252 62 131899 131898 C 191 0.00 1217 reject_low 9 ALIGNMENT 34 Y12-1o21.q1k chr16 93 187 804662 804763 F 95 81.05 1217 reject_low 25 ALIGNMENT 0 Y12-1o21.q1k chr07 252 62 828802 828801 C 191 0.00 1217 reject_low 5 ALIGNMENT 0 Y12-1o21.q1k chr10 62 141 354835 354834 F 80 0.00 1217 reject_low 28 ALIGNMENT 1005 Y12-1o21.q1k chr13 1212 37 746991 748180 C 1176 96.51 1217 accept 0 ALIGNMENT 0 Y12-1o21.q1k chr13 62 87 378300 378299 F 26 0.00 1217 reject_low 11 ALIGNMENT 0 Y12-1o21.q1k chr10 188 913 354880 354879 F 726 0.00 1217 reject_low 28 ALIGNMENT 0 Y12-1o21.q1k chr12 62 93 592730 592729 F 32 0.00 1217 reject_low 15 ALIGNMENT 39 Y12-1o21.q1k chr03 187 142 151726 151771 C 46 95.65 1217 reject_low 24 ALIGNMENT 0 Y12-1o21.q1k chr07 913 188 931901 931900 C 726 0.00 1217 reject_low 18 ALIGNMENT 75 Y12-1o21.q1k chr10 330 253 374418 374495 C 78 98.72 1217 reject_low 8 ALIGNMENT 0 Y12-1o21.q1k chr16 913 193 804534 804533 C 721 0.00 1217 reject_low 22 ALIGNMENT 0 Y12-1o21.q1k chr03 913 188 151727 151726 C 726 0.00 1217 reject_low 24 ALIGNMENT 0 Y12-1o21.q1k chr11 913 334 162486 162485 C 580 0.00 1217 reject_low 1 ALIGNMENT 0 Y12-1o21.q1k chr03 62 92 124152 124151 F 31 0.00 1217 reject_low 27 ALIGNMENT 0 Y12-1o21.q1k chr03 188 913 168717 168716 F 726 0.00 1217 reject_low 23 ALIGNMENT 34 Y12-1o21.q1k chr16 93 187 810246 810347 F 95 81.05 1217 reject_low 26 ALIGNMENT 0 Y12-1o21.q1k chr02 62 252 405870 405869 F 191 0.00 1217 reject_low 6 ALIGNMENT 0 Y12-1o21.q1k chr03 141 62 151772 151771 C 80 0.00 1217 reject_low 24 ALIGNMENT 0 Y12-1o21.q1k chr07 913 188 402172 402171 C 726 0.00 1217 reject_low 21 ALIGNMENT 37 Y12-1o21.q1k chr03 93 187 168616 168717 F 95 82.11 1217 reject_low 23 ALIGNMENT 75 Y12-1o21.q1k chr10 253 330 355288 355365 F 78 98.72 1217 reject_low 30 ALIGNMENT 77 Y12-1o21.q1k chr07 253 332 405471 405550 F 80 98.75 1217 reject_low 3 ALIGNMENT 0 Y12-1o21.q1k chr03 913 193 149681 149680 C 721 0.00 1217 reject_low 16 ALIGNMENT 44 Y12-1o21.q1k chr16 187 88 850214 850320 C 100 84.00 1217 reject_low 14 ALIGNMENT 78 Y12-1o21.q1k chr05 255 332 138666 138743 F 78 100.00 1217 reject_low 2 ALIGNMENT 44 Y12-1o21.q1k chr13 88 187 378300 378406 F 100 84.00 1217 reject_low 11 ALIGNMENT 44 Y12-1o21.q1k chr16 187 88 844623 844729 C 100 84.00 1217 reject_low 13 ALIGNMENT 0 Y12-1o21.q1k chr16 62 92 804662 804661 F 31 0.00 1217 reject_low 25 ALIGNMENT 0 Y12-1o21.q1k chr10 913 331 374419 374418 C 583 0.00 1217 reject_low 8 ALIGNMENT 77 Y12-1o21.q1k chr07 332 253 828722 828801 C 80 98.75 1217 reject_low 5 ALIGNMENT 0 Y12-1o21.q1k chr07 92 62 402273 402272 C 31 0.00 1217 reject_low 21 ALIGNMENT 0 Y12-1o21.q1k chr03 92 62 83015 83014 C 31 0.00 1217 reject_low 17 ALIGNMENT 0 Y12-1o21.q1k chr16 62 92 810246 810245 F 31 0.00 1217 reject_low 26 ALIGNMENT 0 Y12-1o21.q1k chr12 193 913 592833 592832 F 721 0.00 1217 reject_low 15 ALIGNMENT 43 Y12-1o21.q1k chr03 187 93 82913 83014 C 95 84.21 1217 reject_low 17 ALIGNMENT 0 Y12-1o21.q1k chr16 87 62 844730 844729 C 26 0.00 1217 reject_low 13 ALIGNMENT 75 Y12-1o21.q1k chr13 330 253 131821 131898 C 78 98.72 1217 reject_low 9 ALIGNMENT 0 Y12-1o21.q1k chr16 913 188 844624 844623 C 726 0.00 1217 reject_low 13 ALIGNMENT 44 Y12-1o21.q1k chr15 187 88 117917 118023 C 100 84.00 1217 reject_low 12 ALIGNMENT 0 Y12-1o21.q1k chr13 913 331 131822 131821 C 583 0.00 1217 reject_low 9 ALIGNMENT 0 Y12-1o21.q1k chr12 188 913 476097 476096 F 726 0.00 1217 reject_low 19 ALIGNMENT 0 Y12-1o21.q1k chr16 188 913 810347 810346 F 726 0.00 1217 reject_low 26 ALIGNMENT 0 Y12-1o21.q1k chr11 252 62 162566 162565 C 191 0.00 1217 reject_low 1 ALIGNMENT 81 Y12-1o21.q1k chr11 333 253 162485 162565 C 81 100.00 1217 reject_low 1 ALIGNMENT 33 Y12-1o21.q1k chr16 192 88 804533 804639 C 105 81.90 1217 reject_low 22 ALIGNMENT 0 Y12-1o21.q1k chr04 331 913 568954 568953 F 583 0.00 1217 reject_low 7 ALIGNMENT 43 Y12-1o21.q1k chr07 187 93 931900 932001 C 95 84.21 1217 reject_low 18 ALIGNMENT 0 Y12-1o21.q1k chr16 62 92 850646 850645 F 31 0.00 1217 reject_low 20 ALIGNMENT 0 Y12-1o21.q1k chr03 187 913 83176 83175 F 727 0.00 1217 reject_low 29 ALIGNMENT 0 Y12-1o21.q1k chr04 62 252 568877 568876 F 191 0.00 1217 reject_low 7 ALIGNMENT 0 Y12-1o21.q1k chr07 913 333 828723 828722 C 581 0.00 1217 reject_low 5 ALIGNMENT 0 Y12-1o21.q1k chr10 62 92 354471 354470 F 31 0.00 1217 reject_low 30 ALIGNMENT 75 Y12-1o21.q1k chr02 253 330 405870 405947 F 78 98.72 1217 reject_low 6 ALIGNMENT 0 Y12-1o21.q1k chr16 87 62 804640 804639 C 26 0.00 1217 reject_low 22 ALIGNMENT 0 Y12-1o21.q1k chr16 188 913 850747 850746 F 726 0.00 1217 reject_low 20 ALIGNMENT 0 Y12-1o21.q1k chr10 331 913 355365 355364 F 583 0.00 1217 reject_low 30 ALIGNMENT 0 Y12-1o21.q1k chr10 252 62 374496 374495 C 191 0.00 1217 reject_low 8 ALIGNMENT 0 Y12-1o21.q1k chr16 913 188 850215 850214 C 726 0.00 1217 reject_low 14 ALIGNMENT 0 Y12-1o21.q1k chr10 186 252 354571 355287 F 67 0.00 1217 reject_low 30 ALIGNMENT 43 Y12-1o21.q1k chr12 93 187 475996 476097 F 95 84.21 1217 reject_low 19 ALIGNMENT 0 Y12-1o21.q1k chr03 89 62 149790 149789 C 28 0.00 1217 reject_low 16 ALIGNMENT 0 Y12-1o21.q1k chr07 333 913 736422 736421 F 581 0.00 1217 reject_low 4 ALIGNMENT 0 Y12-1o21.q1k chr16 188 913 804763 804762 F 726 0.00 1217 reject_low 25 ALIGNMENT 0 Y12-1o21.q1k chr03 188 913 124253 124252 F 726 0.00 1217 reject_low 27 ALIGNMENT 41 Y12-1o21.q1k chr07 187 93 402171 402272 C 95 83.16 1217 reject_low 21 ALIGNMENT 1008 Y12-1o21.p1k chr13 17 1287 743139 744415 F 1271 93.63 1300 accept 0 ALIGNMENT 35 Y12-1o21.q1k chr10 93 185 354471 354570 F 93 81.72 1217 reject_low 30 ALIGNMENT 0 Y12-1o21.q1k chr15 87 62 118024 118023 C 26 0.00 1217 reject_low 12 ALIGNMENT 0 Y12-1o21.q1k chr13 188 913 378406 378405 F 726 0.00 1217 reject_low 11 ALIGNMENT 0 Y12-1o21.q1k chr07 62 252 405471 405470 F 191 0.00 1217 reject_low 3 ALIGNMENT 986 Y12-1o22.p1k chr04 28 1081 166159 167213 F 1054 98.67 1291 accept 0 ALIGNMENT 966 Y12-1o22.q1k chr04 1179 36 170587 171756 C 1144 96.07 1224 accept 0 ALIGNMENT 857 Y12-1o24.p1k chr14 1009 19 344031 345023 C 991 96.37 1254 accept 0 ALIGNMENT 0 Y12-1o24.p1k chr08 166 62 373930 373929 C 105 0.00 1254 reject_low 1 ALIGNMENT 0 Y12-1o24.p1k chr05 655 831 405614 405613 F 177 0.00 1254 reject_low 2 ALIGNMENT 735 Y12-1o24.q1k chr14 37 955 341388 342318 F 919 94.02 1036 accept 0 ALIGNMENT 82 Y12-1o24.p1k chr05 411 654 405371 405614 F 244 79.10 1254 reject_low 2 ALIGNMENT 272 Y12-1o24.p1k chr08 868 167 373228 373929 C 702 80.48 1254 reject_low 1 ALIGNMENT 0 Y12-1o24.p1k chr05 62 410 405371 405370 F 349 0.00 1254 reject_low 2 ALIGNMENT 853 Y12-1p01.q1k chr12 34 966 389410 390337 F 933 97.53 1340 accept 0 ALIGNMENT 711 Y12-1p01.p1k chr12 942 17 392289 393217 C 926 93.74 1285 accept 0 ALIGNMENT 981 Y12-1p02.q1k chr12 41 1153 504334 505460 F 1113 96.86 1232 accept 0 ALIGNMENT 0 Y12-1p02.q1k chr14 677 889 615198 615197 F 213 0.00 1232 reject_low 1 ALIGNMENT 0 Y12-1p02.q1k chr14 62 298 614821 614820 F 237 0.00 1232 reject_low 1 ALIGNMENT 980 Y12-1p02.p1k chr12 1124 16 507722 508839 C 1109 98.29 1322 accept 0 ALIGNMENT 94 Y12-1p02.q1k chr14 299 676 614821 615198 F 378 75.40 1232 reject_low 1 ALIGNMENT 1063 Y12-1p03.p1k chr12 1294 17 797878 799167 C 1278 95.62 1310 accept 0 ALIGNMENT 908 Y12-1p03.q1k chr12 33 1179 794255 795416 F 1147 95.29 1184 accept 0 ALIGNMENT 1017 Y12-1p04.p1k chr05 1226 17 215995 217210 C 1210 95.45 1359 accept 0 ALIGNMENT 1077 Y12-1p04.q1k chr05 35 1244 212111 213323 F 1210 97.52 1268 accept 0 ALIGNMENT 1006 Y12-1p05.p1k chr07 1247 21 101004 102245 C 1227 95.60 1353 accept 0 ALIGNMENT 961 Y12-1p05.q1k chr07 31 1197 98452 99614 F 1167 95.37 1315 accept 0 ALIGNMENT 1025 Y12-1p06.q1k chr02 36 1289 211974 213226 F 1254 95.06 1321 accept 0 ALIGNMENT 43 Y12-1p06.q1k chr02 899 993 212747 212841 F 95 82.11 1321 reject_low 3 ALIGNMENT 0 Y12-1p06.q1k chr02 62 898 212747 212746 F 837 0.00 1321 reject_low 3 ALIGNMENT 0 Y12-1p06.q1k chr02 62 809 212837 212836 F 748 0.00 1321 reject_low 4 ALIGNMENT 55 Y12-1p06.q1k chr02 810 945 212792 212928 F 136 80.88 1321 reject_low 2 ALIGNMENT 1048 Y12-1p06.p1k chr02 1213 22 214814 216019 C 1192 96.81 1408 accept 0 ALIGNMENT 0 Y12-1p06.q1k chr02 62 854 212747 212746 F 793 0.00 1321 reject_low 1 ALIGNMENT 36 Y12-1p06.q1k chr02 810 906 212837 212934 F 97 80.41 1321 reject_low 4 ALIGNMENT 0 Y12-1p06.q1k chr02 62 809 212792 212791 F 748 0.00 1321 reject_low 2 ALIGNMENT 61 Y12-1p06.q1k chr02 855 990 212747 212883 F 136 82.35 1321 reject_low 1 ALIGNMENT 999 Y12-1p07.q1k chr04 37 1235 1009346 1010556 F 1199 95.25 1318 accept 0 ALIGNMENT 974 Y12-1p07.p1k chr04 1154 20 1012455 1013606 C 1135 97.36 1317 accept 0 ALIGNMENT 985 Y12-1p09.p1k chr04 22 1258 367297 368546 F 1237 94.26 1331 accept 0 ALIGNMENT 979 Y12-1p09.q1k chr04 1232 36 371109 372320 C 1197 95.07 1291 accept 0 ALIGNMENT 989 Y12-1p10.q1k chr07 35 1172 590718 591873 F 1138 96.84 1276 accept 0 ALIGNMENT 939 Y12-1p10.p1k chr07 1164 22 595407 596565 C 1143 95.71 1361 accept 0 ALIGNMENT 965 Y12-1p11.p1k chr06 1150 20 31848 32985 C 1131 96.02 1369 accept 0 ALIGNMENT 1016 Y12-1p11.q1k chr06 34 1199 28714 29881 F 1166 96.31 1285 accept 0 ALIGNMENT 154 Y12-1p11.q1k chr02 190 763 801171 801737 F 574 76.48 1285 reject_low 1 ALIGNMENT 0 Y12-1p11.q1k chr02 62 189 801171 801170 F 128 0.00 1285 reject_low 1 ALIGNMENT 0 Y12-1p11.q1k chr02 764 916 801737 801736 F 153 0.00 1285 reject_low 1 ALIGNMENT 975 Y12-1p12.p1k chr05 1128 25 303620 304737 C 1104 96.83 1371 accept_chi 0 ALIGNMENT 1023 Y12-1p12.q1k chr12 1241 30 455748 456949 C 1212 95.79 1298 manual 2 ALIGNMENT 1036 Y12-1p12.q1k chr12 1271 30 464853 466086 C 1242 95.49 1298 manual 1 ALIGNMENT 975 Y12-1p13.p1k chr05 22 1212 410210 411408 F 1191 94.71 1335 accept 0 ALIGNMENT 330 Y12-1p14.p1k chr04 17 682 1330084 1330739 F 666 85.59 1650 accept 0 ALIGNMENT 0 Y12-1p16.q1k chr07 902 571 1067245 1067244 C 332 0.00 1281 reject_low 3 ALIGNMENT 970 Y12-1p16.q1k chr10 1129 37 16208 17316 C 1093 97.80 1281 ambiguous_tel 1 ALIGNMENT 970 Y12-1p16.q1k chr09 1129 37 16225 17333 C 1093 97.80 1281 ambiguous_tel 0 ALIGNMENT 322 Y12-1p16.q1k chr07 570 37 1067244 1067777 C 534 87.45 1281 reject_low 3 ALIGNMENT 0 Y12-1p16.q1k chr15 902 715 22397 22396 C 188 0.00 1281 reject_low 2 ALIGNMENT 979 Y12-1p16.p1k chr09 22 1189 10994 12178 F 1168 95.80 1358 ambiguous_tel 0 ALIGNMENT 612 Y12-1p16.q1k chr15 714 37 22396 23073 C 678 97.49 1281 reject_low 2 ALIGNMENT 979 Y12-1p16.p1k chr10 22 1189 10977 12161 F 1168 95.80 1358 ambiguous_tel 1 ALIGNMENT 935 Y12-1p19.p1k chr11 1104 19 408625 409708 C 1086 96.78 1324 accept 0 ALIGNMENT 957 Y12-1p19.q1k chr11 32 1294 408309 409565 F 1263 93.75 1328 accept 0 ALIGNMENT 0 Y12-1p20.p1k chr07 309 62 817730 817729 C 248 0.00 1353 reject_low 11 ALIGNMENT 38 Y12-1p20.p1k chr16 457 303 810401 810565 C 155 77.42 1353 reject_low 24 ALIGNMENT 0 Y12-1p20.p1k chr13 321 62 463442 463441 C 260 0.00 1353 reject_low 20 ALIGNMENT 72 Y12-1p20.p1k chr04 189 117 520968 521040 C 73 100.00 1353 reject_low 6 ALIGNMENT 1063 Y12-1p20.q1k chr12 1204 36 461119 462284 C 1169 97.43 1298 reject_low 1 ALIGNMENT 0 Y12-1p20.p1k chr04 62 110 802720 802719 F 49 0.00 1353 reject_low 28 ALIGNMENT 92 Y12-1p20.p1k chr02 310 549 226624 226874 F 240 81.25 1353 reject_low 13 ALIGNMENT 0 Y12-1p20.p1k chr16 302 62 810566 810565 C 241 0.00 1353 reject_low 24 ALIGNMENT 79 Y12-1p20.p1k chr03 112 200 168290 168378 F 89 96.63 1353 reject_low 3 ALIGNMENT 0 Y12-1p20.p1k chr08 875 489 134029 134028 C 387 0.00 1353 reject_low 33 ALIGNMENT 68 Y12-1p20.p1k chr10 364 549 204036 204232 F 186 80.65 1353 reject_low 17 ALIGNMENT 21 Y12-1p20.p1k chr08 415 343 134111 134182 C 73 78.08 1353 reject_low 33 ALIGNMENT 0 Y12-1p20.p1k chr11 875 494 457922 457921 C 382 0.00 1353 reject_low 18 ALIGNMENT 0 Y12-1p20.p1k chr13 875 497 463259 463258 C 379 0.00 1353 reject_low 20 ALIGNMENT 0 Y12-1p20.p1k chr03 875 468 142911 142910 C 408 0.00 1353 reject_low 21 ALIGNMENT 0 Y12-1p20.q1k chr12 607 62 490544 490543 C 546 0.00 1298 reject_low 2 ALIGNMENT 0 Y12-1p20.p1k chr04 493 875 803092 803091 F 383 0.00 1353 reject_low 28 ALIGNMENT 71 Y12-1p20.p1k chr16 310 417 849999 850106 F 108 89.81 1353 reject_low 32 ALIGNMENT 28 Y12-1p20.p1k chr16 457 417 850353 850392 C 41 95.12 1353|0,1 reject_low 29,30 ALIGNMENT 62 Y12-1p20.p1k chr09 482 310 197304 197485 C 173 81.50 1353 reject_low 23 ALIGNMENT 0 Y12-1p20.p1k chr09 309 62 197486 197485 C 248 0.00 1353 reject_low 23 ALIGNMENT 74 Y12-1p20.p1k chr04 111 190 802720 802798 F 80 98.75 1353 reject_low 28 ALIGNMENT 0 Y12-1p20.p1k chr04 195 875 645224 645223 F 681 0.00 1353 reject_low 4 ALIGNMENT 0 Y12-1p20.p1k chr07 550 875 931941 931940 F 326 0.00 1353 reject_low 14 ALIGNMENT 0 Y12-1p20.p1k chr04 62 112 645143 645142 F 51 0.00 1353 reject_low 4 ALIGNMENT 0 Y12-1p20.p1k chr02 550 875 265411 265410 F 326 0.00 1353 reject_low 9 ALIGNMENT 25 Y12-1p20.p1k chr16 418 457 850117 850157 F 40 92.50 1353 reject_low 32 ALIGNMENT 0 Y12-1p20.p1k chr04 191 309 802799 802899 F 119 0.00 1353 reject_low 28 ALIGNMENT 0 Y12-1p20.p1k chr04 875 190 520969 520968 C 686 0.00 1353 reject_low 6 ALIGNMENT 0 Y12-1p20.p1k chr10 308 62 204037 204036 C 247 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-1p20.p1k chr16 458 875 844566 844565 F 418 0.00 1353 reject_low 31 ALIGNMENT 74 Y12-1p20.p1k chr04 113 194 645143 645224 F 82 97.56 1353 reject_low 4 ALIGNMENT 0 Y12-1p20.p1k chr16 875 458 810402 810401 C 418 0.00 1353 reject_low 24 ALIGNMENT 0 Y12-1p20.p1k chr02 62 308 259575 259574 F 247 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-1p20.p1k chr03 62 111 168290 168289 F 50 0.00 1353 reject_low 3 ALIGNMENT 86 Y12-1p20.p1k chr11 493 310 457921 458114 C 184 84.78 1353 reject_low 18 ALIGNMENT 0 Y12-1p20.p1k chr16 62 308 844407 844406 F 247 0.00 1353 reject_low 31 ALIGNMENT 0 Y12-1p20.p1k chr13 875 550 362668 362667 C 326 0.00 1353 reject_low 15 ALIGNMENT 0 Y12-1p20.p1k chr08 342 197 134183 134306 C 146 0.00 1353 reject_low 33 ALIGNMENT 92 Y12-1p20.p1k chr13 549 310 362667 362917 C 240 81.25 1353 reject_low 15 ALIGNMENT 0 Y12-1p20.p1k chr11 309 62 458115 458114 C 248 0.00 1353 reject_low 18 ALIGNMENT 37 Y12-1p20.p1k chr08 488 417 134028 134099 C 72 88.89 1353 reject_low 33 ALIGNMENT 0 Y12-1p20.p1k chr16 875 458 850354 850353 C 418 0.00 1353 reject_low 29,30 ALIGNMENT 25 Y12-1p20.p1k chr16 418 457 844526 844566 F 40 92.50 1353 reject_low 31 ALIGNMENT 0 Y12-1p20.p1k chr03 201 875 168378 168377 F 675 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-1p20.p1k chr08 306 62 549641 549640 C 245 0.00 1353 reject_low 8 ALIGNMENT 0 Y12-1p20.p1k chr16 875 458 856393 856392 C 418 0.00 1353 reject_low 27 ALIGNMENT 95 Y12-1p20.p1k chr02 310 549 265161 265411 F 240 81.67 1353 reject_low 9 ALIGNMENT 72 Y12-1p20.p1k chr10 482 333 354600 354759 C 150 85.33 1353 reject_low 22 ALIGNMENT 81 Y12-1p20.p1k chr08 196 112 134307 134391 C 85 98.82 1353 reject_low 33 ALIGNMENT 0 Y12-1p20.p1k chr03 309 62 124463 124462 C 248 0.00 1353 reject_low 19 ALIGNMENT 0 Y12-1p20.p1k chr05 875 190 250286 250285 C 686 0.00 1353 reject_low 5 ALIGNMENT 0 Y12-1p20.p1k chr05 112 62 250362 250361 C 51 0.00 1353 reject_low 5 ALIGNMENT 0 Y12-1p20.p1k chr10 62 309 540680 540679 F 248 0.00 1353 reject_low 16 ALIGNMENT 0 Y12-1p20.p1k chr10 875 458 203879 203878 C 418 0.00 1353 reject_low 25 ALIGNMENT 0 Y12-1p20.p1k chr16 417 418 850392 856442 C 0 0.00 1353 reject_low 30 ALIGNMENT 82 Y12-1p20.p1k chr03 492 310 124270 124462 C 183 84.15 1353 reject_low 19 ALIGNMENT 25 Y12-1p20.p1k chr16 457 418 856392 856432 C 40 92.50 1353 reject_low 27 ALIGNMENT 0 Y12-1p20.p1k chr10 875 483 354601 354600 C 393 0.00 1353 reject_low 22 ALIGNMENT 0 Y12-1p20.p1k chr02 62 309 226624 226623 F 248 0.00 1353 reject_low 13 ALIGNMENT 0 Y12-1p20.p1k chr08 111 62 134392 134391 C 50 0.00 1353 reject_low 33 ALIGNMENT 0 Y12-1p20.p1k chr04 62 309 1175308 1175307 F 248 0.00 1353 reject_low 10 ALIGNMENT 0 Y12-1p20.p1k chr16 417 62 850845 850844 C 356 0.00 1353 reject_low 26 ALIGNMENT 0 Y12-1p20.p1k chr16 418 417 844516 844525 F 0 0.00 1353 reject_low 31 ALIGNMENT 0 Y12-1p20.p1k chr16 62 309 849999 849998 F 248 0.00 1353 reject_low 32 ALIGNMENT 0 Y12-1p20.p1k chr03 308 62 143079 143078 C 247 0.00 1353 reject_low 21 ALIGNMENT 0 Y12-1p20.p1k chr03 875 493 124271 124270 C 383 0.00 1353 reject_low 19 ALIGNMENT 82 Y12-1p20.p1k chr04 310 492 802900 803092 F 183 84.15 1353 reject_low 28 ALIGNMENT 0 Y12-1p20.p1k chr10 550 875 204232 204231 F 326 0.00 1353 reject_low 17 ALIGNMENT 0 Y12-1p20.p1k chr08 416 416 134100 134110 C 1 0.00 1353 reject_low 33 ALIGNMENT 79 Y12-1p20.p1k chr13 496 322 463258 463441 C 175 84.57 1353 reject_low 20 ALIGNMENT 0 Y12-1p20.p1k chr16 418 417 850107 850116 F 0 0.00 1353 reject_low 32 ALIGNMENT 0 Y12-1p20.p1k chr02 62 309 265161 265160 F 248 0.00 1353 reject_low 9 ALIGNMENT 0 Y12-1p20.p1k chr07 875 550 817480 817479 C 326 0.00 1353 reject_low 11 ALIGNMENT 93 Y12-1p20.p1k chr02 309 549 259575 259826 F 241 81.33 1353 reject_low 12 ALIGNMENT 0 Y12-1p20.p1k chr04 116 62 521041 521040 C 55 0.00 1353 reject_low 6 ALIGNMENT 488 Y12-1p20.q1k chr12 1204 608 489950 490543 C 597 94.64 1298 reject_low 2 ALIGNMENT 95 Y12-1p20.p1k chr04 310 549 1175308 1175558 F 240 81.67 1353 reject_low 10 ALIGNMENT 0 Y12-1p20.p1k chr16 458 875 850157 850156 F 418 0.00 1353 reject_low 32 ALIGNMENT 898 Y12-1p20.p1k chr12 23 1040 448555 449576 F 1018 97.25 1353 accept 0 ALIGNMENT 0 Y12-1p20.p1k chr02 556 875 221296 221295 F 320 0.00 1353 reject_low 7 ALIGNMENT 77 Y12-1p20.p1k chr03 467 309 142910 143078 C 159 84.91 1353 reject_low 21 ALIGNMENT 98 Y12-1p20.p1k chr08 549 307 549387 549640 C 243 81.89 1353 reject_low 8 ALIGNMENT 0 Y12-1p20.p1k chr08 875 550 549388 549387 C 326 0.00 1353 reject_low 8 ALIGNMENT 0 Y12-1p20.p1k chr02 550 875 226874 226873 F 326 0.00 1353 reject_low 13 ALIGNMENT 0 Y12-1p20.p1k chr16 309 62 850963 850962 C 248 0.00 1353 reject_low 29 ALIGNMENT 0 Y12-1p20.p1k chr09 875 483 197305 197304 C 393 0.00 1353 reject_low 23 ALIGNMENT 71 Y12-1p20.p1k chr16 417 310 856443 856550 C 108 89.81 1353 reject_low 30 ALIGNMENT 0 Y12-1p20.p1k chr16 417 418 850392 850854 C 0 0.00 1353 reject_low 29 ALIGNMENT 0 Y12-1p20.p1k chr02 62 308 221039 221038 F 247 0.00 1353 reject_low 7 ALIGNMENT 0 Y12-1p20.p1k chr07 62 309 931691 931690 F 248 0.00 1353 reject_low 14 ALIGNMENT 92 Y12-1p20.p1k chr07 310 549 931691 931941 F 240 81.25 1353 reject_low 14 ALIGNMENT 0 Y12-1p20.p1k chr16 309 62 856551 856550 C 248 0.00 1353 reject_low 30 ALIGNMENT 73 Y12-1p20.p1k chr05 189 113 250285 250361 C 77 98.70 1353 reject_low 5 ALIGNMENT 85 Y12-1p20.p1k chr10 310 549 540680 540929 F 240 80.42 1353 reject_low 16 ALIGNMENT 72 Y12-1p20.p1k chr16 309 417 844407 844515 F 109 89.91 1353 reject_low 31 ALIGNMENT 0 Y12-1p20.p1k chr16 417 62 856433 856432 C 356 0.00 1353 reject_low 27 ALIGNMENT 0 Y12-1p20.p1k chr02 550 875 259826 259825 F 326 0.00 1353 reject_low 12 ALIGNMENT 0 Y12-1p20.p1k chr10 62 363 204036 204035 F 302 0.00 1353 reject_low 17 ALIGNMENT 0 Y12-1p20.p1k chr04 550 875 1175558 1175557 F 326 0.00 1353 reject_low 10 ALIGNMENT 36 Y12-1p20.p1k chr10 457 309 203878 204036 C 149 77.18 1353 reject_low 25 ALIGNMENT 95 Y12-1p20.p1k chr07 549 310 817479 817729 C 240 81.67 1353 reject_low 11 ALIGNMENT 1063 Y12-1p20.q1k chr12 1204 36 451982 453147 C 1169 97.43 1298 accept 0 ALIGNMENT 71 Y12-1p20.p1k chr16 417 310 850855 850962 C 108 89.81 1353 reject_low 29 ALIGNMENT 0 Y12-1p20.p1k chr13 309 62 362918 362917 C 248 0.00 1353 reject_low 15 ALIGNMENT 0 Y12-1p20.p1k chr10 332 62 354760 354759 C 271 0.00 1353 reject_low 22 ALIGNMENT 97 Y12-1p20.p1k chr02 309 555 221039 221296 F 247 81.38 1353 reject_low 7 ALIGNMENT 0 Y12-1p20.p1k chr16 875 458 850805 850804 C 418 0.00 1353 reject_low 26 ALIGNMENT 25 Y12-1p20.p1k chr16 457 418 850804 850844 C 40 92.50 1353 reject_low 26 ALIGNMENT 0 Y12-1p20.p1k chr10 550 875 540929 540928 F 326 0.00 1353 reject_low 16 ALIGNMENT 994 Y12-1p21.p1k chr07 18 1193 759568 760740 F 1176 96.00 1292 accept 0 ALIGNMENT 991 Y12-1p21.q1k chr07 1160 35 763869 765002 C 1126 97.07 1220 accept 0 ALIGNMENT 955 Y12-1p21.q1k chr16 1160 35 838004 839137 C 1126 96.00 1220 reject_low 1 ALIGNMENT 985 Y12-1p22.q1k chr14 1202 33 713373 714546 C 1170 95.90 1247 accept 0 ALIGNMENT 0 Y12-1p22.p1k chr03 62 529 275454 275453 F 468 0.00 1348 reject_low 1 ALIGNMENT 1033 Y12-1p22.p1k chr14 18 1283 709582 710854 F 1266 95.18 1348 accept 0 ALIGNMENT 121 Y12-1p22.p1k chr03 530 878 275454 275802 F 349 79.08 1348 reject_low 1 ALIGNMENT 980 Y12-1p23.q1k chr14 35 1150 26995 28125 F 1116 97.22 1188 accept 0 ALIGNMENT 990 Y12-1p23.p1k chr14 1240 18 29555 30774 C 1223 94.85 1256 accept 0 ALIGNMENT 0 Y12-1p24.q1k chr12 62 188 2 1 F 127 0.00 1280 reject_low 12 ALIGNMENT 21 Y12-1p24.q1k chr03 36 169 234 363 F 134 92.54 1280 reject_low 19 ALIGNMENT 0 Y12-1p24.p1k chr16 77 305 944342 944341 F 229 0.00 1349 reject_low 16 ALIGNMENT 0 Y12-1p24.q1k chr09 130 819 73 72 F 690 0.00 1280 reject_low 21 ALIGNMENT 0 Y12-1p24.q1k chr07 323 62 1090944 1090943 C 262 0.00 1280 reject_low 6 ALIGNMENT 21 Y12-1p24.q1k chr09 61 129 5 73 F 69 95.65 1280 reject_low 21 ALIGNMENT 0 Y12-1p24.q1k chr10 153 819 58 57 F 667 0.00 1280 reject_low 23 ALIGNMENT 0 Y12-1p24.p1k chr08 305 77 3568 3567 C 229 0.00 1349 reject_low 15 ALIGNMENT 652 Y12-1p24.q1k chr10 202 1023 3 815 F 822 95.38 1280 ambiguous_tel 1 ALIGNMENT 0 Y12-1p24.p1k chr12 305 77 9371 9370 C 229 0.00 1349 reject_low 14 ALIGNMENT 513 Y12-1p24.q1k chr16 1023 309 947348 948062 C 715 92.59 1280 reject_low 16 ALIGNMENT 540 Y12-1p24.q1k chr13 213 1023 2 813 F 811 91.37 1280 reject_low 13 ALIGNMENT 0 Y12-1p24.p1k chr06 305 77 2873 2872 C 229 0.00 1349 reject_low 17 ALIGNMENT 493 Y12-1p24.p1k chr16 306 1017 944342 945053 F 712 90.17 1349 reject_low 16 ALIGNMENT 523 Y12-1p24.q1k chr12 189 1023 2 829 F 835 90.54 1280 reject_low 12 ALIGNMENT 490 Y12-1p24.p1k chr13 1017 306 3000 3711 C 712 90.03 1349 reject_low 13 ALIGNMENT 21 Y12-1p24.q1k chr10 100 152 5 58 F 53 98.11 1280 reject_low 23 ALIGNMENT 0 Y12-1p24.q1k chr12 390 62 1078175 1078174 C 329 0.00 1280 reject_low 8 ALIGNMENT 490 Y12-1p24.p1k chr12 1017 306 8659 9370 C 712 90.03 1349 reject_low 14 ALIGNMENT 441 Y12-1p24.q1k chr12 1023 391 1077543 1078174 C 633 91.94 1280 reject_low 8 ALIGNMENT 0 Y12-1p24.q1k chr10 62 201 3 2 F 140 0.00 1280 ambiguous_tel 1 ALIGNMENT 0 Y12-1p24.q1k chr05 323 62 576867 576866 C 262 0.00 1280 reject_low 5 ALIGNMENT 759 Y12-1p24.p1k chr05 23 1017 572991 573984 F 995 92.46 1349 reject_low 5 ALIGNMENT 655 Y12-1p24.q1k chr09 188 1023 3 832 F 836 95.22 1280 ambiguous_tel 0 ALIGNMENT 23 Y12-1p24.q1k chr14 266 36 784037 784265 C 231 90.48 1280 reject_low 20 ALIGNMENT 0 Y12-1p24.q1k chr14 62 304 2 1 F 243 0.00 1280 reject_low 4 ALIGNMENT 441 Y12-1p24.q1k chr05 408 1023 2 616 F 616 92.53 1280 reject_low 7 ALIGNMENT 532 Y12-1p24.q1k chr15 1023 246 1090507 1091287 C 778 91.65 1280 reject_low 2 ALIGNMENT 490 Y12-1p24.p1k chr12 1017 306 3124 3835 C 712 90.03 1349 reject_low 12 ALIGNMENT 493 Y12-1p24.p1k chr02 1017 306 3325 4036 C 712 90.31 1349 reject_low 18 ALIGNMENT 508 Y12-1p24.q1k chr05 1023 324 576171 576866 C 700 92.86 1280 reject_low 5 ALIGNMENT 496 Y12-1p24.p1k chr06 1017 306 2161 2872 C 712 90.45 1349 reject_low 17 ALIGNMENT 777 Y12-1p24.p1k chr10 1017 23 3278 4271 C 995 93.17 1349 ambiguous_tel 1 ALIGNMENT 0 Y12-1p24.q1k chr12 255 62 1071652 1071651 C 194 0.00 1280 reject_low 3 ALIGNMENT 756 Y12-1p24.p1k chr04 23 1017 1528162 1529155 F 995 92.36 1349 reject_low 9 ALIGNMENT 20 Y12-1p24.q1k chr08 224 72 556829 556983 C 153 91.50 1280 reject_low 22 ALIGNMENT 0 Y12-1p24.q1k chr14 819 267 784038 784037 C 553 0.00 1280 reject_low 20 ALIGNMENT 508 Y12-1p24.q1k chr07 1023 324 1090248 1090943 C 700 92.86 1280 reject_low 6 ALIGNMENT 759 Y12-1p24.p1k chr07 23 1017 1087068 1088061 F 995 92.46 1349 reject_low 6 ALIGNMENT 528 Y12-1p24.q1k chr12 1023 256 1070880 1071651 C 768 91.67 1280 reject_low 3 ALIGNMENT 759 Y12-1p24.p1k chr14 1017 23 2907 3900 C 995 92.46 1349 reject_low 4 ALIGNMENT 0 Y12-1p24.q1k chr08 819 225 556830 556829 C 595 0.00 1280 reject_low 22 ALIGNMENT 0 Y12-1p24.q1k chr13 62 212 2 1 F 151 0.00 1280 reject_low 13 ALIGNMENT 756 Y12-1p24.p1k chr15 23 1017 1087327 1088320 F 995 92.36 1349 reject_low 2 ALIGNMENT 518 Y12-1p24.q1k chr12 199 1023 5664 6472 F 825 90.67 1280 reject_low 14 ALIGNMENT 0 Y12-1p24.q1k chr10 62 99 5 4 F 38 0.00 1280 reject_low 23 ALIGNMENT 774 Y12-1p24.p1k chr09 1017 23 3295 4288 C 995 92.96 1349 ambiguous_tel 0 ALIGNMENT 0 Y12-1p24.q1k chr03 170 819 363 362 F 650 0.00 1280 reject_low 19 ALIGNMENT 484 Y12-1p24.p1k chr08 1017 306 2856 3567 C 712 89.75 1349 reject_low 15 ALIGNMENT 596 Y12-1p24.q1k chr08 1023 71 561695 562643 C 953 91.19 1280 reject_low 10 ALIGNMENT 493 Y12-1p24.p1k chr08 306 1017 558795 559506 F 712 90.31 1349 reject_low 10 ALIGNMENT 0 Y12-1p24.p1k chr12 305 77 3836 3835 C 229 0.00 1349 reject_low 12 ALIGNMENT 406 Y12-1p24.q1k chr04 1023 458 1531342 1531908 C 566 92.58 1280 reject_low 9 ALIGNMENT 759 Y12-1p24.p1k chr05 1017 23 2971 3964 C 995 92.46 1349 reject_low 7 ALIGNMENT 0 Y12-1p24.p1k chr08 77 305 558795 558794 F 229 0.00 1349 reject_low 10 ALIGNMENT 0 Y12-1p24.q1k chr15 245 62 1091288 1091287 C 184 0.00 1280 reject_low 2 ALIGNMENT 0 Y12-1p24.q1k chr04 457 62 1531909 1531908 C 396 0.00 1280 reject_low 9 ALIGNMENT 756 Y12-1p24.p1k chr12 23 1017 1067700 1068693 F 995 92.36 1349 reject_low 3 ALIGNMENT 514 Y12-1p24.q1k chr14 305 1023 2 720 F 719 92.49 1280 reject_low 4 ALIGNMENT 759 Y12-1p24.p1k chr16 1017 23 2816 3809 C 995 92.46 1349 reject_low 11 ALIGNMENT 747 Y12-1p24.p1k chr12 23 963 1074363 1075302 F 941 93.41 1349 reject_low 8 ALIGNMENT 0 Y12-1p24.q1k chr16 308 62 948063 948062 C 247 0.00 1280 reject_low 16 ALIGNMENT 0 Y12-1p24.p1k chr13 305 77 3712 3711 C 229 0.00 1349 reject_low 13 ALIGNMENT 0 Y12-1p24.q1k chr12 62 198 5664 5663 F 137 0.00 1280 reject_low 14 ALIGNMENT 0 Y12-1p24.p1k chr02 305 77 4037 4036 C 229 0.00 1349 reject_low 18 ALIGNMENT 0 Y12-1p24.q1k chr09 62 187 3 2 F 126 0.00 1280 ambiguous_tel 0 ALIGNMENT 0 Y12-1p24.q1k chr05 62 407 2 1 F 346 0.00 1280 reject_low 7 ALIGNMENT 0 Y12-1p24.q1k chr08 62 232 5 4 F 171 0.00 1280 reject_low 15 ALIGNMENT 531 Y12-1p24.q1k chr08 233 1023 5 797 F 791 91.40 1280 reject_low 15 ALIGNMENT 0 Y12-20a01.q1k chr15 768 183 594354 594353 C 586 0.00 1381 reject_low 1 ALIGNMENT 0 Y12-20a01.q1k chr15 109 62 594426 594425 C 48 0.00 1381 reject_low 1 ALIGNMENT 61 Y12-20a01.q1k chr15 182 110 594353 594425 C 73 94.52 1381 reject_low 1 ALIGNMENT 840 Y12-20a01.p1k chr04 27 964 1252355 1253283 F 938 97.76 1349 accept 0 ALIGNMENT 922 Y12-20a01.q1k chr04 1123 28 1256070 1257151 C 1096 96.26 1381 accept 0 ALIGNMENT 971 Y12-20a02.p1k chr10 1224 19 401295 402535 C 1206 94.61 1248 accept 0 ALIGNMENT 853 Y12-20a02.q1k chr10 30 998 398572 399533 F 969 97.52 1441 accept 0 ALIGNMENT 269 Y12-20a03.q1k chr09 27 343 272361 272674 F 317 96.85 1309 reject_low 1 ALIGNMENT 0 Y12-20a03.q1k chr09 344 630 272674 272673 F 287 0.00 1309 reject_low 1 ALIGNMENT 0 Y12-20a03.q1k chr12 356 62 999795 999794 C 295 0.00 1309 accept 0 ALIGNMENT 208 Y12-20a03.p1k chr09 267 12 276387 276643 C 256 94.53 1396 reject_low 1 ALIGNMENT 0 Y12-20a03.p1k chr12 62 294 996213 996212 F 233 0.00 1396 accept 0 ALIGNMENT 177 Y12-20a03.p1k chr12 295 681 996213 996585 F 387 84.50 1396 accept 0 ALIGNMENT 411 Y12-20a03.q1k chr12 914 357 999228 999794 C 558 92.47 1309 accept 0 ALIGNMENT 1043 Y12-20a04.p1k chr15 18 1197 69865 71057 F 1180 97.12 1262 accept 0 ALIGNMENT 992 Y12-20a04.q1k chr15 1231 34 72838 74052 C 1198 94.91 1393 accept 0 ALIGNMENT 910 Y12-20a05.q1k chr15 1032 28 956942 957960 C 1005 97.71 1337 accept 0 ALIGNMENT 1027 Y12-20a05.p1k chr15 19 1225 953244 954459 F 1207 96.02 1314 accept 0 ALIGNMENT 1042 Y12-20a06.p1k chr09 1246 20 314694 315924 C 1227 95.93 1301 accept 0 ALIGNMENT 524 Y12-20a06.q1k chr09 32 637 310295 310898 F 606 97.19 1387 accept 0 ALIGNMENT 940 Y12-20a07.p1k chr15 1122 21 173440 174557 C 1102 95.92 1292 accept 0 ALIGNMENT 896 Y12-20a07.q1k chr15 38 1089 168500 169564 F 1052 96.01 1353 accept 0 ALIGNMENT 985 Y12-20a08.p1k chr10 29 1169 180078 181238 F 1141 96.76 1276 accept 0 ALIGNMENT 544 Y12-20a08.q1k chr10 659 32 185259 185883 C 628 97.13 1469 accept 0 ALIGNMENT 461 Y12-20a09.p1k chr10 11 497 729039 729526 F 487 98.36 1461 reject_low 2 ALIGNMENT 672 Y12-20a09.q1k chr06 31 853 7638 8466 F 823 95.14 1362 ambiguous_tel 0 ALIGNMENT 265 Y12-20a09.q1k chr07 373 31 1081176 1081517 C 343 93.59 1362 reject_low 4 ALIGNMENT 0 Y12-20a09.q1k chr07 696 374 1081177 1081176 C 323 0.00 1362 reject_low 4 ALIGNMENT 672 Y12-20a09.q1k chr14 31 853 9548 10376 F 823 95.14 1362 ambiguous_tel 1 ALIGNMENT 0 Y12-20a09.q1k chr02 696 360 809936 809935 C 337 0.00 1362 reject_low 5 ALIGNMENT 255 Y12-20a09.q1k chr02 359 31 809935 810261 C 329 93.62 1362 reject_low 5 ALIGNMENT 482 Y12-20a09.p1k chr06 503 11 12908 13401 C 493 99.39 1461 ambiguous_tel 0 ALIGNMENT 479 Y12-20a09.p1k chr14 503 11 14811 15304 C 493 99.19 1461 ambiguous_tel 1 ALIGNMENT 455 Y12-20a09.p1k chr04 497 11 16189 16676 C 487 97.95 1461 reject_low 3 ALIGNMENT 1056 Y12-20a10.p1k chr16 18 1216 413212 414421 F 1199 97.00 1268 accept 0 ALIGNMENT 719 Y12-20a10.q1k chr16 858 31 416622 417450 C 828 96.01 1360 accept 0 ALIGNMENT 1055 Y12-20a11.p1k chr06 19 1222 174431 175655 F 1204 96.93 1283 accept 0 ALIGNMENT 287 Y12-20a11.p1k chr12 1183 136 661490 662552 C 1048 77.10 1283 reject_low 1 ALIGNMENT 906 Y12-20a11.q1k chr06 1034 35 179557 180555 C 1000 98.60 1455 accept 0 ALIGNMENT 0 Y12-20a11.p1k chr12 135 62 662553 662552 C 74 0.00 1283 reject_low 1 ALIGNMENT 375 Y12-20a12.q1k chr11 440 33 555710 556117 C 408 99.26 1427 accept 0 ALIGNMENT 371 Y12-20a12.p1k chr11 20 469 551207 551653 F 450 95.78 1422 accept 0 ALIGNMENT 91 Y12-20a12.q1k chr10 334 440 153422 153528 F 107 95.33 1427 reject_low 2 ALIGNMENT 0 Y12-20a12.q1k chr15 573 62 36368 36367 C 512 0.00 1427 reject_low 1 ALIGNMENT 117 Y12-20a12.q1k chr15 952 574 35988 36367 C 379 80.21 1427 reject_low 1 ALIGNMENT 0 Y12-20a12.q1k chr10 62 333 153422 153421 F 272 0.00 1427 reject_low 2 ALIGNMENT 1028 Y12-20a13.p1k chr12 1217 19 464868 466089 C 1199 95.91 1229 accept 1 ALIGNMENT 877 Y12-20a13.q1k chr12 33 1022 462680 463674 F 990 96.77 1379 accept 1 ALIGNMENT 877 Y12-20a13.q1k chr12 33 1022 453543 454537 F 990 96.77 1379 accept 0 ALIGNMENT 1028 Y12-20a13.p1k chr12 1217 19 455731 456952 C 1199 95.91 1229 accept 0 ALIGNMENT 656 Y12-20a14.p1k chr03 22 933 1699 2608 F 912 91.89 1179 ambiguous_trans 1 ALIGNMENT 978 Y12-20a14.q1k chr14 1172 36 45565 46717 C 1137 95.95 1387 accept 0 ALIGNMENT 1032 Y12-20a15.p1k chr12 1267 20 300340 301591 C 1248 94.87 1328 accept 0 ALIGNMENT 933 Y12-20a15.q1k chr12 33 1104 296790 297865 F 1072 96.92 1395 accept 0 ALIGNMENT 40 Y12-20a16.p1k chr13 192 98 357025 357126 C 95 83.16 1293 reject_low 19 ALIGNMENT 0 Y12-20a16.p1k chr12 824 198 215098 215097 C 627 0.00 1293 reject_low 4 ALIGNMENT 33 Y12-20a16.p1k chr16 93 197 804533 804639 F 105 81.90 1293 reject_low 18 ALIGNMENT 0 Y12-20a16.p1k chr16 198 824 844729 844728 F 627 0.00 1293 reject_low 8 ALIGNMENT 0 Y12-20a16.p1k chr04 62 97 1095977 1095976 F 36 0.00 1293 reject_low 1 ALIGNMENT 0 Y12-20a16.p1k chr07 193 824 932001 932000 F 632 0.00 1293 reject_low 14 ALIGNMENT 41 Y12-20a16.p1k chr05 197 98 498095 498201 C 100 83.00 1293 reject_low 11 ALIGNMENT 0 Y12-20a16.p1k chr16 62 92 804533 804532 F 31 0.00 1293 reject_low 18 ALIGNMENT 34 Y12-20a16.p1k chr07 190 98 568768 568865 C 93 81.72 1293 reject_low 27 ALIGNMENT 0 Y12-20a16.p1k chr07 62 97 402171 402170 F 36 0.00 1293 reject_low 17 ALIGNMENT 43 Y12-20a16.p1k chr07 98 192 931900 932001 F 95 84.21 1293 reject_low 14 ALIGNMENT 0 Y12-20a16.p1k chr03 824 193 168617 168616 C 632 0.00 1293 reject_low 23 ALIGNMENT 41 Y12-20a16.p1k chr07 98 192 402171 402272 F 95 83.16 1293 reject_low 17 ALIGNMENT 0 Y12-20a16.p1k chr16 824 193 804663 804662 C 632 0.00 1293 reject_low 25 ALIGNMENT 0 Y12-20a16.p1k chr07 144 824 817335 817334 F 681 0.00 1293 reject_low 29 ALIGNMENT 0 Y12-20a16.p1k chr03 97 62 124254 124253 C 36 0.00 1293 reject_low 30 ALIGNMENT 44 Y12-20a16.p1k chr07 197 98 817414 817520 C 100 84.00 1293 reject_low 2 ALIGNMENT 34 Y12-20a16.p1k chr16 192 98 810246 810347 C 95 81.05 1293 reject_low 26 ALIGNMENT 0 Y12-20a16.p1k chr04 193 824 1151339 1151338 F 632 0.00 1293 reject_low 28 ALIGNMENT 0 Y12-20a16.p1k chr12 824 192 592731 592730 C 633 0.00 1293 reject_low 10 ALIGNMENT 0 Y12-20a16.p1k chr04 824 193 434442 434441 C 632 0.00 1293 reject_low 21 ALIGNMENT 31 Y12-20a16.p1k chr03 192 98 124152 124253 C 95 80.00 1293 reject_low 30 ALIGNMENT 34 Y12-20a16.p1k chr16 192 98 804662 804763 C 95 81.05 1293 reject_low 25 ALIGNMENT 41 Y12-20a16.p1k chr08 197 98 549322 549428 C 100 83.00 1293 reject_low 12 ALIGNMENT 39 Y12-20a16.p1k chr03 98 143 151726 151771 F 46 95.65 1293 reject_low 22 ALIGNMENT 0 Y12-20a16.p1k chr16 97 62 804764 804763 C 36 0.00 1293 reject_low 25 ALIGNMENT 0 Y12-20a16.p1k chr03 62 92 149680 149679 F 31 0.00 1293 reject_low 13 ALIGNMENT 0 Y12-20a16.p1k chr12 97 62 476098 476097 C 36 0.00 1293 reject_low 15 ALIGNMENT 0 Y12-20a16.p1k chr04 62 97 1151239 1151238 F 36 0.00 1293 reject_low 28 ALIGNMENT 0 Y12-20a16.p1k chr13 824 193 362608 362607 C 632 0.00 1293 reject_low 20 ALIGNMENT 0 Y12-20a16.p1k chr03 97 62 168718 168717 C 36 0.00 1293 reject_low 23 ALIGNMENT 44 Y12-20a16.p1k chr07 197 98 822996 823102 C 100 84.00 1293 reject_low 3 ALIGNMENT 0 Y12-20a16.p1k chr07 62 93 778993 778992 F 32 0.00 1293 reject_low 24 ALIGNMENT 0 Y12-20a16.p1k chr13 97 62 357127 357126 C 36 0.00 1293 reject_low 19 ALIGNMENT 40 Y12-20a16.p1k chr13 192 98 362607 362708 C 95 83.16 1293 reject_low 20 ALIGNMENT 0 Y12-20a16.p1k chr13 824 198 378301 378300 C 627 0.00 1293 reject_low 6 ALIGNMENT 0 Y12-20a16.p1k chr15 198 824 118023 118022 F 627 0.00 1293 reject_low 7 ALIGNMENT 0 Y12-20a16.p1k chr08 97 62 549429 549428 C 36 0.00 1293 reject_low 12 ALIGNMENT 0 Y12-20a16.p1k chr13 824 193 357026 357025 C 632 0.00 1293 reject_low 19 ALIGNMENT 0 Y12-20a16.p1k chr16 97 62 810348 810347 C 36 0.00 1293 reject_low 26 ALIGNMENT 0 Y12-20a16.p1k chr15 62 97 117917 117916 F 36 0.00 1293 reject_low 7 ALIGNMENT 0 Y12-20a16.p1k chr13 97 62 378407 378406 C 36 0.00 1293 reject_low 6 ALIGNMENT 33 Y12-20a16.p1k chr07 98 143 817290 817335 F 46 91.30 1293 reject_low 29 ALIGNMENT 0 Y12-20a16.p1k chr16 198 824 850320 850319 F 627 0.00 1293 reject_low 9 ALIGNMENT 0 Y12-20a16.p1k chr12 824 193 475997 475996 C 632 0.00 1293 reject_low 15 ALIGNMENT 0 Y12-20a16.p1k chr16 62 97 844623 844622 F 36 0.00 1293 reject_low 8 ALIGNMENT 0 Y12-20a16.p1k chr13 97 62 362709 362708 C 36 0.00 1293 reject_low 20 ALIGNMENT 0 Y12-20a16.p1k chr07 97 62 823103 823102 C 36 0.00 1293 reject_low 3 ALIGNMENT 0 Y12-20a16.p1k chr07 62 97 817290 817289 F 36 0.00 1293 reject_low 29 ALIGNMENT 0 Y12-20a16.p1k chr03 62 97 151726 151725 F 36 0.00 1293 reject_low 22 ALIGNMENT 44 Y12-20a16.p1k chr13 197 98 372712 372818 C 100 84.00 1293 reject_low 5 ALIGNMENT 0 Y12-20a16.p1k chr05 824 198 498096 498095 C 627 0.00 1293 reject_low 11 ALIGNMENT 0 Y12-20a16.p1k chr07 97 62 817521 817520 C 36 0.00 1293 reject_low 2 ALIGNMENT 38 Y12-20a16.p1k chr03 93 195 149680 149789 F 103 81.55 1293 reject_low 13 ALIGNMENT 0 Y12-20a16.p1k chr07 97 62 568866 568865 C 36 0.00 1293 reject_low 27 ALIGNMENT 44 Y12-20a16.p1k chr16 98 197 844623 844729 F 100 84.00 1293 reject_low 8 ALIGNMENT 0 Y12-20a16.p1k chr07 824 191 568769 568768 C 634 0.00 1293 reject_low 27 ALIGNMENT 21 Y12-20a16.p1k chr04 197 170 1151360 1151387 C 28 96.43 1293 reject_low 31 ALIGNMENT 0 Y12-20a16.p1k chr07 824 198 817415 817414 C 627 0.00 1293 reject_low 2 ALIGNMENT 44 Y12-20a16.p1k chr16 98 197 850214 850320 F 100 84.00 1293 reject_low 9 ALIGNMENT 825 Y12-20a16.q1k chr13 938 35 751472 752378 C 904 97.90 1343 accept 0 ALIGNMENT 0 Y12-20a16.p1k chr12 92 62 592834 592833 C 31 0.00 1293 reject_low 10 ALIGNMENT 44 Y12-20a16.p1k chr04 98 197 1095977 1096083 F 100 84.00 1293 reject_low 1 ALIGNMENT 1015 Y12-20a16.p1k chr13 25 1253 747956 749189 F 1229 95.61 1293 accept 0 ALIGNMENT 0 Y12-20a16.p1k chr03 824 193 124153 124152 C 632 0.00 1293 reject_low 30 ALIGNMENT 0 Y12-20a16.p1k chr13 824 198 372713 372712 C 627 0.00 1293 reject_low 5 ALIGNMENT 0 Y12-20a16.p1k chr04 169 62 1151388 1151387 C 108 0.00 1293 reject_low 31 ALIGNMENT 0 Y12-20a16.p1k chr03 144 824 151771 151770 F 681 0.00 1293 reject_low 22 ALIGNMENT 44 Y12-20a16.p1k chr12 197 98 215097 215203 C 100 84.00 1293 reject_low 4 ALIGNMENT 32 Y12-20a16.p1k chr04 98 192 1151239 1151339 F 95 81.05 1293 reject_low 28 ALIGNMENT 0 Y12-20a16.p1k chr07 62 97 931900 931899 F 36 0.00 1293 reject_low 14 ALIGNMENT 38 Y12-20a16.p1k chr04 192 97 434441 434542 C 96 82.29 1293 reject_low 21 ALIGNMENT 0 Y12-20a16.p1k chr04 824 198 1151361 1151360 C 627 0.00 1293 reject_low 31 ALIGNMENT 0 Y12-20a16.p1k chr07 824 198 822997 822996 C 627 0.00 1293 reject_low 3 ALIGNMENT 41 Y12-20a16.p1k chr12 191 93 592730 592833 C 99 83.84 1293 reject_low 10 ALIGNMENT 0 Y12-20a16.p1k chr16 824 193 850647 850646 C 632 0.00 1293 reject_low 16 ALIGNMENT 0 Y12-20a16.p1k chr13 97 62 372819 372818 C 36 0.00 1293 reject_low 5 ALIGNMENT 0 Y12-20a16.p1k chr16 198 824 804639 804638 F 627 0.00 1293 reject_low 18 ALIGNMENT 44 Y12-20a16.p1k chr13 197 98 378300 378406 C 100 84.00 1293 reject_low 6 ALIGNMENT 32 Y12-20a16.p1k chr07 94 190 778993 779094 F 97 80.41 1293 reject_low 24 ALIGNMENT 44 Y12-20a16.p1k chr15 98 197 117917 118023 F 100 84.00 1293 reject_low 7 ALIGNMENT 0 Y12-20a16.p1k chr05 97 62 498202 498201 C 36 0.00 1293 reject_low 11 ALIGNMENT 0 Y12-20a16.p1k chr12 97 62 215204 215203 C 36 0.00 1293 reject_low 4 ALIGNMENT 0 Y12-20a16.p1k chr16 62 97 850214 850213 F 36 0.00 1293 reject_low 9 ALIGNMENT 0 Y12-20a16.p1k chr08 824 198 549323 549322 C 627 0.00 1293 reject_low 12 ALIGNMENT 0 Y12-20a16.p1k chr16 824 193 810247 810246 C 632 0.00 1293 reject_low 26 ALIGNMENT 0 Y12-20a16.p1k chr16 97 62 850748 850747 C 36 0.00 1293 reject_low 16 ALIGNMENT 37 Y12-20a16.p1k chr03 192 98 168616 168717 C 95 82.11 1293 reject_low 23 ALIGNMENT 0 Y12-20a16.p1k chr07 193 824 402272 402271 F 632 0.00 1293 reject_low 17 ALIGNMENT 43 Y12-20a16.p1k chr12 192 98 475996 476097 C 95 84.21 1293 reject_low 15 ALIGNMENT 43 Y12-20a16.p1k chr16 192 98 850646 850747 C 95 84.21 1293 reject_low 16 ALIGNMENT 0 Y12-20a16.p1k chr07 191 824 779094 779093 F 634 0.00 1293 reject_low 24 ALIGNMENT 0 Y12-20a16.p1k chr04 198 824 1096083 1096082 F 627 0.00 1293 reject_low 1 ALIGNMENT 0 Y12-20a16.p1k chr03 196 824 149789 149788 F 629 0.00 1293 reject_low 13 ALIGNMENT 0 Y12-20a16.p1k chr04 96 62 434543 434542 C 35 0.00 1293 reject_low 21 ALIGNMENT 164 Y12-20a17.p1k chr08 370 796 360594 361017 F 427 80.80 1300 reject_low 1 ALIGNMENT 208 Y12-20a17.p1k chr12 332 4 928106 928429 C 329 90.58 1300 accept 0 ALIGNMENT 750 Y12-20a17.q1k chr12 30 879 924386 925233 F 850 96.94 1442 accept 0 ALIGNMENT 1101 Y12-20a18.p1k chr02 1256 24 515381 516620 C 1233 97.08 1270 accept 0 ALIGNMENT 1019 Y12-20a18.q1k chr02 36 1201 510939 512121 F 1166 97.26 1389 accept 0 ALIGNMENT 0 Y12-20a19.p1k chr12 62 538 451419 451418 F 477 0.00 1257 reject_low 1 ALIGNMENT 830 Y12-20a19.p1k chr12 17 1191 460014 461241 F 1175 91.57 1257 accept 0 ALIGNMENT 843 Y12-20a19.q1k chr12 951 35 454594 455506 C 917 98.15 1361 reject_low 1 ALIGNMENT 0 Y12-20a19.p1k chr12 62 886 489754 489753 F 825 0.00 1257 reject_low 2 ALIGNMENT 444 Y12-20a19.p1k chr12 539 1191 451419 452104 F 653 90.51 1257 reject_low 1 ALIGNMENT 843 Y12-20a19.q1k chr12 951 35 463731 464643 C 917 98.15 1361 accept 0 ALIGNMENT 159 Y12-20a19.p1k chr12 887 1191 489754 490072 F 305 85.57 1257 reject_low 2 ALIGNMENT 1037 Y12-20a20.q1k chr16 1229 36 74184 75398 C 1194 95.98 1356 accept 0 ALIGNMENT 1011 Y12-20a20.p1k chr16 20 1235 71327 72553 F 1216 95.72 1242 accept 0 ALIGNMENT 1007 Y12-20a21.p1k chr04 1213 20 375428 376626 C 1194 95.98 1244 accept 0 ALIGNMENT 1049 Y12-20a21.q1k chr04 36 1248 371494 372713 F 1213 96.13 1336 accept 0 ALIGNMENT 98 Y12-20a22.p1k chr13 1003 706 923109 923414 C 298 79.19 1229 reject_low 19 ALIGNMENT 159 Y12-20a22.p1k chr16 31 298 7153 7420 F 268 87.69 1229 reject_low 17 ALIGNMENT 702 Y12-20a22.p1k chr14 1215 32 782154 783347 C 1184 88.18 1229 reject_low 4 ALIGNMENT 785 Y12-20a22.p1k chr10 20 1189 7686 8873 F 1170 90.68 1229 ambiguous_tel 1 ALIGNMENT 0 Y12-20a22.p1k chr09 893 154 439014 439013 C 740 0.00 1229 reject_low 14 ALIGNMENT 0 Y12-20a22.p1k chr11 893 485 665308 665307 C 409 0.00 1229 reject_low 18 ALIGNMENT 73 Y12-20a22.p1k chr03 32 182 1029 1178 F 151 85.43 1229 reject_low 13 ALIGNMENT 0 Y12-20a22.p1k chr05 893 248 569451 569450 C 646 0.00 1229 reject_low 12 ALIGNMENT 112 Y12-20a22.p1k chr05 247 20 569450 569675 C 228 85.53 1229 reject_low 12 ALIGNMENT 645 Y12-20a22.p1k chr11 32 1131 739 1845 F 1100 88.27 1229 reject_low 8 ALIGNMENT 701 Y12-20a22.p1k chr12 32 1215 12016 13209 F 1184 88.18 1229 reject_low 5 ALIGNMENT 95 Y12-20a22.p1k chr15 1003 706 1083303 1083610 C 298 78.86 1229 reject_low 16 ALIGNMENT 0 Y12-20a22.p1k chr11 240 97 665549 665546 C 144 0.00 1229 reject_low 18 ALIGNMENT 37 Y12-20a22.p1k chr11 96 31 665547 665612 C 66 92.42 1229 reject_low 18 ALIGNMENT 131 Y12-20a22.p1k chr11 484 241 665307 665548 C 244 86.48 1229 reject_low 18 ALIGNMENT 831 Y12-20a22.p1k chr12 1215 20 1063152 1064359 C 1196 91.39 1229 reject_low 2 ALIGNMENT 788 Y12-20a22.p1k chr09 20 1189 7703 8890 F 1170 90.77 1229 ambiguous_tel 0 ALIGNMENT 0 Y12-20a22.p1k chr13 705 106 923415 923534 C 600 0.00 1229 reject_low 19 ALIGNMENT 94 Y12-20a22.p1k chr16 706 1003 7531 7838 F 298 78.86 1229 reject_low 17 ALIGNMENT 0 Y12-20a22.p1k chr10 893 154 744768 744767 C 740 0.00 1229 reject_low 15 ALIGNMENT 0 Y12-20a22.p1k chr15 62 603 11052 11051 F 542 0.00 1229 reject_low 9 ALIGNMENT 0 Y12-20a22.p1k chr16 299 705 7421 7530 F 407 0.00 1229 reject_low 17 ALIGNMENT 62 Y12-20a22.p1k chr10 153 20 744767 744898 C 134 85.82 1229 reject_low 15 ALIGNMENT 66 Y12-20a22.p1k chr09 153 20 439013 439146 C 134 85.82 1229 reject_low 14 ALIGNMENT 159 Y12-20a22.p1k chr15 298 31 1083721 1083988 C 268 87.69 1229 reject_low 16 ALIGNMENT 0 Y12-20a22.p1k chr03 183 893 1178 1177 F 711 0.00 1229 reject_low 13 ALIGNMENT 21 Y12-20a22.p1k chr13 105 27 923535 923612 C 79 81.01 1229 reject_low 19 ALIGNMENT 149 Y12-20a22.p1k chr15 26 292 772 1037 F 267 86.89 1229 reject_low 11 ALIGNMENT 398 Y12-20a22.p1k chr15 604 1215 11052 11674 F 612 89.71 1229 reject_low 9 ALIGNMENT 640 Y12-20a22.p1k chr04 1215 20 1523468 1524689 C 1196 86.20 1229 reject_low 7 ALIGNMENT 0 Y12-20a22.p1k chr15 705 299 1083611 1083720 C 407 0.00 1229 reject_low 16 ALIGNMENT 827 Y12-20a22.q1k chr09 1103 34 10562 11615 C 1070 94.30 1292 ambiguous_tel 0 ALIGNMENT 175 Y12-20a22.p1k chr03 292 20 315589 315860 C 273 89.38 1229 reject_low 10 ALIGNMENT 0 Y12-20a22.p1k chr15 293 893 1037 1036 F 601 0.00 1229 reject_low 11 ALIGNMENT 710 Y12-20a22.p1k chr01 20 1215 720 1933 F 1196 87.96 1229 reject_low 3 ALIGNMENT 658 Y12-20a22.p1k chr02 31 1215 6538 7731 F 1185 86.84 1229 reject_low 6 ALIGNMENT 0 Y12-20a22.p1k chr03 893 293 315590 315589 C 601 0.00 1229 reject_low 10 ALIGNMENT 827 Y12-20a22.q1k chr10 1103 34 10545 11598 C 1070 94.30 1292 ambiguous_tel 1 ALIGNMENT 938 Y12-20a23.q1k chr16 38 1277 829784 831044 F 1240 92.74 1312 accept 0 ALIGNMENT 1043 Y12-20a23.p1k chr16 1210 21 833355 834548 C 1190 96.64 1223 accept 0 ALIGNMENT 1032 Y12-20a24.p1k chr04 17 1203 1030500 1031688 F 1187 96.80 1203 accept 0 ALIGNMENT 960 Y12-20a24.q1k chr04 1172 39 1034323 1035470 C 1134 96.83 1268 accept 0 ALIGNMENT 605 Y12-20b01.q1k chr16 912 49 375555 376412 C 864 91.09 1496 accept 0 ALIGNMENT 411 Y12-20b02.q1k chr12 31 862 645117 645947 F 832 83.77 1534 accept 0 ALIGNMENT 982 Y12-20b03.p1k chr14 22 1187 259430 260613 F 1166 95.54 1262 accept 0 ALIGNMENT 1057 Y12-20b03.q1k chr14 1295 36 263559 264828 C 1260 95.71 1443 accept 0 ALIGNMENT 0 Y12-20b04.p1k chr12 632 62 647504 647503 C 571 0.00 1239 reject_low 1 ALIGNMENT 912 Y12-20b04.q1k chr12 39 1062 645116 646150 F 1024 97.17 1348 accept 0 ALIGNMENT 989 Y12-20b04.p1k chr12 1113 22 646943 648043 C 1092 97.16 1239 accept 0 ALIGNMENT 21 Y12-20b04.p1k chr12 678 633 647458 647503 C 46 82.61 1239 reject_low 1 ALIGNMENT 0 Y12-20b04.p1k chr12 789 679 647459 647458 C 111 0.00 1239 reject_low 1 ALIGNMENT 805 Y12-20b05.q1k chr09 36 1003 67289 68248 F 968 96.90 1532 accept 0 ALIGNMENT 1116 Y12-20b05.p1k chr09 1298 19 72371 73668 C 1280 96.56 1302 accept 0 ALIGNMENT 461 Y12-20b08.p1k chr06 524 21 235431 235934 C 504 98.41 1333 accept 0 ALIGNMENT 743 Y12-20b08.q1k chr06 35 841 232118 232923 F 807 98.51 1403 accept 0 ALIGNMENT 567 Y12-20b09.p1k chr09 622 1 278232 278850 C 622 97.75 1308 accept_chi 1 ALIGNMENT 764 Y12-20b09.q1k chr09 888 38 407243 408087 C 851 97.53 1505 accept_chi 0 ALIGNMENT 890 Y12-20b11.q1k chr10 37 1104 616983 618066 F 1068 96.25 1346 accept 0 ALIGNMENT 80 Y12-20b11.q1k chr12 879 998 732083 732208 F 120 90.83 1346 reject_low 1 ALIGNMENT 0 Y12-20b11.q1k chr12 62 878 732083 732082 F 817 0.00 1346 reject_low 1 ALIGNMENT 1152 Y12-20b11.p1k chr10 1286 19 620860 622133 C 1268 97.32 1298 accept 0 ALIGNMENT 0 Y12-20b12.q1k chr13 770 589 622165 622164 C 182 0.00 1477 reject_low 1 ALIGNMENT 716 Y12-20b12.p1k chr04 876 2 288580 289446 C 875 95.20 1249 accept 0 ALIGNMENT 0 Y12-20b12.q1k chr04 558 62 1224565 1224564 C 497 0.00 1477 reject_low 2 ALIGNMENT 0 Y12-20b12.q1k chr13 556 62 622196 622195 C 495 0.00 1477 reject_low 1 ALIGNMENT 0 Y12-20b12.q1k chr04 770 585 1224540 1224539 C 186 0.00 1477 reject_low 2 ALIGNMENT 20 Y12-20b12.q1k chr04 584 559 1224539 1224564 C 26 100.00 1477 reject_low 2 ALIGNMENT 801 Y12-20b12.q1k chr04 29 948 284831 285742 F 920 97.39 1477 accept 0 ALIGNMENT 21 Y12-20b12.q1k chr13 588 557 622164 622195 C 32 93.75 1477 reject_low 1 ALIGNMENT 772 Y12-20b13.q1k chr14 28 920 496907 497799 F 893 96.53 1421 accept 0 ALIGNMENT 712 Y12-20b13.p1k chr14 791 1 500159 500946 C 791 97.98 1323 accept 0 ALIGNMENT 575 Y12-20b14.p1k chr09 50 741 107748 108436 F 692 95.95 1415 accept 0 ALIGNMENT 843 Y12-20b14.q1k chr09 992 34 111026 111987 C 959 97.29 1381 accept 0 ALIGNMENT 794 Y12-20b15.p1k chr16 971 29 410098 411027 C 943 96.71 1338 accept 0 ALIGNMENT 914 Y12-20b15.q1k chr16 36 1112 406879 407949 F 1077 96.38 1457 accept 0 ALIGNMENT 0 Y12-20b15.q1k chr02 701 823 607141 607140 F 123 0.00 1457 reject_low 1 ALIGNMENT 0 Y12-20b15.q1k chr02 62 211 606653 606652 F 150 0.00 1457 reject_low 1 ALIGNMENT 391 Y12-20b15.q1k chr02 212 700 606653 607141 F 489 93.66 1457 reject_low 1 ALIGNMENT 878 Y12-20b16.q1k chr11 1056 33 576781 577806 C 1024 96.29 1455 accept_chi 0 ALIGNMENT 693 Y12-20b16.p1k chr04 15 799 155922 156702 F 785 97.20 1372 accept_chi 1 ALIGNMENT 899 Y12-20b17.q1k chr16 34 1144 573392 574498 F 1111 94.96 1424 accept 0 ALIGNMENT 1033 Y12-20b17.p1k chr16 1246 16 578108 579347 C 1231 95.04 1276 accept 0 ALIGNMENT 1074 Y12-20b18.p1k chr06 19 1225 73358 74571 F 1207 96.85 1267 accept 0 ALIGNMENT 21 Y12-20b18.p1k chr09 62 18 105783 105827 C 45 93.33 1267 reject_low 1 ALIGNMENT 880 Y12-20b18.q1k chr06 1102 37 77773 78840 C 1066 94.93 1429 accept 0 ALIGNMENT 0 Y12-20b18.p1k chr09 870 63 105784 105783 C 808 0.00 1267 reject_low 1 ALIGNMENT 995 Y12-20b19.p1k chr16 1217 20 933127 934338 C 1198 95.99 1267 accept 0 ALIGNMENT 695 Y12-20b19.q1k chr16 36 839 930433 931236 F 804 96.27 1339 accept 0 ALIGNMENT 966 Y12-20b20.q1k chr16 36 1219 930433 931638 F 1184 95.02 1342 accept 0 ALIGNMENT 0 Y12-20b20.p1k chr04 1037 62 437432 437431 C 976 0.00 1250 reject_low 1 ALIGNMENT 27 Y12-20b20.p1k chr04 1117 1038 437351 437431 C 80 80.00 1250 reject_low 1 ALIGNMENT 0 Y12-20b20.p1k chr16 62 1037 436972 436971 F 976 0.00 1250 reject_low 2 ALIGNMENT 24 Y12-20b20.p1k chr16 1038 1117 436972 437052 F 80 80.00 1250 reject_low 2 ALIGNMENT 1019 Y12-20b20.p1k chr16 1249 16 933098 934343 C 1234 96.19 1250 accept 0 ALIGNMENT 992 Y12-20b22.p1k chr16 17 1208 873517 874713 F 1192 95.55 1229 accept 0 ALIGNMENT 1023 Y12-20b22.q1k chr16 1263 36 877472 878700 C 1228 95.36 1339 accept 0 ALIGNMENT 991 Y12-20b23.q1k chr13 36 1244 49258 50463 F 1209 95.45 1334 accept 0 ALIGNMENT 1027 Y12-20b23.p1k chr13 1209 15 54040 55237 C 1195 96.40 1211 accept 0 ALIGNMENT 1026 Y12-20b24.q1k chr13 1253 34 112604 113831 C 1220 95.41 1321 accept 0 ALIGNMENT 1033 Y12-20b24.p1k chr13 20 1191 108898 110080 F 1172 97.10 1193 accept 0 ALIGNMENT 54 Y12-20c01.p1k chr08 1123 1045 116096 116175 C 79 89.87 1270 reject_low 6 ALIGNMENT 0 Y12-20c01.p1k chr15 1045 62 354113 354112 C 984 0.00 1270 reject_low 7 ALIGNMENT 56 Y12-20c01.p1k chr14 1045 1125 104804 104885 F 81 90.12 1270 reject_low 4 ALIGNMENT 0 Y12-20c01.p1k chr14 62 1044 104804 104803 F 983 0.00 1270 reject_low 4 ALIGNMENT 952 Y12-20c01.q1k chr04 37 1110 431049 432132 F 1074 97.11 1321 accept 0 ALIGNMENT 65 Y12-20c01.p1k chr04 778 902 437518 437641 F 125 86.40 1270 reject_low 1 ALIGNMENT 131 Y12-20c01.p1k chr04 1259 964 434117 434419 C 296 84.46 1270|0,3 accept 0 ALIGNMENT 0 Y12-20c01.p1k chr04 966 967 434417 434893 C 0 0.00 1270 accept 0 ALIGNMENT 56 Y12-20c01.p1k chr03 1044 1127 295478 295560 F 84 90.48 1270 reject_low 2 ALIGNMENT 0 Y12-20c01.p1k chr04 62 777 437518 437517 F 716 0.00 1270 reject_low 1 ALIGNMENT 53 Y12-20c01.p1k chr15 1123 1046 354034 354112 C 78 89.74 1270 reject_low 7 ALIGNMENT 796 Y12-20c01.p1k chr04 969 20 434891 435828 C 950 96.74 1270|3,0 accept 0 ALIGNMENT 0 Y12-20c01.p1k chr10 1043 62 59175 59174 C 982 0.00 1270 reject_low 3 ALIGNMENT 0 Y12-20c01.p1k chr03 62 1043 295478 295477 F 982 0.00 1270 reject_low 2 ALIGNMENT 54 Y12-20c01.p1k chr09 1045 1125 175027 175107 F 81 90.12 1270 reject_low 5 ALIGNMENT 0 Y12-20c01.p1k chr09 62 1044 175027 175026 F 983 0.00 1270 reject_low 5 ALIGNMENT 56 Y12-20c01.p1k chr10 1124 1044 59093 59174 C 81 90.12 1270 reject_low 3 ALIGNMENT 0 Y12-20c01.p1k chr08 1044 62 116176 116175 C 983 0.00 1270 reject_low 6 ALIGNMENT 999 Y12-20c02.q1k chr16 1136 42 507246 508346 C 1095 97.99 1376 accept 0 ALIGNMENT 801 Y12-20c02.p1k chr16 290 1219 504252 505191 F 930 95.81 1277 accept 0 ALIGNMENT 1009 Y12-20c03.q1k chr12 1201 40 998951 1000121 C 1162 95.35 1392 accept 0 ALIGNMENT 1037 Y12-20c03.p1k chr12 26 1196 995934 997116 F 1171 97.27 1310 accept 0 ALIGNMENT 739 Y12-20c04.p1k chr02 14 832 232903 233717 F 819 98.29 1489 accept_chi 1 ALIGNMENT 998 Y12-20c04.q1k chr13 1107 34 513300 514374 C 1074 98.60 1424 accept_chi 0 ALIGNMENT 0 Y12-20c05.q1k chr12 62 160 720822 720821 F 99 0.00 1419 reject_low 1 ALIGNMENT 290 Y12-20c05.q1k chr12 161 744 720822 721405 F 584 83.73 1419 reject_low 1 ALIGNMENT 0 Y12-20c05.q1k chr12 745 842 721405 721404 F 98 0.00 1419 reject_low 1 ALIGNMENT 944 Y12-20c05.q1k chr15 34 1058 681366 682392 F 1025 98.24 1419 accept 0 ALIGNMENT 473 Y12-20c05.p1k chr15 547 19 685778 686306 C 529 97.54 1380 accept 0 ALIGNMENT 0 Y12-20c06.q1k chr03 272 62 124464 124463 C 211 0.00 1451 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-20c06.q1k chr10 306 62 537949 537948 C 245 0.00 1451 ambiguous_trans_ua 30 ALIGNMENT 292 Y12-20c06.q1k chr02 274 602 9093 9421 F 329 98.48 1451 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-20c06.q1k chr04 603 635 1352962 1352961 F 33 0.00 1451 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-20c06.q1k chr10 607 635 538349 538348 F 29 0.00 1451 ambiguous_trans_ua 3 ALIGNMENT 20 Y12-20c06.q1k chr06 538 595 143869 143927 F 58 82.76 1451 ambiguous_trans 33 ALIGNMENT 0 Y12-20c06.q1k chr05 62 295 449317 449316 F 234 0.00 1451 ambiguous_trans_ua 18 ALIGNMENT 276 Y12-20c06.q1k chr05 602 273 435945 436274 C 330 96.67 1451 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-20c06.q1k chr03 62 273 90437 90436 F 212 0.00 1451 ambiguous_trans 2 ALIGNMENT 295 Y12-20c06.q1k chr07 274 602 811452 811780 F 329 98.78 1451 ambiguous_trans 9 ALIGNMENT 253 Y12-20c06.q1k chr14 274 595 519164 519487 F 322 95.34 1451 ambiguous_trans 21 ALIGNMENT 0 Y12-20c06.q1k chr04 273 62 519644 519643 C 212 0.00 1451 ambiguous_trans 17 ALIGNMENT 253 Y12-20c06.q1k chr14 274 595 524730 525053 F 322 95.34 1451 ambiguous_trans 22 ALIGNMENT 95 Y12-20c06.q1k chr03 269 595 151513 151838 F 327 80.12 1451 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-20c06.q1k chr05 273 62 135940 135939 C 212 0.00 1451 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-20c06.q1k chr12 62 273 941189 941188 F 212 0.00 1451 ambiguous_trans 4 ALIGNMENT 0 Y12-20c06.q1k chr05 62 271 487827 487826 F 210 0.00 1451 ambiguous_trans_ua 1 ALIGNMENT 282 Y12-20c06.q1k chr04 595 274 519322 519643 C 322 98.14 1451 ambiguous_trans 17 ALIGNMENT 0 Y12-20c06.q1k chr07 603 635 811780 811779 F 33 0.00 1451 ambiguous_trans 9 ALIGNMENT 0 Y12-20c06.q1k chr03 273 62 168929 168928 C 212 0.00 1451 ambiguous_trans_ua 20 ALIGNMENT 0 Y12-20c06.q1k chr06 62 273 137908 137907 F 212 0.00 1451 ambiguous_trans 7 ALIGNMENT 0 Y12-20c06.q1k chr08 635 596 91774 91773 C 40 0.00 1451 ambiguous_trans_ua 19 ALIGNMENT 0 Y12-20c06.q1k chr10 635 425 537833 537832 C 211 0.00 1451 ambiguous_trans_ua 30 ALIGNMENT 0 Y12-20c06.q1k chr02 62 273 9093 9092 F 212 0.00 1451 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-20c06.q1k chr12 606 635 947147 947146 F 30 0.00 1451 ambiguous_trans 5 ALIGNMENT 292 Y12-20c06.q1k chr05 272 606 487827 488161 F 335 97.91 1451 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-20c06.q1k chr05 607 635 449627 449626 F 29 0.00 1451 ambiguous_trans_ua 18 ALIGNMENT 0 Y12-20c06.q1k chr04 433 635 1353079 1353078 F 203 0.00 1451 ambiguous_trans_ua 32 ALIGNMENT 289 Y12-20c06.q1k chr12 602 274 981368 981696 C 329 98.18 1451 ambiguous_trans 13 ALIGNMENT 0 Y12-20c06.q1k chr01 273 62 166164 166163 C 212 0.00 1451 ambiguous_trans 24 ALIGNMENT 0 Y12-20c06.q1k chr08 273 62 92096 92095 C 212 0.00 1451 ambiguous_trans_ua 19 ALIGNMENT 0 Y12-20c06.q1k chr13 62 272 768546 768545 F 211 0.00 1451 ambiguous_trans_ua 10 ALIGNMENT 296 Y12-20c06.q1k chr10 274 606 538017 538349 F 333 98.50 1451 ambiguous_trans_ua 3 ALIGNMENT 295 Y12-20c06.q1k chr06 274 602 143535 143863 F 329 98.78 1451 ambiguous_trans 8 ALIGNMENT 285 Y12-20c06.q1k chr15 274 598 970282 970606 F 325 98.15 1451 ambiguous_trans 15 ALIGNMENT 0 Y12-20c06.q1k chr12 606 635 941520 941519 F 30 0.00 1451 ambiguous_trans 4 ALIGNMENT 194 Y12-20c06.q1k chr01 595 274 165837 166163 C 322 89.44 1451 ambiguous_trans 24 ALIGNMENT 289 Y12-20c06.q1k chr04 274 602 1352634 1352962 F 329 98.18 1451 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-20c06.q1k chr01 635 596 165838 165837 C 40 0.00 1451 ambiguous_trans 24 ALIGNMENT 0 Y12-20c06.q1k chr06 62 340 137718 137717 F 279 0.00 1451 ambiguous_trans 33 ALIGNMENT 0 Y12-20c06.q1k chr06 534 537 137900 143868 F 4 0.00 1451 ambiguous_trans 33 ALIGNMENT 0 Y12-20c06.q1k chr14 62 273 519164 519163 F 212 0.00 1451 ambiguous_trans 21 ALIGNMENT 0 Y12-20c06.q1k chr13 603 635 768875 768874 F 33 0.00 1451 ambiguous_trans_ua 10 ALIGNMENT 0 Y12-20c06.q1k chr05 268 62 449322 449321 C 207 0.00 1451 ambiguous_trans 25 ALIGNMENT 0 Y12-20c06.q1k chr04 635 596 519323 519322 C 40 0.00 1451 ambiguous_trans 17 ALIGNMENT 0 Y12-20c06.q1k chr03 607 635 90769 90768 F 29 0.00 1451 ambiguous_trans 2 ALIGNMENT 0 Y12-20c06.q1k chr06 62 273 143535 143534 F 212 0.00 1451 ambiguous_trans 8 ALIGNMENT 0 Y12-20c06.q1k chr06 596 635 143927 143926 F 40 0.00 1451 ambiguous_trans 33 ALIGNMENT 154 Y12-20c06.q1k chr05 448 269 449142 449321 C 180 97.78 1451 ambiguous_trans 25 ALIGNMENT 0 Y12-20c06.q1k chr15 62 273 975909 975908 F 212 0.00 1451 ambiguous_trans 14 ALIGNMENT 295 Y12-20c06.q1k chr06 274 602 137908 138236 F 329 98.78 1451 ambiguous_trans 7 ALIGNMENT 0 Y12-20c06.q1k chr03 62 306 149513 149512 F 245 0.00 1451 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-20c06.q1k chr03 62 268 151513 151512 F 207 0.00 1451 ambiguous_trans_ua 26 ALIGNMENT 298 Y12-20c06.q1k chr12 274 605 946816 947147 F 332 98.80 1451 ambiguous_trans 5 ALIGNMENT 0 Y12-20c06.q1k chr06 603 635 143863 143862 F 33 0.00 1451 ambiguous_trans 8 ALIGNMENT 259 Y12-20c06.q1k chr03 595 274 168605 168928 C 322 95.96 1451 ambiguous_trans_ua 20 ALIGNMENT 194 Y12-20c06.q1k chr01 595 274 160249 160575 C 322 89.44 1451 ambiguous_trans 23 ALIGNMENT 0 Y12-20c06.q1k chr02 425 635 9000 8999 F 211 0.00 1451 ambiguous_trans_ua 31 ALIGNMENT 61 Y12-20c06.q1k chr03 554 274 142798 143077 C 281 77.22 1451 ambiguous_trans_ua 29 ALIGNMENT 293 Y12-20c06.q1k chr05 606 274 135607 135939 C 333 98.20 1451 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-20c06.q1k chr02 603 635 9421 9420 F 33 0.00 1451 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-20c06.q1k chr05 272 62 436275 436274 C 211 0.00 1451 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-20c06.q1k chr07 62 273 811452 811451 F 212 0.00 1451 ambiguous_trans 9 ALIGNMENT 291 Y12-20c06.q1k chr13 273 602 768546 768875 F 330 98.18 1451 ambiguous_trans_ua 10 ALIGNMENT 580 Y12-20c06.p1k chr15 678 5 468078 468748 C 674 96.88 1344 accept 0 ALIGNMENT 0 Y12-20c06.q1k chr14 596 635 525053 525052 F 40 0.00 1451 ambiguous_trans 22 ALIGNMENT 0 Y12-20c06.q1k chr14 596 635 519487 519486 F 40 0.00 1451 ambiguous_trans 21 ALIGNMENT 0 Y12-20c06.q1k chr15 62 273 970282 970281 F 212 0.00 1451 ambiguous_trans 15 ALIGNMENT 27 Y12-20c06.q1k chr04 314 432 1352962 1353079 F 119 78.15 1451 ambiguous_trans_ua 32 ALIGNMENT 0 Y12-20c06.q1k chr05 607 635 488161 488160 F 29 0.00 1451 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-20c06.q1k chr03 273 62 143078 143077 C 212 0.00 1451 ambiguous_trans_ua 29 ALIGNMENT 281 Y12-20c06.q1k chr08 595 274 91773 92095 C 322 98.14 1451 ambiguous_trans_ua 19 ALIGNMENT 65 Y12-20c06.q1k chr03 307 582 149513 149784 F 276 78.26 1451 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-20c06.q1k chr15 602 635 976236 976235 F 34 0.00 1451 ambiguous_trans 14 ALIGNMENT 0 Y12-20c06.q1k chr03 635 555 142799 142798 C 81 0.00 1451 ambiguous_trans_ua 29 ALIGNMENT 0 Y12-20c06.q1k chr05 635 449 449143 449142 C 187 0.00 1451 ambiguous_trans 25 ALIGNMENT 0 Y12-20c06.q1k chr04 62 313 1352962 1352961 F 252 0.00 1451 ambiguous_trans_ua 32 ALIGNMENT 0 Y12-20c06.q1k chr14 62 273 524730 524729 F 212 0.00 1451 ambiguous_trans 22 ALIGNMENT 0 Y12-20c06.q1k chr01 635 596 160250 160249 C 40 0.00 1451 ambiguous_trans 23 ALIGNMENT 0 Y12-20c06.q1k chr04 62 273 1352634 1352633 F 212 0.00 1451 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-20c06.q1k chr02 62 322 8899 8898 F 261 0.00 1451 ambiguous_trans_ua 31 ALIGNMENT 28 Y12-20c06.q1k chr02 323 424 8899 9000 F 102 79.41 1451 ambiguous_trans_ua 31 ALIGNMENT 0 Y12-20c06.q1k chr10 62 273 538017 538016 F 212 0.00 1451 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-20c06.q1k chr03 596 635 151838 151837 F 40 0.00 1451 ambiguous_trans_ua 26 ALIGNMENT 299 Y12-20c06.q1k chr03 274 606 90437 90769 F 333 98.80 1451 ambiguous_trans 2 ALIGNMENT 0 Y12-20c06.q1k chr12 273 62 981697 981696 C 212 0.00 1451 ambiguous_trans 13 ALIGNMENT 0 Y12-20c06.q1k chr03 583 635 149784 149783 F 53 0.00 1451 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-20c06.q1k chr03 635 596 168606 168605 C 40 0.00 1451 ambiguous_trans_ua 20 ALIGNMENT 288 Y12-20c06.q1k chr15 274 601 975909 976236 F 328 98.17 1451 ambiguous_trans 14 ALIGNMENT 0 Y12-20c06.q1k chr05 635 603 435946 435945 C 33 0.00 1451 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-20c06.q1k chr03 635 596 124142 124141 C 40 0.00 1451 ambiguous_trans_ua 27 ALIGNMENT 298 Y12-20c06.q1k chr12 274 605 941189 941520 F 332 98.80 1451 ambiguous_trans 4 ALIGNMENT 88 Y12-20c06.q1k chr03 595 273 124141 124463 C 323 79.26 1451 ambiguous_trans_ua 27 ALIGNMENT 39 Y12-20c06.q1k chr06 341 533 137718 137899 F 193 78.24 1451 ambiguous_trans 33 ALIGNMENT 0 Y12-20c06.q1k chr12 62 273 946816 946815 F 212 0.00 1451 ambiguous_trans 5 ALIGNMENT 0 Y12-20c06.q1k chr15 599 635 970606 970605 F 37 0.00 1451 ambiguous_trans 15 ALIGNMENT 0 Y12-20c06.q1k chr06 603 635 138236 138235 F 33 0.00 1451 ambiguous_trans 7 ALIGNMENT 0 Y12-20c06.q1k chr12 635 603 981369 981368 C 33 0.00 1451 ambiguous_trans 13 ALIGNMENT 42 Y12-20c06.q1k chr10 424 307 537832 537948 C 118 81.36 1451 ambiguous_trans_ua 30 ALIGNMENT 0 Y12-20c06.q1k chr05 635 607 135608 135607 C 29 0.00 1451 ambiguous_trans_ua 6 ALIGNMENT 267 Y12-20c06.q1k chr05 296 606 449317 449627 F 311 97.43 1451 ambiguous_trans_ua 18 ALIGNMENT 0 Y12-20c06.q1k chr01 273 62 160576 160575 C 212 0.00 1451 ambiguous_trans 23 ALIGNMENT 603 Y12-20c08.q1k chr02 34 724 711081 711768 F 691 97.25 1454 accept 0 ALIGNMENT 613 Y12-20c08.p1k chr02 715 26 715142 715828 C 690 97.25 1377 accept 0 ALIGNMENT 0 Y12-20c09.p1k chr09 118 62 340036 340035 C 57 0.00 1643 reject_low 1 ALIGNMENT 602 Y12-20c09.q1k chr13 34 685 754659 755310 F 652 98.16 1452 accept 0 ALIGNMENT 434 Y12-20c09.p1k chr13 518 32 760103 760590 C 487 97.13 1643 accept 0 ALIGNMENT 110 Y12-20c09.p1k chr09 490 119 339664 340035 C 372 76.61 1643 reject_low 1 ALIGNMENT 385 Y12-20c10.p1k chr03 39 491 198977 199427 F 453 95.58 1369 reject_low 1 ALIGNMENT 382 Y12-20c10.p1k chr03 39 491 11820 12270 F 453 95.36 1369 accept 0 ALIGNMENT 513 Y12-20c10.q1k chr03 718 28 15035 15718 C 691 93.78 1458 accept 0 ALIGNMENT 614 Y12-20c11.p1k chr11 1 657 48127 48782 F 657 98.17 1268 accept 0 ALIGNMENT 681 Y12-20c11.q1k chr11 846 30 51753 52563 C 817 96.21 1446 accept 0 ALIGNMENT 874 Y12-20c12.q1k chr15 1056 35 35875 36908 C 1022 97.26 1332 accept 0 ALIGNMENT 940 Y12-20c12.p1k chr15 38 1216 32168 33358 F 1179 94.57 1291 accept 0 ALIGNMENT 887 Y12-20c13.p1k chr16 18 1033 748700 749730 F 1016 97.15 1235 accept 0 ALIGNMENT 795 Y12-20c13.q1k chr16 952 32 752764 753692 C 921 96.53 1392 accept 0 ALIGNMENT 826 Y12-20c14.q1k chr13 30 929 589109 590003 F 900 98.78 1454 accept 0 ALIGNMENT 1087 Y12-20c14.p1k chr13 1309 16 592228 593516 C 1294 95.13 1320 accept 0 ALIGNMENT 1069 Y12-20c15.p1k chr12 1260 22 562080 563328 C 1239 95.96 1321 accept 0 ALIGNMENT 909 Y12-20c15.q1k chr12 32 1099 557750 558827 F 1068 95.97 1417 accept 0 ALIGNMENT 1052 Y12-20c16.p1k chr02 27 1271 780694 781946 F 1245 95.58 1313 accept 0 ALIGNMENT 903 Y12-20c16.q1k chr02 1092 35 785421 786482 C 1058 96.31 1377 accept 0 ALIGNMENT 975 Y12-20c17.q1k chr08 1204 40 362954 364133 C 1165 95.79 1377 accept 0 ALIGNMENT 959 Y12-20c17.p1k chr08 18 1226 360222 361439 F 1209 94.54 1309 accept 0 ALIGNMENT 705 Y12-20c18.p1k chr07 816 3 137396 138206 C 814 96.56 1330 accept 0 ALIGNMENT 842 Y12-20c18.q1k chr07 34 957 134126 135047 F 924 98.27 1445 accept 0 ALIGNMENT 860 Y12-20c19.q1k chr16 33 1000 519994 520964 F 968 97.21 1352 accept 0 ALIGNMENT 903 Y12-20c19.p1k chr16 1099 23 522980 524071 C 1077 96.01 1233 accept 0 ALIGNMENT 1021 Y12-20c20.q1k chr07 41 1215 368196 369382 F 1175 96.26 1408 accept 0 ALIGNMENT 966 Y12-20c20.p1k chr07 1200 16 372409 373600 C 1185 94.85 1268 accept 0 ALIGNMENT 1024 Y12-20c22.p1k chr10 21 1241 181768 182993 F 1221 94.84 1264 accept 0 ALIGNMENT 998 Y12-20c22.q1k chr10 1161 37 185641 186777 C 1125 96.89 1344 accept 0 ALIGNMENT 1003 Y12-20c23.q1k chr10 40 1225 581948 583144 F 1186 96.37 1318 accept 0 ALIGNMENT 1008 Y12-20c23.p1k chr10 1207 18 585934 587121 C 1190 95.63 1241 accept 0 ALIGNMENT 1085 Y12-20d01.q1k chr16 1264 39 375193 376420 C 1226 96.90 1448 accept 0 ALIGNMENT 1027 Y12-20d01.p1k chr16 18 1269 370104 371361 F 1252 94.81 1276 accept 0 ALIGNMENT 542 Y12-20d02.p1k chr08 780 11 83878 84641 C 770 91.43 1346 accept_chi 0 ALIGNMENT 183 Y12-20d02.q1k chr16 333 852 507030 507544 F 520 80.00 1447 accept_chi 1 ALIGNMENT 625 Y12-20d05.p1k chr15 2 672 526580 527248 F 671 99.11 1439 accept 0 ALIGNMENT 0 Y12-20d05.p1k chr14 103 62 423019 423018 C 42 0.00 1439 reject_low 1 ALIGNMENT 807 Y12-20d05.q1k chr15 902 31 529876 530745 C 872 98.62 1503 accept 0 ALIGNMENT 51 Y12-20d05.p1k chr14 581 104 422541 423018 C 478 71.55 1439 reject_low 1 ALIGNMENT 626 Y12-20d07.q1k chr15 744 31 618846 619556 C 714 96.50 1436 accept 0 ALIGNMENT 945 Y12-20d07.p1k chr15 20 1136 615086 616216 F 1117 96.15 1275 accept 0 ALIGNMENT 0 Y12-20d08.q1k chr15 459 302 806952 806951 C 158 0.00 1314 accept 0 ALIGNMENT 102 Y12-20d08.q1k chr15 724 460 806689 806951 C 265 81.89 1314 accept 0 ALIGNMENT 317 Y12-20d08.q1k chr08 2 441 339634 340071 F 440 91.14 1314 reject_low 1 ALIGNMENT 949 Y12-20d08.p1k chr15 18 1183 801982 803161 F 1166 94.85 1269 accept 0 ALIGNMENT 0 Y12-20d10.p1k chr12 460 756 472582 472581 F 297 0.00 1311 reject_low 4 ALIGNMENT 0 Y12-20d10.p1k chr12 62 340 472464 472463 F 279 0.00 1311 reject_low 4 ALIGNMENT 0 Y12-20d10.p1k chr12 475 756 489481 489480 F 282 0.00 1311 reject_low 3 ALIGNMENT 426 Y12-20d10.p1k chr12 15 459 468485 468930 F 445 99.55 1311 reject_low 2 ALIGNMENT 31 Y12-20d10.p1k chr12 847 1034 460217 460394 F 188 79.26 1311 reject_bad_break 0 ALIGNMENT 465 Y12-20d10.q1k chr12 556 27 455857 456381 C 530 97.17 1714 reject_low 1 ALIGNMENT 465 Y12-20d10.q1k chr12 556 27 464994 465518 C 530 97.17 1714 reject_bad_break 0 ALIGNMENT 0 Y12-20d10.p1k chr12 62 340 489348 489347 F 279 0.00 1311 reject_low 3 ALIGNMENT 0 Y12-20d10.p1k chr12 62 340 485696 485695 F 279 0.00 1311 reject_low 6 ALIGNMENT 0 Y12-20d10.p1k chr12 460 756 482162 482161 F 297 0.00 1311 reject_low 5 ALIGNMENT 119 Y12-20d10.p1k chr12 341 459 472464 472582 F 119 100.00 1311 reject_low 4 ALIGNMENT 128 Y12-20d10.p1k chr12 341 474 489348 489481 F 134 98.51 1311 reject_low 3 ALIGNMENT 0 Y12-20d10.p1k chr06 756 82 31623 31622 C 675 0.00 1311 reject_low 7 ALIGNMENT 0 Y12-20d10.p1k chr12 62 340 482044 482043 F 279 0.00 1311 reject_low 5 ALIGNMENT 0 Y12-20d10.p1k chr12 844 846 460198 460216 F 3 0.00 1311 reject_bad_break 0 ALIGNMENT 119 Y12-20d10.p1k chr12 341 459 482044 482162 F 119 100.00 1311 reject_low 5 ALIGNMENT 701 Y12-20d10.p1k chr12 15 843 459348 460197 F 829 96.50 1311 reject_bad_break 0 ALIGNMENT 52 Y12-20d10.p1k chr06 81 15 31622 31689 C 67 95.52 1311 reject_low 7 ALIGNMENT 0 Y12-20d10.p1k chr12 460 756 468930 468929 F 297 0.00 1311 reject_low 2 ALIGNMENT 119 Y12-20d10.p1k chr12 341 459 485696 485814 F 119 100.00 1311 reject_low 6 ALIGNMENT 0 Y12-20d10.p1k chr12 460 756 485814 485813 F 297 0.00 1311 reject_low 6 ALIGNMENT 602 Y12-20d11.p1k chr13 684 5 129553 130230 C 680 97.21 1370 accept 0 ALIGNMENT 52 Y12-20d11.p1k chr13 112 42 130048 130118 C 71 95.77 1370 reject_low 1 ALIGNMENT 51 Y12-20d11.p1k chr13 187 117 130123 130193 C 71 95.77 1370 reject_low 2 ALIGNMENT 585 Y12-20d11.q1k chr13 31 712 124352 125028 F 682 96.33 1484 accept 0 ALIGNMENT 0 Y12-20d11.p1k chr13 583 188 130124 130123 C 396 0.00 1370 reject_low 2 ALIGNMENT 0 Y12-20d11.p1k chr13 583 113 130049 130048 C 471 0.00 1370 reject_low 1 ALIGNMENT 0 Y12-20d11.p1k chr13 116 62 130194 130193 C 55 0.00 1370 reject_low 2 ALIGNMENT 0 Y12-20d13.p1k chr12 576 62 490544 490543 C 515 0.00 1385 reject_low 3 ALIGNMENT 212 Y12-20d13.p1k chr12 900 577 490232 490543 C 324 91.05 1385 reject_low 3 ALIGNMENT 774 Y12-20d13.p1k chr12 900 14 452264 453139 C 887 96.84 1385 reject_low 2 ALIGNMENT 774 Y12-20d13.p1k chr12 900 14 461401 462276 C 887 96.84 1385 accept 0 ALIGNMENT 906 Y12-20d13.q1k chr12 26 1131 458329 459440 F 1106 95.75 1399 accept 0 ALIGNMENT 906 Y12-20d13.q1k chr12 26 1131 467466 468577 F 1106 95.75 1399 reject_low 1 ALIGNMENT 0 Y12-20d14.p1k chr06 265 62 31730 31729 C 204 0.00 1306 reject_low 4 ALIGNMENT 890 Y12-20d14.q1k chr12 1001 29 462877 463846 C 973 97.64 1414 accept 0 ALIGNMENT 0 Y12-20d14.p1k chr12 62 632 482044 482043 F 571 0.00 1306 reject_low 6 ALIGNMENT 119 Y12-20d14.p1k chr12 633 751 472464 472582 F 119 100.00 1306 reject_low 5 ALIGNMENT 0 Y12-20d14.p1k chr12 62 632 489348 489347 F 571 0.00 1306 reject_low 3 ALIGNMENT 119 Y12-20d14.p1k chr12 633 751 485696 485814 F 119 100.00 1306 reject_low 7 ALIGNMENT 94 Y12-20d14.p1k chr06 373 266 31622 31729 C 108 98.15 1306 reject_low 4 ALIGNMENT 817 Y12-20d14.p1k chr12 18 1074 459060 460130 F 1057 94.32 1306 accept 0 ALIGNMENT 0 Y12-20d14.p1k chr06 751 374 31623 31622 C 378 0.00 1306 reject_low 4 ALIGNMENT 702 Y12-20d14.p1k chr12 18 751 468197 468930 F 734 99.73 1306 reject_low 2 ALIGNMENT 890 Y12-20d14.q1k chr12 1001 29 453740 454709 C 973 97.64 1414 reject_low 1 ALIGNMENT 119 Y12-20d14.p1k chr12 633 751 482044 482162 F 119 100.00 1306 reject_low 6 ALIGNMENT 0 Y12-20d14.p1k chr12 62 632 472464 472463 F 571 0.00 1306 reject_low 5 ALIGNMENT 0 Y12-20d14.p1k chr12 62 632 485696 485695 F 571 0.00 1306 reject_low 7 ALIGNMENT 128 Y12-20d14.p1k chr12 633 766 489348 489481 F 134 98.51 1306 reject_low 3 ALIGNMENT 81 Y12-20d16.p1k chr15 298 427 594630 594759 F 130 90.00 1379 reject_low 37 ALIGNMENT 0 Y12-20d16.p1k chr07 62 179 931691 931690 F 118 0.00 1379 reject_low 33 ALIGNMENT 584 Y12-20d16.q1k chr16 31 805 852348 853123 F 775 93.16 1318 reject_low 14 ALIGNMENT 695 Y12-20d16.q1k chr14 805 31 522569 523344 C 775 97.94 1318 reject_low 11 ALIGNMENT 695 Y12-20d16.q1k chr13 31 805 358721 359496 F 775 97.94 1318 ambiguous_trans 0 ALIGNMENT 0 Y12-20d16.p1k chr07 489 503 817387 817386 F 15 0.00 1379 reject_low 38 ALIGNMENT 0 Y12-20d16.p1k chr01 179 62 160576 160575 C 118 0.00 1379 reject_low 36 ALIGNMENT 0 Y12-20d16.p1k chr07 62 177 535762 535761 F 116 0.00 1379 reject_low 6 ALIGNMENT 309 Y12-20d16.p1k chr02 180 511 226624 226955 F 332 99.70 1379 reject_low 30 ALIGNMENT 554 Y12-20d16.q1k chr07 805 31 539191 539966 C 775 91.87 1318 reject_low 6,10 ALIGNMENT 339 Y12-20d16.p1k chr02 180 588 259576 259984 F 409 95.84 1379 reject_low 5 ALIGNMENT 309 Y12-20d16.p1k chr13 511 180 357004 357335 C 332 99.70 1379 reject_low 31 ALIGNMENT 677 Y12-20d16.q1k chr07 31 805 819115 819890 F 775 97.16 1318 reject_low 3 ALIGNMENT 0 Y12-20d16.p1k chr13 179 62 357336 357335 C 118 0.00 1379 reject_low 31 ALIGNMENT 288 Y12-20d16.p1k chr11 511 180 457783 458114 C 332 97.59 1379 reject_low 34 ALIGNMENT 0 Y12-20d16.p1k chr14 179 62 96942 96941 C 118 0.00 1379 reject_low 32 ALIGNMENT 548 Y12-20d16.q1k chr05 31 805 445115 445890 F 775 91.61 1318 reject_low 20 ALIGNMENT 336 Y12-20d16.p1k chr08 588 180 549229 549637 C 409 95.60 1379 reject_low 4 ALIGNMENT 0 Y12-20d16.p1k chr15 428 503 594759 594758 F 76 0.00 1379 reject_low 37 ALIGNMENT 569 Y12-20d16.q1k chr12 805 31 596570 597345 C 775 92.52 1318 reject_low 15 ALIGNMENT 365 Y12-20d16.p1k chr14 588 179 102115 102524 C 410 97.80 1379 ambiguous_trans 2 ALIGNMENT 551 Y12-20d16.q1k chr04 805 31 1210117 1210892 C 775 91.74 1318 reject_low 16 ALIGNMENT 668 Y12-20d16.q1k chr05 31 805 494214 494989 F 775 96.77 1318 reject_low 12 ALIGNMENT 0 Y12-20d16.p1k chr07 179 62 823312 823311 C 118 0.00 1379 reject_low 3 ALIGNMENT 306 Y12-20d16.p1k chr07 180 511 535215 535546 F 332 99.40 1379 reject_low 10 ALIGNMENT 342 Y12-20d16.p1k chr07 588 180 822903 823311 C 409 96.09 1379 reject_low 3 ALIGNMENT 662 Y12-20d16.q1k chr12 31 805 216804 217579 F 775 96.52 1318 reject_low 13 ALIGNMENT 300 Y12-20d16.p1k chr14 511 180 96610 96941 C 332 98.80 1379 reject_low 32 ALIGNMENT 551 Y12-20d16.q1k chr12 805 31 654251 655026 C 775 91.74 1318 reject_low 18 ALIGNMENT 0 Y12-20d16.p1k chr07 62 376 817278 817277 F 315 0.00 1379 reject_low 38 ALIGNMENT 0 Y12-20d16.p1k chr14 178 62 102525 102524 C 117 0.00 1379 ambiguous_trans 2 ALIGNMENT 293 Y12-20d16.p1k chr07 180 513 931691 932024 F 334 97.90 1379 reject_low 33 ALIGNMENT 370 Y12-20d16.p1k chr04 180 628 802900 803347 F 449 95.77 1379 reject_low 26 ALIGNMENT 548 Y12-20d16.q1k chr13 805 31 199758 200533 C 775 91.61 1318 reject_low 22 ALIGNMENT 536 Y12-20d16.q1k chr16 31 805 806360 807135 F 775 91.10 1318 reject_low 24 ALIGNMENT 0 Y12-20d16.p1k chr10 62 178 472376 472375 F 117 0.00 1379 reject_low 7 ALIGNMENT 0 Y12-20d16.p1k chr01 178 62 166165 166164 C 117 0.00 1379 reject_low 28 ALIGNMENT 548 Y12-20d16.q1k chr15 805 31 121129 121904 C 775 91.61 1318 reject_low 23 ALIGNMENT 683 Y12-20d16.q1k chr14 31 805 98327 99102 F 775 97.42 1318 ambiguous_trans 2 ALIGNMENT 665 Y12-20d16.q1k chr08 31 805 545327 546102 F 775 96.65 1318 reject_low 4 ALIGNMENT 698 Y12-20d16.q1k chr02 805 31 224463 225238 C 775 98.06 1318 ambiguous_trans 1 ALIGNMENT 57 Y12-20d16.p1k chr07 377 488 817278 817387 F 112 86.61 1379 reject_low 38 ALIGNMENT 399 Y12-20d16.p1k chr13 628 180 362469 362917 C 449 97.77 1379 ambiguous_trans 0 ALIGNMENT 551 Y12-20d16.q1k chr12 31 805 477697 478472 F 775 91.74 1318 reject_low 17 ALIGNMENT 551 Y12-20d16.q1k chr13 31 805 374419 375194 F 775 91.74 1318 reject_low 19 ALIGNMENT 0 Y12-20d16.p1k chr02 62 179 259576 259575 F 118 0.00 1379 reject_low 5 ALIGNMENT 0 Y12-20d16.p1k chr15 62 297 594630 594629 F 236 0.00 1379 reject_low 37 ALIGNMENT 285 Y12-20d16.p1k chr07 491 180 817418 817729 C 312 99.36 1379 reject_low 35 ALIGNMENT 536 Y12-20d16.q1k chr16 805 31 847838 848613 C 775 91.10 1318 reject_low 25 ALIGNMENT 348 Y12-20d16.p1k chr07 178 606 535762 536196 F 429 95.34 1379 reject_low 6 ALIGNMENT 0 Y12-20d16.p1k chr13 62 179 184170 184169 F 118 0.00 1379 reject_low 9 ALIGNMENT 0 Y12-20d16.p1k chr11 177 62 517429 517428 C 116 0.00 1379 reject_low 29 ALIGNMENT 554 Y12-20d16.q1k chr10 805 31 481388 482163 C 775 91.87 1318 reject_low 7 ALIGNMENT 0 Y12-20d16.p1k chr04 62 179 802900 802899 F 118 0.00 1379 reject_low 26 ALIGNMENT 0 Y12-20d16.p1k chr04 62 179 1095762 1095761 F 118 0.00 1379 reject_low 27 ALIGNMENT 0 Y12-20d16.p1k chr14 62 179 102549 102548 F 118 0.00 1379 reject_low 39 ALIGNMENT 0 Y12-20d16.p1k chr08 179 62 549638 549637 C 118 0.00 1379 reject_low 4 ALIGNMENT 659 Y12-20d16.q1k chr02 805 31 262997 263775 C 775 96.52 1318 reject_low 5 ALIGNMENT 312 Y12-20d16.p1k chr11 511 178 517095 517428 C 334 99.70 1379 reject_low 29 ALIGNMENT 0 Y12-20d16.p1k chr07 179 62 817730 817729 C 118 0.00 1379 reject_low 35 ALIGNMENT 386 Y12-20d16.p1k chr02 180 628 221040 221490 F 449 96.88 1379 ambiguous_trans 1 ALIGNMENT 313 Y12-20d16.p1k chr04 180 588 1095762 1096176 F 409 93.89 1379 reject_low 27 ALIGNMENT 29 Y12-20d16.p1k chr14 180 209 102549 102578 F 30 100.00 1379 reject_low 39 ALIGNMENT 0 Y12-20d16.p1k chr02 62 179 221040 221039 F 118 0.00 1379 ambiguous_trans 1 ALIGNMENT 342 Y12-20d16.p1k chr15 180 588 594821 595229 F 409 96.09 1379 reject_low 8 ALIGNMENT 548 Y12-20d16.q1k chr10 805 31 475804 476579 C 775 91.61 1318 reject_low 21 ALIGNMENT 213 Y12-20d16.p1k chr01 511 180 160239 160575 C 332 90.36 1379 reject_low 36 ALIGNMENT 0 Y12-20d16.p1k chr15 62 179 594821 594820 F 118 0.00 1379 reject_low 8 ALIGNMENT 563 Y12-20d16.q1k chr15 805 31 598242 599017 C 775 92.26 1318 reject_low 8 ALIGNMENT 0 Y12-20d16.p1k chr14 210 503 102578 102577 F 294 0.00 1379 reject_low 39 ALIGNMENT 536 Y12-20d16.q1k chr13 805 31 187591 188366 C 775 91.10 1318 reject_low 9 ALIGNMENT 336 Y12-20d16.p1k chr13 180 588 184170 184578 F 409 95.60 1379 reject_low 9 ALIGNMENT 0 Y12-20d16.p1k chr07 62 179 535215 535214 F 118 0.00 1379 reject_low 10 ALIGNMENT 347 Y12-20d16.p1k chr10 179 606 472376 472809 F 428 95.33 1379 reject_low 7 ALIGNMENT 0 Y12-20d16.p1k chr11 179 62 458115 458114 C 118 0.00 1379 reject_low 34 ALIGNMENT 288 Y12-20d16.p1k chr01 606 179 165732 166164 C 428 90.89 1379 reject_low 28 ALIGNMENT 0 Y12-20d16.p1k chr13 179 62 362918 362917 C 118 0.00 1379 ambiguous_trans 0 ALIGNMENT 0 Y12-20d16.p1k chr02 62 179 226624 226623 F 118 0.00 1379 reject_low 30 ALIGNMENT 863 Y12-20d17.p1k chr10 971 19 81128 82078 C 953 97.90 1343 accept 0 ALIGNMENT 1004 Y12-20d17.q1k chr10 35 1202 77216 78380 F 1168 96.75 1412 accept 0 ALIGNMENT 1027 Y12-20d21.q1k chr04 1252 36 224506 225742 C 1217 96.06 1358 accept 0 ALIGNMENT 0 Y12-20d21.p1k chr04 184 891 130487 130486 F 708 0.00 1273 reject_low 1 ALIGNMENT 69 Y12-20d21.p1k chr04 87 183 130391 130487 F 97 94.85 1273 reject_low 1 ALIGNMENT 1040 Y12-20d21.p1k chr04 26 1222 221647 222850 F 1197 96.41 1273 accept 0 ALIGNMENT 0 Y12-20d21.p1k chr04 62 86 130391 130390 F 25 0.00 1273 reject_low 1 ALIGNMENT 0 Y12-20d22.p1k chr04 863 520 884319 884318 C 344 0.00 1248 reject_low 1 ALIGNMENT 981 Y12-20d22.q1k chr12 1167 37 609842 610986 C 1131 95.93 1335 accept 0 ALIGNMENT 0 Y12-20d22.p1k chr04 332 62 884505 884504 C 271 0.00 1248 reject_low 1 ALIGNMENT 949 Y12-20d22.p1k chr12 21 1230 604976 606197 F 1210 94.13 1248 accept 0 ALIGNMENT 172 Y12-20d22.p1k chr04 519 333 884318 884504 C 187 97.86 1248 reject_low 1 ALIGNMENT 656 Y12-20d23.q1k chr14 33 747 617995 618710 F 715 98.46 1348 accept_chi 1 ALIGNMENT 966 Y12-20d23.p1k chr12 1210 23 606003 607200 C 1188 93.77 1212 accept_chi 0 ALIGNMENT 410 Y12-20d24.p1k chr02 26 459 3603 4036 F 434 98.16 1256 reject_low 12 ALIGNMENT 410 Y12-20d24.p1k chr16 459 26 944342 944775 C 434 98.16 1256 reject_low 16 ALIGNMENT 0 Y12-20d24.p1k chr06 460 922 2873 2868 F 463 0.00 1256 reject_low 13 ALIGNMENT 0 Y12-20d24.p1k chr12 460 922 9371 9366 F 463 0.00 1256 reject_low 18 ALIGNMENT 29 Y12-20d24.p1k chr06 923 975 2869 2918 F 53 88.68 1256 reject_low 13 ALIGNMENT 872 Y12-20d24.p1k chr15 1028 26 1087049 1088042 C 1003 96.31 1256 ambiguous_tel 10 ALIGNMENT 0 Y12-20d24.p1k chr12 460 922 3836 3831 F 463 0.00 1256 reject_low 17 ALIGNMENT 875 Y12-20d24.p1k chr12 1028 26 1067422 1068415 C 1003 96.41 1256 ambiguous_tel 5 ALIGNMENT 0 Y12-20d24.p1k chr16 922 460 944346 944341 C 463 0.00 1256 reject_low 16 ALIGNMENT 407 Y12-20d24.p1k chr12 26 459 3402 3835 F 434 97.93 1256 reject_low 17 ALIGNMENT 29 Y12-20d24.p1k chr02 923 975 4033 4082 F 53 88.68 1256 reject_low 12 ALIGNMENT 875 Y12-20d24.p1k chr07 1028 26 1086790 1087783 C 1003 96.41 1256 ambiguous_tel 4 ALIGNMENT 823 Y12-20d24.p1k chr05 18 1028 3239 4261 F 1011 94.66 1256 ambiguous_tel 11 ALIGNMENT 410 Y12-20d24.p1k chr08 26 459 3134 3567 F 434 98.16 1256 reject_low 14 ALIGNMENT 26 Y12-20d24.p1k chr13 923 967 3708 3750 F 45 88.89 1256 reject_low 19 ALIGNMENT 875 Y12-20d24.p1k chr05 1028 26 572713 573706 C 1003 96.41 1256 ambiguous_tel 3 ALIGNMENT 872 Y12-20d24.p1k chr12 1028 26 1074085 1075078 C 1003 96.31 1256 ambiguous_tel 9 ALIGNMENT 875 Y12-20d24.p1k chr14 26 1028 3185 4178 F 1003 96.41 1256 ambiguous_tel 6 ALIGNMENT 872 Y12-20d24.p1k chr04 1028 26 1527884 1528877 C 1003 96.31 1256 ambiguous_tel 8 ALIGNMENT 0 Y12-20d24.p1k chr08 922 460 558799 558794 C 463 0.00 1256 reject_low 15 ALIGNMENT 29 Y12-20d24.p1k chr08 975 923 558749 558798 C 53 88.68 1256 reject_low 15 ALIGNMENT 899 Y12-20d24.p1k chr09 26 1028 3573 4566 F 1003 97.21 1256 ambiguous_tel 2 ALIGNMENT 875 Y12-20d24.p1k chr16 26 1028 3094 4087 F 1003 96.41 1256 ambiguous_tel 7 ALIGNMENT 0 Y12-20d24.p1k chr08 460 922 3568 3563 F 463 0.00 1256 reject_low 14 ALIGNMENT 29 Y12-20d24.p1k chr12 923 975 3832 3881 F 53 88.68 1256 reject_low 17 ALIGNMENT 407 Y12-20d24.p1k chr12 26 459 8937 9370 F 434 97.93 1256 reject_low 18 ALIGNMENT 410 Y12-20d24.p1k chr06 26 459 2439 2872 F 434 98.16 1256 reject_low 13 ALIGNMENT 902 Y12-20d24.p1k chr10 26 1028 3556 4549 F 1003 97.31 1256 ambiguous_tel 1 ALIGNMENT 29 Y12-20d24.p1k chr16 975 923 944296 944345 C 53 88.68 1256 reject_low 16 ALIGNMENT 29 Y12-20d24.p1k chr12 923 975 9367 9416 F 53 88.68 1256 reject_low 18 ALIGNMENT 0 Y12-20d24.p1k chr13 460 922 3712 3707 F 463 0.00 1256 reject_low 19 ALIGNMENT 29 Y12-20d24.p1k chr08 923 975 3564 3613 F 53 88.68 1256 reject_low 14 ALIGNMENT 944 Y12-20d24.q1k chr02 1123 34 193117 194219 C 1090 96.24 1299 accept 0 ALIGNMENT 410 Y12-20d24.p1k chr08 459 26 558795 559228 C 434 98.16 1256 reject_low 15 ALIGNMENT 407 Y12-20d24.p1k chr13 26 459 3278 3711 F 434 97.93 1256 reject_low 19 ALIGNMENT 0 Y12-20d24.p1k chr02 460 922 4037 4032 F 463 0.00 1256 reject_low 12 ALIGNMENT 659 Y12-20e01.q1k chr09 743 32 193394 194105 C 712 98.17 1442 accept 0 ALIGNMENT 101 Y12-20e02.q1k chr12 632 745 451419 451533 F 114 96.49 1300 reject_low 1 ALIGNMENT 508 Y12-20e02.q1k chr12 35 745 459921 460670 F 711 92.26 1300 accept 0 ALIGNMENT 0 Y12-20e02.q1k chr12 62 631 451419 451418 F 570 0.00 1300 reject_low 1 ALIGNMENT 1037 Y12-20e02.p1k chr12 1198 20 463277 464463 C 1179 96.44 1276 accept 0 ALIGNMENT 1037 Y12-20e02.p1k chr12 1198 20 454140 455326 C 1179 96.44 1276 reject_low 1 ALIGNMENT 897 Y12-20e03.q1k chr14 39 1052 31989 33008 F 1014 97.24 1377 accept 0 ALIGNMENT 1047 Y12-20e03.p1k chr14 1266 20 35080 36340 C 1247 95.43 1302 accept 0 ALIGNMENT 1023 Y12-20e04.q1k chr15 27 1223 329581 330790 F 1197 96.24 1404 accept_chi 1 ALIGNMENT 1055 Y12-20e04.p1k chr07 19 1263 938004 939261 F 1245 96.06 1285 accept_chi 0 ALIGNMENT 1009 Y12-20e05.p1k chr16 1177 20 121187 122360 C 1158 97.24 1302 accept 0 ALIGNMENT 993 Y12-20e05.q1k chr16 37 1218 117913 119106 F 1182 96.19 1450 accept 0 ALIGNMENT 995 Y12-20e07.p1k chr15 1247 22 634769 636010 C 1226 94.62 1304 accept 0 ALIGNMENT 871 Y12-20e07.q1k chr15 31 1093 633265 634330 F 1063 95.30 1401 accept 0 ALIGNMENT 890 Y12-20e09.q1k chr13 32 1072 889218 890258 F 1041 96.45 1415 accept 0 ALIGNMENT 774 Y12-20e09.p1k chr13 892 12 893840 894719 C 881 97.73 1338 accept 0 ALIGNMENT 705 Y12-20e10.q1k chr10 801 31 52838 53610 C 771 98.31 1369 accept 0 ALIGNMENT 619 Y12-20e10.p1k chr10 20 687 47371 48038 F 668 98.80 1626 accept 0 ALIGNMENT 980 Y12-20e11.q1k chr11 1112 31 508029 509118 C 1082 97.78 1393 accept 0 ALIGNMENT 813 Y12-20e11.p1k chr11 14 954 504684 505625 F 941 96.49 1359 accept 0 ALIGNMENT 761 Y12-20e12.p1k chr10 13 867 703097 703946 F 855 97.54 1466 accept 0 ALIGNMENT 806 Y12-20e12.q1k chr10 924 28 707431 708325 C 897 97.88 1459 accept 0 ALIGNMENT 854 Y12-20e13.p1k chr03 30 1121 205554 206650 F 1092 95.51 1305 accept 0 ALIGNMENT 897 Y12-20e13.q1k chr03 1087 28 210188 211251 C 1060 95.47 1474 accept 0 ALIGNMENT 979 Y12-20e14.q1k chr02 1115 35 217796 218887 C 1081 98.15 1375 accept 0 ALIGNMENT 1029 Y12-20e14.p1k chr02 19 1228 214278 215496 F 1210 95.70 1315 accept 0 ALIGNMENT 823 Y12-20e15.p1k chr05 16 1011 305738 306723 F 996 95.78 1333 accept 0 ALIGNMENT 985 Y12-20e15.q1k chr05 1147 38 309483 310603 C 1110 97.57 1407 accept 0 ALIGNMENT 152 Y12-20e17.p1k chr14 387 215 136770 136942 C 173 95.95 1270 reject_low 1 ALIGNMENT 996 Y12-20e17.q1k chr14 1197 34 142030 143198 C 1164 96.48 1414 accept 0 ALIGNMENT 0 Y12-20e17.p1k chr14 214 62 136943 136942 C 153 0.00 1270 reject_low 1 ALIGNMENT 0 Y12-20e17.p1k chr14 813 388 136771 136770 C 426 0.00 1270 reject_low 1 ALIGNMENT 948 Y12-20e17.p1k chr14 17 1119 139189 140292 F 1103 96.65 1270 accept 0 ALIGNMENT 752 Y12-20e19.p1k chr07 16 846 967907 968738 F 831 97.23 1296 accept_chi 1 ALIGNMENT 998 Y12-20e19.q1k chr13 26 1223 149607 150818 F 1198 95.49 1406 accept_chi 0 ALIGNMENT 350 Y12-20e20.p1k chr07 17 532 206575 207073 F 516 91.86 1008 accept_chi 1 ALIGNMENT 896 Y12-20e20.q1k chr08 28 1081 277047 278088 F 1054 96.58 1439 accept_chi 0 ALIGNMENT 1038 Y12-20e21.q1k chr15 1287 35 474038 475296 C 1253 95.85 1405 accept 0 ALIGNMENT 991 Y12-20e21.p1k chr15 21 1194 470141 471321 F 1174 96.25 1257 accept 0 ALIGNMENT 1053 Y12-20e22.q1k chr06 1240 28 196794 198019 C 1213 96.37 1379 accept 0 ALIGNMENT 940 Y12-20e22.p1k chr06 20 1201 193635 194839 F 1182 94.42 1234 accept 0 ALIGNMENT 0 Y12-20e23.p1k chr08 987 62 365407 365406 C 926 0.00 1258 reject_low 2 ALIGNMENT 0 Y12-20e23.p1k chr15 987 62 428033 428032 C 926 0.00 1258 reject_low 5 ALIGNMENT 959 Y12-20e23.q1k chr10 1161 34 142134 143278 C 1128 96.28 1304 accept 0 ALIGNMENT 20 Y12-20e23.p1k chr15 1008 988 428012 428032 C 21 100.00 1258 reject_low 5 ALIGNMENT 20 Y12-20e23.p1k chr08 1011 988 365383 365406 C 24 95.83 1258 reject_low 2 ALIGNMENT 0 Y12-20e23.p1k chr08 987 62 252944 252943 C 926 0.00 1258 reject_low 1 ALIGNMENT 0 Y12-20e23.p1k chr13 62 987 248141 248140 F 926 0.00 1258 reject_low 4 ALIGNMENT 20 Y12-20e23.p1k chr13 988 1008 248141 248161 F 21 100.00 1258 reject_low 4 ALIGNMENT 22 Y12-20e23.p1k chr08 1010 988 252921 252943 C 23 100.00 1258 reject_low 1 ALIGNMENT 0 Y12-20e23.p1k chr08 987 62 365449 365448 C 926 0.00 1258 reject_low 3 ALIGNMENT 20 Y12-20e23.p1k chr08 1011 988 365425 365448 C 24 95.83 1258 reject_low 3 ALIGNMENT 1076 Y12-20e23.p1k chr10 15 1253 137917 139164 F 1239 96.93 1258 accept 0 ALIGNMENT 957 Y12-20e24.q1k chr10 40 1139 694118 695230 F 1100 96.91 1299 accept 0 ALIGNMENT 986 Y12-20e24.p1k chr10 1184 19 698801 699948 C 1166 96.31 1278 accept 0 ALIGNMENT 784 Y12-20f01.p1k chr11 994 7 378058 379032 C 988 95.75 1388 accept 0 ALIGNMENT 659 Y12-20f01.q1k chr11 29 753 373934 374658 F 725 97.79 1465 accept 0 ALIGNMENT 961 Y12-20f02.p1k chr08 1176 11 170305 171466 C 1166 95.71 1296 accept 0 ALIGNMENT 897 Y12-20f02.q1k chr08 36 1092 167363 168438 F 1057 96.22 1312 accept 0 ALIGNMENT 953 Y12-20f03.q1k chr07 1204 35 598735 599918 C 1170 95.04 1441 accept_chi 0 ALIGNMENT 907 Y12-20f03.p1k chr04 28 1139 570639 571763 F 1112 94.96 1235 accept_chi 1 ALIGNMENT 739 Y12-20f04.q1k chr14 37 859 164627 165448 F 823 97.45 1457 accept 0 ALIGNMENT 553 Y12-20f04.p1k chr14 591 1 168060 168649 C 591 98.48 1287 accept 0 ALIGNMENT 0 Y12-20f05.q1k chr04 852 62 520665 520664 C 791 0.00 1418 reject_low 23 ALIGNMENT 177 Y12-20f05.q1k chr08 1031 724 133680 133992 C 308 88.31 1418 reject_low 11 ALIGNMENT 0 Y12-20f05.q1k chr02 725 62 226944 226943 C 664 0.00 1418 reject_low 1 ALIGNMENT 0 Y12-20f05.p1k chr04 835 586 525099 525098 C 250 0.00 1293 accept 0 ALIGNMENT 0 Y12-20f05.q1k chr16 734 62 844725 844724 C 673 0.00 1418 reject_low 16 ALIGNMENT 0 Y12-20f05.q1k chr01 62 723 160249 160248 F 662 0.00 1418 reject_low 17 ALIGNMENT 56 Y12-20f05.q1k chr06 1040 723 137907 138230 C 318 76.73 1418 reject_low 24 ALIGNMENT 0 Y12-20f05.q1k chr06 779 62 137908 137907 C 718 0.00 1418 reject_low 22 ALIGNMENT 21 Y12-20f05.q1k chr08 763 835 133607 133679 F 73 78.08 1418|0,2 reject_low 29 ALIGNMENT 259 Y12-20f05.p1k chr04 585 30 525098 525650 C 556 84.53 1293 accept 0 ALIGNMENT 0 Y12-20f05.q1k chr04 62 197 519641 519640 F 136 0.00 1418 accept 0 ALIGNMENT 168 Y12-20f05.q1k chr15 1036 735 117705 118018 C 302 88.08 1418 reject_low 15 ALIGNMENT 0 Y12-20f05.q1k chr08 723 62 133993 133992 C 662 0.00 1418 reject_low 11 ALIGNMENT 38 Y12-20f05.q1k chr08 832 928 134003 134099 F 97 83.51 1418|2,0 reject_low 29 ALIGNMENT 40 Y12-20f05.q1k chr04 888 1036 519486 519640 F 149 79.19 1418 reject_low 27 ALIGNMENT 192 Y12-20f05.q1k chr15 1040 735 600402 600713 C 306 90.20 1418 reject_low 2 ALIGNMENT 188 Y12-20f05.q1k chr13 1036 735 184173 184480 C 302 90.07 1418 reject_low 9 ALIGNMENT 0 Y12-20f05.q1k chr09 62 723 197146 197145 F 662 0.00 1418 reject_low 21 ALIGNMENT 0 Y12-20f05.q1k chr12 62 723 475985 475984 F 662 0.00 1418 reject_low 18 ALIGNMENT 168 Y12-20f05.q1k chr04 1036 735 1095765 1096078 C 302 88.08 1418 reject_low 13 ALIGNMENT 0 Y12-20f05.q1k chr15 734 62 595132 595131 C 673 0.00 1418 reject_low 7 ALIGNMENT 192 Y12-20f05.q1k chr16 1036 724 560481 560799 C 313 89.78 1418 reject_low 3 ALIGNMENT 62 Y12-20f05.q1k chr15 915 798 594642 594759 C 118 86.44 1418 reject_low 26 ALIGNMENT 0 Y12-20f05.q1k chr06 717 62 158681 158680 C 656 0.00 1418 reject_low 20 ALIGNMENT 0 Y12-20f05.q1k chr11 62 725 517107 517106 F 664 0.00 1418 reject_low 6 ALIGNMENT 138 Y12-20f05.q1k chr01 724 1036 165837 166160 F 313 84.35 1418 reject_low 19 ALIGNMENT 0 Y12-20f05.q1k chr08 62 723 116426 116425 F 662 0.00 1418 reject_low 10 ALIGNMENT 168 Y12-20f05.q1k chr16 1036 735 844411 844724 C 302 88.08 1418 reject_low 16 ALIGNMENT 0 Y12-20f05.q1k chr06 722 62 138231 138230 C 661 0.00 1418 reject_low 24 ALIGNMENT 0 Y12-20f05.q1k chr06 722 62 143858 143857 C 661 0.00 1418 reject_low 25 ALIGNMENT 0 Y12-20f05.q1k chr02 734 62 259887 259886 C 673 0.00 1418 reject_low 8 ALIGNMENT 0 Y12-20f05.q1k chr01 62 723 165837 165836 F 662 0.00 1418 reject_low 19 ALIGNMENT 117 Y12-20f05.q1k chr09 724 1036 197146 197482 F 313 82.11 1418 reject_low 21 ALIGNMENT 0 Y12-20f05.q1k chr15 734 62 600714 600713 C 673 0.00 1418 reject_low 2 ALIGNMENT 26 Y12-20f05.q1k chr13 929 898 378664 378695 C 32 96.88 1418 reject_low 28 ALIGNMENT 0 Y12-20f05.q1k chr07 725 62 535535 535534 C 664 0.00 1418 reject_low 5 ALIGNMENT 191 Y12-20f05.q1k chr02 1040 726 226623 226943 C 315 89.52 1418 reject_low 1 ALIGNMENT 0 Y12-20f05.q1k chr13 734 62 184481 184480 C 673 0.00 1418 reject_low 9 ALIGNMENT 189 Y12-20f05.q1k chr08 735 1040 543631 543942 F 306 89.87 1418 reject_low 4 ALIGNMENT 0 Y12-20f05.q1k chr13 897 62 378696 378695 C 836 0.00 1418 reject_low 28 ALIGNMENT 165 Y12-20f05.q1k chr05 1036 724 138224 138543 C 313 86.90 1418 reject_low 12 ALIGNMENT 168 Y12-20f05.q1k chr13 735 1036 378305 378618 F 302 88.08 1418 reject_low 14 ALIGNMENT 0 Y12-20f05.q1k chr13 62 734 378305 378304 F 673 0.00 1418 reject_low 14 ALIGNMENT 191 Y12-20f05.q1k chr15 1036 735 594824 595131 C 302 90.40 1418 reject_low 7 ALIGNMENT 190 Y12-20f05.q1k chr07 1036 726 535218 535534 C 311 89.71 1418 reject_low 5 ALIGNMENT 0 Y12-20f05.q1k chr15 797 62 594760 594759 C 736 0.00 1418 reject_low 26 ALIGNMENT 0 Y12-20f05.q1k chr08 834 833 133678 134004 F 0 0.00 1418 reject_low 29 ALIGNMENT 115 Y12-20f05.q1k chr06 1036 780 137658 137907 C 257 86.38 1418 reject_low 22 ALIGNMENT 190 Y12-20f05.q1k chr11 726 1036 517107 517423 F 311 89.71 1418 reject_low 6 ALIGNMENT 0 Y12-20f05.q1k chr05 723 62 138544 138543 C 662 0.00 1418 reject_low 12 ALIGNMENT 0 Y12-20f05.q1k chr08 62 762 133607 133606 F 701 0.00 1418 reject_low 29 ALIGNMENT 0 Y12-20f05.q1k chr16 723 62 560800 560799 C 662 0.00 1418 reject_low 3 ALIGNMENT 56 Y12-20f05.q1k chr06 1040 723 143534 143857 C 318 76.73 1418 reject_low 25 ALIGNMENT 66 Y12-20f05.q1k chr04 1036 853 520476 520664 C 184 82.07 1418 reject_low 23 ALIGNMENT 0 Y12-20f05.q1k chr15 734 62 118019 118018 C 673 0.00 1418 reject_low 15 ALIGNMENT 140 Y12-20f05.q1k chr12 724 1040 475985 476312 F 317 84.23 1418 reject_low 18 ALIGNMENT 0 Y12-20f05.q1k chr04 734 62 1096079 1096078 C 673 0.00 1418 reject_low 13 ALIGNMENT 100 Y12-20f05.q1k chr06 929 718 158471 158680 C 212 85.38 1418 reject_low 20 ALIGNMENT 0 Y12-20f05.q1k chr08 62 734 543631 543630 F 673 0.00 1418 reject_low 4 ALIGNMENT 180 Y12-20f05.q1k chr08 724 1036 116426 116744 F 313 88.50 1418 reject_low 10 ALIGNMENT 188 Y12-20f05.q1k chr02 1036 735 259579 259886 C 302 90.07 1418 reject_low 8 ALIGNMENT 635 Y12-20f05.q1k chr04 198 1013 519641 520469 F 816 93.87 1418 accept 0 ALIGNMENT 140 Y12-20f05.q1k chr01 724 1040 160249 160576 F 317 84.23 1418 reject_low 17 ALIGNMENT 0 Y12-20f05.q1k chr04 62 887 519486 519485 F 826 0.00 1418 reject_low 27 ALIGNMENT 699 Y12-20f07.p1k chr10 18 791 84501 85269 F 774 97.93 1382 accept 0 ALIGNMENT 903 Y12-20f07.q1k chr10 1011 37 87985 88960 C 975 98.56 1417 accept 0 ALIGNMENT 973 Y12-20f08.q1k chr10 1114 35 654690 655775 C 1080 97.31 1458 accept 0 ALIGNMENT 780 Y12-20f08.p1k chr10 12 963 650150 651091 F 952 95.80 1400 accept 0 ALIGNMENT 785 Y12-20f09.p1k chr16 928 13 879306 880219 C 916 96.83 1426 accept 0 ALIGNMENT 698 Y12-20f09.q1k chr16 29 831 874767 875562 F 803 97.14 1392 accept 0 ALIGNMENT 0 Y12-20f12.p1k chr16 467 629 56788 56787 F 163 0.00 1405 reject_low 7 ALIGNMENT 0 Y12-20f12.p1k chr06 62 394 143867 143866 F 333 0.00 1405 reject_low 26 ALIGNMENT 0 Y12-20f12.q1k chr03 185 62 78963 78962 C 124 0.00 1425 reject_low 1 ALIGNMENT 92 Y12-20f12.p1k chr07 326 466 876143 876284 F 141 91.49 1405 reject_low 11 ALIGNMENT 0 Y12-20f12.p1k chr16 468 629 560810 560809 F 162 0.00 1405 reject_low 9 ALIGNMENT 87 Y12-20f12.p1k chr13 326 446 184361 184481 F 121 93.39 1405 reject_low 15 ALIGNMENT 0 Y12-20f12.p1k chr12 325 62 476116 476115 C 264 0.00 1405 reject_low 6 ALIGNMENT 102 Y12-20f12.p1k chr16 466 326 850625 850765 C 141 93.62 1405 reject_low 8 ALIGNMENT 106 Y12-20f12.p1k chr03 326 470 82895 83039 F 145 93.79 1405 reject_low 2 ALIGNMENT 0 Y12-20f12.p1k chr04 629 447 645518 645517 C 183 0.00 1405 reject_low 21 ALIGNMENT 0 Y12-20f12.p1k chr01 325 62 165968 165967 C 264 0.00 1405 reject_low 4 ALIGNMENT 0 Y12-20f12.p1k chr03 62 325 82895 82894 F 264 0.00 1405 reject_low 2 ALIGNMENT 0 Y12-20f12.p1k chr14 62 327 519359 519358 F 266 0.00 1405 reject_low 13 ALIGNMENT 87 Y12-20f12.p1k chr16 326 446 844605 844725 F 121 93.39 1405 reject_low 18 ALIGNMENT 0 Y12-20f12.p1k chr16 62 325 844605 844604 F 264 0.00 1405 reject_low 18 ALIGNMENT 0 Y12-20f12.p1k chr13 62 325 184361 184360 F 264 0.00 1405 reject_low 15 ALIGNMENT 435 Y12-20f12.p1k chr03 484 4 83036 83520 C 481 97.71 1405|3,0 accept 0 ALIGNMENT 970 Y12-20f12.q1k chr03 32 1147 78786 79903 F 1116 96.15 1425 accept 0 ALIGNMENT 102 Y12-20f12.p1k chr01 466 326 165827 165967 C 141 93.62 1405 reject_low 4 ALIGNMENT 0 Y12-20f12.p1k chr05 629 467 448981 448980 C 163 0.00 1405 reject_low 5 ALIGNMENT 52 Y12-20f12.p1k chr06 328 456 143730 143856 F 129 83.72 1405 reject_low 25 ALIGNMENT 0 Y12-20f12.p1k chr06 446 629 158663 158662 F 184 0.00 1405 reject_low 22 ALIGNMENT 0 Y12-20f12.p1k chr06 457 629 138229 138228 F 173 0.00 1405 reject_low 24 ALIGNMENT 0 Y12-20f12.p1k chr15 62 325 117899 117898 F 264 0.00 1405 reject_low 16 ALIGNMENT 87 Y12-20f12.p1k chr14 328 467 524925 525064 F 140 90.00 1405 reject_low 12 ALIGNMENT 0 Y12-20f12.p1k chr07 62 325 876143 876142 F 264 0.00 1405 reject_low 11 ALIGNMENT 0 Y12-20f12.p1k chr13 447 629 184481 184480 F 183 0.00 1405 reject_low 15 ALIGNMENT 0 Y12-20f12.p1k chr07 467 629 876284 876283 F 163 0.00 1405 reject_low 11 ALIGNMENT 139 Y12-20f12.p1k chr03 715 479 82470 82699 C 237 90.30 1405|0,3 accept 0 ALIGNMENT 0 Y12-20f12.p1k chr06 62 325 158545 158544 F 264 0.00 1405 reject_low 22 ALIGNMENT 0 Y12-20f12.p1k chr01 629 467 165828 165827 C 163 0.00 1405 reject_low 4 ALIGNMENT 0 Y12-20f12.p1k chr16 447 629 844725 844724 F 183 0.00 1405 reject_low 18 ALIGNMENT 0 Y12-20f12.p1k chr12 629 447 215102 215101 C 183 0.00 1405 reject_low 14 ALIGNMENT 102 Y12-20f12.p1k chr12 466 326 475975 476115 C 141 93.62 1405 reject_low 6 ALIGNMENT 71 Y12-20f12.p1k chr04 446 328 645517 645635 C 119 89.08 1405 reject_low 21 ALIGNMENT 0 Y12-20f12.p1k chr16 629 467 804642 804641 C 163 0.00 1405 reject_low 19 ALIGNMENT 0 Y12-20f12.p1k chr01 325 62 160380 160379 C 264 0.00 1405 reject_low 3 ALIGNMENT 0 Y12-20f12.p1k chr06 62 327 138103 138102 F 266 0.00 1405 reject_low 24 ALIGNMENT 0 Y12-20f12.p1k chr16 446 629 804634 804633 F 184 0.00 1405 reject_low 23 ALIGNMENT 77 Y12-20f12.p1k chr12 328 466 593342 593480 F 139 87.77 1405 reject_low 20 ALIGNMENT 86 Y12-20f12.p1k chr14 328 466 519359 519497 F 139 89.93 1405 reject_low 13 ALIGNMENT 0 Y12-20f12.p1k chr05 325 62 449121 449120 C 264 0.00 1405 reject_low 5 ALIGNMENT 87 Y12-20f12.p1k chr15 326 446 595012 595132 F 121 93.39 1405 reject_low 17 ALIGNMENT 0 Y12-20f12.p1k chr15 447 629 118019 118018 F 183 0.00 1405 reject_low 16 ALIGNMENT 0 Y12-20f12.p1k chr12 467 629 593480 593479 F 163 0.00 1405 reject_low 20 ALIGNMENT 0 Y12-20f12.p1k chr01 629 467 160240 160239 C 163 0.00 1405 reject_low 3 ALIGNMENT 0 Y12-20f12.p1k chr16 62 325 804520 804519 F 264 0.00 1405 reject_low 23 ALIGNMENT 0 Y12-20f12.p1k chr12 62 327 593342 593341 F 266 0.00 1405 reject_low 20 ALIGNMENT 0 Y12-20f12.p1k chr14 62 327 524925 524924 F 266 0.00 1405 reject_low 12 ALIGNMENT 0 Y12-20f12.p1k chr16 62 325 56648 56647 F 264 0.00 1405 reject_low 7 ALIGNMENT 87 Y12-20f12.p1k chr15 326 446 117899 118019 F 121 93.39 1405 reject_low 16 ALIGNMENT 0 Y12-20f12.p1k chr16 62 325 560669 560668 F 264 0.00 1405 reject_low 9 ALIGNMENT 102 Y12-20f12.p1k chr16 326 466 56648 56788 F 141 93.62 1405 reject_low 7 ALIGNMENT 57 Y12-20f12.p1k chr16 326 445 804520 804634 F 120 87.50 1405 reject_low 23 ALIGNMENT 0 Y12-20f12.p1k chr04 327 62 645636 645635 C 266 0.00 1405 reject_low 21 ALIGNMENT 0 Y12-20f12.q1k chr03 859 210 78940 78939 C 650 0.00 1425 reject_low 1 ALIGNMENT 0 Y12-20f12.p1k chr12 629 467 475976 475975 C 163 0.00 1405 reject_low 6 ALIGNMENT 102 Y12-20f12.p1k chr05 466 326 448980 449120 C 141 93.62 1405 reject_low 5 ALIGNMENT 0 Y12-20f12.p1k chr16 325 62 850766 850765 C 264 0.00 1405 reject_low 8 ALIGNMENT 58 Y12-20f12.p1k chr06 326 445 158545 158663 F 120 85.83 1405 reject_low 22 ALIGNMENT 102 Y12-20f12.p1k chr01 466 326 160239 160379 C 141 93.62 1405 reject_low 3 ALIGNMENT 52 Y12-20f12.p1k chr06 328 456 138103 138229 F 129 83.72 1405 reject_low 24 ALIGNMENT 0 Y12-20f12.p1k chr13 629 467 362587 362586 C 163 0.00 1405 reject_low 10 ALIGNMENT 0 Y12-20f12.p1k chr06 457 629 143856 143855 F 173 0.00 1405 reject_low 25 ALIGNMENT 0 Y12-20f12.p1k chr15 62 325 595012 595011 F 264 0.00 1405 reject_low 17 ALIGNMENT 0 Y12-20f12.p1k chr13 325 62 362727 362726 C 264 0.00 1405 reject_low 10 ALIGNMENT 83 Y12-20f12.p1k chr16 466 328 804641 804779 C 139 89.21 1405 reject_low 19 ALIGNMENT 96 Y12-20f12.p1k chr13 466 326 362586 362726 C 141 92.20 1405 reject_low 10 ALIGNMENT 0 Y12-20f12.p1k chr14 468 629 525064 525063 F 162 0.00 1405 reject_low 12 ALIGNMENT 0 Y12-20f12.p1k chr12 325 62 215222 215221 C 264 0.00 1405 reject_low 14 ALIGNMENT 0 Y12-20f12.p1k chr06 62 327 143730 143729 F 266 0.00 1405 reject_low 25 ALIGNMENT 0 Y12-20f12.p1k chr16 629 467 850626 850625 C 163 0.00 1405 reject_low 8 ALIGNMENT 100 Y12-20f12.p1k chr16 326 467 560669 560810 F 142 92.96 1405 reject_low 9 ALIGNMENT 0 Y12-20f12.p1k chr14 467 629 519497 519496 F 163 0.00 1405 reject_low 13 ALIGNMENT 22 Y12-20f12.q1k chr03 209 186 78939 78962 C 24 100.00 1425 reject_low 1 ALIGNMENT 0 Y12-20f12.p1k chr03 481 482 82697 83038 C 0 0.00 1405 accept 0 ALIGNMENT 0 Y12-20f12.p1k chr06 467 629 143937 143936 F 163 0.00 1405 reject_low 26 ALIGNMENT 0 Y12-20f12.p1k chr16 327 62 804780 804779 C 266 0.00 1405 reject_low 19 ALIGNMENT 0 Y12-20f12.p1k chr03 471 629 83039 83038 F 159 0.00 1405 reject_low 2 ALIGNMENT 45 Y12-20f12.p1k chr06 395 466 143867 143937 F 72 91.67 1405 reject_low 26 ALIGNMENT 0 Y12-20f12.p1k chr15 447 629 595132 595131 F 183 0.00 1405 reject_low 17 ALIGNMENT 87 Y12-20f12.p1k chr12 446 326 215101 215221 C 121 93.39 1405 reject_low 14 ALIGNMENT 796 Y12-20f13.p1k chr12 13 868 520354 521207 F 856 98.95 1332 accept 0 ALIGNMENT 0 Y12-20f13.q1k chr04 62 729 1450206 1450205 F 668 0.00 1506 reject_low 1 ALIGNMENT 161 Y12-20f13.q1k chr04 730 985 1450206 1450462 F 256 87.89 1506 reject_low 1 ALIGNMENT 922 Y12-20f13.q1k chr12 1059 31 522946 523971 C 1029 97.47 1506 accept 0 ALIGNMENT 597 Y12-20f14.p1k chr08 14 658 61159 61804 F 645 98.60 1360 accept 0 ALIGNMENT 920 Y12-20f14.q1k chr08 1131 30 64323 65429 C 1102 95.74 1423 accept 0 ALIGNMENT 0 Y12-20f15.q1k chr12 735 810 472582 472581 F 76 0.00 1491 reject_low 4,5,6 ALIGNMENT 0 Y12-20f15.p1k chr12 939 62 485815 485814 C 878 0.00 1298 reject_low 6 ALIGNMENT 0 Y12-20f15.q1k chr12 62 615 472464 472463 F 554 0.00 1491 reject_low 4,5,6 ALIGNMENT 0 Y12-20f15.p1k chr12 939 62 482163 482162 C 878 0.00 1298 reject_low 5 ALIGNMENT 0 Y12-20f15.p1k chr12 74 70 460694 460717 C 5 0.00 1298 reject_bad_break 0 ALIGNMENT 0 Y12-20f15.p1k chr12 939 62 468931 468930 C 878 0.00 1298 reject_low 1 ALIGNMENT 675 Y12-20f15.q1k chr12 33 734 468229 468930 F 702 99.86 1491 reject_low 1 ALIGNMENT 802 Y12-20f15.p1k chr12 1239 75 459480 460693 C 1165 91.33 1298 reject_bad_break 0 ALIGNMENT 119 Y12-20f15.q1k chr12 616 734 482044 482162 F 119 100.00 1491 reject_low 8 ALIGNMENT 0 Y12-20f15.q1k chr12 62 615 489348 489347 F 554 0.00 1491 reject_low 3 ALIGNMENT 867 Y12-20f15.q1k chr12 33 1084 459092 460149 F 1052 96.10 1491 reject_bad_break 0 ALIGNMENT 0 Y12-20f15.q1k chr12 735 810 482162 482161 F 76 0.00 1491 reject_low 8 ALIGNMENT 0 Y12-20f15.q1k chr06 248 62 31730 31729 C 187 0.00 1491 reject_low 7 ALIGNMENT 0 Y12-20f15.q1k chr12 750 810 489481 489480 F 61 0.00 1491 reject_low 3 ALIGNMENT 131 Y12-20f15.p1k chr12 212 75 451419 451556 C 138 98.55 1298 reject_low 2 ALIGNMENT 0 Y12-20f15.p1k chr12 853 213 451420 451419 C 641 0.00 1298 reject_low 2 ALIGNMENT 0 Y12-20f15.p1k chr12 924 62 489482 489481 C 863 0.00 1298 reject_low 3 ALIGNMENT 128 Y12-20f15.q1k chr12 616 749 489348 489481 F 134 98.51 1491 reject_low 3 ALIGNMENT 0 Y12-20f15.q1k chr12 62 615 485696 485695 F 554 0.00 1491 reject_low 9 ALIGNMENT 0 Y12-20f15.p1k chr12 74 70 451557 451580 C 5 0.00 1298 reject_low 2 ALIGNMENT 102 Y12-20f15.p1k chr12 1052 940 485701 485814 C 113 96.46 1298 reject_low 6 ALIGNMENT 119 Y12-20f15.q1k chr12 616 734 472464 472582 F 119 100.00 1491 reject_low 4,5,6 ALIGNMENT 0 Y12-20f15.q1k chr06 810 357 31623 31622 C 454 0.00 1491 reject_low 7 ALIGNMENT 0 Y12-20f15.q1k chr12 62 615 482044 482043 F 554 0.00 1491 reject_low 8 ALIGNMENT 0 Y12-20f15.q1k chr12 735 810 468930 468929 F 76 0.00 1491 reject_low 1 ALIGNMENT 37 Y12-20f15.p1k chr12 69 26 451581 451625 C 44 97.73 1298 reject_low 2 ALIGNMENT 0 Y12-20f15.p1k chr12 939 62 472583 472582 C 878 0.00 1298 reject_low 4 ALIGNMENT 111 Y12-20f15.p1k chr12 1052 925 489353 489481 C 128 95.31 1298 reject_low 3 ALIGNMENT 94 Y12-20f15.q1k chr06 356 249 31622 31729 C 108 98.15 1491 reject_low 7 ALIGNMENT 119 Y12-20f15.q1k chr12 616 734 485696 485814 F 119 100.00 1491 reject_low 9 ALIGNMENT 37 Y12-20f15.p1k chr12 69 26 460718 460762 C 44 97.73 1298 reject_bad_break 0 ALIGNMENT 102 Y12-20f15.p1k chr12 1052 940 472469 472582 C 113 96.46 1298 reject_low 4 ALIGNMENT 102 Y12-20f15.p1k chr12 1052 940 482049 482162 C 113 96.46 1298 reject_low 5 ALIGNMENT 0 Y12-20f15.q1k chr12 735 810 485814 485813 F 76 0.00 1491 reject_low 9 ALIGNMENT 151 Y12-20f15.p1k chr12 1239 940 468617 468930 C 300 85.00 1298 reject_low 1 ALIGNMENT 313 Y12-20f16.q1k chr04 424 1 986601 987029 C 424 94.10 843 reject_low 11 ALIGNMENT 219 Y12-20f16.q1k chr06 240 1 137906 138145 C 240 99.58 843 reject_low 22 ALIGNMENT 250 Y12-20f16.p1k chr01 1099 34 163287 164353 C 1066 75.52 1307 reject_low 14 ALIGNMENT 325 Y12-20f16.q1k chr04 1 424 878394 878822 F 424 95.05 843 reject_low 17 ALIGNMENT 257 Y12-20f16.q1k chr01 1 424 160335 160766 F 424 89.86 843 reject_low 14 ALIGNMENT 325 Y12-20f16.q1k chr12 424 1 656221 656649 C 424 95.05 843 reject_low 18 ALIGNMENT 254 Y12-20f16.p1k chr10 34 1099 474188 475253 F 1066 75.61 1307 reject_low 29 ALIGNMENT 319 Y12-20f16.q1k chr06 424 1 143344 143772 C 424 94.58 843 reject_low 6 ALIGNMENT 0 Y12-20f16.q1k chr06 259 241 137907 137906 C 19 0.00 843 reject_low 22 ALIGNMENT 254 Y12-20f16.p1k chr10 34 1099 479772 480837 F 1066 75.61 1307 reject_low 30 ALIGNMENT 0 Y12-20f16.q1k chr03 239 259 143077 143076 F 21 0.00 843 reject_low 36 ALIGNMENT 257 Y12-20f16.p1k chr13 34 1099 198142 199207 F 1066 75.70 1307 reject_low 27 ALIGNMENT 1006 Y12-20f16.p1k chr06 15 1157 139681 140822 F 1143 97.20 1307 reject_low 6 ALIGNMENT 999 Y12-20f16.p1k chr14 1208 15 565026 566219 C 1194 95.90 1307 reject_low 4 ALIGNMENT 1003 Y12-20f16.p1k chr04 1157 15 516729 517870 C 1143 97.11 1307 reject_low 9 ALIGNMENT 242 Y12-20f16.p1k chr16 1099 34 853674 854739 C 1066 75.23 1307 reject_low 32 ALIGNMENT 1006 Y12-20f16.p1k chr07 15 1157 813225 814366 F 1143 97.20 1307 reject_low 7 ALIGNMENT 254 Y12-20f16.p1k chr07 1099 34 564892 565957 C 1066 75.61 1307 reject_low 28 ALIGNMENT 313 Y12-20f16.q1k chr15 1 424 704159 704587 F 424 94.10 843 ambiguous_trans 1 ALIGNMENT 322 Y12-20f16.q1k chr12 424 1 946625 947053 C 424 94.81 843 reject_low 8 ALIGNMENT 62 Y12-20f16.q1k chr03 81 238 124305 124462 F 158 82.91 843 reject_low 35 ALIGNMENT 0 Y12-20f16.q1k chr01 239 259 166163 166162 F 21 0.00 843 reject_low 33 ALIGNMENT 319 Y12-20f16.q1k chr04 1 424 513779 514207 F 424 94.58 843 reject_low 9 ALIGNMENT 62 Y12-20f16.q1k chr03 81 238 142920 143077 F 158 82.91 843 reject_low 36 ALIGNMENT 313 Y12-20f16.q1k chr07 1 424 561943 562371 F 424 94.10 843 reject_low 2 ALIGNMENT 319 Y12-20f16.q1k chr12 1 424 976348 976776 F 424 94.58 843 reject_low 5 ALIGNMENT 39 Y12-20f16.q1k chr06 171 81 137718 137807 C 91 84.62 843 reject_low 38 ALIGNMENT 214 Y12-20f16.q1k chr14 238 1 519164 519401 C 238 99.16 843 reject_low 23 ALIGNMENT 249 Y12-20f16.p1k chr16 34 1099 846219 847287 F 1066 75.80 1307 reject_low 31 ALIGNMENT 322 Y12-20f16.q1k chr04 424 1 877252 877680 C 424 94.81 843 reject_low 3 ALIGNMENT 0 Y12-20f16.q1k chr03 259 206 149514 149513 C 54 0.00 843 reject_low 37 ALIGNMENT 0 Y12-20f16.q1k chr14 259 239 519165 519164 C 21 0.00 843 reject_low 23 ALIGNMENT 307 Y12-20f16.q1k chr12 424 1 598540 598968 C 424 93.63 843 reject_low 20 ALIGNMENT 325 Y12-20f16.q1k chr15 424 1 975718 976146 C 424 95.05 843 ambiguous_trans 0 ALIGNMENT 0 Y12-20f16.q1k chr06 80 62 137808 137807 C 19 0.00 843 reject_low 38 ALIGNMENT 319 Y12-20f16.q1k chr07 424 1 816888 817316 C 424 94.58 843 reject_low 7 ALIGNMENT 325 Y12-20f16.q1k chr04 1 424 645593 646021 F 424 95.05 843 reject_low 16 ALIGNMENT 316 Y12-20f16.q1k chr14 424 1 524539 524967 C 424 94.34 843 reject_low 19 ALIGNMENT 988 Y12-20f16.p1k chr02 15 1157 31414 32555 F 1143 96.68 1307 reject_low 12 ALIGNMENT 992 Y12-20f16.p1k chr04 15 1210 873589 874784 F 1196 95.65 1307 reject_low 3 ALIGNMENT 316 Y12-20f16.q1k chr14 1 424 562128 562556 F 424 94.34 843 reject_low 4 ALIGNMENT 1000 Y12-20f16.p1k chr12 15 1157 942962 944103 F 1143 97.03 1307 reject_low 8 ALIGNMENT 307 Y12-20f16.q1k chr16 1 424 804737 805165 F 424 93.63 843 reject_low 13 ALIGNMENT 221 Y12-20f16.q1k chr03 1 239 168691 168929 F 239 100.00 843 reject_low 21 ALIGNMENT 1007 Y12-20f16.p1k chr07 1223 15 571723 572931 C 1209 95.78 1307 reject_low 2 ALIGNMENT 0 Y12-20f16.q1k chr06 259 172 137719 137718 C 88 0.00 843 reject_low 38 ALIGNMENT 0 Y12-20f16.q1k chr03 239 259 124462 124461 F 21 0.00 843 reject_low 35 ALIGNMENT 0 Y12-20f16.q1k chr03 259 239 151519 151518 C 21 0.00 843 reject_low 34 ALIGNMENT 0 Y12-20f16.q1k chr03 240 259 168929 168928 F 20 0.00 843 reject_low 21 ALIGNMENT 284 Y12-20f16.q1k chr04 1 317 987240 987556 F 317 99.05 843 reject_low 15 ALIGNMENT 0 Y12-20f16.q1k chr03 80 62 149637 149636 C 19 0.00 843 reject_low 37 ALIGNMENT 251 Y12-20f16.p1k chr04 1099 34 989764 990829 C 1066 75.52 1307 reject_low 15 ALIGNMENT 999 Y12-20f16.p1k chr15 15 1282 972055 973321 F 1268 94.40 1307 ambiguous_trans 0 ALIGNMENT 997 Y12-20f16.p1k chr03 15 1157 86583 87724 F 1143 96.94 1307 reject_low 10 ALIGNMENT 61 Y12-20f16.q1k chr03 238 1 151518 151752 C 238 79.41 843 reject_low 34 ALIGNMENT 47 Y12-20f16.q1k chr03 205 81 149513 149636 C 125 82.40 843 reject_low 37 ALIGNMENT 257 Y12-20f16.p1k chr13 34 1099 185975 187040 F 1066 75.70 1307 reject_low 26 ALIGNMENT 1008 Y12-20f16.p1k chr15 1282 15 706984 708250 C 1268 94.56 1307 ambiguous_trans 1 ALIGNMENT 260 Y12-20f16.p1k chr14 1099 34 99653 100718 C 1066 75.80 1307 reject_low 25 ALIGNMENT 988 Y12-20f16.p1k chr04 15 1157 982938 984079 F 1143 96.68 1307 reject_low 11 ALIGNMENT 319 Y12-20f16.q1k chr03 424 1 90246 90674 C 424 94.58 843 reject_low 10 ALIGNMENT 260 Y12-20f16.p1k chr05 1099 34 446441 447506 C 1066 75.80 1307 reject_low 24 ALIGNMENT 998 Y12-20f16.p1k chr12 1164 15 978774 979923 C 1150 96.78 1307 reject_low 5 ALIGNMENT 254 Y12-20f16.p1k chr16 1099 34 807686 808751 C 1066 75.61 1307 reject_low 13 ALIGNMENT 155 Y12-20f16.q1k chr01 1 238 165923 166163 F 238 91.18 843 reject_low 33 ALIGNMENT 0 Y12-20f16.q1k chr03 62 80 124305 124304 F 19 0.00 843 reject_low 35 ALIGNMENT 0 Y12-20f16.q1k chr03 62 80 142920 142919 F 19 0.00 843 reject_low 36 ALIGNMENT 1050 Y12-20f17.p1k chr13 1281 19 919504 920761 C 1263 95.01 1296 reject_low 2 ALIGNMENT 0 Y12-20f17.q1k chr16 823 765 15501 15497 C 59 0.00 1411 reject_low 1 ALIGNMENT 247 Y12-20f17.q1k chr16 1171 824 15142 15500 C 348 91.67 1411 reject_low 1 ALIGNMENT 997 Y12-20f17.p1k chr16 19 1281 10195 11461 F 1263 93.82 1296 reject_low 1 ALIGNMENT 992 Y12-20f17.q1k chr15 36 1171 1074848 1075994 F 1136 96.57 1411 accept_tel 0 ALIGNMENT 676 Y12-20f17.q1k chr16 764 36 15498 16226 C 729 98.08 1411 reject_low 1 ALIGNMENT 965 Y12-20f17.p1k chr15 1164 19 1079794 1080947 C 1146 95.38 1296 accept_tel 0 ALIGNMENT 1015 Y12-20f18.p1k chr11 20 1184 311789 312961 F 1165 96.57 1262 accept 0 ALIGNMENT 1014 Y12-20f18.q1k chr10 1340 38 200643 201948 C 1303 95.01 1471 ambiguous_trans 1 ALIGNMENT 975 Y12-20f18.q1k chr16 38 1289 438628 439879 F 1252 95.13 1471 ambiguous_trans 2 ALIGNMENT 971 Y12-20f18.q1k chr08 1252 38 88806 90016 C 1215 95.72 1471 ambiguous_trans 3 ALIGNMENT 985 Y12-20f19.q1k chr03 30 1227 271406 272595 F 1198 94.99 1413 accept 0 ALIGNMENT 27 Y12-20f19.q1k chr02 102 144 272533 272575 F 43 90.70 1413 reject_low 2 ALIGNMENT 28 Y12-20f19.q1k chr13 138 92 209870 209916 C 47 93.62 1413 reject_low 3 ALIGNMENT 25 Y12-20f19.q1k chr04 95 137 810726 810768 F 43 93.02 1413 reject_low 4 ALIGNMENT 0 Y12-20f19.q1k chr08 62 94 365362 365361 F 33 0.00 1413 reject_low 6 ALIGNMENT 0 Y12-20f19.q1k chr13 934 139 209871 209870 C 796 0.00 1413 reject_low 3 ALIGNMENT 23 Y12-20f19.q1k chr11 133 94 280028 280067 C 40 92.50 1413 reject_low 5 ALIGNMENT 0 Y12-20f19.q1k chr04 138 934 810768 810767 F 797 0.00 1413 reject_low 4 ALIGNMENT 0 Y12-20f19.q1k chr04 62 94 810726 810725 F 33 0.00 1413 reject_low 4 ALIGNMENT 108 Y12-20f19.p1k chr14 934 655 710163 710443 C 280 80.36 1228 reject_low 1 ALIGNMENT 0 Y12-20f19.q1k chr13 91 62 209917 209916 C 30 0.00 1413 reject_low 3 ALIGNMENT 0 Y12-20f19.q1k chr08 138 934 365404 365403 F 797 0.00 1413 reject_low 6 ALIGNMENT 0 Y12-20f19.q1k chr11 934 134 280029 280028 C 801 0.00 1413 reject_low 5 ALIGNMENT 0 Y12-20f19.q1k chr02 62 101 272533 272532 F 40 0.00 1413 reject_low 2 ALIGNMENT 1064 Y12-20f19.p1k chr03 1228 18 275224 276440 C 1211 97.03 1228 accept 0 ALIGNMENT 0 Y12-20f19.q1k chr11 93 62 280068 280067 C 32 0.00 1413 reject_low 5 ALIGNMENT 22 Y12-20f19.q1k chr08 95 137 365362 365404 F 43 90.70 1413 reject_low 6 ALIGNMENT 0 Y12-20f19.q1k chr02 145 934 272575 272574 F 790 0.00 1413 reject_low 2 ALIGNMENT 0 Y12-20f19.p1k chr14 654 62 710444 710443 C 593 0.00 1228 reject_low 1 ALIGNMENT 1017 Y12-20f20.q1k chr16 1206 38 218071 219251 C 1169 96.49 1408 accept 0 ALIGNMENT 1032 Y12-20f20.p1k chr16 19 1232 215256 216474 F 1214 96.05 1238 accept 0 ALIGNMENT 1008 Y12-20f21.p1k chr15 1210 18 587679 588885 C 1193 95.64 1233 accept 0 ALIGNMENT 941 Y12-20f21.q1k chr15 33 1068 582615 583665 F 1036 98.46 1322 accept 0 ALIGNMENT 899 Y12-20f22.q1k chr12 1049 36 1013151 1014149 C 1014 97.44 1523 accept 0 ALIGNMENT 790 Y12-20f22.p1k chr12 44 1008 1009607 1010562 F 965 95.34 1307 accept 0 ALIGNMENT 993 Y12-20g01.p1k chr04 1233 20 1278218 1279427 C 1214 94.40 1281 accept 0 ALIGNMENT 549 Y12-20g01.q1k chr04 14 611 1273423 1274020 F 598 98.83 1451 accept 0 ALIGNMENT 796 Y12-20g02.q1k chr04 29 899 110359 111231 F 871 97.82 1411 accept 0 ALIGNMENT 941 Y12-20g02.p1k chr04 1134 27 114028 115146 C 1108 96.12 1240 accept 0 ALIGNMENT 879 Y12-20g03.p1k chr14 23 1043 453341 454364 F 1021 95.69 1274 accept 0 ALIGNMENT 625 Y12-20g03.q1k chr14 710 33 457213 457888 C 678 98.53 1518 accept 0 ALIGNMENT 788 Y12-20g04.p1k chr05 15 857 41558 42398 F 843 98.46 1370 accept 0 ALIGNMENT 971 Y12-20g04.q1k chr05 1104 33 44668 45747 C 1072 97.95 1388 accept 0 ALIGNMENT 844 Y12-20g05.q1k chr12 32 1059 566295 567320 F 1028 95.14 1464 accept 0 ALIGNMENT 1016 Y12-20g05.p1k chr12 1257 19 569075 570326 C 1239 94.83 1341 accept 0 ALIGNMENT 886 Y12-20g07.q1k chr10 20 1105 144433 145530 F 1086 95.40 1433 accept 0 ALIGNMENT 1028 Y12-20g07.p1k chr10 1269 24 148500 149751 C 1246 94.62 1347 accept 0 ALIGNMENT 968 Y12-20g08.p1k chr13 1143 19 783152 784287 C 1125 95.73 1305 accept 0 ALIGNMENT 937 Y12-20g08.q1k chr13 28 1157 777652 778795 F 1130 95.22 1414 accept 0 ALIGNMENT 628 Y12-20g09.p1k chr07 680 17 524429 525093 C 664 98.64 1430 accept 0 ALIGNMENT 861 Y12-20g09.q1k chr07 32 1036 520266 521281 F 1005 96.42 1391 accept 0 ALIGNMENT 1002 Y12-20g10.p1k chr02 1256 28 622230 623474 C 1229 95.61 1327 accept 0 ALIGNMENT 896 Y12-20g10.q1k chr02 34 1102 618040 619122 F 1069 95.79 1405 accept 0 ALIGNMENT 905 Y12-20g11.q1k chr02 25 1100 52419 53478 F 1076 96.84 1415 accept 0 ALIGNMENT 572 Y12-20g11.p1k chr02 683 14 57536 58208 C 670 96.42 1450 accept 0 ALIGNMENT 897 Y12-20g12.q1k chr12 32 1025 752444 753435 F 994 97.79 1429 accept 0 ALIGNMENT 736 Y12-20g12.p1k chr12 805 13 756145 756937 C 793 98.23 1503 accept 0 ALIGNMENT 1073 Y12-20g13.q1k chr12 1243 39 837229 838444 C 1205 97.18 1442 accept 0 ALIGNMENT 1036 Y12-20g13.p1k chr12 22 1255 834142 835392 F 1234 96.03 1317 accept 0 ALIGNMENT 0 Y12-20g13.q1k chr01 947 62 31525 31524 C 886 0.00 1442 reject_low 1 ALIGNMENT 26 Y12-20g13.q1k chr01 982 948 31490 31524 C 35 94.29 1442 reject_low 1 ALIGNMENT 306 Y12-20g14.p1k chr05 24 462 305801 306236 F 439 91.57 1481 accept 0 ALIGNMENT 892 Y12-20g14.q1k chr05 1088 29 309212 310276 C 1060 95.94 1393 accept 0 ALIGNMENT 787 Y12-20g15.p1k chr15 872 12 409283 410140 C 861 98.49 1377 accept 0 ALIGNMENT 902 Y12-20g15.q1k chr15 32 1030 404312 405309 F 999 97.70 1430 accept 0 ALIGNMENT 927 Y12-20g16.q1k chr05 1110 32 273930 275006 C 1079 96.39 1436 accept 0 ALIGNMENT 722 Y12-20g16.p1k chr05 16 863 268532 269379 F 848 96.23 1335 accept 0 ALIGNMENT 778 Y12-20g17.q1k chr13 28 1060 187946 188992 F 1033 93.80 1329 ambiguous_trans 11 ALIGNMENT 889 Y12-20g17.q1k chr07 28 1060 539546 540592 F 1033 97.29 1329 ambiguous_trans 3 ALIGNMENT 868 Y12-20g17.q1k chr04 1060 28 987812 988858 C 1033 96.61 1329 ambiguous_trans 5 ALIGNMENT 800 Y12-20g17.q1k chr02 28 977 263355 264306 F 950 96.42 1329 ambiguous_trans 15 ALIGNMENT 803 Y12-20g17.q1k chr15 28 977 598597 599548 F 950 96.53 1329 ambiguous_trans 14 ALIGNMENT 901 Y12-20g17.q1k chr02 28 1060 224818 225864 F 1033 97.68 1329 ambiguous_trans 1 ALIGNMENT 751 Y12-20g17.q1k chr05 977 28 444584 445535 C 950 94.74 1329 ambiguous_trans 24 ALIGNMENT 784 Y12-20g17.q1k chr05 1060 28 493588 494634 C 1033 94.00 1329 ambiguous_trans 9 ALIGNMENT 781 Y12-20g17.q1k chr13 1060 28 373793 374839 C 1033 93.90 1329 ambiguous_trans 10 ALIGNMENT 751 Y12-20g17.q1k chr12 977 28 477166 478117 C 950 94.74 1329 ambiguous_trans 25 ALIGNMENT 775 Y12-20g17.q1k chr16 28 1060 60233 61279 F 1033 93.71 1329 ambiguous_trans 13 ALIGNMENT 868 Y12-20g17.q1k chr04 28 1060 1210472 1211518 F 1033 96.61 1329 ambiguous_trans 6 ALIGNMENT 880 Y12-20g17.q1k chr10 28 1060 481743 482789 F 1033 97.00 1329 ambiguous_trans 4 ALIGNMENT 754 Y12-20g17.q1k chr10 28 1060 476159 477205 F 1033 93.03 1329 ambiguous_trans 17 ALIGNMENT 754 Y12-20g17.q1k chr15 28 985 121484 122444 F 958 94.68 1329 ambiguous_trans 22 ALIGNMENT 862 Y12-20g17.q1k chr14 1060 28 97701 98747 C 1033 96.42 1329 ambiguous_trans 8 ALIGNMENT 751 Y12-20g17.q1k chr13 28 977 200113 201064 F 950 94.74 1329 ambiguous_trans 26 ALIGNMENT 1012 Y12-20g17.p1k chr08 26 1250 131360 132596 F 1225 95.35 1313 accept 0 ALIGNMENT 742 Y12-20g17.q1k chr16 1060 28 805734 806780 C 1033 92.64 1329 ambiguous_trans 20 ALIGNMENT 898 Y12-20g17.q1k chr13 1060 28 358095 359141 C 1033 97.58 1329 ambiguous_trans 2 ALIGNMENT 758 Y12-20g17.q1k chr04 1048 28 646607 647636 C 1021 93.34 1329 ambiguous_trans 18 ALIGNMENT 778 Y12-20g17.q1k chr16 28 1060 848193 849239 F 1033 93.80 1329 ambiguous_trans 12 ALIGNMENT 748 Y12-20g17.q1k chr16 1060 28 851722 852768 C 1033 92.84 1329 ambiguous_trans 19 ALIGNMENT 783 Y12-20g17.q1k chr07 986 28 818574 819535 C 959 95.62 1329 ambiguous_trans 16 ALIGNMENT 868 Y12-20g17.q1k chr12 28 1060 654606 655652 F 1033 96.61 1329 ambiguous_trans 7 ALIGNMENT 757 Y12-20g17.q1k chr04 28 985 1099544 1100504 F 958 94.78 1329 ambiguous_trans 21 ALIGNMENT 754 Y12-20g17.q1k chr07 977 28 563035 563986 C 950 94.84 1329 ambiguous_trans 23 ALIGNMENT 914 Y12-20g19.q1k chr10 1078 30 599475 600538 C 1049 97.33 1365 accept 0 ALIGNMENT 703 Y12-20g19.p1k chr10 15 762 595469 596215 F 748 98.80 1321 accept 0 ALIGNMENT 583 Y12-20g20.p1k chr15 741 12 1065954 1066675 C 730 95.21 1452 ambiguous_tel 2 ALIGNMENT 1010 Y12-20g20.q1k chr12 34 1199 462611 463783 F 1166 96.14 1454 accept 1 ALIGNMENT 1010 Y12-20g20.q1k chr12 34 1199 453474 454646 F 1166 96.14 1454 accept 0 ALIGNMENT 0 Y12-20g21.q1k chr16 790 62 212843 212842 C 729 0.00 1358 reject_low 1 ALIGNMENT 1002 Y12-20g21.p1k chr15 1183 17 328696 329870 C 1167 95.63 1246 accept 0 ALIGNMENT 22 Y12-20g21.q1k chr16 818 791 212815 212842 C 28 100.00 1358 reject_low 1 ALIGNMENT 948 Y12-20g21.q1k chr15 36 1098 325441 326510 F 1063 96.90 1358 accept 0 ALIGNMENT 0 Y12-20g21.q1k chr16 876 819 212816 212815 C 58 0.00 1358 reject_low 1 ALIGNMENT 90 Y12-20g22.p1k chr05 71 172 86604 86705 F 102 97.06 1262 reject_low 1 ALIGNMENT 0 Y12-20g22.q1k chr14 773 522 252248 252247 C 252 0.00 1359 reject_low 14 ALIGNMENT 284 Y12-20g22.q1k chr05 720 39 94698 95377 C 682 80.94 1359 reject_low 1 ALIGNMENT 57 Y12-20g22.q1k chr04 342 160 44441 44623 C 183 77.05 1359 reject_low 13 ALIGNMENT 84 Y12-20g22.p1k chr04 154 70 980966 981050 C 85 100.00 1262 reject_low 10 ALIGNMENT 88 Y12-20g22.p1k chr13 160 71 259150 259239 C 90 100.00 1262 reject_low 9 ALIGNMENT 90 Y12-20g22.p1k chr02 70 160 227077 227167 F 91 100.00 1262 reject_low 7 ALIGNMENT 0 Y12-20g22.q1k chr12 337 773 97115 97114 F 437 0.00 1359 reject_low 12 ALIGNMENT 806 Y12-20g22.q1k chr10 36 944 520771 521676 F 909 96.81 1359 accept 0 ALIGNMENT 57 Y12-20g22.q1k chr14 345 160 252432 252617 C 186 76.88 1359 reject_low 14 ALIGNMENT 0 Y12-20g22.q1k chr12 129 154 96905 96933 F 26 0.00 1359 reject_low 12 ALIGNMENT 21 Y12-20g22.q1k chr14 521 462 252247 252306 C 60 78.33 1359 reject_low 14 ALIGNMENT 93 Y12-20g22.p1k chr12 176 71 167919 168024 C 106 97.17 1262 reject_low 2 ALIGNMENT 0 Y12-20g22.q1k chr04 773 343 44442 44441 C 431 0.00 1359 reject_low 13 ALIGNMENT 0 Y12-20g22.p1k chr04 163 883 437860 437859 F 721 0.00 1262 reject_low 4 ALIGNMENT 90 Y12-20g22.p1k chr04 69 162 437767 437860 F 94 98.94 1262 reject_low 4 ALIGNMENT 0 Y12-20g22.p1k chr13 883 161 259151 259150 C 723 0.00 1262 reject_low 9 ALIGNMENT 0 Y12-20g22.q1k chr04 159 129 44624 44663 C 31 0.00 1359 reject_low 13 ALIGNMENT 0 Y12-20g22.q1k chr14 461 346 252307 252431 C 116 0.00 1359 reject_low 14 ALIGNMENT 0 Y12-20g22.q1k chr14 99 62 252687 252686 C 38 0.00 1359 reject_low 14 ALIGNMENT 0 Y12-20g22.p1k chr05 173 883 86705 86704 F 711 0.00 1262 reject_low 1 ALIGNMENT 88 Y12-20g22.p1k chr07 160 71 561658 561747 C 90 100.00 1262 reject_low 8 ALIGNMENT 0 Y12-20g22.q1k chr04 99 62 44693 44692 C 38 0.00 1359 reject_low 13 ALIGNMENT 0 Y12-20g22.q1k chr14 159 129 252618 252657 C 31 0.00 1359 reject_low 14 ALIGNMENT 89 Y12-20g22.p1k chr01 164 71 182504 182597 C 94 98.94 1262 reject_low 5 ALIGNMENT 0 Y12-20g22.q1k chr10 773 291 381803 381802 C 483 0.00 1359 reject_low 3 ALIGNMENT 0 Y12-20g22.p1k chr01 883 165 182505 182504 C 719 0.00 1262 reject_low 5 ALIGNMENT 1023 Y12-20g22.p1k chr10 1262 23 522822 524055 C 1240 95.65 1262 accept 0 ALIGNMENT 0 Y12-20g22.p1k chr12 883 177 167920 167919 C 707 0.00 1262 reject_low 2 ALIGNMENT 82 Y12-20g22.p1k chr08 160 71 133011 133100 C 90 97.78 1262 reject_low 11 ALIGNMENT 55 Y12-20g22.q1k chr10 290 60 381802 382033 C 231 75.76 1359 reject_low 3 ALIGNMENT 0 Y12-20g22.p1k chr07 883 161 561659 561658 C 723 0.00 1262 reject_low 8 ALIGNMENT 0 Y12-20g22.q1k chr05 773 721 94699 94698 C 53 0.00 1359 reject_low 1 ALIGNMENT 0 Y12-20g22.p1k chr04 883 155 980967 980966 C 729 0.00 1262 reject_low 10 ALIGNMENT 88 Y12-20g22.p1k chr04 69 161 1305618 1305711 F 93 98.92 1262 reject_low 6 ALIGNMENT 0 Y12-20g22.p1k chr08 883 161 133012 133011 C 723 0.00 1262 reject_low 11 ALIGNMENT 0 Y12-20g22.p1k chr04 162 883 1305711 1305710 F 722 0.00 1262 reject_low 6 ALIGNMENT 25 Y12-20g22.q1k chr14 128 100 252658 252686 C 29 100.00 1359 reject_low 14 ALIGNMENT 25 Y12-20g22.q1k chr12 51 128 96829 96904 F 78 80.77 1359 reject_low 12 ALIGNMENT 67 Y12-20g22.q1k chr12 155 336 96934 97115 F 182 79.67 1359 reject_low 12 ALIGNMENT 25 Y12-20g22.q1k chr04 128 100 44664 44692 C 29 100.00 1359 reject_low 13 ALIGNMENT 0 Y12-20g22.p1k chr02 161 883 227167 227166 F 723 0.00 1262 reject_low 7 ALIGNMENT 0 Y12-20g23.q1k chr06 62 658 92364 92363 F 597 0.00 1316 reject_low 12 ALIGNMENT 0 Y12-20g23.q1k chr06 586 910 92590 92589 F 325 0.00 1316 reject_low 14 ALIGNMENT 0 Y12-20g23.q1k chr06 62 490 92406 92405 F 429 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-20g23.q1k chr06 562 910 92596 92595 F 349 0.00 1316 reject_low 7 ALIGNMENT 0 Y12-20g23.q1k chr06 62 700 92436 92435 F 639 0.00 1316 reject_low 11 ALIGNMENT 0 Y12-20g23.q1k chr06 62 598 92364 92363 F 537 0.00 1316 reject_low 3 ALIGNMENT 37 Y12-20g23.q1k chr06 719 807 92364 92452 F 89 82.02 1316 reject_low 10 ALIGNMENT 0 Y12-20g23.q1k chr06 615 910 92589 92588 F 296 0.00 1316 reject_low 13 ALIGNMENT 1050 Y12-20g23.p1k chr12 1239 25 463392 464613 C 1215 96.30 1240 accept_chi 1 ALIGNMENT 0 Y12-20g23.q1k chr06 62 490 92466 92465 F 429 0.00 1316 reject_low 13 ALIGNMENT 36 Y12-20g23.q1k chr06 491 614 92466 92589 F 124 77.42 1316 reject_low 13 ALIGNMENT 48 Y12-20g23.q1k chr06 521 738 92376 92593 F 218 75.23 1316 reject_low 8 ALIGNMENT 0 Y12-20g23.q1k chr06 808 910 92422 92421 F 103 0.00 1316 reject_low 9 ALIGNMENT 74 Y12-20g23.q1k chr06 491 597 92436 92542 F 107 90.65 1316 reject_low 6 ALIGNMENT 0 Y12-20g23.q1k chr06 62 748 92364 92363 F 687 0.00 1316 reject_low 9 ALIGNMENT 1050 Y12-20g23.p1k chr12 1239 25 454255 455476 C 1215 96.30 1240 accept_chi 0 ALIGNMENT 0 Y12-20g23.q1k chr06 62 545 92371 92370 F 484 0.00 1316 reject_low 5 ALIGNMENT 24 Y12-20g23.q1k chr06 551 585 92556 92590 F 35 91.43 1316 reject_low 14 ALIGNMENT 0 Y12-20g23.q1k chr06 62 490 92436 92435 F 429 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-20g23.q1k chr06 808 910 92452 92451 F 103 0.00 1316 reject_low 10 ALIGNMENT 314 Y12-20g23.q1k chr06 599 1193 92364 92984 F 595 87.06 1316 reject_low 3 ALIGNMENT 83 Y12-20g23.q1k chr06 546 764 92371 92589 F 219 80.37 1316 reject_low 5 ALIGNMENT 28 Y12-20g23.q1k chr06 659 824 92364 92529 F 166 73.49 1316 reject_low 12 ALIGNMENT 0 Y12-20g23.q1k chr06 778 910 92512 92511 F 133 0.00 1316 reject_low 11 ALIGNMENT 0 Y12-20g23.q1k chr06 765 910 92589 92588 F 146 0.00 1316 reject_low 5 ALIGNMENT 0 Y12-20g23.q1k chr06 712 910 92596 92595 F 199 0.00 1316 accept_chi 2 ALIGNMENT 508 Y12-20g23.q1k chr06 37 711 91922 92596 F 675 93.04 1316 accept_chi 2 ALIGNMENT 38 Y12-20g23.q1k chr06 749 807 92364 92422 F 59 89.83 1316 reject_low 9 ALIGNMENT 41 Y12-20g23.q1k chr06 701 777 92436 92512 F 77 85.71 1316 reject_low 11 ALIGNMENT 130 Y12-20g23.q1k chr06 491 675 92406 92590 F 185 91.35 1316 reject_low 4 ALIGNMENT 0 Y12-20g23.q1k chr06 825 910 92529 92528 F 86 0.00 1316 reject_low 12 ALIGNMENT 0 Y12-20g23.q1k chr06 62 718 92364 92363 F 657 0.00 1316 reject_low 10 ALIGNMENT 0 Y12-20g23.q1k chr06 62 478 92514 92513 F 417 0.00 1316 reject_low 7 ALIGNMENT 0 Y12-20g23.q1k chr06 62 520 92376 92375 F 459 0.00 1316 reject_low 8 ALIGNMENT 0 Y12-20g23.q1k chr06 598 910 92542 92541 F 313 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-20g23.q1k chr06 676 910 92590 92589 F 235 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-20g23.q1k chr06 739 910 92593 92592 F 172 0.00 1316 reject_low 8 ALIGNMENT 0 Y12-20g23.q1k chr06 62 550 92556 92555 F 489 0.00 1316 reject_low 14 ALIGNMENT 55 Y12-20g23.q1k chr06 479 561 92514 92596 F 83 90.36 1316 reject_low 7 ALIGNMENT 0 Y12-20h01.q1k chrm 100 318 9090 9089 F 219 0.00 1406 reject_low 3 ALIGNMENT 33 Y12-20h01.q1k chrm 53 93 83065 83105 F 41 95.12 1406 reject_low 9 ALIGNMENT 107 Y12-20h01.q1k chrm 323 83 19151 19392 C 241 89.63 1406 accept 0 ALIGNMENT 0 Y12-20h01.q1k chrm 318 86 71213 71212 C 233 0.00 1406 reject_low 12 ALIGNMENT 0 Y12-20h01.q1k chrm 84 318 3101 3100 F 235 0.00 1406 reject_low 14 ALIGNMENT 0 Y12-20h01.q1k chrm 318 98 52320 52319 C 221 0.00 1406 reject_low 7 ALIGNMENT 33 Y12-20h01.q1k chrm 36 83 2090 2136 F 48 91.67 1406 reject_low 4 ALIGNMENT 0 Y12-20h01.q1k chrm 318 93 77 76 C 226 0.00 1406 reject_low 8 ALIGNMENT 39 Y12-20h01.q1k chrm 102 35 57013 57077 C 68 88.24 1406 reject_low 2 ALIGNMENT 33 Y12-20h01.q1k chrm 38 85 80500 80546 F 48 91.67 1406 reject_low 5 ALIGNMENT 0 Y12-20h01.q1k chrm 318 100 9475 9474 C 219 0.00 1406 reject_low 6 ALIGNMENT 30 Y12-20h01.q1k chrm 53 88 11058 11093 F 36 97.22 1406 reject_low 11 ALIGNMENT 34 Y12-20h01.q1k chrm 99 53 9474 9520 C 47 91.49 1406 reject_low 6 ALIGNMENT 26 Y12-20h01.q1k chrm 53 85 76606 76638 F 33 100.00 1406 reject_low 13 ALIGNMENT 41 Y12-20h01.q1k chrm 35 99 9026 9090 F 65 89.23 1406 reject_low 3 ALIGNMENT 31 Y12-20h01.q1k chrm 53 89 11517 11553 F 37 97.30 1406 reject_low 10 ALIGNMENT 0 Y12-20h01.q1k chrm 318 100 31026 31025 C 219 0.00 1406 reject_low 1 ALIGNMENT 0 Y12-20h01.q1k chrm 90 318 11553 11552 F 229 0.00 1406 reject_low 10 ALIGNMENT 0 Y12-20h01.q1k chrm 89 318 11093 11092 F 230 0.00 1406 reject_low 11 ALIGNMENT 24 Y12-20h01.q1k chrm 53 83 3071 3101 F 31 100.00 1406 reject_low 14 ALIGNMENT 0 Y12-20h01.q1k chrm 84 318 2136 2135 F 235 0.00 1406 reject_low 4 ALIGNMENT 26 Y12-20h01.q1k chrm 85 53 71212 71244 C 33 100.00 1406 reject_low 12 ALIGNMENT 0 Y12-20h01.q1k chrm 86 318 80546 80545 F 233 0.00 1406 reject_low 5 ALIGNMENT 35 Y12-20h01.q1k chrm 97 53 52319 52362 C 45 95.56 1406 reject_low 7 ALIGNMENT 0 Y12-20h01.q1k chrm 86 318 76638 76637 F 233 0.00 1406 reject_low 13 ALIGNMENT 59 Y12-20h01.q1k chrm 99 33 31025 31090 C 67 97.01 1406 reject_low 1 ALIGNMENT 0 Y12-20h01.q1k chrm 82 62 19393 19392 C 21 0.00 1406 accept 0 ALIGNMENT 35 Y12-20h01.q1k chrm 92 53 76 115 C 40 97.50 1406 reject_low 8 ALIGNMENT 0 Y12-20h01.q1k chrm 318 103 57014 57013 C 216 0.00 1406 reject_low 2 ALIGNMENT 0 Y12-20h01.q1k chrm 94 318 83105 83104 F 225 0.00 1406 reject_low 9 ALIGNMENT 828 Y12-20h01.p1k chrm 20 1047 15565 16581 F 1028 97.57 1375 accept 0 ALIGNMENT 21 Y12-20h02.q1k chr08 84 52 365360 365392 C 33 90.91 1414 reject_low 8 ALIGNMENT 781 Y12-20h02.q1k chr01 32 879 116461 117309 F 848 98.11 1414 accept 0 ALIGNMENT 25 Y12-20h02.q1k chr04 88 52 834007 834043 C 37 91.89 1414 reject_low 2 ALIGNMENT 22 Y12-20h02.q1k chr15 85 52 427928 427961 C 34 91.18 1414 reject_low 5 ALIGNMENT 0 Y12-20h02.q1k chr15 768 89 428013 428012 C 680 0.00 1414 reject_low 7 ALIGNMENT 554 Y12-20h02.p1k chr01 685 36 121514 122158 C 650 95.85 1508 accept 0 ALIGNMENT 0 Y12-20h02.q1k chr04 768 89 834008 834007 C 680 0.00 1414 reject_low 2 ALIGNMENT 21 Y12-20h02.q1k chr15 88 63 428012 428037 C 26 96.15 1414 reject_low 7 ALIGNMENT 23 Y12-20h02.q1k chr08 88 54 365428 365462 C 35 91.43 1414 reject_low 4 ALIGNMENT 0 Y12-20h02.q1k chr07 86 768 70212 70211 F 683 0.00 1414 reject_low 3 ALIGNMENT 0 Y12-20h02.q1k chr15 768 86 427929 427928 C 683 0.00 1414 reject_low 5 ALIGNMENT 0 Y12-20h02.q1k chr08 768 85 365361 365360 C 684 0.00 1414 reject_low 8 ALIGNMENT 0 Y12-20h02.q1k chr08 768 89 365429 365428 C 680 0.00 1414 reject_low 4 ALIGNMENT 0 Y12-20h02.q1k chr08 768 89 365384 365383 C 680 0.00 1414 reject_low 6 ALIGNMENT 0 Y12-20h02.q1k chr04 89 768 604278 604277 F 680 0.00 1414 reject_low 1 ALIGNMENT 21 Y12-20h02.q1k chr08 88 63 365383 365408 C 26 96.15 1414 reject_low 6 ALIGNMENT 25 Y12-20h02.q1k chr07 52 85 70179 70212 F 34 94.12 1414 reject_low 3 ALIGNMENT 25 Y12-20h02.q1k chr04 52 88 604242 604278 F 37 91.89 1414 reject_low 1 ALIGNMENT 985 Y12-20h03.p1k chr12 1212 21 555632 556835 C 1192 95.72 1272 accept 0 ALIGNMENT 0 Y12-20h03.p1k chr02 482 62 780467 780466 C 421 0.00 1272 reject_low 3 ALIGNMENT 20 Y12-20h03.p1k chr03 358 391 50320 50353 F 34 97.06 1272 reject_low 2 ALIGNMENT 741 Y12-20h03.q1k chr12 29 848 552083 552899 F 820 97.56 1422 accept 0 ALIGNMENT 0 Y12-20h03.p1k chr02 879 522 780429 780428 C 358 0.00 1272 reject_low 3 ALIGNMENT 0 Y12-20h03.p1k chr03 392 879 50353 50352 F 488 0.00 1272 reject_low 2 ALIGNMENT 26 Y12-20h03.p1k chr02 521 483 780428 780466 C 39 97.44 1272 reject_low 3 ALIGNMENT 0 Y12-20h03.p1k chr04 479 62 747540 747539 C 418 0.00 1272 reject_low 1 ALIGNMENT 31 Y12-20h03.p1k chr04 521 480 747498 747539 C 42 100.00 1272 reject_low 1 ALIGNMENT 0 Y12-20h03.p1k chr04 879 522 747499 747498 C 358 0.00 1272 reject_low 1 ALIGNMENT 0 Y12-20h03.p1k chr03 62 357 50320 50319 F 296 0.00 1272 reject_low 2 ALIGNMENT 483 Y12-20h04.p1k chr07 36 644 463276 463883 F 609 94.75 1472 accept 0 ALIGNMENT 719 Y12-20h04.q1k chr07 876 33 466554 467391 C 844 96.09 1456 accept 0 ALIGNMENT 921 Y12-20h05.q1k chr05 1065 34 187964 189001 C 1032 97.48 1453 accept 0 ALIGNMENT 724 Y12-20h05.p1k chr05 4 809 184273 185074 F 806 97.39 1499 accept 0 ALIGNMENT 1010 Y12-20h06.p1k chr11 19 1274 276783 278043 F 1256 94.67 1310 accept 0 ALIGNMENT 961 Y12-20h06.q1k chr11 1144 35 281909 283027 C 1110 96.94 1409 accept 0 ALIGNMENT 875 Y12-20h07.q1k chr04 1051 32 186462 187484 C 1020 96.37 1454 accept 0 ALIGNMENT 830 Y12-20h07.p1k chr04 15 987 182423 183393 F 973 96.81 1349 accept 0 ALIGNMENT 815 Y12-20h11.q1k chr13 27 893 512373 513237 F 867 98.50 1419 accept 0 ALIGNMENT 755 Y12-20h11.p1k chr13 868 2 516357 517222 C 867 96.89 1377 accept 0 ALIGNMENT 522 Y12-20h12.p1k chr03 630 3 178641 179265 C 628 96.18 1309 accept 0 ALIGNMENT 664 Y12-20h12.q1k chr03 28 720 174019 174710 F 693 99.28 1655 accept 0 ALIGNMENT 985 Y12-20h13.p1k chr08 1197 22 433829 435024 C 1176 96.26 1302 accept 0 ALIGNMENT 897 Y12-20h13.q1k chr08 36 1052 430604 431628 F 1017 97.15 1429 accept 0 ALIGNMENT 545 Y12-20h14.p1k chr06 10 636 119141 119769 F 627 96.49 1453 accept 0 ALIGNMENT 697 Y12-20h14.q1k chr06 751 18 123117 123849 C 734 99.05 1485 accept 0 ALIGNMENT 603 Y12-20h15.p1k chr12 635 1 452459 453091 C 635 98.74 1281 accept_chi 1 ALIGNMENT 874 Y12-20h15.q1k chr08 990 28 378946 379909 C 963 97.51 1490 accept_chi 0 ALIGNMENT 87 Y12-20h15.p1k chr12 635 517 490427 490543 C 119 93.28 1281 reject_low 3 ALIGNMENT 603 Y12-20h15.p1k chr12 635 1 461596 462228 C 635 98.74 1281 accept_chi 2 ALIGNMENT 0 Y12-20h15.p1k chr12 516 62 490544 490543 C 455 0.00 1281 reject_low 3 ALIGNMENT 1010 Y12-20h16.q1k chr09 35 1166 76236 77372 F 1132 97.08 1439 accept 0 ALIGNMENT 991 Y12-20h16.p1k chr09 1226 15 80250 81472 C 1212 94.47 1319 accept 0 ALIGNMENT 557 Y12-20h17.q1k chr15 34 739 488412 489116 F 706 94.48 1456 accept 0 ALIGNMENT 1078 Y12-20h19.q1k chr01 1294 41 174546 175808 C 1254 96.33 1455 accept 0 ALIGNMENT 871 Y12-20h19.p1k chr01 22 1180 171534 172707 F 1159 94.31 1258 accept 0 ALIGNMENT 990 Y12-20h20.p1k chr12 1306 15 604167 605434 C 1292 94.04 1306 accept 0 ALIGNMENT 0 Y12-20h20.p1k chr04 162 834 884504 884503 F 673 0.00 1306 reject_low 1 ALIGNMENT 1040 Y12-20h20.q1k chr12 37 1232 600593 601794 F 1196 96.07 1424 accept 0 ALIGNMENT 130 Y12-20h20.p1k chr04 15 161 884356 884504 F 147 96.60 1306 reject_low 1 ALIGNMENT 1013 Y12-20h21.q1k chr06 1213 39 126415 127606 C 1175 96.60 1332 accept 0 ALIGNMENT 1040 Y12-20h21.p1k chr06 22 1217 122337 123543 F 1196 96.40 1253 accept 0 ALIGNMENT 914 Y12-20h22.q1k chr02 30 1082 223128 224175 F 1053 97.06 1381 ambiguous_trans 1 ALIGNMENT 902 Y12-20h22.q1k chr05 1041 30 446215 447225 C 1012 97.53 1381 ambiguous_trans 11 ALIGNMENT 902 Y12-20h22.q1k chr04 1041 30 648316 649326 C 1012 97.53 1381 ambiguous_trans 8 ALIGNMENT 899 Y12-20h22.q1k chr13 30 1041 198423 199433 F 1012 97.43 1381 ambiguous_trans 19 ALIGNMENT 899 Y12-20h22.q1k chr07 1041 30 820215 821225 C 1012 97.43 1381 ambiguous_trans 17 ALIGNMENT 905 Y12-20h22.q1k chr16 1041 30 807460 808470 C 1012 97.63 1381 ambiguous_trans 7 ALIGNMENT 902 Y12-20h22.q1k chr12 1041 30 217904 218914 C 1012 97.53 1381 ambiguous_trans_ua 13 ALIGNMENT 899 Y12-20h22.q1k chr13 1041 30 375519 376529 C 1012 97.43 1381 ambiguous_trans 20 ALIGNMENT 902 Y12-20h22.q1k chr15 30 1041 119794 120804 F 1012 97.53 1381 ambiguous_trans 16 ALIGNMENT 894 Y12-20h22.q1k chr14 30 1032 521252 522253 F 1003 97.51 1381 ambiguous_trans 24 ALIGNMENT 902 Y12-20h22.q1k chr14 1041 30 99427 100437 C 1012 97.53 1381 ambiguous_trans 15 ALIGNMENT 978 Y12-20h22.p1k chr11 1236 112 84684 85811 C 1125 96.80 1236 accept 0 ALIGNMENT 902 Y12-20h22.q1k chr07 1041 30 564666 565676 C 1012 97.53 1381 ambiguous_trans 12 ALIGNMENT 902 Y12-20h22.q1k chr04 30 1041 1097854 1098864 F 1012 97.53 1381 ambiguous_trans 10 ALIGNMENT 899 Y12-20h22.q1k chr10 30 1041 480053 481063 F 1012 97.43 1381 ambiguous_trans 18 ALIGNMENT 903 Y12-20h22.q1k chr05 1082 30 495277 496324 C 1053 96.68 1381 ambiguous_trans 3 ALIGNMENT 903 Y12-20h22.q1k chr13 1082 30 359784 360831 C 1053 96.68 1381 ambiguous_trans 4 ALIGNMENT 882 Y12-20h22.q1k chr16 1082 30 853411 854458 C 1053 96.01 1381 ambiguous_trans 6 ALIGNMENT 902 Y12-20h22.q1k chr04 1041 30 989538 990548 C 1012 97.53 1381 ambiguous_trans 9 ALIGNMENT 895 Y12-20h22.q1k chr16 30 1041 846500 847513 F 1012 97.33 1381 ambiguous_trans 23 ALIGNMENT 898 Y12-20h22.q1k chr01 1041 30 163061 164072 C 1012 97.43 1381 ambiguous_trans 21 ALIGNMENT 908 Y12-20h22.q1k chr04 1082 30 881080 882127 C 1053 96.87 1381 ambiguous_trans 2 ALIGNMENT 902 Y12-20h22.q1k chr13 30 1041 186256 187266 F 1012 97.53 1381 ambiguous_trans 14 ALIGNMENT 896 Y12-20h22.q1k chr16 30 1041 58543 59553 F 1012 97.33 1381 ambiguous_trans 22 ALIGNMENT 900 Y12-20h22.q1k chr10 30 1082 474469 475516 F 1053 96.58 1381 ambiguous_trans 5 ALIGNMENT 0 Y12-20h24.q1k chr15 523 118 1083611 1083720 C 406 0.00 1337 reject_low 19 ALIGNMENT 811 Y12-20h24.q1k chr09 36 1137 7901 8999 F 1102 92.47 1337 ambiguous_tel 0 ALIGNMENT 787 Y12-20h24.q1k chr01 36 1137 918 2013 F 1102 91.65 1337 ambiguous_tel 2 ALIGNMENT 0 Y12-20h24.q1k chr11 869 303 665308 665307 C 567 0.00 1337 reject_low 10 ALIGNMENT 0 Y12-20h24.q1k chr07 62 829 6195 6194 F 768 0.00 1337 reject_low 15 ALIGNMENT 81 Y12-20h24.q1k chr12 939 1121 222701 222880 F 183 82.51 1337 reject_low 17 ALIGNMENT 136 Y12-20h24.q1k chr15 1107 524 1083028 1083610 C 584 77.40 1337 reject_low 19 ALIGNMENT 456 Y12-20h24.q1k chr15 426 1137 11056 11754 F 712 89.89 1337 reject_low 9 ALIGNMENT 149 Y12-20h24.q1k chr11 302 60 665307 665548 C 243 88.48 1337 reject_low 10 ALIGNMENT 41 Y12-20h24.q1k chr16 53 117 7356 7420 F 65 87.69 1337 reject_low 18 ALIGNMENT 38 Y12-20h24.q1k chr15 117 62 1083721 1083776 C 56 89.29 1337 reject_low 19 ALIGNMENT 808 Y12-20h24.q1k chr10 36 1137 7884 8982 F 1102 92.38 1337 ambiguous_tel 1 ALIGNMENT 0 Y12-20h24.q1k chr12 62 938 222701 222700 F 877 0.00 1337 reject_low 17 ALIGNMENT 753 Y12-20h24.q1k chr04 1137 39 1523388 1524488 C 1099 90.90 1337 ambiguous_tel 5 ALIGNMENT 0 Y12-20h24.q1k chr05 910 62 64107 64106 C 849 0.00 1337 reject_low 11 ALIGNMENT 0 Y12-20h24.q1k chr15 62 425 11056 11055 F 364 0.00 1337 reject_low 9 ALIGNMENT 128 Y12-20h24.q1k chr08 893 1238 11890 12231 F 346 81.21 1337 reject_low 12 ALIGNMENT 719 Y12-20h24.q1k chr12 36 1238 12202 13393 F 1203 88.45 1337 ambiguous_tel 4 ALIGNMENT 0 Y12-20h24.q1k chr02 800 62 809535 809534 C 739 0.00 1337 reject_low 13 ALIGNMENT 0 Y12-20h24.q1k chr13 523 62 923415 923414 C 462 0.00 1337 reject_low 14 ALIGNMENT 0 Y12-20h24.q1k chr16 118 523 7421 7530 F 406 0.00 1337 reject_low 18 ALIGNMENT 142 Y12-20h24.q1k chr13 1121 524 922819 923414 C 598 77.59 1337 reject_low 14 ALIGNMENT 716 Y12-20h24.q1k chr11 36 1121 923 2002 F 1086 90.06 1337 ambiguous_tel 8 ALIGNMENT 712 Y12-20h24.q1k chr02 36 1221 6724 7897 F 1186 88.45 1337 ambiguous_tel 7 ALIGNMENT 0 Y12-20h24.q1k chr08 62 892 11890 11889 F 831 0.00 1337 reject_low 12 ALIGNMENT 131 Y12-20h24.q1k chr07 830 1137 6195 6496 F 308 83.12 1337 reject_low 15 ALIGNMENT 129 Y12-20h24.q1k chr05 1238 911 63780 64106 C 328 81.40 1337 reject_low 11 ALIGNMENT 704 Y12-20h24.q1k chr12 1238 36 1062968 1064161 C 1203 87.95 1337 ambiguous_tel 6 ALIGNMENT 135 Y12-20h24.q1k chr16 524 1107 7531 8113 F 584 77.23 1337 reject_low 18 ALIGNMENT 124 Y12-20h24.q1k chr07 1138 801 1080467 1080790 C 338 81.95 1337 reject_low 16 ALIGNMENT 0 Y12-20h24.q1k chr07 800 62 1080791 1080790 C 739 0.00 1337 reject_low 16 ALIGNMENT 722 Y12-20h24.q1k chr14 1238 36 781970 783161 C 1203 88.53 1337 ambiguous_tel 3 ALIGNMENT 127 Y12-20h24.q1k chr02 1238 801 809103 809534 C 438 79.22 1337 reject_low 13 ALIGNMENT 1032 Y12-20i01.p1k chr04 27 1238 46667 47877 F 1212 95.79 1264 accept 0 ALIGNMENT 683 Y12-20i01.q1k chr04 865 1 50283 51140 C 865 95.26 1323 accept 0 ALIGNMENT 0 Y12-20i02.q1k chr02 62 209 643482 643481 F 148 0.00 1394 reject_low 12 ALIGNMENT 0 Y12-20i02.q1k chr10 757 582 197465 197464 C 176 0.00 1394 reject_low 1 ALIGNMENT 0 Y12-20i02.q1k chr14 210 62 561979 561978 C 149 0.00 1394 reject_low 10 ALIGNMENT 507 Y12-20i02.q1k chr16 27 582 442555 443110 F 556 98.38 1394 reject_low 3 ALIGNMENT 0 Y12-20i02.q1k chr06 211 62 144519 144518 C 150 0.00 1394 reject_low 19 ALIGNMENT 758 Y12-20i02.p1k chr07 866 27 292534 293373 C 840 97.86 1266 accept 0 ALIGNMENT 48 Y12-20i02.q1k chr06 405 212 144325 144518 C 194 78.35 1394 reject_low 19 ALIGNMENT 524 Y12-20i02.q1k chr10 581 27 197464 198018 C 555 99.46 1394 reject_low 1 ALIGNMENT 0 Y12-20i02.q1k chr07 583 757 931544 931543 F 175 0.00 1394 reject_low 16 ALIGNMENT 0 Y12-20i02.q1k chr15 757 582 703774 703773 C 176 0.00 1394 reject_low 20 ALIGNMENT 0 Y12-20i02.q1k chr16 582 757 437257 437256 F 176 0.00 1394 reject_low 8 ALIGNMENT 0 Y12-20i02.q1k chr15 293 294 704061 710026 C 0 0.00 1394 reject_low 20 ALIGNMENT 352 Y12-20i02.q1k chr13 581 210 503770 504141 C 372 99.73 1394 reject_low 5 ALIGNMENT 0 Y12-20i02.q1k chr05 582 757 354726 354725 F 176 0.00 1394 reject_low 14 ALIGNMENT 336 Y12-20i02.q1k chr07 581 211 110859 111229 C 371 98.38 1394 reject_low 11 ALIGNMENT 351 Y12-20i02.q1k chr02 211 581 35848 36218 F 371 99.73 1394 reject_low 6 ALIGNMENT 331 Y12-20i02.q1k chr14 211 582 632121 632492 F 372 97.85 1394 reject_low 13 ALIGNMENT 0 Y12-20i02.q1k chr13 582 757 808905 808904 F 176 0.00 1394 reject_low 15 ALIGNMENT 0 Y12-20i02.q1k chr15 210 62 710109 710108 C 149 0.00 1394 reject_low 20 ALIGNMENT 0 Y12-20i02.q1k chr04 757 582 437147 437146 C 176 0.00 1394 reject_low 17 ALIGNMENT 0 Y12-20i02.q1k chr02 582 757 643853 643852 F 176 0.00 1394 reject_low 12 ALIGNMENT 145 Y12-20i02.q1k chr14 581 423 96451 96609 C 159 98.11 1394 reject_low 18 ALIGNMENT 322 Y12-20i02.q1k chr13 211 581 808536 808905 F 371 97.30 1394 reject_low 15 ALIGNMENT 0 Y12-20i02.q1k chr14 583 757 632492 632491 F 175 0.00 1394 reject_low 13 ALIGNMENT 0 Y12-20i02.q1k chr16 583 757 443110 443109 F 175 0.00 1394 reject_low 3 ALIGNMENT 0 Y12-20i02.q1k chr07 62 581 287855 287854 F 520 0.00 1394 accept 0 ALIGNMENT 0 Y12-20i02.q1k chr07 62 210 931174 931173 F 149 0.00 1394 reject_low 16 ALIGNMENT 351 Y12-20i02.q1k chr09 211 581 196650 197020 F 371 99.73 1394 reject_low 7 ALIGNMENT 57 Y12-20i02.q1k chr15 295 211 710025 710108 C 85 94.12 1394|2,0 reject_low 20 ALIGNMENT 0 Y12-20i02.q1k chr14 757 582 96452 96451 C 176 0.00 1394 reject_low 18 ALIGNMENT 0 Y12-20i02.q1k chr13 62 210 808536 808535 F 149 0.00 1394 reject_low 15 ALIGNMENT 0 Y12-20i02.q1k chr02 62 210 35848 35847 F 149 0.00 1394 reject_low 6 ALIGNMENT 0 Y12-20i02.q1k chr10 757 582 203320 203319 C 176 0.00 1394 reject_low 4 ALIGNMENT 0 Y12-20i02.q1k chr09 62 210 196650 196649 F 149 0.00 1394 reject_low 7 ALIGNMENT 334 Y12-20i02.q1k chr02 210 581 643482 643853 F 372 98.12 1394 reject_low 12 ALIGNMENT 509 Y12-20i02.q1k chr08 581 27 85535 86089 C 555 98.56 1394 reject_low 2 ALIGNMENT 0 Y12-20i02.q1k chr05 62 210 354356 354355 F 149 0.00 1394 reject_low 14 ALIGNMENT 0 Y12-20i02.q1k chr07 210 62 111230 111229 C 149 0.00 1394 reject_low 11 ALIGNMENT 0 Y12-20i02.q1k chr07 757 582 110860 110859 C 176 0.00 1394 reject_low 11 ALIGNMENT 352 Y12-20i02.q1k chr10 581 210 203319 203690 C 372 99.73 1394 reject_low 4 ALIGNMENT 0 Y12-20i02.q1k chr04 210 62 437516 437515 C 149 0.00 1394 reject_low 17 ALIGNMENT 0 Y12-20i02.q1k chr06 757 406 144326 144325 C 352 0.00 1394 reject_low 19 ALIGNMENT 340 Y12-20i02.q1k chr16 210 581 436886 437257 F 372 98.66 1394 reject_low 8 ALIGNMENT 0 Y12-20i02.q1k chr08 757 582 91388 91387 C 176 0.00 1394 reject_low 9 ALIGNMENT 0 Y12-20i02.q1k chr02 582 757 36218 36217 F 176 0.00 1394 reject_low 6 ALIGNMENT 0 Y12-20i02.q1k chr14 757 582 561609 561608 C 176 0.00 1394 reject_low 10 ALIGNMENT 0 Y12-20i02.q1k chr08 757 582 85536 85535 C 176 0.00 1394 reject_low 2 ALIGNMENT 0 Y12-20i02.q1k chr08 210 62 91758 91757 C 149 0.00 1394 reject_low 9 ALIGNMENT 0 Y12-20i02.q1k chr10 209 62 203691 203690 C 148 0.00 1394 reject_low 4 ALIGNMENT 327 Y12-20i02.q1k chr05 211 581 354356 354726 F 371 97.57 1394 reject_low 14 ALIGNMENT 305 Y12-20i02.q1k chr07 211 582 931174 931544 F 372 95.70 1394 reject_low 16 ALIGNMENT 0 Y12-20i02.q1k chr09 582 757 197020 197019 F 176 0.00 1394 reject_low 7 ALIGNMENT 261 Y12-20i02.q1k chr15 581 291 703773 704063 C 291 97.94 1394|0,3 reject_low 20 ALIGNMENT 339 Y12-20i02.q1k chr14 581 211 561608 561978 C 371 98.65 1394 reject_low 10 ALIGNMENT 339 Y12-20i02.q1k chr08 581 211 91387 91757 C 371 98.65 1394 reject_low 9 ALIGNMENT 307 Y12-20i02.q1k chr04 581 211 437146 437515 C 371 95.96 1394 reject_low 17 ALIGNMENT 0 Y12-20i02.q1k chr13 209 62 504142 504141 C 148 0.00 1394 reject_low 5 ALIGNMENT 0 Y12-20i02.q1k chr14 422 62 96610 96609 C 361 0.00 1394 reject_low 18 ALIGNMENT 367 Y12-20i02.q1k chr07 582 1100 287855 288369 F 519 92.49 1394 accept 0 ALIGNMENT 0 Y12-20i02.q1k chr14 62 210 632121 632120 F 149 0.00 1394 reject_low 13 ALIGNMENT 0 Y12-20i02.q1k chr13 757 582 503771 503770 C 176 0.00 1394 reject_low 5 ALIGNMENT 0 Y12-20i02.q1k chr16 62 209 436886 436885 F 148 0.00 1394 reject_low 8 ALIGNMENT 1038 Y12-20i03.p1k chr16 25 1289 497855 499133 F 1265 93.52 1293 accept 0 ALIGNMENT 938 Y12-20i03.q1k chr16 1108 33 500213 501315 C 1076 97.12 1370 accept 0 ALIGNMENT 760 Y12-20i04.q1k chr04 31 904 1106231 1107107 F 874 96.91 1420 accept 0 ALIGNMENT 755 Y12-20i04.p1k chr04 858 13 1107948 1108794 C 846 97.40 1370 accept 0 ALIGNMENT 0 Y12-20i05.q1k chr02 672 62 780451 780450 C 611 0.00 1395 reject_low 3 ALIGNMENT 0 Y12-20i05.q1k chr15 62 703 936836 936835 F 642 0.00 1395 reject_low 5 ALIGNMENT 0 Y12-20i05.q1k chr02 851 726 780240 780239 C 126 0.00 1395 reject_low 6 ALIGNMENT 990 Y12-20i05.q1k chr08 34 1165 65885 67037 F 1132 96.55 1395 accept_chi 1 ALIGNMENT 20 Y12-20i05.q1k chr02 725 705 780239 780259 C 21 100.00 1395 reject_low 6 ALIGNMENT 21 Y12-20i05.q1k chr07 309 276 169892 169925 C 34 97.06 1395 reject_low 2 ALIGNMENT 25 Y12-20i05.q1k chr04 709 741 1346522 1346554 F 33 100.00 1395 reject_low 4 ALIGNMENT 29 Y12-20i05.q1k chr02 737 673 780386 780450 C 65 84.62 1395 reject_low 3 ALIGNMENT 0 Y12-20i05.q1k chr02 704 62 780260 780259 C 643 0.00 1395 reject_low 6 ALIGNMENT 24 Y12-20i05.q1k chr15 704 734 936836 936866 F 31 96.77 1395 reject_low 5 ALIGNMENT 0 Y12-20i05.q1k chr02 851 738 780387 780386 C 114 0.00 1395 reject_low 3 ALIGNMENT 0 Y12-20i05.q1k chr04 62 708 1346522 1346521 F 647 0.00 1395 reject_low 4 ALIGNMENT 0 Y12-20i05.q1k chr07 851 310 169893 169892 C 542 0.00 1395 reject_low 2 ALIGNMENT 0 Y12-20i05.q1k chr15 735 851 936866 936865 F 117 0.00 1395 reject_low 5 ALIGNMENT 0 Y12-20i05.q1k chr04 742 851 1346554 1346553 F 110 0.00 1395 reject_low 4 ALIGNMENT 0 Y12-20i05.q1k chr07 275 62 169926 169925 C 214 0.00 1395 reject_low 2 ALIGNMENT 1008 Y12-20i05.p1k chr15 1254 18 194772 196008 C 1237 94.66 1304 accept_chi 0 ALIGNMENT 923 Y12-20i07.p1k chr11 1096 20 653059 654150 C 1077 96.38 1254 accept 0 ALIGNMENT 972 Y12-20i07.q1k chr11 35 1147 650072 651197 F 1113 97.12 1419 accept 0 ALIGNMENT 921 Y12-20i09.q1k chr04 1157 31 98346 99481 C 1127 95.65 1421 accept 0 ALIGNMENT 794 Y12-20i09.p1k chr04 19 941 95247 96159 F 923 97.18 1454 accept 0 ALIGNMENT 883 Y12-20i10.q1k chr14 1010 31 290866 291849 C 980 97.55 1397 accept 0 ALIGNMENT 808 Y12-20i10.p1k chr14 12 915 287991 288896 F 904 97.23 1371 accept 0 ALIGNMENT 872 Y12-20i11.p1k chr12 13 1022 453917 454931 F 1010 96.24 1348 accept 0 ALIGNMENT 872 Y12-20i11.p1k chr12 13 1022 463054 464068 F 1010 96.24 1348 accept 1 ALIGNMENT 785 Y12-20i11.q1k chr12 892 30 457959 458819 C 863 98.03 1426 accept 0 ALIGNMENT 785 Y12-20i11.q1k chr12 892 30 467096 467956 C 863 98.03 1426 accept 1 ALIGNMENT 840 Y12-20i12.q1k chr13 31 1021 694941 695924 F 991 95.76 1442 accept 0 ALIGNMENT 500 Y12-20i12.p1k chr13 581 22 698754 699312 C 560 97.14 1366 accept 0 ALIGNMENT 559 Y12-20i13.p1k chr16 636 3 542006 542639 C 634 97.32 1239 accept 0 ALIGNMENT 902 Y12-20i13.q1k chr16 32 1076 537331 538379 F 1045 97.13 1415 accept 0 ALIGNMENT 735 Y12-20i14.p1k chr10 835 24 701839 702656 C 812 97.66 1334 accept 0 ALIGNMENT 812 Y12-20i14.q1k chr10 3 998 697829 698818 F 996 95.08 1374 accept 0 ALIGNMENT 651 Y12-20i14.p1k chr08 733 24 504480 505190 C 710 97.61 1334 reject_low 1 ALIGNMENT 771 Y12-20i15.p1k chr11 827 14 244745 245559 C 814 99.02 1392 accept 0 ALIGNMENT 0 Y12-20i15.q1k chr01 877 584 116484 116483 C 294 0.00 1355 reject_low 7 ALIGNMENT 0 Y12-20i15.q1k chr04 551 62 604273 604272 C 490 0.00 1355 reject_low 6 ALIGNMENT 0 Y12-20i15.q1k chr06 575 877 202499 202498 F 303 0.00 1355 reject_low 8 ALIGNMENT 0 Y12-20i15.q1k chr07 548 62 70201 70200 C 487 0.00 1355 reject_low 5 ALIGNMENT 0 Y12-20i15.q1k chr15 62 548 428003 428002 F 487 0.00 1355 reject_low 4 ALIGNMENT 0 Y12-20i15.q1k chr04 877 586 1291120 1291119 C 292 0.00 1355 reject_low 10 ALIGNMENT 0 Y12-20i15.q1k chr15 674 877 428028 428027 F 204 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-20i15.q1k chr05 603 877 220000 219999 F 275 0.00 1355 reject_low 3 ALIGNMENT 0 Y12-20i15.q1k chr04 584 877 834044 834043 F 294 0.00 1355 reject_low 9 ALIGNMENT 0 Y12-20i15.q1k chr05 62 548 219947 219946 F 487 0.00 1355 reject_low 3 ALIGNMENT 22 Y12-20i15.q1k chr01 583 547 116483 116519 C 37 89.19 1355 reject_low 7 ALIGNMENT 0 Y12-20i15.q1k chr07 877 588 70163 70162 C 290 0.00 1355 reject_low 5 ALIGNMENT 0 Y12-20i15.q1k chr15 62 551 427907 427906 F 490 0.00 1355 reject_low 1 ALIGNMENT 20 Y12-20i15.q1k chr04 585 561 1291119 1291143 C 25 96.00 1355 reject_low 10 ALIGNMENT 0 Y12-20i15.q1k chr04 560 62 1291144 1291143 C 499 0.00 1355 reject_low 10 ALIGNMENT 30 Y12-20i15.q1k chr07 587 549 70162 70200 C 39 94.87 1355 reject_low 5 ALIGNMENT 23 Y12-20i15.q1k chr04 552 583 834013 834044 F 32 93.75 1355 reject_low 9 ALIGNMENT 23 Y12-20i15.q1k chr06 551 574 202476 202499 F 24 100.00 1355 reject_low 8 ALIGNMENT 0 Y12-20i15.q1k chr06 62 550 202476 202475 F 489 0.00 1355 reject_low 8 ALIGNMENT 32 Y12-20i15.q1k chr05 549 602 219947 220000 F 54 88.89 1355 reject_low 3 ALIGNMENT 0 Y12-20i15.q1k chr07 619 62 70217 70216 C 558 0.00 1355 reject_low 2 ALIGNMENT 28 Y12-20i15.q1k chr04 587 552 604237 604272 C 36 94.44 1355 reject_low 6 ALIGNMENT 0 Y12-20i15.q1k chr07 877 674 70164 70163 C 204 0.00 1355 reject_low 2 ALIGNMENT 21 Y12-20i15.q1k chr07 673 620 70163 70216 C 54 81.48 1355 reject_low 2 ALIGNMENT 0 Y12-20i15.q1k chr04 62 551 834013 834012 F 490 0.00 1355 reject_low 9 ALIGNMENT 0 Y12-20i15.q1k chr15 602 877 428055 428054 F 276 0.00 1355 reject_low 4 ALIGNMENT 886 Y12-20i15.q1k chr11 28 1004 239781 240765 F 977 98.06 1355 accept 0 ALIGNMENT 0 Y12-20i15.q1k chr04 877 588 604238 604237 C 290 0.00 1355 reject_low 6 ALIGNMENT 25 Y12-20i15.q1k chr15 552 673 427907 428028 F 122 76.23 1355 reject_low 1 ALIGNMENT 0 Y12-20i15.q1k chr01 546 62 116520 116519 C 485 0.00 1355 reject_low 7 ALIGNMENT 24 Y12-20i15.q1k chr15 549 601 428003 428055 F 53 84.91 1355 reject_low 4 ALIGNMENT 843 Y12-20i17.q1k chr12 1024 6 462020 463029 C 1019 95.19 1386 accept_chi 2 ALIGNMENT 843 Y12-20i17.q1k chr12 1024 6 452883 453892 C 1019 95.19 1386 accept_chi 1 ALIGNMENT 884 Y12-20i17.p1k chr15 1056 1 881647 882694 C 1056 95.55 1367 accept_chi 0 ALIGNMENT 0 Y12-20i18.q1k chr07 897 654 1080268 1080267 C 244 0.00 1417 reject_low 16 ALIGNMENT 0 Y12-20i18.q1k chr02 126 62 809535 809534 C 65 0.00 1417 reject_low 17 ALIGNMENT 720 Y12-20i18.q1k chr12 32 1047 12868 13891 F 1016 91.63 1417 reject_low 5 ALIGNMENT 725 Y12-20i18.q1k chr02 32 1047 7390 8414 F 1016 91.83 1417 reject_low 4 ALIGNMENT 364 Y12-20i18.q1k chr16 183 988 7873 8688 F 806 83.00 1417 reject_low 15 ALIGNMENT 536 Y12-20i18.q1k chr08 112 1030 11795 12718 F 919 87.92 1417 reject_low 12 ALIGNMENT 364 Y12-20i18.q1k chr15 988 183 1082453 1083268 C 806 83.00 1417 reject_low 14 ALIGNMENT 22 Y12-20i18.q1k chr04 987 863 1522854 1522978 C 125 76.00 1417 reject_low 20 ALIGNMENT 0 Y12-20i18.q1k chr03 897 636 290000 289999 C 262 0.00 1417 reject_low 21 ALIGNMENT 351 Y12-20i18.q1k chr02 653 127 809006 809534 C 527 89.94 1417 reject_low 17 ALIGNMENT 56 Y12-20i18.q1k chr03 635 438 289999 290193 C 198 78.28 1417 reject_low 21 ALIGNMENT 476 Y12-20i18.q1k chr04 642 32 1523198 1523818 C 611 93.45 1417 reject_low 20 ALIGNMENT 0 Y12-20i18.q1k chr05 897 646 63696 63695 C 252 0.00 1417 reject_low 18 ALIGNMENT 707 Y12-20i18.q1k chr10 32 1202 8553 9739 F 1171 88.13 1417 reject_low 1 ALIGNMENT 0 Y12-20i18.q1k chr01 62 245 176653 176652 F 184 0.00 1417 reject_low 19 ALIGNMENT 481 Y12-20i18.q1k chr09 1192 175 433335 434368 C 1018 84.09 1417 reject_low 9 ALIGNMENT 0 Y12-20i18.q1k chr09 174 62 434369 434368 C 113 0.00 1417 reject_low 9 ALIGNMENT 211 Y12-20i18.q1k chr01 246 618 176653 177031 F 373 86.06 1417 reject_low 19 ALIGNMENT 0 Y12-20i18.q1k chr01 619 897 177031 177030 F 279 0.00 1417 reject_low 19 ALIGNMENT 359 Y12-20i18.q1k chr07 653 127 1080267 1080790 C 527 90.51 1417 reject_low 16 ALIGNMENT 0 Y12-20i18.q1k chr07 62 185 6230 6229 F 124 0.00 1417 reject_low 10 ALIGNMENT 0 Y12-20i18.q1k chr15 182 62 1083269 1083268 C 121 0.00 1417 reject_low 14 ALIGNMENT 473 Y12-20i18.q1k chr03 1221 170 307173 308244 C 1052 83.46 1417 reject_low 7 ALIGNMENT 0 Y12-20i18.q1k chr07 126 62 1080791 1080790 C 65 0.00 1417 reject_low 16 ALIGNMENT 700 Y12-20i18.q1k chr14 1073 32 781446 782495 C 1042 90.60 1417 reject_low 6 ALIGNMENT 0 Y12-20i18.q1k chr02 897 654 809007 809006 C 244 0.00 1417 reject_low 17 ALIGNMENT 606 Y12-20i18.q1k chr07 186 1047 6230 7094 F 862 90.95 1417 reject_low 10 ALIGNMENT 559 Y12-20i18.q1k chr15 32 908 11336 12209 F 877 89.28 1417 reject_low 11 ALIGNMENT 0 Y12-20i18.q1k chr03 169 62 308245 308244 C 108 0.00 1417 reject_low 7 ALIGNMENT 317 Y12-20i18.q1k chr05 645 242 63695 64094 C 404 93.56 1417 reject_low 18 ALIGNMENT 0 Y12-20i18.q1k chr16 62 182 7873 7872 F 121 0.00 1417 reject_low 15 ALIGNMENT 564 Y12-20i18.q1k chr11 32 1192 1591 2772 F 1161 84.50 1417 reject_low 8 ALIGNMENT 908 Y12-20i18.p1k chr01 1226 19 4700 5910 C 1208 93.63 1335 accept 0 ALIGNMENT 0 Y12-20i18.q1k chr08 62 111 11795 11794 F 50 0.00 1417 reject_low 12 ALIGNMENT 0 Y12-20i18.q1k chr03 437 62 290194 290193 C 376 0.00 1417 reject_low 21 ALIGNMENT 797 Y12-20i18.q1k chr12 1092 32 1062429 1063491 C 1061 92.93 1417 reject_low 2 ALIGNMENT 0 Y12-20i18.q1k chr05 241 62 64095 64094 C 180 0.00 1417 reject_low 18 ALIGNMENT 356 Y12-20i18.q1k chr13 974 56 922275 923202 C 919 81.18 1417 reject_low 13 ALIGNMENT 694 Y12-20i18.q1k chr09 32 1133 8570 9687 F 1102 89.02 1417 reject_low 3 ALIGNMENT 714 Y12-20i18.q1k chr01 48 1202 1602 2767 F 1155 88.83 1417 accept 0 ALIGNMENT 0 Y12-20i18.q1k chr04 862 643 1522979 1523197 C 220 0.00 1417 reject_low 20 ALIGNMENT 916 Y12-20i19.q1k chr12 1069 30 457208 458257 C 1040 96.83 1411 accept 0 ALIGNMENT 916 Y12-20i19.q1k chr12 1069 30 466345 467394 C 1040 96.83 1411 accept 1 ALIGNMENT 1106 Y12-20i19.p1k chr12 15 1304 454214 455522 F 1290 95.74 1312 accept 0 ALIGNMENT 1106 Y12-20i19.p1k chr12 15 1304 463351 464659 F 1290 95.74 1312 accept 1 ALIGNMENT 988 Y12-20i20.p1k chr05 17 1248 152670 153917 F 1232 94.56 1291 accept 0 ALIGNMENT 965 Y12-20i20.q1k chr05 1207 26 156464 157659 C 1182 96.11 1439 accept 0 ALIGNMENT 27 Y12-20i21.p1k chr07 940 887 270275 270329 C 54 88.89 1068 reject_low 1 ALIGNMENT 26 Y12-20i21.p1k chr07 903 948 270273 270319 F 46 93.48 1068 reject_low 2 ALIGNMENT 920 Y12-20i21.q1k chr12 33 1069 697341 698396 F 1037 97.88 1317 accept 0 ALIGNMENT 26 Y12-20i21.p1k chr04 944 898 226812 226858 C 47 93.62 1068 reject_low 4 ALIGNMENT 0 Y12-20i21.p1k chr07 886 62 270330 270329 C 825 0.00 1068 reject_low 1 ALIGNMENT 0 Y12-20i21.p1k chr04 62 900 226812 226811 F 839 0.00 1068 reject_low 3 ALIGNMENT 0 Y12-20i21.p1k chr04 897 62 226859 226858 C 836 0.00 1068 reject_low 4 ALIGNMENT 561 Y12-20i21.p1k chr12 620 19 701659 702266 C 602 98.67 1068 accept 0 ALIGNMENT 0 Y12-20i21.p1k chr07 62 902 270273 270272 F 841 0.00 1068 reject_low 2 ALIGNMENT 26 Y12-20i21.p1k chr04 901 947 226812 226858 F 47 93.62 1068 reject_low 3 ALIGNMENT 0 Y12-20i24.p1k chr13 801 207 795038 795037 C 595 0.00 1241 reject_low 2 ALIGNMENT 1026 Y12-20i24.q1k chr13 35 1262 405678 406929 F 1228 95.85 1349 accept 0 ALIGNMENT 0 Y12-20i24.p1k chr13 158 62 795085 795084 C 97 0.00 1241 reject_low 2 ALIGNMENT 21 Y12-20i24.p1k chr07 204 159 467704 467749 C 46 95.65 1241 reject_low 1 ALIGNMENT 0 Y12-20i24.p1k chr07 158 62 467750 467749 C 97 0.00 1241 reject_low 1 ALIGNMENT 858 Y12-20i24.p1k chr13 1192 29 408583 409752 C 1164 92.96 1241 accept 0 ALIGNMENT 20 Y12-20i24.p1k chr13 206 159 795037 795084 C 48 93.75 1241 reject_low 2 ALIGNMENT 0 Y12-20i24.p1k chr07 801 205 467705 467704 C 597 0.00 1241 reject_low 1 ALIGNMENT 585 Y12-20j01.p1k chr09 35 755 41952 42664 F 721 94.87 1383 accept 0 ALIGNMENT 669 Y12-20j01.q1k chr09 747 2 46495 47239 C 746 97.32 1315 accept 0 ALIGNMENT 935 Y12-20j02.q1k chr16 27 1172 290690 291845 F 1146 95.11 1371 accept 0 ALIGNMENT 911 Y12-20j02.p1k chr16 1066 19 294276 295314 C 1048 97.33 1295 accept 0 ALIGNMENT 0 Y12-20j03.p1k chr11 543 62 142579 142578 C 482 0.00 1312 reject_low 6 ALIGNMENT 46 Y12-20j03.p1k chr10 348 460 120866 120972 F 113 83.19 1312 reject_low 16 ALIGNMENT 97 Y12-20j03.p1k chr10 802 962 120927 121087 F 161 86.96 1312 reject_low 15 ALIGNMENT 0 Y12-20j03.p1k chr10 62 486 120669 120668 F 425 0.00 1312 reject_low 14 ALIGNMENT 56 Y12-20j03.p1k chr11 691 866 144790 144959 F 176 78.41 1312 reject_low 26 ALIGNMENT 0 Y12-20j03.p1k chr10 462 789 120701 120719 F 328 0.00 1312 reject_low 36 ALIGNMENT 0 Y12-20j03.p1k chr11 822 670 142226 142225 C 153 0.00 1312 reject_low 4,35 ALIGNMENT 61 Y12-20j03.p1k chr11 293 126 142658 142825 C 168 79.17 1312 reject_low 2,3,4,8,12,13,22,27 ALIGNMENT 0 Y12-20j03.p1k chr11 793 822 144942 144941 F 30 0.00 1312 reject_low 29 ALIGNMENT 0 Y12-20j03.p1k chr10 62 558 120669 120668 F 497 0.00 1312 reject_low 25 ALIGNMENT 88 Y12-20j03.p1k chr11 656 427 142409 142623 C 230 82.61 1312 reject_low 2 ALIGNMENT 83 Y12-20j03.p1k chr10 631 800 120669 120838 F 170 85.29 1312 reject_low 15 ALIGNMENT 23 Y12-20j03.p1k chr11 377 343 142538 142572 C 35 88.57 1312 reject_low 8,20,27,34 ALIGNMENT 41 Y12-20j03.p1k chr11 599 544 142223 142278 C 56 91.07 1312 reject_low 27,34 ALIGNMENT 0 Y12-20j03.p1k chr10 462 844 120701 120717 F 383 0.00 1312 reject_low 32 ALIGNMENT 0 Y12-20j03.p1k chr11 520 822 144942 144941 F 303 0.00 1312 reject_low 10 ALIGNMENT 29 Y12-20j03.p1k chr11 411 519 144837 144942 F 109 77.06 1312 reject_low 10 ALIGNMENT 38 Y12-20j03.p1k chr11 593 544 142343 142392 C 50 92.00 1312 reject_low 35 ALIGNMENT 0 Y12-20j03.p1k chr11 670 855 144655 144675 F 186 0.00 1312 reject_low 30 ALIGNMENT 131 Y12-20j03.p1k chr11 941 619 142196 142518 C 323 80.19 1312 reject_low 22 ALIGNMENT 0 Y12-20j03.p1k chr10 62 347 120866 120865 F 286 0.00 1312 reject_low 16 ALIGNMENT 0 Y12-20j03.p1k chr11 125 62 142826 142825 C 64 0.00 1312 reject_low 2,3,4,8,12,13,22,27 ALIGNMENT 0 Y12-20j03.p1k chr11 604 585 142290 142408 C 20 0.00 1312 reject_low 4 ALIGNMENT 46 Y12-20j03.p1k chr11 972 850 142336 142458 C 123 79.67 1312 reject_low 23 ALIGNMENT 631 Y12-20j03.p1k chr10 21 915 120337 121211 F 895 91.40 1312 accept 0 ALIGNMENT 0 Y12-20j03.p1k chr10 62 759 120669 120668 F 698 0.00 1312 reject_low 11 ALIGNMENT 111 Y12-20j03.p1k chr11 584 401 142409 142592 C 184 86.96 1312 reject_low 4 ALIGNMENT 77 Y12-20j03.p1k chr11 684 899 144675 144881 F 216 80.09 1312 reject_low 21 ALIGNMENT 59 Y12-20j03.p1k chr11 534 415 142273 142392 C 120 83.33 1312 reject_low 34 ALIGNMENT 130 Y12-20j03.p1k chr10 461 848 120844 121201 F 388 80.67 1312|1,0 reject_low 18 ALIGNMENT 0 Y12-20j03.p1k chr10 594 822 121147 121146 F 229 0.00 1312 reject_low 16 ALIGNMENT 0 Y12-20j03.p1k chr10 660 733 120776 120843 F 74 0.00 1312 reject_low 25 ALIGNMENT 38 Y12-20j03.p1k chr10 559 659 120669 120775 F 101 80.20 1312 reject_low 25 ALIGNMENT 0 Y12-20j03.p1k chr11 849 665 142459 142586 C 185 0.00 1312 reject_low 23 ALIGNMENT 34 Y12-20j03.p1k chr11 664 619 142344 142389 C 46 91.30 1312 reject_low 37 ALIGNMENT 37 Y12-20j03.p1k chr10 845 905 120718 120778 F 61 86.89 1312 reject_low 32 ALIGNMENT 21 Y12-20j03.p1k chr11 627 669 144612 144654 F 43 83.72 1312 reject_low 21,24,26,28,29,30,31 ALIGNMENT 24 Y12-20j03.p1k chr10 426 461 120665 120700 F 36 88.89 1312 reject_low 1,18,32,33,36 ALIGNMENT 77 Y12-20j03.p1k chr11 906 748 142474 142632 C 159 82.39 1312 reject_low 3 ALIGNMENT 40 Y12-20j03.p1k chr11 856 956 144676 144773 F 101 82.18 1312 reject_low 30 ALIGNMENT 0 Y12-20j03.p1k chr11 618 607 142390 142572 C 12 0.00 1312 reject_low 37 ALIGNMENT 33 Y12-20j03.p1k chr11 534 475 142573 142632 C 60 85.00 1312 reject_low 22,35,37 ALIGNMENT 0 Y12-20j03.p1k chr11 822 513 142182 142181 C 310 0.00 1312 reject_low 20 ALIGNMENT 0 Y12-20j03.p1k chr11 822 378 142410 142409 C 445 0.00 1312 reject_low 5 ALIGNMENT 0 Y12-20j03.p1k chr11 414 378 142279 142537 C 37 0.00 1312 reject_low 20 ALIGNMENT 42 Y12-20j03.p1k chr11 691 792 144844 144942 F 102 81.37 1312 reject_low 29 ALIGNMENT 37 Y12-20j03.p1k chr11 669 605 142225 142289 C 65 86.15 1312 reject_low 4,35 ALIGNMENT 42 Y12-20j03.p1k chr11 802 956 144679 144827 F 155 78.06 1312 reject_low 31 ALIGNMENT 0 Y12-20j03.p1k chr10 62 630 120669 120668 F 569 0.00 1312 reject_low 15 ALIGNMENT 0 Y12-20j03.p1k chr11 822 600 142224 142223 C 223 0.00 1312 reject_low 27,34 ALIGNMENT 0 Y12-20j03.p1k chr11 518 822 144886 144885 F 305 0.00 1312 reject_low 7 ALIGNMENT 20 Y12-20j03.p1k chr11 377 349 142409 142437 C 29 89.66 1312 reject_low 5 ALIGNMENT 0 Y12-20j03.p1k chr11 822 657 142539 142538 C 166 0.00 1312 reject_low 9 ALIGNMENT 33 Y12-20j03.p1k chr11 606 547 142573 142632 C 60 85.00 1312 reject_low 22,37 ALIGNMENT 0 Y12-20j03.p1k chr11 615 62 142636 142635 C 554 0.00 1312 reject_low 23 ALIGNMENT 0 Y12-20j03.p1k chr11 543 535 142279 142272 C 9 0.00 1312 reject_low 34 ALIGNMENT 133 Y12-20j03.p1k chr10 605 972 120778 121154 F 368 79.89 1312 reject_low 14 ALIGNMENT 67 Y12-20j03.p1k chr10 790 874 120720 120804 F 85 92.94 1312|0,9 reject_low 36 ALIGNMENT 68 Y12-20j03.p1k chr11 521 406 142343 142458 C 116 86.21 1312 reject_low 27 ALIGNMENT 0 Y12-20j03.p1k chr11 670 690 144655 144735 F 21 0.00 1312 reject_low 24 ALIGNMENT 43 Y12-20j03.p1k chr10 856 972 120924 121040 F 117 79.49 1312|10,0 reject_low 36 ALIGNMENT 0 Y12-20j03.p1k chr11 604 594 142290 142342 C 11 0.00 1312 reject_low 35 ALIGNMENT 0 Y12-20j03.p1k chr10 605 604 120793 120777 F 0 0.00 1312 reject_low 14 ALIGNMENT 0 Y12-20j03.p1k chr11 405 378 142459 142537 C 28 0.00 1312 reject_low 27 ALIGNMENT 0 Y12-20j03.p1k chr11 670 690 144655 144843 F 21 0.00 1312 reject_low 29 ALIGNMENT 98 Y12-20j03.p1k chr11 972 684 142279 142582 C 289 78.20 1312 reject_low 12 ALIGNMENT 0 Y12-20j03.p1k chr11 342 294 142573 142657 C 49 0.00 1312 reject_low 8,27 ALIGNMENT 44 Y12-20j03.p1k chr11 512 415 142181 142278 C 98 81.63 1312 reject_low 20 ALIGNMENT 31 Y12-20j03.p1k chr10 808 850 120861 120903 F 43 90.70 1312 reject_low 33 ALIGNMENT 98 Y12-20j03.p1k chr11 972 734 142222 142460 C 239 80.33 1312 reject_low 13 ALIGNMENT 0 Y12-20j03.p1k chr11 733 665 142461 142586 C 69 0.00 1312 reject_low 13 ALIGNMENT 0 Y12-20j03.p1k chr11 618 62 142576 142575 C 557 0.00 1312 reject_low 9 ALIGNMENT 0 Y12-20j03.p1k chr10 462 532 120701 120777 F 71 0.00 1312 reject_low 1 ALIGNMENT 0 Y12-20j03.p1k chr11 62 410 144837 144836 F 349 0.00 1312 reject_low 10 ALIGNMENT 0 Y12-20j03.p1k chr11 822 657 142410 142409 C 166 0.00 1312 reject_low 2 ALIGNMENT 0 Y12-20j03.p1k chr11 62 410 144783 144782 F 349 0.00 1312 reject_low 7 ALIGNMENT 55 Y12-20j03.p1k chr11 742 956 144676 144881 F 215 77.21 1312 reject_low 28 ALIGNMENT 34 Y12-20j03.p1k chr11 664 616 142587 142635 C 49 89.80 1312 reject_low 12,13,23 ALIGNMENT 92 Y12-20j03.p1k chr10 403 521 121029 121147 F 119 92.44 1312 reject_low 17 ALIGNMENT 65 Y12-20j03.p1k chr11 691 906 144736 144942 F 216 78.24 1312 reject_low 24 ALIGNMENT 0 Y12-20j03.p1k chr11 670 801 144655 144678 F 132 0.00 1312 reject_low 31 ALIGNMENT 0 Y12-20j03.p1k chr10 522 822 121147 121146 F 301 0.00 1312 reject_low 17 ALIGNMENT 0 Y12-20j03.p1k chr11 683 665 142583 142586 C 19 0.00 1312 reject_low 12 ALIGNMENT 23 Y12-20j03.p1k chr10 760 786 120669 120695 F 27 92.59 1312 reject_low 11 ALIGNMENT 0 Y12-20j03.p1k chr11 822 528 142224 142223 C 295 0.00 1312 reject_low 8 ALIGNMENT 29 Y12-20j03.p1k chr11 656 619 142538 142575 C 38 92.11 1312 reject_low 9 ALIGNMENT 0 Y12-20j03.p1k chr11 822 665 142345 142344 C 158 0.00 1312 reject_low 37 ALIGNMENT 0 Y12-20j03.p1k chr11 62 626 144612 144611 F 565 0.00 1312 reject_low 21,24,26,28,29,30,31 ALIGNMENT 72 Y12-20j03.p1k chr11 527 401 142223 142349 C 127 85.83 1312 reject_low 8 ALIGNMENT 0 Y12-20j03.p1k chr10 462 807 120701 120860 F 346 0.00 1312 reject_low 33 ALIGNMENT 0 Y12-20j03.p1k chr11 670 741 144655 144675 F 72 0.00 1312 reject_low 28 ALIGNMENT 0 Y12-20j03.p1k chr11 543 522 142279 142342 C 22 0.00 1312 reject_low 27 ALIGNMENT 0 Y12-20j03.p1k chr10 794 822 120903 120902 F 29 0.00 1312 reject_low 25 ALIGNMENT 0 Y12-20j03.p1k chr11 400 294 142593 142657 C 107 0.00 1312 reject_low 4 ALIGNMENT 32 Y12-20j03.p1k chr11 584 544 142538 142578 C 41 92.68 1312 reject_low 6 ALIGNMENT 0 Y12-20j03.p1k chr11 670 690 144655 144789 F 21 0.00 1312 reject_low 26 ALIGNMENT 0 Y12-20j03.p1k chr11 546 535 142633 142572 C 12 0.00 1312 reject_low 22,37 ALIGNMENT 0 Y12-20j03.p1k chr11 474 294 142633 142657 C 181 0.00 1312 reject_low 22 ALIGNMENT 0 Y12-20j03.p1k chr11 615 294 142636 142657 C 322 0.00 1312 reject_low 12,13 ALIGNMENT 0 Y12-20j03.p1k chr10 787 822 120695 120694 F 36 0.00 1312 reject_low 11 ALIGNMENT 0 Y12-20j03.p1k chr11 414 378 142393 142537 C 37 0.00 1312 reject_low 34 ALIGNMENT 0 Y12-20j03.p1k chr11 618 607 142519 142572 C 12 0.00 1312 reject_low 22 ALIGNMENT 47 Y12-20j03.p1k chr10 535 593 121089 121147 F 59 93.22 1312 reject_low 16 ALIGNMENT 0 Y12-20j03.p1k chr10 461 534 120973 121088 F 74 0.00 1312 reject_low 16 ALIGNMENT 0 Y12-20j03.p1k chr10 462 461 120701 120844 F 0 0.00 1312 reject_low 18 ALIGNMENT 0 Y12-20j03.p1k chr11 747 294 142633 142657 C 454 0.00 1312 reject_low 3 ALIGNMENT 0 Y12-20j03.p1k chr10 866 865 120796 120933 F 0 0.00 1312 reject_low 36 ALIGNMENT 0 Y12-20j03.p1k chr10 62 351 120999 120998 F 290 0.00 1312 reject_low 17,19 ALIGNMENT 0 Y12-20j03.p1k chr11 426 294 142624 142657 C 133 0.00 1312 reject_low 2 ALIGNMENT 0 Y12-20j03.p1k chr11 474 62 142633 142632 C 413 0.00 1312 reject_low 35,37 ALIGNMENT 0 Y12-20j03.p1k chr10 801 801 120839 120926 F 1 0.00 1312 reject_low 15 ALIGNMENT 497 Y12-20j03.p1k chr10 533 1140 120778 121379 F 608 94.74 1312 reject_low 1 ALIGNMENT 0 Y12-20j03.p1k chr11 822 585 142539 142538 C 238 0.00 1312 reject_low 6 ALIGNMENT 0 Y12-20j03.p1k chr11 670 683 144655 144674 F 14 0.00 1312 reject_low 21 ALIGNMENT 0 Y12-20j03.p1k chr11 348 62 142438 142437 C 287 0.00 1312 reject_low 5 ALIGNMENT 25 Y12-20j03.p1k chr10 352 385 120999 121032 F 34 91.18 1312 reject_low 17,19 ALIGNMENT 0 Y12-20j03.p1k chr10 386 400 121033 121083 F 15 0.00 1312 reject_low 19 ALIGNMENT 0 Y12-20j03.p1k chr10 513 822 121195 121194 F 310 0.00 1312 reject_low 19 ALIGNMENT 859 Y12-20j03.q1k chr10 986 29 123393 124346 C 958 97.49 1553 accept 0 ALIGNMENT 0 Y12-20j03.p1k chr11 543 535 142393 142572 C 9 0.00 1312 reject_low 35 ALIGNMENT 38 Y12-20j03.p1k chr10 734 793 120844 120903 F 60 86.67 1312 reject_low 25 ALIGNMENT 49 Y12-20j03.p1k chr10 487 604 120669 120792 F 118 81.36 1312 reject_low 14 ALIGNMENT 0 Y12-20j03.p1k chr10 62 425 120665 120664 F 364 0.00 1312 reject_low 1,18,32,33,36 ALIGNMENT 0 Y12-20j03.p1k chr10 386 402 121033 121028 F 17 0.00 1312 reject_low 17 ALIGNMENT 0 Y12-20j03.p1k chr11 400 378 142350 142537 C 23 0.00 1312 reject_low 8 ALIGNMENT 55 Y12-20j03.p1k chr10 401 512 121084 121195 F 112 83.04 1312 reject_low 19 ALIGNMENT 0 Y12-20j03.p1k chr11 342 62 142573 142572 C 281 0.00 1312 reject_low 20,34 ALIGNMENT 34 Y12-20j03.p1k chr11 411 517 144783 144886 F 107 78.50 1312 reject_low 7 ALIGNMENT 1026 Y12-20j04.p1k chr15 25 1222 155439 156648 F 1198 95.99 1253 accept 0 ALIGNMENT 303 Y12-20j04.q1k chr15 460 1 160500 160954 C 460 90.65 821 accept 0 ALIGNMENT 714 Y12-20j05.p1k chr14 890 36 664152 664994 C 855 95.44 1408 accept 0 ALIGNMENT 820 Y12-20j05.q1k chr14 31 970 661079 662018 F 940 96.91 1472 accept 0 ALIGNMENT 0 Y12-20j06.p1k chr05 486 259 492348 492347 C 228 0.00 1487 reject_low 5 ALIGNMENT 0 Y12-20j06.p1k chr04 180 122 620042 620041 C 59 0.00 1487 reject_low 2 ALIGNMENT 78 Y12-20j06.p1k chr11 171 261 490595 490686 F 91 95.60 1487 reject_low 1 ALIGNMENT 504 Y12-20j06.p1k chr10 37 775 233712 234436 F 739 92.29 1487 accept 0 ALIGNMENT 0 Y12-20j06.p1k chr11 122 170 490595 490594 F 49 0.00 1487 reject_low 1 ALIGNMENT 0 Y12-20j06.p1k chr15 486 260 340299 340298 C 227 0.00 1487 reject_low 4 ALIGNMENT 835 Y12-20j06.q1k chr10 1008 29 237102 238070 C 980 96.22 1600 accept 0 ALIGNMENT 66 Y12-20j06.p1k chr05 258 186 492347 492419 C 73 97.26 1487 reject_low 5 ALIGNMENT 0 Y12-20j06.p1k chr04 486 260 619964 619963 C 227 0.00 1487 reject_low 2 ALIGNMENT 0 Y12-20j06.p1k chr05 185 122 492420 492419 C 64 0.00 1487 reject_low 5 ALIGNMENT 0 Y12-20j06.p1k chr12 260 486 374429 374428 F 227 0.00 1487 reject_low 3 ALIGNMENT 0 Y12-20j06.p1k chr11 262 486 490686 490685 F 225 0.00 1487 reject_low 1 ALIGNMENT 72 Y12-20j06.p1k chr04 259 181 619963 620041 C 79 97.47 1487 reject_low 2 ALIGNMENT 69 Y12-20j06.p1k chr15 259 184 340298 340373 C 76 97.37 1487 reject_low 4 ALIGNMENT 72 Y12-20j06.p1k chr12 181 259 374351 374429 F 79 97.47 1487 reject_low 3 ALIGNMENT 0 Y12-20j06.p1k chr15 183 122 340374 340373 C 62 0.00 1487 reject_low 4 ALIGNMENT 0 Y12-20j06.p1k chr12 122 180 374351 374350 F 59 0.00 1487 reject_low 3 ALIGNMENT 119 Y12-20j07.q1k chr12 127 245 482044 482162 F 119 100.00 1409 reject_low 5 ALIGNMENT 811 Y12-20j07.q1k chr12 41 1107 459589 460691 F 1067 93.44 1409 accept 0 ALIGNMENT 0 Y12-20j07.q1k chr12 62 126 482044 482043 F 65 0.00 1409 reject_low 5 ALIGNMENT 119 Y12-20j07.q1k chr12 127 245 472464 472582 F 119 100.00 1409 reject_low 4 ALIGNMENT 128 Y12-20j07.q1k chr12 127 260 489348 489481 F 134 98.51 1409 reject_low 3 ALIGNMENT 0 Y12-20j07.q1k chr12 62 126 489348 489347 F 65 0.00 1409 reject_low 3 ALIGNMENT 203 Y12-20j07.q1k chr12 41 245 468726 468930 F 205 100.00 1409 reject_low 2 ALIGNMENT 0 Y12-20j07.q1k chr12 62 126 472464 472463 F 65 0.00 1409 reject_low 4 ALIGNMENT 1045 Y12-20j07.p1k chr12 1245 16 453972 455193 C 1230 95.85 1306 reject_low 1 ALIGNMENT 0 Y12-20j07.q1k chr12 261 832 489481 489480 F 572 0.00 1409 reject_low 3 ALIGNMENT 0 Y12-20j07.q1k chr12 246 832 482162 482161 F 587 0.00 1409 reject_low 5 ALIGNMENT 0 Y12-20j07.q1k chr12 246 832 468930 468929 F 587 0.00 1409 reject_low 2 ALIGNMENT 1048 Y12-20j07.p1k chr12 1303 16 463053 464330 C 1288 94.72 1306 accept 0 ALIGNMENT 0 Y12-20j07.q1k chr12 246 832 472582 472581 F 587 0.00 1409 reject_low 4 ALIGNMENT 119 Y12-20j07.q1k chr12 127 245 485696 485814 F 119 100.00 1409 reject_low 6 ALIGNMENT 0 Y12-20j07.q1k chr12 246 832 485814 485813 F 587 0.00 1409 reject_low 6 ALIGNMENT 0 Y12-20j07.q1k chr12 62 972 451419 451418 F 911 0.00 1409 reject_low 1 ALIGNMENT 82 Y12-20j07.q1k chr12 973 1107 451419 451554 F 135 87.41 1409 reject_low 1 ALIGNMENT 0 Y12-20j07.q1k chr12 62 126 485696 485695 F 65 0.00 1409 reject_low 6 ALIGNMENT 807 Y12-20j08.q1k chr05 1008 29 329445 330418 C 980 95.20 1470 accept 0 ALIGNMENT 503 Y12-20j08.p1k chr05 40 695 324168 324809 F 656 94.97 1426 accept 0 ALIGNMENT 0 Y12-20j09.q1k chr08 580 522 560418 560417 C 59 0.00 1311 reject_low 254 ALIGNMENT 55 Y12-20j09.q1k chr13 529 631 1667 1768 F 103 87.38 1311 reject_low 263 ALIGNMENT 0 Y12-20j09.q1k chr13 522 580 2091 2090 F 59 0.00 1311 reject_low 249 ALIGNMENT 34 Y12-20j09.q1k chr07 413 360 1089006 1089059 C 54 88.89 1311 reject_low 317 ALIGNMENT 112 Y12-20j09.q1k chr10 360 536 1932 2108 F 177 89.83 1311 reject_low 196 ALIGNMENT 545 Y12-20j09.q1k chr10 2 702 1322 2020 F 701 93.30 1311 reject_low 2 ALIGNMENT 0 Y12-20j09.q1k chr10 62 596 1664 1663 F 535 0.00 1311 reject_low 321 ALIGNMENT 0 Y12-20j09.q1k chr07 348 62 1089359 1089358 C 287 0.00 1311 reject_low 82 ALIGNMENT 205 Y12-20j09.q1k chr16 349 695 1519 1863 F 347 88.47 1311 reject_low 86 ALIGNMENT 0 Y12-20j09.q1k chr12 351 62 1069880 1069879 C 290 0.00 1311 reject_low 53 ALIGNMENT 137 Y12-20j09.q1k chr16 421 695 1483 1755 F 275 85.45 1311 reject_low 142 ALIGNMENT 0 Y12-20j09.q1k chr07 528 62 1089395 1089394 C 467 0.00 1311 reject_low 261 ALIGNMENT 0 Y12-20j09.q1k chr12 347 62 1069776 1069775 C 286 0.00 1311 reject_low 67 ALIGNMENT 55 Y12-20j09.q1k chr12 349 463 7614 7728 F 115 85.22 1311 reject_low 268 ALIGNMENT 0 Y12-20j09.q1k chr05 62 528 1470 1469 F 467 0.00 1311 reject_low 56 ALIGNMENT 0 Y12-20j09.q1k chr14 62 348 1862 1861 F 287 0.00 1311 reject_low 270 ALIGNMENT 110 Y12-20j09.q1k chr08 594 349 560417 560661 C 246 84.15 1311 reject_low 194 ALIGNMENT 0 Y12-20j09.q1k chr07 580 414 1089007 1089006 C 167 0.00 1311 reject_low 317 ALIGNMENT 74 Y12-20j09.q1k chr07 521 360 1089006 1089167 C 162 83.95 1311 reject_low 246 ALIGNMENT 43 Y12-20j09.q1k chr12 360 427 7661 7728 F 68 89.71 1311 reject_low 294 ALIGNMENT 0 Y12-20j09.q1k chr12 351 62 1076579 1076578 C 290 0.00 1311 reject_low 43 ALIGNMENT 0 Y12-20j09.q1k chr05 492 62 575318 575317 C 431 0.00 1311 reject_low 37 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1069991 1069990 C 287 0.00 1311 reject_low 22 ALIGNMENT 190 Y12-20j09.q1k chr16 695 349 946114 946458 C 347 87.03 1311 reject_low 92 ALIGNMENT 0 Y12-20j09.q1k chr09 62 359 2021 2020 F 298 0.00 1311 reject_low 290 ALIGNMENT 33 Y12-20j09.q1k chr16 413 348 945962 946027 C 66 84.85 1311 reject_low 312 ALIGNMENT 94 Y12-20j09.q1k chr04 605 352 1530089 1530341 C 254 81.50 1311 reject_low 220 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946207 946206 C 287 0.00 1311 reject_low 209 ALIGNMENT 0 Y12-20j09.q1k chr09 433 580 2093 2092 F 148 0.00 1311 reject_low 290 ALIGNMENT 97 Y12-20j09.q1k chr05 605 352 574918 575170 C 254 81.89 1311 reject_low 49 ALIGNMENT 116 Y12-20j09.q1k chr02 352 724 1705 2075 F 373 78.82 1311 reject_low 154 ALIGNMENT 0 Y12-20j09.q1k chr12 492 464 1070027 1076286 C 29 0.00 1311 reject_low 325 ALIGNMENT 0 Y12-20j09.q1k chr02 62 347 1845 1844 F 286 0.00 1311 reject_low 101 ALIGNMENT 60 Y12-20j09.q1k chr02 529 715 1486 1670 F 187 79.14 1311 reject_low 223 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 2278 2277 F 287 0.00 1311 reject_low 285 ALIGNMENT 124 Y12-20j09.q1k chr02 385 724 1486 1823 F 340 80.59 1311 reject_low 129 ALIGNMENT 0 Y12-20j09.q1k chr16 62 359 1710 1709 F 298 0.00 1311 reject_low 236 ALIGNMENT 0 Y12-20j09.q1k chr14 62 348 1754 1753 F 287 0.00 1311 reject_low 207 ALIGNMENT 239 Y12-20j09.q1k chr10 385 724 1669 2006 F 340 91.76 1311 reject_low 77 ALIGNMENT 0 Y12-20j09.q1k chr08 62 528 1651 1650 F 467 0.00 1311 reject_low 143 ALIGNMENT 62 Y12-20j09.q1k chr10 360 464 2004 2108 F 105 88.57 1311 reject_low 258 ALIGNMENT 0 Y12-20j09.q1k chr14 62 565 1574 1573 F 504 0.00 1311 reject_low 282 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 2217 2216 F 298 0.00 1311 reject_low 228 ALIGNMENT 0 Y12-20j09.q1k chr16 62 348 1663 1662 F 287 0.00 1311 reject_low 208 ALIGNMENT 0 Y12-20j09.p1k chr05 58 94 570969 570981 F 37 0.00 1348 reject_low 18 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946459 946458 C 287 0.00 1311 reject_low 92 ALIGNMENT 187 Y12-20j09.q1k chr12 349 695 1719 2063 F 347 86.74 1311 reject_low 93 ALIGNMENT 86 Y12-20j09.q1k chr16 535 360 945984 946159 C 176 85.23 1311 reject_low 237 ALIGNMENT 0 Y12-20j09.q1k chr08 359 62 560471 560470 C 298 0.00 1311 reject_low 319 ALIGNMENT 135 Y12-20j09.q1k chr10 344 573 1880 2108 F 230 88.70 1311 reject_low 150 ALIGNMENT 0 Y12-20j09.q1k chr16 62 359 1818 1817 F 298 0.00 1311 reject_low 298 ALIGNMENT 0 Y12-20j09.q1k chr08 384 62 560842 560841 C 323 0.00 1311 reject_low 119 ALIGNMENT 0 Y12-20j09.q1k chr09 62 359 1949 1948 F 298 0.00 1311 reject_low 232 ALIGNMENT 0 Y12-20j09.q1k chr16 580 536 945985 945984 C 45 0.00 1311 reject_low 237 ALIGNMENT 151 Y12-20j09.q1k chr05 385 724 1470 1807 F 340 83.24 1311 reject_low 26 ALIGNMENT 55 Y12-20j09.q1k chr13 349 463 1955 2069 F 115 85.22 1311 reject_low 269 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 1738 1737 F 287 0.00 1311 reject_low 166 ALIGNMENT 0 Y12-20j09.q1k chr07 348 62 1089215 1089214 C 287 0.00 1311 reject_low 231 ALIGNMENT 86 Y12-20j09.q1k chr05 724 493 575088 575317 C 232 80.60 1311 reject_low 37 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 1821 1820 F 298 0.00 1311 reject_low 152 ALIGNMENT 0 Y12-20j09.q1k chr12 580 414 1069639 1069638 C 167 0.00 1311 reject_low 73 ALIGNMENT 0 Y12-20j09.q1k chr05 62 384 1470 1469 F 323 0.00 1311 reject_low 26 ALIGNMENT 0 Y12-20j09.q1k chr05 348 62 575246 575245 C 287 0.00 1311 reject_low 32 ALIGNMENT 119 Y12-20j09.q1k chr02 349 695 1738 2082 F 347 80.40 1311 reject_low 166 ALIGNMENT 32 Y12-20j09.q1k chr08 348 403 1866 1921 F 56 87.50 1311 reject_low 313 ALIGNMENT 0 Y12-20j09.p1k chr12 58 94 1065772 1065784 F 37 0.00 1348 accept_tel 0 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 2170 2169 F 287 0.00 1311 reject_low 193 ALIGNMENT 0 Y12-20j09.q1k chr08 492 62 560842 560841 C 431 0.00 1311 reject_low 173 ALIGNMENT 529 Y12-20j09.q1k chr14 5 724 1230 1947 F 720 91.81 1311 reject_low 3 ALIGNMENT 0 Y12-20j09.q1k chr15 351 62 1089543 1089542 C 290 0.00 1311 reject_low 190 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 1794 1793 F 287 0.00 1311 reject_low 155 ALIGNMENT 0 Y12-20j09.q1k chr07 580 378 1089007 1089006 C 203 0.00 1311 reject_low 322 ALIGNMENT 0 Y12-20j09.p1k chr12 58 817 1065771 1065770 F 760 0.00 1348 reject_low 22,23,27,28,31,34,35,36,38,43,45,51,52,53,55,58,63,66,67,69,72,73,75,323,324,325,326,327,328 ALIGNMENT 149 Y12-20j09.q1k chr04 724 385 1530151 1530488 C 340 82.94 1311 reject_low 109 ALIGNMENT 0 Y12-20j09.q1k chr12 62 359 2018 2017 F 298 0.00 1311 reject_low 332 ALIGNMENT 0 Y12-20j09.q1k chr02 428 580 2392 2391 F 153 0.00 1311 reject_low 314 ALIGNMENT 476 Y12-20j09.q1k chr08 5 605 1307 1906 F 601 93.68 1311 reject_low 13 ALIGNMENT 0 Y12-20j09.q1k chr14 536 580 1976 1975 F 45 0.00 1311 reject_low 235 ALIGNMENT 560 Y12-20j09.q1k chr05 5 696 1126 1815 F 692 94.36 1311 reject_low 17 ALIGNMENT 117 Y12-20j09.q1k chr14 352 637 1685 1969 F 286 82.52 1311 reject_low 183 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1614 1613 F 287 0.00 1311 reject_low 29 ALIGNMENT 136 Y12-20j09.q1k chr02 360 657 1677 1972 F 298 84.23 1311 reject_low 158 ALIGNMENT 0 Y12-20j09.q1k chr07 580 559 1089007 1089006 C 22 0.00 1311 reject_low 231 ALIGNMENT 64 Y12-20j09.q1k chr05 521 348 574893 575066 C 174 81.03 1311 reject_low 60 ALIGNMENT 73 Y12-20j09.q1k chr12 529 724 1683 1876 F 196 80.61 1311 reject_low 185 ALIGNMENT 0 Y12-20j09.q1k chr14 62 359 1801 1800 F 298 0.00 1311 reject_low 235 ALIGNMENT 149 Y12-20j09.q1k chr02 344 724 1769 2147 F 381 81.36 1311 reject_low 97 ALIGNMENT 0 Y12-20j09.q1k chr13 62 351 1778 1777 F 290 0.00 1311 reject_low 182 ALIGNMENT 68 Y12-20j09.q1k chr05 360 595 1805 2039 F 236 78.81 1311 reject_low 59 ALIGNMENT 0 Y12-20j09.q1k chr15 348 62 1089618 1089617 C 287 0.00 1311 reject_low 88 ALIGNMENT 137 Y12-20j09.q1k chr15 695 421 1089381 1089653 C 275 85.45 1311 reject_low 141 ALIGNMENT 0 Y12-20j09.q1k chr08 348 62 560770 560769 C 287 0.00 1311 reject_low 117 ALIGNMENT 35 Y12-20j09.q1k chr09 349 390 2046 2087 F 42 97.62 1311 reject_low 303 ALIGNMENT 0 Y12-20j09.q1k chr07 359 62 1089168 1089167 C 298 0.00 1311 reject_low 246 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946279 946278 C 287 0.00 1311 reject_low 178 ALIGNMENT 0 Y12-20j09.q1k chr05 348 62 575138 575137 C 287 0.00 1311 reject_low 48 ALIGNMENT 49 Y12-20j09.q1k chr08 463 349 560439 560553 C 115 83.48 1311 reject_low 286 ALIGNMENT 86 Y12-20j09.q1k chr14 360 535 1801 1976 F 176 85.23 1311 reject_low 235 ALIGNMENT 190 Y12-20j09.q1k chr09 421 702 1686 1965 F 282 91.13 1311 reject_low 89 ALIGNMENT 0 Y12-20j09.q1k chr12 536 580 7728 7727 F 45 0.00 1311 reject_low 233 ALIGNMENT 52 Y12-20j09.q1k chr12 463 349 1076287 1076401 C 115 84.35 1311|3,0 reject_low 323,325 ALIGNMENT 0 Y12-20j09.q1k chr05 62 359 1877 1876 F 298 0.00 1311 reject_low 68 ALIGNMENT 529 Y12-20j09.q1k chr16 5 724 1139 1856 F 720 91.81 1311 reject_low 5 ALIGNMENT 0 Y12-20j09.q1k chr05 580 536 574916 574915 C 45 0.00 1311 reject_low 54 ALIGNMENT 0 Y12-20j09.q1k chr12 580 450 1069639 1069638 C 131 0.00 1311 reject_low 69 ALIGNMENT 130 Y12-20j09.q1k chr12 457 657 1683 1881 F 201 90.55 1311 reject_low 160 ALIGNMENT 137 Y12-20j09.q1k chr07 695 421 1089122 1089394 C 275 85.45 1311 reject_low 138 ALIGNMENT 0 Y12-20j09.q1k chr09 391 580 2087 2086 F 190 0.00 1311 reject_low 303 ALIGNMENT 44 Y12-20j09.q1k chr04 657 566 1530398 1530488 C 92 84.78 1311 reject_low 278 ALIGNMENT 118 Y12-20j09.q1k chr09 349 580 1866 2096 F 232 86.21 1311 reject_low 188 ALIGNMENT 0 Y12-20j09.q1k chr02 62 343 1769 1768 F 282 0.00 1311 reject_low 97 ALIGNMENT 86 Y12-20j09.q1k chr15 724 493 1089424 1089653 C 232 80.60 1311 reject_low 176 ALIGNMENT 224 Y12-20j09.q1k chr05 349 724 1506 1879 F 376 88.30 1311 reject_low 19 ALIGNMENT 0 Y12-20j09.q1k chr05 359 62 574983 574982 C 298 0.00 1311 reject_low 70 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1076402 1076401 C 287 0.00 1311 reject_low 323,325 ALIGNMENT 901 Y12-20j09.p1k chr07 17 1230 1084962 1086206 F 1214 92.59 1348 reject_low 4 ALIGNMENT 0 Y12-20j09.q1k chr14 62 348 1646 1645 F 287 0.00 1311 reject_low 135 ALIGNMENT 63 Y12-20j09.q1k chr08 521 349 560417 560589 C 173 80.92 1311 reject_low 254 ALIGNMENT 31 Y12-20j09.q1k chr08 413 360 560417 560470 C 54 87.04 1311 reject_low 319 ALIGNMENT 88 Y12-20j09.q1k chr09 349 468 1974 2093 F 120 93.33 1311 reject_low 225 ALIGNMENT 190 Y12-20j09.q1k chr10 421 702 1669 1948 F 282 91.13 1311 reject_low 90 ALIGNMENT 819 Y12-20j09.p1k chr13 1030 27 3887 4926 C 1004 94.82 1348 reject_low 15 ALIGNMENT 0 Y12-20j09.q1k chr07 456 62 1089395 1089394 C 395 0.00 1311 reject_low 121 ALIGNMENT 55 Y12-20j09.q1k chr08 631 529 560740 560841 C 103 87.38 1311 reject_low 262 ALIGNMENT 0 Y12-20j09.q1k chr08 62 456 1651 1650 F 395 0.00 1311 reject_low 149 ALIGNMENT 0 Y12-20j09.q1k chr08 62 492 1651 1650 F 431 0.00 1311 reject_low 96 ALIGNMENT 120 Y12-20j09.q1k chr12 352 637 1902 2186 F 286 82.87 1311 reject_low 179 ALIGNMENT 0 Y12-20j09.q1k chr14 522 580 1998 1997 F 59 0.00 1311 reject_low 250 ALIGNMENT 0 Y12-20j09.q1k chr02 62 528 1486 1485 F 467 0.00 1311 reject_low 223 ALIGNMENT 0 Y12-20j09.q1k chr12 528 522 1070027 1076264 C 7 0.00 1311 reject_low 327 ALIGNMENT 0 Y12-20j09.q1k chr07 492 62 1089395 1089394 C 431 0.00 1311 reject_low 172 ALIGNMENT 0 Y12-20j09.q1k chr12 528 62 1076690 1076689 C 467 0.00 1311 reject_low 63 ALIGNMENT 0 Y12-20j09.q1k chr07 351 62 1089248 1089247 C 290 0.00 1311 reject_low 224 ALIGNMENT 0 Y12-20j09.q1k chr09 62 456 1686 1685 F 395 0.00 1311 reject_low 113 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 1522 1521 F 287 0.00 1311 reject_low 78 ALIGNMENT 44 Y12-20j09.q1k chr07 657 566 1089304 1089394 C 92 84.78 1311 reject_low 279 ALIGNMENT 0 Y12-20j09.q1k chr13 62 348 1703 1702 F 287 0.00 1311 reject_low 84 ALIGNMENT 114 Y12-20j09.q1k chr15 637 352 1089258 1089542 C 286 82.17 1311 reject_low 190 ALIGNMENT 0 Y12-20j09.q1k chr09 62 565 1686 1685 F 504 0.00 1311 reject_low 291 ALIGNMENT 0 Y12-20j09.q1k chr12 580 486 1069639 1069638 C 95 0.00 1311 reject_low 67 ALIGNMENT 120 Y12-20j09.q1k chr04 724 457 1530223 1530488 C 268 83.21 1311 reject_low 120 ALIGNMENT 61 Y12-20j09.q1k chr06 421 637 893 1108 F 217 78.34 1311 reject_low 257 ALIGNMENT 0 Y12-20j09.q1k chr12 351 62 1076543 1076542 C 290 0.00 1311 reject_low 52 ALIGNMENT 0 Y12-20j09.q1k chr12 62 351 7473 7472 F 290 0.00 1311 reject_low 212 ALIGNMENT 529 Y12-20j09.q1k chr04 724 5 1530115 1530832 C 720 91.81 1311 reject_low 6 ALIGNMENT 0 Y12-20j09.q1k chr16 62 348 1555 1554 F 287 0.00 1311 reject_low 136 ALIGNMENT 0 Y12-20j09.q1k chr16 62 348 1519 1518 F 287 0.00 1311 reject_low 86 ALIGNMENT 0 Y12-20j09.q1k chr15 528 62 1089654 1089653 C 467 0.00 1311 reject_low 265 ALIGNMENT 0 Y12-20j09.q1k chr13 62 384 1667 1666 F 323 0.00 1311 reject_low 104 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946351 946350 C 287 0.00 1311 reject_low 91 ALIGNMENT 0 Y12-20j09.q1k chr07 351 62 1089284 1089283 C 290 0.00 1311 reject_low 192 ALIGNMENT 0 Y12-20j09.q1k chr12 62 456 1683 1682 F 395 0.00 1311 reject_low 160 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 2079 2078 F 287 0.00 1311 reject_low 329,331 ALIGNMENT 0 Y12-20j09.q1k chr08 62 348 1723 1722 F 287 0.00 1311 reject_low 242 ALIGNMENT 140 Y12-20j09.q1k chr09 349 616 1830 2096 F 268 86.57 1311 reject_low 159 ALIGNMENT 47 Y12-20j09.q1k chr05 566 702 1470 1605 F 137 79.56 1311 reject_low 57 ALIGNMENT 0 Y12-20j09.q1k chr16 522 580 1907 1906 F 59 0.00 1311 reject_low 251 ALIGNMENT 63 Y12-20j09.q1k chr02 349 521 2242 2414 F 173 80.92 1311 reject_low 253 ALIGNMENT 146 Y12-20j09.q1k chr02 349 657 1918 2224 F 309 84.79 1311 reject_low 153 ALIGNMENT 147 Y12-20j09.q1k chr02 349 695 1630 1974 F 347 83.00 1311 reject_low 127 ALIGNMENT 0 Y12-20j09.q1k chr15 492 62 1089654 1089653 C 431 0.00 1311 reject_low 176 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1069955 1069954 C 287 0.00 1311 reject_low 35 ALIGNMENT 43 Y12-20j09.q1k chr12 360 427 2126 2193 F 68 89.71 1311|0,3 reject_low 330,334 ALIGNMENT 43 Y12-20j09.q1k chr16 427 360 945984 946051 C 68 89.71 1311 reject_low 299 ALIGNMENT 97 Y12-20j09.q1k chr14 352 605 1721 1973 F 254 81.89 1311 reject_low 214 ALIGNMENT 189 Y12-20j09.q1k chr05 349 695 1578 1922 F 347 87.03 1311 reject_low 24 ALIGNMENT 0 Y12-20j09.q1k chr12 62 359 7553 7552 F 298 0.00 1311 reject_low 233 ALIGNMENT 137 Y12-20j09.q1k chr12 695 421 1069754 1070026 C 275 85.45 1311|0,4 reject_low 324 ALIGNMENT 0 Y12-20j09.q1k chr04 565 62 1530489 1530488 C 504 0.00 1311 reject_low 278 ALIGNMENT 33 Y12-20j09.q1k chr04 413 348 1530064 1530129 C 66 84.85 1311 reject_low 305 ALIGNMENT 128 Y12-20j09.q1k chr02 349 637 2098 2385 F 289 83.74 1311 reject_low 170 ALIGNMENT 0 Y12-20j09.q1k chr10 429 580 2108 2107 F 152 0.00 1311 reject_low 267 ALIGNMENT 127 Y12-20j09.q1k chr08 657 421 560607 560841 C 237 86.92 1311 reject_low 168 ALIGNMENT 0 Y12-20j09.q1k chr16 347 62 946136 946135 C 286 0.00 1311 reject_low 252 ALIGNMENT 100 Y12-20j09.q1k chr08 529 724 1651 1844 F 196 85.20 1311 reject_low 143 ALIGNMENT 60 Y12-20j09.q1k chr06 349 595 1001 1246 F 247 77.33 1311 reject_low 259 ALIGNMENT 115 Y12-20j09.q1k chr09 344 539 1897 2092 F 196 88.27 1311 reject_low 162 ALIGNMENT 149 Y12-20j09.q1k chr15 724 385 1089316 1089653 C 340 82.94 1311 reject_low 110 ALIGNMENT 529 Y12-20j09.q1k chr05 724 5 574944 575661 C 720 91.81 1311 reject_low 18 ALIGNMENT 31 Y12-20j09.q1k chr02 360 413 2361 2414 F 54 87.04 1311 reject_low 318 ALIGNMENT 0 Y12-20j09.q1k chr04 580 464 1530087 1530086 C 117 0.00 1311 reject_low 275 ALIGNMENT 0 Y12-20j09.q1k chr12 62 359 7661 7660 F 298 0.00 1311 reject_low 294 ALIGNMENT 152 Y12-20j09.q1k chr10 349 637 1813 2100 F 289 86.51 1311 reject_low 151 ALIGNMENT 55 Y12-20j09.q1k chr08 566 724 1651 1808 F 159 79.25 1311 reject_low 210 ALIGNMENT 86 Y12-20j09.q1k chr04 724 493 1530259 1530488 C 232 80.60 1311 reject_low 171 ALIGNMENT 64 Y12-20j09.q1k chr13 348 521 1918 2091 F 174 81.03 1311 reject_low 249 ALIGNMENT 155 Y12-20j09.q1k chr07 657 349 1089016 1089322 C 309 85.76 1311 reject_low 132 ALIGNMENT 0 Y12-20j09.q1k chr15 456 62 1089654 1089653 C 395 0.00 1311 reject_low 124 ALIGNMENT 0 Y12-20j09.q1k chr12 359 62 1069800 1069799 C 298 0.00 1311 reject_low 58 ALIGNMENT 202 Y12-20j09.q1k chr04 695 349 1530108 1530452 C 347 88.18 1311 reject_low 87 ALIGNMENT 0 Y12-20j09.q1k chr08 464 580 1909 1908 F 117 0.00 1311 reject_low 301 ALIGNMENT 55 Y12-20j09.q1k chr16 349 463 1771 1885 F 115 85.22 1311 reject_low 271 ALIGNMENT 0 Y12-20j09.q1k chr05 359 62 575091 575090 C 298 0.00 1311 reject_low 54 ALIGNMENT 61 Y12-20j09.q1k chr12 521 348 1076265 1076438 C 174 80.46 1311 reject_low 327 ALIGNMENT 86 Y12-20j09.q1k chr12 360 535 7553 7728 F 176 85.23 1311 reject_low 233 ALIGNMENT 0 Y12-20j09.q1k chr08 580 428 560440 560439 C 153 0.00 1311 reject_low 315 ALIGNMENT 148 Y12-20j09.q1k chr12 385 724 1683 2020 F 340 82.94 1311 reject_low 111 ALIGNMENT 155 Y12-20j09.q1k chr16 349 657 1555 1861 F 309 85.76 1311 reject_low 136 ALIGNMENT 810 Y12-20j09.p1k chr02 1030 17 4212 5262 C 1014 94.28 1348 reject_low 10 ALIGNMENT 0 Y12-20j09.q1k chr05 62 420 1470 1469 F 359 0.00 1311 reject_low 42 ALIGNMENT 95 Y12-20j09.q1k chr04 594 349 1530064 1530308 C 246 82.11 1311 reject_low 217 ALIGNMENT 0 Y12-20j09.q1k chr06 62 384 893 892 F 323 0.00 1311 reject_low 243 ALIGNMENT 33 Y12-20j09.q1k chr12 348 413 7685 7750 F 66 84.85 1311 reject_low 307 ALIGNMENT 0 Y12-20j09.q1k chr06 62 613 905 904 F 552 0.00 1311 reject_low 238 ALIGNMENT 0 Y12-20j09.q1k chr16 464 580 1885 1884 F 117 0.00 1311 reject_low 271 ALIGNMENT 43 Y12-20j09.q1k chr06 360 574 1048 1261 F 215 75.81 1311 reject_low 300 ALIGNMENT 0 Y12-20j09.q1k chr13 464 580 2069 2068 F 117 0.00 1311 reject_low 269 ALIGNMENT 55 Y12-20j09.q1k chr14 529 631 1574 1675 F 103 87.38 1311 reject_low 264 ALIGNMENT 64 Y12-20j09.q1k chr12 348 521 2042 2215 F 174 81.03 1311 reject_low 333 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 1830 1829 F 287 0.00 1311 reject_low 159 ALIGNMENT 90 Y12-20j09.q1k chr05 493 702 1470 1677 F 210 82.86 1311 reject_low 41 ALIGNMENT 0 Y12-20j09.q1k chr09 508 580 2096 2095 F 73 0.00 1311 reject_low 232 ALIGNMENT 0 Y12-20j09.q1k chr06 538 580 1261 1260 F 43 0.00 1311 reject_low 316 ALIGNMENT 0 Y12-20j09.q1k chr13 62 351 1814 1813 F 290 0.00 1311 reject_low 213 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 2098 2097 F 287 0.00 1311 reject_low 170 ALIGNMENT 83 Y12-20j09.q1k chr15 535 360 1089251 1089426 C 176 84.66 1311 reject_low 240 ALIGNMENT 163 Y12-20j09.q1k chr12 360 657 1874 2169 F 298 87.25 1311 reject_low 128 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1830 1829 F 287 0.00 1311 reject_low 61 ALIGNMENT 0 Y12-20j09.q1k chr08 565 62 560842 560841 C 504 0.00 1311 reject_low 280 ALIGNMENT 0 Y12-20j09.q1k chr12 62 347 7685 7684 F 286 0.00 1311 reject_low 307 ALIGNMENT 0 Y12-20j09.q1k chr09 62 596 1681 1680 F 535 0.00 1311 reject_low 320 ALIGNMENT 55 Y12-20j09.q1k chr05 631 529 575216 575317 C 103 87.38 1311 reject_low 62 ALIGNMENT 239 Y12-20j09.q1k chr09 385 724 1686 2023 F 340 91.76 1311 reject_low 76 ALIGNMENT 0 Y12-20j09.q1k chr06 62 348 1001 1000 F 287 0.00 1311 reject_low 259 ALIGNMENT 152 Y12-20j09.q1k chr12 657 349 1076311 1076617 C 309 85.44 1311 reject_low 36 ALIGNMENT 44 Y12-20j09.q1k chr12 566 657 7326 7416 F 92 84.78 1311 reject_low 334 ALIGNMENT 52 Y12-20j09.q1k chr15 463 349 1089251 1089365 C 115 84.35 1311 reject_low 276 ALIGNMENT 0 Y12-20j09.q1k chr15 348 62 1089582 1089581 C 287 0.00 1311 reject_low 146 ALIGNMENT 152 Y12-20j09.q1k chr04 657 349 1530110 1530416 C 309 85.44 1311 reject_low 145 ALIGNMENT 0 Y12-20j09.q1k chr07 420 62 1089395 1089394 C 359 0.00 1311 reject_low 138 ALIGNMENT 0 Y12-20j09.q1k chr14 414 580 1998 1997 F 167 0.00 1311 reject_low 309 ALIGNMENT 0 Y12-20j09.q1k chr14 62 347 1825 1824 F 286 0.00 1311 reject_low 250 ALIGNMENT 0 Y12-20j09.q1k chr14 62 351 1685 1684 F 290 0.00 1311 reject_low 183 ALIGNMENT 44 Y12-20j09.q1k chr02 566 657 1486 1576 F 92 84.78 1311 reject_low 277 ALIGNMENT 0 Y12-20j09.q1k chr13 536 580 2069 2068 F 45 0.00 1311 reject_low 234 ALIGNMENT 0 Y12-20j09.q1k chr05 348 62 575282 575281 C 287 0.00 1311 reject_low 21 ALIGNMENT 155 Y12-20j09.q1k chr14 349 657 1646 1952 F 309 85.76 1311 reject_low 135 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 1558 1557 F 287 0.00 1311 reject_low 112 ALIGNMENT 152 Y12-20j09.q1k chr13 385 724 1667 2004 F 340 83.24 1311 reject_low 104 ALIGNMENT 0 Y12-20j09.q1k chr12 533 532 2191 7329 F 0 0.00 1311 reject_low 332 ALIGNMENT 131 Y12-20j09.q1k chr08 457 695 1651 1887 F 239 87.03 1311 reject_low 149 ALIGNMENT 0 Y12-20j09.q1k chr16 62 565 1483 1482 F 504 0.00 1311 reject_low 284 ALIGNMENT 75 Y12-20j09.q1k chr06 385 605 893 1112 F 221 80.54 1311 reject_low 243 ALIGNMENT 0 Y12-20j09.q1k chr05 348 62 575030 575029 C 287 0.00 1311 reject_low 64 ALIGNMENT 94 Y12-20j09.q1k chr08 385 637 1651 1902 F 253 81.42 1311 reject_low 219 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 1741 1740 F 287 0.00 1311 reject_low 148 ALIGNMENT 0 Y12-20j09.q1k chr05 351 62 575171 575170 C 290 0.00 1311 reject_low 49 ALIGNMENT 47 Y12-20j09.q1k chr07 449 349 1089006 1089106 C 101 84.16 1311 reject_low 287 ALIGNMENT 169 Y12-20j09.q1k chr02 349 695 1558 1902 F 347 85.01 1311 reject_low 112 ALIGNMENT 114 Y12-20j09.q1k chr05 349 605 1686 1941 F 257 84.05 1311 reject_low 44 ALIGNMENT 86 Y12-20j09.q1k chr12 493 724 7326 7555 F 232 80.60 1311 reject_low 331 ALIGNMENT 120 Y12-20j09.q1k chr13 457 724 1667 1932 F 268 83.21 1311 reject_low 122 ALIGNMENT 55 Y12-20j09.q1k chr12 631 529 1069925 1070026 C 103 87.38 1311|0,4 reject_low 326,327 ALIGNMENT 141 Y12-20j09.q1k chr02 348 724 1953 2327 F 377 80.90 1311 reject_low 118 ALIGNMENT 0 Y12-20j09.q1k chr15 348 62 1089366 1089365 C 287 0.00 1311 reject_low 276 ALIGNMENT 44 Y12-20j09.q1k chr13 566 657 1667 1757 F 92 84.78 1311 reject_low 281 ALIGNMENT 117 Y12-20j09.q1k chr05 637 352 574922 575206 C 286 82.52 1311 reject_low 40 ALIGNMENT 71 Y12-20j09.q1k chr12 521 360 1069638 1069799 C 162 83.33 1311 reject_low 58 ALIGNMENT 0 Y12-20j09.q1k chr09 62 384 1686 1685 F 323 0.00 1311 reject_low 76 ALIGNMENT 120 Y12-20j09.q1k chr14 457 724 1574 1839 F 268 83.21 1311 reject_low 123 ALIGNMENT 0 Y12-20j09.q1k chr15 347 62 1089295 1089294 C 286 0.00 1311 reject_low 310 ALIGNMENT 86 Y12-20j09.q1k chr05 535 360 574915 575090 C 176 85.23 1311 reject_low 54 ALIGNMENT 0 Y12-20j09.q1k chr04 528 62 1530489 1530488 C 467 0.00 1311 reject_low 260 ALIGNMENT 43 Y12-20j09.q1k chr13 360 427 2002 2069 F 68 89.71 1311 reject_low 295 ALIGNMENT 0 Y12-20j09.q1k chr15 580 536 1089252 1089251 C 45 0.00 1311 reject_low 240 ALIGNMENT 110 Y12-20j09.q1k chr02 349 594 2170 2414 F 246 84.15 1311 reject_low 193 ALIGNMENT 0 Y12-20j09.q1k chr08 420 62 560842 560841 C 359 0.00 1311 reject_low 168 ALIGNMENT 0 Y12-20j09.q1k chr12 62 351 1902 1901 F 290 0.00 1311 reject_low 179 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 1722 1721 F 287 0.00 1311 reject_low 115 ALIGNMENT 37 Y12-20j09.q1k chr02 360 427 2325 2392 F 68 86.76 1311 reject_low 314 ALIGNMENT 136 Y12-20j09.q1k chr12 421 637 1683 1898 F 217 89.86 1311 reject_low 163 ALIGNMENT 64 Y12-20j09.q1k chr16 348 521 1734 1907 F 174 81.03 1311 reject_low 251 ALIGNMENT 0 Y12-20j09.q1k chr16 580 414 945963 945962 C 167 0.00 1311 reject_low 312 ALIGNMENT 54 Y12-20j09.q1k chr10 349 428 2029 2108 F 80 91.25 1311 reject_low 267 ALIGNMENT 43 Y12-20j09.q1k chr15 427 360 1089251 1089318 C 68 89.71 1311 reject_low 297 ALIGNMENT 122 Y12-20j09.q1k chr05 349 637 1650 1937 F 289 83.04 1311 reject_low 39 ALIGNMENT 0 Y12-20j09.q1k chr02 62 347 1953 1952 F 286 0.00 1311 reject_low 118 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 7362 7361 F 287 0.00 1311 reject_low 83 ALIGNMENT 98 Y12-20j09.q1k chr16 594 349 945962 946206 C 246 82.52 1311 reject_low 209 ALIGNMENT 0 Y12-20j09.q1k chr12 384 62 1070027 1070026 C 323 0.00 1311 reject_low 27 ALIGNMENT 0 Y12-20j09.q1k chr08 348 62 560662 560661 C 287 0.00 1311 reject_low 194 ALIGNMENT 0 Y12-20j09.q1k chr09 62 528 1686 1685 F 467 0.00 1311 reject_low 244 ALIGNMENT 0 Y12-20j09.q1k chr06 62 359 976 975 F 298 0.00 1311 reject_low 247 ALIGNMENT 120 Y12-20j09.q1k chr16 457 724 1483 1748 F 268 83.21 1311 reject_low 125 ALIGNMENT 0 Y12-20j09.q1k chr14 428 580 1976 1975 F 153 0.00 1311 reject_low 296 ALIGNMENT 819 Y12-20j09.p1k chr12 1030 27 9546 10585 C 1004 94.82 1348 reject_low 16 ALIGNMENT 152 Y12-20j09.q1k chr16 385 724 1483 1820 F 340 83.24 1311 reject_low 106 ALIGNMENT 0 Y12-20j09.q1k chr09 469 580 2093 2092 F 112 0.00 1311 reject_low 225 ALIGNMENT 202 Y12-20j09.q1k chr12 695 349 1076309 1076653 C 347 88.18 1311 reject_low 23 ALIGNMENT 0 Y12-20j09.q1k chr16 580 428 945985 945984 C 153 0.00 1311 reject_low 299 ALIGNMENT 0 Y12-20j09.q1k chr12 580 559 1069639 1069638 C 22 0.00 1311 reject_low 55 ALIGNMENT 0 Y12-20j09.q1k chr16 62 351 1630 1629 F 290 0.00 1311 reject_low 215 ALIGNMENT 0 Y12-20j09.q1k chr04 348 62 1530309 1530308 C 287 0.00 1311 reject_low 217 ALIGNMENT 209 Y12-20j09.q1k chr05 349 724 1542 1915 F 376 86.97 1311 reject_low 20 ALIGNMENT 545 Y12-20j09.q1k chr09 2 702 1339 2037 F 701 93.30 1311 reject_low 1 ALIGNMENT 0 Y12-20j09.q1k chr12 580 378 1069639 1069638 C 203 0.00 1311 reject_low 75 ALIGNMENT 58 Y12-20j09.q1k chr06 566 724 893 1050 F 159 79.87 1311 reject_low 202 ALIGNMENT 129 Y12-20j09.q1k chr08 637 352 560446 560730 C 286 83.92 1311 reject_low 169 ALIGNMENT 0 Y12-20j09.q1k chr16 492 62 946495 946494 C 431 0.00 1311 reject_low 157 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 1755 1754 F 287 0.00 1311 reject_low 81 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 1849 1848 F 287 0.00 1311 reject_low 165 ALIGNMENT 0 Y12-20j09.q1k chr04 347 62 1530238 1530237 C 286 0.00 1311 reject_low 255 ALIGNMENT 55 Y12-20j09.q1k chr07 631 529 1089293 1089394 C 103 87.38 1311 reject_low 261 ALIGNMENT 103 Y12-20j09.q1k chr05 349 662 1722 2033 F 314 79.94 1311 reject_low 46 ALIGNMENT 94 Y12-20j09.q1k chr15 605 352 1089254 1089506 C 254 81.50 1311 reject_low 221 ALIGNMENT 0 Y12-20j09.q1k chr12 522 580 7750 7749 F 59 0.00 1311 reject_low 248 ALIGNMENT 33 Y12-20j09.q1k chr14 348 413 1933 1998 F 66 84.85 1311 reject_low 309 ALIGNMENT 0 Y12-20j09.q1k chr08 404 580 1921 1920 F 177 0.00 1311 reject_low 313 ALIGNMENT 49 Y12-20j09.q1k chr02 349 463 2278 2392 F 115 83.48 1311 reject_low 285 ALIGNMENT 55 Y12-20j09.q1k chr16 529 631 1483 1584 F 103 87.38 1311 reject_low 266 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 1719 1718 F 287 0.00 1311 reject_low 93 ALIGNMENT 0 Y12-20j09.q1k chr09 62 343 1897 1896 F 282 0.00 1311 reject_low 162 ALIGNMENT 41 Y12-20j09.q1k chr10 566 631 1669 1734 F 66 89.39 1311 reject_low 292 ALIGNMENT 161 Y12-20j09.q1k chr16 724 349 946013 946386 C 376 82.71 1311 reject_low 95 ALIGNMENT 0 Y12-20j09.q1k chr13 62 456 1667 1666 F 395 0.00 1311 reject_low 122 ALIGNMENT 97 Y12-20j09.q1k chr12 352 605 1938 2190 F 254 81.89 1311 reject_low 211 ALIGNMENT 151 Y12-20j09.q1k chr16 724 385 946157 946494 C 340 83.24 1311 reject_low 107 ALIGNMENT 0 Y12-20j09.q1k chr12 62 347 2042 2041 F 286 0.00 1311 reject_low 333 ALIGNMENT 184 Y12-20j09.q1k chr09 349 657 1722 2028 F 309 89.00 1311 reject_low 115 ALIGNMENT 529 Y12-20j09.q1k chr12 5 724 6982 7699 F 720 91.81 1311 reject_low 16 ALIGNMENT 0 Y12-20j09.q1k chr12 464 492 2194 7325 F 29 0.00 1311 reject_low 331 ALIGNMENT 98 Y12-20j09.q1k chr13 349 594 1847 2091 F 246 82.52 1311 reject_low 206 ALIGNMENT 0 Y12-20j09.q1k chr12 428 580 7728 7727 F 153 0.00 1311 reject_low 294 ALIGNMENT 0 Y12-20j09.q1k chr12 565 62 1076690 1076689 C 504 0.00 1311 reject_low 66 ALIGNMENT 50 Y12-20j09.q1k chr06 614 696 905 986 F 83 87.95 1311 reject_low 238 ALIGNMENT 30 Y12-20j09.q1k chr05 348 501 1901 2054 F 154 75.32 1311 reject_low 74 ALIGNMENT 0 Y12-20j09.q1k chr13 62 492 1667 1666 F 431 0.00 1311 reject_low 174 ALIGNMENT 120 Y12-20j09.q1k chr07 724 457 1089129 1089394 C 268 83.21 1311 reject_low 121 ALIGNMENT 188 Y12-20j09.q1k chr16 724 349 946049 946422 C 376 85.11 1311 reject_low 80 ALIGNMENT 0 Y12-20j09.q1k chr16 384 62 946495 946494 C 323 0.00 1311 reject_low 107 ALIGNMENT 0 Y12-20j09.q1k chr12 425 424 2191 7329 F 0 0.00 1311 reject_low 330 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 7506 7505 F 287 0.00 1311 reject_low 205 ALIGNMENT 0 Y12-20j09.q1k chr05 62 492 1470 1469 F 431 0.00 1311 reject_low 41 ALIGNMENT 0 Y12-20j09.q1k chr07 565 62 1089395 1089394 C 504 0.00 1311 reject_low 279 ALIGNMENT 0 Y12-20j09.q1k chr14 62 347 1933 1932 F 286 0.00 1311 reject_low 309 ALIGNMENT 86 Y12-20j09.q1k chr13 360 535 1894 2069 F 176 85.23 1311 reject_low 234 ALIGNMENT 137 Y12-20j09.q1k chr13 421 695 1667 1939 F 275 85.45 1311 reject_low 139 ALIGNMENT 64 Y12-20j09.q1k chr12 348 521 7577 7750 F 174 81.03 1311 reject_low 248 ALIGNMENT 133 Y12-20j09.q1k chr08 724 385 560504 560841 C 340 81.47 1311 reject_low 119 ALIGNMENT 0 Y12-20j09.q1k chr13 62 347 2026 2025 F 286 0.00 1311 reject_low 308 ALIGNMENT 0 Y12-20j09.q1k chr13 62 348 1847 1846 F 287 0.00 1311 reject_low 206 ALIGNMENT 33 Y12-20j09.q1k chr05 413 348 574893 574958 C 66 84.85 1311 reject_low 71 ALIGNMENT 962 Y12-20j09.p1k chr12 95 1318 1065785 1067012 F 1224 94.04 1348 accept_tel 0 ALIGNMENT 67 Y12-20j09.q1k chr05 529 657 1470 1596 F 129 86.82 1311 reject_low 56 ALIGNMENT 0 Y12-20j09.q1k chr08 62 347 1866 1865 F 286 0.00 1311 reject_low 313 ALIGNMENT 0 Y12-20j09.q1k chr10 391 580 2106 2105 F 190 0.00 1311 reject_low 304 ALIGNMENT 95 Y12-20j09.q1k chr15 594 349 1089229 1089473 C 246 82.11 1311 reject_low 218 ALIGNMENT 0 Y12-20j09.q1k chr16 62 492 1483 1482 F 431 0.00 1311 reject_low 177 ALIGNMENT 43 Y12-20j09.q1k chr12 427 360 1076287 1076354 C 68 89.71 1311|3,0 reject_low 324,328 ALIGNMENT 55 Y12-20j09.q1k chr12 529 631 7326 7427 F 103 87.38 1311|4,0 reject_low 332,333 ALIGNMENT 0 Y12-20j09.q1k chr12 522 528 2216 7325 F 7 0.00 1311 reject_low 333 ALIGNMENT 0 Y12-20j09.q1k chr13 62 565 1667 1666 F 504 0.00 1311 reject_low 281 ALIGNMENT 0 Y12-20j09.q1k chr08 62 384 1651 1650 F 323 0.00 1311 reject_low 219 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 1827 1826 F 287 0.00 1311 reject_low 94 ALIGNMENT 0 Y12-20j09.q1k chr08 62 348 1759 1758 F 287 0.00 1311 reject_low 273 ALIGNMENT 0 Y12-20j09.q1k chr08 528 580 1937 1936 F 53 0.00 1311 reject_low 273 ALIGNMENT 64 Y12-20j09.q1k chr05 349 574 1830 2054 F 226 78.76 1311 reject_low 61 ALIGNMENT 152 Y12-20j09.q1k chr05 724 385 574980 575317 C 340 83.24 1311 reject_low 25 ALIGNMENT 0 Y12-20j09.q1k chr08 62 348 1687 1686 F 287 0.00 1311 reject_low 222 ALIGNMENT 0 Y12-20j09.q1k chr14 62 348 1610 1609 F 287 0.00 1311 reject_low 85 ALIGNMENT 120 Y12-20j09.q1k chr05 724 457 575052 575317 C 268 83.21 1311 reject_low 30 ALIGNMENT 0 Y12-20j09.q1k chr10 62 492 1669 1668 F 431 0.00 1311 reject_low 199 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 1791 1790 F 287 0.00 1311 reject_low 100 ALIGNMENT 888 Y12-20j09.p1k chr04 27 1230 1526062 1527300 F 1204 92.52 1348 reject_low 6 ALIGNMENT 0 Y12-20j09.q1k chr09 540 580 2092 2091 F 41 0.00 1311 reject_low 162 ALIGNMENT 0 Y12-20j09.q1k chr02 522 580 2414 2413 F 59 0.00 1311 reject_low 253 ALIGNMENT 0 Y12-20j09.q1k chr05 580 414 574894 574893 C 167 0.00 1311 reject_low 71 ALIGNMENT 0 Y12-20j09.q1k chr05 580 464 574916 574915 C 117 0.00 1311 reject_low 64 ALIGNMENT 44 Y12-20j09.q1k chr12 566 631 1683 1748 F 66 90.91 1311 reject_low 288 ALIGNMENT 157 Y12-20j09.q1k chr09 349 631 1758 2039 F 283 87.63 1311 reject_low 147 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 1777 1776 F 287 0.00 1311 reject_low 144 ALIGNMENT 151 Y12-20j09.q1k chr10 349 662 1777 2088 F 314 85.03 1311 reject_low 144 ALIGNMENT 0 Y12-20j09.q1k chr05 502 580 2054 2053 F 79 0.00 1311 reject_low 74 ALIGNMENT 152 Y12-20j09.q1k chr15 657 349 1089275 1089581 C 309 85.44 1311 reject_low 146 ALIGNMENT 112 Y12-20j09.q1k chr07 630 352 1089006 1089283 C 279 82.44 1311 reject_low 192 ALIGNMENT 0 Y12-20j09.q1k chr08 62 565 1651 1650 F 504 0.00 1311 reject_low 210 ALIGNMENT 154 Y12-20j09.q1k chr02 348 724 1845 2219 F 377 81.96 1311 reject_low 101 ALIGNMENT 0 Y12-20j09.q1k chr05 565 62 575318 575317 C 504 0.00 1311 reject_low 65 ALIGNMENT 41 Y12-20j09.q1k chr09 566 631 1686 1751 F 66 89.39 1311 reject_low 291 ALIGNMENT 777 Y12-20j09.p1k chr05 95 1230 570982 572129 F 1136 91.20 1348 reject_low 18 ALIGNMENT 0 Y12-20j09.q1k chr16 565 62 946495 946494 C 504 0.00 1311 reject_low 289 ALIGNMENT 95 Y12-20j09.q1k chr12 594 349 1076265 1076509 C 246 82.11 1311 reject_low 51 ALIGNMENT 137 Y12-20j09.q1k chr04 695 421 1530216 1530488 C 275 85.45 1311 reject_low 137 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 1813 1812 F 287 0.00 1311 reject_low 151 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1542 1541 F 287 0.00 1311 reject_low 20 ALIGNMENT 0 Y12-20j09.q1k chr07 359 62 1089060 1089059 C 298 0.00 1311 reject_low 317 ALIGNMENT 0 Y12-20j09.p1k chr05 94 58 5882 5894 C 37 0.00 1348 reject_low 17 ALIGNMENT 97 Y12-20j09.q1k chr16 605 352 945987 946239 C 254 81.89 1311 reject_low 216 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 1677 1676 F 298 0.00 1311 reject_low 158 ALIGNMENT 0 Y12-20j09.q1k chr04 384 62 1530489 1530488 C 323 0.00 1311 reject_low 109 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 1990 1989 F 287 0.00 1311 reject_low 108 ALIGNMENT 0 Y12-20j09.q1k chr12 359 62 1069692 1069691 C 298 0.00 1311 reject_low 73 ALIGNMENT 0 Y12-20j09.q1k chr13 428 580 2069 2068 F 153 0.00 1311 reject_low 295 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 7398 7397 F 287 0.00 1311 reject_low 133 ALIGNMENT 0 Y12-20j09.q1k chr07 347 62 1089036 1089035 C 286 0.00 1311 reject_low 322 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 2029 2028 F 287 0.00 1311 reject_low 267 ALIGNMENT 86 Y12-20j09.q1k chr16 493 724 1483 1712 F 232 80.60 1311 reject_low 177 ALIGNMENT 109 Y12-20j09.q1k chr08 605 352 560442 560694 C 254 83.46 1311 reject_low 197 ALIGNMENT 0 Y12-20j09.q1k chr06 62 347 1072 1071 F 286 0.00 1311 reject_low 316 ALIGNMENT 887 Y12-20j09.p1k chr15 27 1229 1085227 1086464 F 1203 92.52 1348 reject_low 8 ALIGNMENT 94 Y12-20j09.q1k chr12 605 352 1076290 1076542 C 254 81.50 1311 reject_low 52 ALIGNMENT 61 Y12-20j09.q1k chr15 521 348 1089229 1089402 C 174 80.46 1311 reject_low 256 ALIGNMENT 0 Y12-20j09.q1k chr13 62 348 1955 1954 F 287 0.00 1311 reject_low 269 ALIGNMENT 0 Y12-20j09.q1k chr13 62 528 1667 1666 F 467 0.00 1311 reject_low 263 ALIGNMENT 0 Y12-20j09.q1k chr15 565 62 1089654 1089653 C 504 0.00 1311 reject_low 283 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 1866 1865 F 287 0.00 1311 reject_low 188 ALIGNMENT 0 Y12-20j09.q1k chr10 62 456 1669 1668 F 395 0.00 1311 reject_low 114 ALIGNMENT 0 Y12-20j09.q1k chr14 464 580 1976 1975 F 117 0.00 1311 reject_low 270 ALIGNMENT 97 Y12-20j09.q1k chr16 352 605 1630 1882 F 254 81.89 1311 reject_low 215 ALIGNMENT 205 Y12-20j09.q1k chr12 349 695 7362 7706 F 347 88.47 1311 reject_low 83 ALIGNMENT 52 Y12-20j09.q1k chr04 463 349 1530086 1530200 C 115 84.35 1311 reject_low 275 ALIGNMENT 33 Y12-20j09.q1k chr12 413 348 1076265 1076330 C 66 84.85 1311 reject_low 72 ALIGNMENT 89 Y12-20j09.q1k chr08 535 360 560439 560614 C 176 85.80 1311 reject_low 229 ALIGNMENT 0 Y12-20j09.q1k chr02 62 492 1486 1485 F 431 0.00 1311 reject_low 191 ALIGNMENT 0 Y12-20j09.q1k chr04 351 62 1530342 1530341 C 290 0.00 1311 reject_low 220 ALIGNMENT 0 Y12-20j09.q1k chr10 537 580 2108 2107 F 44 0.00 1311 reject_low 196 ALIGNMENT 45 Y12-20j09.q1k chr09 360 432 2021 2093 F 73 89.04 1311 reject_low 290 ALIGNMENT 0 Y12-20j09.q1k chr10 62 420 1669 1668 F 359 0.00 1311 reject_low 90 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 2145 2144 F 298 0.00 1311 reject_low 195 ALIGNMENT 0 Y12-20j09.q1k chr16 359 62 946304 946303 C 298 0.00 1311 reject_low 126 ALIGNMENT 112 Y12-20j09.q1k chr02 457 657 1486 1684 F 201 87.56 1311 reject_low 180 ALIGNMENT 888 Y12-20j09.p1k chr12 27 1230 1072263 1073501 F 1204 92.52 1348 reject_low 7 ALIGNMENT 52 Y12-20j09.q1k chr06 541 724 904 1086 F 184 77.17 1311 reject_low 230 ALIGNMENT 120 Y12-20j09.q1k chr15 724 457 1089388 1089653 C 268 83.21 1311 reject_low 124 ALIGNMENT 0 Y12-20j09.q1k chr04 347 62 1530130 1530129 C 286 0.00 1311 reject_low 305 ALIGNMENT 83 Y12-20j09.q1k chr04 535 360 1530086 1530261 C 176 84.66 1311 reject_low 239 ALIGNMENT 0 Y12-20j09.q1k chr08 528 62 560842 560841 C 467 0.00 1311 reject_low 262 ALIGNMENT 0 Y12-20j09.q1k chr06 62 492 893 892 F 431 0.00 1311 reject_low 200 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1076618 1076617 C 287 0.00 1311 reject_low 36 ALIGNMENT 0 Y12-20j09.q1k chr05 420 62 575318 575317 C 359 0.00 1311 reject_low 33 ALIGNMENT 112 Y12-20j09.q1k chr08 421 657 1651 1885 F 237 84.81 1311 reject_low 187 ALIGNMENT 181 Y12-20j09.q1k chr02 349 695 2026 2370 F 347 86.17 1311 reject_low 99 ALIGNMENT 86 Y12-20j09.q1k chr12 360 535 2018 2193 F 176 85.23 1311|0,3 reject_low 332 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 2361 2360 F 298 0.00 1311 reject_low 318 ALIGNMENT 236 Y12-20j09.q1k chr02 349 724 1522 1895 F 376 89.36 1311 reject_low 78 ALIGNMENT 98 Y12-20j09.q1k chr12 349 594 7506 7750 F 246 82.52 1311 reject_low 205 ALIGNMENT 0 Y12-20j09.q1k chr04 351 62 1530378 1530377 C 290 0.00 1311 reject_low 189 ALIGNMENT 0 Y12-20j09.q1k chr16 580 522 945963 945962 C 59 0.00 1311 reject_low 252 ALIGNMENT 61 Y12-20j09.q1k chr04 521 348 1530064 1530237 C 174 80.46 1311 reject_low 255 ALIGNMENT 0 Y12-20j09.q1k chr04 348 62 1530417 1530416 C 287 0.00 1311 reject_low 145 ALIGNMENT 86 Y12-20j09.q1k chr08 724 493 560612 560841 C 232 80.60 1311 reject_low 173 ALIGNMENT 89 Y12-20j09.q1k chr02 360 535 2217 2392 F 176 85.80 1311 reject_low 228 ALIGNMENT 190 Y12-20j09.q1k chr16 695 349 946006 946350 C 347 87.03 1311 reject_low 91 ALIGNMENT 0 Y12-20j09.q1k chr04 348 62 1530201 1530200 C 287 0.00 1311 reject_low 275 ALIGNMENT 0 Y12-20j09.q1k chr13 62 347 1918 1917 F 286 0.00 1311 reject_low 249 ALIGNMENT 0 Y12-20j09.q1k chr02 536 580 2392 2391 F 45 0.00 1311 reject_low 228 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 1758 1757 F 287 0.00 1311 reject_low 147 ALIGNMENT 0 Y12-20j09.q1k chr12 351 62 1069916 1069915 C 290 0.00 1311 reject_low 45 ALIGNMENT 0 Y12-20j09.q1k chr04 580 522 1530065 1530064 C 59 0.00 1311 reject_low 255 ALIGNMENT 0 Y12-20j09.q1k chr10 62 565 1669 1668 F 504 0.00 1311 reject_low 292 ALIGNMENT 0 Y12-20j09.q1k chr12 62 528 1683 1682 F 467 0.00 1311 reject_low 185 ALIGNMENT 0 Y12-20j09.q1k chr08 456 62 560842 560841 C 395 0.00 1311 reject_low 167 ALIGNMENT 157 Y12-20j09.q1k chr10 349 631 1741 2022 F 283 87.63 1311 reject_low 148 ALIGNMENT 0 Y12-20j09.q1k chr14 62 456 1574 1573 F 395 0.00 1311 reject_low 123 ALIGNMENT 55 Y12-20j09.q1k chr16 463 349 945984 946098 C 115 85.22 1311 reject_low 272 ALIGNMENT 185 Y12-20j09.q1k chr12 349 724 1755 2128 F 376 84.84 1311 reject_low 81 ALIGNMENT 0 Y12-20j09.q1k chr14 62 492 1574 1573 F 431 0.00 1311 reject_low 175 ALIGNMENT 0 Y12-20j09.q1k chr12 532 533 1070023 1076289 C 0 0.00 1311 reject_low 326 ALIGNMENT 33 Y12-20j09.q1k chr12 348 413 2150 2215 F 66 84.85 1311 reject_low 306 ALIGNMENT 44 Y12-20j09.q1k chr05 657 566 575227 575317 C 92 84.78 1311 reject_low 65 ALIGNMENT 137 Y12-20j09.q1k chr05 695 421 575045 575317 C 275 85.45 1311 reject_low 33 ALIGNMENT 0 Y12-20j09.q1k chr12 62 351 1938 1937 F 290 0.00 1311 reject_low 211 ALIGNMENT 899 Y12-20j09.p1k chr16 1227 17 4674 5915 C 1211 92.57 1348 reject_low 5 ALIGNMENT 47 Y12-20j09.q1k chr05 360 537 1877 2054 F 178 77.53 1311 reject_low 68 ALIGNMENT 0 Y12-20j09.q1k chr15 580 522 1089230 1089229 C 59 0.00 1311 reject_low 256 ALIGNMENT 64 Y12-20j09.q1k chr14 348 521 1825 1998 F 174 81.03 1311 reject_low 250 ALIGNMENT 0 Y12-20j09.q1k chr07 580 450 1089007 1089006 C 131 0.00 1311 reject_low 287 ALIGNMENT 0 Y12-20j09.q1k chr08 62 359 1842 1841 F 298 0.00 1311 reject_low 302 ALIGNMENT 0 Y12-20j09.q1k chr04 492 62 1530489 1530488 C 431 0.00 1311 reject_low 171 ALIGNMENT 819 Y12-20j09.p1k chr08 1030 27 3743 4782 C 1004 94.82 1348 reject_low 13 ALIGNMENT 91 Y12-20j09.q1k chr02 493 695 1486 1686 F 203 83.74 1311 reject_low 191 ALIGNMENT 55 Y12-20j09.q1k chr12 631 529 1076588 1076689 C 103 87.38 1311 reject_low 63 ALIGNMENT 149 Y12-20j09.q1k chr12 724 385 1069689 1070026 C 340 82.94 1311 reject_low 27 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 2046 2045 F 287 0.00 1311 reject_low 303 ALIGNMENT 44 Y12-20j09.q1k chr12 657 566 1076599 1076689 C 92 84.78 1311 reject_low 66 ALIGNMENT 55 Y12-20j09.q1k chr04 631 529 1530387 1530488 C 103 87.38 1311 reject_low 260 ALIGNMENT 819 Y12-20j09.p1k chr12 1030 27 4011 5050 C 1004 94.82 1348 reject_low 11 ALIGNMENT 0 Y12-20j09.q1k chr16 62 420 1483 1482 F 359 0.00 1311 reject_low 142 ALIGNMENT 0 Y12-20j09.q1k chr12 359 62 1076463 1076462 C 298 0.00 1311 reject_low 326 ALIGNMENT 0 Y12-20j09.q1k chr05 62 359 1805 1804 F 298 0.00 1311 reject_low 59 ALIGNMENT 0 Y12-20j09.q1k chr02 464 580 2392 2391 F 117 0.00 1311 reject_low 285 ALIGNMENT 0 Y12-20j09.q1k chr08 580 536 560440 560439 C 45 0.00 1311 reject_low 229 ALIGNMENT 103 Y12-20j09.q1k chr10 349 500 1957 2108 F 152 91.45 1311 reject_low 201 ALIGNMENT 158 Y12-20j09.q1k chr12 349 724 1791 2164 F 376 82.45 1311 reject_low 100 ALIGNMENT 55 Y12-20j09.q1k chr14 349 463 1862 1976 F 115 85.22 1311 reject_low 270 ALIGNMENT 0 Y12-20j09.q1k chr08 580 414 560418 560417 C 167 0.00 1311 reject_low 319 ALIGNMENT 0 Y12-20j09.q1k chr05 580 428 574916 574915 C 153 0.00 1311 reject_low 70 ALIGNMENT 556 Y12-20j09.q1k chr08 724 5 560468 561185 C 720 93.06 1311 reject_low 12 ALIGNMENT 33 Y12-20j09.q1k chr15 413 348 1089229 1089294 C 66 84.85 1311 reject_low 310 ALIGNMENT 0 Y12-20j09.q1k chr10 62 359 1932 1931 F 298 0.00 1311 reject_low 196 ALIGNMENT 83 Y12-20j09.q1k chr12 558 349 1069638 1069846 C 210 82.38 1311 reject_low 55 ALIGNMENT 155 Y12-20j09.q1k chr13 349 657 1739 2045 F 309 85.76 1311 reject_low 134 ALIGNMENT 0 Y12-20j09.q1k chr04 580 428 1530087 1530086 C 153 0.00 1311 reject_low 293 ALIGNMENT 55 Y12-20j09.q1k chr15 631 529 1089552 1089653 C 103 87.38 1311 reject_low 265 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 1957 1956 F 287 0.00 1311 reject_low 201 ALIGNMENT 0 Y12-20j09.q1k chr05 62 456 1470 1469 F 395 0.00 1311 reject_low 47 ALIGNMENT 40 Y12-20j09.q1k chr08 360 427 1842 1909 F 68 88.24 1311 reject_low 302 ALIGNMENT 179 Y12-20j09.q1k chr08 657 349 560463 560769 C 309 88.35 1311 reject_low 117 ALIGNMENT 0 Y12-20j09.q1k chr13 62 359 1894 1893 F 298 0.00 1311 reject_low 234 ALIGNMENT 0 Y12-20j09.q1k chr08 62 359 1806 1805 F 298 0.00 1311 reject_low 301 ALIGNMENT 0 Y12-20j09.q1k chr07 348 62 1089107 1089106 C 287 0.00 1311 reject_low 287 ALIGNMENT 98 Y12-20j09.q1k chr16 349 594 1663 1907 F 246 82.52 1311 reject_low 208 ALIGNMENT 0 Y12-20j09.q1k chr07 347 62 1089144 1089143 C 286 0.00 1311 reject_low 274 ALIGNMENT 0 Y12-20j09.q1k chr06 62 359 1048 1047 F 298 0.00 1311 reject_low 300 ALIGNMENT 0 Y12-20j09.q1k chr16 359 62 946160 946159 C 298 0.00 1311 reject_low 237 ALIGNMENT 0 Y12-20j09.q1k chr05 580 522 574894 574893 C 59 0.00 1311 reject_low 60 ALIGNMENT 0 Y12-20j09.q1k chr08 348 62 560590 560589 C 287 0.00 1311 reject_low 254 ALIGNMENT 0 Y12-20j09.q1k chr09 62 492 1686 1685 F 431 0.00 1311 reject_low 198 ALIGNMENT 155 Y12-20j09.q1k chr05 657 349 574939 575245 C 309 85.76 1311 reject_low 32 ALIGNMENT 0 Y12-20j09.q1k chr12 62 359 1874 1873 F 298 0.00 1311 reject_low 128 ALIGNMENT 0 Y12-20j09.q1k chr12 62 384 1683 1682 F 323 0.00 1311 reject_low 111 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 2073 2072 F 298 0.00 1311 reject_low 130 ALIGNMENT 86 Y12-20j09.q1k chr07 724 493 1089165 1089394 C 232 80.60 1311 reject_low 172 ALIGNMENT 0 Y12-20j09.q1k chr02 62 359 2325 2324 F 298 0.00 1311 reject_low 314 ALIGNMENT 0 Y12-20j09.q1k chr08 348 62 560554 560553 C 287 0.00 1311 reject_low 286 ALIGNMENT 32 Y12-20j09.p1k chr05 57 17 5895 5937 C 41 95.12 1348 reject_low 17,19,20,24,26,29,39,41,42,44,46,47,50,56,57,59,61,68,74 ALIGNMENT 152 Y12-20j09.q1k chr12 657 349 1069648 1069954 C 309 85.44 1311 reject_low 35 ALIGNMENT 0 Y12-20j09.q1k chr06 62 637 892 891 F 576 0.00 1311 reject_low 227 ALIGNMENT 43 Y12-20j09.q1k chr08 360 463 1806 1909 F 104 82.69 1311 reject_low 301 ALIGNMENT 0 Y12-20j09.q1k chr15 420 62 1089654 1089653 C 359 0.00 1311 reject_low 141 ALIGNMENT 0 Y12-20j09.q1k chr15 351 62 1089507 1089506 C 290 0.00 1311 reject_low 221 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1076510 1076509 C 287 0.00 1311 reject_low 51 ALIGNMENT 0 Y12-20j09.q1k chr12 347 62 1076331 1076330 C 286 0.00 1311 reject_low 72 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1069739 1069738 C 287 0.00 1311 reject_low 69 ALIGNMENT 0 Y12-20j09.q1k chr12 62 420 1683 1682 F 359 0.00 1311 reject_low 163 ALIGNMENT 0 Y12-20j09.q1k chr08 428 580 1909 1908 F 153 0.00 1311 reject_low 302 ALIGNMENT 86 Y12-20j09.q1k chr14 493 724 1574 1803 F 232 80.60 1311 reject_low 175 ALIGNMENT 0 Y12-20j09.q1k chr12 565 428 1070027 1076286 C 138 0.00 1311 reject_low 328 ALIGNMENT 229 Y12-20j09.q1k chr08 695 349 560461 560805 C 347 90.78 1311 reject_low 79 ALIGNMENT 134 Y12-20j09.q1k chr02 360 695 1821 2154 F 336 82.14 1311 reject_low 152 ALIGNMENT 86 Y12-20j09.q1k chr16 360 535 1710 1885 F 176 85.23 1311 reject_low 236 ALIGNMENT 149 Y12-20j09.q1k chr12 724 385 1076352 1076689 C 340 82.94 1311 reject_low 28 ALIGNMENT 0 Y12-20j09.q1k chr04 580 414 1530065 1530064 C 167 0.00 1311 reject_low 305 ALIGNMENT 135 Y12-20j09.q1k chr10 457 724 1669 1934 F 268 85.07 1311 reject_low 114 ALIGNMENT 34 Y12-20j09.q1k chr06 348 537 1072 1261 F 190 74.74 1311 reject_low 316 ALIGNMENT 0 Y12-20j09.q1k chr12 62 492 1683 1682 F 431 0.00 1311 reject_low 156 ALIGNMENT 20 Y12-20j09.q1k chr12 377 348 1069638 1069667 C 30 90.00 1311 reject_low 75 ALIGNMENT 839 Y12-20j09.p1k chr06 1028 17 3050 4094 C 1012 95.26 1348 reject_low 14 ALIGNMENT 166 Y12-20j09.q1k chr16 657 360 946008 946303 C 298 87.58 1311 reject_low 126 ALIGNMENT 43 Y12-20j09.q1k chr16 360 427 1818 1885 F 68 89.71 1311 reject_low 298 ALIGNMENT 101 Y12-20j09.q1k chr10 493 637 1669 1812 F 145 92.41 1311 reject_low 199 ALIGNMENT 0 Y12-20j09.q1k chr16 414 580 1907 1906 F 167 0.00 1311 reject_low 311 ALIGNMENT 0 Y12-20j09.q1k chr14 62 359 1909 1908 F 298 0.00 1311 reject_low 296 ALIGNMENT 433 Y12-20j09.q1k chr06 5 592 549 1135 F 588 91.84 1311 reject_low 14 ALIGNMENT 55 Y12-20j09.q1k chr05 463 349 574915 575029 C 115 85.22 1311 reject_low 64 ALIGNMENT 202 Y12-20j09.q1k chr15 695 349 1089273 1089617 C 347 88.18 1311 reject_low 88 ALIGNMENT 0 Y12-20j09.q1k chr14 62 351 1721 1720 F 290 0.00 1311 reject_low 214 ALIGNMENT 559 Y12-20j09.q1k chr16 724 5 946121 946838 C 720 93.19 1311 reject_low 9 ALIGNMENT 0 Y12-20j09.q1k chr16 528 62 946495 946494 C 467 0.00 1311 reject_low 186 ALIGNMENT 0 Y12-20j09.q1k chr08 348 62 560806 560805 C 287 0.00 1311 reject_low 79 ALIGNMENT 0 Y12-20j09.q1k chr14 62 384 1574 1573 F 323 0.00 1311 reject_low 105 ALIGNMENT 205 Y12-20j09.q1k chr05 695 349 574937 575281 C 347 88.47 1311 reject_low 21 ALIGNMENT 0 Y12-20j09.q1k chr07 580 486 1089007 1089006 C 95 0.00 1311 reject_low 274 ALIGNMENT 0 Y12-20j09.q1k chr02 62 351 1705 1704 F 290 0.00 1311 reject_low 154 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 1971 1970 F 287 0.00 1311 reject_low 204 ALIGNMENT 0 Y12-20j09.q1k chr06 62 540 904 903 F 479 0.00 1311 reject_low 230 ALIGNMENT 0 Y12-20j09.q1k chr12 456 62 1076690 1076689 C 395 0.00 1311 reject_low 31 ALIGNMENT 44 Y12-20j09.q1k chr16 631 566 946429 946494 C 66 90.91 1311 reject_low 289 ALIGNMENT 0 Y12-20j09.q1k chr05 384 62 575318 575317 C 323 0.00 1311 reject_low 25 ALIGNMENT 0 Y12-20j09.q1k chr15 580 428 1089252 1089251 C 153 0.00 1311 reject_low 297 ALIGNMENT 130 Y12-20j09.q1k chr16 657 457 946296 946494 C 201 90.55 1311 reject_low 161 ALIGNMENT 0 Y12-20j09.q1k chr14 62 420 1574 1573 F 359 0.00 1311 reject_low 140 ALIGNMENT 0 Y12-20j09.q1k chr16 347 62 946028 946027 C 286 0.00 1311 reject_low 312 ALIGNMENT 0 Y12-20j09.q1k chr12 420 62 1076690 1076689 C 359 0.00 1311 reject_low 34 ALIGNMENT 179 Y12-20j09.q1k chr05 349 657 1614 1920 F 309 88.35 1311 reject_low 29 ALIGNMENT 0 Y12-20j09.q1k chr02 62 456 1486 1485 F 395 0.00 1311 reject_low 180 ALIGNMENT 137 Y12-20j09.q1k chr12 695 421 1076417 1076689 C 275 85.45 1311 reject_low 34 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1076654 1076653 C 287 0.00 1311 reject_low 23 ALIGNMENT 33 Y12-20j09.q1k chr16 348 413 1842 1907 F 66 84.85 1311 reject_low 311 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 2026 2025 F 287 0.00 1311 reject_low 99 ALIGNMENT 205 Y12-20j09.q1k chr13 349 695 1703 2047 F 347 88.47 1311 reject_low 84 ALIGNMENT 0 Y12-20j09.q1k chr16 62 384 1483 1482 F 323 0.00 1311 reject_low 106 ALIGNMENT 32 Y12-20j09.p1k chr12 17 57 1065729 1065771 F 41 95.12 1348 accept_tel 0 reject_low 22,23,27,28,31,34,35,36,38,43,45,51,52,53,55,58,63,66,67,69,72,73,75,323,324,325,326,327,328 ALIGNMENT 64 Y12-20j09.q1k chr06 360 651 976 1265 F 292 76.37 1311 reject_low 247 ALIGNMENT 111 Y12-20j09.q1k chr02 360 605 2145 2389 F 246 84.15 1311 reject_low 195 ALIGNMENT 43 Y12-20j09.q1k chr05 427 360 574915 574982 C 68 89.71 1311 reject_low 70 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1650 1649 F 287 0.00 1311 reject_low 39 ALIGNMENT 0 Y12-20j09.q1k chr12 62 359 2126 2125 F 298 0.00 1311 reject_low 330,334 ALIGNMENT 64 Y12-20j09.q1k chr16 521 348 945962 946135 C 174 81.03 1311 reject_low 252 ALIGNMENT 137 Y12-20j09.q1k chr10 349 609 1849 2108 F 261 86.59 1311 reject_low 165 ALIGNMENT 556 Y12-20j09.q1k chr12 5 724 1339 2056 F 720 93.06 1311 reject_low 11 ALIGNMENT 32 Y12-20j09.p1k chr05 17 57 570926 570968 F 41 95.12 1348 reject_low 18,21,25,30,32,33,37,40,48,49,54,60,62,64,65,70,71 ALIGNMENT 0 Y12-20j09.q1k chr02 62 565 1486 1485 F 504 0.00 1311 reject_low 277 ALIGNMENT 102 Y12-20j09.q1k chr05 457 657 1470 1668 F 201 86.07 1311 reject_low 47 ALIGNMENT 0 Y12-20j09.q1k chr12 62 347 7577 7576 F 286 0.00 1311 reject_low 248 ALIGNMENT 0 Y12-20j09.q1k chr16 536 580 1885 1884 F 45 0.00 1311 reject_low 236 ALIGNMENT 44 Y12-20j09.q1k chr15 657 566 1089563 1089653 C 92 84.78 1311 reject_low 283 ALIGNMENT 101 Y12-20j09.q1k chr09 493 637 1686 1829 F 145 92.41 1311 reject_low 198 ALIGNMENT 109 Y12-20j09.q1k chr12 630 352 1069638 1069915 C 279 82.08 1311 reject_low 45 ALIGNMENT 0 Y12-20j09.q1k chr08 62 420 1651 1650 F 359 0.00 1311 reject_low 187 ALIGNMENT 114 Y12-20j09.q1k chr04 637 352 1530093 1530377 C 286 82.17 1311 reject_low 189 ALIGNMENT 834 Y12-20j09.p1k chr16 17 1030 943120 944166 F 1014 95.07 1348 reject_low 9 ALIGNMENT 0 Y12-20j09.q1k chr02 62 384 1486 1485 F 323 0.00 1311 reject_low 129 ALIGNMENT 0 Y12-20j09.q1k chr04 420 62 1530489 1530488 C 359 0.00 1311 reject_low 137 ALIGNMENT 0 Y12-20j09.q1k chr05 456 62 575318 575317 C 395 0.00 1311 reject_low 30 ALIGNMENT 0 Y12-20j09.q1k chr12 424 425 1070023 1076289 C 0 0.00 1311 reject_low 324 ALIGNMENT 86 Y12-20j09.q1k chr13 493 724 1667 1896 F 232 80.60 1311 reject_low 174 ALIGNMENT 97 Y12-20j09.q1k chr12 352 605 7473 7725 F 254 81.89 1311 reject_low 212 ALIGNMENT 117 Y12-20j09.q1k chr12 352 637 7437 7721 F 286 82.52 1311 reject_low 181 ALIGNMENT 44 Y12-20j09.q1k chr14 566 657 1574 1664 F 92 84.78 1311 reject_low 282 ALIGNMENT 0 Y12-20j09.q1k chr05 347 62 574959 574958 C 286 0.00 1311 reject_low 71 ALIGNMENT 90 Y12-20j09.q1k chr07 594 352 1089006 1089247 C 243 81.48 1311 reject_low 224 ALIGNMENT 114 Y12-20j09.q1k chr12 637 352 1076294 1076578 C 286 82.17 1311 reject_low 43 ALIGNMENT 529 Y12-20j09.q1k chr12 724 5 1076316 1077033 C 720 91.81 1311 reject_low 7 ALIGNMENT 152 Y12-20j09.q1k chr14 385 724 1574 1911 F 340 83.24 1311 reject_low 105 ALIGNMENT 122 Y12-20j09.q1k chr16 637 349 945991 946278 C 289 83.04 1311 reject_low 178 ALIGNMENT 120 Y12-20j09.q1k chr12 457 724 7326 7591 F 268 83.21 1311|4,0 reject_low 329 ALIGNMENT 157 Y12-20j09.q1k chr02 360 657 2073 2368 F 298 86.58 1311 reject_low 130 ALIGNMENT 38 Y12-20j09.q1k chr06 638 724 892 978 F 87 81.61 1311 reject_low 227 ALIGNMENT 135 Y12-20j09.q1k chr09 457 724 1686 1951 F 268 85.07 1311 reject_low 113 ALIGNMENT 0 Y12-20j09.q1k chr08 351 62 560695 560694 C 290 0.00 1311 reject_low 197 ALIGNMENT 110 Y12-20j09.q1k chr08 695 457 560605 560841 C 239 84.10 1311 reject_low 167 ALIGNMENT 0 Y12-20j09.q1k chr04 456 62 1530489 1530488 C 395 0.00 1311 reject_low 120 ALIGNMENT 0 Y12-20j09.q1k chr15 348 62 1089474 1089473 C 287 0.00 1311 reject_low 218 ALIGNMENT 0 Y12-20j09.q1k chr05 351 62 575207 575206 C 290 0.00 1311 reject_low 40 ALIGNMENT 43 Y12-20j09.q1k chr14 360 427 1909 1976 F 68 89.71 1311 reject_low 296 ALIGNMENT 115 Y12-20j09.q1k chr16 695 493 946294 946494 C 203 87.68 1311 reject_low 157 ALIGNMENT 120 Y12-20j09.q1k chr12 724 457 1069761 1070026 C 268 83.21 1311|0,4 reject_low 323 ALIGNMENT 99 Y12-20j09.q1k chr02 421 631 1486 1695 F 211 84.83 1311 reject_low 203 ALIGNMENT 140 Y12-20j09.q1k chr02 348 695 1881 2226 F 348 82.18 1311 reject_low 131 ALIGNMENT 73 Y12-20j09.q1k chr06 457 657 893 1091 F 201 81.09 1311 reject_low 241 ALIGNMENT 0 Y12-20j09.q1k chr16 420 62 946495 946494 C 359 0.00 1311 reject_low 164 ALIGNMENT 0 Y12-20j09.q1k chr08 359 62 560615 560614 C 298 0.00 1311 reject_low 229 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946387 946386 C 287 0.00 1311 reject_low 95 ALIGNMENT 529 Y12-20j09.q1k chr15 724 5 1089280 1089997 C 720 91.81 1311 reject_low 8 ALIGNMENT 941 Y12-20j09.p1k chr09 1230 17 5151 6395 C 1214 93.74 1348 reject_low 1 ALIGNMENT 0 Y12-20j09.q1k chr16 359 62 946052 946051 C 298 0.00 1311 reject_low 299 ALIGNMENT 87 Y12-20j09.q1k chr12 594 352 1069638 1069879 C 243 81.07 1311 reject_low 53 ALIGNMENT 0 Y12-20j09.q1k chr10 62 343 1880 1879 F 282 0.00 1311 reject_low 150 ALIGNMENT 43 Y12-20j09.q1k chr04 427 360 1530086 1530153 C 68 89.71 1311 reject_low 293 ALIGNMENT 98 Y12-20j09.q1k chr14 349 594 1754 1998 F 246 82.52 1311 reject_low 207 ALIGNMENT 0 Y12-20j09.q1k chr10 62 359 2004 2003 F 298 0.00 1311 reject_low 258 ALIGNMENT 0 Y12-20j09.q1k chr12 62 348 7614 7613 F 287 0.00 1311 reject_low 268 ALIGNMENT 0 Y12-20j09.q1k chr08 580 464 560440 560439 C 117 0.00 1311 reject_low 286 ALIGNMENT 35 Y12-20j09.q1k chr10 349 390 2065 2106 F 42 97.62 1311 reject_low 304 ALIGNMENT 55 Y12-20j09.q1k chr12 349 463 2079 2193 F 115 85.22 1311|0,3 reject_low 329,331 ALIGNMENT 0 Y12-20j09.q1k chr12 460 461 1070023 1076289 C 0 0.00 1311 reject_low 323 ALIGNMENT 0 Y12-20j09.q1k chr16 62 347 1734 1733 F 286 0.00 1311 reject_low 251 ALIGNMENT 0 Y12-20j09.q1k chr04 348 62 1530453 1530452 C 287 0.00 1311 reject_low 87 ALIGNMENT 44 Y12-20j09.q1k chr12 657 566 1069936 1070026 C 92 84.78 1311 reject_low 328 ALIGNMENT 0 Y12-20j09.q1k chr15 580 414 1089230 1089229 C 167 0.00 1311 reject_low 310 ALIGNMENT 0 Y12-20j09.q1k chr16 456 62 946495 946494 C 395 0.00 1311 reject_low 161 ALIGNMENT 52 Y12-20j09.q1k chr07 485 348 1089006 1089143 C 138 81.16 1311 reject_low 274 ALIGNMENT 0 Y12-20j09.q1k chr16 428 580 1885 1884 F 153 0.00 1311 reject_low 298 ALIGNMENT 68 Y12-20j09.q1k chr10 529 637 1669 1776 F 109 89.91 1311 reject_low 245 ALIGNMENT 532 Y12-20j09.q1k chr13 5 724 1323 2040 F 720 91.94 1311 reject_low 15 ALIGNMENT 34 Y12-20j09.q1k chr12 413 360 1069638 1069691 C 54 88.89 1311 reject_low 73 ALIGNMENT 44 Y12-20j09.q1k chr12 449 349 1069638 1069738 C 101 83.17 1311 reject_low 69 ALIGNMENT 0 Y12-20j09.q1k chr16 580 464 945985 945984 C 117 0.00 1311 reject_low 272 ALIGNMENT 0 Y12-20j09.q1k chr06 62 420 893 892 F 359 0.00 1311 reject_low 257 ALIGNMENT 0 Y12-20j09.q1k chr15 347 62 1089403 1089402 C 286 0.00 1311 reject_low 256 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1686 1685 F 287 0.00 1311 reject_low 44 ALIGNMENT 0 Y12-20j09.q1k chr07 384 62 1089395 1089394 C 323 0.00 1311 reject_low 102 ALIGNMENT 152 Y12-20j09.q1k chr02 349 724 1990 2363 F 376 81.91 1311 reject_low 108 ALIGNMENT 0 Y12-20j09.q1k chr06 62 565 893 892 F 504 0.00 1311 reject_low 202 ALIGNMENT 0 Y12-20j09.q1k chr05 347 62 575067 575066 C 286 0.00 1311 reject_low 60 ALIGNMENT 33 Y12-20j09.q1k chr13 348 413 2026 2091 F 66 84.85 1311 reject_low 308 ALIGNMENT 184 Y12-20j09.q1k chr10 349 657 1705 2011 F 309 89.00 1311 reject_low 116 ALIGNMENT 0 Y12-20j09.q1k chr16 351 62 946240 946239 C 290 0.00 1311 reject_low 216 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1506 1505 F 287 0.00 1311 reject_low 19 ALIGNMENT 0 Y12-20j09.q1k chr10 501 580 2108 2107 F 80 0.00 1311 reject_low 201 ALIGNMENT 0 Y12-20j09.q1k chr12 348 62 1069847 1069846 C 287 0.00 1311 reject_low 55 ALIGNMENT 84 Y12-20j09.q1k chr06 360 662 940 1240 F 303 78.22 1311 reject_low 226 ALIGNMENT 0 Y12-20j09.q1k chr15 384 62 1089654 1089653 C 323 0.00 1311 reject_low 110 ALIGNMENT 82 Y12-20j09.q1k chr06 493 695 893 1093 F 203 82.27 1311 reject_low 200 ALIGNMENT 25 Y12-20j09.q1k chr09 597 631 1681 1715 F 35 91.43 1311 reject_low 320 ALIGNMENT 0 Y12-20j09.q1k chr12 384 62 1076690 1076689 C 323 0.00 1311 reject_low 28 ALIGNMENT 0 Y12-20j09.p1k chr05 817 58 5896 5895 C 760 0.00 1348 reject_low 19,20,24,26,29,39,41,42,44,46,47,50,56,57,59,61,68,74 ALIGNMENT 0 Y12-20j09.q1k chr12 62 384 7326 7325 F 323 0.00 1311 reject_low 103 ALIGNMENT 137 Y12-20j09.q1k chr12 421 695 7326 7598 F 275 85.45 1311|4,0 reject_low 330 ALIGNMENT 205 Y12-20j09.q1k chr07 695 349 1089014 1089358 C 347 88.47 1311 reject_low 82 ALIGNMENT 120 Y12-20j09.q1k chr12 724 457 1076424 1076689 C 268 83.21 1311 reject_low 31 ALIGNMENT 0 Y12-20j09.q1k chr13 62 348 1739 1738 F 287 0.00 1311 reject_low 134 ALIGNMENT 0 Y12-20j09.q1k chr13 62 420 1667 1666 F 359 0.00 1311 reject_low 139 ALIGNMENT 117 Y12-20j09.q1k chr05 421 631 1470 1679 F 211 87.68 1311 reject_low 42 ALIGNMENT 0 Y12-20j09.q1k chr12 62 351 7437 7436 F 290 0.00 1311 reject_low 181 ALIGNMENT 0 Y12-20j09.q1k chr12 347 62 1076439 1076438 C 286 0.00 1311 reject_low 327 ALIGNMENT 56 Y12-20j09.q1k chr08 349 527 1759 1937 F 179 79.33 1311 reject_low 273 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 1705 1704 F 287 0.00 1311 reject_low 116 ALIGNMENT 97 Y12-20j09.q1k chr13 352 605 1814 2066 F 254 81.89 1311 reject_low 213 ALIGNMENT 0 Y12-20j09.q1k chr12 580 414 1076266 1076265 C 167 0.00 1311 reject_low 72 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1758 1757 F 287 0.00 1311 reject_low 50 ALIGNMENT 98 Y12-20j09.q1k chr05 594 349 574893 575137 C 246 82.52 1311 reject_low 48 ALIGNMENT 0 Y12-20j09.q1k chr16 62 347 1842 1841 F 286 0.00 1311 reject_low 311 ALIGNMENT 0 Y12-20j09.q1k chr10 62 348 2065 2064 F 287 0.00 1311 reject_low 304 ALIGNMENT 0 Y12-20j09.q1k chr06 62 359 940 939 F 298 0.00 1311 reject_low 226 ALIGNMENT 0 Y12-20j09.q1k chr15 359 62 1089427 1089426 C 298 0.00 1311 reject_low 240 ALIGNMENT 0 Y12-20j09.q1k chr12 414 580 2215 2214 F 167 0.00 1311 reject_low 306 ALIGNMENT 0 Y12-20j09.q1k chr07 348 62 1089323 1089322 C 287 0.00 1311 reject_low 132 ALIGNMENT 0 Y12-20j09.q1k chr09 62 348 1974 1973 F 287 0.00 1311 reject_low 225 ALIGNMENT 0 Y12-20j09.q1k chr02 62 420 1486 1485 F 359 0.00 1311 reject_low 203 ALIGNMENT 68 Y12-20j09.q1k chr09 529 637 1686 1793 F 109 89.91 1311 reject_low 244 ALIGNMENT 805 Y12-20j09.p1k chr08 17 1030 557570 558619 F 1014 94.18 1348 reject_low 12 ALIGNMENT 529 Y12-20j09.q1k chr12 724 5 1069653 1070370 C 720 91.81 1311 accept_tel 0 ALIGNMENT 0 Y12-20j09.q1k chr08 351 62 560731 560730 C 290 0.00 1311 reject_low 169 ALIGNMENT 887 Y12-20j09.p1k chr05 1230 95 4766 5881 C 1136 94.45 1348 reject_low 17 ALIGNMENT 0 Y12-20j09.q1k chr12 580 522 1069639 1069638 C 59 0.00 1311 reject_low 58 ALIGNMENT 44 Y12-20j09.q1k chr08 657 566 560751 560841 C 92 84.78 1311 reject_low 280 ALIGNMENT 0 Y12-20j09.p1k chr05 58 817 570968 570967 F 760 0.00 1348 reject_low 21,25,30,32,33,37,40,48,49,54,60,62,64,65,70,71 ALIGNMENT 140 Y12-20j09.q1k chr08 493 724 1651 1880 F 232 88.36 1311 reject_low 96 ALIGNMENT 152 Y12-20j09.q1k chr07 724 385 1089057 1089394 C 340 83.24 1311 reject_low 102 ALIGNMENT 155 Y12-20j09.q1k chr12 349 657 7398 7704 F 309 85.76 1311 reject_low 133 ALIGNMENT 98 Y12-20j09.q1k chr12 349 594 1971 2215 F 246 82.52 1311 reject_low 204 ALIGNMENT 149 Y12-20j09.q1k chr09 349 637 1794 2081 F 289 86.16 1311 reject_low 155 ALIGNMENT 0 Y12-20j09.q1k chr12 359 62 1076355 1076354 C 298 0.00 1311 reject_low 324,328 ALIGNMENT 0 Y12-20j09.q1k chr12 464 580 7728 7727 F 117 0.00 1311 reject_low 268 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 2242 2241 F 287 0.00 1311 reject_low 253 ALIGNMENT 152 Y12-20j09.q1k chr12 385 724 7326 7663 F 340 83.24 1311 reject_low 103 ALIGNMENT 25 Y12-20j09.q1k chr10 597 631 1664 1698 F 35 91.43 1311 reject_low 321 ALIGNMENT 0 Y12-20j09.q1k chr16 62 348 1771 1770 F 287 0.00 1311 reject_low 271 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1578 1577 F 287 0.00 1311 reject_low 24 ALIGNMENT 86 Y12-20j09.q1k chr12 724 493 1069797 1070026 C 232 80.60 1311 reject_low 325 ALIGNMENT 136 Y12-20j09.q1k chr16 637 421 946279 946494 C 217 89.86 1311 reject_low 164 ALIGNMENT 0 Y12-20j09.q1k chr12 492 62 1076690 1076689 C 431 0.00 1311 reject_low 38 ALIGNMENT 0 Y12-20j09.q1k chr12 62 347 2150 2149 F 286 0.00 1311 reject_low 306 ALIGNMENT 0 Y12-20j09.q1k chr04 580 536 1530087 1530086 C 45 0.00 1311 reject_low 239 ALIGNMENT 0 Y12-20j09.q1k chr04 359 62 1530262 1530261 C 298 0.00 1311 reject_low 239 ALIGNMENT 0 Y12-20j09.q1k chr13 62 359 2002 2001 F 298 0.00 1311 reject_low 295 ALIGNMENT 0 Y12-20j09.q1k chr12 62 565 1683 1682 F 504 0.00 1311 reject_low 288 ALIGNMENT 0 Y12-20j09.q1k chr12 461 460 2191 7329 F 0 0.00 1311 reject_low 329 ALIGNMENT 0 Y12-20j09.q1k chr06 62 456 893 892 F 395 0.00 1311 reject_low 241 ALIGNMENT 0 Y12-20j09.q1k chr05 538 580 2054 2053 F 43 0.00 1311 reject_low 68 ALIGNMENT 0 Y12-20j09.q1k chr05 528 62 575318 575317 C 467 0.00 1311 reject_low 62 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946099 946098 C 287 0.00 1311 reject_low 272 ALIGNMENT 187 Y12-20j09.q1k chr12 349 695 1827 2171 F 347 86.74 1311 reject_low 94 ALIGNMENT 117 Y12-20j09.q1k chr13 352 637 1778 2062 F 286 82.52 1311 reject_low 182 ALIGNMENT 0 Y12-20j09.q1k chr10 465 580 2108 2107 F 116 0.00 1311 reject_low 258 ALIGNMENT 0 Y12-20j09.q1k chr12 428 565 2194 7325 F 138 0.00 1311 reject_low 334 ALIGNMENT 0 Y12-20j09.q1k chr15 359 62 1089319 1089318 C 298 0.00 1311 reject_low 297 ALIGNMENT 83 Y12-20j09.q1k chr12 535 360 1076287 1076462 C 176 84.66 1311|3,0 reject_low 326 ALIGNMENT 0 Y12-20j09.q1k chr15 580 464 1089252 1089251 C 117 0.00 1311 reject_low 276 ALIGNMENT 0 Y12-20j09.q1k chr09 62 420 1686 1685 F 359 0.00 1311 reject_low 89 ALIGNMENT 91 Y12-20j09.q1k chr05 349 651 1758 2058 F 303 79.21 1311 reject_low 50 ALIGNMENT 205 Y12-20j09.q1k chr14 349 695 1610 1954 F 347 88.47 1311 reject_low 85 ALIGNMENT 0 Y12-20j09.q1k chr16 348 62 946423 946422 C 287 0.00 1311 reject_low 80 ALIGNMENT 137 Y12-20j09.q1k chr14 421 695 1574 1846 F 275 85.45 1311 reject_low 140 ALIGNMENT 0 Y12-20j09.q1k chr12 414 580 7750 7749 F 167 0.00 1311 reject_low 307 ALIGNMENT 0 Y12-20j09.q1k chr02 62 351 1597 1596 F 290 0.00 1311 reject_low 98 ALIGNMENT 0 Y12-20j09.q1k chr16 62 351 1594 1593 F 290 0.00 1311 reject_low 184 ALIGNMENT 529 Y12-20j09.q1k chr07 724 5 1089021 1089738 C 720 91.81 1311 reject_low 4 ALIGNMENT 0 Y12-20j09.q1k chr08 359 62 560507 560506 C 298 0.00 1311 reject_low 315 ALIGNMENT 0 Y12-20j09.q1k chr13 414 580 2091 2090 F 167 0.00 1311 reject_low 308 ALIGNMENT 0 Y12-20j09.q1k chr05 62 347 1901 1900 F 286 0.00 1311 reject_low 74 ALIGNMENT 0 Y12-20j09.q1k chr16 62 528 1483 1482 F 467 0.00 1311 reject_low 266 ALIGNMENT 117 Y12-20j09.q1k chr16 352 637 1594 1878 F 286 82.52 1311 reject_low 184 ALIGNMENT 88 Y12-20j09.q1k chr09 360 507 1949 2096 F 148 88.51 1311 reject_low 232 ALIGNMENT 0 Y12-20j09.q1k chr12 347 62 1069668 1069667 C 286 0.00 1311 reject_low 75 ALIGNMENT 0 Y12-20j09.q1k chr04 359 62 1530154 1530153 C 298 0.00 1311 reject_low 293 ALIGNMENT 202 Y12-20j09.q1k chr12 695 349 1069646 1069990 C 347 88.18 1311 reject_low 22 ALIGNMENT 0 Y12-20j09.q1k chr05 62 348 1722 1721 F 287 0.00 1311 reject_low 46 ALIGNMENT 86 Y12-20j09.q1k chr07 558 349 1089006 1089214 C 210 82.86 1311 reject_low 231 ALIGNMENT 75 Y12-20j09.q1k chr08 349 535 1723 1909 F 187 82.35 1311 reject_low 242 ALIGNMENT 0 Y12-20j09.q1k chr02 62 347 1881 1880 F 286 0.00 1311 reject_low 131 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 1630 1629 F 287 0.00 1311 reject_low 127 ALIGNMENT 49 Y12-20j09.q1k chr12 485 348 1069638 1069775 C 138 80.43 1311 reject_low 67 ALIGNMENT 941 Y12-20j09.p1k chr10 1230 17 5134 6378 C 1214 93.74 1348 reject_low 2 ALIGNMENT 93 Y12-20j09.q1k chr08 349 595 1687 1932 F 247 81.78 1311 reject_low 222 ALIGNMENT 902 Y12-20j09.p1k chr14 1230 17 4762 6006 C 1214 92.59 1348 reject_low 3 ALIGNMENT 37 Y12-20j09.q1k chr08 427 360 560439 560506 C 68 86.76 1311 reject_low 315 ALIGNMENT 0 Y12-20j09.q1k chr07 580 522 1089007 1089006 C 59 0.00 1311 reject_low 246 ALIGNMENT 0 Y12-20j09.q1k chr05 62 565 1470 1469 F 504 0.00 1311 reject_low 57 ALIGNMENT 159 Y12-20j09.q1k chr02 352 724 1597 1967 F 373 82.57 1311 reject_low 98 ALIGNMENT 73 Y12-20j09.q1k chr16 724 529 946301 946494 C 196 80.61 1311 reject_low 186 ALIGNMENT 0 Y12-20j09.q1k chr10 62 384 1669 1668 F 323 0.00 1311 reject_low 77 ALIGNMENT 0 Y12-20j09.q1k chr02 414 580 2414 2413 F 167 0.00 1311 reject_low 318 ALIGNMENT 0 Y12-20j09.q1k chr16 62 456 1483 1482 F 395 0.00 1311 reject_low 125 ALIGNMENT 550 Y12-20j09.q1k chr02 2 724 1139 1859 F 723 92.67 1311 reject_low 10 ALIGNMENT 115 Y12-20j09.q1k chr12 493 695 1683 1883 F 203 87.68 1311 reject_low 156 ALIGNMENT 0 Y12-20j09.q1k chr08 536 580 1909 1908 F 45 0.00 1311 reject_low 242 ALIGNMENT 0 Y12-20j09.q1k chr10 62 528 1669 1668 F 467 0.00 1311 reject_low 245 ALIGNMENT 0 Y12-20j09.q1k chr14 62 528 1574 1573 F 467 0.00 1311 reject_low 264 ALIGNMENT 0 Y12-20j09.q1k chr02 62 348 1918 1917 F 287 0.00 1311 reject_low 153 ALIGNMENT 86 Y12-20j09.q1k chr12 724 493 1076460 1076689 C 232 80.60 1311 reject_low 38 ALIGNMENT 44 Y12-20j09.q1k chr16 566 657 1483 1573 F 92 84.78 1311 reject_low 284 ALIGNMENT 20 Y12-20j09.q1k chr07 377 348 1089006 1089035 C 30 90.00 1311 reject_low 322 ALIGNMENT 574 Y12-20j11.q1k chr12 30 922 392217 393117 F 893 89.59 1390 accept 0 ALIGNMENT 1022 Y12-20j13.p1k chr14 21 1313 445222 446509 F 1293 94.43 1313 accept 0 ALIGNMENT 1005 Y12-20j13.q1k chr14 1178 35 448169 449325 C 1144 96.85 1398 accept 0 ALIGNMENT 979 Y12-20j14.p1k chr12 1131 14 464297 465399 C 1118 97.23 1342 accept 1 ALIGNMENT 0 Y12-20j14.q1k chr12 579 840 490543 490542 F 262 0.00 1444 reject_low 2 ALIGNMENT 535 Y12-20j14.q1k chr12 36 578 490001 490543 F 543 99.63 1444 reject_low 2 ALIGNMENT 979 Y12-20j14.p1k chr12 1131 14 455160 456262 C 1118 97.23 1342 accept 0 ALIGNMENT 1079 Y12-20j14.q1k chr12 36 1263 452033 453274 F 1228 96.50 1444 accept 0 ALIGNMENT 1079 Y12-20j14.q1k chr12 36 1263 461170 462411 F 1228 96.50 1444 accept 1 ALIGNMENT 427 Y12-20j15.p1k chr02 59 705 786082 786723 F 647 90.26 1579 accept 0 ALIGNMENT 892 Y12-20j15.q1k chr02 1089 27 791015 792081 C 1063 95.86 1430 accept 0 ALIGNMENT 809 Y12-20j16.q1k chr11 25 1009 214912 215896 F 985 95.53 1409 accept 0 ALIGNMENT 423 Y12-20j16.p1k chr11 667 115 219891 220439 C 553 93.31 1596 accept 0 ALIGNMENT 30 Y12-20j16.p1k chr11 159 115 220449 220493 C 45 91.11 1596 reject_low 1 ALIGNMENT 996 Y12-20j17.p1k chr12 1233 16 188385 189595 C 1218 95.98 1335 accept 0 ALIGNMENT 581 Y12-20j17.q1k chr12 4 756 184791 185534 F 753 94.82 1339 accept 0 ALIGNMENT 795 Y12-20j18.q1k chr12 978 34 327275 328218 C 945 95.87 1397 accept 0 ALIGNMENT 422 Y12-20j19.p1k chr16 59 589 532560 533088 F 531 94.73 1389 accept 0 ALIGNMENT 815 Y12-20j19.q1k chr16 1017 29 536881 537870 C 989 95.85 1457 accept 0 ALIGNMENT 762 Y12-20j20.p1k chr03 186 1283 182663 183752 F 1098 91.71 1313 accept 0 ALIGNMENT 613 Y12-20j20.q1k chr03 752 1 187227 187975 C 752 96.01 1339 accept 0 ALIGNMENT 1008 Y12-20j21.p1k chr06 25 1172 171016 172170 F 1148 97.30 1268 accept 0 ALIGNMENT 687 Y12-20j21.q1k chr06 915 7 174855 175747 C 909 93.51 1290 accept 0 ALIGNMENT 148 Y12-20j21.q1k chr12 89 479 661436 661826 F 391 79.80 1290 reject_low 1 ALIGNMENT 0 Y12-20j21.q1k chr12 62 88 661436 661435 F 27 0.00 1290 reject_low 1 ALIGNMENT 938 Y12-20j22.p1k chr13 1178 21 367399 368564 C 1158 94.99 1260 accept 0 ALIGNMENT 1030 Y12-20j22.q1k chr13 32 1237 364893 366100 F 1206 96.02 1397 accept 0 ALIGNMENT 0 Y12-20j23.p1k chr13 159 62 795085 795084 C 98 0.00 1252 reject_low 2 ALIGNMENT 0 Y12-20j23.p1k chr07 795 206 467705 467704 C 590 0.00 1252 reject_low 1 ALIGNMENT 891 Y12-20j23.p1k chr13 1233 17 408549 409767 C 1217 93.02 1252 accept 0 ALIGNMENT 20 Y12-20j23.p1k chr13 207 160 795037 795084 C 48 93.75 1252 reject_low 2 ALIGNMENT 0 Y12-20j23.p1k chr07 159 62 467750 467749 C 98 0.00 1252 reject_low 1 ALIGNMENT 0 Y12-20j23.p1k chr13 795 208 795038 795037 C 588 0.00 1252 reject_low 2 ALIGNMENT 1005 Y12-20j23.q1k chr13 38 1176 405678 406834 F 1139 97.28 1348 accept 0 ALIGNMENT 21 Y12-20j23.p1k chr07 205 160 467704 467749 C 46 95.65 1252 reject_low 1 ALIGNMENT 542 Y12-20j24.q1k chr04 28 785 1203146 1203896 F 758 91.69 1443 accept_trans 0 ALIGNMENT 928 Y12-20j24.p1k chr04 1042 22 1213816 1214832 C 1021 97.94 1276 accept_trans 0 ALIGNMENT 1031 Y12-20k01.p1k chr05 16 1258 295775 297018 F 1243 95.17 1266 accept 0 ALIGNMENT 182 Y12-20k01.q1k chr09 116 601 238506 238989 F 486 79.84 1638 reject_low 1 ALIGNMENT 560 Y12-20k01.q1k chr05 805 42 300465 301215 C 764 92.80 1638 accept 0 ALIGNMENT 986 Y12-20k02.p1k chr07 1214 24 193168 194361 C 1191 96.05 1256 accept 0 ALIGNMENT 1011 Y12-20k02.q1k chr07 27 1205 189609 190794 F 1179 96.18 1380 accept 0 ALIGNMENT 1022 Y12-20k03.q1k chr12 1165 34 454140 455288 C 1132 97.53 1358 reject_low 1 ALIGNMENT 1022 Y12-20k03.q1k chr12 1165 34 463277 464425 C 1132 97.53 1358 accept 0 ALIGNMENT 307 Y12-20k03.p1k chr12 740 1235 451419 451936 F 496 88.91 1292 reject_low 1 ALIGNMENT 0 Y12-20k03.p1k chr12 62 739 451419 451418 F 678 0.00 1292 reject_low 1 ALIGNMENT 855 Y12-20k03.p1k chr12 20 1235 459811 461073 F 1216 91.86 1292 accept 0 ALIGNMENT 1019 Y12-20k04.q1k chr12 1178 33 463264 464425 C 1146 97.29 1373 accept 0 ALIGNMENT 310 Y12-20k04.p1k chr12 739 1248 451419 451951 F 510 88.63 1278 reject_low 1 ALIGNMENT 0 Y12-20k04.p1k chr12 62 738 451419 451418 F 677 0.00 1278 reject_low 1 ALIGNMENT 1019 Y12-20k04.q1k chr12 1178 33 454127 455288 C 1146 97.29 1373 reject_low 1 ALIGNMENT 859 Y12-20k04.p1k chr12 19 1248 459811 461088 F 1230 91.71 1278 accept 0 ALIGNMENT 0 Y12-20k05.q1k chr12 62 570 489754 489753 F 509 0.00 1367 reject_low 2 ALIGNMENT 724 Y12-20k05.q1k chr12 201 1053 451419 452269 F 853 96.13 1367 reject_low 1 ALIGNMENT 866 Y12-20k05.q1k chr12 4 1053 460345 461406 F 1050 95.43 1367 accept 0 ALIGNMENT 1007 Y12-20k05.p1k chr12 1280 18 462891 464155 C 1263 94.22 1299 accept 0 ALIGNMENT 0 Y12-20k05.q1k chr12 62 200 451419 451418 F 139 0.00 1367 reject_low 1 ALIGNMENT 1002 Y12-20k05.p1k chr12 1203 18 453835 455018 C 1186 95.78 1299 reject_low 1 ALIGNMENT 390 Y12-20k05.q1k chr12 571 1053 489754 490237 F 483 94.41 1367 reject_low 2 ALIGNMENT 741 Y12-20k07.p1k chr14 834 10 713801 714626 C 825 97.70 1447 accept_chi 1 ALIGNMENT 863 Y12-20k07.q1k chr13 10 1006 613116 614105 F 997 96.79 1457 accept_chi 0 ALIGNMENT 780 Y12-20k08.q1k chr15 3 963 369054 370006 F 961 95.73 1438 accept 0 ALIGNMENT 587 Y12-20k08.p1k chr15 727 34 373125 373817 C 694 96.54 1454 accept 0 ALIGNMENT 976 Y12-20k09.p1k chr13 1153 15 375291 376445 C 1139 96.49 1252 ambiguous_trans 14 ALIGNMENT 1037 Y12-20k09.q1k chr10 1246 27 60102 61315 C 1220 95.82 1476 accept 0 ALIGNMENT 1003 Y12-20k09.p1k chr02 15 1145 223212 224357 F 1131 97.44 1252 ambiguous_trans 1 ALIGNMENT 978 Y12-20k09.p1k chr12 1149 15 217680 218830 C 1135 96.65 1252 ambiguous_trans_ua 16 ALIGNMENT 976 Y12-20k09.p1k chr13 15 1153 186340 187494 F 1139 96.49 1252 ambiguous_trans 13 ALIGNMENT 976 Y12-20k09.p1k chr15 15 1153 119878 121032 F 1139 96.49 1252 ambiguous_trans 15 ALIGNMENT 973 Y12-20k09.p1k chr13 15 1153 198507 199661 F 1139 96.40 1252 ambiguous_trans 21 ALIGNMENT 970 Y12-20k09.p1k chr16 15 1153 58627 59781 F 1139 96.31 1252 ambiguous_trans 22 ALIGNMENT 973 Y12-20k09.p1k chr07 1153 15 819987 821141 C 1139 96.40 1252 ambiguous_trans 20 ALIGNMENT 976 Y12-20k09.p1k chr04 1153 15 989310 990464 C 1139 96.49 1252 ambiguous_trans 7 ALIGNMENT 976 Y12-20k09.p1k chr04 15 1153 1097938 1099092 F 1139 96.49 1252 ambiguous_trans 8 ALIGNMENT 976 Y12-20k09.p1k chr04 1153 15 648088 649242 C 1139 96.49 1252 ambiguous_trans 6 ALIGNMENT 977 Y12-20k09.p1k chr13 1149 15 359597 360747 C 1135 96.56 1252 ambiguous_trans 19 ALIGNMENT 976 Y12-20k09.p1k chr05 1153 15 445987 447141 C 1139 96.49 1252 ambiguous_trans 9 ALIGNMENT 976 Y12-20k09.p1k chr10 15 1153 480137 481291 F 1139 96.49 1252 ambiguous_trans 12 ALIGNMENT 976 Y12-20k09.p1k chr07 1153 15 564438 565592 C 1139 96.49 1252 ambiguous_trans 10 ALIGNMENT 969 Y12-20k09.p1k chr14 1149 15 99203 100353 C 1135 96.39 1252 ambiguous_trans 24 ALIGNMENT 997 Y12-20k09.p1k chr02 15 1145 261746 262891 F 1131 97.26 1252 ambiguous_trans 2 ALIGNMENT 976 Y12-20k09.p1k chr10 15 1153 474553 475707 F 1139 96.49 1252 ambiguous_trans 11 ALIGNMENT 979 Y12-20k09.p1k chr16 1153 15 807232 808386 C 1139 96.58 1252 ambiguous_trans 4 ALIGNMENT 946 Y12-20k09.p1k chr16 1153 15 853220 854374 C 1139 95.61 1252 ambiguous_trans 25 ALIGNMENT 977 Y12-20k09.p1k chr08 1149 15 546203 547353 C 1135 96.56 1252 ambiguous_trans 18 ALIGNMENT 977 Y12-20k09.p1k chr05 1149 15 495090 496240 C 1135 96.56 1252 ambiguous_trans 17 ALIGNMENT 996 Y12-20k09.p1k chr04 1149 15 880893 882043 C 1135 97.18 1252 ambiguous_trans 3 ALIGNMENT 969 Y12-20k09.p1k chr16 15 1153 846584 847741 F 1139 96.31 1252 ambiguous_trans 23 ALIGNMENT 976 Y12-20k09.p1k chr01 1153 15 162833 163987 C 1139 96.49 1252 ambiguous_trans 5 ALIGNMENT 247 Y12-20k11.p1k chr15 221 708 1037032 1037515 F 488 84.43 1488 accept 0 ALIGNMENT 1050 Y12-20k12.p1k chr14 1255 26 435011 436254 C 1230 96.10 1279 accept 0 ALIGNMENT 969 Y12-20k12.q1k chr14 27 1163 430331 431485 F 1137 96.57 1387 accept 0 ALIGNMENT 782 Y12-20k14.p1k chr12 938 36 818311 819219 C 903 96.79 1383 accept 0 ALIGNMENT 694 Y12-20k14.q1k chr12 38 857 815135 815951 F 820 96.46 1414 accept 0 ALIGNMENT 351 Y12-20k15.q1k chr03 29 474 268750 269207 F 446 93.27 1392 reject_low 1 ALIGNMENT 0 Y12-20k15.q1k chr03 475 834 269207 269206 F 360 0.00 1392 reject_low 1 ALIGNMENT 738 Y12-20k15.q1k chr03 199 1103 268605 269508 F 905 94.92 1392 accept 0 ALIGNMENT 0 Y12-20k15.q1k chr03 62 525 268605 268604 F 464 0.00 1392 reject_low 2 ALIGNMENT 0 Y12-20k15.q1k chr03 780 834 268858 268857 F 55 0.00 1392 reject_low 2 ALIGNMENT 0 Y12-20k15.q1k chr03 62 198 268605 268604 F 137 0.00 1392 accept 0 ALIGNMENT 0 Y12-20k15.q1k chr03 160 834 269207 269206 F 675 0.00 1392 reject_low 3 ALIGNMENT 98 Y12-20k15.q1k chr03 29 159 269077 269207 F 131 91.60 1392 reject_low 3 ALIGNMENT 957 Y12-20k15.p1k chr03 1280 19 272842 274107 C 1262 93.98 1301 accept 0 ALIGNMENT 227 Y12-20k15.q1k chr03 526 779 268605 268858 F 254 96.85 1392 reject_low 2 ALIGNMENT 788 Y12-20k16.p1k chr10 237 1267 228070 229111 F 1031 94.37 1304 accept 0 ALIGNMENT 963 Y12-20k16.q1k chr10 1111 30 230824 231912 C 1082 97.41 1402 accept 0 ALIGNMENT 661 Y12-20k17.p1k chr02 1 770 484797 485561 F 770 96.88 1222 accept 0 ALIGNMENT 796 Y12-20k17.q1k chr02 965 33 487676 488599 C 933 96.25 1441 accept 0 ALIGNMENT 842 Y12-20k18.q1k chr15 1 1032 644313 645342 F 1032 95.35 1375 accept 0 ALIGNMENT 0 Y12-20k18.p1k chr12 62 100 673126 673125 F 39 0.00 1269 reject_low 1 ALIGNMENT 0 Y12-20k18.p1k chr12 311 862 673335 673334 F 552 0.00 1269 reject_low 1 ALIGNMENT 131 Y12-20k18.p1k chr12 101 310 673126 673335 F 210 87.62 1269 reject_low 1 ALIGNMENT 978 Y12-20k18.p1k chr15 1125 21 647978 649094 C 1105 97.29 1269 accept 0 ALIGNMENT 597 Y12-20k19.q1k chr09 37 832 428024 428835 F 796 92.96 1548 accept 0 ALIGNMENT 28 Y12-20k19.p1k chr12 605 803 454802 454997 F 199 72.86 1375 reject_low 2 ALIGNMENT 367 Y12-20k19.p1k chr07 38 570 7773 8309 F 533 90.62 1375 reject_low 1 ALIGNMENT 0 Y12-20k19.p1k chr12 152 604 454802 454801 F 453 0.00 1375 reject_low 2 ALIGNMENT 372 Y12-20k19.p1k chr09 570 38 432268 432803 C 533 90.99 1375 accept 0 ALIGNMENT 1057 Y12-20k20.p1k chr12 1281 26 285191 286447 C 1256 95.94 1281 accept 0 ALIGNMENT 914 Y12-20k20.q1k chr12 35 1102 281818 282900 F 1068 96.44 1402 accept 0 ALIGNMENT 71 Y12-20k21.q1k chr12 632 760 451422 451550 F 129 85.27 1444 reject_low 2 ALIGNMENT 644 Y12-20k21.p1k chr09 1014 20 385325 386346 C 995 89.65 1283 accept_chi 0 ALIGNMENT 0 Y12-20k21.q1k chr12 212 631 451422 451421 F 420 0.00 1444 reject_low 2 ALIGNMENT 374 Y12-20k21.q1k chr12 46 760 459954 460687 F 715 86.15 1444 accept_chi 1 ALIGNMENT 933 Y12-20k23.q1k chr05 29 1202 490007 491197 F 1174 93.61 1338 accept 0 ALIGNMENT 942 Y12-20k23.p1k chr10 1241 21 197666 198873 C 1221 95.17 1257 ambiguous_trans 1 ALIGNMENT 948 Y12-20k23.p1k chr16 21 1215 441703 442884 F 1195 95.65 1257 ambiguous_trans 3 ALIGNMENT 948 Y12-20k23.p1k chr08 1215 21 85760 86941 C 1195 95.73 1257 ambiguous_trans 2 ALIGNMENT 0 Y12-20k24.q1k chr03 722 663 76850 76849 C 60 0.00 1334 reject_low 1 ALIGNMENT 119 Y12-20k24.q1k chr03 573 58 76938 77453 C 516 75.78 1334 reject_low 1 ALIGNMENT 0 Y12-20k24.q1k chr03 603 574 76908 76937 C 30 0.00 1334 reject_low 1 ALIGNMENT 922 Y12-20k24.q1k chr04 1157 12 1466779 1467928 C 1146 94.50 1334 accept 0 ALIGNMENT 784 Y12-20k24.p1k chr04 156 1043 1462244 1463121 F 888 97.97 1288 accept 0 ALIGNMENT 26 Y12-20k24.q1k chr03 662 604 76849 76907 C 59 83.05 1334 reject_low 1 ALIGNMENT 912 Y12-20l01.q1k chr16 1172 35 489548 490676 C 1138 94.99 1443 accept 0 ALIGNMENT 758 Y12-20l01.p1k chr16 2 984 485503 486474 F 983 95.02 1278 accept 0 ALIGNMENT 0 Y12-20l01.p1k chr07 682 178 479926 479925 C 505 0.00 1278 reject_low 1 ALIGNMENT 83 Y12-20l01.p1k chr07 177 56 479925 480046 C 122 90.16 1278 reject_low 1 ALIGNMENT 921 Y12-20l02.p1k chr13 1088 19 820342 821395 C 1070 96.54 1294 accept 0 ALIGNMENT 846 Y12-20l02.q1k chr13 35 1142 815375 816463 F 1108 94.86 1424 accept 0 ALIGNMENT 20 Y12-20l03.p1k chr12 759 728 11462 11493 C 32 93.75 1287 reject_low 18 ALIGNMENT 362 Y12-20l03.p1k chr04 717 76 288 954 C 642 88.47 1287 reject_low 21 ALIGNMENT 0 Y12-20l03.p1k chr08 724 724 556728 556718 F 1 0.00 1287 reject_low 22 ALIGNMENT 0 Y12-20l03.p1k chr03 723 724 508 497 C 0 0.00 1287 reject_low 16 ALIGNMENT 416 Y12-20l03.p1k chr10 651 31 7234 7864 C 621 90.98 1287 reject_low 6 ALIGNMENT 0 Y12-20l03.p1k chr09 755 652 7252 7251 C 104 0.00 1287 reject_low 5 ALIGNMENT 23 Y12-20l03.p1k chr03 759 724 472 507 C 36 94.44 1287 reject_low 16 ALIGNMENT 479 Y12-20l03.p1k chr04 18 720 1524498 1525213 F 703 91.61 1287 reject_low 2 ALIGNMENT 416 Y12-20l03.p1k chr09 651 31 7251 7881 C 621 90.98 1287 reject_low 5 ALIGNMENT 425 Y12-20l03.p1k chr05 18 723 569486 570208 F 706 89.24 1287 reject_low 3 ALIGNMENT 20 Y12-20l03.p1k chr04 759 728 259 290 C 32 93.75 1287 reject_low 21 ALIGNMENT 0 Y12-20l03.p1k chr10 755 652 7235 7234 C 104 0.00 1287 reject_low 6 ALIGNMENT 26 Y12-20l03.p1k chr10 725 779 745420 745472 F 55 89.09 1287 reject_low 14 ALIGNMENT 359 Y12-20l03.p1k chr02 76 717 812323 812989 F 642 88.16 1287 reject_low 9 ALIGNMENT 0 Y12-20l03.p1k chr14 718 755 783886 783885 F 38 0.00 1287 reject_low 8 ALIGNMENT 0 Y12-20l03.p1k chr04 721 755 1525213 1525212 F 35 0.00 1287 reject_low 2 ALIGNMENT 390 Y12-20l03.p1k chr10 76 723 744767 745428 F 648 89.51 1287 reject_low 14 ALIGNMENT 23 Y12-20l03.p1k chr16 770 725 6588 6633 C 46 89.13 1287 reject_low 19 ALIGNMENT 389 Y12-20l03.p1k chr12 717 18 11491 12195 C 700 87.71 1287 reject_low 18 ALIGNMENT 217 Y12-20l03.p1k chr08 779 1161 542557 542930 F 383 87.99 1287 accept 0 ALIGNMENT 316 Y12-20l03.p1k chr13 123 723 923535 924157 F 601 87.02 1287 reject_low 12 ALIGNMENT 359 Y12-20l03.p1k chr13 717 76 5728 6394 C 642 88.32 1287 reject_low 10 ALIGNMENT 0 Y12-20l03.p1k chr13 724 755 924157 924156 F 32 0.00 1287 reject_low 12 ALIGNMENT 405 Y12-20l03.p1k chr12 18 723 1064168 1064898 F 706 88.10 1287 reject_low 7 ALIGNMENT 0 Y12-20l03.p1k chr06 76 62 5581 5580 C 15 0.00 1287 reject_low 11 ALIGNMENT 390 Y12-20l03.p1k chr14 18 717 783168 783886 F 700 87.57 1287 reject_low 8 ALIGNMENT 435 Y12-20l03.p1k chr03 18 723 315669 316387 F 706 89.66 1287 reject_low 13 ALIGNMENT 0 Y12-20l03.p1k chr06 755 717 4921 4920 C 39 0.00 1287 reject_low 11 ALIGNMENT 23 Y12-20l03.p1k chr03 724 770 316378 316424 F 47 89.36 1287 reject_low 13 ALIGNMENT 0 Y12-20l03.p1k chr04 727 718 291 287 C 10 0.00 1287 reject_low 21 ALIGNMENT 0 Y12-20l03.p1k chr12 727 718 11494 11490 C 10 0.00 1287 reject_low 18 ALIGNMENT 0 Y12-20l03.p1k chr13 755 718 5729 5728 C 38 0.00 1287 reject_low 10 ALIGNMENT 0 Y12-20l03.p1k chr02 723 724 5995 5984 C 0 0.00 1287 reject_low 15 ALIGNMENT 370 Y12-20l03.p1k chr16 723 24 6625 7327 C 700 87.43 1287 reject_low 19 ALIGNMENT 26 Y12-20l03.p1k chr14 770 725 6786 6831 C 46 91.30 1287 reject_low 17 ALIGNMENT 0 Y12-20l03.p1k chr08 62 778 542557 542556 F 717 0.00 1287 accept 0 ALIGNMENT 368 Y12-20l03.p1k chr15 24 723 1083814 1084516 F 700 87.29 1287 reject_low 20 ALIGNMENT 0 Y12-20l03.p1k chr13 62 122 923535 923534 F 61 0.00 1287 reject_low 12 ALIGNMENT 261 Y12-20l03.p1k chr08 163 723 556141 556727 F 561 85.38 1287 reject_low 22 ALIGNMENT 395 Y12-20l03.p1k chr14 723 77 6823 7478 C 647 89.64 1287 reject_low 17 ALIGNMENT 0 Y12-20l03.p1k chr05 724 755 570208 570207 F 32 0.00 1287 reject_low 3 ALIGNMENT 425 Y12-20l03.p1k chr15 723 18 235 956 C 706 88.95 1287 reject_low 4 ALIGNMENT 0 Y12-20l03.p1k chr15 755 724 236 235 C 32 0.00 1287 reject_low 4 ALIGNMENT 0 Y12-20l03.p1k chr15 724 724 1084517 1084507 F 1 0.00 1287 reject_low 20 ALIGNMENT 88 Y12-20l03.p1k chr09 935 779 24307 24462 C 157 85.99 1287 reject_low 1 ALIGNMENT 318 Y12-20l03.p1k chr06 716 77 4920 5580 C 640 85.78 1287 reject_low 11 ALIGNMENT 0 Y12-20l03.p1k chr10 724 724 745429 745419 F 1 0.00 1287 reject_low 14 ALIGNMENT 24 Y12-20l03.p1k chr02 779 724 5941 5994 C 56 87.50 1287 reject_low 15 ALIGNMENT 23 Y12-20l03.p1k chr15 725 770 1084508 1084553 F 46 89.13 1287 reject_low 20 ALIGNMENT 0 Y12-20l03.p1k chr14 724 724 6832 6822 C 1 0.00 1287 reject_low 17 ALIGNMENT 0 Y12-20l03.p1k chr12 724 755 1064898 1064897 F 32 0.00 1287 reject_low 7 ALIGNMENT 0 Y12-20l03.p1k chr08 62 162 556141 556140 F 101 0.00 1287 reject_low 22 ALIGNMENT 0 Y12-20l03.p1k chr02 718 755 812989 812988 F 38 0.00 1287 reject_low 9 ALIGNMENT 23 Y12-20l03.p1k chr08 725 770 556719 556764 F 46 89.13 1287 reject_low 22 ALIGNMENT 0 Y12-20l03.p1k chr14 76 62 7479 7478 C 15 0.00 1287 reject_low 17 ALIGNMENT 0 Y12-20l03.p1k chr03 724 723 316388 316377 F 0 0.00 1287 reject_low 13 ALIGNMENT 364 Y12-20l03.p1k chr02 723 18 5985 6717 C 706 86.26 1287 reject_low 15 ALIGNMENT 0 Y12-20l03.p1k chr16 724 724 6634 6624 C 1 0.00 1287 reject_low 19 ALIGNMENT 404 Y12-20l03.p1k chr03 723 47 498 1178 C 677 88.92 1287 reject_low 16 ALIGNMENT 0 Y12-20l03.p1k chr09 778 62 24463 24462 C 717 0.00 1287 reject_low 1 ALIGNMENT 806 Y12-20l04.q1k chr07 924 31 842847 843753 C 894 97.99 1313 accept 0 ALIGNMENT 769 Y12-20l04.p1k chr07 153 1087 838722 839641 F 935 96.04 1352 accept 0 ALIGNMENT 85 Y12-20l05.q1k chr09 737 638 248838 248938 C 100 96.00 1401 reject_low 1 ALIGNMENT 877 Y12-20l05.q1k chr16 1157 29 689127 690262 C 1129 94.51 1401 accept 0 ALIGNMENT 43 Y12-20l05.q1k chr03 691 636 227993 228048 C 56 94.64 1401 reject_low 3 ALIGNMENT 0 Y12-20l05.q1k chr03 635 62 228049 228048 C 574 0.00 1401 reject_low 3 ALIGNMENT 83 Y12-20l05.q1k chr05 635 728 288429 288522 F 94 96.81 1401 reject_low 2 ALIGNMENT 0 Y12-20l05.q1k chr03 691 692 227974 227992 C 0 0.00 1401 reject_low 3 ALIGNMENT 0 Y12-20l05.q1k chr05 62 634 288429 288428 F 573 0.00 1401 reject_low 2 ALIGNMENT 992 Y12-20l05.p1k chr16 18 1187 686634 687803 F 1170 96.24 1315 accept 0 ALIGNMENT 0 Y12-20l05.q1k chr05 729 779 288522 288521 F 51 0.00 1401 reject_low 2 ALIGNMENT 0 Y12-20l05.q1k chr09 779 738 248839 248838 C 42 0.00 1401 reject_low 1 ALIGNMENT 31 Y12-20l05.q1k chr03 728 692 227937 227973 C 37 94.59 1401 reject_low 3 ALIGNMENT 0 Y12-20l05.q1k chr03 779 729 227938 227937 C 51 0.00 1401 reject_low 3 ALIGNMENT 0 Y12-20l05.q1k chr09 637 62 248939 248938 C 576 0.00 1401 reject_low 1 ALIGNMENT 884 Y12-20l06.q1k chr04 1069 32 560451 561499 C 1038 97.50 1370 accept 0 ALIGNMENT 1086 Y12-20l06.p1k chr04 21 1287 556198 557460 F 1267 96.21 1299 accept 0 ALIGNMENT 22 Y12-20l08.q1k chr07 495 518 70166 70189 F 24 100.00 1386 reject_low 1 ALIGNMENT 880 Y12-20l08.q1k chr11 1060 4 560863 561923 C 1057 95.65 1386 accept 0 ALIGNMENT 0 Y12-20l08.q1k chr07 519 724 70189 70188 F 206 0.00 1386 reject_low 1 ALIGNMENT 561 Y12-20l08.p1k chr11 37 739 556257 556954 F 703 95.02 1373 accept 0 ALIGNMENT 0 Y12-20l08.q1k chr07 62 494 70166 70165 F 433 0.00 1386 reject_low 1 ALIGNMENT 0 Y12-20l09.q1k chr14 733 692 766639 766638 C 42 0.00 1368 reject_low 1 ALIGNMENT 1009 Y12-20l09.p1k chr04 15 1194 463715 464880 F 1180 96.36 1312 accept 0 ALIGNMENT 0 Y12-20l09.q1k chr14 189 62 767140 767139 C 128 0.00 1368 reject_low 1 ALIGNMENT 899 Y12-20l09.q1k chr04 1021 1 467219 468256 C 1021 97.45 1368 accept 0 ALIGNMENT 125 Y12-20l09.q1k chr14 691 190 766638 767139 C 502 75.90 1368 reject_low 1 ALIGNMENT 0 Y12-20l10.q1k chr04 305 550 1308665 1308664 F 246 0.00 1560 reject_low 1 ALIGNMENT 671 Y12-20l10.p1k chr04 841 16 1313228 1314044 C 826 96.00 1421 accept 0 ALIGNMENT 531 Y12-20l10.q1k chr04 96 1011 1308574 1309462 F 916 89.30 1560 accept 0 ALIGNMENT 40 Y12-20l10.q1k chr04 211 304 1308572 1308665 F 94 84.04 1560 reject_low 1 ALIGNMENT 909 Y12-20l12.q1k chr07 1098 29 871121 872205 C 1070 96.73 1402 accept 0 ALIGNMENT 968 Y12-20l12.p1k chr07 17 1267 868151 869391 F 1251 94.08 1296 accept 0 ALIGNMENT 52 Y12-20l13.q1k chr08 968 887 62756 62835 C 82 90.24 1391 reject_low 3 ALIGNMENT 56 Y12-20l13.q1k chr11 886 968 313034 313114 F 83 91.57 1391 reject_low 2 ALIGNMENT 849 Y12-20l13.q1k chr05 29 985 433669 434622 F 957 98.43 1391 accept 0 ALIGNMENT 0 Y12-20l13.q1k chr13 885 62 363147 363146 C 824 0.00 1391 reject_low 1 ALIGNMENT 59 Y12-20l13.q1k chr13 968 886 363066 363146 C 83 92.77 1391 reject_low 1 ALIGNMENT 0 Y12-20l13.q1k chr08 886 62 62836 62835 C 825 0.00 1391 reject_low 3 ALIGNMENT 1014 Y12-20l13.p1k chr05 1211 16 437358 438565 C 1196 96.32 1329 accept 0 ALIGNMENT 0 Y12-20l13.q1k chr11 62 885 313034 313033 F 824 0.00 1391 reject_low 2 ALIGNMENT 949 Y12-20l14.q1k chr13 1165 35 399826 400938 C 1131 96.82 1508 accept 0 ALIGNMENT 1024 Y12-20l14.p1k chr13 17 1212 395083 396267 F 1196 96.57 1348 accept 0 ALIGNMENT 1060 Y12-20l15.p1k chr03 1283 21 280052 281310 C 1263 96.04 1305 accept 0 ALIGNMENT 912 Y12-20l15.q1k chr03 7 1094 276635 277708 F 1088 96.60 1457 accept 0 ALIGNMENT 970 Y12-20l17.q1k chr13 1227 31 56807 57990 C 1197 95.66 1472 accept 0 ALIGNMENT 1063 Y12-20l17.p1k chr13 15 1247 52608 53843 F 1233 96.76 1322 accept 0 ALIGNMENT 943 Y12-20l18.p1k chr14 23 1100 719177 720243 F 1078 96.85 1312 accept 0 ALIGNMENT 925 Y12-20l18.q1k chr14 1120 7 722488 723620 C 1114 95.69 1382 accept 0 ALIGNMENT 933 Y12-20l19.q1k chr08 28 1058 282578 283616 F 1031 97.58 1390 accept 0 ALIGNMENT 1078 Y12-20l19.p1k chr08 1275 27 285566 286808 C 1249 96.40 1286 accept 0 ALIGNMENT 481 Y12-20l21.q1k chr04 127 1165 869800 870812 F 1039 84.50 1392 accept_chi 0 ALIGNMENT 427 Y12-20l21.p1k chr04 936 20 886182 887089 C 917 83.64 1255 accept_chi 1 ALIGNMENT 1023 Y12-20l22.p1k chr14 1217 13 543169 544373 C 1205 95.85 1227 accept 0 ALIGNMENT 964 Y12-20l22.q1k chr14 12 1155 539861 541007 F 1144 96.68 1345 accept 0 ALIGNMENT 919 Y12-20l23.p1k chr12 1159 18 457625 458758 C 1142 95.10 1250 reject_low 2 ALIGNMENT 925 Y12-20l23.p1k chr12 1197 18 466728 467895 C 1180 94.58 1250 accept 0,1 ALIGNMENT 834 Y12-20l23.q1k chr12 42 1079 463580 464594 F 1038 95.47 1470 accept 1 ALIGNMENT 834 Y12-20l23.q1k chr12 42 1079 454443 455457 F 1038 95.47 1470 accept 0 ALIGNMENT 941 Y12-20l24.p1k chr12 1113 26 695166 696249 C 1088 97.06 1252 accept 0 ALIGNMENT 951 Y12-20l24.q1k chr12 7 1284 690529 691782 F 1278 93.90 1377 accept 0 ALIGNMENT 904 Y12-20m02.q1k chr08 4 1092 308191 309284 F 1089 95.87 1329 accept 0 ALIGNMENT 812 Y12-20m02.p1k chr08 1270 170 311912 313002 C 1101 92.55 1281 accept 0 ALIGNMENT 1067 Y12-20m03.p1k chr15 18 1238 368841 370067 F 1221 97.30 1250 accept 0 ALIGNMENT 815 Y12-20m03.q1k chr15 1135 35 371777 372878 C 1101 93.19 1410 accept 0 ALIGNMENT 0 Y12-20m04.p1k chr05 923 62 86702 86701 C 862 0.00 1297 reject_low 1 ALIGNMENT 0 Y12-20m04.p1k chr08 62 929 133010 133009 F 868 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-20m04.p1k chr04 62 936 980966 980965 F 875 0.00 1297 reject_low 4 ALIGNMENT 0 Y12-20m04.p1k chr02 929 62 227169 227168 C 868 0.00 1297 reject_low 2 ALIGNMENT 57 Y12-20m04.p1k chr08 930 1025 133010 133101 F 96 89.58 1297 reject_low 3 ALIGNMENT 929 Y12-20m04.p1k chr12 14 1101 167016 168090 F 1088 96.97 1297 accept 0 ALIGNMENT 66 Y12-20m04.p1k chr05 1028 924 86600 86701 C 105 91.43 1297 reject_low 1 ALIGNMENT 893 Y12-20m04.q1k chr12 1201 28 170589 171768 C 1174 94.04 1407 accept 0 ALIGNMENT 61 Y12-20m04.p1k chr02 1024 930 227078 227168 C 95 91.58 1297 reject_low 2 ALIGNMENT 55 Y12-20m04.p1k chr04 937 1024 980966 981049 F 88 90.91 1297 reject_low 4 ALIGNMENT 632 Y12-20m05.q1k chr12 1019 101 999159 1000067 C 919 90.64 1501 accept 0 ALIGNMENT 822 Y12-20m06.p1k chr13 18 1136 494667 495776 F 1119 92.67 1327 accept 0 ALIGNMENT 0 Y12-20m07.p1k chr12 88 62 1018910 1018909 C 27 0.00 1317 reject_low 1 ALIGNMENT 1060 Y12-20m07.p1k chr13 15 1305 146402 147701 F 1291 95.20 1317 accept 0 ALIGNMENT 570 Y12-20m07.p1k chr12 858 89 1018140 1018909 C 770 91.82 1317 reject_low 1 ALIGNMENT 917 Y12-20m07.q1k chr13 1047 4 151109 152159 C 1044 97.51 1316 accept 0 ALIGNMENT 1047 Y12-20m08.p1k chr01 22 1293 172857 174128 F 1272 95.28 1311 accept 0 ALIGNMENT 875 Y12-20m08.q1k chr01 1057 6 177553 178595 C 1052 95.44 1378 accept 0 ALIGNMENT 866 Y12-20m09.p1k chr06 23 1107 75859 76951 F 1085 94.38 1295 accept 0 ALIGNMENT 808 Y12-20m09.q1k chr06 1049 28 79273 80280 C 1022 94.81 1510 accept 0 ALIGNMENT 1007 Y12-20m10.p1k chr16 1219 21 216678 217877 C 1199 95.33 1307 accept 0 ALIGNMENT 512 Y12-20m10.q1k chr16 31 692 212353 213021 F 662 93.50 1466 accept 0 ALIGNMENT 0 Y12-20m12.q1k chr12 135 760 482162 482161 F 626 0.00 1412 reject_low 5 ALIGNMENT 104 Y12-20m12.q1k chr12 27 134 468822 468930 F 108 99.07 1412 reject_low 3 ALIGNMENT 104 Y12-20m12.q1k chr12 27 134 472474 472582 F 108 99.07 1412 reject_low 4 ALIGNMENT 1046 Y12-20m12.p1k chr12 1243 20 462544 463760 C 1224 96.16 1320 accept 0 ALIGNMENT 113 Y12-20m12.q1k chr12 27 149 489358 489481 F 123 97.56 1412 reject_low 2 ALIGNMENT 0 Y12-20m12.q1k chr12 135 760 485814 485813 F 626 0.00 1412 reject_low 6 ALIGNMENT 1046 Y12-20m12.p1k chr12 1243 20 453407 454623 C 1224 96.16 1320 reject_low 1 ALIGNMENT 0 Y12-20m12.q1k chr12 150 760 489481 489480 F 611 0.00 1412 reject_low 2 ALIGNMENT 104 Y12-20m12.q1k chr12 27 134 482054 482162 F 108 99.07 1412 reject_low 5 ALIGNMENT 678 Y12-20m12.q1k chr12 27 1137 459685 460849 F 1111 89.20 1412 accept 0 ALIGNMENT 0 Y12-20m12.q1k chr12 135 760 468930 468929 F 626 0.00 1412 reject_low 3 ALIGNMENT 0 Y12-20m12.q1k chr12 135 760 472582 472581 F 626 0.00 1412 reject_low 4 ALIGNMENT 104 Y12-20m12.q1k chr12 27 134 485706 485814 F 108 99.07 1412 reject_low 6 ALIGNMENT 889 Y12-20m13.q1k chr04 35 1111 234204 235280 F 1077 95.45 1407 accept 0 ALIGNMENT 22 Y12-20m13.p1k chr11 395 477 174930 175012 F 83 77.11 1289 reject_low 1 ALIGNMENT 0 Y12-20m13.p1k chr11 62 394 174930 174929 F 333 0.00 1289 reject_low 1 ALIGNMENT 1018 Y12-20m13.p1k chr04 1178 14 237160 238319 C 1165 96.74 1289 accept 0 ALIGNMENT 0 Y12-20m13.p1k chr11 478 789 175012 175011 F 312 0.00 1289 reject_low 1 ALIGNMENT 992 Y12-20m14.q1k chr15 29 1188 293217 294376 F 1160 96.47 1412 accept 0 ALIGNMENT 1035 Y12-20m14.p1k chr15 1257 18 296927 298169 C 1240 96.05 1274 accept 0 ALIGNMENT 911 Y12-20m15.q1k chr03 32 1211 11657 12840 F 1180 93.56 1426 reject_low 1 ALIGNMENT 910 Y12-20m15.q1k chr03 32 1211 198814 199995 F 1180 93.56 1426 accept 0 ALIGNMENT 0 Y12-20m15.q1k chr03 62 613 293028 293027 F 552 0.00 1426 reject_low 2 ALIGNMENT 343 Y12-20m15.q1k chr03 614 1211 293028 293629 F 598 87.96 1426 reject_low 2 ALIGNMENT 1075 Y12-20m15.p1k chr03 1311 26 202408 203694 C 1286 95.72 1312 accept 0 ALIGNMENT 983 Y12-20m16.p1k chr04 1141 19 146599 147740 C 1123 96.35 1270 accept 0 ALIGNMENT 0 Y12-20m16.p1k chr01 845 80 31492 31491 C 766 0.00 1270 reject_low 1 ALIGNMENT 21 Y12-20m16.p1k chr02 49 79 353618 353648 F 31 96.77 1270 reject_low 2 ALIGNMENT 21 Y12-20m16.p1k chr01 79 49 31491 31521 C 31 96.77 1270 reject_low 1 ALIGNMENT 0 Y12-20m16.p1k chr04 79 845 226876 226875 F 767 0.00 1270 reject_low 3 ALIGNMENT 0 Y12-20m16.p1k chr02 80 845 353648 353647 F 766 0.00 1270 reject_low 2 ALIGNMENT 20 Y12-20m16.p1k chr04 49 78 226847 226876 F 30 96.67 1270 reject_low 3 ALIGNMENT 987 Y12-20m16.q1k chr04 32 1198 143797 144960 F 1167 96.66 1430 accept 0 ALIGNMENT 909 Y12-20m17.q1k chr07 1102 18 679678 680756 C 1085 95.58 1396 accept 0 ALIGNMENT 887 Y12-20m17.p1k chr07 214 1304 676994 678090 F 1091 94.23 1308 accept 0 ALIGNMENT 881 Y12-20m18.q1k chr15 1119 28 648643 649731 C 1092 95.15 1351 accept 0 ALIGNMENT 790 Y12-20m18.p1k chr15 32 964 646224 647144 F 933 96.57 1382 accept 0 ALIGNMENT 1047 Y12-20m19.p1k chr12 13 1215 753515 754720 F 1203 97.01 1247 accept 0 ALIGNMENT 944 Y12-20m19.q1k chr12 1221 24 757309 758505 C 1198 94.41 1425 accept 0 ALIGNMENT 242 Y12-20m20.p1k chr12 849 300 467910 468450 C 550 82.91 1444 accept 1 ALIGNMENT 242 Y12-20m20.p1k chr12 849 300 458773 459313 C 550 82.91 1444 accept 0 ALIGNMENT 411 Y12-20m22.p1k chr12 13 470 1032360 1032820 F 458 97.60 1370 accept 0 ALIGNMENT 561 Y12-20m22.q1k chr12 701 36 1035646 1036310 C 666 95.35 1502 accept 0 ALIGNMENT 963 Y12-20m23.q1k chr13 35 1210 328678 329852 F 1176 95.24 1342 accept 0 ALIGNMENT 944 Y12-20m23.p1k chr13 1186 15 331915 333075 C 1172 95.56 1244 accept 0 ALIGNMENT 800 Y12-20n01.q1k chr12 1055 42 453322 454301 C 1014 95.27 1430 accept_chi 1 ALIGNMENT 800 Y12-20n01.q1k chr12 1055 42 462459 463438 C 1014 95.27 1430 accept_chi 2 ALIGNMENT 951 Y12-20n01.p1k chr16 24 1178 566515 567667 F 1155 95.67 1229 accept_chi 0 ALIGNMENT 1004 Y12-20n02.p1k chr14 14 1140 212801 213925 F 1127 97.78 1253 accept 0 ALIGNMENT 999 Y12-20n02.q1k chr14 1258 32 215655 216892 C 1227 94.87 1360 accept 0 ALIGNMENT 1016 Y12-20n03.p1k chr04 15 1233 69809 71026 F 1219 96.06 1242 accept 0 ALIGNMENT 962 Y12-20n03.q1k chr04 1105 33 74242 75327 C 1073 97.48 1367 accept 0 ALIGNMENT 818 Y12-20n04.p1k chr12 1014 1 970814 971808 C 1014 95.46 1241 accept 0 ALIGNMENT 933 Y12-20n04.q1k chr12 31 1129 967943 969030 F 1099 96.82 1451 accept 0 ALIGNMENT 209 Y12-20n05.p1k chr09 977 561 114947 115349 C 417 86.33 1423 accept 0 ALIGNMENT 615 Y12-20n05.q1k chr09 7 1039 111580 112611 F 1033 87.90 1386 accept 0 ALIGNMENT 868 Y12-20n06.p1k chr02 1071 25 410682 411716 C 1047 95.61 1323 accept 0 ALIGNMENT 905 Y12-20n06.q1k chr02 6 1091 406495 407580 F 1086 95.95 1366 accept 0 ALIGNMENT 877 Y12-20n08.p1k chr15 1143 28 851923 853009 C 1116 95.43 1356 accept 0 ALIGNMENT 432 Y12-20n08.q1k chr15 1 638 848286 848925 F 638 89.97 1207 accept 0 ALIGNMENT 956 Y12-20n09.p1k chr12 1119 24 723171 724281 C 1096 96.81 1285 accept 0 ALIGNMENT 969 Y12-20n09.q1k chr12 1 1253 718785 720031 F 1253 93.85 1403 accept 0 ALIGNMENT 749 Y12-20n10.q1k chr05 952 39 244198 245108 C 914 95.19 1424 accept 0 ALIGNMENT 0 Y12-20n10.q1k chr04 695 632 237034 237033 C 64 0.00 1424 reject_low 1 ALIGNMENT 29 Y12-20n10.q1k chr04 631 584 237033 237080 C 48 87.50 1424 reject_low 1 ALIGNMENT 781 Y12-20n10.p1k chr05 15 999 239577 240556 F 985 94.82 1319 accept 0 ALIGNMENT 0 Y12-20n10.q1k chr04 583 77 237081 237080 C 507 0.00 1424 reject_low 1 ALIGNMENT 1012 Y12-20n11.p1k chr10 1226 18 294734 295930 C 1209 95.62 1305 accept 0 ALIGNMENT 905 Y12-20n11.q1k chr10 30 1110 290237 291318 F 1081 95.74 1407 accept 0 ALIGNMENT 795 Y12-20n12.q1k chr13 1024 31 581771 582765 C 994 94.77 1469 accept 0 ALIGNMENT 849 Y12-20n12.p1k chr13 15 1077 577741 578793 F 1063 95.11 1326 accept 0 ALIGNMENT 838 Y12-20n13.q1k chr16 1016 30 453458 454455 C 987 96.05 1381 accept 0 ALIGNMENT 985 Y12-20n13.p1k chr16 16 1281 450490 451746 F 1266 94.15 1293 accept 0 ALIGNMENT 818 Y12-20n14.p1k chr13 20 1093 772055 773107 F 1074 93.48 1312 accept 0 ALIGNMENT 916 Y12-20n14.q1k chr13 1092 29 773862 774925 C 1064 95.77 1393 accept 0 ALIGNMENT 668 Y12-20n16.q1k chr07 9 803 769350 770130 F 795 96.86 1255 accept 0 ALIGNMENT 687 Y12-20n16.p1k chr07 949 25 772672 773584 C 925 94.81 1388 accept 0 ALIGNMENT 0 Y12-20n18.q1k chr03 1048 950 142764 142945 C 99 0.00 1386 reject_low 26 ALIGNMENT 35 Y12-20n18.q1k chr04 949 815 992506 992637 C 135 78.52 1386 reject_low 29 ALIGNMENT 39 Y12-20n18.q1k chr06 1049 1110 162227 162289 F 62 88.71 1386 reject_low 14 ALIGNMENT 0 Y12-20n18.q1k chr04 814 62 992638 992637 C 753 0.00 1386 reject_low 29 ALIGNMENT 0 Y12-20n18.q1k chr01 828 62 166153 166152 C 767 0.00 1386 reject_low 28 ALIGNMENT 111 Y12-20n18.q1k chr02 821 949 226628 226755 F 129 97.67 1386 reject_low 19 ALIGNMENT 379 Y12-20n18.q1k chr01 34 823 165074 165861 F 790 83.54 1386 reject_low 8 ALIGNMENT 0 Y12-20n18.q1k chr07 62 814 535214 535213 F 753 0.00 1386 reject_low 18 ALIGNMENT 379 Y12-20n18.q1k chr10 823 34 478264 479051 C 790 83.54 1386 reject_low 10 ALIGNMENT 0 Y12-20n18.q1k chr06 1048 62 181032 181031 C 987 0.00 1386 reject_low 15 ALIGNMENT 382 Y12-20n18.q1k chr04 34 823 991550 992337 F 790 83.67 1386 accept 0 ALIGNMENT 992 Y12-20n18.p1k chr04 1238 15 995491 996712 C 1224 95.18 1291 accept 0 ALIGNMENT 108 Y12-20n18.q1k chr03 949 821 124331 124458 C 129 96.90 1386 reject_low 24 ALIGNMENT 113 Y12-20n18.q1k chr02 813 949 221037 221171 F 137 97.08 1386 reject_low 16 ALIGNMENT 0 Y12-20n18.q1k chr02 62 820 265165 265164 F 759 0.00 1386 reject_low 20 ALIGNMENT 203 Y12-20n18.q1k chr04 855 1150 992637 992935 F 296 91.22 1386 accept 0 ALIGNMENT 349 Y12-20n18.q1k chr02 791 34 259903 260660 C 758 82.72 1386 reject_low 13 ALIGNMENT 536 Y12-20n18.q1k chr13 30 823 361829 362620 F 794 90.05 1386 reject_low 3 ALIGNMENT 382 Y12-20n18.q1k chr05 34 823 448227 449014 F 790 83.67 1386 reject_low 6 ALIGNMENT 0 Y12-20n18.q1k chr01 62 820 183140 183139 F 759 0.00 1386 reject_low 27 ALIGNMENT 0 Y12-20n18.q1k chr06 820 62 162126 162125 C 759 0.00 1386 reject_low 25 ALIGNMENT 39 Y12-20n18.q1k chr03 1110 1049 142701 142763 C 62 88.71 1386 reject_low 26 ALIGNMENT 0 Y12-20n18.q1k chr03 814 62 143079 143078 C 753 0.00 1386 reject_low 26 ALIGNMENT 0 Y12-20n18.q1k chr11 820 62 517423 517422 C 759 0.00 1386 reject_low 21 ALIGNMENT 0 Y12-20n18.q1k chr02 62 812 259573 259572 F 751 0.00 1386 reject_low 17 ALIGNMENT 111 Y12-20n18.q1k chr11 949 821 517295 517422 C 129 97.67 1386 reject_low 21 ALIGNMENT 35 Y12-20n18.q1k chr01 949 829 166033 166152 C 121 78.51 1386 reject_low 28 ALIGNMENT 0 Y12-20n18.q1k chr02 62 820 226628 226627 F 759 0.00 1386 reject_low 19 ALIGNMENT 548 Y12-20n18.q1k chr04 823 30 803196 803987 C 794 90.55 1386 reject_low 1 ALIGNMENT 0 Y12-20n18.q1k chr06 62 1048 162227 162226 F 987 0.00 1386 reject_low 14 ALIGNMENT 382 Y12-20n18.q1k chr16 823 34 56754 57541 C 790 83.67 1386 reject_low 7 ALIGNMENT 379 Y12-20n18.q1k chr07 823 34 536067 536854 C 790 83.54 1386 reject_low 9 ALIGNMENT 373 Y12-20n18.q1k chr12 823 34 651125 651912 C 790 83.29 1386 reject_low 12 ALIGNMENT 108 Y12-20n18.q1k chr06 949 821 161998 162125 C 129 96.90 1386 reject_low 25 ALIGNMENT 39 Y12-20n18.q1k chr06 1110 1049 180969 181031 C 62 88.71 1386 reject_low 15 ALIGNMENT 0 Y12-20n18.q1k chr03 820 62 124459 124458 C 759 0.00 1386 reject_low 24 ALIGNMENT 542 Y12-20n18.q1k chr02 823 30 221339 222130 C 794 90.30 1386 reject_low 2 ALIGNMENT 111 Y12-20n18.q1k chr02 821 949 265165 265292 F 129 97.67 1386 reject_low 20 ALIGNMENT 93 Y12-20n18.q1k chr01 821 949 183140 183267 F 129 93.02 1386 reject_low 27 ALIGNMENT 112 Y12-20n18.q1k chr07 815 949 535214 535346 F 135 97.04 1386 reject_low 18 ALIGNMENT 111 Y12-20n18.q1k chr04 816 949 802900 803031 F 134 97.01 1386 reject_low 23 ALIGNMENT 425 Y12-20n18.q1k chr14 30 823 101435 102226 F 794 85.39 1386 reject_low 4 ALIGNMENT 0 Y12-20n18.q1k chr02 62 812 221037 221036 F 751 0.00 1386 reject_low 16 ALIGNMENT 0 Y12-20n18.q1k chr04 824 854 992338 992636 F 31 0.00 1386 accept 0 ALIGNMENT 382 Y12-20n18.q1k chr04 823 34 1206993 1207780 C 790 83.67 1386 reject_low 5 ALIGNMENT 113 Y12-20n18.q1k chr02 813 949 259573 259707 F 137 97.08 1386 reject_low 17 ALIGNMENT 0 Y12-20n18.q1k chr13 820 62 357332 357331 C 759 0.00 1386 reject_low 22 ALIGNMENT 379 Y12-20n18.q1k chr16 34 823 809472 810259 F 790 83.54 1386 reject_low 11 ALIGNMENT 111 Y12-20n18.q1k chr13 949 821 357204 357331 C 129 97.67 1386 reject_low 22 ALIGNMENT 109 Y12-20n18.q1k chr03 949 815 142946 143078 C 135 96.30 1386 reject_low 26 ALIGNMENT 0 Y12-20n18.q1k chr04 62 815 802900 802899 F 754 0.00 1386 reject_low 23 ALIGNMENT 844 Y12-20n20.q1k chr10 998 3 446660 447651 C 996 96.89 1388 accept 0 ALIGNMENT 814 Y12-20n20.p1k chr10 20 1156 444978 446101 F 1137 92.88 1254 accept 0 ALIGNMENT 1028 Y12-20n21.q1k chr13 34 1210 448089 449272 F 1177 96.69 1367 accept 0 ALIGNMENT 990 Y12-20n21.p1k chr13 1256 19 451131 452361 C 1238 94.99 1275 accept 0 ALIGNMENT 893 Y12-20n22.p1k chr10 1020 15 514600 515595 C 1006 97.91 1309 accept 0 ALIGNMENT 806 Y12-20n22.q1k chr10 5 893 511088 511976 F 889 98.31 1388 accept 0 ALIGNMENT 288 Y12-20n23.p1k chr07 737 426 823000 823311 C 312 99.68 1230 reject_low 12 ALIGNMENT 0 Y12-20n23.p1k chr02 738 896 259887 259886 F 159 0.00 1230 reject_low 15 ALIGNMENT 0 Y12-20n23.p1k chr02 758 896 226955 226954 F 139 0.00 1230 reject_low 5 ALIGNMENT 0 Y12-20n23.p1k chr01 896 759 165827 165826 C 138 0.00 1230 reject_low 21 ALIGNMENT 0 Y12-20n23.p1k chr13 896 758 357005 357004 C 139 0.00 1230 reject_low 6 ALIGNMENT 0 Y12-20n23.p1k chr14 896 759 102192 102191 C 138 0.00 1230 reject_low 1 ALIGNMENT 0 Y12-20n23.p1k chr11 424 62 517428 517427 C 363 0.00 1230 reject_low 2 ALIGNMENT 0 Y12-20n23.p1k chr07 425 62 817730 817729 C 364 0.00 1230 reject_low 11 ALIGNMENT 0 Y12-20n23.p1k chr08 896 738 543631 543630 C 159 0.00 1230 reject_low 17 ALIGNMENT 0 Y12-20n23.p1k chr02 62 425 226624 226623 F 364 0.00 1230 reject_low 5 ALIGNMENT 0 Y12-20n23.p1k chr13 738 896 184481 184480 F 159 0.00 1230 reject_low 18 ALIGNMENT 0 Y12-20n23.p1k chr11 896 758 457784 457783 C 139 0.00 1230 reject_low 10 ALIGNMENT 0 Y12-20n23.p1k chr01 424 62 166165 166164 C 363 0.00 1230 reject_low 21 ALIGNMENT 206 Y12-20n23.p1k chr01 764 426 160232 160575 C 339 89.38 1230 reject_low 20 ALIGNMENT 0 Y12-20n23.p1k chr14 418 62 102532 102531 C 357 0.00 1230 reject_low 1 ALIGNMENT 0 Y12-20n23.p1k chr01 896 765 160233 160232 C 132 0.00 1230 reject_low 20 ALIGNMENT 0 Y12-20n23.p1k chr02 757 426 643239 643233 C 332 0.00 1230 reject_bad_break 0 ALIGNMENT 0 Y12-20n23.p1k chr13 62 425 184170 184169 F 364 0.00 1230 reject_low 18 ALIGNMENT 0 Y12-20n23.p1k chr02 62 425 221040 221039 F 364 0.00 1230 reject_low 7 ALIGNMENT 303 Y12-20n23.p1k chr02 426 758 221040 221374 F 333 99.10 1230 reject_low 7 ALIGNMENT 0 Y12-20n23.p1k chr01 425 62 160576 160575 C 364 0.00 1230 reject_low 20 ALIGNMENT 0 Y12-20n23.p1k chr07 735 896 817387 817386 F 162 0.00 1230 reject_low 23 ALIGNMENT 303 Y12-20n23.p1k chr14 758 419 102191 102531 C 340 98.53 1230 reject_low 1 ALIGNMENT 288 Y12-20n23.p1k chr15 426 737 594821 595132 F 312 99.68 1230 reject_low 13 ALIGNMENT 0 Y12-20n23.p1k chr02 738 896 265472 265471 F 159 0.00 1230 reject_low 16 ALIGNMENT 0 Y12-20n23.p1k chr02 62 425 265161 265160 F 364 0.00 1230 reject_low 16 ALIGNMENT 0 Y12-20n23.p1k chr14 62 425 102549 102548 F 364 0.00 1230 reject_low 24 ALIGNMENT 0 Y12-20n23.p1k chr02 759 896 221374 221373 F 138 0.00 1230 reject_low 7 ALIGNMENT 1004 Y12-20n23.q1k chr02 30 1216 639991 641178 F 1187 95.87 1359 reject_bad_break 0 ALIGNMENT 288 Y12-20n23.p1k chr15 426 737 600403 600714 F 312 99.68 1230 reject_low 14 ALIGNMENT 29 Y12-20n23.p1k chr14 426 455 102549 102578 F 30 100.00 1230 reject_low 24 ALIGNMENT 0 Y12-20n23.p1k chr13 425 62 357336 357335 C 364 0.00 1230 reject_low 6 ALIGNMENT 285 Y12-20n23.p1k chr02 426 737 259576 259887 F 312 99.36 1230 reject_low 15 ALIGNMENT 0 Y12-20n23.p1k chr07 425 62 823312 823311 C 364 0.00 1230 reject_low 12 ALIGNMENT 274 Y12-20n23.p1k chr10 425 758 472376 472715 F 334 96.11 1230 reject_low 19 ALIGNMENT 288 Y12-20n23.p1k chr11 757 426 457783 458114 C 332 97.59 1230 reject_low 10 ALIGNMENT 0 Y12-20n23.p1k chr07 896 738 817419 817418 C 159 0.00 1230 reject_low 11 ALIGNMENT 0 Y12-20n23.p1k chr15 62 543 594630 594629 F 482 0.00 1230 reject_low 22 ALIGNMENT 184 Y12-20n23.p1k chr02 959 758 643038 643238 C 202 98.02 1230 reject_bad_break 0 ALIGNMENT 0 Y12-20n23.p1k chr15 62 425 600403 600402 F 364 0.00 1230 reject_low 14 ALIGNMENT 209 Y12-20n23.p1k chr01 758 425 165826 166164 C 334 89.82 1230 reject_low 21 ALIGNMENT 0 Y12-20n23.p1k chr13 896 759 362586 362585 C 138 0.00 1230 reject_low 4 ALIGNMENT 311 Y12-20n23.p1k chr11 757 425 517095 517427 C 333 99.70 1230 reject_low 2 ALIGNMENT 0 Y12-20n23.p1k chr14 425 62 96942 96941 C 364 0.00 1230 reject_low 8 ALIGNMENT 0 Y12-20n23.p1k chr13 425 62 362918 362917 C 364 0.00 1230 reject_low 4 ALIGNMENT 292 Y12-20n23.p1k chr07 426 758 931691 932023 F 333 97.90 1230 reject_low 9 ALIGNMENT 0 Y12-20n23.p1k chr07 62 622 817278 817277 F 561 0.00 1230 reject_low 23 ALIGNMENT 0 Y12-20n23.p1k chr08 425 62 543942 543941 C 364 0.00 1230 reject_low 17 ALIGNMENT 0 Y12-20n23.p1k chr10 62 424 472376 472375 F 363 0.00 1230 reject_low 19 ALIGNMENT 310 Y12-20n23.p1k chr13 758 426 362585 362917 C 333 99.70 1230 reject_low 4 ALIGNMENT 288 Y12-20n23.p1k chr07 737 426 817418 817729 C 312 99.68 1230 reject_low 11 ALIGNMENT 0 Y12-20n23.p1k chr07 759 896 932023 932022 F 138 0.00 1230 reject_low 9 ALIGNMENT 0 Y12-20n23.p1k chr15 674 896 594759 594758 F 223 0.00 1230 reject_low 22 ALIGNMENT 0 Y12-20n23.p1k chr15 738 896 600714 600713 F 159 0.00 1230 reject_low 14 ALIGNMENT 0 Y12-20n23.p1k chr15 62 425 594821 594820 F 364 0.00 1230 reject_low 13 ALIGNMENT 0 Y12-20n23.p1k chr10 759 896 472715 472714 F 138 0.00 1230 reject_low 19 ALIGNMENT 309 Y12-20n23.p1k chr02 426 757 226624 226955 F 332 99.70 1230 reject_low 5 ALIGNMENT 0 Y12-20n23.p1k chr07 62 425 931691 931690 F 364 0.00 1230 reject_low 9 ALIGNMENT 0 Y12-20n23.p1k chr02 62 425 259576 259575 F 364 0.00 1230 reject_low 15 ALIGNMENT 0 Y12-20n23.p1k chr07 758 896 535546 535545 F 139 0.00 1230 reject_low 3 ALIGNMENT 285 Y12-20n23.p1k chr08 737 426 543630 543941 C 312 99.36 1230 reject_low 17 ALIGNMENT 57 Y12-20n23.p1k chr07 623 734 817278 817387 F 112 86.61 1230 reject_low 23 ALIGNMENT 0 Y12-20n23.p1k chr15 738 896 595132 595131 F 159 0.00 1230 reject_low 13 ALIGNMENT 81 Y12-20n23.p1k chr15 544 673 594630 594759 F 130 90.00 1230 reject_low 22 ALIGNMENT 0 Y12-20n23.p1k chr11 896 758 517096 517095 C 139 0.00 1230 reject_low 2 ALIGNMENT 0 Y12-20n23.p1k chr14 896 758 96611 96610 C 139 0.00 1230 reject_low 8 ALIGNMENT 312 Y12-20n23.p1k chr07 426 757 535215 535546 F 332 100.00 1230 reject_low 3 ALIGNMENT 0 Y12-20n23.p1k chr07 896 738 823001 823000 C 159 0.00 1230 reject_low 12 ALIGNMENT 309 Y12-20n23.p1k chr13 757 426 357004 357335 C 332 99.70 1230 reject_low 6 ALIGNMENT 285 Y12-20n23.p1k chr13 426 737 184170 184481 F 312 99.36 1230 reject_low 18 ALIGNMENT 380 Y12-20n23.p1k chr02 425 15 643234 643645 C 411 99.03 1230 reject_bad_break 0 ALIGNMENT 0 Y12-20n23.p1k chr14 456 896 102578 102577 F 441 0.00 1230 reject_low 24 ALIGNMENT 300 Y12-20n23.p1k chr14 757 426 96610 96941 C 332 98.80 1230 reject_low 8 ALIGNMENT 0 Y12-20n23.p1k chr11 425 62 458115 458114 C 364 0.00 1230 reject_low 10 ALIGNMENT 0 Y12-20n23.p1k chr07 62 425 535215 535214 F 364 0.00 1230 reject_low 3 ALIGNMENT 285 Y12-20n23.p1k chr02 426 737 265161 265472 F 312 99.36 1230 reject_low 16 ALIGNMENT 995 Y12-20n24.q1k chr06 31 1166 62967 64099 F 1136 96.83 1337 accept 0 ALIGNMENT 912 Y12-20n24.p1k chr06 1085 19 67431 68484 C 1067 96.91 1249 accept 0 ALIGNMENT 719 Y12-20o01.p1k chr16 45 891 782684 783517 F 847 96.93 1480 accept 0 ALIGNMENT 725 Y12-20o02.q1k chr04 1 1008 1082544 1083538 F 1008 92.56 1281 accept 0 ALIGNMENT 801 Y12-20o02.p1k chr04 1072 14 1085949 1086990 C 1059 94.33 1246 accept 0 ALIGNMENT 1023 Y12-20o03.p1k chr07 13 1153 1064144 1065292 F 1141 97.28 1236 accept 0 ALIGNMENT 976 Y12-20o03.q1k chr07 1296 32 1068823 1070074 C 1265 93.99 1414 accept 0 ALIGNMENT 986 Y12-20o04.p1k chr10 3 1168 688515 689664 F 1166 96.48 1248 accept 0 ALIGNMENT 986 Y12-20o04.q1k chr10 1189 24 693847 695011 C 1166 96.31 1415 accept 0 ALIGNMENT 1018 Y12-20o05.p1k chr15 14 1295 137184 138439 F 1282 95.40 1308 accept 0 ALIGNMENT 1020 Y12-20o05.q1k chr15 1198 30 140275 141442 C 1169 97.18 1445 accept 0 ALIGNMENT 844 Y12-20o06.q1k chr10 1055 5 671875 672927 C 1051 95.34 1333 accept 0 ALIGNMENT 892 Y12-20o06.p1k chr10 23 1050 668643 669657 F 1028 97.28 1346 accept 0 ALIGNMENT 1053 Y12-20o07.p1k chr12 1276 18 394917 396183 C 1259 95.95 1288 accept 0 ALIGNMENT 933 Y12-20o07.q1k chr12 33 1275 391540 392778 F 1243 93.40 1442 accept 0 ALIGNMENT 952 Y12-20o09.q1k chr16 31 1183 514237 515377 F 1153 95.58 1416 accept 0 ALIGNMENT 1022 Y12-20o09.p1k chr16 1215 16 517397 518600 C 1200 95.92 1264 accept 0 ALIGNMENT 1003 Y12-20o10.q1k chr07 34 1243 836906 838123 F 1210 95.70 1400 accept 0 ALIGNMENT 1007 Y12-20o10.p1k chr07 1238 16 840415 841624 C 1223 95.99 1282 accept 0 ALIGNMENT 914 Y12-20o11.p1k chr04 21 1095 962440 963502 F 1075 97.12 1364 accept 0 ALIGNMENT 724 Y12-20o11.q1k chr04 1100 2 965808 966884 C 1099 91.54 1340 accept 0 ALIGNMENT 0 Y12-20o12.q1k chr05 567 789 435821 435820 F 223 0.00 1348 reject_low 16 ALIGNMENT 82 Y12-20o12.q1k chr05 485 581 135417 135513 F 97 94.85 1348 reject_low 10 ALIGNMENT 84 Y12-20o12.q1k chr10 580 484 414866 414963 C 97 95.88 1348 reject_low 11 ALIGNMENT 79 Y12-20o12.q1k chr05 485 566 435740 435821 F 82 98.78 1348 reject_low 16 ALIGNMENT 27 Y12-20o12.q1k chr12 754 892 221124 221265 F 139 76.98 1348 reject_low 5 ALIGNMENT 0 Y12-20o12.p1k chr16 196 773 561145 561144 F 578 0.00 1300 reject_low 2 ALIGNMENT 23 Y12-20o12.q1k chr04 666 779 1352678 1352792 F 114 78.95 1348 reject_low 9 ALIGNMENT 0 Y12-20o12.q1k chr07 789 570 876396 876395 C 220 0.00 1348 reject_low 13 ALIGNMENT 612 Y12-20o12.q1k chr04 10 670 1351970 1352633 F 661 98.49 1348|0,3 accept_chi 1 ALIGNMENT 0 Y12-20o12.q1k chr12 62 753 221124 221123 F 692 0.00 1348 reject_low 5 ALIGNMENT 259 Y12-20o12.q1k chr04 665 1070 1352965 1353382 F 406 90.89 1348|3,0 accept_chi 1 ALIGNMENT 0 Y12-20o12.q1k chr04 491 62 1201814 1201813 C 430 0.00 1348 reject_low 15 ALIGNMENT 0 Y12-20o12.q1k chr10 483 62 414964 414963 C 422 0.00 1348 reject_low 11 ALIGNMENT 82 Y12-20o12.q1k chr11 566 479 202644 202731 C 88 97.73 1348 reject_low 7 ALIGNMENT 0 Y12-20o12.q1k chr07 483 62 876481 876480 C 422 0.00 1348 reject_low 13 ALIGNMENT 0 Y12-20o12.q1k chr05 582 789 135513 135512 F 208 0.00 1348 reject_low 10 ALIGNMENT 0 Y12-20o12.q1k chr13 621 62 481545 481544 C 560 0.00 1348 reject_low 4 ALIGNMENT 0 Y12-20o12.q1k chr05 62 484 135417 135416 F 423 0.00 1348 reject_low 10 ALIGNMENT 0 Y12-20o12.q1k chr04 668 667 1352631 1352967 F 0 0.00 1348 accept_chi 1 ALIGNMENT 0 Y12-20o12.q1k chr10 789 581 414867 414866 C 209 0.00 1348 reject_low 11 ALIGNMENT 58 Y12-20o12.q1k chr13 875 622 481287 481544 C 254 77.95 1348 reject_low 4 ALIGNMENT 0 Y12-20o12.q1k chr07 62 482 185710 185709 F 421 0.00 1348 reject_low 6 ALIGNMENT 79 Y12-20o12.q1k chr04 570 492 1201735 1201813 C 79 100.00 1348 reject_low 15 ALIGNMENT 81 Y12-20o12.q1k chr03 484 570 151272 151358 F 87 97.70 1348 reject_low 14 ALIGNMENT 0 Y12-20o12.q1k chr04 62 665 1352678 1352677 F 604 0.00 1348 reject_low 9 ALIGNMENT 0 Y12-20o12.q1k chr09 62 484 300219 300218 F 423 0.00 1348 reject_low 3 ALIGNMENT 149 Y12-20o12.q1k chr09 485 671 300219 300404 F 187 94.65 1348 reject_low 3 ALIGNMENT 0 Y12-20o12.q1k chr13 568 789 480694 480693 F 222 0.00 1348 reject_low 17 ALIGNMENT 0 Y12-20o12.q1k chr06 62 483 226666 226665 F 422 0.00 1348 reject_low 18 ALIGNMENT 0 Y12-20o12.q1k chr07 581 789 185807 185806 F 209 0.00 1348 reject_low 6 ALIGNMENT 78 Y12-20o12.q1k chr13 484 567 480612 480694 F 84 98.81 1348 reject_low 17 ALIGNMENT 69 Y12-20o12.q1k chr06 484 565 226666 226747 F 82 96.34 1348 reject_low 18 ALIGNMENT 0 Y12-20o12.q1k chr09 672 789 300404 300403 F 118 0.00 1348 reject_low 3 ALIGNMENT 0 Y12-20o12.q1k chr03 571 789 151358 151357 F 219 0.00 1348 reject_low 14 ALIGNMENT 0 Y12-20o12.q1k chr05 62 484 435740 435739 F 423 0.00 1348 reject_low 16 ALIGNMENT 90 Y12-20o12.q1k chr07 580 484 122258 122355 C 97 97.94 1348 reject_low 8 ALIGNMENT 84 Y12-20o12.q1k chr16 575 483 582049 582141 C 93 96.77 1348 reject_low 12 ALIGNMENT 0 Y12-20o12.q1k chr13 62 483 480612 480611 F 422 0.00 1348 reject_low 17 ALIGNMENT 0 Y12-20o12.q1k chr11 478 62 202732 202731 C 417 0.00 1348 reject_low 7 ALIGNMENT 0 Y12-20o12.q1k chr16 789 576 582050 582049 C 214 0.00 1348 reject_low 12 ALIGNMENT 844 Y12-20o12.p1k chr16 1071 18 570918 571955 C 1054 95.92 1300 accept_chi 0 ALIGNMENT 0 Y12-20o12.q1k chr03 62 483 151272 151271 F 422 0.00 1348 reject_low 14 ALIGNMENT 0 Y12-20o12.q1k chr16 482 62 582142 582141 C 421 0.00 1348 reject_low 12 ALIGNMENT 0 Y12-20o12.q1k chr04 789 571 1201736 1201735 C 219 0.00 1348 reject_low 15 ALIGNMENT 78 Y12-20o12.p1k chr16 18 195 560969 561145 F 178 84.27 1300 reject_low 2 ALIGNMENT 0 Y12-20o12.q1k chr06 566 789 226747 226746 F 224 0.00 1348 reject_low 18 ALIGNMENT 0 Y12-20o12.q1k chr11 789 567 202645 202644 C 223 0.00 1348 reject_low 7 ALIGNMENT 0 Y12-20o12.q1k chr07 483 62 122356 122355 C 422 0.00 1348 reject_low 8 ALIGNMENT 95 Y12-20o12.q1k chr07 483 580 185710 185807 F 98 98.98 1348 reject_low 6 ALIGNMENT 0 Y12-20o12.q1k chr07 789 581 122259 122258 C 209 0.00 1348 reject_low 8 ALIGNMENT 83 Y12-20o12.q1k chr07 569 484 876395 876480 C 86 98.84 1348 reject_low 13 ALIGNMENT 0 Y12-20o13.q1k chr06 311 697 162307 162306 F 387 0.00 1399 reject_low 3 ALIGNMENT 73 Y12-20o13.q1k chr02 294 222 197631 197703 C 73 100.00 1399 reject_low 9 ALIGNMENT 0 Y12-20o13.q1k chr16 62 221 860374 860373 F 160 0.00 1399 reject_low 5 ALIGNMENT 0 Y12-20o13.q1k chr04 294 697 992896 992895 F 404 0.00 1399 reject_low 11 ALIGNMENT 0 Y12-20o13.q1k chr15 294 697 282234 282233 F 404 0.00 1399 reject_low 15 ALIGNMENT 0 Y12-20o13.q1k chr07 221 62 931028 931027 C 160 0.00 1399 reject_low 1 ALIGNMENT 0 Y12-20o13.q1k chr07 295 697 845725 845724 F 403 0.00 1399 reject_low 10 ALIGNMENT 0 Y12-20o13.q1k chr10 697 294 396643 396642 C 404 0.00 1399 reject_low 13 ALIGNMENT 0 Y12-20o13.q1k chr10 221 62 396714 396713 C 160 0.00 1399 reject_low 13 ALIGNMENT 75 Y12-20o13.q1k chr16 218 298 572261 572341 F 81 97.53 1399 reject_low 2 ALIGNMENT 0 Y12-20o13.q1k chr16 307 697 860458 860457 F 391 0.00 1399 reject_low 5 ALIGNMENT 70 Y12-20o13.q1k chr13 293 223 183898 183968 C 71 100.00 1399 reject_low 14 ALIGNMENT 840 Y12-20o13.q1k chr04 28 1063 83354 84382 F 1036 94.88 1399 accept 0 ALIGNMENT 74 Y12-20o13.q1k chr06 222 310 162221 162307 F 89 96.63 1399 reject_low 3 ALIGNMENT 72 Y12-20o13.q1k chr10 222 308 531741 531826 F 87 95.40 1399 reject_low 6 ALIGNMENT 74 Y12-20o13.q1k chr15 298 222 226604 226680 C 77 98.70 1399 reject_low 7 ALIGNMENT 0 Y12-20o13.q1k chr02 221 62 197704 197703 C 160 0.00 1399 reject_low 9 ALIGNMENT 0 Y12-20o13.q1k chr05 697 307 61878 61877 C 391 0.00 1399 reject_low 4 ALIGNMENT 0 Y12-20o13.q1k chr06 62 221 162221 162220 F 160 0.00 1399 reject_low 3 ALIGNMENT 75 Y12-20o13.q1k chr16 222 306 860374 860458 F 85 96.47 1399 reject_low 5 ALIGNMENT 0 Y12-20o13.q1k chr03 220 62 142771 142770 C 159 0.00 1399 reject_low 8 ALIGNMENT 70 Y12-20o13.q1k chr07 314 222 930938 931027 C 93 94.62 1399 reject_low 1 ALIGNMENT 72 Y12-20o13.q1k chr10 293 222 396642 396713 C 72 100.00 1399 reject_low 13 ALIGNMENT 0 Y12-20o13.q1k chr15 697 299 226605 226604 C 399 0.00 1399 reject_low 7 ALIGNMENT 73 Y12-20o13.q1k chr03 293 221 142698 142770 C 73 100.00 1399 reject_low 8 ALIGNMENT 0 Y12-20o13.q1k chr13 222 62 183969 183968 C 161 0.00 1399 reject_low 14 ALIGNMENT 0 Y12-20o13.q1k chr07 697 315 930939 930938 C 383 0.00 1399 reject_low 1 ALIGNMENT 70 Y12-20o13.q1k chr15 223 293 282164 282234 F 71 100.00 1399 reject_low 15 ALIGNMENT 0 Y12-20o13.q1k chr16 62 217 572261 572260 F 156 0.00 1399 reject_low 2 ALIGNMENT 0 Y12-20o13.q1k chr16 299 697 572341 572340 F 399 0.00 1399 reject_low 2 ALIGNMENT 75 Y12-20o13.q1k chr05 306 222 61877 61961 C 85 96.47 1399 reject_low 4 ALIGNMENT 0 Y12-20o13.q1k chr10 309 697 531826 531825 F 389 0.00 1399 reject_low 6 ALIGNMENT 0 Y12-20o13.q1k chr15 221 62 226681 226680 C 160 0.00 1399 reject_low 7 ALIGNMENT 73 Y12-20o13.q1k chr07 222 294 845653 845725 F 73 100.00 1399 reject_low 10 ALIGNMENT 72 Y12-20o13.q1k chr06 293 222 180966 181037 C 72 100.00 1399 reject_low 12 ALIGNMENT 0 Y12-20o13.q1k chr02 697 295 197632 197631 C 403 0.00 1399 reject_low 9 ALIGNMENT 0 Y12-20o13.q1k chr07 62 221 845653 845652 F 160 0.00 1399 reject_low 10 ALIGNMENT 0 Y12-20o13.q1k chr04 62 221 992825 992824 F 160 0.00 1399 reject_low 11 ALIGNMENT 0 Y12-20o13.q1k chr06 221 62 181038 181037 C 160 0.00 1399 reject_low 12 ALIGNMENT 0 Y12-20o13.q1k chr10 62 221 531741 531740 F 160 0.00 1399 reject_low 6 ALIGNMENT 0 Y12-20o13.q1k chr13 697 294 183899 183898 C 404 0.00 1399 reject_low 14 ALIGNMENT 0 Y12-20o13.q1k chr15 62 222 282164 282163 F 161 0.00 1399 reject_low 15 ALIGNMENT 72 Y12-20o13.q1k chr04 222 293 992825 992896 F 72 100.00 1399 reject_low 11 ALIGNMENT 0 Y12-20o13.q1k chr06 697 294 180967 180966 C 404 0.00 1399 reject_low 12 ALIGNMENT 0 Y12-20o13.q1k chr05 221 62 61962 61961 C 160 0.00 1399 reject_low 4 ALIGNMENT 0 Y12-20o13.q1k chr03 697 294 142699 142698 C 404 0.00 1399 reject_low 8 ALIGNMENT 299 Y12-20o13.p1k chr04 920 13 86791 87677 C 908 79.96 1294 accept 0 ALIGNMENT 942 Y12-20o15.q1k chr05 1144 31 480170 481294 C 1114 96.68 1385 accept_chi 0 ALIGNMENT 909 Y12-20o15.p1k chr14 1151 20 300775 301906 C 1132 94.61 1312 accept_chi 1 ALIGNMENT 983 Y12-20o16.p1k chr04 1219 14 1430634 1431841 C 1206 95.11 1283 accept 0 ALIGNMENT 963 Y12-20o16.q1k chr04 33 1274 1426667 1427915 F 1242 93.88 1429 accept 0 ALIGNMENT 887 Y12-20o17.p1k chr11 1019 6 184934 185941 C 1014 97.83 1306 accept 0 ALIGNMENT 845 Y12-20o17.q1k chr11 1 1056 180709 181762 F 1056 95.27 1339 accept 0 ALIGNMENT 950 Y12-20o18.q1k chr14 29 1107 355025 356102 F 1079 96.85 1393 accept 0 ALIGNMENT 820 Y12-20o18.p1k chr14 1124 1 358604 359744 C 1124 92.88 1234 accept 0 ALIGNMENT 916 Y12-20o19.p1k chr15 3 1069 46785 47842 F 1067 96.81 1240 accept 0 ALIGNMENT 963 Y12-20o19.q1k chr15 1305 28 50217 51477 C 1278 94.44 1428 accept 0 ALIGNMENT 152 Y12-20o20.p1k chr04 485 927 1443757 1444197 F 443 79.01 1265 reject_low 1 ALIGNMENT 0 Y12-20o20.p1k chr04 62 484 1443757 1443756 F 423 0.00 1265 reject_low 1 ALIGNMENT 907 Y12-20o20.p1k chr15 1124 20 125147 126237 C 1105 96.11 1265 accept_trans 0 ALIGNMENT 954 Y12-20o20.q1k chr15 32 1198 116204 117384 F 1167 95.46 1358 accept_trans 0 ALIGNMENT 27 Y12-20o22.q1k chr15 956 694 42751 43007 C 263 71.86 1340 accept 0 ALIGNMENT 194 Y12-20o22.q1k chr15 643 37 43099 43691 C 607 79.57 1340 accept 0 ALIGNMENT 0 Y12-20o22.q1k chr15 693 644 43008 43098 C 50 0.00 1340 accept 0 ALIGNMENT 1024 Y12-20o23.q1k chr07 1252 38 1064216 1065430 C 1215 95.31 1304 accept 0 ALIGNMENT 1039 Y12-20o23.p1k chr07 16 1201 1061038 1062215 F 1186 97.05 1216 accept 0 ALIGNMENT 743 Y12-20o24.p1k chr13 905 14 419976 420858 C 892 96.64 1393 accept 0 ALIGNMENT 0 Y12-20o24.p1k chr13 206 62 586709 586708 C 145 0.00 1393 reject_low 8 ALIGNMENT 0 Y12-20o24.p1k chr11 281 799 379396 379395 F 519 0.00 1393 reject_low 10 ALIGNMENT 0 Y12-20o24.p1k chr15 206 62 663886 663885 C 145 0.00 1393 reject_low 13 ALIGNMENT 0 Y12-20o24.p1k chr07 287 799 823566 823565 F 513 0.00 1393 reject_low 6 ALIGNMENT 76 Y12-20o24.p1k chr11 202 280 379318 379396 F 79 98.73 1393 reject_low 10 ALIGNMENT 0 Y12-20o24.p1k chr13 799 287 372439 372438 C 513 0.00 1393 reject_low 7 ALIGNMENT 76 Y12-20o24.p1k chr08 286 207 85288 85367 C 80 98.75 1393 reject_low 12 ALIGNMENT 0 Y12-20o24.p1k chr08 799 287 85289 85288 C 513 0.00 1393 reject_low 12 ALIGNMENT 0 Y12-20o24.p1k chr05 287 799 438775 438774 F 513 0.00 1393 reject_low 9 ALIGNMENT 0 Y12-20o24.p1k chr08 206 62 85368 85367 C 145 0.00 1393 reject_low 12 ALIGNMENT 78 Y12-20o24.p1k chr05 206 286 438695 438775 F 81 98.77 1393 reject_low 9 ALIGNMENT 0 Y12-20o24.p1k chr12 198 62 687943 687942 C 137 0.00 1393 reject_low 1 ALIGNMENT 0 Y12-20o24.p1k chr07 799 287 73823 73822 C 513 0.00 1393 reject_low 11 ALIGNMENT 79 Y12-20o24.p1k chr13 286 207 372438 372517 C 80 100.00 1393 reject_low 7 ALIGNMENT 0 Y12-20o24.p1k chr11 799 287 307784 307783 C 513 0.00 1393 reject_low 4 ALIGNMENT 79 Y12-20o24.p1k chr10 202 286 378271 378355 F 85 97.65 1393 reject_low 5 ALIGNMENT 0 Y12-20o24.p1k chr07 197 62 412380 412379 C 136 0.00 1393 reject_low 2 ALIGNMENT 79 Y12-20o24.p1k chr07 207 286 823487 823566 F 80 100.00 1393 reject_low 6 ALIGNMENT 914 Y12-20o24.q1k chr13 33 1267 416501 417752 F 1235 93.20 1285 accept 0 ALIGNMENT 0 Y12-20o24.p1k chr10 62 201 378271 378270 F 140 0.00 1393 reject_low 5 ALIGNMENT 0 Y12-20o24.p1k chr07 799 289 412290 412289 C 511 0.00 1393 reject_low 2 ALIGNMENT 76 Y12-20o24.p1k chr15 285 207 663807 663885 C 79 98.73 1393 reject_low 13 ALIGNMENT 0 Y12-20o24.p1k chr07 206 62 73902 73901 C 145 0.00 1393 reject_low 11 ALIGNMENT 0 Y12-20o24.p1k chr12 799 289 687854 687853 C 511 0.00 1393 reject_low 1 ALIGNMENT 0 Y12-20o24.p1k chr13 206 62 372518 372517 C 145 0.00 1393 reject_low 7 ALIGNMENT 79 Y12-20o24.p1k chr13 286 207 586629 586708 C 80 100.00 1393 reject_low 8 ALIGNMENT 0 Y12-20o24.p1k chr11 196 62 307873 307872 C 135 0.00 1393 reject_low 4 ALIGNMENT 87 Y12-20o24.p1k chr12 288 199 687853 687942 C 90 98.89 1393 reject_low 1 ALIGNMENT 0 Y12-20o24.p1k chr11 62 201 379318 379317 F 140 0.00 1393 reject_low 10 ALIGNMENT 78 Y12-20o24.p1k chr11 286 197 307783 307872 C 90 95.56 1393 reject_low 4 ALIGNMENT 83 Y12-20o24.p1k chr05 199 287 469444 469532 F 89 97.75 1393 reject_low 3 ALIGNMENT 0 Y12-20o24.p1k chr15 799 286 663808 663807 C 514 0.00 1393 reject_low 13 ALIGNMENT 0 Y12-20o24.p1k chr07 62 206 823487 823486 F 145 0.00 1393 reject_low 6 ALIGNMENT 0 Y12-20o24.p1k chr10 287 799 378355 378354 F 513 0.00 1393 reject_low 5 ALIGNMENT 76 Y12-20o24.p1k chr07 286 207 73822 73901 C 80 98.75 1393 reject_low 11 ALIGNMENT 79 Y12-20o24.p1k chr07 288 198 412289 412379 C 91 95.60 1393 reject_low 2 ALIGNMENT 0 Y12-20o24.p1k chr05 62 198 469444 469443 F 137 0.00 1393 reject_low 3 ALIGNMENT 0 Y12-20o24.p1k chr13 799 287 586630 586629 C 513 0.00 1393 reject_low 8 ALIGNMENT 0 Y12-20o24.p1k chr05 288 799 469532 469531 F 512 0.00 1393 reject_low 3 ALIGNMENT 0 Y12-20o24.p1k chr05 62 205 438695 438694 F 144 0.00 1393 reject_low 9 ALIGNMENT 381 Y12-20p02.q1k chr16 49 775 801198 801929 F 727 85.69 1456 accept_trans 0 ALIGNMENT 47 Y12-20p02.p1k chr06 766 849 137474 137551 F 84 90.48 1192 reject_low 1 ALIGNMENT 805 Y12-20p02.p1k chr16 975 1 810559 811511 C 975 96.31 1192 accept_trans 0 ALIGNMENT 0 Y12-20p02.p1k chr06 62 765 137474 137473 F 704 0.00 1192 reject_low 1 ALIGNMENT 0 Y12-20p03.q1k chr08 792 324 325773 325772 C 469 0.00 1376 reject_low 1 ALIGNMENT 956 Y12-20p03.q1k chr04 1184 30 1182521 1183685 C 1155 94.98 1376 accept 0 ALIGNMENT 112 Y12-20p03.q1k chr08 323 30 325772 326065 C 294 79.93 1376 reject_low 1 ALIGNMENT 797 Y12-20p03.p1k chr04 39 1057 1179881 1180881 F 1019 95.19 1362 accept 0 ALIGNMENT 938 Y12-20p04.q1k chr15 32 1230 927956 929164 F 1199 94.75 1391 accept 0 ALIGNMENT 912 Y12-20p04.p1k chr15 1080 1 931152 932223 C 1080 95.65 1201 accept 0 ALIGNMENT 861 Y12-20p06.p1k chr11 13 1072 265766 266807 F 1060 96.13 1319 accept 0 ALIGNMENT 849 Y12-20p06.q1k chr11 1091 52 269332 270361 C 1040 95.29 1432 accept 0 ALIGNMENT 986 Y12-20p07.q1k chr04 29 1205 416771 417951 F 1177 95.84 1398 accept 0 ALIGNMENT 933 Y12-20p07.p1k chr04 1201 25 420100 421265 C 1177 94.48 1326 accept 0 ALIGNMENT 904 Y12-20p08.p1k chr16 1127 1 866488 867612 C 1127 94.59 1218 accept 0 ALIGNMENT 964 Y12-20p08.q1k chr16 33 1299 863596 864861 F 1267 93.21 1445 accept 0 ALIGNMENT 878 Y12-20p09.p1k chr15 13 1080 945187 946242 F 1068 96.63 1318 accept 0 ALIGNMENT 925 Y12-20p09.q1k chr15 1173 30 948365 949506 C 1144 94.93 1390 accept 0 ALIGNMENT 583 Y12-20p10.p1k chr01 859 50 798 1603 C 810 92.10 1348 reject_low 20 ALIGNMENT 0 Y12-20p10.p1k chr15 658 62 1038 1037 C 597 0.00 1348 reject_low 26 ALIGNMENT 0 Y12-20p10.p1k chr15 704 346 11058 11057 C 359 0.00 1348 reject_low 22 ALIGNMENT 840 Y12-20p10.q1k chr05 38 1061 2397 3403 F 1024 95.41 1468 reject_low 10 ALIGNMENT 0 Y12-20p10.p1k chr16 652 249 7421 7530 C 404 0.00 1348 reject_low 18 ALIGNMENT 829 Y12-20p10.q1k chr12 1051 38 1068270 1069267 C 1014 95.27 1468 reject_low 3 ALIGNMENT 557 Y12-20p10.p1k chr12 859 37 12082 12900 C 823 91.01 1348 reject_low 5,6 ALIGNMENT 594 Y12-20p10.p1k chr04 37 842 1523786 1524594 F 806 92.68 1348 reject_low 2 ALIGNMENT 656 Y12-20p10.p1k chr09 950 37 7700 8602 C 914 92.89 1348 ambiguous_tel 0 ALIGNMENT 829 Y12-20p10.q1k chr15 1051 38 1087897 1088894 C 1014 95.27 1468 reject_low 7 ALIGNMENT 243 Y12-20p10.p1k chr15 345 37 11057 11367 C 309 93.85 1348 reject_low 22 ALIGNMENT 87 Y12-20p10.p1k chr15 653 859 1083721 1083921 F 207 83.09 1348 reject_low 7 ALIGNMENT 839 Y12-20p10.q1k chr08 1061 38 559074 560081 C 1024 95.41 1468 reject_low 11 ALIGNMENT 558 Y12-20p10.p1k chr14 37 859 782463 783281 F 823 91.01 1348 reject_low 21 ALIGNMENT 0 Y12-20p10.p1k chr05 62 704 569450 569449 F 643 0.00 1348 reject_low 8 ALIGNMENT 818 Y12-20p10.q1k chr08 54 1061 2298 3288 F 1008 95.14 1468 reject_low 17 ALIGNMENT 85 Y12-20p10.p1k chr13 57 248 923224 923414 F 192 82.81 1348 reject_low 25 ALIGNMENT 849 Y12-20p10.q1k chr06 38 1061 1587 2593 F 1024 95.70 1468 reject_low 9 ALIGNMENT 864 Y12-20p10.q1k chr10 38 1061 2704 3710 F 1024 96.19 1468 ambiguous_tel 1 ALIGNMENT 0 Y12-20p10.p1k chr15 249 652 1083611 1083720 F 404 0.00 1348 reject_low 7 ALIGNMENT 834 Y12-20p10.q1k chr16 1061 38 944621 945627 C 1024 95.21 1468 reject_low 12 ALIGNMENT 830 Y12-20p10.q1k chr12 38 1011 8085 9046 F 974 96.20 1468 reject_low 6 ALIGNMENT 564 Y12-20p10.p1k chr02 835 37 6627 7422 C 799 91.86 1348 reject_low 4 ALIGNMENT 69 Y12-20p10.p1k chr05 705 835 569450 569575 F 131 87.79 1348 reject_low 8 ALIGNMENT 829 Y12-20p10.q1k chr05 1051 38 573561 574558 C 1014 95.27 1468 reject_low 8 ALIGNMENT 150 Y12-20p10.p1k chr11 468 711 665307 665548 F 244 88.93 1348 reject_low 23 ALIGNMENT 653 Y12-20p10.p1k chr10 950 37 7683 8585 C 914 92.78 1348 ambiguous_tel 1 ALIGNMENT 89 Y12-20p10.p1k chr16 248 57 7531 7723 C 192 83.33 1348 reject_low 18 ALIGNMENT 829 Y12-20p10.q1k chr12 1051 38 1074933 1075930 C 1014 95.27 1468 reject_low 14 ALIGNMENT 829 Y12-20p10.q1k chr04 1051 38 1528732 1529729 C 1014 95.27 1468 reject_low 2 ALIGNMENT 0 Y12-20p10.p1k chr03 62 658 315589 315588 F 597 0.00 1348 reject_low 24 ALIGNMENT 829 Y12-20p10.q1k chr14 38 1051 2333 3330 F 1014 95.27 1468 reject_low 16 ALIGNMENT 829 Y12-20p10.q1k chr16 38 1051 2242 3239 F 1014 95.27 1468 reject_low 18 ALIGNMENT 580 Y12-20p10.p1k chr12 37 859 1063459 1064281 F 823 91.62 1348 reject_low 3 ALIGNMENT 0 Y12-20p10.p1k chr13 249 704 923414 923413 F 456 0.00 1348 reject_low 25 ALIGNMENT 594 Y12-20p10.p1k chr11 835 37 827 1622 C 799 93.12 1348 reject_low 19 ALIGNMENT 829 Y12-20p10.q1k chr07 1051 38 1087638 1088635 C 1014 95.27 1468 reject_low 13 ALIGNMENT 839 Y12-20p10.q1k chr02 38 1061 2750 3757 F 1024 95.41 1468 reject_low 4 ALIGNMENT 829 Y12-20p10.q1k chr13 38 1051 2426 3423 F 1014 95.27 1468 reject_low 15 ALIGNMENT 36 Y12-20p10.p1k chr16 711 653 7363 7420 C 59 88.14 1348 reject_low 18 ALIGNMENT 0 Y12-20p10.p1k chr11 62 467 665307 665306 F 406 0.00 1348 reject_low 23 ALIGNMENT 861 Y12-20p10.q1k chr09 38 1061 2721 3727 F 1024 96.09 1468 ambiguous_tel 0 ALIGNMENT 83 Y12-20p10.p1k chr15 835 659 866 1037 C 177 84.75 1348 reject_low 26 ALIGNMENT 94 Y12-20p10.p1k chr03 659 859 315589 315782 F 201 85.07 1348 reject_low 24 ALIGNMENT 834 Y12-20p10.q1k chr12 38 1061 2550 3556 F 1024 95.21 1468 reject_low 5 ALIGNMENT 90 Y12-20p10.p1k chr15 57 248 1083418 1083610 F 192 83.33 1348 reject_low 7 ALIGNMENT 0 Y12-20p11.q1k chr15 62 571 117702 117701 F 510 0.00 1435 reject_low 16 ALIGNMENT 794 Y12-20p11.p1k chr05 1025 15 140182 141161 C 1011 95.65 1371 accept 0 ALIGNMENT 224 Y12-20p11.q1k chr16 572 902 560478 560806 F 331 91.84 1435 reject_low 4 ALIGNMENT 229 Y12-20p11.q1k chr07 572 901 535215 535542 F 330 92.42 1435 reject_low 2 ALIGNMENT 175 Y12-20p11.q1k chr01 902 572 165830 166163 C 331 86.71 1435 reject_low 18 ALIGNMENT 0 Y12-20p11.q1k chr06 840 861 137907 137906 F 22 0.00 1435 reject_low 21 ALIGNMENT 217 Y12-20p11.q1k chr13 571 885 184169 184481 F 315 92.38 1435 reject_low 8 ALIGNMENT 204 Y12-20p11.q1k chr04 572 885 1095762 1096079 F 314 91.08 1435 reject_low 14 ALIGNMENT 0 Y12-20p11.q1k chr10 861 723 203886 203885 C 139 0.00 1435 reject_low 25 ALIGNMENT 204 Y12-20p11.q1k chr15 572 885 117702 118019 F 314 91.08 1435 reject_low 16 ALIGNMENT 0 Y12-20p11.q1k chr12 571 62 215419 215418 C 510 0.00 1435 reject_low 15 ALIGNMENT 175 Y12-20p11.q1k chr01 902 572 160242 160575 C 331 86.71 1435 reject_low 17 ALIGNMENT 0 Y12-20p11.q1k chr09 571 62 197486 197485 C 510 0.00 1435 reject_low 20 ALIGNMENT 0 Y12-20p11.q1k chr02 62 571 221040 221039 F 510 0.00 1435 reject_low 5 ALIGNMENT 95 Y12-20p11.q1k chr06 624 884 158408 158663 F 261 82.76 1435 reject_low 22 ALIGNMENT 230 Y12-20p11.q1k chr13 902 572 357007 357335 C 331 92.45 1435 reject_low 1 ALIGNMENT 925 Y12-20p11.q1k chr05 30 1317 137680 138975 F 1288 93.40 1435 accept 0 ALIGNMENT 0 Y12-20p11.q1k chr08 571 62 543942 543941 C 510 0.00 1435 reject_low 12 ALIGNMENT 211 Y12-20p11.q1k chr03 572 895 151518 151838 F 324 91.36 1435 reject_low 13 ALIGNMENT 215 Y12-20p11.q1k chr08 885 572 543630 543941 C 314 92.36 1435 reject_low 12 ALIGNMENT 0 Y12-20p11.q1k chr10 62 625 204036 204035 F 564 0.00 1435 reject_low 19 ALIGNMENT 216 Y12-20p11.q1k chr16 902 572 850628 850962 C 331 90.94 1435 reject_low 7 ALIGNMENT 0 Y12-20p11.q1k chr16 62 571 560478 560477 F 510 0.00 1435 reject_low 4 ALIGNMENT 79 Y12-20p11.q1k chr06 572 895 137908 138229 F 324 78.40 1435 reject_low 23 ALIGNMENT 0 Y12-20p11.q1k chr06 62 571 143535 143534 F 510 0.00 1435 reject_low 24 ALIGNMENT 0 Y12-20p11.q1k chr07 62 571 535215 535214 F 510 0.00 1435 reject_low 2 ALIGNMENT 0 Y12-20p11.q1k chr06 62 574 137658 137657 F 513 0.00 1435 reject_low 21 ALIGNMENT 139 Y12-20p11.q1k chr06 575 839 137658 137907 F 265 89.06 1435 reject_low 21 ALIGNMENT 71 Y12-20p11.q1k chr10 722 572 203885 204035 C 151 84.11 1435 reject_low 25 ALIGNMENT 218 Y12-20p11.q1k chr07 885 572 817418 817729 C 314 92.68 1435 reject_low 9 ALIGNMENT 79 Y12-20p11.q1k chr06 572 895 143535 143856 F 324 78.40 1435 reject_low 24 ALIGNMENT 0 Y12-20p11.q1k chr07 62 782 817290 817289 F 721 0.00 1435 reject_low 26 ALIGNMENT 0 Y12-20p11.q1k chr13 571 62 357336 357335 C 510 0.00 1435 reject_low 1 ALIGNMENT 218 Y12-20p11.q1k chr15 572 885 600403 600714 F 314 92.68 1435 reject_low 11 ALIGNMENT 204 Y12-20p11.q1k chr12 885 572 215101 215418 C 314 91.08 1435 reject_low 15 ALIGNMENT 0 Y12-20p11.q1k chr03 62 571 151518 151517 F 510 0.00 1435 reject_low 13 ALIGNMENT 0 Y12-20p11.q1k chr07 571 62 817730 817729 C 510 0.00 1435 reject_low 9 ALIGNMENT 0 Y12-20p11.q1k chr04 62 571 1095762 1095761 F 510 0.00 1435 reject_low 14 ALIGNMENT 0 Y12-20p11.q1k chr06 62 571 137908 137907 F 510 0.00 1435 reject_low 23 ALIGNMENT 0 Y12-20p11.q1k chr14 571 62 96942 96941 C 510 0.00 1435 reject_low 3 ALIGNMENT 39 Y12-20p11.q1k chr07 783 882 817290 817387 F 100 82.00 1435 reject_low 26 ALIGNMENT 176 Y12-20p11.q1k chr10 626 899 204036 204307 F 274 90.88 1435 reject_low 19 ALIGNMENT 219 Y12-20p11.q1k chr02 572 901 221040 221369 F 330 91.52 1435 reject_low 5 ALIGNMENT 218 Y12-20p11.q1k chr15 572 885 594821 595132 F 314 92.68 1435 reject_low 10 ALIGNMENT 0 Y12-20p11.q1k chr10 571 62 204036 204035 C 510 0.00 1435 reject_low 25 ALIGNMENT 0 Y12-20p11.q1k chr15 62 571 600403 600402 F 510 0.00 1435 reject_low 11 ALIGNMENT 0 Y12-20p11.q1k chr13 62 570 184169 184168 F 509 0.00 1435 reject_low 8 ALIGNMENT 157 Y12-20p11.q1k chr09 902 572 197139 197485 C 331 85.20 1435 reject_low 20 ALIGNMENT 0 Y12-20p11.q1k chr01 571 62 166164 166163 C 510 0.00 1435 reject_low 18 ALIGNMENT 0 Y12-20p11.q1k chr01 571 62 160576 160575 C 510 0.00 1435 reject_low 17 ALIGNMENT 0 Y12-20p11.q1k chr06 62 623 158408 158407 F 562 0.00 1435 reject_low 22 ALIGNMENT 0 Y12-20p11.q1k chr15 62 571 594821 594820 F 510 0.00 1435 reject_low 10 ALIGNMENT 0 Y12-20p11.q1k chr15 62 571 123290 123289 F 510 0.00 1435 reject_low 6 ALIGNMENT 0 Y12-20p11.q1k chr16 571 62 850963 850962 C 510 0.00 1435 reject_low 7 ALIGNMENT 216 Y12-20p11.q1k chr15 572 902 123290 123624 F 331 90.94 1435 reject_low 6 ALIGNMENT 227 Y12-20p11.q1k chr14 902 572 96613 96941 C 331 92.15 1435 reject_low 3 ALIGNMENT 924 Y12-20p12.q1k chr10 1189 39 344051 345192 C 1151 94.70 1443 accept 0 ALIGNMENT 676 Y12-20p12.p1k chr10 44 929 339414 340271 F 886 94.70 1401 accept 0 ALIGNMENT 901 Y12-20p13.p1k chr09 1233 1 87738 88956 C 1233 93.43 1278 accept 0 ALIGNMENT 908 Y12-20p13.q1k chr09 31 1033 84195 85206 F 1003 97.51 1371 accept 0 ALIGNMENT 0 Y12-20p14.q1k chr09 293 649 129551 129550 F 357 0.00 1414 reject_low 1 ALIGNMENT 43 Y12-20p14.q1k chr09 30 292 129291 129551 F 263 73.38 1414 reject_low 1 ALIGNMENT 805 Y12-20p14.q1k chr11 30 1087 519982 521039 F 1058 93.38 1414 accept 0 ALIGNMENT 654 Y12-20p14.p1k chr11 971 33 522258 523156 C 939 93.08 1383 accept 0 ALIGNMENT 887 Y12-20p15.q1k chr04 29 1075 846924 847977 F 1047 96.28 1400 accept 0 ALIGNMENT 689 Y12-20p15.p1k chr04 876 40 849793 850622 C 837 95.82 1412 accept 0 ALIGNMENT 725 Y12-20p16.q1k chr13 36 1052 194546 195575 F 1017 91.74 1365 accept_trans 0 ALIGNMENT 439 Y12-20p16.p1k chr13 790 72 203699 204404 C 719 88.87 1449 accept_trans 0 ALIGNMENT 753 Y12-20p17.p1k chr14 3 983 266661 267618 F 981 95.82 1284 accept 0 ALIGNMENT 854 Y12-20p17.q1k chr14 1049 29 270181 271217 C 1021 96.77 1349 accept 0 ALIGNMENT 324 Y12-20p18.q1k chr13 726 185 128381 128912 C 542 88.38 1447 accept 0 ALIGNMENT 0 Y12-20p19.q1k chr11 507 656 509 508 F 150 0.00 1438 reject_low 7 ALIGNMENT 21 Y12-20p19.q1k chr13 407 361 924345 924391 C 47 93.62 1438|1,0 reject_low 16 ALIGNMENT 61 Y12-20p19.q1k chr12 499 411 1064592 1064682 C 89 91.01 1438 reject_low 11 ALIGNMENT 45 Y12-20p19.q1k chr14 406 499 7019 7114 F 94 84.04 1438 reject_low 8 ALIGNMENT 58 Y12-20p19.q1k chr12 406 506 11681 11785 F 101 88.12 1438|0,1 reject_low 10 ALIGNMENT 0 Y12-20p19.q1k chr08 656 314 562457 562456 C 343 0.00 1438 ambiguous_tel 1 ALIGNMENT 0 Y12-20p19.q1k chr06 507 506 5230 5404 F 0 0.00 1438 reject_low 5 ALIGNMENT 50 Y12-20p19.q1k chr06 407 506 5125 5229 F 100 85.00 1438 reject_low 5 ALIGNMENT 21 Y12-20p19.q1k chr14 407 361 784284 784330 C 47 93.62 1438|1,0 reject_low 15 ALIGNMENT 0 Y12-20p19.q1k chr13 482 503 6216 6215 F 22 0.00 1438 reject_low 4 ALIGNMENT 0 Y12-20p19.q1k chr14 503 500 783407 783591 C 4 0.00 1438 reject_low 15 ALIGNMENT 0 Y12-20p19.q1k chr14 500 503 7115 7299 F 4 0.00 1438 reject_low 8 ALIGNMENT 58 Y12-20p19.q1k chr13 506 406 923839 923943 C 101 88.12 1438|1,1 reject_low 16 ALIGNMENT 82 Y12-20p19.q1k chr12 684 506 1064226 1064404 C 179 84.36 1438 reject_low 11 ALIGNMENT 172 Y12-20p19.q1k chr13 504 921 6216 6625 F 418 83.01 1438 reject_low 4 ALIGNMENT 0 Y12-20p19.q1k chr13 505 506 923664 923839 C 0 0.00 1438 reject_low 16 ALIGNMENT 0 Y12-20p19.q1k chr13 656 637 923536 923535 C 20 0.00 1438 reject_low 16 ALIGNMENT 50 Y12-20p19.q1k chr14 499 406 783592 783685 C 94 87.23 1438|0,1 reject_low 15 ALIGNMENT 25 Y12-20p19.q1k chr05 388 429 6341 6383 F 42 90.48 1438 ambiguous_tel 0 ALIGNMENT 0 Y12-20p19.q1k chr15 507 507 548 722 F 1 0.00 1438 reject_low 14 ALIGNMENT 0 Y12-20p19.q1k chr14 406 407 783685 784284 C 0 0.00 1438 reject_low 15 ALIGNMENT 0 Y12-20p19.q1k chr05 430 534 6384 6375 F 105 0.00 1438 ambiguous_tel 0 ALIGNMENT 0 Y12-20p19.q1k chr03 506 505 798 971 F 0 0.00 1438 reject_low 13 ALIGNMENT 0 Y12-20p19.q1k chr09 500 503 7473 7655 F 4 0.00 1438 reject_low 12 ALIGNMENT 87 Y12-20p19.q1k chr14 684 504 783226 783406 C 181 85.64 1438 reject_low 15 ALIGNMENT 0 Y12-20p19.q1k chr12 506 505 11785 11958 F 0 0.00 1438 reject_low 10 ALIGNMENT 62 Y12-20p19.q1k chr03 504 684 970 1149 F 181 80.66 1438|2,0 reject_low 13 ALIGNMENT 0 Y12-20p19.q1k chr13 406 407 923943 924345 C 0 0.00 1438 reject_low 16 ALIGNMENT 87 Y12-20p19.q1k chr12 504 684 11957 12137 F 181 85.64 1438|2,0 reject_low 10 ALIGNMENT 63 Y12-20p19.q1k chr11 391 506 390 509 F 116 87.07 1438 reject_low 7 ALIGNMENT 55 Y12-20p19.q1k chr09 499 406 439378 439475 C 94 88.30 1438 reject_low 6 ALIGNMENT 0 Y12-20p19.q1k chr04 656 500 1524922 1524921 C 157 0.00 1438 reject_low 9 ALIGNMENT 172 Y12-20p19.q1k chr02 921 504 812092 812501 C 418 83.01 1438 reject_low 3 ALIGNMENT 79 Y12-20p19.q1k chr09 504 684 7656 7836 F 181 83.43 1438 reject_low 12 ALIGNMENT 58 Y12-20p19.q1k chr13 636 504 923535 923665 C 133 84.96 1438|0,2 reject_low 16 ALIGNMENT 56 Y12-20p19.q1k chr04 499 406 1524921 1525017 C 94 88.30 1438 reject_low 9 ALIGNMENT 284 Y12-20p19.q1k chr05 535 957 6376 6794 F 423 91.02 1438 ambiguous_tel 0 ALIGNMENT 59 Y12-20p19.q1k chr03 406 506 695 798 F 101 88.12 1438|0,1 reject_low 13 ALIGNMENT 0 Y12-20p19.q1k chr04 482 503 776 775 F 22 0.00 1438 ambiguous_tel 2 ALIGNMENT 0 Y12-20p19.q1k chr12 505 500 1064405 1064591 C 6 0.00 1438 reject_low 11 ALIGNMENT 179 Y12-20p19.q1k chr04 504 921 776 1188 F 418 83.25 1438 ambiguous_tel 2 ALIGNMENT 66 Y12-20p19.q1k chr15 508 684 723 898 F 177 81.92 1438 reject_low 14 ALIGNMENT 61 Y12-20p19.q1k chr09 411 499 7382 7472 F 89 91.01 1438 reject_low 12 ALIGNMENT 182 Y12-20p19.q1k chr06 507 954 5405 5848 F 448 82.37 1438 reject_low 5 ALIGNMENT 180 Y12-20p19.q1k chr14 504 921 7300 7712 F 418 83.25 1438 reject_low 8 ALIGNMENT 208 Y12-20p19.q1k chr09 921 504 438780 439193 C 418 85.41 1438 reject_low 6 ALIGNMENT 0 Y12-20p19.q1k chr02 503 482 812502 812501 C 22 0.00 1438 reject_low 3 ALIGNMENT 0 Y12-20p19.q1k chr09 503 500 439194 439377 C 4 0.00 1438 reject_low 6 ALIGNMENT 53 Y12-20p19.q1k chr15 406 506 444 547 F 101 86.14 1438 reject_low 14 ALIGNMENT 26 Y12-20p19.q1k chr08 313 133 562456 562640 C 181 85.08 1438 ambiguous_tel 1 ALIGNMENT 991 Y12-20p20.q1k chr05 1191 31 345902 347071 C 1161 96.38 1351 accept 0 ALIGNMENT 797 Y12-20p20.p1k chr05 1 946 341345 342271 F 946 96.41 1255 accept 0 ALIGNMENT 847 Y12-20p22.q1k chr07 2 1004 446245 447254 F 1003 95.51 1256 accept 0 ALIGNMENT 0 Y12-20p23.q1k chr12 952 953 459823 459835 F 2 0.00 1289 reject_bad_break 0 ALIGNMENT 708 Y12-20p23.p1k chr12 863 9 462116 462961 C 855 95.32 1158 reject_bad_break 0 ALIGNMENT 109 Y12-20p23.q1k chr12 803 922 472464 472582 F 120 97.50 1289 reject_low 5 ALIGNMENT 708 Y12-20p23.p1k chr12 863 9 452979 453824 C 855 95.32 1158 reject_low 1 ALIGNMENT 26 Y12-20p23.q1k chr12 954 1019 459836 459905 F 66 83.33 1289 reject_bad_break 0 ALIGNMENT 834 Y12-20p23.q1k chr12 33 922 468042 468930 F 890 99.21 1289 reject_low 2 ALIGNMENT 853 Y12-20p23.q1k chr12 33 951 458905 459822 F 919 99.02 1289 reject_bad_break 0 ALIGNMENT 109 Y12-20p23.q1k chr12 803 922 485696 485814 F 120 97.50 1289 reject_low 7 ALIGNMENT 109 Y12-20p23.q1k chr12 803 922 482044 482162 F 120 97.50 1289 reject_low 6 ALIGNMENT 0 Y12-20p23.q1k chr12 62 802 489348 489347 F 741 0.00 1289 reject_low 4 ALIGNMENT 0 Y12-20p23.q1k chr06 435 62 31730 31729 C 374 0.00 1289 reject_low 3 ALIGNMENT 94 Y12-20p23.q1k chr06 543 436 31622 31729 C 108 98.15 1289 reject_low 3 ALIGNMENT 0 Y12-20p23.q1k chr12 62 802 472464 472463 F 741 0.00 1289 reject_low 5 ALIGNMENT 112 Y12-20p23.q1k chr12 803 928 489348 489472 F 126 96.83 1289 reject_low 4 ALIGNMENT 0 Y12-20p23.q1k chr06 822 544 31623 31622 C 279 0.00 1289 reject_low 3 ALIGNMENT 0 Y12-20p23.q1k chr12 62 802 485696 485695 F 741 0.00 1289 reject_low 7 ALIGNMENT 0 Y12-20p23.q1k chr12 62 802 482044 482043 F 741 0.00 1289 reject_low 6 ALIGNMENT 774 Y12-2a01.q1k chr12 31 1018 457662 458642 F 988 94.43 1266 accept 0 ALIGNMENT 246 Y12-2a01.p1k chr12 648 268 489760 490140 C 381 87.66 1199 reject_low 3 ALIGNMENT 774 Y12-2a01.q1k chr12 31 1018 466799 467779 F 988 94.43 1266 reject_low 1 ALIGNMENT 271 Y12-2a01.p1k chr12 676 268 460901 461309 C 409 88.26 1199 accept 0 ALIGNMENT 271 Y12-2a01.p1k chr12 676 268 451764 452172 C 409 88.26 1199 reject_low 2 ALIGNMENT 547 Y12-2a03.q1k chr14 33 966 681599 682525 F 934 88.01 1345 accept 0 ALIGNMENT 674 Y12-2a04.q1k chr09 47 943 157997 158882 F 897 93.09 1416 accept 0 ALIGNMENT 575 Y12-2a08.p1k chr10 1044 265 211087 211851 C 780 93.46 1267 accept 0 ALIGNMENT 1030 Y12-2a08.q1k chr10 36 1233 208270 209462 F 1198 96.66 1283 accept 0 ALIGNMENT 382 Y12-2a09.p1k chr07 267 663 859917 860313 F 397 99.24 1269 accept 0 ALIGNMENT 975 Y12-2a09.q1k chr07 1242 45 863719 864914 C 1198 94.99 1438 accept 0 ALIGNMENT 1021 Y12-2a10.q1k chr04 1232 37 302474 303670 C 1196 95.82 1347 accept 0 ALIGNMENT 763 Y12-2a10.p1k chr04 46 1054 299663 300663 F 1009 92.96 1228 accept 0 ALIGNMENT 950 Y12-2a12.q1k chr02 1170 36 757201 758318 C 1135 96.12 1330 accept 0 ALIGNMENT 700 Y12-2a12.p1k chr02 249 1083 753633 754458 F 835 96.41 1205 accept 0 ALIGNMENT 1018 Y12-2a13.q1k chr02 1195 42 323135 324301 C 1154 96.79 1324 accept 0 ALIGNMENT 499 Y12-2a13.p1k chr02 27 753 319681 320410 F 727 90.65 1201 accept 0 ALIGNMENT 792 Y12-2a17.p1k chr04 1216 145 685900 686970 C 1072 92.72 1217 accept_chi 1 ALIGNMENT 916 Y12-2a17.q1k chr05 1074 30 34861 35921 C 1045 96.84 1262 accept_chi 0 ALIGNMENT 684 Y12-2a18.p1k chr11 167 1072 293556 294452 F 906 93.60 1219 accept 0 ALIGNMENT 939 Y12-2a18.q1k chr11 1165 37 296144 297266 C 1129 95.31 1250 accept 0 ALIGNMENT 584 Y12-2a20.p1k chr07 256 1044 627143 627920 F 789 93.92 1255 accept 0 ALIGNMENT 964 Y12-2a20.q1k chr07 1204 30 630895 632084 C 1175 95.57 1213 accept 0 ALIGNMENT 755 Y12-2a21.p1k chr04 263 1125 230646 231508 F 863 96.41 1134 accept 0 ALIGNMENT 915 Y12-2a21.q1k chr04 1110 30 233923 235008 C 1081 96.11 1260 accept 0 ALIGNMENT 1039 Y12-2a22.q1k chr14 1185 37 209375 210525 C 1149 97.21 1214 accept 0 ALIGNMENT 782 Y12-2a22.p1k chr14 87 1126 206524 207561 F 1040 93.17 1126 accept 0 ALIGNMENT 890 Y12-2a24.q1k chr12 1053 39 868895 869906 C 1015 97.44 1107 accept 0 ALIGNMENT 580 Y12-2a24.p1k chr12 260 935 867075 867743 F 676 97.63 1119 accept 0 ALIGNMENT 715 Y12-2b01.q1k chr12 6 815 451952 452743 F 810 97.65 1198 accept 0 ALIGNMENT 0 Y12-2b01.q1k chr12 630 651 490543 490542 F 22 0.00 1198 reject_low 2 ALIGNMENT 613 Y12-2b01.q1k chr12 6 629 489920 490543 F 624 99.52 1198 reject_low 2 ALIGNMENT 715 Y12-2b01.q1k chr12 6 815 461089 461880 F 810 97.65 1198 accept 1 ALIGNMENT 136 Y12-2b02.p1k chr07 32 258 1018374 1018600 F 227 87.22 936 accept 0 ALIGNMENT 677 Y12-2b02.q1k chr07 891 60 1022423 1023239 C 832 95.43 1340 accept 0 ALIGNMENT 227 Y12-2b03.p1k chr16 389 819 724677 725094 F 431 87.01 1269 accept 0 ALIGNMENT 709 Y12-2b03.q1k chr16 1038 45 727795 728790 C 994 92.96 1332 accept 0 ALIGNMENT 0 Y12-2b04.q1k chr08 62 829 365360 365359 F 768 0.00 1339 reject_low 7 ALIGNMENT 0 Y12-2b04.q1k chr15 62 856 579518 579517 F 795 0.00 1339 reject_low 11 ALIGNMENT 37 Y12-2b04.q1k chr07 829 893 529994 530058 F 65 89.23 1339 reject_low 2 ALIGNMENT 0 Y12-2b04.q1k chr07 312 62 378064 378063 C 251 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-2b04.q1k chr07 785 337 378041 378040 C 449 0.00 1339 reject_low 1 ALIGNMENT 22 Y12-2b04.q1k chr11 849 872 561409 561432 F 24 100.00 1339 reject_low 13 ALIGNMENT 0 Y12-2b04.q1k chr07 840 62 394483 394482 C 779 0.00 1339 reject_low 12 ALIGNMENT 0 Y12-2b04.q1k chr07 62 828 529994 529993 F 767 0.00 1339 reject_low 2 ALIGNMENT 26 Y12-2b04.q1k chr13 874 834 209871 209911 C 41 92.68 1339 reject_low 6 ALIGNMENT 0 Y12-2b04.q1k chr15 828 62 227340 227339 C 767 0.00 1339 reject_low 3 ALIGNMENT 22 Y12-2b04.q1k chr07 890 829 378029 378090 C 62 82.26 1339 reject_low 5 ALIGNMENT 0 Y12-2b04.q1k chr13 833 62 209912 209911 C 772 0.00 1339 reject_low 6 ALIGNMENT 21 Y12-2b04.q1k chr07 863 841 394460 394482 C 23 100.00 1339 reject_low 12 ALIGNMENT 25 Y12-2b04.q1k chr13 880 846 354195 354229 C 35 94.29 1339 reject_low 9 ALIGNMENT 20 Y12-2b04.q1k chr10 877 844 138881 138915 C 34 91.18 1339 reject_low 14 ALIGNMENT 0 Y12-2b04.q1k chr13 845 62 354230 354229 C 784 0.00 1339 reject_low 9 ALIGNMENT 35 Y12-2b04.q1k chr15 891 829 227277 227339 C 63 88.89 1339 reject_low 3 ALIGNMENT 20 Y12-2b04.q1k chr09 887 847 153581 153621 C 41 85.37 1339 reject_low 10 ALIGNMENT 0 Y12-2b04.q1k chr09 846 62 153622 153621 C 785 0.00 1339 reject_low 10 ALIGNMENT 0 Y12-2b04.q1k chr10 843 62 138916 138915 C 782 0.00 1339 reject_low 14 ALIGNMENT 518 Y12-2b04.p1k chr05 937 262 223004 223664 C 676 93.34 1239 accept 0 ALIGNMENT 29 Y12-2b04.q1k chr08 829 872 252866 252909 F 44 93.18 1339 reject_low 4 ALIGNMENT 21 Y12-2b04.q1k chr15 857 881 579518 579542 F 25 96.00 1339 reject_low 11 ALIGNMENT 24 Y12-2b04.q1k chr16 832 869 187342 187379 F 38 92.11 1339 reject_low 8 ALIGNMENT 0 Y12-2b04.q1k chr08 62 828 252866 252865 F 767 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-2b04.q1k chr07 828 62 378091 378090 C 767 0.00 1339 reject_low 5 ALIGNMENT 0 Y12-2b04.q1k chr11 62 848 561409 561408 F 787 0.00 1339 reject_low 13 ALIGNMENT 20 Y12-2b04.q1k chr07 336 313 378040 378063 C 24 95.83 1339 reject_low 1 ALIGNMENT 24 Y12-2b04.q1k chr08 830 875 365360 365405 F 46 89.13 1339 reject_low 7 ALIGNMENT 0 Y12-2b04.q1k chr16 62 831 187342 187341 F 770 0.00 1339 reject_low 8 ALIGNMENT 890 Y12-2b04.q1k chr05 27 1149 219139 220251 F 1123 94.92 1339 accept 0 ALIGNMENT 739 Y12-2b05.p1k chr15 265 1139 135615 136486 F 875 95.77 1214 accept 0 ALIGNMENT 991 Y12-2b05.q1k chr15 1295 36 138754 140014 C 1260 94.29 1328 accept 0 ALIGNMENT 560 Y12-2b06.q1k chr12 1239 544 489845 490543 C 696 93.68 1333 reject_low 3 ALIGNMENT 1076 Y12-2b06.q1k chr12 1239 40 451877 453079 C 1200 96.75 1333 reject_low 2 ALIGNMENT 873 Y12-2b06.p1k chr12 44 1102 457851 458889 F 1059 96.13 1228 accept 0 ALIGNMENT 1076 Y12-2b06.q1k chr12 1239 40 461014 462216 C 1200 96.75 1333 accept 0 ALIGNMENT 873 Y12-2b06.p1k chr12 44 1102 466988 468026 F 1059 96.13 1228 reject_low 1 ALIGNMENT 0 Y12-2b06.q1k chr12 543 62 490544 490543 C 482 0.00 1333 reject_low 3 ALIGNMENT 1005 Y12-2b08.q1k chr04 32 1244 823521 824730 F 1213 95.80 1280 accept 0 ALIGNMENT 441 Y12-2b08.p1k chr04 883 269 827048 827658 C 615 91.54 1271 accept 0 ALIGNMENT 871 Y12-2b09.q1k chr03 32 1156 295920 297054 F 1125 95.02 1343 accept 0 ALIGNMENT 462 Y12-2b09.p1k chr03 1022 270 299293 300058 C 753 88.05 1224 accept 0 ALIGNMENT 681 Y12-2b10.p1k chr16 254 1058 9201 10010 F 805 95.90 1228 ambiguous_tel 1 ALIGNMENT 684 Y12-2b10.p1k chr15 1058 254 1081132 1081940 C 805 96.15 1228 ambiguous_tel 0 ALIGNMENT 711 Y12-2b10.p1k chr13 1058 254 920946 921748 C 805 97.27 1228 reject_low 2 ALIGNMENT 919 Y12-2b10.q1k chr16 1214 39 13875 15084 C 1176 94.05 1327 ambiguous_tel 1 ALIGNMENT 933 Y12-2b10.q1k chr15 39 1214 1076052 1077260 F 1176 94.47 1327 ambiguous_tel 0 ALIGNMENT 993 Y12-2b11.q1k chr02 36 1189 466168 467346 F 1154 95.75 1283 accept 0 ALIGNMENT 964 Y12-2b11.p1k chr02 1154 17 469616 470770 C 1138 95.87 1181 accept 0 ALIGNMENT 0 Y12-2b12.p1k chr08 861 272 169174 169173 C 590 0.00 1205 reject_low 2 ALIGNMENT 23 Y12-2b12.p1k chr08 271 229 169173 169215 C 43 88.37 1205 reject_low 2 ALIGNMENT 29 Y12-2b12.p1k chr04 231 271 747506 747546 F 41 97.56 1205 reject_low 1 ALIGNMENT 22 Y12-2b12.p1k chr05 266 231 377447 377482 C 36 94.44 1205 reject_low 4 ALIGNMENT 0 Y12-2b12.p1k chr13 231 62 588632 588631 C 170 0.00 1205 reject_low 3 ALIGNMENT 1061 Y12-2b12.q1k chr09 1240 36 52911 54109 C 1205 96.18 1336 accept 0 ALIGNMENT 22 Y12-2b12.p1k chr13 271 232 588592 588631 C 40 92.50 1205 reject_low 3 ALIGNMENT 0 Y12-2b12.p1k chr05 861 267 377448 377447 C 595 0.00 1205 reject_low 4 ALIGNMENT 0 Y12-2b12.p1k chr13 861 272 588593 588592 C 590 0.00 1205 reject_low 3 ALIGNMENT 986 Y12-2b12.p1k chr09 18 1204 49286 50461 F 1187 95.11 1205 accept 0 ALIGNMENT 0 Y12-2b12.p1k chr08 228 62 169216 169215 C 167 0.00 1205 reject_low 2 ALIGNMENT 0 Y12-2b12.p1k chr04 62 230 747506 747505 F 169 0.00 1205 reject_low 1 ALIGNMENT 0 Y12-2b12.p1k chr04 272 861 747546 747545 F 590 0.00 1205 reject_low 1 ALIGNMENT 0 Y12-2b12.p1k chr05 230 62 377483 377482 C 169 0.00 1205 reject_low 4 ALIGNMENT 973 Y12-2b13.p1k chr11 21 1222 337974 339163 F 1202 95.51 1228 accept 0 ALIGNMENT 877 Y12-2b13.q1k chr11 1034 39 341955 342962 C 996 97.49 1232 accept 0 ALIGNMENT 1035 Y12-2b15.q1k chr04 37 1232 408875 410061 F 1196 96.57 1236 accept 0 ALIGNMENT 686 Y12-2b15.p1k chr04 1193 256 413251 414165 C 938 93.60 1241 accept 0 ALIGNMENT 948 Y12-2b16.p1k chr05 1181 22 374441 375611 C 1160 95.26 1181 accept 0 ALIGNMENT 955 Y12-2b16.q1k chr05 41 1140 369284 370384 F 1100 96.09 1248 accept 0 ALIGNMENT 960 Y12-2b17.p1k chr16 1108 18 68542 69633 C 1091 96.98 1187 accept 0 ALIGNMENT 1016 Y12-2b17.q1k chr16 35 1204 65518 66699 F 1170 96.07 1228 accept 0 ALIGNMENT 967 Y12-2b18.q1k chr10 1209 35 525251 526428 C 1175 95.57 1244 accept 0 ALIGNMENT 939 Y12-2b18.p1k chr10 43 1135 522320 523412 F 1093 95.88 1180 accept 0 ALIGNMENT 766 Y12-2b20.p1k chr16 34 1141 125597 126698 F 1108 91.43 1162 accept 0 ALIGNMENT 961 Y12-2b20.q1k chr16 1223 36 128741 129938 C 1188 94.44 1226 accept 0 ALIGNMENT 900 Y12-2b21.q1k chr07 29 1139 495957 497060 F 1111 95.50 1221 accept 0 ALIGNMENT 728 Y12-2b21.p1k chr07 1113 258 499959 500824 C 856 96.50 1117 accept 0 ALIGNMENT 944 Y12-2b22.p1k chr10 1136 20 719158 720265 C 1117 96.24 1136 accept 0 ALIGNMENT 927 Y12-2b23.q1k chr07 33 1096 391823 392889 F 1064 97.09 1109 accept 0 ALIGNMENT 806 Y12-2b23.p1k chr07 1040 72 395256 396220 C 969 95.36 1101 accept 0 ALIGNMENT 934 Y12-2b24.q1k chr16 32 1084 342027 343071 F 1053 97.53 1090 accept 0 ALIGNMENT 610 Y12-2b24.p1k chr16 985 264 345422 346129 C 722 96.95 1121 accept 0 ALIGNMENT 109 Y12-2c01.p1k vc_7 393 656 446 705 F 264 81.82 1203 reject_vc 1 ALIGNMENT 109 Y12-2c01.p1k vc_7 393 656 13908 14167 F 264 81.82 1203 reject_vc 2 ALIGNMENT 114 Y12-2c01.p1k vc_5 670 393 4406 4679 C 278 81.65 1203 reject_vc 0 ALIGNMENT 0 Y12-2c03.p1k chr13 246 263 739968 739985 F 18 0.00 1180 accept 0 ALIGNMENT 892 Y12-2c03.q1k chr13 1072 35 743765 744821 C 1038 95.95 1384 accept 0 ALIGNMENT 768 Y12-2c03.p1k chr13 264 1180 739986 740904 F 917 95.53 1180 accept 0 ALIGNMENT 20 Y12-2c03.p1k chr13 178 245 739900 739967 F 68 76.47 1180 accept 0 ALIGNMENT 249 Y12-2c04.p1k chr02 823 437 80402 80784 C 387 90.18 1228 accept 0 ALIGNMENT 393 Y12-2c04.q1k chr02 44 671 75932 76554 F 628 88.22 1606 accept 0 ALIGNMENT 994 Y12-2c05.q1k chr08 34 1165 248022 249168 F 1132 97.35 1380 accept 0 ALIGNMENT 700 Y12-2c05.p1k chr08 1098 261 251913 252746 C 838 95.94 1231 accept 0 ALIGNMENT 959 Y12-2c07.p1k chr14 1120 25 157784 158895 C 1096 96.99 1188 accept 0 ALIGNMENT 870 Y12-2c07.q1k chr14 38 1044 153851 154870 F 1007 96.92 1285 accept 0 ALIGNMENT 974 Y12-2c08.q1k chr14 1176 36 159668 160826 C 1141 96.76 1277 accept 0 ALIGNMENT 946 Y12-2c08.p1k chr14 19 1204 156645 157844 F 1186 95.03 1204 accept 0 ALIGNMENT 132 Y12-2c09.p1k chr04 482 656 340627 340801 F 175 92.00 1246 reject_low 2 ALIGNMENT 957 Y12-2c09.q1k chr05 41 1155 252329 253451 F 1115 95.87 1480 accept_chi 0 ALIGNMENT 0 Y12-2c09.p1k chr04 657 854 340801 340800 F 198 0.00 1246 reject_low 2 ALIGNMENT 951 Y12-2c09.p1k chr12 1212 15 898097 899293 C 1198 94.41 1246 accept_chi 1 ALIGNMENT 0 Y12-2c09.p1k chr04 62 481 340627 340626 F 420 0.00 1246 reject_low 2 ALIGNMENT 878 Y12-2c11.q1k chr13 1057 38 566978 568008 C 1020 95.98 1282 accept 0 ALIGNMENT 979 Y12-2c11.p1k chr13 21 1210 563208 564400 F 1190 95.21 1210 accept 0 ALIGNMENT 0 Y12-2c12.p1k chr06 62 151 31622 31621 F 90 0.00 1195 reject_low 2 ALIGNMENT 930 Y12-2c12.p1k chr12 1177 25 458392 459543 C 1153 95.40 1195 accept 0 ALIGNMENT 0 Y12-2c12.p1k chr06 260 774 31729 31728 F 515 0.00 1195 reject_low 2 ALIGNMENT 94 Y12-2c12.p1k chr06 152 259 31622 31729 F 108 98.15 1195 reject_low 2 ALIGNMENT 1037 Y12-2c12.q1k chr12 37 1189 462733 463895 F 1153 97.31 1209 accept 1 ALIGNMENT 1037 Y12-2c12.q1k chr12 37 1189 453596 454758 F 1153 97.31 1209 accept 0 ALIGNMENT 930 Y12-2c12.p1k chr12 1177 25 467529 468680 C 1153 95.40 1195 accept 1 ALIGNMENT 1022 Y12-2c14.p1k chr13 1194 20 580316 581503 C 1175 96.85 1198 accept 0 ALIGNMENT 951 Y12-2c14.q1k chr13 34 1120 576484 577582 F 1087 96.87 1240 accept 0 ALIGNMENT 945 Y12-2c15.q1k chr02 1198 42 686544 687718 C 1157 94.55 1390 accept 0 ALIGNMENT 1027 Y12-2c15.p1k chr02 19 1190 683005 684185 F 1172 96.42 1222 accept 0 ALIGNMENT 989 Y12-2c16.q1k chr12 35 1174 702379 703520 F 1140 95.96 1308 accept 0 ALIGNMENT 939 Y12-2c16.p1k chr12 1206 24 705820 707031 C 1183 93.74 1206 accept 0 ALIGNMENT 906 Y12-2c17.p1k chr13 1104 23 125136 126237 C 1082 95.66 1187 accept 0 ALIGNMENT 988 Y12-2c17.q1k chr13 34 1193 121042 122211 F 1160 95.86 1316 accept 0 ALIGNMENT 951 Y12-2c18.q1k chr04 1155 37 1002639 1003762 C 1119 95.26 1244 accept 0 ALIGNMENT 1023 Y12-2c18.p1k chr04 18 1190 998751 999930 F 1173 96.59 1200 accept 0 ALIGNMENT 1005 Y12-2c21.q1k chr04 39 1299 241334 242578 F 1261 94.92 1319 accept 0 ALIGNMENT 722 Y12-2c21.p1k chr04 1150 264 244663 245546 C 887 95.15 1150 accept 0 ALIGNMENT 721 Y12-2c22.p1k chr15 288 1133 348786 349624 F 846 96.57 1186 accept_chi 1 ALIGNMENT 1025 Y12-2c22.q1k chr10 1193 34 83851 85014 C 1160 97.07 1194 accept_chi 0 ALIGNMENT 1094 Y12-2c23.q1k chr12 36 1237 453285 454489 F 1202 97.50 1237 accept 0 ALIGNMENT 620 Y12-2c23.p1k chr12 979 285 465959 466649 C 695 97.12 1202 accept 1 ALIGNMENT 620 Y12-2c23.p1k chr12 979 285 456822 457512 C 695 97.12 1202 accept 0 ALIGNMENT 1094 Y12-2c23.q1k chr12 36 1237 462422 463626 F 1202 97.50 1237 accept 1 ALIGNMENT 844 Y12-2c24.q1k chr07 29 988 390180 391130 F 960 97.40 1192 accept 0 ALIGNMENT 0 Y12-2d01.p1k chr05 739 418 448981 448980 C 322 0.00 1220 reject_low 8 ALIGNMENT 0 Y12-2d01.p1k chr16 418 739 56788 56787 F 322 0.00 1220 reject_low 11 ALIGNMENT 0 Y12-2d01.p1k chr07 418 739 535546 535545 F 322 0.00 1220 reject_low 5 ALIGNMENT 104 Y12-2d01.p1k chr13 272 397 184356 184481 F 126 96.03 1220 reject_low 19 ALIGNMENT 0 Y12-2d01.p1k chr02 418 739 221373 221372 F 322 0.00 1220 reject_low 17 ALIGNMENT 126 Y12-2d01.p1k chr11 417 272 517095 517240 C 146 97.26 1220 reject_low 2 ALIGNMENT 0 Y12-2d01.p1k chr14 739 418 102193 102192 C 322 0.00 1220 reject_low 10 ALIGNMENT 61 Y12-2d01.p1k chr05 410 294 431493 431608 C 117 86.32 1220 accept 0 ALIGNMENT 0 Y12-2d01.p1k chr01 739 418 165828 165827 C 322 0.00 1220 reject_low 7 ALIGNMENT 120 Y12-2d01.p1k chr16 272 417 56643 56788 F 146 95.89 1220 reject_low 11 ALIGNMENT 0 Y12-2d01.p1k chr13 739 398 378305 378304 C 342 0.00 1220 reject_low 21 ALIGNMENT 0 Y12-2d01.p1k chr13 418 739 196668 196667 F 322 0.00 1220 reject_low 16 ALIGNMENT 123 Y12-2d01.p1k chr07 272 417 535401 535546 F 146 96.58 1220 reject_low 5 ALIGNMENT 120 Y12-2d01.p1k chr01 417 272 165827 165972 C 146 95.89 1220 reject_low 7 ALIGNMENT 0 Y12-2d01.p1k chr13 739 418 357005 357004 C 322 0.00 1220 reject_low 3 ALIGNMENT 0 Y12-2d01.p1k chr11 739 418 517096 517095 C 322 0.00 1220 reject_low 2 ALIGNMENT 117 Y12-2d01.p1k chr16 272 417 560664 560809 F 146 95.21 1220 reject_low 12 ALIGNMENT 0 Y12-2d01.p1k chr07 418 739 932022 932021 F 322 0.00 1220 reject_low 14 ALIGNMENT 0 Y12-2d01.p1k chr02 418 739 226955 226954 F 322 0.00 1220 reject_low 1 ALIGNMENT 120 Y12-2d01.p1k chr14 417 272 102192 102337 C 146 95.89 1220 reject_low 10 ALIGNMENT 104 Y12-2d01.p1k chr08 397 272 543630 543755 C 126 96.03 1220 reject_low 18 ALIGNMENT 0 Y12-2d01.p1k chr01 739 418 160240 160239 C 322 0.00 1220 reject_low 6 ALIGNMENT 0 Y12-2d01.p1k chr14 739 418 96611 96610 C 322 0.00 1220 reject_low 9 ALIGNMENT 104 Y12-2d01.p1k chr13 397 272 378304 378429 C 126 96.03 1220 reject_low 21 ALIGNMENT 114 Y12-2d01.p1k chr07 272 417 535956 536101 F 146 94.52 1220 reject_low 13 ALIGNMENT 114 Y12-2d01.p1k chr10 272 417 472569 472714 F 146 94.52 1220 reject_low 15 ALIGNMENT 0 Y12-2d01.p1k chr16 418 739 560809 560808 F 322 0.00 1220 reject_low 12 ALIGNMENT 454 Y12-2d01.p1k chr05 1068 418 430819 431458 C 651 92.17 1220 accept 0 ALIGNMENT 120 Y12-2d01.p1k chr05 417 272 448980 449125 C 146 95.89 1220 reject_low 8 ALIGNMENT 0 Y12-2d01.p1k chr08 739 398 543631 543630 C 342 0.00 1220 reject_low 18 ALIGNMENT 104 Y12-2d01.p1k chr13 397 272 372716 372841 C 126 96.03 1220 reject_low 20 ALIGNMENT 120 Y12-2d01.p1k chr14 417 272 96610 96755 C 146 95.89 1220 reject_low 9 ALIGNMENT 0 Y12-2d01.p1k chr10 418 739 472714 472713 F 322 0.00 1220 reject_low 15 ALIGNMENT 114 Y12-2d01.p1k chr13 272 417 196523 196668 F 146 94.52 1220 reject_low 16 ALIGNMENT 126 Y12-2d01.p1k chr13 417 272 362586 362731 C 146 97.26 1220 reject_low 4 ALIGNMENT 0 Y12-2d01.p1k chr10 418 739 478298 478297 F 322 0.00 1220 reject_low 22 ALIGNMENT 0 Y12-2d01.p1k chr13 398 739 184481 184480 F 342 0.00 1220 reject_low 19 ALIGNMENT 126 Y12-2d01.p1k chr13 417 272 357004 357149 C 146 97.26 1220 reject_low 3 ALIGNMENT 895 Y12-2d01.q1k chr05 24 1147 426322 427430 F 1124 94.93 1300 accept 0 ALIGNMENT 0 Y12-2d01.p1k chr13 739 398 372717 372716 C 342 0.00 1220 reject_low 20 ALIGNMENT 113 Y12-2d01.p1k chr02 272 417 221226 221373 F 146 94.52 1220 reject_low 17 ALIGNMENT 0 Y12-2d01.p1k chr07 418 739 536101 536100 F 322 0.00 1220 reject_low 13 ALIGNMENT 0 Y12-2d01.p1k chr05 417 411 431459 431492 C 7 0.00 1220 accept 0 ALIGNMENT 93 Y12-2d01.p1k chr10 294 417 478175 478298 F 124 93.55 1220 reject_low 22 ALIGNMENT 120 Y12-2d01.p1k chr01 417 272 160239 160384 C 146 95.89 1220 reject_low 6 ALIGNMENT 126 Y12-2d01.p1k chr02 272 417 226810 226955 F 146 97.26 1220 reject_low 1 ALIGNMENT 114 Y12-2d01.p1k chr07 272 417 931877 932022 F 146 94.52 1220 reject_low 14 ALIGNMENT 0 Y12-2d01.p1k chr13 739 418 362587 362586 C 322 0.00 1220 reject_low 4 ALIGNMENT 807 Y12-2d02.q1k chr04 1016 50 676410 677361 C 967 96.38 1365 accept 0 ALIGNMENT 469 Y12-2d03.p1k chr16 347 983 441884 442507 F 637 94.35 1255 ambiguous_trans 3 ALIGNMENT 880 Y12-2d03.q1k chr12 1069 32 737108 738126 C 1038 96.63 1458 accept 0 ALIGNMENT 468 Y12-2d03.p1k chr08 988 347 86133 86760 C 642 94.24 1255 ambiguous_trans 2 ALIGNMENT 463 Y12-2d03.p1k chr10 1017 347 198036 198692 C 671 93.29 1255 ambiguous_trans 1 ALIGNMENT 87 Y12-2d04.p1k chr13 278 398 634350 634470 F 121 90.91 1207 reject_low 1 ALIGNMENT 940 Y12-2d04.q1k chr16 30 1159 92034 93152 F 1130 96.02 1341 accept 0 ALIGNMENT 0 Y12-2d04.p1k chr13 399 745 634470 634469 F 347 0.00 1207 reject_low 1 ALIGNMENT 605 Y12-2d04.p1k chr16 1037 264 95862 96631 C 774 94.32 1207 accept 0 ALIGNMENT 285 Y12-2d05.p1k vc_2 1041 408 1142 1750 C 634 81.86 1263 reject_vc 2 ALIGNMENT 279 Y12-2d05.p1k vc_7 408 1039 13917 14524 F 632 81.49 1263 reject_vc 5 ALIGNMENT 282 Y12-2d05.p1k vc_6 408 1008 3711 4290 F 601 82.20 1263 reject_vc 6 ALIGNMENT 288 Y12-2d05.p1k vc_5 1041 408 4062 4670 C 634 82.02 1263 reject_vc 0 ALIGNMENT 279 Y12-2d05.p1k vc_7 408 1039 455 1062 F 632 81.49 1263 reject_vc 4 ALIGNMENT 285 Y12-2d05.p1k vc_3 1041 408 1142 1750 C 634 81.86 1263 reject_vc 3 ALIGNMENT 285 Y12-2d05.p1k vc_1 1041 408 1142 1750 C 634 81.86 1263 reject_vc 1 ALIGNMENT 888 Y12-2d06.q1k chr07 34 1028 916156 917164 F 995 97.39 1265 accept 0 ALIGNMENT 791 Y12-2d06.p1k chr07 1215 248 919634 920603 C 968 95.04 1220 accept 0 ALIGNMENT 678 Y12-2d07.p1k chr15 267 1032 920640 921399 F 766 97.52 1266 accept 0 ALIGNMENT 1004 Y12-2d07.q1k chr15 1228 38 923047 924248 C 1191 95.72 1292 accept 0 ALIGNMENT 39 Y12-2d08.p1k chr08 845 705 389362 389506 C 141 78.72 1202 reject_low 15 ALIGNMENT 0 Y12-2d08.p1k chr01 830 761 138936 138935 C 70 0.00 1202 reject_low 1 ALIGNMENT 39 Y12-2d08.p1k chr05 845 705 135789 135933 C 141 78.72 1202 reject_low 12 ALIGNMENT 64 Y12-2d08.p1k chr01 760 645 138935 139050 C 116 87.93 1202 reject_low 1 ALIGNMENT 0 Y12-2d08.p1k chr13 243 830 379418 379417 F 588 0.00 1202 reject_low 4 ALIGNMENT 0 Y12-2d08.p1k chr15 62 704 975915 975914 F 643 0.00 1202 reject_low 22 ALIGNMENT 111 Y12-2d08.p1k chr07 104 236 878694 878825 F 133 96.24 1202 reject_low 3 ALIGNMENT 39 Y12-2d08.p1k chr03 845 705 168778 168922 C 141 78.72 1202 reject_low 9 ALIGNMENT 0 Y12-2d08.p1k chr13 62 704 768553 768552 F 643 0.00 1202 reject_low 18 ALIGNMENT 39 Y12-2d08.p1k chr14 705 845 519170 519314 F 141 78.72 1202 reject_low 19 ALIGNMENT 0 Y12-2d08.p1k chr07 62 103 878694 878693 F 42 0.00 1202 reject_low 3 ALIGNMENT 108 Y12-2d08.p1k chr11 236 113 302558 302680 C 124 96.77 1202 reject_low 5 ALIGNMENT 39 Y12-2d08.p1k chr13 705 845 768553 768697 F 141 78.72 1202 reject_low 18 ALIGNMENT 0 Y12-2d08.p1k chr07 237 830 287466 287465 F 594 0.00 1202 reject_low 6 ALIGNMENT 39 Y12-2d08.p1k chr15 705 845 975915 976059 F 141 78.72 1202 reject_low 22 ALIGNMENT 0 Y12-2d08.p1k chr07 237 830 878825 878824 F 594 0.00 1202 reject_low 3 ALIGNMENT 39 Y12-2d08.p1k chr01 845 705 160425 160569 C 141 78.72 1202 reject_low 7 ALIGNMENT 39 Y12-2d08.p1k chr08 845 705 91945 92089 C 141 78.72 1202 reject_low 14 ALIGNMENT 953 Y12-2d08.p1k chr10 18 1197 415738 416930 F 1180 95.42 1202 accept 0 ALIGNMENT 0 Y12-2d08.p1k chr04 704 62 878626 878625 C 643 0.00 1202 reject_low 10 ALIGNMENT 0 Y12-2d08.p1k chr13 62 113 379291 379290 F 52 0.00 1202 reject_low 4 ALIGNMENT 104 Y12-2d08.p1k chr07 121 236 287352 287466 F 116 97.41 1202 reject_low 6 ALIGNMENT 0 Y12-2d08.p1k chr03 704 62 168923 168922 C 643 0.00 1202 reject_low 9 ALIGNMENT 39 Y12-2d08.p1k chr15 705 845 970288 970432 F 141 78.72 1202 reject_low 21 ALIGNMENT 25 Y12-2d08.p1k chr02 885 924 9045 9083 F 40 90.00 1202 reject_low 23 ALIGNMENT 39 Y12-2d08.p1k chr14 705 845 524736 524880 F 141 78.72 1202 reject_low 20 ALIGNMENT 0 Y12-2d08.p1k chr11 830 237 302559 302558 C 594 0.00 1202 reject_low 5 ALIGNMENT 0 Y12-2d08.p1k chr10 62 704 538023 538022 F 643 0.00 1202 reject_low 16 ALIGNMENT 0 Y12-2d08.p1k chr08 704 62 389507 389506 C 643 0.00 1202 reject_low 15 ALIGNMENT 119 Y12-2d08.p1k chr16 113 245 56157 56288 F 133 97.74 1202 reject_low 2 ALIGNMENT 0 Y12-2d08.p1k chr05 704 62 135934 135933 C 643 0.00 1202 reject_low 12 ALIGNMENT 0 Y12-2d08.p1k chr16 246 830 56288 56287 F 585 0.00 1202 reject_low 2 ALIGNMENT 119 Y12-2d08.p1k chr13 114 242 379291 379418 F 129 98.45 1202 reject_low 4 ALIGNMENT 0 Y12-2d08.p1k chr12 62 704 650832 650831 F 643 0.00 1202 reject_low 17 ALIGNMENT 39 Y12-2d08.p1k chr12 705 845 650832 650976 F 141 78.72 1202 reject_low 17 ALIGNMENT 0 Y12-2d08.p1k chr02 62 704 9099 9098 F 643 0.00 1202 reject_low 8 ALIGNMENT 976 Y12-2d08.q1k chr10 1131 36 418889 419992 C 1096 97.17 1276 accept 0 ALIGNMENT 0 Y12-2d08.p1k chr07 62 120 287352 287351 F 59 0.00 1202 reject_low 6 ALIGNMENT 39 Y12-2d08.p1k chr04 845 705 878481 878625 C 141 78.72 1202 reject_low 10 ALIGNMENT 39 Y12-2d08.p1k chr07 845 705 562030 562174 C 141 78.72 1202 reject_low 13 ALIGNMENT 0 Y12-2d08.p1k chr01 644 62 139051 139050 C 583 0.00 1202 reject_low 1 ALIGNMENT 39 Y12-2d08.p1k chr04 705 845 1352640 1352784 F 141 78.72 1202 reject_low 11 ALIGNMENT 0 Y12-2d08.p1k chr04 62 704 1352640 1352639 F 643 0.00 1202 reject_low 11 ALIGNMENT 39 Y12-2d08.p1k chr02 705 845 9099 9243 F 141 78.72 1202 reject_low 8 ALIGNMENT 0 Y12-2d08.p1k chr11 112 62 302681 302680 C 51 0.00 1202 reject_low 5 ALIGNMENT 0 Y12-2d08.p1k chr14 62 704 519170 519169 F 643 0.00 1202 reject_low 19 ALIGNMENT 0 Y12-2d08.p1k chr07 704 62 562175 562174 C 643 0.00 1202 reject_low 13 ALIGNMENT 39 Y12-2d08.p1k chr10 705 845 538023 538167 F 141 78.72 1202 reject_low 16 ALIGNMENT 0 Y12-2d08.p1k chr15 62 704 970288 970287 F 643 0.00 1202 reject_low 21 ALIGNMENT 0 Y12-2d08.p1k chr14 62 704 524736 524735 F 643 0.00 1202 reject_low 20 ALIGNMENT 0 Y12-2d08.p1k chr16 62 112 56157 56156 F 51 0.00 1202 reject_low 2 ALIGNMENT 0 Y12-2d08.p1k chr08 704 62 92090 92089 C 643 0.00 1202 reject_low 14 ALIGNMENT 0 Y12-2d08.p1k chr01 704 62 160570 160569 C 643 0.00 1202 reject_low 7 ALIGNMENT 0 Y12-2d08.p1k chr02 62 884 9045 9044 F 823 0.00 1202 reject_low 23 ALIGNMENT 0 Y12-2d09.q1k chr02 877 453 791265 791264 C 425 0.00 1452 reject_low 1 ALIGNMENT 27 Y12-2d09.q1k chr02 452 420 791264 791296 C 33 93.94 1452 reject_low 1 ALIGNMENT 0 Y12-2d09.q1k chr02 419 62 791297 791296 C 358 0.00 1452 reject_low 1 ALIGNMENT 1039 Y12-2d09.p1k chr12 20 1216 322161 323367 F 1197 96.16 1244 accept 0 ALIGNMENT 1054 Y12-2d09.q1k chr12 1298 38 324862 326131 C 1261 95.24 1452 accept 0 ALIGNMENT 163 Y12-2d10.q1k chr12 659 1010 1076265 1076617 F 352 83.81 1398|9,0 reject_low 403 ALIGNMENT 0 Y12-2d10.q1k chr05 62 549 575180 575179 F 488 0.00 1398 reject_low 333 ALIGNMENT 388 Y12-2d10.q1k chr12 1311 587 7014 7750 C 725 85.79 1398 reject_low 12 ALIGNMENT 109 Y12-2d10.q1k chr12 695 1007 1069602 1069915 F 313 80.19 1398 reject_low 186 ALIGNMENT 115 Y12-2d10.q1k chr12 764 546 1678 1896 C 219 84.93 1398 reject_low 219 ALIGNMENT 101 Y12-2d10.q1k chr06 999 675 940 1265 C 325 78.77 1398 reject_low 220 ALIGNMENT 138 Y12-2d10.q1k chr05 1010 639 1686 2058 C 372 80.65 1398 reject_low 147 ALIGNMENT 0 Y12-2d10.q1k chr12 62 549 1076552 1076551 F 488 0.00 1398 reject_low 336 ALIGNMENT 54 Y12-2d10.q1k chr14 1010 897 1862 1976 C 114 85.09 1398 reject_low 287 ALIGNMENT 86 Y12-2d10.q1k chr08 803 999 560417 560614 F 197 83.25 1398 reject_low 237 ALIGNMENT 221 Y12-2d10.q1k chr16 531 974 946050 946494 F 444 84.68 1398 reject_low 93 ALIGNMENT 0 Y12-2d10.q1k chr09 566 62 2383 2382 C 505 0.00 1398 reject_low 142 ALIGNMENT 54 Y12-2d10.q1k chr12 1010 897 2079 2193 C 114 85.09 1398 reject_low 415 ALIGNMENT 227 Y12-2d10.q1k chr09 903 531 1830 2202 C 373 88.20 1398 reject_low 97 ALIGNMENT 230 Y12-2d10.q1k chr12 903 531 1683 2055 C 373 88.47 1398 reject_low 95 ALIGNMENT 20 Y12-2d10.q1k chr05 568 546 1481 1503 C 23 95.65 1398 reject_low 395 ALIGNMENT 99 Y12-2d10.q1k chr05 764 550 1465 1679 C 215 82.79 1398 reject_low 243 ALIGNMENT 122 Y12-2d10.q1k chr16 831 535 1483 1779 C 297 81.48 1398 reject_low 201 ALIGNMENT 79 Y12-2d10.q1k chr12 712 531 1694 1875 C 182 81.87 1398 reject_low 261 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 2056 2055 C 469 0.00 1398 reject_low 95 ALIGNMENT 0 Y12-2d10.q1k chr08 765 880 560846 560845 F 116 0.00 1398 reject_low 247 ALIGNMENT 0 Y12-2d10.q1k chr08 62 545 560772 560771 F 484 0.00 1398 reject_low 380 ALIGNMENT 0 Y12-2d10.q1k chr08 832 62 1938 1937 C 771 0.00 1398 reject_low 293 ALIGNMENT 0 Y12-2d10.q1k chr02 549 62 2272 2271 C 488 0.00 1398 reject_low 102 ALIGNMENT 0 Y12-2d10.q1k chr15 62 530 1089281 1089280 F 469 0.00 1398 reject_low 91 ALIGNMENT 160 Y12-2d10.q1k chr13 867 531 1667 2003 C 337 83.68 1398 reject_low 138 ALIGNMENT 0 Y12-2d10.q1k chr08 616 880 560841 560840 F 265 0.00 1398 reject_low 380 ALIGNMENT 276 Y12-2d10.q1k chr05 1010 531 1542 2022 C 480 87.29 1398 reject_low 57 ALIGNMENT 0 Y12-2d10.q1k chr16 62 934 945987 945986 F 873 0.00 1398 reject_low 326 ALIGNMENT 0 Y12-2d10.q1k chr15 62 530 1089389 1089388 F 469 0.00 1398 reject_low 184 ALIGNMENT 231 Y12-2d10.q1k chr12 623 1010 1069602 1069990 F 388 88.14 1398 reject_low 73 ALIGNMENT 0 Y12-2d10.q1k chr16 880 765 1479 1478 C 116 0.00 1398 reject_low 251 ALIGNMENT 0 Y12-2d10.q1k chr16 62 530 946050 946049 F 469 0.00 1398 reject_low 93 ALIGNMENT 54 Y12-2d10.q1k chr16 897 1010 945984 946098 F 114 85.09 1398 reject_low 289 ALIGNMENT 0 Y12-2d10.q1k chr12 880 832 7327 7326 C 49 0.00 1398 reject_low 54 ALIGNMENT 54 Y12-2d10.q1k chr13 1010 897 1955 2069 C 114 85.09 1398 reject_low 286 ALIGNMENT 0 Y12-2d10.q1k chr02 528 62 2005 2004 C 467 0.00 1398 reject_low 125 ALIGNMENT 0 Y12-2d10.q1k chr05 62 549 575216 575215 F 488 0.00 1398 reject_low 350 ALIGNMENT 75 Y12-2d10.q1k chr10 1010 711 2065 2365 C 300 77.00 1398 reject_low 256 ALIGNMENT 676 Y12-2d10.p1k chr09 269 1080 3806 4604 F 812 95.57 1278 reject_low 1 ALIGNMENT 0 Y12-2d10.q1k chr10 710 62 2366 2365 C 649 0.00 1398 reject_low 256 ALIGNMENT 165 Y12-2d10.q1k chr06 724 531 892 1085 C 194 95.88 1398 reject_low 132 ALIGNMENT 0 Y12-2d10.q1k chr10 880 767 1771 1770 C 114 0.00 1398 reject_low 273 ALIGNMENT 0 Y12-2d10.q1k chr08 677 880 560830 560829 F 204 0.00 1398 reject_low 335 ALIGNMENT 97 Y12-2d10.q1k chr16 756 1007 945987 946239 F 252 81.75 1398 reject_low 216 ALIGNMENT 0 Y12-2d10.q1k chr10 880 713 1789 1788 C 168 0.00 1398 reject_low 258 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1069762 1069761 F 469 0.00 1398 reject_low 404 ALIGNMENT 263 Y12-2d10.q1k chr06 1311 639 581 1265 C 673 80.98 1398 reject_low 40 ALIGNMENT 0 Y12-2d10.q1k chr05 796 880 575317 575316 F 85 0.00 1398 reject_low 163 ALIGNMENT 0 Y12-2d10.q1k chr16 832 880 946494 946493 F 49 0.00 1398 reject_low 152 ALIGNMENT 244 Y12-2d10.q1k chr07 531 901 1089022 1089392 F 371 89.76 1398 reject_low 85 ALIGNMENT 0 Y12-2d10.q1k chr07 62 934 1088995 1088994 F 873 0.00 1398 reject_low 319 ALIGNMENT 0 Y12-2d10.q1k chr08 880 677 1663 1662 C 204 0.00 1398 reject_low 276 ALIGNMENT 0 Y12-2d10.q1k chr04 62 802 1530064 1530063 F 741 0.00 1398 reject_low 236 ALIGNMENT 0 Y12-2d10.q1k chr05 62 896 574915 574914 F 835 0.00 1398 reject_low 283 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 2363 2362 C 469 0.00 1398 reject_low 62 ALIGNMENT 234 Y12-2d10.q1k chr16 1010 623 1519 1907 C 388 88.40 1398 reject_low 70 ALIGNMENT 690 Y12-2d10.q1k chr13 935 32 1671 2586 C 904 92.59 1398 reject_low 16 ALIGNMENT 181 Y12-2d10.q1k chr09 935 529 1834 2240 C 407 82.80 1398 reject_low 113 ALIGNMENT 0 Y12-2d10.q1k chr05 545 62 1504 1503 C 484 0.00 1398 reject_low 395 ALIGNMENT 0 Y12-2d10.q1k chr09 528 62 2241 2240 C 467 0.00 1398 reject_low 113 ALIGNMENT 60 Y12-2d10.q1k chr12 1011 839 7577 7750 C 173 80.35 1398 reject_low 268 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1069654 1069653 F 469 0.00 1398 reject_low 399 ALIGNMENT 73 Y12-2d10.q1k chr05 676 550 1481 1607 C 127 86.61 1398 reject_low 295 ALIGNMENT 0 Y12-2d10.q1k chr14 530 62 1911 1910 C 469 0.00 1398 reject_low 139 ALIGNMENT 676 Y12-2d10.p1k chr10 269 1080 3789 4587 F 812 95.57 1278 reject_low 2 ALIGNMENT 251 Y12-2d10.q1k chr10 942 531 1773 2185 C 412 88.35 1398 reject_low 65 ALIGNMENT 30 Y12-2d10.p1k chr06 935 990 2869 2922 F 56 87.50 1278 reject_low 42 ALIGNMENT 0 Y12-2d10.q1k chr07 62 766 1088970 1088969 F 705 0.00 1398 reject_low 190 ALIGNMENT 37 Y12-2d10.q1k chr08 935 999 560442 560506 F 65 87.69 1398 reject_low 348 ALIGNMENT 147 Y12-2d10.q1k chr10 999 567 1932 2365 C 433 79.45 1398 reject_low 143 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 2075 2074 C 469 0.00 1398 reject_low 173 ALIGNMENT 255 Y12-2d10.q1k chr16 1035 587 1458 1907 C 449 87.08 1398 reject_low 55 ALIGNMENT 0 Y12-2d10.q1k chr04 62 545 1530419 1530418 F 484 0.00 1398 reject_low 378 ALIGNMENT 0 Y12-2d10.q1k chr08 880 641 1663 1662 C 240 0.00 1398 reject_low 352 ALIGNMENT 50 Y12-2d10.q1k chr16 535 640 946378 946483 F 106 83.02 1398 reject_low 346 ALIGNMENT 0 Y12-2d10.q1k chr07 62 658 1088970 1088969 F 597 0.00 1398 reject_low 118 ALIGNMENT 0 Y12-2d10.q1k chr08 549 62 1753 1752 C 488 0.00 1398 reject_low 352 ALIGNMENT 86 Y12-2d10.q1k chr15 803 999 1089229 1089426 F 197 83.25 1398 reject_low 239 ALIGNMENT 49 Y12-2d10.q1k chr08 550 640 560740 560830 F 91 85.71 1398 reject_low 353 ALIGNMENT 0 Y12-2d10.q1k chr13 622 62 2092 2091 C 561 0.00 1398 reject_low 68 ALIGNMENT 89 Y12-2d10.q1k chr14 999 803 1801 1998 C 197 83.76 1398 reject_low 231 ALIGNMENT 57 Y12-2d10.q1k chr04 839 1011 1530064 1530237 F 173 79.77 1398 reject_low 290 ALIGNMENT 388 Y12-2d10.q1k chr14 1311 587 1262 1998 C 725 85.79 1398 reject_low 37 ALIGNMENT 49 Y12-2d10.q1k chr08 640 550 1662 1752 C 91 85.71 1398 reject_low 352 ALIGNMENT 72 Y12-2d10.q1k chr15 550 712 1089480 1089642 F 163 82.21 1398 reject_low 309 ALIGNMENT 0 Y12-2d10.q1k chr06 786 62 1262 1261 C 725 0.00 1398 reject_low 341 ALIGNMENT 0 Y12-2d10.q1k chr12 896 62 7729 7728 C 835 0.00 1398 reject_low 285 ALIGNMENT 0 Y12-2d10.q1k chr16 62 530 946122 946121 F 469 0.00 1398 reject_low 92 ALIGNMENT 68 Y12-2d10.q1k chr05 999 766 1805 2039 C 234 78.63 1398 reject_low 265 ALIGNMENT 0 Y12-2d10.q1k chr06 530 62 942 941 C 469 0.00 1398 reject_low 373 ALIGNMENT 0 Y12-2d10.q1k chr16 62 658 945962 945961 F 597 0.00 1398 reject_low 111 ALIGNMENT 167 Y12-2d10.q1k chr08 903 617 1651 1937 C 287 87.46 1398 reject_low 133 ALIGNMENT 0 Y12-2d10.p1k chr12 470 934 3836 3831 F 465 0.00 1278 reject_low 11,12 ALIGNMENT 0 Y12-2d10.q1k chr15 62 622 1089229 1089228 F 561 0.00 1398 reject_low 74 ALIGNMENT 0 Y12-2d10.q1k chr12 838 62 7751 7750 C 777 0.00 1398 reject_low 268 ALIGNMENT 177 Y12-2d10.q1k chr16 659 999 945962 946303 F 341 85.63 1398 reject_low 111 ALIGNMENT 30 Y12-2d10.p1k chr08 935 990 3564 3617 F 56 87.50 1278 reject_low 43 ALIGNMENT 0 Y12-2d10.q1k chr13 880 796 1668 1667 C 85 0.00 1398 reject_low 165 ALIGNMENT 0 Y12-2d10.q1k chr14 534 62 1871 1870 C 473 0.00 1398 reject_low 200 ALIGNMENT 0 Y12-2d10.q1k chr09 822 62 2379 2378 C 761 0.00 1398 reject_low 390 ALIGNMENT 0 Y12-2d10.q1k chr05 549 62 1536 1535 C 488 0.00 1398 reject_low 374 ALIGNMENT 0 Y12-2d10.q1k chr07 62 549 1089257 1089256 F 488 0.00 1398 reject_low 334 ALIGNMENT 89 Y12-2d10.q1k chr05 803 999 574893 575090 F 197 83.76 1398 reject_low 227 ALIGNMENT 0 Y12-2d10.q1k chr06 710 62 1266 1265 C 649 0.00 1398 reject_low 294 ALIGNMENT 0 Y12-2d10.q1k chr12 62 766 1069602 1069601 F 705 0.00 1398 reject_low 205 ALIGNMENT 43 Y12-2d10.q1k chr12 935 999 1069627 1069691 F 65 90.77 1398 reject_low 321 ALIGNMENT 0 Y12-2d10.q1k chr12 62 945 1076265 1076264 F 884 0.00 1398 reject_low 365 ALIGNMENT 0 Y12-2d10.q1k chr12 534 62 7623 7622 C 473 0.00 1398 reject_low 54 ALIGNMENT 165 Y12-2d10.q1k chr10 838 535 1770 2073 C 304 85.86 1398 reject_low 135 ALIGNMENT 49 Y12-2d10.q1k chr12 550 640 1076588 1076678 F 91 85.71 1398 reject_low 354 ALIGNMENT 113 Y12-2d10.q1k chr06 831 529 893 1195 C 303 80.20 1398 reject_low 208 ALIGNMENT 0 Y12-2d10.q1k chr12 755 62 7726 7725 C 694 0.00 1398 reject_low 212 ALIGNMENT 0 Y12-2d10.q1k chr02 534 62 2251 2250 C 473 0.00 1398 reject_low 58 ALIGNMENT 238 Y12-2d10.q1k chr02 1011 531 1881 2362 C 481 84.62 1398 reject_low 62 ALIGNMENT 0 Y12-2d10.q1k chr02 880 764 1771 1770 C 117 0.00 1398 reject_low 125 ALIGNMENT 479 Y12-2d10.q1k chr12 1311 531 1371 2163 C 781 88.35 1398 reject_low 31 ALIGNMENT 0 Y12-2d10.q1k chr07 62 545 1089325 1089324 F 484 0.00 1398 reject_low 385 ALIGNMENT 0 Y12-2d10.q1k chr08 616 62 1938 1937 C 555 0.00 1398 reject_low 133 ALIGNMENT 0 Y12-2d10.q1k chr08 62 694 560417 560416 F 633 0.00 1398 reject_low 154 ALIGNMENT 0 Y12-2d10.q1k chr02 945 62 2415 2414 C 884 0.00 1398 reject_low 387 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 7555 7554 C 469 0.00 1398 reject_low 406,407 ALIGNMENT 0 Y12-2d10.q1k chr14 880 832 1575 1574 C 49 0.00 1398 reject_low 200 ALIGNMENT 0 Y12-2d10.q1k chr12 62 549 1069925 1069924 F 488 0.00 1398 reject_low 400 ALIGNMENT 135 Y12-2d10.q1k chr05 831 546 1470 1755 C 286 83.57 1398 reject_low 168 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 7699 7698 C 469 0.00 1398 reject_low 49 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 7663 7662 C 469 0.00 1398 reject_low 51 ALIGNMENT 0 Y12-2d10.q1k chr04 62 530 1530260 1530259 F 469 0.00 1398 reject_low 245 ALIGNMENT 0 Y12-2d10.p1k chr02 470 934 4037 4032 F 465 0.00 1278 reject_low 45 ALIGNMENT 228 Y12-2d10.q1k chr10 1010 531 1849 2329 C 480 83.96 1398 reject_low 78 ALIGNMENT 104 Y12-2d10.q1k chr08 712 527 1662 1847 C 186 86.02 1398 reject_low 202 ALIGNMENT 60 Y12-2d10.q1k chr05 839 1011 574893 575066 F 173 80.35 1398 reject_low 266 ALIGNMENT 258 Y12-2d10.q1k chr08 623 1010 560417 560805 F 388 90.46 1398 reject_low 59 ALIGNMENT 0 Y12-2d10.q1k chr07 614 880 1089392 1089391 F 267 0.00 1398 reject_low 385 ALIGNMENT 0 Y12-2d10.q1k chr12 62 802 1069602 1069601 F 741 0.00 1398 reject_low 238 ALIGNMENT 0 Y12-2d10.q1k chr12 62 945 1069602 1069601 F 884 0.00 1398 reject_low 364 ALIGNMENT 0 Y12-2d10.q1k chr08 880 713 1663 1662 C 168 0.00 1398 reject_low 202 ALIGNMENT 0 Y12-2d10.q1k chr02 622 62 2415 2414 C 561 0.00 1398 reject_low 89 ALIGNMENT 132 Y12-2d10.q1k chr16 795 531 1483 1747 C 265 84.15 1398 reject_low 167 ALIGNMENT 160 Y12-2d10.q1k chr16 867 531 1483 1819 C 337 83.68 1398 reject_low 140 ALIGNMENT 388 Y12-2d10.q1k chr05 587 1311 574893 575629 F 725 85.79 1398 reject_low 36 ALIGNMENT 101 Y12-2d10.q1k chr16 1010 767 1663 1907 C 244 82.79 1398 reject_low 194 ALIGNMENT 0 Y12-2d10.q1k chr15 62 530 1089425 1089424 F 469 0.00 1398 reject_low 254 ALIGNMENT 0 Y12-2d10.q1k chr08 725 62 1901 1900 C 664 0.00 1398 reject_low 241 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 7591 7590 C 469 0.00 1398 reject_low 52 ALIGNMENT 242 Y12-2d10.q1k chr04 531 903 1530116 1530488 F 373 89.54 1398 reject_low 86 ALIGNMENT 0 Y12-2d10.q1k chr15 62 530 1089317 1089316 F 469 0.00 1398 reject_low 149 ALIGNMENT 74 Y12-2d10.q1k chr08 676 531 1662 1807 C 146 84.25 1398 reject_low 276 ALIGNMENT 0 Y12-2d10.q1k chr12 534 62 1800 1799 C 473 0.00 1398 reject_low 345 ALIGNMENT 188 Y12-2d10.p1k chr08 269 469 3367 3567 F 201 98.01 1278 reject_low 43 ALIGNMENT 0 Y12-2d10.q1k chr06 880 616 894 893 C 265 0.00 1398 reject_low 315 ALIGNMENT 0 Y12-2d10.q1k chr05 566 62 2059 2058 C 505 0.00 1398 reject_low 99 ALIGNMENT 0 Y12-2d10.q1k chr08 62 802 560417 560416 F 741 0.00 1398 reject_low 237 ALIGNMENT 0 Y12-2d10.q1k chr09 528 62 2277 2276 C 467 0.00 1398 reject_low 108 ALIGNMENT 159 Y12-2d10.q1k chr07 531 865 1089058 1089392 F 335 83.58 1398 reject_low 141 ALIGNMENT 0 Y12-2d10.q1k chr12 668 667 1070007 1076273 F 0 0.00 1398 reject_low 403 ALIGNMENT 391 Y12-2d10.q1k chr13 1311 587 1355 2091 C 725 85.93 1398 reject_low 35 ALIGNMENT 0 Y12-2d10.q1k chr06 530 62 1050 1049 C 469 0.00 1398 reject_low 257 ALIGNMENT 0 Y12-2d10.q1k chr16 530 62 1820 1819 C 469 0.00 1398 reject_low 140 ALIGNMENT 94 Y12-2d10.q1k chr05 531 764 575089 575322 F 234 80.77 1398 reject_low 246 ALIGNMENT 114 Y12-2d10.q1k chr15 535 822 1089357 1089644 F 288 80.90 1398 reject_low 218 ALIGNMENT 0 Y12-2d10.q1k chr16 641 880 946483 946482 F 240 0.00 1398 reject_low 346 ALIGNMENT 0 Y12-2d10.q1k chr16 530 62 1748 1747 C 469 0.00 1398 reject_low 167 ALIGNMENT 49 Y12-2d10.q1k chr15 550 640 1089552 1089642 F 91 85.71 1398 reject_low 357 ALIGNMENT 0 Y12-2d10.q1k chr15 641 880 1089642 1089641 F 240 0.00 1398 reject_low 357 ALIGNMENT 0 Y12-2d10.q1k chr09 530 62 2347 2346 C 469 0.00 1398 reject_low 77 ALIGNMENT 90 Y12-2d10.q1k chr08 1010 766 1687 1932 C 245 81.22 1398 reject_low 226 ALIGNMENT 206 Y12-2d10.q1k chr08 867 609 1651 1909 C 259 94.59 1398 reject_low 109 ALIGNMENT 233 Y12-2d10.q1k chr09 1010 529 1830 2312 C 482 84.23 1398 reject_low 63 ALIGNMENT 185 Y12-2d10.p1k chr08 469 269 558795 558995 C 201 97.51 1278 reject_low 46 ALIGNMENT 0 Y12-2d10.q1k chr12 794 802 1070025 1076264 F 9 0.00 1398 reject_low 404 ALIGNMENT 0 Y12-2d10.q1k chr08 934 62 1907 1906 C 873 0.00 1398 reject_low 330 ALIGNMENT 117 Y12-2d10.q1k chr16 535 764 946270 946499 F 230 84.35 1398 reject_low 207 ALIGNMENT 0 Y12-2d10.q1k chr08 955 62 1922 1921 C 894 0.00 1398 reject_low 372 ALIGNMENT 0 Y12-2d10.q1k chr05 62 934 574918 574917 F 873 0.00 1398 reject_low 318 ALIGNMENT 110 Y12-2d10.q1k chr02 999 756 2145 2389 C 244 84.02 1398 reject_low 176 ALIGNMENT 0 Y12-2d10.q1k chr09 606 62 2379 2378 C 545 0.00 1398 reject_low 126 ALIGNMENT 0 Y12-2d10.q1k chr05 62 545 575248 575247 F 484 0.00 1398 reject_low 379 ALIGNMENT 0 Y12-2d10.q1k chr16 62 534 946090 946089 F 473 0.00 1398 reject_low 105 ALIGNMENT 67 Y12-2d10.q1k chr05 1010 787 1830 2054 C 224 79.02 1398 reject_low 260 ALIGNMENT 43 Y12-2d10.q1k chr16 999 935 1818 1882 C 65 90.77 1398 reject_low 325 ALIGNMENT 225 Y12-2d10.q1k chr16 623 1010 945962 946350 F 388 87.63 1398 reject_low 79 ALIGNMENT 0 Y12-2d10.q1k chr16 545 62 1553 1552 C 484 0.00 1398 reject_low 384 ALIGNMENT 0 Y12-2d10.q1k chr12 545 62 1717 1716 C 484 0.00 1398 reject_low 397 ALIGNMENT 0 Y12-2d10.q1k chr09 880 677 1842 1841 C 204 0.00 1398 reject_low 274 ALIGNMENT 0 Y12-2d10.q1k chr04 677 880 1530477 1530476 F 204 0.00 1398 reject_low 332 ALIGNMENT 0 Y12-2d10.q1k chr13 880 616 1668 1667 C 265 0.00 1398 reject_low 382 ALIGNMENT 31 Y12-2d10.q1k chr05 946 1011 574893 574958 F 66 83.33 1398 reject_low 360 ALIGNMENT 0 Y12-2d10.q1k chr09 534 62 2127 2126 C 473 0.00 1398 reject_low 104 ALIGNMENT 41 Y12-2d10.q1k chr12 546 615 1076620 1076689 F 70 87.14 1398 reject_low 381 ALIGNMENT 0 Y12-2d10.q1k chr10 880 839 1771 1770 C 42 0.00 1398 reject_low 135 ALIGNMENT 0 Y12-2d10.q1k chr10 549 62 2023 2022 C 488 0.00 1398 reject_low 136 ALIGNMENT 166 Y12-2d10.q1k chr14 1010 659 1646 1998 C 352 84.09 1398 reject_low 120 ALIGNMENT 0 Y12-2d10.q1k chr02 802 62 2415 2414 C 741 0.00 1398 reject_low 235 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1076317 1076316 F 469 0.00 1398 reject_low 87 ALIGNMENT 242 Y12-2d10.q1k chr12 531 903 1076317 1076689 F 373 89.54 1398 reject_low 87 ALIGNMENT 683 Y12-2d10.q1k chr02 1010 32 1918 2910 C 979 90.50 1398 reject_low 28 ALIGNMENT 122 Y12-2d10.q1k chr14 831 535 1574 1870 C 297 81.48 1398 reject_low 200 ALIGNMENT 0 Y12-2d10.q1k chr15 62 934 1089254 1089253 F 873 0.00 1398 reject_low 324 ALIGNMENT 0 Y12-2d10.q1k chr08 62 530 560505 560504 F 469 0.00 1398 reject_low 130 ALIGNMENT 55 Y12-2d10.q1k chr14 676 550 1585 1711 C 127 81.89 1398 reject_low 338 ALIGNMENT 89 Y12-2d10.q1k chr07 803 999 1088970 1089167 F 197 83.76 1398 reject_low 228 ALIGNMENT 41 Y12-2d10.q1k chr12 615 546 7326 7395 C 70 87.14 1398 reject_low 416 ALIGNMENT 72 Y12-2d10.q1k chr16 712 550 1494 1656 C 163 82.21 1398 reject_low 310 ALIGNMENT 0 Y12-2d10.q1k chr02 880 652 1775 1774 C 229 0.00 1398 reject_low 275 ALIGNMENT 89 Y12-2d10.q1k chr12 999 803 2018 2215 C 197 83.76 1398 reject_low 413 ALIGNMENT 0 Y12-2d10.q1k chr16 616 880 946494 946493 F 265 0.00 1398 reject_low 376 ALIGNMENT 0 Y12-2d10.q1k chr13 530 62 1932 1931 C 469 0.00 1398 reject_low 165 ALIGNMENT 0 Y12-2d10.q1k chr10 530 62 2150 2149 C 469 0.00 1398 reject_low 106 ALIGNMENT 0 Y12-2d10.q1k chr05 822 62 2055 2054 C 761 0.00 1398 reject_low 328 ALIGNMENT 0 Y12-2d10.q1k chr05 638 62 2059 2058 C 577 0.00 1398 reject_low 147 ALIGNMENT 0 Y12-2d10.q1k chr10 534 62 1822 1821 C 473 0.00 1398 reject_low 394 ALIGNMENT 0 Y12-2d10.q1k chr13 694 62 2092 2091 C 633 0.00 1398 reject_low 179 ALIGNMENT 0 Y12-2d10.q1k chr12 704 703 1070007 1076273 F 0 0.00 1398 reject_low 412 ALIGNMENT 0 Y12-2d10.q1k chr16 62 945 945962 945961 F 884 0.00 1398 reject_low 370 ALIGNMENT 0 Y12-2d10.q1k chr08 62 896 560439 560438 F 835 0.00 1398 reject_low 298 ALIGNMENT 125 Y12-2d10.q1k chr08 535 795 560581 560841 F 261 83.52 1398 reject_low 188 ALIGNMENT 0 Y12-2d10.q1k chr05 765 62 2040 2039 C 704 0.00 1398 reject_low 265 ALIGNMENT 0 Y12-2d10.q1k chr10 566 62 2366 2365 C 505 0.00 1398 reject_low 143 ALIGNMENT 0 Y12-2d10.q1k chr16 586 62 1908 1907 C 525 0.00 1398 reject_low 55 ALIGNMENT 72 Y12-2d10.q1k chr12 550 712 1076516 1076678 F 163 82.21 1398 reject_low 306 ALIGNMENT 215 Y12-2d10.q1k chr08 531 903 560469 560841 F 373 87.13 1398 reject_low 101 ALIGNMENT 0 Y12-2d10.q1k chr09 710 62 2383 2382 C 649 0.00 1398 reject_low 255 ALIGNMENT 0 Y12-2d10.q1k chr15 823 880 1089644 1089643 F 58 0.00 1398 reject_low 218 ALIGNMENT 0 Y12-2d10.q1k chr04 62 755 1530089 1530088 F 694 0.00 1398 reject_low 221 ALIGNMENT 30 Y12-2d10.q1k chr06 1011 823 1072 1261 C 189 74.07 1398 reject_low 389 ALIGNMENT 101 Y12-2d10.q1k chr12 1010 767 7506 7750 C 244 82.79 1398 reject_low 191 ALIGNMENT 0 Y12-2d10.q1k chr16 62 896 945984 945983 F 835 0.00 1398 reject_low 289 ALIGNMENT 72 Y12-2d10.q1k chr08 550 712 560668 560830 F 163 82.21 1398 reject_low 305 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 7500 7499 C 488 0.00 1398 reject_low 410,413 ALIGNMENT 0 Y12-2d10.q1k chr12 880 641 1695 1694 C 240 0.00 1398 reject_low 345 ALIGNMENT 0 Y12-2d10.q1k chr12 631 632 2207 7345 C 0 0.00 1398 reject_low 401 ALIGNMENT 0 Y12-2d10.q1k chr02 658 62 2415 2414 C 597 0.00 1398 reject_low 116 ALIGNMENT 0 Y12-2d10.q1k chr05 880 569 1482 1481 C 312 0.00 1398 reject_low 395 ALIGNMENT 222 Y12-2d10.q1k chr12 1010 623 1827 2215 C 388 87.37 1398|0,9 reject_low 401 ALIGNMENT 191 Y12-2d10.p1k chr13 269 469 3511 3711 F 201 98.51 1278 reject_low 29 ALIGNMENT 0 Y12-2d10.q1k chr10 534 62 2074 2073 C 473 0.00 1398 reject_low 135 ALIGNMENT 30 Y12-2d10.p1k chr12 935 990 9367 9420 F 56 87.50 1278 reject_low 44 ALIGNMENT 0 Y12-2d10.q1k chr12 832 880 1076689 1076688 F 49 0.00 1398 reject_low 198 ALIGNMENT 59 Y12-2d10.q1k chr08 839 1010 560417 560589 F 172 80.23 1398 reject_low 279 ALIGNMENT 122 Y12-2d10.q1k chr09 999 639 2021 2382 C 361 79.50 1398 reject_low 159 ALIGNMENT 126 Y12-2d10.q1k chr08 935 690 1655 1900 C 246 85.37 1398 reject_low 170 ALIGNMENT 86 Y12-2d10.q1k chr12 803 999 1076265 1076462 F 197 83.25 1398 reject_low 404 ALIGNMENT 664 Y12-2d10.p1k chr05 1080 269 572675 573473 C 812 95.07 1278 reject_low 3 ALIGNMENT 474 Y12-2d10.q1k chr16 531 1298 946014 946793 F 768 88.54 1398 reject_low 32 ALIGNMENT 0 Y12-2d10.q1k chr06 880 581 893 892 C 300 0.00 1398 reject_low 373 ALIGNMENT 0 Y12-2d10.q1k chr15 62 766 1089229 1089228 F 705 0.00 1398 reject_low 206 ALIGNMENT 0 Y12-2d10.q1k chr14 694 62 1999 1998 C 633 0.00 1398 reject_low 180 ALIGNMENT 0 Y12-2d10.q1k chr08 62 530 560469 560468 F 469 0.00 1398 reject_low 101 ALIGNMENT 157 Y12-2d10.q1k chr12 531 867 1076353 1076689 F 337 83.38 1398 reject_low 145 ALIGNMENT 122 Y12-2d10.q1k chr10 999 639 2004 2365 C 361 79.50 1398 reject_low 160 ALIGNMENT 0 Y12-2d10.q1k chr05 528 62 1989 1988 C 467 0.00 1398 reject_low 56 ALIGNMENT 0 Y12-2d10.q1k chr12 534 62 2088 2087 C 473 0.00 1398 reject_low 107 ALIGNMENT 122 Y12-2d10.q1k chr12 831 535 7326 7622 C 297 81.48 1398 reject_low 54 ALIGNMENT 0 Y12-2d10.q1k chr16 569 880 946483 946482 F 312 0.00 1398 reject_low 398 ALIGNMENT 0 Y12-2d10.q1k chr04 62 549 1530387 1530386 F 488 0.00 1398 reject_low 349 ALIGNMENT 0 Y12-2d10.q1k chr08 62 549 560668 560667 F 488 0.00 1398 reject_low 305 ALIGNMENT 41 Y12-2d10.q1k chr05 546 615 575248 575317 F 70 87.14 1398 reject_low 379 ALIGNMENT 0 Y12-2d10.q1k chr06 880 796 894 893 C 85 0.00 1398 reject_low 183 ALIGNMENT 0 Y12-2d10.q1k chr05 62 530 574945 574944 F 469 0.00 1398 reject_low 80 ALIGNMENT 0 Y12-2d10.q1k chr14 838 62 1999 1998 C 777 0.00 1398 reject_low 270 ALIGNMENT 0 Y12-2d10.q1k chr16 530 62 1712 1711 C 469 0.00 1398 reject_low 251 ALIGNMENT 98 Y12-2d10.q1k chr12 767 1010 1069602 1069846 F 244 82.38 1398 reject_low 205 ALIGNMENT 124 Y12-2d10.q1k chr15 531 786 1089389 1089644 F 256 83.59 1398 reject_low 184 ALIGNMENT 60 Y12-2d10.q1k chr07 839 1011 1088970 1089143 F 173 80.35 1398 reject_low 267 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 1823 1822 C 469 0.00 1398 reject_low 393 ALIGNMENT 0 Y12-2d10.q1k chr08 608 62 1910 1909 C 547 0.00 1398 reject_low 109 ALIGNMENT 0 Y12-2d10.q1k chr05 641 880 575306 575305 F 240 0.00 1398 reject_low 350 ALIGNMENT 0 Y12-2d10.q1k chr16 62 622 945962 945961 F 561 0.00 1398 reject_low 79 ALIGNMENT 0 Y12-2d10.q1k chr15 62 945 1089229 1089228 F 884 0.00 1398 reject_low 368 ALIGNMENT 0 Y12-2d10.q1k chr07 713 880 1089383 1089382 F 168 0.00 1398 reject_low 304 ALIGNMENT 0 Y12-2d10.q1k chr05 880 832 1471 1470 C 49 0.00 1398 reject_low 168 ALIGNMENT 89 Y12-2d10.q1k chr12 999 803 7553 7750 C 197 83.76 1398 reject_low 229 ALIGNMENT 0 Y12-2d10.q1k chr09 534 62 1983 1982 C 473 0.00 1398 reject_low 274 ALIGNMENT 0 Y12-2d10.q1k chr10 534 62 1966 1965 C 473 0.00 1398 reject_low 258 ALIGNMENT 131 Y12-2d10.q1k chr12 531 793 1069762 1070024 F 263 84.03 1398 reject_low 404 ALIGNMENT 276 Y12-2d10.q1k chr08 1311 756 1339 1906 C 556 84.71 1398 reject_low 39 ALIGNMENT 0 Y12-2d10.q1k chr12 755 755 1070022 1076289 F 1 0.00 1398 reject_low 409 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 1929 1928 C 488 0.00 1398 reject_low 263 ALIGNMENT 59 Y12-2d10.q1k chr02 1010 839 2242 2414 C 172 80.23 1398 reject_low 278 ALIGNMENT 0 Y12-2d10.q1k chr05 549 62 1572 1571 C 488 0.00 1398 reject_low 377 ALIGNMENT 0 Y12-2d10.q1k chr16 694 62 1908 1907 C 633 0.00 1398 reject_low 181 ALIGNMENT 0 Y12-2d10.q1k chr02 838 62 2415 2414 C 777 0.00 1398 reject_low 278 ALIGNMENT 94 Y12-2d10.q1k chr15 756 1007 1089254 1089506 F 252 81.35 1398 reject_low 223 ALIGNMENT 0 Y12-2d10.q1k chr13 880 713 1679 1678 C 168 0.00 1398 reject_low 307 ALIGNMENT 43 Y12-2d10.q1k chr12 999 935 2126 2190 C 65 90.77 1398 reject_low 416 ALIGNMENT 0 Y12-2d10.q1k chr16 62 802 945962 945961 F 741 0.00 1398 reject_low 233 ALIGNMENT 132 Y12-2d10.q1k chr13 795 531 1667 1931 C 265 84.15 1398 reject_low 165 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 7428 7427 C 488 0.00 1398 reject_low 401,415 ALIGNMENT 0 Y12-2d10.q1k chr14 530 62 1947 1946 C 469 0.00 1398 reject_low 82 ALIGNMENT 0 Y12-2d10.q1k chr12 62 694 1069602 1069601 F 633 0.00 1398 reject_low 186 ALIGNMENT 55 Y12-2d10.q1k chr10 640 550 1788 1878 C 91 87.91 1398 reject_low 331 ALIGNMENT 0 Y12-2d10.q1k chr10 528 62 2296 2295 C 467 0.00 1398 reject_low 64 ALIGNMENT 261 Y12-2d10.q1k chr02 1014 535 1770 2250 C 480 86.25 1398 reject_low 58 ALIGNMENT 0 Y12-2d10.q1k chr08 62 934 560442 560441 F 873 0.00 1398 reject_low 348 ALIGNMENT 0 Y12-2d10.q1k chr05 62 658 574893 574892 F 597 0.00 1398 reject_low 117 ALIGNMENT 602 Y12-2d10.q1k chr08 831 32 1651 2442 C 800 92.88 1398 reject_low 26 ALIGNMENT 132 Y12-2d10.q1k chr14 795 531 1574 1838 C 265 84.15 1398 reject_low 166 ALIGNMENT 0 Y12-2d10.q1k chr12 866 896 1070025 1076286 F 31 0.00 1398 reject_low 405 ALIGNMENT 0 Y12-2d10.q1k chr08 62 586 560417 560416 F 525 0.00 1398 reject_low 34 ALIGNMENT 0 Y12-2d10.q1k chr07 62 530 1089022 1089021 F 469 0.00 1398 reject_low 85 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 1965 1964 C 488 0.00 1398 reject_low 153 ALIGNMENT 0 Y12-2d10.q1k chr06 880 653 893 892 C 228 0.00 1398 reject_low 311 ALIGNMENT 664 Y12-2d10.p1k chr16 269 1080 3327 4125 F 812 95.07 1278 reject_low 7 ALIGNMENT 98 Y12-2d10.q1k chr06 974 607 893 1261 C 368 77.17 1398 reject_low 240 ALIGNMENT 0 Y12-2d10.q1k chr06 880 689 893 892 C 192 0.00 1398 reject_low 257 ALIGNMENT 0 Y12-2d10.q1k chr09 880 760 1831 1830 C 121 0.00 1398 reject_low 175 ALIGNMENT 221 Y12-2d10.q1k chr10 1010 529 1777 2259 C 482 83.40 1398 reject_low 84 ALIGNMENT 0 Y12-2d10.q1k chr16 766 62 1908 1907 C 705 0.00 1398 reject_low 194 ALIGNMENT 132 Y12-2d10.q1k chr12 531 795 1076425 1076689 F 265 84.15 1398 reject_low 164 ALIGNMENT 0 Y12-2d10.q1k chr07 62 838 1088970 1088969 F 777 0.00 1398 reject_low 267 ALIGNMENT 0 Y12-2d10.q1k chr10 530 62 1934 1933 C 469 0.00 1398 reject_low 301 ALIGNMENT 0 Y12-2d10.q1k chr06 530 62 1086 1085 C 469 0.00 1398 reject_low 132 ALIGNMENT 31 Y12-2d10.q1k chr14 1011 946 1933 1998 C 66 83.33 1398 reject_low 367 ALIGNMENT 0 Y12-2d10.q1k chr04 62 658 1530064 1530063 F 597 0.00 1398 reject_low 122 ALIGNMENT 0 Y12-2d10.q1k chr12 880 832 1684 1683 C 49 0.00 1398 reject_low 153 ALIGNMENT 41 Y12-2d10.q1k chr08 546 615 560772 560841 F 70 87.14 1398 reject_low 380 ALIGNMENT 0 Y12-2d10.q1k chr12 880 713 1695 1694 C 168 0.00 1398 reject_low 261 ALIGNMENT 0 Y12-2d10.q1k chr14 586 62 1999 1998 C 525 0.00 1398 reject_low 37 ALIGNMENT 0 Y12-2d10.q1k chr15 62 658 1089229 1089228 F 597 0.00 1398 reject_low 124 ALIGNMENT 51 Y12-2d10.q1k chr08 897 1010 560439 560553 F 114 84.21 1398 reject_low 298 ALIGNMENT 94 Y12-2d10.q1k chr12 756 1007 1076290 1076542 F 252 81.35 1398 reject_low 409 ALIGNMENT 160 Y12-2d10.q1k chr12 867 531 7326 7662 C 337 83.68 1398 reject_low 51 ALIGNMENT 0 Y12-2d10.q1k chr12 802 713 2216 7336 C 90 0.00 1398 reject_low 413 ALIGNMENT 234 Y12-2d10.q1k chr13 1010 623 1703 2091 C 388 88.40 1398 reject_low 68 ALIGNMENT 0 Y12-2d10.q1k chr07 62 530 1089130 1089129 F 469 0.00 1398 reject_low 169 ALIGNMENT 0 Y12-2d10.q1k chr08 880 832 1652 1651 C 49 0.00 1398 reject_low 26 ALIGNMENT 97 Y12-2d10.q1k chr13 1007 756 1814 2066 C 252 81.75 1398 reject_low 213 ALIGNMENT 0 Y12-2d10.q1k chr13 945 62 2092 2091 C 884 0.00 1398 reject_low 366 ALIGNMENT 0 Y12-2d10.q1k chr02 766 62 2415 2414 C 705 0.00 1398 reject_low 155 ALIGNMENT 0 Y12-2d10.q1k chr15 62 802 1089229 1089228 F 741 0.00 1398 reject_low 239 ALIGNMENT 687 Y12-2d10.q1k chr16 935 32 1487 2402 C 904 92.48 1398 reject_low 21 ALIGNMENT 55 Y12-2d10.q1k chr12 550 676 1076552 1076678 F 127 81.89 1398 reject_low 336 ALIGNMENT 122 Y12-2d10.q1k chr06 795 529 893 1159 C 267 82.77 1398 reject_low 183 ALIGNMENT 0 Y12-2d10.q1k chr13 766 62 2092 2091 C 705 0.00 1398 reject_low 192 ALIGNMENT 0 Y12-2d10.q1k chr05 880 796 1471 1470 C 85 0.00 1398 reject_low 242 ALIGNMENT 0 Y12-2d10.q1k chr12 703 704 2207 7345 C 0 0.00 1398 reject_low 410 ALIGNMENT 0 Y12-2d10.q1k chr06 528 62 1160 1159 C 467 0.00 1398 reject_low 183 ALIGNMENT 43 Y12-2d10.q1k chr12 999 935 7661 7725 C 65 90.77 1398 reject_low 320 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 2219 2218 C 469 0.00 1398 reject_low 131 ALIGNMENT 0 Y12-2d10.q1k chr12 934 616 2191 7325 C 319 0.00 1398 reject_low 416 ALIGNMENT 0 Y12-2d10.q1k chr13 880 832 1668 1667 C 49 0.00 1398 reject_low 199 ALIGNMENT 0 Y12-2d10.q1k chr08 62 755 560442 560441 F 694 0.00 1398 reject_low 174 ALIGNMENT 0 Y12-2d10.q1k chr04 832 880 1530488 1530487 F 49 0.00 1398 reject_low 196 ALIGNMENT 97 Y12-2d10.q1k chr05 756 1007 574918 575170 F 252 81.75 1398 reject_low 210 ALIGNMENT 0 Y12-2d10.q1k chr08 62 549 560704 560703 F 488 0.00 1398 reject_low 335 ALIGNMENT 0 Y12-2d10.q1k chr09 880 713 1842 1841 C 168 0.00 1398 reject_low 327 ALIGNMENT 0 Y12-2d10.q1k chr13 934 62 2067 2066 C 873 0.00 1398 reject_low 322 ALIGNMENT 28 Y12-2d10.q1k chr08 946 999 560417 560470 F 54 85.19 1398 reject_low 388 ALIGNMENT 82 Y12-2d10.q1k chr06 688 531 892 1049 C 158 84.81 1398 reject_low 257 ALIGNMENT 0 Y12-2d10.q1k chr14 880 796 1575 1574 C 85 0.00 1398 reject_low 166 ALIGNMENT 94 Y12-2d10.q1k chr04 756 1007 1530089 1530341 F 252 81.35 1398 reject_low 221 ALIGNMENT 41 Y12-2d10.q1k chr04 546 615 1530419 1530488 F 70 87.14 1398 reject_low 378 ALIGNMENT 22 Y12-2d10.q1k chr10 568 535 1788 1821 C 34 88.24 1398 reject_low 394 ALIGNMENT 45 Y12-2d10.q1k chr09 999 787 2165 2378 C 213 76.06 1398 reject_low 342 ALIGNMENT 0 Y12-2d10.q1k chr16 880 677 1495 1494 C 204 0.00 1398 reject_low 340 ALIGNMENT 0 Y12-2d10.q1k chr12 766 62 7751 7750 C 705 0.00 1398 reject_low 191 ALIGNMENT 55 Y12-2d10.q1k chr12 676 550 7337 7463 C 127 81.89 1398|9,0 reject_low 402,414 ALIGNMENT 0 Y12-2d10.q1k chr13 545 62 1737 1736 C 484 0.00 1398 reject_low 382 ALIGNMENT 0 Y12-2d10.q1k chr15 62 755 1089254 1089253 F 694 0.00 1398 reject_low 223 ALIGNMENT 49 Y12-2d10.q1k chr12 640 550 7337 7427 C 91 85.71 1398|9,0 reject_low 401,415 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 1859 1858 C 469 0.00 1398 reject_low 264 ALIGNMENT 0 Y12-2d10.q1k chr15 62 549 1089516 1089515 F 488 0.00 1398 reject_low 339 ALIGNMENT 0 Y12-2d10.q1k chr04 62 534 1530192 1530191 F 473 0.00 1398 reject_low 196 ALIGNMENT 94 Y12-2d10.q1k chr12 756 1007 1069627 1069879 F 252 81.35 1398 reject_low 222 ALIGNMENT 0 Y12-2d10.q1k chr09 880 796 1831 1830 C 85 0.00 1398 reject_low 182 ALIGNMENT 49 Y12-2d10.q1k chr08 615 535 1651 1731 C 81 87.65 1398 reject_low 344 ALIGNMENT 97 Y12-2d10.q1k chr07 756 1007 1088995 1089247 F 252 81.75 1398 reject_low 211 ALIGNMENT 0 Y12-2d10.q1k chr14 880 616 1575 1574 C 265 0.00 1398 reject_low 383 ALIGNMENT 37 Y12-2d10.q1k chr09 615 550 1830 1895 C 66 86.36 1398 reject_low 392 ALIGNMENT 30 Y12-2d10.p1k chr02 935 990 4033 4086 F 56 87.50 1278 reject_low 45 ALIGNMENT 30 Y12-2d10.p1k chr12 935 990 3832 3885 F 56 87.50 1278 reject_low 11,12,48,49,50,51,52,53,54 ALIGNMENT 0 Y12-2d10.q1k chr05 880 641 1482 1481 C 240 0.00 1398 reject_low 377 ALIGNMENT 166 Y12-2d10.q1k chr16 1010 659 1555 1907 C 352 84.09 1398 reject_low 121 ALIGNMENT 55 Y12-2d10.q1k chr04 550 676 1530351 1530477 F 127 81.89 1398 reject_low 332 ALIGNMENT 0 Y12-2d10.q1k chr12 880 796 7327 7326 C 85 0.00 1398 reject_low 52 ALIGNMENT 163 Y12-2d10.q1k chr12 659 1010 1069602 1069954 F 352 83.81 1398 reject_low 123 ALIGNMENT 0 Y12-2d10.q1k chr14 549 62 1748 1747 C 488 0.00 1398 reject_low 308 ALIGNMENT 43 Y12-2d10.q1k chr16 935 999 945987 946051 F 65 90.77 1398 reject_low 326 ALIGNMENT 0 Y12-2d10.q1k chr12 838 677 2216 7336 C 162 0.00 1398 reject_low 414 ALIGNMENT 0 Y12-2d10.q1k chr05 880 713 1482 1481 C 168 0.00 1398 reject_low 316 ALIGNMENT 0 Y12-2d10.q1k chr09 674 62 2383 2382 C 613 0.00 1398 reject_low 171 ALIGNMENT 0 Y12-2d10.q1k chr13 658 62 2092 2091 C 597 0.00 1398 reject_low 119 ALIGNMENT 0 Y12-2d10.q1k chr02 880 580 1775 1774 C 301 0.00 1398 reject_low 393 ALIGNMENT 0 Y12-2d10.q1k chr15 62 586 1089229 1089228 F 525 0.00 1398 reject_low 88 ALIGNMENT 0 Y12-2d10.q1k chr08 62 838 560417 560416 F 777 0.00 1398 reject_low 279 ALIGNMENT 208 Y12-2d10.q1k chr02 1010 587 1990 2414 C 424 84.67 1398 reject_low 98 ALIGNMENT 0 Y12-2d10.q1k chr12 880 677 1695 1694 C 204 0.00 1398 reject_low 312 ALIGNMENT 0 Y12-2d10.q1k chr08 530 62 1880 1879 C 469 0.00 1398 reject_low 234 ALIGNMENT 20 Y12-2d10.q1k chr16 546 568 946461 946483 F 23 95.65 1398 reject_low 398 ALIGNMENT 43 Y12-2d10.q1k chr05 935 999 574918 574982 F 65 90.77 1398 reject_low 318 ALIGNMENT 690 Y12-2d10.q1k chr12 935 32 7330 8245 C 904 92.59 1398 reject_low 11 ALIGNMENT 28 Y12-2d10.q1k chr02 999 946 2361 2414 C 54 85.19 1398 reject_low 387 ALIGNMENT 55 Y12-2d10.q1k chr07 550 676 1089257 1089383 F 127 81.89 1398 reject_low 334 ALIGNMENT 0 Y12-2d10.q1k chr09 549 62 1896 1895 C 488 0.00 1398 reject_low 392 ALIGNMENT 245 Y12-2d10.q1k chr14 903 531 1574 1946 C 373 89.81 1398 reject_low 82 ALIGNMENT 0 Y12-2d10.q1k chr05 677 880 575306 575305 F 204 0.00 1398 reject_low 333 ALIGNMENT 72 Y12-2d10.q1k chr04 550 712 1530315 1530477 F 163 82.21 1398 reject_low 302 ALIGNMENT 0 Y12-2d10.q1k chr14 755 62 1974 1973 C 694 0.00 1398 reject_low 214 ALIGNMENT 43 Y12-2d10.q1k chr07 935 999 1088995 1089059 F 65 90.77 1398 reject_low 319 ALIGNMENT 0 Y12-2d10.q1k chr04 62 838 1530064 1530063 F 777 0.00 1398 reject_low 290 ALIGNMENT 55 Y12-2d10.q1k chr12 550 676 1069889 1070015 F 127 81.89 1398|0,9 reject_low 403 ALIGNMENT 234 Y12-2d10.q1k chr12 587 1008 1069602 1070024 F 422 86.73 1398 reject_low 75 ALIGNMENT 0 Y12-2d10.q1k chr10 880 623 1771 1770 C 258 0.00 1398 reject_low 371 ALIGNMENT 0 Y12-2d10.q1k chr14 945 62 1999 1998 C 884 0.00 1398 reject_low 367 ALIGNMENT 112 Y12-2d10.q1k chr12 1007 695 7437 7750 C 313 80.51 1398 reject_low 53 ALIGNMENT 160 Y12-2d10.q1k chr14 867 531 1574 1910 C 337 83.68 1398 reject_low 139 ALIGNMENT 57 Y12-2d10.q1k chr12 839 1011 1076265 1076438 F 173 79.77 1398 reject_low 411 ALIGNMENT 0 Y12-2d10.q1k chr05 606 62 2055 2054 C 545 0.00 1398 reject_low 146 ALIGNMENT 49 Y12-2d10.q1k chr16 640 550 1494 1584 C 91 85.71 1398 reject_low 358 ALIGNMENT 57 Y12-2d10.q1k chr12 839 1011 1069602 1069775 F 173 79.77 1398 reject_low 291 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 2164 2163 C 469 0.00 1398 reject_low 31 ALIGNMENT 0 Y12-2d10.q1k chr14 880 641 1586 1585 C 240 0.00 1398 reject_low 356 ALIGNMENT 0 Y12-2d10.q1k chr05 858 62 2055 2054 C 797 0.00 1398 reject_low 386 ALIGNMENT 0 Y12-2d10.q1k chr16 880 641 1495 1494 C 240 0.00 1398 reject_low 358 ALIGNMENT 0 Y12-2d10.p1k chr06 470 934 2873 2868 F 465 0.00 1278 reject_low 42 ALIGNMENT 60 Y12-2d10.q1k chr14 1011 839 1825 1998 C 173 80.35 1398 reject_low 270 ALIGNMENT 112 Y12-2d10.q1k chr05 695 1007 574893 575206 F 313 80.51 1398 reject_low 177 ALIGNMENT 0 Y12-2d10.q1k chr10 549 62 1879 1878 C 488 0.00 1398 reject_low 331 ALIGNMENT 0 Y12-2d10.q1k chr14 880 677 1586 1585 C 204 0.00 1398 reject_low 338 ALIGNMENT 0 Y12-2d10.q1k chr05 549 62 1680 1679 C 488 0.00 1398 reject_low 243 ALIGNMENT 0 Y12-2d10.q1k chr08 755 62 1907 1906 C 694 0.00 1398 reject_low 39 ALIGNMENT 73 Y12-2d10.q1k chr02 617 531 1772 1858 C 87 95.40 1398 reject_low 264 ALIGNMENT 0 Y12-2d10.q1k chr07 62 802 1088970 1088969 F 741 0.00 1398 reject_low 228 ALIGNMENT 0 Y12-2d10.q1k chr08 765 62 1933 1932 C 704 0.00 1398 reject_low 226 ALIGNMENT 72 Y12-2d10.q1k chr14 712 550 1585 1747 C 163 82.21 1398 reject_low 308 ALIGNMENT 89 Y12-2d10.q1k chr16 803 999 945962 946159 F 197 83.76 1398 reject_low 233 ALIGNMENT 181 Y12-2d10.q1k chr09 867 531 1830 2166 C 337 85.76 1398 reject_low 128 ALIGNMENT 0 Y12-2d10.q1k chr12 62 545 1069957 1069956 F 484 0.00 1398 reject_low 417 ALIGNMENT 0 Y12-2d10.q1k chr12 62 549 1076516 1076515 F 488 0.00 1398 reject_low 306 ALIGNMENT 0 Y12-2d10.q1k chr13 530 62 1896 1895 C 469 0.00 1398 reject_low 249 ALIGNMENT 0 Y12-2d10.q1k chr07 62 622 1088970 1088969 F 561 0.00 1398 reject_low 67 ALIGNMENT 284 Y12-2d10.q1k chr05 1010 529 1506 1988 C 482 87.76 1398 reject_low 56 ALIGNMENT 188 Y12-2d10.p1k chr06 269 469 2672 2872 F 201 98.01 1278 reject_low 42 ALIGNMENT 37 Y12-2d10.q1k chr02 999 935 2325 2389 C 65 87.69 1398 reject_low 347 ALIGNMENT 0 Y12-2d10.q1k chr07 62 530 1089058 1089057 F 469 0.00 1398 reject_low 141 ALIGNMENT 0 Y12-2d10.q1k chr05 62 622 574893 574892 F 561 0.00 1398 reject_low 66 ALIGNMENT 234 Y12-2d10.q1k chr12 1010 623 7362 7750 C 388 88.40 1398 reject_low 48 ALIGNMENT 27 Y12-2d10.q1k chr02 579 531 1774 1822 C 49 85.71 1398 reject_low 393 ALIGNMENT 0 Y12-2d10.q1k chr16 62 534 946270 946269 F 473 0.00 1398 reject_low 207 ALIGNMENT 0 Y12-2d10.q1k chr16 62 530 946302 946301 F 469 0.00 1398 reject_low 262 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 2147 2146 C 469 0.00 1398 reject_low 157 ALIGNMENT 0 Y12-2d10.q1k chr06 530 62 978 977 C 469 0.00 1398 reject_low 315 ALIGNMENT 0 Y12-2d10.q1k chr05 880 765 1466 1465 C 116 0.00 1398 reject_low 243 ALIGNMENT 166 Y12-2d10.q1k chr07 659 1010 1088970 1089322 F 352 84.09 1398 reject_low 118 ALIGNMENT 0 Y12-2d10.q1k chr08 62 945 560417 560416 F 884 0.00 1398 reject_low 388 ALIGNMENT 31 Y12-2d10.q1k chr12 946 1011 1076265 1076330 F 66 83.33 1398 reject_low 365 ALIGNMENT 98 Y12-2d10.q1k chr04 767 1010 1530064 1530308 F 244 82.38 1398 reject_low 204 ALIGNMENT 237 Y12-2d10.q1k chr07 587 1008 1088970 1089392 F 422 86.97 1398 reject_low 71 ALIGNMENT 0 Y12-2d10.q1k chr12 622 62 7751 7750 C 561 0.00 1398 reject_low 48 ALIGNMENT 0 Y12-2d10.q1k chr12 880 616 1684 1683 C 265 0.00 1398 reject_low 375 ALIGNMENT 0 Y12-2d10.q1k chr10 638 62 2366 2365 C 577 0.00 1398 reject_low 160 ALIGNMENT 0 Y12-2d10.q1k chr13 838 62 2092 2091 C 777 0.00 1398 reject_low 269 ALIGNMENT 101 Y12-2d10.q1k chr14 1010 767 1754 1998 C 244 82.79 1398 reject_low 193 ALIGNMENT 49 Y12-2d10.q1k chr04 550 640 1530387 1530477 F 91 85.71 1398 reject_low 349 ALIGNMENT 0 Y12-2d10.q1k chr13 530 62 2040 2039 C 469 0.00 1398 reject_low 81 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 2020 2019 C 469 0.00 1398 reject_low 112 ALIGNMENT 0 Y12-2d10.q1k chr16 549 62 1621 1620 C 488 0.00 1398 reject_low 340 ALIGNMENT 0 Y12-2d10.q1k chr04 62 549 1530351 1530350 F 488 0.00 1398 reject_low 332 ALIGNMENT 245 Y12-2d10.q1k chr16 903 531 1483 1855 C 373 89.81 1398 reject_low 83 ALIGNMENT 188 Y12-2d10.p1k chr12 269 469 3635 3835 F 201 98.01 1278 reject_low 11,12 ALIGNMENT 0 Y12-2d10.q1k chr15 62 549 1089552 1089551 F 488 0.00 1398 reject_low 357 ALIGNMENT 0 Y12-2d10.q1k chr14 880 765 1570 1569 C 116 0.00 1398 reject_low 250 ALIGNMENT 0 Y12-2d10.q1k chr05 534 62 1839 1838 C 473 0.00 1398 reject_low 115 ALIGNMENT 0 Y12-2d10.q1k chr12 62 896 1069624 1069623 F 835 0.00 1398 reject_low 299 ALIGNMENT 0 Y12-2d10.q1k chr13 896 62 2070 2069 C 835 0.00 1398 reject_low 286 ALIGNMENT 0 Y12-2d10.q1k chr13 755 62 2067 2066 C 694 0.00 1398 reject_low 213 ALIGNMENT 0 Y12-2d10.q1k chr14 530 62 1839 1838 C 469 0.00 1398 reject_low 166 ALIGNMENT 0 Y12-2d10.q1k chr05 62 530 575053 575052 F 469 0.00 1398 reject_low 163 ALIGNMENT 0 Y12-2d10.q1k chr09 530 62 2023 2022 C 469 0.00 1398 reject_low 327 ALIGNMENT 20 Y12-2d10.q1k chr08 568 546 1662 1684 C 23 95.65 1398 reject_low 396 ALIGNMENT 0 Y12-2d10.q1k chr15 748 880 1089641 1089640 F 133 0.00 1398 reject_low 254 ALIGNMENT 92 Y12-2d10.q1k chr08 974 726 1651 1900 C 249 81.12 1398 reject_low 241 ALIGNMENT 0 Y12-2d10.q1k chr06 528 62 1124 1123 C 467 0.00 1398 reject_low 150 ALIGNMENT 58 Y12-2d10.q1k chr09 712 531 1841 2022 C 182 78.02 1398 reject_low 327 ALIGNMENT 0 Y12-2d10.q1k chr14 622 62 1999 1998 C 561 0.00 1398 reject_low 69 ALIGNMENT 40 Y12-2d10.q1k chr08 999 935 1842 1906 C 65 89.23 1398 reject_low 330 ALIGNMENT 45 Y12-2d10.q1k chr10 999 787 2148 2361 C 213 76.06 1398 reject_low 343 ALIGNMENT 58 Y12-2d10.q1k chr08 1010 833 1759 1937 C 178 79.78 1398 reject_low 293 ALIGNMENT 132 Y12-2d10.q1k chr09 759 550 1830 2039 C 210 88.57 1398 reject_low 175 ALIGNMENT 0 Y12-2d10.q1k chr05 880 677 1482 1481 C 204 0.00 1398 reject_low 295 ALIGNMENT 0 Y12-2d10.q1k chr04 713 880 1530477 1530476 F 168 0.00 1398 reject_low 302 ALIGNMENT 0 Y12-2d10.q1k chr12 62 549 1069853 1069852 F 488 0.00 1398 reject_low 412 ALIGNMENT 94 Y12-2d10.q1k chr08 531 764 560613 560846 F 234 80.77 1398 reject_low 247 ALIGNMENT 0 Y12-2d10.q1k chr14 658 62 1999 1998 C 597 0.00 1398 reject_low 120 ALIGNMENT 0 Y12-2d10.q1k chr10 530 62 2330 2329 C 469 0.00 1398 reject_low 78 ALIGNMENT 0 Y12-2d10.q1k chr05 530 62 1879 1878 C 469 0.00 1398 reject_low 129 ALIGNMENT 97 Y12-2d10.q1k chr12 1007 756 1938 2190 C 252 81.75 1398|0,5 reject_low 407 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1076461 1076460 F 469 0.00 1398 reject_low 248 ALIGNMENT 0 Y12-2d10.q1k chr07 62 549 1089293 1089292 F 488 0.00 1398 reject_low 351 ALIGNMENT 0 Y12-2d10.q1k chr13 802 62 2092 2091 C 741 0.00 1398 reject_low 230 ALIGNMENT 0 Y12-2d10.q1k chr04 62 622 1530064 1530063 F 561 0.00 1398 reject_low 72 ALIGNMENT 681 Y12-2d10.q1k chr04 32 935 1529569 1530484 F 904 92.26 1398 reject_low 23 ALIGNMENT 0 Y12-2d10.q1k chr10 530 62 2186 2185 C 469 0.00 1398 reject_low 65 ALIGNMENT 72 Y12-2d10.q1k chr05 550 712 575144 575306 F 163 82.21 1398 reject_low 303 ALIGNMENT 0 Y12-2d10.q1k chr16 945 62 1908 1907 C 884 0.00 1398 reject_low 369 ALIGNMENT 41 Y12-2d10.q1k chr14 615 546 1574 1643 C 70 87.14 1398 reject_low 383 ALIGNMENT 0 Y12-2d10.q1k chr12 667 668 2207 7345 C 0 0.00 1398 reject_low 402 ALIGNMENT 0 Y12-2d10.q1k chr12 62 549 1076588 1076587 F 488 0.00 1398 reject_low 354 ALIGNMENT 0 Y12-2d10.q1k chr13 549 62 1805 1804 C 488 0.00 1398 reject_low 337 ALIGNMENT 0 Y12-2d10.q1k chr04 616 880 1530488 1530487 F 265 0.00 1398 reject_low 378 ALIGNMENT 450 Y12-2d10.q1k chr05 1311 529 1158 1952 C 783 87.10 1398 reject_low 33 ALIGNMENT 0 Y12-2d10.q1k chr16 802 62 1908 1907 C 741 0.00 1398 reject_low 232 ALIGNMENT 0 Y12-2d10.q1k chr04 62 530 1530116 1530115 F 469 0.00 1398 reject_low 86 ALIGNMENT 113 Y12-2d10.q1k chr08 767 1010 560417 560661 F 244 84.43 1398 reject_low 156 ALIGNMENT 113 Y12-2d10.q1k chr02 723 531 1774 1966 C 193 87.05 1398 reject_low 209 ALIGNMENT 0 Y12-2d10.q1k chr12 830 838 1070025 1076264 F 9 0.00 1398 reject_low 411 ALIGNMENT 0 Y12-2d10.q1k chr16 934 62 1883 1882 C 873 0.00 1398 reject_low 325 ALIGNMENT 41 Y12-2d10.q1k chr13 615 546 1667 1736 C 70 87.14 1398 reject_low 382 ALIGNMENT 0 Y12-2d10.q1k chr02 880 798 1773 1772 C 83 0.00 1398 reject_low 217 ALIGNMENT 75 Y12-2d10.q1k chr09 1010 711 2082 2382 C 300 77.00 1398 reject_low 255 ALIGNMENT 253 Y12-2d10.q1k chr10 871 535 1773 2109 C 337 92.88 1398 reject_low 76 ALIGNMENT 101 Y12-2d10.q1k chr05 767 1010 574893 575137 F 244 82.79 1398 reject_low 189 ALIGNMENT 0 Y12-2d10.q1k chr12 766 765 2216 7320 C 2 0.00 1398 reject_low 406 ALIGNMENT 50 Y12-2d10.q1k chr12 640 535 1694 1799 C 106 83.02 1398 reject_low 345 ALIGNMENT 190 Y12-2d10.q1k chr08 659 1010 560417 560769 F 352 86.36 1398 reject_low 103 ALIGNMENT 547 Y12-2d10.q1k chr06 903 32 893 1747 C 872 88.65 1398 reject_low 30 ALIGNMENT 72 Y12-2d10.q1k chr13 712 550 1678 1840 C 163 82.21 1398 reject_low 307 ALIGNMENT 0 Y12-2d10.q1k chr04 62 766 1530064 1530063 F 705 0.00 1398 reject_low 204 ALIGNMENT 0 Y12-2d10.p1k chr08 934 470 558799 558794 C 465 0.00 1278 reject_low 46 ALIGNMENT 0 Y12-2d10.q1k chr12 641 880 1076678 1076677 F 240 0.00 1398 reject_low 354 ALIGNMENT 231 Y12-2d10.q1k chr15 623 1010 1089229 1089617 F 388 88.14 1398 reject_low 74 ALIGNMENT 0 Y12-2d10.q1k chr16 713 880 946483 946482 F 168 0.00 1398 reject_low 262 ALIGNMENT 94 Y12-2d10.q1k chr13 764 531 1662 1895 C 234 80.77 1398 reject_low 249 ALIGNMENT 0 Y12-2d10.q1k chr12 760 761 2186 7324 C 0 0.00 1398 reject_low 407 ALIGNMENT 86 Y12-2d10.q1k chr04 803 999 1530064 1530261 F 197 83.25 1398 reject_low 236 ALIGNMENT 30 Y12-2d10.q1k chr09 1011 823 2189 2378 C 189 74.07 1398 reject_low 390 ALIGNMENT 245 Y12-2d10.q1k chr12 903 531 7326 7698 C 373 89.81 1398 reject_low 49 ALIGNMENT 175 Y12-2d10.q1k chr02 763 529 1770 2004 C 235 92.34 1398 reject_low 125 ALIGNMENT 0 Y12-2d10.q1k chr16 838 62 1908 1907 C 777 0.00 1398 reject_low 271 ALIGNMENT 0 Y12-2d10.q1k chr16 880 796 1484 1483 C 85 0.00 1398 reject_low 167 ALIGNMENT 202 Y12-2d10.q1k chr10 981 529 1770 2223 C 453 83.00 1398 reject_low 100 ALIGNMENT 124 Y12-2d10.q1k chr08 695 1007 560417 560730 F 313 81.79 1398 reject_low 154 ALIGNMENT 0 Y12-2d10.q1k chr05 880 616 1471 1470 C 265 0.00 1398 reject_low 374 ALIGNMENT 0 Y12-2d10.q1k chr04 796 880 1530488 1530487 F 85 0.00 1398 reject_low 162 ALIGNMENT 70 Y12-2d10.q1k chr16 550 676 946357 946483 F 127 85.83 1398 reject_low 313 ALIGNMENT 0 Y12-2d10.q1k chr02 549 62 2020 2019 C 488 0.00 1398 reject_low 217 ALIGNMENT 72 Y12-2d10.q1k chr12 550 712 1069853 1070015 F 163 82.21 1398|0,9 reject_low 412 ALIGNMENT 0 Y12-2d10.q1k chr12 880 765 1679 1678 C 116 0.00 1398 reject_low 219 ALIGNMENT 687 Y12-2d10.q1k chr14 935 32 1578 2493 C 904 92.48 1398 reject_low 20 ALIGNMENT 63 Y12-2d10.q1k chr06 1010 766 1001 1246 C 245 77.55 1398 reject_low 280 ALIGNMENT 687 Y12-2d10.q1k chr05 32 935 574398 575313 F 904 92.48 1398 reject_low 18 ALIGNMENT 165 Y12-2d10.q1k chr09 1010 607 1974 2378 C 404 81.93 1398 reject_low 126 ALIGNMENT 0 Y12-2d10.q1k chr12 545 62 7396 7395 C 484 0.00 1398 reject_low 416 ALIGNMENT 0 Y12-2d10.q1k chr10 880 569 1789 1788 C 312 0.00 1398 reject_low 394 ALIGNMENT 0 Y12-2d10.q1k chr09 549 62 2040 2039 C 488 0.00 1398 reject_low 175 ALIGNMENT 234 Y12-2d10.q1k chr14 1010 623 1610 1998 C 388 88.40 1398 reject_low 69 ALIGNMENT 0 Y12-2d10.q1k chr05 62 534 575021 575020 F 473 0.00 1398 reject_low 197 ALIGNMENT 94 Y12-2d10.q1k chr12 531 764 1076461 1076694 F 234 80.77 1398 reject_low 248 ALIGNMENT 49 Y12-2d10.q1k chr07 550 640 1089293 1089383 F 91 85.71 1398 reject_low 351 ALIGNMENT 0 Y12-2d10.q1k chr13 549 62 1841 1840 C 488 0.00 1398 reject_low 307 ALIGNMENT 94 Y12-2d10.q1k chr14 764 531 1569 1802 C 234 80.77 1398 reject_low 250 ALIGNMENT 132 Y12-2d10.q1k chr05 531 795 575053 575317 F 265 84.15 1398 reject_low 163 ALIGNMENT 55 Y12-2d10.q1k chr13 676 550 1678 1804 C 127 81.89 1398 reject_low 337 ALIGNMENT 94 Y12-2d10.q1k chr12 764 531 7321 7554 C 234 80.77 1398|4,0 reject_low 406,407 ALIGNMENT 0 Y12-2d10.q1k chr08 641 880 560830 560829 F 240 0.00 1398 reject_low 353 ALIGNMENT 185 Y12-2d10.q1k chr02 940 535 1772 2178 C 406 83.25 1398 reject_low 114 ALIGNMENT 0 Y12-2d10.q1k chr10 786 62 2362 2361 C 725 0.00 1398 reject_low 343 ALIGNMENT 0 Y12-2d10.q1k chr12 62 838 1069602 1069601 F 777 0.00 1398 reject_low 291 ALIGNMENT 0 Y12-2d10.q1k chr08 530 62 1808 1807 C 469 0.00 1398 reject_low 276 ALIGNMENT 60 Y12-2d10.q1k chr16 1011 839 1734 1907 C 173 80.35 1398 reject_low 271 ALIGNMENT 0 Y12-2d10.q1k chr05 62 766 574893 574892 F 705 0.00 1398 reject_low 189 ALIGNMENT 0 Y12-2d10.q1k chr08 545 62 1685 1684 C 484 0.00 1398 reject_low 396 ALIGNMENT 0 Y12-2d10.q1k chr06 638 62 1266 1265 C 577 0.00 1398 reject_low 40 ALIGNMENT 43 Y12-2d10.q1k chr05 640 550 1481 1571 C 91 83.52 1398 reject_low 377 ALIGNMENT 0 Y12-2d10.q1k chr12 632 631 1070007 1076273 F 0 0.00 1398 reject_low 400 ALIGNMENT 0 Y12-2d10.q1k chr10 822 62 2362 2361 C 761 0.00 1398 reject_low 391 ALIGNMENT 168 Y12-2d10.q1k chr05 935 531 1474 1878 C 405 81.73 1398 reject_low 129 ALIGNMENT 37 Y12-2d10.q1k chr06 580 531 892 941 C 50 92.00 1398 reject_low 373 ALIGNMENT 0 Y12-2d10.q1k chr07 62 896 1088992 1088991 F 835 0.00 1398 reject_low 284 ALIGNMENT 166 Y12-2d10.q1k chr05 659 1010 574893 575245 F 352 84.09 1398 reject_low 117 ALIGNMENT 193 Y12-2d10.q1k chr12 867 531 1683 2019 C 337 86.94 1398 reject_low 112 ALIGNMENT 0 Y12-2d10.q1k chr14 530 62 1803 1802 C 469 0.00 1398 reject_low 250 ALIGNMENT 156 Y12-2d10.q1k chr12 531 865 1069690 1070024 F 335 83.28 1398 reject_low 405 ALIGNMENT 217 Y12-2d10.q1k chr16 587 1010 945962 946386 F 424 85.38 1398 reject_low 90 ALIGNMENT 231 Y12-2d10.q1k chr04 623 1010 1530064 1530452 F 388 88.14 1398 reject_low 72 ALIGNMENT 43 Y12-2d10.q1k chr15 935 999 1089254 1089318 F 65 90.77 1398 reject_low 324 ALIGNMENT 0 Y12-2d10.q1k chr04 62 530 1530152 1530151 F 469 0.00 1398 reject_low 144 ALIGNMENT 78 Y12-2d10.q1k chr10 766 531 1770 2005 C 236 78.39 1398 reject_low 273 ALIGNMENT 0 Y12-2d10.q1k chr12 62 755 1069627 1069626 F 694 0.00 1398 reject_low 222 ALIGNMENT 0 Y12-2d10.q1k chr06 606 62 1262 1261 C 545 0.00 1398 reject_low 240 ALIGNMENT 0 Y12-2d10.q1k chr12 62 534 1069730 1069729 F 473 0.00 1398 reject_low 411 ALIGNMENT 0 Y12-2d10.q1k chr08 62 534 560581 560580 F 473 0.00 1398 reject_low 188 ALIGNMENT 661 Y12-2d10.p1k chr04 1080 269 1527846 1528644 C 812 94.95 1278 reject_low 8 ALIGNMENT 0 Y12-2d10.q1k chr16 534 62 1780 1779 C 473 0.00 1398 reject_low 201 ALIGNMENT 0 Y12-2d10.q1k chr10 765 62 2347 2346 C 704 0.00 1398 reject_low 282 ALIGNMENT 101 Y12-2d10.q1k chr12 1010 767 1971 2215 C 244 82.79 1398 reject_low 406 ALIGNMENT 0 Y12-2d10.q1k chr16 677 880 946483 946482 F 204 0.00 1398 reject_low 313 ALIGNMENT 0 Y12-2d10.q1k chr09 880 832 1831 1830 C 49 0.00 1398 reject_low 104 ALIGNMENT 0 Y12-2d10.q1k chr05 530 62 2023 2022 C 469 0.00 1398 reject_low 57 ALIGNMENT 0 Y12-2d10.q1k chr05 62 530 574981 574980 F 469 0.00 1398 reject_low 137 ALIGNMENT 0 Y12-2d10.q1k chr14 880 713 1586 1585 C 168 0.00 1398 reject_low 308 ALIGNMENT 0 Y12-2d10.q1k chr08 801 62 1933 1932 C 740 0.00 1398 reject_low 253 ALIGNMENT 43 Y12-2d10.q1k chr12 615 550 1683 1748 C 66 89.39 1398 reject_low 375 ALIGNMENT 0 Y12-2d10.q1k chr06 674 62 1266 1265 C 613 0.00 1398 reject_low 220 ALIGNMENT 112 Y12-2d10.q1k chr16 1007 695 1594 1907 C 313 80.51 1398 reject_low 181 ALIGNMENT 0 Y12-2d10.q1k chr08 62 766 560417 560416 F 705 0.00 1398 reject_low 156 ALIGNMENT 0 Y12-2d10.q1k chr07 62 534 1089098 1089097 F 473 0.00 1398 reject_low 203 ALIGNMENT 73 Y12-2d10.q1k chr02 651 531 1774 1894 C 121 87.60 1398 reject_low 275 ALIGNMENT 86 Y12-2d10.q1k chr12 803 999 1069602 1069799 F 197 83.25 1398 reject_low 238 ALIGNMENT 0 Y12-2d10.q1k chr15 62 896 1089251 1089250 F 835 0.00 1398 reject_low 300 ALIGNMENT 55 Y12-2d10.q1k chr08 550 676 560704 560830 F 127 81.89 1398 reject_low 335 ALIGNMENT 0 Y12-2d10.q1k chr05 530 62 1807 1806 C 469 0.00 1398 reject_low 134 ALIGNMENT 149 Y12-2d10.q1k chr16 550 831 946213 946494 F 282 85.46 1398 reject_low 152 ALIGNMENT 60 Y12-2d10.q1k chr09 640 531 1841 1950 C 110 85.45 1398 reject_low 314 ALIGNMENT 0 Y12-2d10.q1k chr13 534 62 1964 1963 C 473 0.00 1398 reject_low 199 ALIGNMENT 49 Y12-2d10.q1k chr05 550 640 575216 575306 F 91 85.71 1398 reject_low 350 ALIGNMENT 0 Y12-2d10.q1k chr07 62 945 1088970 1088969 F 884 0.00 1398 reject_low 361 ALIGNMENT 0 Y12-2d10.q1k chr10 530 62 2006 2005 C 469 0.00 1398 reject_low 273 ALIGNMENT 0 Y12-2d10.q1k chr16 880 616 1484 1483 C 265 0.00 1398 reject_low 384 ALIGNMENT 0 Y12-2d10.q1k chr05 549 62 1716 1715 C 488 0.00 1398 reject_low 242 ALIGNMENT 76 Y12-2d10.q1k chr09 676 535 1841 1982 C 142 85.21 1398 reject_low 274 ALIGNMENT 89 Y12-2d10.q1k chr13 999 803 1894 2091 C 197 83.76 1398 reject_low 230 ALIGNMENT 0 Y12-2d10.q1k chr09 880 641 1842 1841 C 240 0.00 1398 reject_low 314 ALIGNMENT 0 Y12-2d10.q1k chr05 530 62 1915 1914 C 469 0.00 1398 reject_low 60 ALIGNMENT 0 Y12-2d10.q1k chr15 62 549 1089480 1089479 F 488 0.00 1398 reject_low 309 ALIGNMENT 0 Y12-2d10.q1k chr16 62 549 946429 946428 F 488 0.00 1398 reject_low 376 ALIGNMENT 165 Y12-2d10.q1k chr10 1010 607 1957 2361 C 404 81.93 1398 reject_low 127 ALIGNMENT 0 Y12-2d10.q1k chr05 765 880 575322 575321 F 116 0.00 1398 reject_low 246 ALIGNMENT 233 Y12-2d10.q1k chr10 1010 529 1813 2295 C 482 84.23 1398 reject_low 64 ALIGNMENT 63 Y12-2d10.q1k chr10 1010 766 2101 2346 C 245 77.55 1398 reject_low 282 ALIGNMENT 49 Y12-2d10.q1k chr13 640 550 1678 1768 C 91 85.71 1398 reject_low 355 ALIGNMENT 54 Y12-2d10.q1k chr16 1010 897 1771 1885 C 114 85.09 1398 reject_low 288 ALIGNMENT 0 Y12-2d10.q1k chr16 622 62 1908 1907 C 561 0.00 1398 reject_low 70 ALIGNMENT 51 Y12-2d10.q1k chr02 1010 897 2278 2392 C 114 84.21 1398 reject_low 296 ALIGNMENT 0 Y12-2d10.q1k chr16 62 549 946249 946248 F 488 0.00 1398 reject_low 259 ALIGNMENT 234 Y12-2d10.q1k chr15 531 894 1089281 1089644 F 364 89.29 1398 reject_low 91 ALIGNMENT 0 Y12-2d10.q1k chr10 880 677 1789 1788 C 204 0.00 1398 reject_low 301 ALIGNMENT 0 Y12-2d10.q1k chr12 614 934 1070025 1076289 F 321 0.00 1398 reject_low 417 ALIGNMENT 0 Y12-2d10.q1k chr02 880 688 1775 1774 C 193 0.00 1398 reject_low 225 ALIGNMENT 0 Y12-2d10.q1k chr15 62 534 1089357 1089356 F 473 0.00 1398 reject_low 218 ALIGNMENT 112 Y12-2d10.q1k chr13 1007 695 1778 2091 C 313 80.51 1398 reject_low 179 ALIGNMENT 0 Y12-2d10.q1k chr08 62 549 560740 560739 F 488 0.00 1398 reject_low 353 ALIGNMENT 0 Y12-2d10.q1k chr14 934 62 1974 1973 C 873 0.00 1398 reject_low 323 ALIGNMENT 0 Y12-2d10.q1k chr13 880 765 1663 1662 C 116 0.00 1398 reject_low 249 ALIGNMENT 661 Y12-2d10.p1k chr12 1080 269 1074047 1074845 C 812 94.95 1278 accept_tel 0 ALIGNMENT 0 Y12-2d10.q1k chr08 62 549 560560 560559 F 488 0.00 1398 reject_low 244 ALIGNMENT 0 Y12-2d10.q1k chr09 530 62 1951 1950 C 469 0.00 1398 reject_low 314 ALIGNMENT 0 Y12-2d10.q1k chr12 545 62 1897 1896 C 484 0.00 1398 reject_low 219 ALIGNMENT 31 Y12-2d10.q1k chr16 946 1011 945962 946027 F 66 83.33 1398 reject_low 370 ALIGNMENT 163 Y12-2d10.q1k chr15 659 1010 1089229 1089581 F 352 83.81 1398 reject_low 124 ALIGNMENT 0 Y12-2d10.q1k chr13 880 677 1679 1678 C 204 0.00 1398 reject_low 337 ALIGNMENT 0 Y12-2d10.q1k chr13 549 62 1769 1768 C 488 0.00 1398 reject_low 355 ALIGNMENT 0 Y12-2d10.q1k chr02 586 62 2415 2414 C 525 0.00 1398 reject_low 98 ALIGNMENT 227 Y12-2d10.q1k chr15 587 1001 1089229 1089644 F 415 86.51 1398 reject_low 88 ALIGNMENT 29 Y12-2d10.q1k chr05 1011 859 1901 2054 C 153 75.16 1398 reject_low 386 ALIGNMENT 84 Y12-2d10.q1k chr10 712 535 1788 1965 C 178 83.15 1398 reject_low 258 ALIGNMENT 43 Y12-2d10.q1k chr14 999 935 1909 1973 C 65 90.77 1398 reject_low 323 ALIGNMENT 112 Y12-2d10.q1k chr07 695 1007 1088970 1089283 F 313 80.51 1398 reject_low 178 ALIGNMENT 172 Y12-2d10.q1k chr08 531 867 560505 560841 F 337 84.87 1398 reject_low 130 ALIGNMENT 31 Y12-2d10.q1k chr12 1011 946 2150 2215 C 66 83.33 1398 reject_low 362 ALIGNMENT 0 Y12-2d10.q1k chr14 802 62 1999 1998 C 741 0.00 1398 reject_low 231 ALIGNMENT 57 Y12-2d10.q1k chr15 839 1011 1089229 1089402 F 173 79.77 1398 reject_low 292 ALIGNMENT 0 Y12-2d10.q1k chr14 549 62 1712 1711 C 488 0.00 1398 reject_low 338 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 1967 1966 C 469 0.00 1398 reject_low 209 ALIGNMENT 104 Y12-2d10.q1k chr05 795 550 1470 1715 C 246 81.71 1398 reject_low 242 ALIGNMENT 86 Y12-2d10.q1k chr15 531 747 1089425 1089641 F 217 80.65 1398 reject_low 254 ALIGNMENT 728 Y12-2d10.q1k chr10 1015 32 1880 2864 C 984 91.77 1398 reject_low 17 ALIGNMENT 0 Y12-2d10.q1k chr12 62 934 1069627 1069626 F 873 0.00 1398 reject_low 321 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1076425 1076424 F 469 0.00 1398 reject_low 164 ALIGNMENT 0 Y12-2d10.p1k chr08 470 934 3568 3563 F 465 0.00 1278 reject_low 43 ALIGNMENT 30 Y12-2d10.p1k chr16 990 935 944292 944345 C 56 87.50 1278 reject_low 41 ALIGNMENT 29 Y12-2d10.q1k chr08 1011 956 1866 1921 C 56 85.71 1398 reject_low 372 ALIGNMENT 0 Y12-2d10.q1k chr12 677 880 1076678 1076677 F 204 0.00 1398 reject_low 336 ALIGNMENT 725 Y12-2d10.q1k chr09 1015 32 1897 2881 C 984 91.67 1398 reject_low 22 ALIGNMENT 0 Y12-2d10.q1k chr12 616 880 1076689 1076688 F 265 0.00 1398 reject_low 381 ALIGNMENT 63 Y12-2d10.q1k chr05 712 550 1481 1643 C 163 80.37 1398 reject_low 316 ALIGNMENT 0 Y12-2d10.q1k chr08 832 880 560841 560840 F 49 0.00 1398 reject_low 244 ALIGNMENT 0 Y12-2d10.q1k chr09 880 616 1831 1830 C 265 0.00 1398 reject_low 392 ALIGNMENT 55 Y12-2d10.q1k chr15 550 676 1089516 1089642 F 127 81.89 1398 reject_low 339 ALIGNMENT 41 Y12-2d10.q1k chr16 615 546 1483 1552 C 70 87.14 1398 reject_low 384 ALIGNMENT 0 Y12-2d10.q1k chr04 765 880 1530493 1530492 F 116 0.00 1398 reject_low 245 ALIGNMENT 0 Y12-2d10.q1k chr05 62 694 574893 574892 F 633 0.00 1398 reject_low 177 ALIGNMENT 60 Y12-2d10.q1k chr16 839 1011 945962 946135 F 173 80.35 1398 reject_low 272 ALIGNMENT 0 Y12-2d10.q1k chr04 62 549 1530315 1530314 F 488 0.00 1398 reject_low 302 ALIGNMENT 0 Y12-2d10.q1k chr07 62 755 1088995 1088994 F 694 0.00 1398 reject_low 211 ALIGNMENT 0 Y12-2d10.q1k chr14 545 62 1644 1643 C 484 0.00 1398 reject_low 383 ALIGNMENT 738 Y12-2d10.q1k chr12 1010 32 1719 2710 C 979 92.34 1398 reject_low 15 ALIGNMENT 0 Y12-2d10.q1k chr05 713 880 575306 575305 F 168 0.00 1398 reject_low 303 ALIGNMENT 0 Y12-2d10.q1k chr12 586 62 7751 7750 C 525 0.00 1398 reject_low 12 ALIGNMENT 49 Y12-2d10.q1k chr14 640 550 1585 1675 C 91 85.71 1398 reject_low 356 ALIGNMENT 109 Y12-2d10.q1k chr08 756 1007 560442 560694 F 252 83.33 1398 reject_low 174 ALIGNMENT 0 Y12-2d10.q1k chr10 606 62 2362 2361 C 545 0.00 1398 reject_low 127 ALIGNMENT 0 Y12-2d10.q1k chr08 62 622 560417 560416 F 561 0.00 1398 reject_low 59 ALIGNMENT 101 Y12-2d10.q1k chr16 767 1010 945962 946206 F 244 82.79 1398 reject_low 195 ALIGNMENT 114 Y12-2d10.q1k chr10 1010 675 2029 2365 C 336 79.76 1398 reject_low 172 ALIGNMENT 0 Y12-2d10.q1k chr12 796 880 1076689 1076688 F 85 0.00 1398 reject_low 164 ALIGNMENT 31 Y12-2d10.q1k chr12 946 1011 1069602 1069667 F 66 83.33 1398 reject_low 364 ALIGNMENT 0 Y12-2d10.q1k chr08 880 569 1663 1662 C 312 0.00 1398 reject_low 396 ALIGNMENT 0 Y12-2d10.q1k chr09 530 62 2203 2202 C 469 0.00 1398 reject_low 97 ALIGNMENT 130 Y12-2d10.q1k chr02 1010 695 2098 2414 C 316 82.28 1398 reject_low 151 ALIGNMENT 54 Y12-2d10.q1k chr12 1010 897 7614 7728 C 114 85.09 1398 reject_low 285 ALIGNMENT 60 Y12-2d10.q1k chr13 1011 839 1918 2091 C 173 80.35 1398 reject_low 269 ALIGNMENT 86 Y12-2d10.q1k chr02 999 803 2217 2414 C 197 83.25 1398 reject_low 235 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 7464 7463 C 488 0.00 1398 reject_low 402,414 ALIGNMENT 244 Y12-2d10.q1k chr02 1011 531 1845 2326 C 481 85.03 1398 reject_low 61 ALIGNMENT 189 Y12-2d10.q1k chr09 974 529 1830 2276 C 446 82.29 1398 reject_low 108 ALIGNMENT 0 Y12-2d10.q1k chr08 62 658 560417 560416 F 597 0.00 1398 reject_low 103 ALIGNMENT 0 Y12-2d10.q1k chr15 62 838 1089229 1089228 F 777 0.00 1398 reject_low 292 ALIGNMENT 121 Y12-2d10.q1k chr07 535 829 1089098 1089392 F 295 81.36 1398 reject_low 203 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 2327 2326 C 469 0.00 1398 reject_low 61 ALIGNMENT 55 Y12-2d10.q1k chr05 550 676 575180 575306 F 127 81.89 1398 reject_low 333 ALIGNMENT 187 Y12-2d10.q1k chr05 903 535 1470 1838 C 369 84.82 1398 reject_low 115 ALIGNMENT 128 Y12-2d10.q1k chr09 795 535 1830 2090 C 261 83.91 1398 reject_low 182 ALIGNMENT 0 Y12-2d10.q1k chr09 534 62 2091 2090 C 473 0.00 1398 reject_low 182 ALIGNMENT 0 Y12-2d10.q1k chr05 62 755 574918 574917 F 694 0.00 1398 reject_low 210 ALIGNMENT 101 Y12-2d10.q1k chr02 687 529 1774 1932 C 159 88.68 1398 reject_low 225 ALIGNMENT 659 Y12-2d10.q1k chr08 32 935 559921 560837 F 904 91.48 1398 reject_low 27 ALIGNMENT 0 Y12-2d10.q1k chr08 62 530 560613 560612 F 469 0.00 1398 reject_low 247 ALIGNMENT 160 Y12-2d10.q1k chr02 963 531 1785 2218 C 433 80.37 1398 reject_low 131 ALIGNMENT 42 Y12-2d10.q1k chr08 999 897 1806 1909 C 103 82.52 1398 reject_low 329 ALIGNMENT 0 Y12-2d10.q1k chr08 689 62 1901 1900 C 628 0.00 1398 reject_low 170 ALIGNMENT 55 Y12-2d10.q1k chr16 676 550 1494 1620 C 127 81.89 1398 reject_low 340 ALIGNMENT 31 Y12-2d10.q1k chr04 946 1011 1530064 1530129 F 66 83.33 1398 reject_low 359 ALIGNMENT 20 Y12-2d10.q1k chr12 568 546 1694 1716 C 23 95.65 1398 reject_low 397 ALIGNMENT 0 Y12-2d10.q1k chr10 528 62 2260 2259 C 467 0.00 1398 reject_low 84 ALIGNMENT 324 Y12-2d10.q1k chr12 587 1126 1076265 1076804 F 540 87.78 1398 reject_low 47 ALIGNMENT 0 Y12-2d10.q1k chr10 528 62 2224 2223 C 467 0.00 1398 reject_low 100 ALIGNMENT 72 Y12-2d10.q1k chr12 712 550 7337 7499 C 163 82.21 1398|9,0 reject_low 410,413 ALIGNMENT 98 Y12-2d10.q1k chr08 550 831 560560 560841 F 282 79.43 1398 reject_low 244 ALIGNMENT 196 Y12-2d10.q1k chr16 531 867 946158 946494 F 337 87.24 1398 reject_low 110 ALIGNMENT 0 Y12-2d10.q1k chr08 796 880 560841 560840 F 85 0.00 1398 reject_low 188 ALIGNMENT 0 Y12-2d10.q1k chr09 786 62 2379 2378 C 725 0.00 1398 reject_low 342 ALIGNMENT 86 Y12-2d10.q1k chr16 550 795 946249 946494 F 246 79.27 1398 reject_low 259 ALIGNMENT 0 Y12-2d10.q1k chr12 586 62 2216 2215 C 525 0.00 1398 reject_low 94 ALIGNMENT 0 Y12-2d10.q1k chr16 62 586 945962 945961 F 525 0.00 1398 reject_low 90 ALIGNMENT 741 Y12-2d10.q1k chr16 32 1010 945467 946458 F 979 92.44 1398 reject_low 14 ALIGNMENT 109 Y12-2d10.q1k chr15 695 1007 1089229 1089542 F 313 80.19 1398 reject_low 187 ALIGNMENT 115 Y12-2d10.q1k chr12 1007 695 1902 2215 C 313 80.83 1398|0,9 reject_low 410 ALIGNMENT 0 Y12-2d10.q1k chr04 62 586 1530064 1530063 F 525 0.00 1398 reject_low 38 ALIGNMENT 0 Y12-2d10.q1k chr13 530 62 2004 2003 C 469 0.00 1398 reject_low 138 ALIGNMENT 0 Y12-2d10.q1k chr12 694 62 7751 7750 C 633 0.00 1398 reject_low 53 ALIGNMENT 30 Y12-2d10.q1k chr10 1011 823 2172 2361 C 189 74.07 1398 reject_low 391 ALIGNMENT 664 Y12-2d10.p1k chr07 1080 269 1086752 1087550 C 812 95.07 1278 reject_low 4 ALIGNMENT 0 Y12-2d10.q1k chr16 62 530 946014 946013 F 469 0.00 1398 reject_low 32 ALIGNMENT 0 Y12-2d10.q1k chr05 616 880 575317 575316 F 265 0.00 1398 reject_low 379 ALIGNMENT 147 Y12-2d10.q1k chr09 999 567 1949 2382 C 433 79.45 1398 reject_low 142 ALIGNMENT 65 Y12-2d10.q1k chr06 999 711 976 1265 C 289 76.12 1398 reject_low 294 ALIGNMENT 67 Y12-2d10.q1k chr06 652 535 892 1009 C 118 86.44 1398 reject_low 311 ALIGNMENT 0 Y12-2d10.q1k chr15 677 880 1089642 1089641 F 204 0.00 1398 reject_low 339 ALIGNMENT 266 Y12-2d10.q1k chr05 974 531 1470 1914 C 444 88.06 1398 reject_low 60 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 1749 1748 C 488 0.00 1398 reject_low 375 ALIGNMENT 43 Y12-2d10.q1k chr12 935 999 1076290 1076354 F 65 90.77 1398 reject_low 417 ALIGNMENT 79 Y12-2d10.q1k chr16 531 712 946302 946483 F 182 81.87 1398 reject_low 262 ALIGNMENT 0 Y12-2d10.q1k chr16 796 880 946494 946493 F 85 0.00 1398 reject_low 259 ALIGNMENT 51 Y12-2d10.q1k chr15 897 1010 1089251 1089365 F 114 84.21 1398 reject_low 300 ALIGNMENT 0 Y12-2d10.q1k chr02 880 834 1773 1772 C 47 0.00 1398 reject_low 173 ALIGNMENT 0 Y12-2d10.q1k chr05 786 62 2055 2054 C 725 0.00 1398 reject_low 260 ALIGNMENT 68 Y12-2d10.q1k chr10 676 531 1788 1933 C 146 82.88 1398 reject_low 301 ALIGNMENT 0 Y12-2d10.q1k chr07 62 586 1088970 1088969 F 525 0.00 1398 reject_low 71 ALIGNMENT 0 Y12-2d10.q1k chr10 534 62 2110 2109 C 473 0.00 1398 reject_low 76 ALIGNMENT 45 Y12-2d10.q1k chr06 999 787 1048 1261 C 213 76.06 1398 reject_low 341 ALIGNMENT 188 Y12-2d10.p1k chr12 269 469 9170 9370 F 201 98.01 1278 reject_low 44 ALIGNMENT 0 Y12-2d10.q1k chr16 62 530 946158 946157 F 469 0.00 1398 reject_low 110 ALIGNMENT 0 Y12-2d10.q1k chr15 787 880 1089644 1089643 F 94 0.00 1398 reject_low 184 ALIGNMENT 0 Y12-2d10.q1k chr04 62 530 1530224 1530223 F 469 0.00 1398 reject_low 162 ALIGNMENT 117 Y12-2d10.q1k chr05 1010 675 1722 2058 C 336 80.06 1398 reject_low 161 ALIGNMENT 0 Y12-2d10.q1k chr04 641 880 1530477 1530476 F 240 0.00 1398 reject_low 349 ALIGNMENT 0 Y12-2d10.q1k chr08 880 616 1652 1651 C 265 0.00 1398 reject_low 344 ALIGNMENT 70 Y12-2d10.q1k chr12 676 550 1694 1820 C 127 85.83 1398 reject_low 312 ALIGNMENT 0 Y12-2d10.q1k chr05 674 62 2059 2058 C 613 0.00 1398 reject_low 161 ALIGNMENT 63 Y12-2d10.q1k chr09 1010 766 2118 2363 C 245 77.55 1398 reject_low 281 ALIGNMENT 90 Y12-2d10.q1k chr07 531 754 1089166 1089389 F 224 80.80 1398 reject_low 252 ALIGNMENT 185 Y12-2d10.p1k chr02 269 469 3836 4036 F 201 97.51 1278 reject_low 45 ALIGNMENT 166 Y12-2d10.q1k chr13 1010 659 1739 2091 C 352 84.09 1398 reject_low 119 ALIGNMENT 203 Y12-2d10.q1k chr12 935 535 1687 2087 C 401 84.79 1398 reject_low 107 ALIGNMENT 54 Y12-2d10.q1k chr05 897 1010 574915 575029 F 114 85.09 1398 reject_low 283 ALIGNMENT 415 Y12-2d10.q1k chr08 587 1311 560417 561153 F 725 87.03 1398 reject_low 34 ALIGNMENT 97 Y12-2d10.q1k chr16 1007 756 1630 1882 C 252 81.75 1398 reject_low 215 ALIGNMENT 51 Y12-2d10.q1k chr12 897 1010 1076287 1076401 F 114 84.21 1398|3,0 reject_low 399,405 ALIGNMENT 0 Y12-2d10.q1k chr02 755 62 2390 2389 C 694 0.00 1398 reject_low 176 ALIGNMENT 31 Y12-2d10.q1k chr07 946 1011 1088970 1089035 F 66 83.33 1398 reject_low 361 ALIGNMENT 0 Y12-2d10.q1k chr13 880 641 1679 1678 C 240 0.00 1398 reject_low 355 ALIGNMENT 98 Y12-2d10.q1k chr15 767 1010 1089229 1089473 F 244 82.38 1398 reject_low 206 ALIGNMENT 0 Y12-2d10.q1k chr06 880 748 906 905 C 133 0.00 1398 reject_low 150 ALIGNMENT 163 Y12-2d10.q1k chr04 659 1010 1530064 1530416 F 352 83.81 1398 reject_low 122 ALIGNMENT 83 Y12-2d10.q1k chr12 795 550 1683 1928 C 246 78.86 1398 reject_low 263 ALIGNMENT 214 Y12-2d10.q1k chr12 1010 587 1791 2215 C 424 85.14 1398 reject_low 94 ALIGNMENT 0 Y12-2d10.q1k chr12 765 880 1076694 1076693 F 116 0.00 1398 reject_low 248 ALIGNMENT 0 Y12-2d10.q1k chr02 934 62 2390 2389 C 873 0.00 1398 reject_low 347 ALIGNMENT 89 Y12-2d10.q1k chr16 999 803 1710 1907 C 197 83.76 1398 reject_low 232 ALIGNMENT 0 Y12-2d10.q1k chr05 528 62 1953 1952 C 467 0.00 1398 reject_low 33 ALIGNMENT 0 Y12-2d10.q1k chr10 549 62 1843 1842 C 488 0.00 1398 reject_low 371 ALIGNMENT 0 Y12-2d10.q1k chr12 62 586 1076265 1076264 F 525 0.00 1398 reject_low 47 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 2128 2127 C 469 0.00 1398 reject_low 96 ALIGNMENT 96 Y12-2d10.q1k chr05 1010 711 1758 2058 C 300 79.33 1398 reject_low 224 ALIGNMENT 234 Y12-2d10.q1k chr07 623 1010 1088970 1089358 F 388 88.40 1398 reject_low 67 ALIGNMENT 0 Y12-2d10.q1k chr12 62 658 1069602 1069601 F 597 0.00 1398 reject_low 123 ALIGNMENT 0 Y12-2d10.q1k chr07 830 880 1089392 1089391 F 51 0.00 1398 reject_low 203 ALIGNMENT 0 Y12-2d10.q1k chr07 677 880 1089383 1089382 F 204 0.00 1398 reject_low 334 ALIGNMENT 0 Y12-2d10.q1k chr16 896 62 1886 1885 C 835 0.00 1398 reject_low 288 ALIGNMENT 199 Y12-2d10.q1k chr02 999 550 1821 2271 C 450 82.89 1398 reject_low 102 ALIGNMENT 228 Y12-2d10.q1k chr09 1010 531 1866 2346 C 480 83.96 1398 reject_low 77 ALIGNMENT 146 Y12-2d10.q1k chr12 831 550 1683 1964 C 282 85.11 1398 reject_low 153 ALIGNMENT 0 Y12-2d10.q1k chr05 832 880 575317 575316 F 49 0.00 1398 reject_low 197 ALIGNMENT 0 Y12-2d10.q1k chr12 880 796 1684 1683 C 85 0.00 1398 reject_low 263 ALIGNMENT 122 Y12-2d10.q1k chr05 535 831 575021 575317 F 297 81.48 1398 reject_low 197 ALIGNMENT 0 Y12-2d10.q1k chr06 528 62 1196 1195 C 467 0.00 1398 reject_low 208 ALIGNMENT 0 Y12-2d10.q1k chr12 62 545 1076620 1076619 F 484 0.00 1398 reject_low 381 ALIGNMENT 46 Y12-2d10.q1k chr05 999 823 1877 2054 C 177 77.40 1398 reject_low 328 ALIGNMENT 664 Y12-2d10.p1k chr14 269 1080 3418 4216 F 812 95.07 1278 reject_low 6 ALIGNMENT 0 Y12-2d10.q1k chr05 62 586 574893 574892 F 525 0.00 1398 reject_low 36 ALIGNMENT 0 Y12-2d10.q1k chr16 62 534 946378 946377 F 473 0.00 1398 reject_low 346 ALIGNMENT 72 Y12-2d10.q1k chr07 550 712 1089221 1089383 F 163 82.21 1398 reject_low 304 ALIGNMENT 0 Y12-2d10.q1k chr05 545 62 1756 1755 C 484 0.00 1398 reject_low 168 ALIGNMENT 191 Y12-2d10.p1k chr16 469 269 944342 944542 C 201 98.51 1278 reject_low 41 ALIGNMENT 101 Y12-2d10.q1k chr13 1010 767 1847 2091 C 244 82.79 1398 reject_low 192 ALIGNMENT 97 Y12-2d10.q1k chr14 1007 756 1721 1973 C 252 81.75 1398 reject_low 214 ALIGNMENT 744 Y12-2d10.q1k chr05 1010 34 1578 2555 C 977 92.53 1398 reject_low 13 ALIGNMENT 0 Y12-2d10.q1k chr14 766 62 1999 1998 C 705 0.00 1398 reject_low 193 ALIGNMENT 207 Y12-2d10.q1k chr10 907 531 1773 2149 C 377 86.21 1398 reject_low 106 ALIGNMENT 0 Y12-2d10.q1k chr04 62 945 1530064 1530063 F 884 0.00 1398 reject_low 359 ALIGNMENT 31 Y12-2d10.q1k chr12 1011 946 7685 7750 C 66 83.33 1398 reject_low 363 ALIGNMENT 166 Y12-2d10.q1k chr12 1010 659 7398 7750 C 352 84.09 1398 reject_low 50 ALIGNMENT 0 Y12-2d10.p1k chr16 934 470 944346 944341 C 465 0.00 1278 reject_low 41 ALIGNMENT 245 Y12-2d10.q1k chr13 903 531 1667 2039 C 373 89.81 1398 reject_low 81 ALIGNMENT 0 Y12-2d10.q1k chr12 896 641 2194 7336 C 256 0.00 1398 reject_low 415 ALIGNMENT 114 Y12-2d10.q1k chr09 1010 675 2046 2382 C 336 79.76 1398 reject_low 171 ALIGNMENT 0 Y12-2d10.q1k chr16 62 549 946213 946212 F 488 0.00 1398 reject_low 152 ALIGNMENT 51 Y12-2d10.q1k chr12 897 1010 1069624 1069738 F 114 84.21 1398 reject_low 299 ALIGNMENT 0 Y12-2d10.q1k chr05 62 549 575144 575143 F 488 0.00 1398 reject_low 303 ALIGNMENT 0 Y12-2d10.p1k chr13 470 800 3711 3710 F 331 0.00 1278 reject_low 29 ALIGNMENT 31 Y12-2d10.q1k chr15 946 1011 1089229 1089294 F 66 83.33 1398 reject_low 368 ALIGNMENT 0 Y12-2d10.q1k chr02 534 62 2179 2178 C 473 0.00 1398 reject_low 114 ALIGNMENT 0 Y12-2d10.q1k chr12 802 62 7751 7750 C 741 0.00 1398 reject_low 229 ALIGNMENT 0 Y12-2d10.q1k chr08 526 62 1848 1847 C 465 0.00 1398 reject_low 202 ALIGNMENT 664 Y12-2d10.p1k chr12 1080 269 1067384 1068182 C 812 95.07 1278 reject_low 5 ALIGNMENT 0 Y12-2d10.q1k chr12 62 586 1069602 1069601 F 525 0.00 1398 reject_low 75 ALIGNMENT 40 Y12-2d10.q1k chr12 546 613 1069957 1070024 F 68 86.76 1398 reject_low 417 ALIGNMENT 0 Y12-2d10.q1k chr06 765 62 1247 1246 C 704 0.00 1398 reject_low 280 ALIGNMENT 681 Y12-2d10.q1k chr12 32 935 1075770 1076685 F 904 92.26 1398 reject_low 24 ALIGNMENT 687 Y12-2d10.q1k chr07 32 935 1088475 1089390 F 904 92.48 1398 reject_low 19 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1076353 1076352 F 469 0.00 1398 reject_low 145 ALIGNMENT 60 Y12-2d10.q1k chr12 1011 839 2042 2215 C 173 80.35 1398 reject_low 414 ALIGNMENT 131 Y12-2d10.q1k chr07 531 793 1089130 1089392 F 263 84.03 1398 reject_low 169 ALIGNMENT 160 Y12-2d10.q1k chr05 531 867 574981 575317 F 337 83.68 1398 reject_low 137 ALIGNMENT 0 Y12-2d10.q1k chr12 549 62 1821 1820 C 488 0.00 1398 reject_low 312 ALIGNMENT 0 Y12-2d10.q1k chr06 566 62 1266 1265 C 505 0.00 1398 reject_low 277 ALIGNMENT 234 Y12-2d10.q1k chr05 623 1010 574893 575281 F 388 88.40 1398 reject_low 66 ALIGNMENT 0 Y12-2d10.q1k chr16 62 694 945962 945961 F 633 0.00 1398 reject_low 158 ALIGNMENT 0 Y12-2d10.q1k chr12 713 880 1076678 1076677 F 168 0.00 1398 reject_low 306 ALIGNMENT 0 Y12-2d10.q1k chr06 880 725 893 892 C 156 0.00 1398 reject_low 132 ALIGNMENT 56 Y12-2d10.q1k chr06 615 531 893 977 C 85 89.41 1398 reject_low 315 ALIGNMENT 676 Y12-2d10.q1k chr15 32 930 1088734 1089644 F 899 92.21 1398 reject_low 25 ALIGNMENT 0 Y12-2d10.q1k chr15 859 880 1089644 1089643 F 22 0.00 1398 reject_low 149 ALIGNMENT 661 Y12-2d10.p1k chr15 1080 269 1087011 1087809 C 812 94.95 1278 reject_low 9 ALIGNMENT 0 Y12-2d10.q1k chr16 880 832 1484 1483 C 49 0.00 1398 reject_low 201 ALIGNMENT 43 Y12-2d10.q1k chr16 550 615 946429 946494 F 66 89.39 1398 reject_low 376 ALIGNMENT 72 Y12-2d10.q1k chr08 1010 802 1723 1932 C 209 80.38 1398 reject_low 253 ALIGNMENT 106 Y12-2d10.q1k chr08 764 531 1646 1879 C 234 82.48 1398 reject_low 234 ALIGNMENT 245 Y12-2d10.q1k chr05 531 903 574945 575317 F 373 89.81 1398 reject_low 80 ALIGNMENT 216 Y12-2d10.q1k chr02 1010 623 2026 2414 C 388 86.86 1398 reject_low 89 ALIGNMENT 112 Y12-2d10.q1k chr14 1007 695 1685 1998 C 313 80.51 1398 reject_low 180 ALIGNMENT 0 Y12-2d10.q1k chr09 530 62 2167 2166 C 469 0.00 1398 reject_low 128 ALIGNMENT 0 Y12-2d10.q1k chr07 641 880 1089383 1089382 F 240 0.00 1398 reject_low 351 ALIGNMENT 0 Y12-2d10.q1k chr07 62 694 1088970 1088969 F 633 0.00 1398 reject_low 178 ALIGNMENT 101 Y12-2d10.q1k chr07 767 1010 1088970 1089214 F 244 82.79 1398 reject_low 190 ALIGNMENT 0 Y12-2d10.q1k chr06 534 62 1010 1009 C 473 0.00 1398 reject_low 311 ALIGNMENT 0 Y12-2d10.q1k chr12 945 62 7751 7750 C 884 0.00 1398 reject_low 363 ALIGNMENT 118 Y12-2d10.q1k chr16 695 1010 945962 946278 F 316 81.01 1398 reject_low 158 ALIGNMENT 51 Y12-2d10.q1k chr04 897 1010 1530086 1530200 F 114 84.21 1398 reject_low 297 ALIGNMENT 129 Y12-2d10.q1k chr02 833 531 1772 2074 C 303 81.85 1398 reject_low 173 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1069798 1069797 F 469 0.00 1398 reject_low 408,409 ALIGNMENT 0 Y12-2d10.q1k chr12 530 62 1876 1875 C 469 0.00 1398 reject_low 261 ALIGNMENT 113 Y12-2d10.q1k chr02 1010 767 2170 2414 C 244 84.43 1398 reject_low 155 ALIGNMENT 163 Y12-2d10.q1k chr05 867 531 1470 1806 C 337 83.98 1398 reject_low 134 ALIGNMENT 0 Y12-2d10.q1k chr12 880 569 1695 1694 C 312 0.00 1398 reject_low 397 ALIGNMENT 0 Y12-2d10.q1k chr09 528 62 2313 2312 C 467 0.00 1398 reject_low 63 ALIGNMENT 122 Y12-2d10.q1k chr12 535 831 1076393 1076689 F 297 81.48 1398 reject_low 198 ALIGNMENT 43 Y12-2d10.q1k chr13 999 935 2002 2066 C 65 90.77 1398 reject_low 322 ALIGNMENT 31 Y12-2d10.q1k chr13 1011 946 2026 2091 C 66 83.33 1398 reject_low 366 ALIGNMENT 132 Y12-2d10.q1k chr04 531 795 1530224 1530488 F 265 84.15 1398 reject_low 162 ALIGNMENT 0 Y12-2d10.q1k chr04 62 934 1530089 1530088 F 873 0.00 1398 reject_low 317 ALIGNMENT 133 Y12-2d10.q1k chr02 905 531 1772 2146 C 375 79.73 1398 reject_low 157 ALIGNMENT 0 Y12-2d10.q1k chr12 755 766 1070022 1076264 F 12 0.00 1398 reject_low 408 ALIGNMENT 0 Y12-2d10.q1k chr02 896 62 2393 2392 C 835 0.00 1398 reject_low 296 ALIGNMENT 0 Y12-2d10.q1k chr07 794 880 1089392 1089391 F 87 0.00 1398 reject_low 169 ALIGNMENT 49 Y12-2d10.q1k chr12 550 640 1069925 1070015 F 91 85.71 1398|0,9 reject_low 400 ALIGNMENT 31 Y12-2d10.q1k chr16 1011 946 1842 1907 C 66 83.33 1398 reject_low 369 ALIGNMENT 0 Y12-2d10.q1k chr08 713 880 560830 560829 F 168 0.00 1398 reject_low 305 ALIGNMENT 0 Y12-2d10.q1k chr08 534 62 1732 1731 C 473 0.00 1398 reject_low 344 ALIGNMENT 0 Y12-2d10.q1k chr12 900 899 1070023 1076289 F 0 0.00 1398 reject_low 399 ALIGNMENT 167 Y12-2d10.q1k chr10 799 550 1773 2022 C 250 90.00 1398 reject_low 136 ALIGNMENT 0 Y12-2d10.q1k chr09 765 62 2364 2363 C 704 0.00 1398 reject_low 281 ALIGNMENT 152 Y12-2d10.q1k chr02 869 535 1772 2106 C 335 82.99 1398 reject_low 148 ALIGNMENT 233 Y12-2d10.q1k chr16 531 903 946122 946494 F 373 88.74 1398 reject_low 92 ALIGNMENT 0 Y12-2d10.q1k chr16 62 545 946461 946460 F 484 0.00 1398 reject_low 398 ALIGNMENT 47 Y12-2d10.q1k chr10 622 550 1770 1842 C 73 89.04 1398 reject_low 371 ALIGNMENT 94 Y12-2d10.q1k chr04 531 764 1530260 1530493 F 234 80.77 1398 reject_low 245 ALIGNMENT 0 Y12-2d10.q1k chr07 62 530 1089166 1089165 F 469 0.00 1398 reject_low 252 ALIGNMENT 0 Y12-2d10.q1k chr14 549 62 1676 1675 C 488 0.00 1398 reject_low 356 ALIGNMENT 0 Y12-2d10.q1k chr16 549 62 1657 1656 C 488 0.00 1398 reject_low 310 ALIGNMENT 0 Y12-2d10.q1k chr16 765 880 946499 946498 F 116 0.00 1398 reject_low 207 ALIGNMENT 122 Y12-2d10.q1k chr13 831 535 1667 1963 C 297 81.48 1398 reject_low 199 ALIGNMENT 0 Y12-2d10.q1k chr10 880 800 1774 1773 C 81 0.00 1398 reject_low 136 ALIGNMENT 0 Y12-2d10.q1k chr08 896 62 1910 1909 C 835 0.00 1398 reject_low 329 ALIGNMENT 141 Y12-2d10.q1k chr05 1010 607 1650 2054 C 404 79.95 1398 reject_low 146 ALIGNMENT 0 Y12-2d10.q1k chr15 713 880 1089642 1089641 F 168 0.00 1398 reject_low 309 ALIGNMENT 142 Y12-2d10.q1k chr06 747 529 905 1123 C 219 89.04 1398 reject_low 150 ALIGNMENT 0 Y12-2d10.q1k chr16 880 713 1495 1494 C 168 0.00 1398 reject_low 310 ALIGNMENT 202 Y12-2d10.q1k chr05 1010 567 1614 2058 C 444 83.33 1398 reject_low 99 ALIGNMENT 0 Y12-2d10.q1k chr16 62 549 946357 946356 F 488 0.00 1398 reject_low 313 ALIGNMENT 0 Y12-2d10.p1k chr12 470 934 9371 9366 F 465 0.00 1278 reject_low 44 ALIGNMENT 122 Y12-2d10.q1k chr04 535 831 1530192 1530488 F 297 81.48 1398 reject_low 196 ALIGNMENT 149 Y12-2d10.q1k chr15 531 858 1089317 1089644 F 328 82.93 1398 reject_low 149 ALIGNMENT 231 Y12-2d10.q1k chr12 623 1010 1076265 1076653 F 388 88.14 1398|9,0 reject_low 400 ALIGNMENT 0 Y12-2d10.q1k chr02 880 618 1773 1772 C 263 0.00 1398 reject_low 264 ALIGNMENT 0 Y12-2d10.q1k chr04 62 896 1530086 1530085 F 835 0.00 1398 reject_low 297 ALIGNMENT 0 Y12-2d10.q1k chr12 934 62 7726 7725 C 873 0.00 1398 reject_low 320 ALIGNMENT 0 Y12-2d10.q1k chr05 62 802 574893 574892 F 741 0.00 1398 reject_low 227 ALIGNMENT 157 Y12-2d10.q1k chr04 531 867 1530152 1530488 F 337 83.38 1398 reject_low 144 ALIGNMENT 90 Y12-2d10.q1k chr12 531 754 1069798 1070021 F 224 80.80 1398 reject_low 408,409 ALIGNMENT 43 Y12-2d10.q1k chr04 935 999 1530089 1530153 F 65 90.77 1398 reject_low 317 ALIGNMENT 0 Y12-2d10.q1k chr05 549 62 1608 1607 C 488 0.00 1398 reject_low 295 ALIGNMENT 0 Y12-2d10.q1k chr06 822 62 1262 1261 C 761 0.00 1398 reject_low 389 ALIGNMENT 0 Y12-2d10.q1k chr13 586 62 2092 2091 C 525 0.00 1398 reject_low 35 ALIGNMENT 171 Y12-2d10.q1k chr02 999 659 2073 2414 C 341 85.04 1398 reject_low 116 ALIGNMENT 0 Y12-2d10.q1k chr06 880 832 894 893 C 49 0.00 1398 reject_low 208 ALIGNMENT 121 Y12-2d10.q1k chr12 535 829 1069730 1070024 F 295 81.36 1398 reject_low 411 ALIGNMENT 97 Y12-2d10.q1k chr12 1007 756 7473 7725 C 252 81.75 1398 reject_low 212 ALIGNMENT 206 Y12-2d10.q1k chr16 535 935 946090 946490 F 401 85.04 1398 reject_low 105 ALIGNMENT 0 Y12-2d10.q1k chr05 710 62 2059 2058 C 649 0.00 1398 reject_low 224 ALIGNMENT 0 Y12-2d10.q1k chr10 674 62 2366 2365 C 613 0.00 1398 reject_low 172 ALIGNMENT 0 Y12-2d10.q1k chr02 534 62 2107 2106 C 473 0.00 1398 reject_low 148 ALIGNMENT 94 Y12-2d10.q1k chr16 764 531 1478 1711 C 234 80.77 1398 reject_low 251 ALIGNMENT 0 Y12-2d10.q1k chr05 62 530 575089 575088 F 469 0.00 1398 reject_low 246 ALIGNMENT 0 Y12-2d10.q1k chr16 530 62 1856 1855 C 469 0.00 1398 reject_low 83 ALIGNMENT 54 Y12-2d10.q1k chr07 897 1010 1088992 1089106 F 114 85.09 1398 reject_low 284 ALIGNMENT 681 Y12-2d10.q1k chr12 32 935 1069107 1070022 F 904 92.26 1398 accept_tel 0 ALIGNMENT 0 Y12-2d10.q1k chr08 880 765 1647 1646 C 116 0.00 1398 reject_low 234 ALIGNMENT 0 Y12-2d10.q1k chr04 62 694 1530064 1530063 F 633 0.00 1398 reject_low 185 ALIGNMENT 76 Y12-2d10.q1k chr06 926 567 906 1265 C 360 75.00 1398 reject_low 277 ALIGNMENT 30 Y12-2d10.p1k chr08 990 935 558745 558798 C 56 87.50 1278 reject_low 46 ALIGNMENT 0 Y12-2d10.q1k chr16 549 62 1585 1584 C 488 0.00 1398 reject_low 358 ALIGNMENT 132 Y12-2d10.q1k chr12 795 531 7326 7590 C 265 84.15 1398 reject_low 52 ALIGNMENT 0 Y12-2d10.p1k chr12 287 934 3832 3831 F 648 0.00 1278 reject_low 48,49,50,51,52,53,54 ALIGNMENT 0 Y12-2d10.q1k chr12 945 62 2216 2215 C 884 0.00 1398 reject_low 362 ALIGNMENT 603 Y12-2d10.p1k chr05 269 1080 3482 4299 F 812 92.61 1278 reject_low 10 ALIGNMENT 109 Y12-2d10.q1k chr04 695 1007 1530064 1530377 F 313 80.19 1398 reject_low 185 ALIGNMENT 218 Y12-2d10.q1k chr12 974 531 1683 2127 C 444 84.46 1398 reject_low 96 ALIGNMENT 0 Y12-2d10.q1k chr05 62 945 574893 574892 F 884 0.00 1398 reject_low 360 ALIGNMENT 0 Y12-2d10.q1k chr07 866 880 1089392 1089391 F 15 0.00 1398 reject_low 141 ALIGNMENT 0 Y12-2d10.q1k chr16 62 838 945962 945961 F 777 0.00 1398 reject_low 272 ALIGNMENT 0 Y12-2d10.q1k chr12 62 530 1069690 1069689 F 469 0.00 1398 reject_low 405 ALIGNMENT 0 Y12-2d10.q1k chr16 62 766 945962 945961 F 705 0.00 1398 reject_low 195 ALIGNMENT 0 Y12-2d10.q1k chr05 549 62 1644 1643 C 488 0.00 1398 reject_low 316 ALIGNMENT 0 Y12-2d10.q1k chr16 62 755 945987 945986 F 694 0.00 1398 reject_low 216 ALIGNMENT 0 Y12-2d10.q1k chr07 755 880 1089389 1089388 F 126 0.00 1398 reject_low 252 ALIGNMENT 0 Y12-2d10.q1k chr15 62 694 1089229 1089228 F 633 0.00 1398 reject_low 187 ALIGNMENT 0 Y12-2d10.q1k chr16 658 62 1908 1907 C 597 0.00 1398 reject_low 121 ALIGNMENT 0 Y12-2d10.q1k chr07 62 549 1089221 1089220 F 488 0.00 1398 reject_low 304 ALIGNMENT 0 Y12-2d10.q1k chr14 896 62 1977 1976 C 835 0.00 1398 reject_low 287 ALIGNMENT 0 Y12-2d10.q1k chr12 62 534 1076393 1076392 F 473 0.00 1398 reject_low 198 ALIGNMENT 40 Y12-2d10.q1k chr07 546 613 1089325 1089392 F 68 86.76 1398 reject_low 385 ALIGNMENT 0 Y12-2d10.q1k chr16 755 62 1883 1882 C 694 0.00 1398 reject_low 215 ALIGNMENT 0 Y12-2d10.q1k chr12 62 622 1069602 1069601 F 561 0.00 1398 reject_low 73 ALIGNMENT 109 Y12-2d10.q1k chr12 695 1007 1076265 1076578 F 313 80.19 1398|9,0 reject_low 412 ALIGNMENT 0 Y12-2d10.q1k chr02 528 62 1933 1932 C 467 0.00 1398 reject_low 225 ALIGNMENT 0 Y12-2d10.q1k chr09 638 62 2383 2382 C 577 0.00 1398 reject_low 159 ALIGNMENT 241 Y12-2d10.q1k chr12 531 901 1069654 1070024 F 371 89.49 1398|0,2 reject_low 399 ALIGNMENT 0 Y12-2d10.q1k chr02 880 724 1775 1774 C 157 0.00 1398 reject_low 209 ALIGNMENT 385 Y12-2d10.q1k chr04 587 1311 1530064 1530800 F 725 85.66 1398 reject_low 38 ALIGNMENT 0 Y12-2d10.q1k chr02 530 62 1895 1894 C 469 0.00 1398 reject_low 275 ALIGNMENT 98 Y12-2d10.q1k chr12 767 1010 1076265 1076509 F 244 82.38 1398 reject_low 408 ALIGNMENT 0 Y12-2d10.q1k chr05 62 838 574893 574892 F 777 0.00 1398 reject_low 266 ALIGNMENT 118 Y12-2d10.q1k chr02 797 550 1772 2019 C 248 83.47 1398 reject_low 217 ALIGNMENT 0 Y12-2d10.q1k chr12 658 62 7751 7750 C 597 0.00 1398 reject_low 50 ALIGNMENT 0 Y12-2d10.q1k chr02 694 62 2415 2414 C 633 0.00 1398 reject_low 151 ALIGNMENT 43 Y12-2d10.q1k chr05 615 550 1470 1535 C 66 89.39 1398 reject_low 374 ALIGNMENT 0 Y12-2d10.q1k chr10 880 641 1789 1788 C 240 0.00 1398 reject_low 331 ALIGNMENT 0 Y12-2d10.q1k chr12 62 549 1069889 1069888 F 488 0.00 1398 reject_low 403 ALIGNMENT 174 Y12-2d10.q1k chr12 999 659 1874 2215 C 341 85.34 1398|0,9 reject_low 402 ALIGNMENT 215 Y12-2d10.q1k chr09 831 535 1830 2126 C 297 91.92 1398 reject_low 104 ALIGNMENT 942 Y12-2d11.p1k chr12 1170 20 467615 468769 C 1151 95.57 1199 accept 1 ALIGNMENT 0 Y12-2d11.p1k chr06 62 235 31622 31621 F 174 0.00 1199 reject_low 2 ALIGNMENT 94 Y12-2d11.p1k chr06 236 343 31622 31729 F 108 98.15 1199 reject_low 2 ALIGNMENT 942 Y12-2d11.p1k chr12 1170 20 458478 459632 C 1151 95.57 1199 accept 0 ALIGNMENT 1028 Y12-2d11.q1k chr12 36 1226 464625 465818 F 1191 95.80 1241 accept 1 ALIGNMENT 1028 Y12-2d11.q1k chr12 36 1226 455488 456681 F 1191 95.80 1241 accept 0 ALIGNMENT 0 Y12-2d11.p1k chr06 344 833 31729 31728 F 490 0.00 1199 reject_low 2 ALIGNMENT 817 Y12-2d13.q1k chr10 1057 27 529265 530287 C 1031 94.76 1295 accept 0 ALIGNMENT 916 Y12-2d14.p1k chr15 18 1103 84507 85604 F 1086 95.95 1182 accept 0 ALIGNMENT 994 Y12-2d14.q1k chr15 1184 38 89562 90716 C 1147 96.43 1253 accept 0 ALIGNMENT 1075 Y12-2d15.q1k chr16 1314 27 505722 507000 C 1288 95.42 1355 accept 0 ALIGNMENT 1028 Y12-2d15.p1k chr16 19 1232 502847 504068 F 1214 95.55 1237 accept 0 ALIGNMENT 1049 Y12-2d17.q1k chr10 31 1266 32924 34157 F 1236 96.36 1269 accept 0 ALIGNMENT 749 Y12-2d17.p1k chr10 1152 260 37253 38151 C 893 95.63 1201 accept 0 ALIGNMENT 33 Y12-2d18.p1k chr13 639 460 476026 476205 C 180 73.33 1175 reject_low 1 ALIGNMENT 0 Y12-2d18.p1k chr13 459 364 476206 476301 C 96 0.00 1175 reject_low 1 ALIGNMENT 898 Y12-2d18.p1k chr11 19 1086 204149 205235 F 1068 96.16 1175 accept 0 ALIGNMENT 0 Y12-2d18.p1k chr13 855 640 476027 476026 C 216 0.00 1175 reject_low 1 ALIGNMENT 1026 Y12-2d18.q1k chr11 1220 36 207854 209045 C 1185 96.37 1246 accept 0 ALIGNMENT 71 Y12-2d18.p1k chr13 363 150 476302 476515 C 214 78.04 1175 reject_low 1 ALIGNMENT 710 Y12-2d20.p1k chr04 301 1207 924079 924994 F 907 94.16 1212 accept_chi 1 ALIGNMENT 1033 Y12-2d20.q1k chr07 1219 34 913585 914763 C 1186 96.29 1255 accept_chi 0 ALIGNMENT 976 Y12-2d22.q1k chr16 35 1200 873033 874193 F 1166 96.23 1202 accept 0 ALIGNMENT 841 Y12-2d22.p1k chr16 1147 79 877492 878555 C 1069 94.11 1147 accept 0 ALIGNMENT 0 Y12-2d23.p1k chr01 272 327 108098 108097 F 56 0.00 1176 reject_low 1 ALIGNMENT 947 Y12-2d23.q1k chr15 35 1150 910813 911913 F 1116 96.68 1163 accept 0 ALIGNMENT 0 Y12-2d23.p1k chr01 557 764 108326 108325 F 208 0.00 1176 reject_low 1 ALIGNMENT 613 Y12-2d23.p1k chr15 985 253 915813 916533 C 733 96.18 1176 accept 0 ALIGNMENT 95 Y12-2d23.p1k chr01 328 556 108098 108326 F 229 81.22 1176 reject_low 1 ALIGNMENT 953 Y12-2e02.q1k chr12 1100 42 463845 464916 C 1059 97.54 1297 accept 1 ALIGNMENT 953 Y12-2e02.q1k chr12 1100 42 454708 455779 C 1059 97.54 1297 accept 0 ALIGNMENT 23 Y12-2e04.p1k chr10 189 120 639539 639607 C 70 78.57 1207 reject_bad_break 0 ALIGNMENT 973 Y12-2e04.q1k chr10 31 1158 633747 634878 F 1128 96.72 1347 reject_bad_break 0 ALIGNMENT 0 Y12-2e04.p1k chr10 399 190 639331 639538 C 210 0.00 1207 reject_bad_break 0 ALIGNMENT 60 Y12-2e04.p1k chr10 241 339 639637 639735 F 99 87.88 1207 reject_low 1 ALIGNMENT 0 Y12-2e04.p1k chr10 340 536 639735 639734 F 197 0.00 1207 reject_low 1 ALIGNMENT 261 Y12-2e04.p1k chr10 937 400 638791 639330 C 538 83.46 1207 reject_bad_break 0 ALIGNMENT 1014 Y12-2e05.p1k chr13 25 1207 80411 81591 F 1183 96.28 1240 accept 0 ALIGNMENT 1022 Y12-2e05.q1k chr13 1238 35 83313 84519 C 1204 96.01 1435 accept 0 ALIGNMENT 282 Y12-2e06.p1k chr11 50 384 457779 458114 F 335 96.72 1225 reject_low 2 ALIGNMENT 0 Y12-2e06.p1k chr11 385 824 458114 458113 F 440 0.00 1225 reject_low 2 ALIGNMENT 276 Y12-2e06.p1k chr07 384 53 401962 402294 C 332 96.39 1225 reject_low 9 ALIGNMENT 0 Y12-2e06.p1k chr07 824 385 401963 401962 C 440 0.00 1225 reject_low 9 ALIGNMENT 0 Y12-2e06.p1k chr07 824 385 931692 931691 C 440 0.00 1225 reject_low 8 ALIGNMENT 282 Y12-2e06.p1k chr15 386 74 600401 600714 C 313 98.72 1225 reject_low 11 ALIGNMENT 959 Y12-2e06.q1k chr04 1109 34 886798 887883 C 1076 97.68 1319 accept_trans 0 ALIGNMENT 0 Y12-2e06.p1k chr08 387 824 543943 543942 F 438 0.00 1225 reject_low 12 ALIGNMENT 0 Y12-2e06.p1k chr10 824 385 472378 472377 C 440 0.00 1225 reject_low 19 ALIGNMENT 287 Y12-2e06.p1k chr13 53 386 357003 357337 F 334 97.31 1225 reject_low 4 ALIGNMENT 0 Y12-2e06.p1k chr15 824 385 594822 594821 C 440 0.00 1225 reject_low 14 ALIGNMENT 0 Y12-2e06.p1k chr07 76 62 817388 817387 C 15 0.00 1225 reject_low 22 ALIGNMENT 277 Y12-2e06.p1k chr02 384 74 259576 259887 C 311 98.39 1225 reject_low 15 ALIGNMENT 290 Y12-2e06.p1k chr14 53 386 96609 96943 F 334 97.60 1225 reject_low 3 ALIGNMENT 0 Y12-2e06.p1k chr02 824 385 259577 259576 C 440 0.00 1225 reject_low 15 ALIGNMENT 0 Y12-2e06.p1k chr07 387 824 817731 817730 F 438 0.00 1225 reject_low 10 ALIGNMENT 0 Y12-2e06.p1k chr13 393 824 362926 362925 F 432 0.00 1225 reject_low 1 ALIGNMENT 282 Y12-2e06.p1k chr07 384 53 535215 535547 C 332 96.99 1225 reject_low 7 ALIGNMENT 282 Y12-2e06.p1k chr07 74 386 817418 817731 F 313 98.72 1225 reject_low 10 ALIGNMENT 0 Y12-2e06.p1k chr14 387 824 96943 96942 F 438 0.00 1225 reject_low 3 ALIGNMENT 86 Y12-2e06.p1k chr04 74 228 878318 878469 F 155 88.39 1225 reject_low 23 ALIGNMENT 280 Y12-2e06.p1k chr07 74 384 823000 823311 F 311 98.71 1225 reject_low 13 ALIGNMENT 61 Y12-2e06.p1k chr07 188 77 817278 817387 C 112 87.50 1225 reject_low 22 ALIGNMENT 0 Y12-2e06.p1k chr13 824 385 184171 184170 C 440 0.00 1225 reject_low 16 ALIGNMENT 0 Y12-2e06.p1k chr04 641 640 878296 884218 F 0 0.00 1225 accept_trans 0 ALIGNMENT 279 Y12-2e06.p1k chr08 74 386 543630 543943 F 313 98.40 1225 reject_low 12 ALIGNMENT 0 Y12-2e06.p1k chr02 824 385 221041 221040 C 440 0.00 1225 reject_low 17 ALIGNMENT 279 Y12-2e06.p1k chr07 384 54 931691 932022 C 331 96.68 1225 reject_low 8 ALIGNMENT 0 Y12-2e06.p1k chr11 385 824 517426 517425 F 440 0.00 1225 reject_low 6 ALIGNMENT 71 Y12-2e06.p1k chr04 228 384 884058 884215 F 157 84.08 1225|1,0 reject_low 23 ALIGNMENT 0 Y12-2e06.p1k chr07 824 189 817279 817278 C 636 0.00 1225 reject_low 22 ALIGNMENT 82 Y12-2e06.p1k chr15 267 138 594630 594759 C 130 90.00 1225 reject_low 20 ALIGNMENT 0 Y12-2e06.p1k chr13 387 824 357337 357336 F 438 0.00 1225 reject_low 4 ALIGNMENT 259 Y12-2e06.p1k chr07 384 54 535764 536101 C 331 94.86 1225 reject_low 18 ALIGNMENT 277 Y12-2e06.p1k chr13 384 74 184170 184481 C 311 98.39 1225 reject_low 16 ALIGNMENT 0 Y12-2e06.p1k chr07 824 385 535216 535215 C 440 0.00 1225 reject_low 7 ALIGNMENT 273 Y12-2e06.p1k chr02 384 71 221040 221356 C 314 97.77 1225 reject_low 17 ALIGNMENT 0 Y12-2e06.p1k chr04 229 228 878470 884058 F 0 0.00 1225 reject_low 23 ALIGNMENT 0 Y12-2e06.p1k chr04 385 824 884215 884214 F 440 0.00 1225 reject_low 23 ALIGNMENT 285 Y12-2e06.p1k chr11 53 384 517094 517426 F 332 97.29 1225 reject_low 6 ALIGNMENT 286 Y12-2e06.p1k chr02 386 54 226622 226955 C 333 97.30 1225 reject_low 5 ALIGNMENT 65 Y12-2e06.p1k chr04 188 70 877642 877758 C 119 87.39 1225 reject_low 21 ALIGNMENT 0 Y12-2e06.p1k chr07 385 824 823311 823310 F 440 0.00 1225 reject_low 13 ALIGNMENT 287 Y12-2e06.p1k chr13 54 392 362586 362926 F 339 97.05 1225 reject_low 1 ALIGNMENT 0 Y12-2e06.p1k chr07 824 385 535765 535764 C 440 0.00 1225 reject_low 18 ALIGNMENT 0 Y12-2e06.p1k chr04 824 189 877643 877642 C 636 0.00 1225 reject_low 21 ALIGNMENT 0 Y12-2e06.p1k chr15 137 62 594760 594759 C 76 0.00 1225 reject_low 20 ALIGNMENT 0 Y12-2e06.p1k chr02 824 387 226623 226622 C 438 0.00 1225 reject_low 5 ALIGNMENT 373 Y12-2e06.p1k chr04 638 1171 884216 884755 F 534 91.39 1225|3,0 accept_trans 0 ALIGNMENT 259 Y12-2e06.p1k chr10 384 54 472377 472714 C 331 94.86 1225 reject_low 19 ALIGNMENT 449 Y12-2e06.p1k chr04 125 642 877779 878297 F 518 97.68 1225|0,2 accept_trans 0 ALIGNMENT 0 Y12-2e06.p1k chr15 824 268 594631 594630 C 557 0.00 1225 reject_low 20 ALIGNMENT 0 Y12-2e06.p1k chr04 62 124 877779 877778 F 63 0.00 1225 accept_trans 0 ALIGNMENT 0 Y12-2e06.p1k chr15 824 387 600402 600401 C 438 0.00 1225 reject_low 11 ALIGNMENT 280 Y12-2e06.p1k chr15 384 74 594821 595132 C 311 98.71 1225 reject_low 14 ALIGNMENT 0 Y12-2e07.p1k chr05 632 837 79254 79253 F 206 0.00 1214 reject_low 4 ALIGNMENT 0 Y12-2e07.p1k chr16 675 837 252333 252332 F 163 0.00 1214 reject_low 3 ALIGNMENT 582 Y12-2e07.q1k chr14 819 33 237597 238389 C 787 92.25 1132 accept_chi 0 ALIGNMENT 0 Y12-2e07.p1k chr05 62 624 79215 79214 F 563 0.00 1214 reject_low 7 ALIGNMENT 365 Y12-2e07.p1k chr16 1214 648 817966 818557 C 567 89.95 1214 reject_low 2 ALIGNMENT 0 Y12-2e07.p1k chr05 62 591 79215 79214 F 530 0.00 1214 reject_low 4 ALIGNMENT 536 Y12-2e07.p1k chr16 611 20 818531 819122 C 592 98.99 1214 accept_chi 1 ALIGNMENT 0 Y12-2e07.p1k chr16 679 837 252301 252300 F 159 0.00 1214 reject_low 5 ALIGNMENT 0 Y12-2e07.p1k chr16 62 584 187330 187329 F 523 0.00 1214 reject_low 6 ALIGNMENT 20 Y12-2e07.p1k chr16 585 680 187330 187425 F 96 81.25 1214 reject_low 6 ALIGNMENT 20 Y12-2e07.p1k chr05 625 671 79215 79261 F 47 89.36 1214 reject_low 7 ALIGNMENT 0 Y12-2e07.p1k chr16 62 584 252244 252243 F 523 0.00 1214 reject_low 3 ALIGNMENT 38 Y12-2e07.p1k chr16 585 674 252244 252333 F 90 90.00 1214 reject_low 3 ALIGNMENT 0 Y12-2e07.p1k chr16 681 837 187425 187424 F 157 0.00 1214 reject_low 6 ALIGNMENT 30 Y12-2e07.p1k chr16 617 678 252240 252301 F 62 90.32 1214 reject_low 5 ALIGNMENT 0 Y12-2e07.p1k chr16 837 612 818532 818531 C 226 0.00 1214 accept_chi 1 ALIGNMENT 0 Y12-2e07.p1k chr16 62 616 252240 252239 F 555 0.00 1214 reject_low 5 ALIGNMENT 0 Y12-2e07.p1k chr16 647 62 818558 818557 C 586 0.00 1214 reject_low 2 ALIGNMENT 0 Y12-2e07.p1k chr05 672 837 79261 79260 F 166 0.00 1214 reject_low 7 ALIGNMENT 29 Y12-2e07.p1k chr05 592 631 79215 79254 F 40 100.00 1214 reject_low 4 ALIGNMENT 0 Y12-2e08.p1k chr07 768 107 158991 158990 C 662 0.00 1218 reject_low 2 ALIGNMENT 21 Y12-2e08.p1k chr07 800 756 158905 158949 C 45 84.44 1218 reject_low 1 ALIGNMENT 21 Y12-2e08.p1k chr07 800 769 158959 158990 C 32 90.62 1218 reject_low 2 ALIGNMENT 0 Y12-2e08.p1k chr07 862 801 158960 158959 C 62 0.00 1218 reject_low 2 ALIGNMENT 0 Y12-2e08.p1k chr15 765 107 235666 235665 C 659 0.00 1218 reject_low 3 ALIGNMENT 0 Y12-2e08.p1k chr07 755 107 158950 158949 C 649 0.00 1218 reject_low 1 ALIGNMENT 0 Y12-2e08.p1k chr07 862 801 158906 158905 C 62 0.00 1218 reject_low 1 ALIGNMENT 942 Y12-2e08.p1k chr14 32 1217 343259 344449 F 1186 94.27 1218 accept 0 ALIGNMENT 20 Y12-2e08.p1k chr15 788 766 235643 235665 C 23 100.00 1218 reject_low 3 ALIGNMENT 0 Y12-2e08.p1k chr15 862 789 235644 235643 C 74 0.00 1218 reject_low 3 ALIGNMENT 966 Y12-2e08.q1k chr14 1377 40 348113 349453 C 1338 91.26 1389 accept 0 ALIGNMENT 24 Y12-2e09.q1k chr07 461 409 535214 535266 C 53 83.02 1366 reject_low 47,48 ALIGNMENT 0 Y12-2e09.q1k chr07 410 953 823312 823311 F 544 0.00 1366 reject_low 38 ALIGNMENT 303 Y12-2e09.q1k chr13 44 374 357004 357335 F 331 99.09 1366 reject_low 16 ALIGNMENT 23 Y12-2e09.q1k chr13 460 409 184170 184221 C 52 82.69 1366 reject_low 34 ALIGNMENT 0 Y12-2e09.q1k chr15 408 62 600455 600454 C 347 0.00 1366 reject_low 37 ALIGNMENT 0 Y12-2e09.q1k chr15 953 410 594821 594820 C 544 0.00 1366 reject_low 39 ALIGNMENT 0 Y12-2e09.q1k chr13 461 953 357335 357334 F 493 0.00 1366 reject_low 35 ALIGNMENT 303 Y12-2e09.q1k chr11 44 374 517095 517426 F 331 99.09 1366 reject_low 1 ALIGNMENT 291 Y12-2e09.q1k chr02 375 44 221039 221373 C 332 97.89 1366 reject_low 4 ALIGNMENT 0 Y12-2e09.q1k chr15 953 464 594819 594818 C 490 0.00 1366 reject_low 44 ALIGNMENT 23 Y12-2e09.q1k chr08 409 460 543890 543941 F 52 82.69 1366 reject_low 31 ALIGNMENT 38 Y12-2e09.q1k chr14 458 527 102631 102700 F 70 85.71 1366 reject_low 12,42 ALIGNMENT 0 Y12-2e09.q1k chr13 953 409 184171 184170 C 545 0.00 1366 reject_low 23 ALIGNMENT 0 Y12-2e09.q1k chr02 953 462 259576 259575 C 492 0.00 1366 reject_low 24 ALIGNMENT 0 Y12-2e09.q1k chr14 461 953 96941 96940 F 493 0.00 1366 reject_low 36 ALIGNMENT 0 Y12-2e09.q1k chr13 953 461 184171 184170 C 493 0.00 1366 reject_low 34 ALIGNMENT 271 Y12-2e09.q1k chr07 374 44 535764 536101 C 331 96.07 1366 reject_low 40 ALIGNMENT 0 Y12-2e09.q1k chr14 375 374 96942 102489 F 0 0.00 1366 reject_low 42 ALIGNMENT 0 Y12-2e09.q1k chr08 62 408 543890 543889 F 347 0.00 1366 reject_low 31 ALIGNMENT 0 Y12-2e09.q1k chr11 375 953 458114 458113 F 579 0.00 1366 reject_low 6 ALIGNMENT 23 Y12-2e09.q1k chr02 460 409 226624 226675 C 52 82.69 1366 reject_low 26 ALIGNMENT 0 Y12-2e09.q1k chr15 953 245 594643 594642 C 709 0.00 1366 reject_low 17 ALIGNMENT 0 Y12-2e09.q1k chr15 127 62 594760 594759 C 66 0.00 1366 reject_low 17 ALIGNMENT 0 Y12-2e09.q1k chr02 953 412 259574 259573 C 542 0.00 1366 reject_low 18 ALIGNMENT 0 Y12-2e09.q1k chr14 62 408 96890 96889 F 347 0.00 1366 reject_low 36 ALIGNMENT 0 Y12-2e09.q1k chr14 528 953 102700 102699 F 426 0.00 1366 reject_low 12,42 ALIGNMENT 883 Y12-2e09.p1k chr16 17 1095 52471 53541 F 1079 95.74 1252 accept 0 ALIGNMENT 23 Y12-2e09.q1k chr07 460 409 931691 931742 C 52 82.69 1366 reject_low 30 ALIGNMENT 29 Y12-2e09.q1k chr15 408 375 600403 600436 C 34 97.06 1366 reject_low 44 ALIGNMENT 0 Y12-2e09.q1k chr07 953 376 535215 535214 C 578 0.00 1366 reject_low 3 ALIGNMENT 0 Y12-2e09.q1k chr16 953 462 56409 56408 C 492 0.00 1366 reject_low 51 ALIGNMENT 291 Y12-2e09.q1k chr07 374 44 931691 932022 C 331 97.89 1366 reject_low 5 ALIGNMENT 0 Y12-2e09.q1k chr16 380 62 56480 56479 C 319 0.00 1366 reject_low 51 ALIGNMENT 23 Y12-2e09.q1k chr11 409 460 517375 517426 F 52 82.69 1366 reject_low 33 ALIGNMENT 282 Y12-2e09.q1k chr08 64 374 543630 543941 F 311 99.04 1366 reject_low 10 ALIGNMENT 0 Y12-2e09.q1k chr14 409 457 102524 102630 F 49 0.00 1366 reject_low 42 ALIGNMENT 0 Y12-2e09.q1k chr13 408 62 184222 184221 C 347 0.00 1366 reject_low 34 ALIGNMENT 0 Y12-2e09.q1k chr13 62 408 357284 357283 F 347 0.00 1366 reject_low 35 ALIGNMENT 0 Y12-2e09.q1k chr11 62 374 517393 517392 F 313 0.00 1366 reject_low 22 ALIGNMENT 0 Y12-2e09.q1k chr02 953 412 221038 221037 C 542 0.00 1366 reject_low 15 ALIGNMENT 0 Y12-2e09.q1k chr07 408 409 535267 535763 C 0 0.00 1366 reject_low 47 ALIGNMENT 0 Y12-2e09.q1k chr11 375 953 517426 517425 F 579 0.00 1366 reject_low 1 ALIGNMENT 0 Y12-2e09.q1k chr15 374 62 600437 600436 C 313 0.00 1366 reject_low 44 ALIGNMENT 282 Y12-2e09.q1k chr13 374 64 184170 184481 C 311 99.04 1366 reject_low 11 ALIGNMENT 0 Y12-2e09.q1k chr14 378 375 102579 102548 C 4 0.00 1366 reject_low 53 ALIGNMENT 0 Y12-2e09.q1k chr07 953 375 931692 931691 C 579 0.00 1366 reject_low 5 ALIGNMENT 271 Y12-2e09.q1k chr07 374 44 541352 541689 C 331 96.07 1366 reject_low 41 ALIGNMENT 0 Y12-2e09.q1k chr07 62 408 817678 817677 F 347 0.00 1366 reject_low 29 ALIGNMENT 285 Y12-2e09.q1k chr07 64 375 823000 823312 F 312 99.36 1366 reject_low 7 ALIGNMENT 301 Y12-2e09.q1k chr07 375 44 535214 535546 C 332 98.80 1366 reject_low 3 ALIGNMENT 30 Y12-2e09.q1k chr07 409 375 535214 535248 C 35 97.14 1366 reject_low 40,41 ALIGNMENT 38 Y12-2e09.q1k chr16 375 332 56408 56451 C 44 97.73 1366 reject_low 52 ALIGNMENT 23 Y12-2e09.q1k chr14 409 460 102472 102523 F 52 82.69 1366 reject_low 50 ALIGNMENT 0 Y12-2e09.q1k chr02 374 62 259610 259609 C 313 0.00 1366 reject_low 18 ALIGNMENT 285 Y12-2e09.q1k chr15 374 64 600403 600714 C 311 99.36 1366 reject_low 39 ALIGNMENT 0 Y12-2e09.q1k chr13 409 953 362917 362916 F 545 0.00 1366 reject_low 16 ALIGNMENT 285 Y12-2e09.q1k chr15 375 64 594820 595132 C 312 99.36 1366 reject_low 8 ALIGNMENT 29 Y12-2e09.q1k chr14 375 408 102490 102523 F 34 97.06 1366 reject_low 42 ALIGNMENT 29 Y12-2e09.q1k chr02 408 375 226624 226657 C 34 97.06 1366 reject_low 46 ALIGNMENT 20 Y12-2e09.q1k chr14 460 437 102549 102572 C 24 95.83 1366 reject_low 53 ALIGNMENT 0 Y12-2e09.q1k chr07 375 374 817730 823277 F 0 0.00 1366 reject_low 38 ALIGNMENT 0 Y12-2e09.q1k chr16 953 375 56358 56357 C 579 0.00 1366 reject_low 43 ALIGNMENT 0 Y12-2e09.q1k chr13 375 953 362917 362916 F 579 0.00 1366 reject_low 2 ALIGNMENT 20 Y12-2e09.q1k chr16 374 323 56357 56408 C 52 82.69 1366 reject_low 43 ALIGNMENT 29 Y12-2e09.q1k chr11 375 408 517393 517426 F 34 97.06 1366 reject_low 22 ALIGNMENT 0 Y12-2e09.q1k chr16 953 409 56358 56357 C 545 0.00 1366 reject_low 52 ALIGNMENT 342 Y12-2e09.q1k chr16 708 184 56110 56648 C 525 90.10 1366 accept 0 ALIGNMENT 0 Y12-2e09.q1k chr15 953 376 594821 594820 C 578 0.00 1366 reject_low 8 ALIGNMENT 0 Y12-2e09.q1k chr08 62 374 543908 543907 F 313 0.00 1366 reject_low 20 ALIGNMENT 31 Y12-2e09.q1k chr02 411 375 221037 221073 C 37 97.30 1366 reject_low 15 ALIGNMENT 0 Y12-2e09.q1k chr07 376 953 823312 823311 F 578 0.00 1366 reject_low 7 ALIGNMENT 0 Y12-2e09.q1k chr11 62 408 458063 458062 F 347 0.00 1366 reject_low 32 ALIGNMENT 0 Y12-2e09.q1k chr02 374 62 226658 226657 C 313 0.00 1366 reject_low 46 ALIGNMENT 0 Y12-2e09.q1k chr15 374 375 594855 600402 C 0 0.00 1366 reject_low 39 ALIGNMENT 0 Y12-2e09.q1k chr11 461 953 458114 458113 F 493 0.00 1366 reject_low 32 ALIGNMENT 0 Y12-2e09.q1k chr07 408 409 535267 541351 C 0 0.00 1366 reject_low 48 ALIGNMENT 29 Y12-2e09.q1k chr07 408 375 931691 931724 C 34 97.06 1366 reject_low 19 ALIGNMENT 23 Y12-2e09.q1k chr15 460 409 600403 600454 C 52 82.69 1366 reject_low 37 ALIGNMENT 0 Y12-2e09.q1k chr02 374 375 221074 226623 C 0 0.00 1366 reject_low 15 ALIGNMENT 0 Y12-2e09.q1k chr07 374 62 535798 535797 C 313 0.00 1366 reject_low 47 ALIGNMENT 0 Y12-2e09.q1k chr11 62 408 517375 517374 F 347 0.00 1366 reject_low 33 ALIGNMENT 23 Y12-2e09.q1k chr11 409 460 458063 458114 F 52 82.69 1366 reject_low 32 ALIGNMENT 0 Y12-2e09.q1k chr16 953 709 56111 56110 C 245 0.00 1366 accept 0 ALIGNMENT 0 Y12-2e09.q1k chr07 408 62 535816 535815 C 347 0.00 1366 reject_low 27 ALIGNMENT 0 Y12-2e09.q1k chr15 408 409 594873 600402 C 0 0.00 1366 reject_low 44 ALIGNMENT 0 Y12-2e09.q1k chr13 62 374 357302 357301 F 313 0.00 1366 reject_low 49 ALIGNMENT 0 Y12-2e09.q1k chr14 62 374 96908 96907 F 313 0.00 1366 reject_low 50 ALIGNMENT 0 Y12-2e09.q1k chr13 461 953 362917 362916 F 493 0.00 1366 reject_low 49 ALIGNMENT 0 Y12-2e09.q1k chr08 409 953 543941 543940 F 545 0.00 1366 reject_low 20 ALIGNMENT 0 Y12-2e09.q1k chr16 331 62 56452 56451 C 270 0.00 1366 reject_low 52 ALIGNMENT 26 Y12-2e09.q1k chr14 408 379 102549 102578 C 30 96.67 1366 reject_low 53 ALIGNMENT 0 Y12-2e09.q1k chr02 953 462 221040 221039 C 492 0.00 1366 reject_low 46 ALIGNMENT 207 Y12-2e09.q1k chr01 44 378 165827 166167 F 335 89.55 1366 reject_low 14 ALIGNMENT 25 Y12-2e09.q1k chr15 463 409 594818 594872 C 55 83.64 1366 reject_low 44 ALIGNMENT 0 Y12-2e09.q1k chr07 374 375 535249 535763 C 0 0.00 1366 reject_low 40 ALIGNMENT 0 Y12-2e09.q1k chr02 408 62 226676 226675 C 347 0.00 1366 reject_low 26 ALIGNMENT 0 Y12-2e09.q1k chr13 953 375 184171 184170 C 579 0.00 1366 reject_low 11 ALIGNMENT 0 Y12-2e09.q1k chr07 953 461 541353 541352 C 493 0.00 1366 reject_low 28 ALIGNMENT 0 Y12-2e09.q1k chr07 374 62 541386 541385 C 313 0.00 1366 reject_low 48 ALIGNMENT 0 Y12-2e09.q1k chr11 461 953 517426 517425 F 493 0.00 1366 reject_low 33 ALIGNMENT 0 Y12-2e09.q1k chr11 62 374 458081 458080 F 313 0.00 1366 reject_low 21 ALIGNMENT 25 Y12-2e09.q1k chr07 409 462 823260 823313 F 54 83.33 1366 reject_low 45 ALIGNMENT 0 Y12-2e09.q1k chr02 953 376 221040 221039 C 578 0.00 1366 reject_low 4 ALIGNMENT 0 Y12-2e09.q1k chr07 408 62 541404 541403 C 347 0.00 1366 reject_low 28 ALIGNMENT 0 Y12-2e09.q1k chr07 953 461 931692 931691 C 493 0.00 1366 reject_low 30 ALIGNMENT 0 Y12-2e09.q1k chr07 953 461 535765 535764 C 493 0.00 1366 reject_low 27 ALIGNMENT 0 Y12-2e09.q1k chr07 374 62 931725 931724 C 313 0.00 1366 reject_low 19 ALIGNMENT 0 Y12-2e09.q1k chr07 62 374 817696 817695 F 313 0.00 1366 reject_low 45 ALIGNMENT 0 Y12-2e09.q1k chr02 408 409 221092 226623 C 0 0.00 1366 reject_low 46 ALIGNMENT 29 Y12-2e09.q1k chr07 408 375 541352 541385 C 34 97.06 1366 reject_low 48 ALIGNMENT 0 Y12-2e09.q1k chr14 375 457 102524 102630 F 83 0.00 1366 reject_low 12 ALIGNMENT 0 Y12-2e09.q1k chr14 436 409 102573 102548 C 28 0.00 1366 reject_low 53 ALIGNMENT 0 Y12-2e09.q1k chr11 409 953 458114 458113 F 545 0.00 1366 reject_low 21 ALIGNMENT 0 Y12-2e09.q1k chr02 953 461 226625 226624 C 493 0.00 1366 reject_low 26 ALIGNMENT 0 Y12-2e09.q1k chr11 409 953 517426 517425 F 545 0.00 1366 reject_low 22 ALIGNMENT 0 Y12-2e09.q1k chr07 463 953 823313 823312 F 491 0.00 1366 reject_low 45 ALIGNMENT 0 Y12-2e09.q1k chr01 375 953 160575 160574 F 579 0.00 1366 reject_low 13 ALIGNMENT 0 Y12-2e09.q1k chr14 953 461 102550 102549 C 493 0.00 1366 reject_low 53 ALIGNMENT 0 Y12-2e09.q1k chr16 429 411 56440 56449 C 19 0.00 1366 reject_low 51 ALIGNMENT 30 Y12-2e09.q1k chr07 375 409 823278 823312 F 35 97.14 1366 reject_low 38 ALIGNMENT 23 Y12-2e09.q1k chr13 409 460 362866 362917 F 52 82.69 1366 reject_low 49 ALIGNMENT 24 Y12-2e09.q1k chr02 461 409 259575 259627 C 53 83.02 1366 reject_low 24 ALIGNMENT 23 Y12-2e09.q1k chr07 460 409 541352 541403 C 52 82.69 1366 reject_low 28 ALIGNMENT 29 Y12-2e09.q1k chr13 408 375 184170 184203 C 34 97.06 1366 reject_low 23 ALIGNMENT 0 Y12-2e09.q1k chr07 408 62 931743 931742 C 347 0.00 1366 reject_low 30 ALIGNMENT 0 Y12-2e09.q1k chr07 953 409 931692 931691 C 545 0.00 1366 reject_low 19 ALIGNMENT 22 Y12-2e09.q1k chr16 410 381 56450 56479 C 30 93.33 1366 reject_low 51 ALIGNMENT 0 Y12-2e09.q1k chr14 344 62 102579 102578 C 283 0.00 1366 reject_low 53 ALIGNMENT 303 Y12-2e09.q1k chr02 374 44 226624 226955 C 331 99.09 1366 reject_low 15 ALIGNMENT 0 Y12-2e09.q1k chr08 375 953 543941 543940 F 579 0.00 1366 reject_low 10 ALIGNMENT 300 Y12-2e09.q1k chr14 44 374 102192 102523 F 331 98.79 1366 reject_low 12 ALIGNMENT 0 Y12-2e09.q1k chr14 409 408 96942 102471 F 0 0.00 1366 reject_low 50 ALIGNMENT 29 Y12-2e09.q1k chr11 375 408 458081 458114 F 34 97.06 1366 reject_low 21 ALIGNMENT 0 Y12-2e09.q1k chr14 461 953 102523 102522 F 493 0.00 1366 reject_low 50 ALIGNMENT 23 Y12-2e09.q1k chr13 409 460 357284 357335 F 52 82.69 1366 reject_low 35 ALIGNMENT 58 Y12-2e09.q1k chr07 217 67 817241 817387 C 151 83.44 1366 reject_low 25 ALIGNMENT 23 Y12-2e09.q1k chr07 409 460 817678 817729 F 52 82.69 1366 reject_low 29 ALIGNMENT 23 Y12-2e09.q1k chr16 408 378 56357 56387 C 31 93.55 1366 reject_low 52 ALIGNMENT 0 Y12-2e09.q1k chr07 953 218 817242 817241 C 736 0.00 1366 reject_low 25 ALIGNMENT 0 Y12-2e09.q1k chr07 374 375 535249 541351 C 0 0.00 1366 reject_low 41 ALIGNMENT 0 Y12-2e09.q1k chr15 953 461 600404 600403 C 493 0.00 1366 reject_low 37 ALIGNMENT 0 Y12-2e09.q1k chr02 408 62 259628 259627 C 347 0.00 1366 reject_low 24 ALIGNMENT 29 Y12-2e09.q1k chr14 374 345 102549 102578 C 30 100.00 1366 reject_low 53 ALIGNMENT 0 Y12-2e09.q1k chr02 953 376 259576 259575 C 578 0.00 1366 reject_low 9 ALIGNMENT 0 Y12-2e09.q1k chr07 461 953 817729 817728 F 493 0.00 1366 reject_low 29 ALIGNMENT 30 Y12-2e09.q1k chr15 409 375 594820 594854 C 35 97.14 1366 reject_low 39 ALIGNMENT 303 Y12-2e09.q1k chr13 44 374 362586 362917 F 331 99.09 1366 reject_low 2 ALIGNMENT 0 Y12-2e09.q1k chr16 322 62 56409 56408 C 261 0.00 1366 reject_low 43 ALIGNMENT 0 Y12-2e09.q1k chr13 374 62 184204 184203 C 313 0.00 1366 reject_low 23 ALIGNMENT 24 Y12-2e09.q1k chr02 461 409 221039 221091 C 53 83.02 1366 reject_low 46 ALIGNMENT 29 Y12-2e09.q1k chr14 375 408 96908 96941 F 34 97.06 1366 reject_low 50 ALIGNMENT 24 Y12-2e09.q1k chr16 461 430 56408 56439 C 32 93.75 1366 reject_low 51 ALIGNMENT 0 Y12-2e09.q1k chr07 409 408 817730 823259 F 0 0.00 1366 reject_low 45 ALIGNMENT 0 Y12-2e09.q1k chr13 409 408 357336 362865 F 0 0.00 1366 reject_low 49 ALIGNMENT 29 Y12-2e09.q1k chr07 375 408 817696 817729 F 34 97.06 1366 reject_low 45 ALIGNMENT 0 Y12-2e09.q1k chr07 953 462 535215 535214 C 492 0.00 1366 reject_low 47,48 ALIGNMENT 29 Y12-2e09.q1k chr13 375 408 362884 362917 F 34 97.06 1366 reject_low 16 ALIGNMENT 23 Y12-2e09.q1k chr14 409 460 96890 96941 F 52 82.69 1366 reject_low 36 ALIGNMENT 71 Y12-2e09.q1k chr15 244 128 594642 594759 C 117 89.74 1366 reject_low 17 ALIGNMENT 285 Y12-2e09.q1k chr07 64 374 817418 817729 F 311 99.36 1366 reject_low 38 ALIGNMENT 29 Y12-2e09.q1k chr08 375 408 543908 543941 F 34 97.06 1366 reject_low 20 ALIGNMENT 285 Y12-2e09.q1k chr11 44 374 457783 458114 F 331 97.28 1366 reject_low 6 ALIGNMENT 0 Y12-2e09.q1k chr13 375 374 357336 362883 F 0 0.00 1366 reject_low 16 ALIGNMENT 0 Y12-2e09.q1k chr16 183 62 56649 56648 C 122 0.00 1366 accept 0 ALIGNMENT 23 Y12-2e09.q1k chr07 460 409 535764 535815 C 52 82.69 1366 reject_low 27 ALIGNMENT 29 Y12-2e09.q1k chr07 408 375 535764 535797 C 34 97.06 1366 reject_low 47 ALIGNMENT 207 Y12-2e09.q1k chr01 40 374 160235 160575 F 335 89.55 1366 reject_low 13 ALIGNMENT 0 Y12-2e09.q1k chr08 461 953 543941 543940 F 493 0.00 1366 reject_low 31 ALIGNMENT 282 Y12-2e09.q1k chr02 375 64 259575 259887 C 312 99.04 1366 reject_low 9 ALIGNMENT 31 Y12-2e09.q1k chr02 411 375 259573 259609 C 37 97.30 1366 reject_low 18 ALIGNMENT 0 Y12-2e09.q1k chr01 379 953 166167 166166 F 575 0.00 1366 reject_low 14 ALIGNMENT 0 Y12-2e09.q1k chr16 377 376 56388 56407 C 2 0.00 1366 reject_low 52 ALIGNMENT 29 Y12-2e09.q1k chr13 375 408 357302 357335 F 34 97.06 1366 reject_low 49 ALIGNMENT 300 Y12-2e09.q1k chr14 44 374 96610 96941 F 331 98.79 1366 reject_low 42 ALIGNMENT 0 Y12-2e09.q1k chr07 953 410 535215 535214 C 544 0.00 1366 reject_low 40,41 ALIGNMENT 0 Y12-2e10.p1k chr01 313 245 108070 108136 C 69 0.00 1269 reject_low 1 ALIGNMENT 744 Y12-2e10.p1k chr15 25 1007 916201 917176 F 983 93.18 1269 accept 0 ALIGNMENT 24 Y12-2e10.p1k chr01 602 556 107781 107827 C 47 85.11 1269 reject_low 1 ALIGNMENT 22 Y12-2e10.p1k chr01 463 314 107920 108069 C 150 72.67 1269 reject_low 1 ALIGNMENT 0 Y12-2e10.p1k chr01 555 464 107828 107919 C 92 0.00 1269 reject_low 1 ALIGNMENT 54 Y12-2e10.p1k chr01 244 97 108137 108282 C 148 80.41 1269 reject_low 1 ALIGNMENT 1053 Y12-2e10.q1k chr15 1279 35 919384 920650 C 1245 95.66 1372 accept 0 ALIGNMENT 0 Y12-2e10.p1k chr01 638 603 107782 107781 C 36 0.00 1269 reject_low 1 ALIGNMENT 994 Y12-2e12.p1k chr05 1234 20 536922 538143 C 1215 94.90 1236 accept_chi 0 ALIGNMENT 728 Y12-2e12.q1k chr16 964 36 561976 562910 C 929 93.76 1165 accept_chi 1 ALIGNMENT 1031 Y12-2e13.p1k chr05 22 1221 153138 154338 F 1200 96.17 1233 accept 0 ALIGNMENT 956 Y12-2e13.q1k chr05 1150 39 157556 158669 C 1112 95.59 1379 accept 0 ALIGNMENT 934 Y12-2e14.p1k chr07 20 1176 933025 934172 F 1157 95.68 1240 accept 0 ALIGNMENT 976 Y12-2e14.q1k chr07 1173 40 936137 937283 C 1134 96.12 1283 accept 0 ALIGNMENT 1052 Y12-2e15.q1k chr12 1312 35 463580 464859 C 1278 95.23 1414 accept 1 ALIGNMENT 776 Y12-2e15.p1k chr12 266 1180 452999 453902 F 915 96.07 1257 accept 0 ALIGNMENT 776 Y12-2e15.p1k chr12 266 1180 462136 463039 F 915 96.07 1257 accept 1 ALIGNMENT 1052 Y12-2e15.q1k chr12 1312 35 454443 455722 C 1278 95.23 1414 accept 0 ALIGNMENT 990 Y12-2e16.q1k chr10 35 1216 210180 211373 F 1182 95.35 1304 accept 0 ALIGNMENT 800 Y12-2e16.p1k chr10 1214 253 214140 215106 C 962 95.53 1222 accept 0 ALIGNMENT 875 Y12-2e19.q1k chr03 35 1005 246607 247589 F 971 97.01 1290 accept 0 ALIGNMENT 926 Y12-2e19.p1k chr03 1130 16 250709 251862 C 1115 95.61 1160 accept 0 ALIGNMENT 999 Y12-2e20.q1k chr04 1137 39 127635 128733 C 1099 97.00 1301 accept 0 ALIGNMENT 0 Y12-2e20.p1k chr04 62 826 219674 219673 F 765 0.00 1177 reject_low 1 ALIGNMENT 964 Y12-2e20.p1k chr04 26 1145 123077 124207 F 1120 96.25 1177 accept 0 ALIGNMENT 114 Y12-2e20.p1k chr04 827 1145 219674 220003 F 319 79.94 1177 reject_low 1 ALIGNMENT 567 Y12-2e21.q1k chr15 731 31 334322 335035 C 701 94.58 1118 accept 0 ALIGNMENT 950 Y12-2e21.p1k chr15 29 1103 329256 330327 F 1075 96.84 1166 accept 0 ALIGNMENT 969 Y12-2e22.q1k chr16 1173 35 429022 430153 C 1139 96.40 1212 accept 0 ALIGNMENT 719 Y12-2e22.p1k chr16 256 1151 426467 427369 F 896 94.87 1151 accept 0 ALIGNMENT 709 Y12-2e23.p1k chr10 1115 267 85341 86179 C 849 96.11 1148 accept 0 ALIGNMENT 1051 Y12-2e23.q1k chr10 36 1202 82351 83519 F 1167 97.17 1263 accept 0 ALIGNMENT 657 Y12-2e24.p1k chr11 286 1107 321431 322242 F 822 94.77 1140 accept_chi 1 ALIGNMENT 877 Y12-2e24.q1k chr14 35 1063 662812 663830 F 1029 95.82 1224 accept_chi 0 ALIGNMENT 530 Y12-2f02.q1k chr12 40 819 148412 149179 F 780 90.77 1313 accept 0 ALIGNMENT 572 Y12-2f03.p1k chr11 1072 278 233371 234150 C 795 93.46 1267 accept 0 ALIGNMENT 941 Y12-2f03.q1k chr11 32 1135 230030 231140 F 1104 95.83 1333 accept 0 ALIGNMENT 532 Y12-2f04.q1k chr09 54 799 29020 29757 F 746 91.55 1385 accept 0 ALIGNMENT 73 Y12-2f05.q1k chr12 466 148 650820 651142 C 319 77.43 1335 reject_low 2 ALIGNMENT 0 Y12-2f05.q1k chr07 281 62 412639 412638 C 220 0.00 1335 reject_low 14 ALIGNMENT 41 Y12-2f05.q1k chr15 373 308 354766 354830 C 66 90.91 1335 reject_low 15 ALIGNMENT 0 Y12-2f05.q1k chr14 130 62 519498 519497 C 69 0.00 1335 reject_low 7 ALIGNMENT 0 Y12-2f05.q1k chr07 815 423 327948 327947 C 393 0.00 1335 reject_low 5 ALIGNMENT 0 Y12-2f05.q1k chr04 319 62 1353063 1353062 C 258 0.00 1335 reject_low 16 ALIGNMENT 75 Y12-2f05.q1k chr14 440 131 519184 519497 C 310 78.06 1335 reject_low 7 ALIGNMENT 0 Y12-2f05.q1k chr11 62 131 313248 313247 F 70 0.00 1335 reject_low 6 ALIGNMENT 0 Y12-2f05.q1k chr16 139 62 62998 62997 C 78 0.00 1335 reject_low 11 ALIGNMENT 0 Y12-2f05.q1k chr13 62 126 481209 481208 F 65 0.00 1335 reject_low 9 ALIGNMENT 0 Y12-2f05.q1k chr12 815 467 650821 650820 C 349 0.00 1335 reject_low 2 ALIGNMENT 39 Y12-2f05.q1k chr07 375 282 412543 412638 C 94 85.11 1335 reject_low 14 ALIGNMENT 96 Y12-2f05.q1k chr06 407 151 158409 158664 C 257 81.71 1335 reject_low 3 ALIGNMENT 49 Y12-2f05.q1k chr04 440 141 986812 987113 C 300 76.00 1335 reject_low 12 ALIGNMENT 0 Y12-2f05.q1k chr12 211 62 688622 688621 C 150 0.00 1335 reject_low 10 ALIGNMENT 64 Y12-2f05.q1k chr13 127 440 481209 481525 F 314 76.43 1335 reject_low 9 ALIGNMENT 623 Y12-2f05.p1k chr12 1105 262 1055015 1055847 C 844 92.89 1252 accept 0 ALIGNMENT 0 Y12-2f05.q1k chr04 140 62 987114 987113 C 79 0.00 1335 reject_low 12 ALIGNMENT 0 Y12-2f05.q1k chr03 815 427 149515 149514 C 389 0.00 1335 reject_low 1 ALIGNMENT 0 Y12-2f05.q1k chr07 212 62 328157 328156 C 151 0.00 1335 reject_low 5 ALIGNMENT 0 Y12-2f05.q1k chr06 150 62 158665 158664 C 89 0.00 1335 reject_low 3 ALIGNMENT 937 Y12-2f05.q1k chr12 36 1070 1052205 1053246 F 1035 98.36 1335 accept 0 ALIGNMENT 0 Y12-2f05.q1k chr04 408 815 434698 434697 F 408 0.00 1335 reject_low 4 ALIGNMENT 0 Y12-2f05.q1k chr15 815 374 354767 354766 C 442 0.00 1335 reject_low 15 ALIGNMENT 0 Y12-2f05.q1k chr12 147 62 651143 651142 C 86 0.00 1335 reject_low 2 ALIGNMENT 0 Y12-2f05.q1k chr15 307 62 354831 354830 C 246 0.00 1335 reject_low 15 ALIGNMENT 55 Y12-2f05.q1k chr16 407 140 62728 62997 C 268 75.75 1335 reject_low 11 ALIGNMENT 0 Y12-2f05.q1k chr16 815 367 776179 776178 C 449 0.00 1335 reject_low 8 ALIGNMENT 82 Y12-2f05.q1k chr16 366 140 776178 776402 C 227 81.50 1335 reject_low 8 ALIGNMENT 0 Y12-2f05.q1k chr06 815 408 158410 158409 C 408 0.00 1335 reject_low 3 ALIGNMENT 33 Y12-2f05.q1k chr04 416 320 1352966 1353062 C 97 80.41 1335 reject_low 16 ALIGNMENT 0 Y12-2f05.q1k chr12 815 427 688407 688406 C 389 0.00 1335 reject_low 10 ALIGNMENT 71 Y12-2f05.q1k chr12 426 212 688406 688621 C 215 80.47 1335 reject_low 10 ALIGNMENT 0 Y12-2f05.q1k chr04 815 417 1352967 1352966 C 399 0.00 1335 reject_low 16 ALIGNMENT 0 Y12-2f05.q1k chr16 815 408 62729 62728 C 408 0.00 1335 reject_low 11 ALIGNMENT 0 Y12-2f05.q1k chr16 139 62 776403 776402 C 78 0.00 1335 reject_low 8 ALIGNMENT 0 Y12-2f05.q1k chr14 815 441 519185 519184 C 375 0.00 1335 reject_low 7 ALIGNMENT 0 Y12-2f05.q1k chr07 815 376 412544 412543 C 440 0.00 1335 reject_low 14 ALIGNMENT 88 Y12-2f05.q1k chr04 131 407 434420 434698 F 277 80.51 1335 reject_low 4 ALIGNMENT 83 Y12-2f05.q1k chr11 132 407 313248 313525 F 276 80.43 1335 reject_low 6 ALIGNMENT 0 Y12-2f05.q1k chr11 408 815 313525 313524 F 408 0.00 1335 reject_low 6 ALIGNMENT 0 Y12-2f05.q1k chr04 62 130 434420 434419 F 69 0.00 1335 reject_low 4 ALIGNMENT 43 Y12-2f05.q1k chr16 308 405 850357 850453 F 98 84.69 1335 reject_low 13 ALIGNMENT 0 Y12-2f05.q1k chr03 150 62 149788 149787 C 89 0.00 1335 reject_low 1 ALIGNMENT 95 Y12-2f05.q1k chr07 422 213 327947 328156 C 210 83.81 1335 reject_low 5 ALIGNMENT 0 Y12-2f05.q1k chr16 62 307 850357 850356 F 246 0.00 1335 reject_low 13 ALIGNMENT 0 Y12-2f05.q1k chr16 406 815 850453 850452 F 410 0.00 1335 reject_low 13 ALIGNMENT 0 Y12-2f05.q1k chr04 815 441 986813 986812 C 375 0.00 1335 reject_low 12 ALIGNMENT 0 Y12-2f05.q1k chr13 441 815 481525 481524 F 375 0.00 1335 reject_low 9 ALIGNMENT 116 Y12-2f05.q1k chr03 426 151 149514 149787 C 276 83.70 1335 reject_low 1 ALIGNMENT 0 Y12-2f06.p1k chr14 789 530 569857 569856 C 260 0.00 1222 reject_low 10 ALIGNMENT 83 Y12-2f06.p1k chr14 529 443 569856 569942 C 87 98.85 1222 reject_low 10 ALIGNMENT 0 Y12-2f06.p1k chr16 789 286 856214 856213 C 504 0.00 1222 reject_low 11 ALIGNMENT 89 Y12-2f06.p1k chr06 30 265 158430 158664 F 236 81.78 1222 reject_low 2 ALIGNMENT 0 Y12-2f06.p1k chr14 62 441 602311 602310 F 380 0.00 1222 reject_low 12 ALIGNMENT 0 Y12-2f06.p1k chr16 277 789 776402 776401 F 513 0.00 1222 reject_low 5 ALIGNMENT 0 Y12-2f06.p1k chr16 789 520 880291 880290 C 270 0.00 1222 reject_low 17 ALIGNMENT 0 Y12-2f06.p1k chr13 789 290 481210 481209 C 500 0.00 1222 reject_low 20 ALIGNMENT 85 Y12-2f06.p1k chr07 20 203 327972 328156 F 184 84.24 1222 reject_low 3 ALIGNMENT 77 Y12-2f06.p1k chr16 285 70 850625 850847 C 216 81.48 1222 reject_low 8 ALIGNMENT 0 Y12-2f06.p1k chr09 438 62 183516 183515 C 377 0.00 1222 reject_low 9 ALIGNMENT 0 Y12-2f06.p1k chr04 789 286 434421 434420 C 504 0.00 1222 reject_low 4 ALIGNMENT 0 Y12-2f06.p1k chr16 526 789 819607 819606 F 264 0.00 1222 reject_low 15 ALIGNMENT 0 Y12-2f06.p1k chr05 442 286 443273 443392 C 157 0.00 1222 reject_low 23 ALIGNMENT 71 Y12-2f06.p1k chr16 285 70 856213 856435 C 216 80.56 1222 reject_low 11 ALIGNMENT 0 Y12-2f06.p1k chr16 62 441 819523 819522 F 380 0.00 1222 reject_low 15 ALIGNMENT 0 Y12-2f06.p1k chr03 266 789 149787 149786 F 524 0.00 1222 reject_low 1 ALIGNMENT 964 Y12-2f06.q1k chr12 39 1094 1048662 1049725 F 1056 97.73 1312 accept 0 ALIGNMENT 82 Y12-2f06.p1k chr05 285 46 443393 443639 C 240 80.83 1222 reject_low 23 ALIGNMENT 0 Y12-2f06.p1k chr16 789 286 850626 850625 C 504 0.00 1222 reject_low 8 ALIGNMENT 79 Y12-2f06.p1k chr12 443 525 734803 734886 F 83 98.80 1222 reject_low 16 ALIGNMENT 76 Y12-2f06.p1k chr11 284 30 313248 313504 C 255 80.39 1222 reject_low 7 ALIGNMENT 0 Y12-2f06.p1k chr04 442 62 668077 668076 C 381 0.00 1222 reject_low 14 ALIGNMENT 0 Y12-2f06.p1k chr14 442 62 569943 569942 C 381 0.00 1222 reject_low 10 ALIGNMENT 0 Y12-2f06.p1k chr09 62 442 210661 210660 F 381 0.00 1222 reject_low 6 ALIGNMENT 78 Y12-2f06.p1k chr16 519 442 880290 880367 C 78 100.00 1222 reject_low 17 ALIGNMENT 0 Y12-2f06.p1k chr07 62 443 739127 739126 F 382 0.00 1222 reject_low 19 ALIGNMENT 79 Y12-2f06.p1k chr02 440 524 197493 197577 F 85 97.65 1222 reject_low 13 ALIGNMENT 0 Y12-2f06.p1k chr14 528 789 602396 602395 F 262 0.00 1222 reject_low 12 ALIGNMENT 0 Y12-2f06.p1k chr05 443 62 551354 551353 C 382 0.00 1222 reject_low 18 ALIGNMENT 80 Y12-2f06.p1k chr16 442 525 819523 819607 F 84 98.81 1222 reject_low 15 ALIGNMENT 0 Y12-2f06.p1k chr09 532 789 210748 210747 F 258 0.00 1222 reject_low 6 ALIGNMENT 0 Y12-2f06.p1k chr05 789 529 443189 443188 C 261 0.00 1222 reject_low 23 ALIGNMENT 40 Y12-2f06.p1k chr16 108 37 850357 850427 C 72 88.89 1222 reject_low 21 ALIGNMENT 81 Y12-2f06.p1k chr05 528 443 443188 443272 C 86 98.84 1222 reject_low 23 ALIGNMENT 0 Y12-2f06.p1k chr09 789 526 183429 183428 C 264 0.00 1222 reject_low 9 ALIGNMENT 0 Y12-2f06.p1k chr12 62 442 734803 734802 F 381 0.00 1222 reject_low 16 ALIGNMENT 0 Y12-2f06.p1k chr06 266 789 158664 158663 F 524 0.00 1222 reject_low 2 ALIGNMENT 0 Y12-2f06.p1k chr16 441 62 880368 880367 C 380 0.00 1222 reject_low 17 ALIGNMENT 0 Y12-2f06.p1k chr03 107 789 84218 84217 F 683 0.00 1222 reject_low 22 ALIGNMENT 0 Y12-2f06.p1k chr07 204 789 328156 328155 F 586 0.00 1222 reject_low 3 ALIGNMENT 83 Y12-2f06.p1k chr14 442 527 602311 602396 F 86 98.84 1222 reject_low 12 ALIGNMENT 0 Y12-2f06.p1k chr02 62 439 197493 197492 F 378 0.00 1222 reject_low 13 ALIGNMENT 36 Y12-2f06.p1k chr03 46 106 84158 84218 F 61 88.52 1222 reject_low 22 ALIGNMENT 80 Y12-2f06.p1k chr04 529 443 667990 668076 C 87 97.70 1222 reject_low 14 ALIGNMENT 99 Y12-2f06.p1k chr03 20 265 149543 149787 F 246 83.33 1222 reject_low 1 ALIGNMENT 0 Y12-2f06.p1k chr12 526 789 734886 734885 F 264 0.00 1222 reject_low 16 ALIGNMENT 76 Y12-2f06.p1k chr05 525 444 551272 551353 C 82 97.56 1222 reject_low 18 ALIGNMENT 0 Y12-2f06.p1k chr05 789 526 551273 551272 C 264 0.00 1222 reject_low 18 ALIGNMENT 0 Y12-2f06.p1k chr11 789 285 313249 313248 C 505 0.00 1222 reject_low 7 ALIGNMENT 81 Y12-2f06.p1k chr04 285 20 434420 434688 C 266 80.08 1222 reject_low 4 ALIGNMENT 82 Y12-2f06.p1k chr16 50 276 776178 776402 F 227 81.50 1222 reject_low 5 ALIGNMENT 0 Y12-2f06.p1k chr04 789 530 667991 667990 C 260 0.00 1222 reject_low 14 ALIGNMENT 76 Y12-2f06.p1k chr07 444 519 739127 739202 F 76 100.00 1222 reject_low 19 ALIGNMENT 0 Y12-2f06.p1k chr07 520 789 739202 739201 F 270 0.00 1222 reject_low 19 ALIGNMENT 46 Y12-2f06.p1k chr13 289 20 481209 481482 C 270 75.56 1222 reject_low 20 ALIGNMENT 0 Y12-2f06.p1k chr16 789 109 850358 850357 C 681 0.00 1222 reject_low 21 ALIGNMENT 81 Y12-2f06.p1k chr09 443 531 210661 210748 F 89 97.75 1222 reject_low 6 ALIGNMENT 0 Y12-2f06.p1k chr02 525 789 197577 197576 F 265 0.00 1222 reject_low 13 ALIGNMENT 979 Y12-2f06.p1k chr12 1197 20 1051384 1052566 C 1178 95.42 1222 accept 0 ALIGNMENT 80 Y12-2f06.p1k chr09 525 439 183428 183515 C 87 97.70 1222 reject_low 9 ALIGNMENT 0 Y12-2f07.q1k chr07 651 891 148594 148593 F 241 0.00 1293 reject_low 1 ALIGNMENT 899 Y12-2f07.q1k chr05 1124 37 423452 424561 C 1088 94.76 1293 accept 0 ALIGNMENT 0 Y12-2f07.q1k chr07 62 290 148235 148234 F 229 0.00 1293 reject_low 1 ALIGNMENT 271 Y12-2f07.q1k chr07 291 650 148235 148594 F 360 92.22 1293 reject_low 1 ALIGNMENT 957 Y12-2f07.p1k chr05 20 1173 419555 420728 F 1154 95.23 1230 accept 0 ALIGNMENT 988 Y12-2f08.p1k chr05 1219 20 159861 161062 C 1200 94.75 1244 accept 0 ALIGNMENT 765 Y12-2f08.q1k chr05 37 1073 155743 156789 F 1037 93.83 1276 accept 0 ALIGNMENT 0 Y12-2f09.p1k chr07 62 260 1084352 1084351 F 199 0.00 1344 ambiguous_tel 7 ALIGNMENT 0 Y12-2f09.p1k chr05 62 260 570325 570324 F 199 0.00 1344 ambiguous_tel 6 ALIGNMENT 0 Y12-2f09.p1k chr10 710 215 6 5 C 496 0.00 1344 ambiguous_tel 19 ALIGNMENT 0 Y12-2f09.p1k chr15 178 710 1091287 1091286 F 533 0.00 1344 ambiguous_tel 22 ALIGNMENT 531 Y12-2f09.p1k chr13 973 216 4836 5584 C 758 92.35 1344 ambiguous_tel 11 ALIGNMENT 535 Y12-2f09.p1k chr12 160 907 1065045 1065772 F 748 93.05 1344 ambiguous_tel 10 ALIGNMENT 101 Y12-2f09.p1k chr12 237 20 2 216 C 218 88.53 1344 ambiguous_tel 21 ALIGNMENT 506 Y12-2f09.p1k chr15 261 955 1084616 1085302 F 695 92.81 1344 ambiguous_tel 14 ALIGNMENT 0 Y12-2f09.p1k chr08 62 157 556891 556890 F 96 0.00 1344 ambiguous_tel 13 ALIGNMENT 0 Y12-2f09.p1k chr15 62 260 1084616 1084615 F 199 0.00 1344 ambiguous_tel 14 ALIGNMENT 537 Y12-2f09.p1k chr12 973 34 4960 5849 C 940 89.36 1344 ambiguous_tel 1 ALIGNMENT 64 Y12-2f09.p1k chr16 20 114 947964 948062 F 95 91.58 1344 ambiguous_tel 23 ALIGNMENT 0 Y12-2f09.p1k chr16 115 710 948062 948061 F 596 0.00 1344 ambiguous_tel 23 ALIGNMENT 0 Y12-2f09.p1k chr02 255 62 5851 5850 C 194 0.00 1344 ambiguous_tel 15 ALIGNMENT 0 Y12-2f09.p1k chr06 164 62 4783 4782 C 103 0.00 1344 ambiguous_tel 12 ALIGNMENT 440 Y12-2f09.p1k chr02 955 256 5176 5850 C 700 90.29 1344 ambiguous_tel 15 ALIGNMENT 0 Y12-2f09.p1k chr16 62 545 942804 942803 F 484 0.00 1344 ambiguous_tel 17 ALIGNMENT 0 Y12-2f09.p1k chr05 433 62 6339 6338 C 372 0.00 1344 ambiguous_tel 18 ALIGNMENT 0 Y12-2f09.p1k chr16 260 62 6526 6525 C 199 0.00 1344 ambiguous_tel 8 ALIGNMENT 587 Y12-2f09.p1k chr10 994 309 6260 6931 C 686 96.94 1344 ambiguous_tel 4 ALIGNMENT 340 Y12-2f09.p1k chr16 546 994 942804 943238 F 449 94.21 1344 ambiguous_tel 17 ALIGNMENT 497 Y12-2f09.p1k chr08 158 955 556891 557656 F 798 90.60 1344 ambiguous_tel 13 ALIGNMENT 314 Y12-2f09.p1k chr05 907 434 5894 6338 C 474 91.35 1344 ambiguous_tel 18 ALIGNMENT 509 Y12-2f09.p1k chr12 252 955 1071644 1072338 F 704 92.76 1344 ambiguous_tel 16 ALIGNMENT 0 Y12-2f09.p1k chr05 100 710 576866 576865 F 611 0.00 1344 ambiguous_tel 24 ALIGNMENT 492 Y12-2f09.p1k chr06 994 165 3976 4782 C 830 89.64 1344 ambiguous_tel 12 ALIGNMENT 0 Y12-2f09.p1k chr13 215 62 5585 5584 C 154 0.00 1344 ambiguous_tel 11 ALIGNMENT 0 Y12-2f09.p1k chr12 62 159 1065045 1065044 F 98 0.00 1344 ambiguous_tel 10 ALIGNMENT 131 Y12-2f09.p1k chr08 20 260 562314 562556 F 241 90.87 1344 ambiguous_tel 20 ALIGNMENT 0 Y12-2f09.p1k chr09 308 62 6949 6948 C 247 0.00 1344 ambiguous_tel 3 ALIGNMENT 900 Y12-2f09.q1k chr12 1160 40 51544 52682 C 1121 94.47 1348 accept 0 ALIGNMENT 59 Y12-2f09.p1k chr05 20 99 576787 576866 F 80 93.75 1344 ambiguous_tel 24 ALIGNMENT 124 Y12-2f09.p1k chr10 214 19 5 202 C 196 92.35 1344 ambiguous_tel 19 ALIGNMENT 566 Y12-2f09.p1k chr12 973 160 10495 11297 C 814 92.38 1344 ambiguous_tel 5 ALIGNMENT 540 Y12-2f09.p1k chr16 994 261 5797 6525 C 734 93.05 1344 ambiguous_tel 8 ALIGNMENT 583 Y12-2f09.p1k chr14 994 192 5888 6686 C 803 92.90 1344 ambiguous_tel 2 ALIGNMENT 0 Y12-2f09.p1k chr12 159 62 11298 11297 C 98 0.00 1344 ambiguous_tel 5 ALIGNMENT 89 Y12-2f09.p1k chr12 20 167 1071499 1071651 F 148 89.19 1344 ambiguous_tel 16 ALIGNMENT 540 Y12-2f09.p1k chr07 261 994 1084352 1085080 F 734 93.05 1344 ambiguous_tel 7 ALIGNMENT 0 Y12-2f09.p1k chr12 168 251 1071652 1071643 F 84 0.00 1344 ambiguous_tel 16 ALIGNMENT 0 Y12-2f09.p1k chr04 62 157 1525356 1525355 F 96 0.00 1344 ambiguous_tel 9 ALIGNMENT 0 Y12-2f09.p1k chr14 191 62 6687 6686 C 130 0.00 1344 ambiguous_tel 2 ALIGNMENT 587 Y12-2f09.p1k chr09 994 309 6277 6948 C 686 96.94 1344 ambiguous_tel 3 ALIGNMENT 537 Y12-2f09.p1k chr04 158 955 1525356 1526137 F 798 91.73 1344 ambiguous_tel 9 ALIGNMENT 607 Y12-2f09.p1k chr05 261 907 570325 570969 F 647 98.61 1344 ambiguous_tel 6 ALIGNMENT 0 Y12-2f09.p1k chr08 261 710 562556 562555 F 450 0.00 1344 ambiguous_tel 20 ALIGNMENT 0 Y12-2f09.p1k chr10 308 62 6932 6931 C 247 0.00 1344 ambiguous_tel 4 ALIGNMENT 92 Y12-2f09.p1k chr15 20 177 1091126 1091287 F 158 89.24 1344 ambiguous_tel 22 ALIGNMENT 0 Y12-2f09.p1k chr12 710 238 3 2 C 473 0.00 1344 ambiguous_tel 21 ALIGNMENT 970 Y12-2f10.q1k chr10 37 1174 654494 655649 F 1138 95.78 1366 accept 0 ALIGNMENT 965 Y12-2f10.p1k chr10 1187 20 658568 659731 C 1168 95.55 1245 accept 0 ALIGNMENT 0 Y12-2f11.q1k chr10 832 907 197311 197310 F 76 0.00 1316 reject_low 1 ALIGNMENT 0 Y12-2f11.q1k chr04 907 835 410368 410367 C 73 0.00 1316 reject_low 3 ALIGNMENT 0 Y12-2f11.q1k chr06 62 751 204912 204911 F 690 0.00 1316 reject_low 2 ALIGNMENT 71 Y12-2f11.q1k chr12 751 824 656935 657008 F 74 100.00 1316 reject_low 7 ALIGNMENT 0 Y12-2f11.q1k chr12 825 907 657008 657007 F 83 0.00 1316 reject_low 7 ALIGNMENT 74 Y12-2f11.q1k chr06 752 838 204912 204998 F 87 95.40 1316 reject_low 2 ALIGNMENT 951 Y12-2f11.p1k chr08 1132 23 151177 152305 C 1110 96.13 1230 accept 0 ALIGNMENT 72 Y12-2f11.q1k chr13 742 824 768359 768440 F 83 97.59 1316 reject_low 5 ALIGNMENT 73 Y12-2f11.q1k chr07 824 743 774354 774435 C 82 97.56 1316 reject_low 6 ALIGNMENT 0 Y12-2f11.q1k chr16 751 62 856971 856970 C 690 0.00 1316 reject_low 10 ALIGNMENT 0 Y12-2f11.q1k chr06 839 907 204998 204997 F 69 0.00 1316 reject_low 2 ALIGNMENT 80 Y12-2f11.q1k chr11 825 744 219540 219621 C 82 100.00 1316 reject_low 4 ALIGNMENT 0 Y12-2f11.q1k chr13 62 741 768359 768358 F 680 0.00 1316 reject_low 5 ALIGNMENT 0 Y12-2f11.q1k chr07 907 825 774355 774354 C 83 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-2f11.q1k chr10 62 739 197219 197218 F 678 0.00 1316 reject_low 1 ALIGNMENT 0 Y12-2f11.q1k chr11 907 826 219541 219540 C 82 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-2f11.q1k chr13 825 907 768440 768439 F 83 0.00 1316 reject_low 5 ALIGNMENT 139 Y12-2f11.q1k chr08 836 1145 146665 146985 F 310 82.26 1316|3,0 accept 0 ALIGNMENT 0 Y12-2f11.q1k chr11 743 62 219622 219621 C 682 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-2f11.q1k chr13 825 907 321218 321217 F 83 0.00 1316 reject_low 9 ALIGNMENT 0 Y12-2f11.q1k chr11 907 825 517631 517630 C 83 0.00 1316 reject_low 8 ALIGNMENT 0 Y12-2f11.q1k chr08 839 838 146322 146667 F 0 0.00 1316 accept 0 ALIGNMENT 0 Y12-2f11.q1k chr12 62 750 656935 656934 F 689 0.00 1316 reject_low 7 ALIGNMENT 0 Y12-2f11.q1k chr11 751 62 517703 517702 C 690 0.00 1316 reject_low 8 ALIGNMENT 70 Y12-2f11.q1k chr16 824 752 856898 856970 C 73 100.00 1316 reject_low 10 ALIGNMENT 70 Y12-2f11.q1k chr11 824 752 517630 517702 C 73 100.00 1316 reject_low 8 ALIGNMENT 0 Y12-2f11.q1k chr13 62 751 321146 321145 F 690 0.00 1316 reject_low 9 ALIGNMENT 0 Y12-2f11.q1k chr16 907 825 856899 856898 C 83 0.00 1316 reject_low 10 ALIGNMENT 775 Y12-2f11.q1k chr08 35 840 145518 146323 F 806 99.38 1316|0,2 accept 0 ALIGNMENT 75 Y12-2f11.q1k chr04 834 751 410367 410449 C 84 97.62 1316 reject_low 3 ALIGNMENT 0 Y12-2f11.q1k chr07 742 62 774436 774435 C 681 0.00 1316 reject_low 6 ALIGNMENT 80 Y12-2f11.q1k chr10 740 831 197219 197311 F 92 96.74 1316 reject_low 1 ALIGNMENT 0 Y12-2f11.q1k chr04 750 62 410450 410449 C 689 0.00 1316 reject_low 3 ALIGNMENT 70 Y12-2f11.q1k chr13 752 824 321146 321218 F 73 100.00 1316 reject_low 9 ALIGNMENT 877 Y12-2f12.q1k chr13 1055 26 697674 698719 C 1030 96.80 1265 accept 0 ALIGNMENT 994 Y12-2f12.p1k chr13 20 1192 694512 695686 F 1173 95.31 1246 accept 0 ALIGNMENT 963 Y12-2f13.p1k chr04 27 1223 1185748 1186942 F 1197 95.41 1251 accept 0 ALIGNMENT 995 Y12-2f13.q1k chr04 1179 36 1190972 1192128 C 1144 96.94 1276 accept 0 ALIGNMENT 0 Y12-2f15.q1k chr14 838 459 144084 144083 C 380 0.00 1317 reject_low 3 ALIGNMENT 0 Y12-2f15.q1k chr14 396 62 144145 144144 C 335 0.00 1317 reject_low 3 ALIGNMENT 1011 Y12-2f15.p1k chr12 1145 17 462691 463832 C 1129 96.90 1219 accept_chi 1 ALIGNMENT 1011 Y12-2f15.p1k chr12 1145 17 453554 454695 C 1129 96.90 1219 accept_chi 0 ALIGNMENT 905 Y12-2f15.q1k chr12 37 1116 607237 608330 F 1080 95.56 1317 accept_chi 2 ALIGNMENT 57 Y12-2f15.q1k chr14 458 397 144083 144144 C 62 100.00 1317 reject_low 3 ALIGNMENT 682 Y12-2f18.p1k chr14 1075 262 449260 450074 C 814 96.07 1206 accept 0 ALIGNMENT 1007 Y12-2f18.q1k chr14 35 1249 446235 447443 F 1215 95.14 1249 accept 0 ALIGNMENT 83 Y12-2f20.p1k chr07 283 366 876398 876481 F 84 100.00 1192 reject_low 7 ALIGNMENT 0 Y12-2f20.p1k chr03 766 366 151273 151272 C 401 0.00 1192 reject_low 5 ALIGNMENT 75 Y12-2f20.p1k chr06 370 279 226660 226752 C 92 95.65 1192 reject_low 3 ALIGNMENT 75 Y12-2f20.p1k chr04 279 356 1201735 1201812 F 78 98.72 1192 reject_low 14 ALIGNMENT 78 Y12-2f20.p1k chr13 366 283 480611 480693 C 84 98.81 1192 reject_low 12 ALIGNMENT 85 Y12-2f20.p1k chr11 280 364 202641 202725 F 85 100.00 1192 reject_low 6 ALIGNMENT 0 Y12-2f20.p1k chr10 370 766 414966 414965 F 397 0.00 1192 reject_low 9 ALIGNMENT 0 Y12-2f20.p1k chr11 365 766 202725 202724 F 402 0.00 1192 reject_low 6 ALIGNMENT 0 Y12-2f20.p1k chr04 357 766 1201812 1201811 F 410 0.00 1192 reject_low 14 ALIGNMENT 79 Y12-2f20.p1k chr07 283 366 122272 122356 F 84 98.81 1192 reject_low 11 ALIGNMENT 0 Y12-2f20.p1k chr06 766 371 226661 226660 C 396 0.00 1192 reject_low 3 ALIGNMENT 0 Y12-2f20.p1k chr07 367 766 876481 876480 F 400 0.00 1192 reject_low 7 ALIGNMENT 81 Y12-2f20.p1k chr07 365 279 185711 185797 C 87 97.70 1192 reject_low 8 ALIGNMENT 75 Y12-2f20.p1k chr09 364 279 300219 300303 C 86 96.51 1192 reject_low 13 ALIGNMENT 74 Y12-2f20.p1k chr10 283 369 414880 414966 F 87 95.40 1192 reject_low 9 ALIGNMENT 82 Y12-2f20.p1k chr04 367 279 1352445 1352533 C 89 97.75 1192 reject_low 4 ALIGNMENT 900 Y12-2f20.q1k chr15 1210 36 763143 764310 C 1175 93.36 1293 accept_chi 0 ALIGNMENT 0 Y12-2f20.p1k chr13 766 367 480612 480611 C 400 0.00 1192 reject_low 12 ALIGNMENT 84 Y12-2f20.p1k chr03 365 279 151272 151358 C 87 98.85 1192 reject_low 5 ALIGNMENT 81 Y12-2f20.p1k chr05 364 283 435740 435821 C 82 100.00 1192 reject_low 10 ALIGNMENT 721 Y12-2f20.p1k chr05 1151 267 134639 135514 C 885 95.25 1192 accept_chi 1 ALIGNMENT 0 Y12-2f20.p1k chr07 367 766 122356 122355 F 400 0.00 1192 reject_low 11 ALIGNMENT 85 Y12-2f20.p1k chr16 278 365 582053 582140 F 88 98.86 1192 reject_low 2 ALIGNMENT 0 Y12-2f20.p1k chr09 766 365 300220 300219 C 402 0.00 1192 reject_low 13 ALIGNMENT 0 Y12-2f20.p1k chr16 366 766 582140 582139 F 401 0.00 1192 reject_low 2 ALIGNMENT 0 Y12-2f20.p1k chr04 766 368 1352446 1352445 C 399 0.00 1192 reject_low 4 ALIGNMENT 0 Y12-2f20.p1k chr07 766 366 185712 185711 C 401 0.00 1192 reject_low 8 ALIGNMENT 0 Y12-2f20.p1k chr05 766 365 435741 435740 C 402 0.00 1192 reject_low 10 ALIGNMENT 899 Y12-2f22.q1k chr08 1090 29 119543 120593 C 1062 96.05 1208 accept 0 ALIGNMENT 759 Y12-2f22.p1k chr08 112 1174 114798 115846 F 1063 92.57 1174 accept 0 ALIGNMENT 973 Y12-2f23.q1k chr02 39 1183 319960 321096 F 1145 96.51 1183 accept 0 ALIGNMENT 808 Y12-2f23.p1k chr02 1157 84 324471 325529 C 1074 93.20 1157 accept 0 ALIGNMENT 972 Y12-2f24.q1k chr13 37 1155 787349 788454 F 1119 97.41 1200 accept 0 ALIGNMENT 424 Y12-2g01.p1k chr12 891 269 463364 463972 C 623 91.17 1274 accept 0 ALIGNMENT 0 Y12-2g01.q1k chr06 845 62 31730 31729 C 784 0.00 1335 reject_low 3 ALIGNMENT 965 Y12-2g01.q1k chr12 38 1209 467636 468807 F 1172 95.90 1335 reject_low 1 ALIGNMENT 424 Y12-2g01.p1k chr12 891 269 454227 454835 C 623 91.17 1274 reject_low 2 ALIGNMENT 974 Y12-2g01.q1k chr12 38 1226 458499 459688 F 1189 95.71 1335 accept 0 ALIGNMENT 88 Y12-2g01.q1k chr06 953 846 31622 31729 C 108 96.30 1335 reject_low 3 ALIGNMENT 671 Y12-2g02.q1k chr04 5 873 1069678 1070533 F 869 94.59 1218 accept 0 ALIGNMENT 781 Y12-2g03.q1k chr05 30 953 340783 341703 F 924 95.78 1461 accept 0 ALIGNMENT 754 Y12-2g05.q1k chr02 1246 34 562994 564199 C 1213 88.54 1393 accept 0 ALIGNMENT 859 Y12-2g06.q1k chr01 37 1146 4827 5946 F 1110 93.60 1306 ambiguous_tel 1 ALIGNMENT 931 Y12-2g06.p1k chr02 20 1197 761703 762891 F 1178 94.23 1209 accept 0 ALIGNMENT 1004 Y12-2g07.q1k chr08 1283 36 523751 525003 C 1248 94.39 1378 accept 0 ALIGNMENT 970 Y12-2g07.p1k chr08 18 1218 519697 520906 F 1201 95.42 1223 accept 0 ALIGNMENT 0 Y12-2g10.q1k chr04 613 877 1360789 1360788 F 265 0.00 1268 reject_low 1 ALIGNMENT 327 Y12-2g10.q1k chr04 215 612 1360392 1360789 F 398 94.47 1268 reject_low 1 ALIGNMENT 0 Y12-2g10.q1k chr04 62 214 1360392 1360391 F 153 0.00 1268 reject_low 1 ALIGNMENT 931 Y12-2g10.p1k chr13 17 1114 218636 219725 F 1098 95.90 1275 accept 0 ALIGNMENT 945 Y12-2g10.q1k chr13 1098 37 222489 223561 C 1062 97.74 1268 accept 0 ALIGNMENT 1014 Y12-2g11.p1k chr06 17 1170 197212 198370 F 1154 96.62 1234 accept 0 ALIGNMENT 922 Y12-2g11.q1k chr06 1097 37 200724 201798 C 1061 96.89 1334 accept 0 ALIGNMENT 963 Y12-2g12.p1k chr11 23 1228 637848 639062 F 1206 94.86 1230 accept 0 ALIGNMENT 1014 Y12-2g12.q1k chr11 1316 38 641481 642774 C 1279 94.45 1339 accept 0 ALIGNMENT 286 Y12-2g13.q1k chr05 329 770 106007 106445 F 442 88.91 1342 accept 0 ALIGNMENT 936 Y12-2g13.p1k chr05 1087 26 109265 110334 C 1062 96.61 1203 accept 0 ALIGNMENT 0 Y12-2g14.p1k chr08 62 658 212024 212023 F 597 0.00 1251 reject_low 2,3 ALIGNMENT 82 Y12-2g14.q1k chr08 1226 1065 214083 214255 C 162 86.42 1326 reject_low 3 ALIGNMENT 128 Y12-2g14.p1k chr08 894 1179 214265 214540 F 286 85.66 1251 reject_bad_break 0 ALIGNMENT 0 Y12-2g14.q1k chr08 939 508 212159 212158 C 432 0.00 1326 reject_low 2 ALIGNMENT 588 Y12-2g14.p1k chr08 18 661 212551 213197 F 644 98.29 1251 reject_bad_break 0 ALIGNMENT 0 Y12-2g14.p1k chr08 662 819 215195 215194 F 158 0.00 1251 reject_low 1 ALIGNMENT 412 Y12-2g14.q1k chr08 507 33 212158 212639 C 475 97.47 1326 reject_low 2 ALIGNMENT 0 Y12-2g14.q1k chr08 507 62 216809 216808 C 446 0.00 1326 reject_bad_break 0 reject_low 1 ALIGNMENT 320 Y12-2g14.p1k chr08 659 1179 212024 212542 F 521 90.60 1251 reject_low 2,3 ALIGNMENT 0 Y12-2g14.p1k chr08 662 893 213198 214264 F 232 0.00 1251 reject_bad_break 0 ALIGNMENT 0 Y12-2g14.q1k chr08 1064 406 214256 214264 C 659 0.00 1326 reject_low 3 ALIGNMENT 338 Y12-2g14.q1k chr08 405 33 214265 214637 C 373 98.66 1326 reject_low 3 ALIGNMENT 573 Y12-2g14.q1k chr08 1226 508 216081 216808 C 719 94.71 1326 reject_bad_break 0 reject_low 1 ALIGNMENT 588 Y12-2g14.p1k chr08 18 661 214549 215195 F 644 98.29 1251 reject_low 1 ALIGNMENT 974 Y12-2g15.p1k chr04 1153 24 563807 564945 C 1130 96.37 1212 accept 0 ALIGNMENT 895 Y12-2g15.q1k chr04 23 1076 559603 560675 F 1054 96.20 1287 accept 0 ALIGNMENT 1034 Y12-2g17.q1k chr07 35 1271 48093 49339 F 1237 95.55 1369 accept_chi 0 ALIGNMENT 0 Y12-2g17.p1k chr15 910 392 63080 63079 C 519 0.00 1263 reject_low 6 ALIGNMENT 0 Y12-2g17.p1k chr06 877 392 224612 224611 C 486 0.00 1263 reject_low 3 ALIGNMENT 23 Y12-2g17.p1k chr04 942 890 1038648 1038700 C 53 84.91 1263 reject_low 4 ALIGNMENT 0 Y12-2g17.p1k chr05 910 392 309025 309024 C 519 0.00 1263 reject_low 7 ALIGNMENT 29 Y12-2g17.p1k chr08 942 878 365372 365436 C 65 86.15 1263 reject_low 2 ALIGNMENT 24 Y12-2g17.p1k chr15 937 911 63053 63079 C 27 100.00 1263 reject_low 6 ALIGNMENT 22 Y12-2g17.p1k chr05 935 911 309000 309024 C 25 100.00 1263 reject_low 7 ALIGNMENT 0 Y12-2g17.p1k chr05 884 392 79261 79260 C 493 0.00 1263 reject_low 5 ALIGNMENT 24 Y12-2g17.p1k chr05 928 885 79217 79260 C 44 90.91 1263 reject_low 5 ALIGNMENT 24 Y12-2g17.p1k chr06 934 878 224555 224611 C 57 85.96 1263 reject_low 3 ALIGNMENT 0 Y12-2g17.p1k chr08 877 392 365437 365436 C 486 0.00 1263 reject_low 2 ALIGNMENT 0 Y12-2g17.p1k chr04 889 392 1038701 1038700 C 498 0.00 1263 reject_low 4 ALIGNMENT 638 Y12-2g17.p1k chr13 270 1074 353550 354351 F 805 94.53 1263 accept_chi 1 ALIGNMENT 742 Y12-2g19.p1k chr12 1183 257 71208 72148 C 927 94.61 1188 accept 0 ALIGNMENT 1021 Y12-2g19.q1k chr12 33 1296 68096 69367 F 1264 94.86 1306 accept 0 ALIGNMENT 1015 Y12-2g20.q1k chr11 36 1239 247748 248947 F 1204 95.51 1242 accept 0 ALIGNMENT 867 Y12-2g20.p1k chr11 1153 24 250678 251790 C 1130 93.81 1221 accept 0 ALIGNMENT 961 Y12-2g21.q1k chr04 36 1161 919990 921123 F 1126 96.36 1282 accept 0 ALIGNMENT 892 Y12-2g21.p1k chr04 1168 63 924962 926057 C 1106 94.76 1168 accept 0 ALIGNMENT 978 Y12-2g22.q1k chr04 1189 34 572870 574017 C 1156 96.54 1193 accept 0 ALIGNMENT 0 Y12-2g22.p1k chr09 800 619 430455 430454 C 182 0.00 1179 reject_low 2 ALIGNMENT 144 Y12-2g22.p1k chr09 618 275 430454 430801 C 344 81.69 1179 reject_low 2 ALIGNMENT 896 Y12-2g22.p1k chr07 35 1176 9341 10476 F 1142 94.13 1179 ambiguous_tel 1 ALIGNMENT 0 Y12-2g22.p1k chr09 274 182 430802 430801 C 93 0.00 1179 reject_low 2 ALIGNMENT 842 Y12-2g23.p1k chr07 1116 86 206608 207640 C 1031 94.96 1132 accept 0 ALIGNMENT 892 Y12-2g23.q1k chr07 27 1187 203653 204829 F 1161 94.23 1247 accept 0 ALIGNMENT 564 Y12-2g24.p1k chr09 422 1059 314025 314656 F 638 97.65 1175 reject_bad_break 0 ALIGNMENT 679 Y12-2g24.q1k chr06 143 912 220496 221265 F 770 96.10 1195 reject_low 1 ALIGNMENT 973 Y12-2g24.q1k chr09 1178 32 316903 318040 C 1147 96.08 1195 reject_bad_break 0 ALIGNMENT 0 Y12-2g24.p1k chr09 385 421 313988 314024 F 37 0.00 1175 reject_bad_break 0 ALIGNMENT 0 Y12-2g24.q1k chr06 62 142 220496 220495 F 81 0.00 1195 reject_low 1 ALIGNMENT 21 Y12-2g24.p1k chr09 321 384 313924 313987 F 64 78.12 1175 reject_bad_break 0 ALIGNMENT 1031 Y12-2h01.q1k chr10 1254 31 452004 453229 C 1224 95.34 1256 accept 0 ALIGNMENT 0 Y12-2h02.q1k chr03 433 539 124467 124466 F 107 0.00 1459 ambiguous_trans_ua 29 ALIGNMENT 33 Y12-2h02.q1k chr08 473 567 91772 91866 F 95 82.11 1459 ambiguous_trans_ua 34 ALIGNMENT 31 Y12-2h02.q1k chr15 567 517 665043 665093 C 51 90.20 1459 ambiguous_trans_ua 42 ALIGNMENT 0 Y12-2h02.q1k chr09 539 428 246218 246217 C 112 0.00 1459 ambiguous_trans_ua 14 ALIGNMENT 74 Y12-2h02.q1k chr08 760 640 91639 91757 C 121 89.26 1459 ambiguous_trans 6 ALIGNMENT 0 Y12-2h02.q1k chr07 539 429 811452 811451 C 111 0.00 1459 ambiguous_trans 24 ALIGNMENT 0 Y12-2h02.q1k chr04 429 539 519644 519643 F 111 0.00 1459 ambiguous_trans 18 ALIGNMENT 0 Y12-2h02.q1k chr14 468 428 519493 524729 C 41 0.00 1459 ambiguous_trans 56 ALIGNMENT 272 Y12-2h02.q1k chr07 428 105 811451 811773 C 324 97.22 1459 ambiguous_trans 24 ALIGNMENT 95 Y12-2h02.q1k chr03 103 432 124139 124467 F 330 79.70 1459 ambiguous_trans_ua 29 ALIGNMENT 0 Y12-2h02.q1k chr07 229 539 817532 817531 F 311 0.00 1459 ambiguous_trans 48 ALIGNMENT 0 Y12-2h02.q1k chr07 516 92 817358 817357 C 425 0.00 1459 ambiguous_trans 44 ALIGNMENT 26 Y12-2h02.q1k chr04 355 428 513514 513587 F 74 81.08 1459 ambiguous_trans_ua 62 ALIGNMENT 271 Y12-2h02.q1k chr06 427 105 143535 143856 C 323 97.21 1459 ambiguous_trans 58 ALIGNMENT 271 Y12-2h02.q1k chr07 427 118 817079 817387 C 310 98.39 1459 ambiguous_trans 59 ALIGNMENT 30 Y12-2h02.q1k chr07 567 517 817308 817357 C 51 90.20 1459 ambiguous_trans 44 ALIGNMENT 101 Y12-2h02.q1k chr03 437 105 151509 151838 C 333 80.78 1459 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-2h02.q1k chr05 92 516 431539 431538 F 425 0.00 1459 ambiguous_trans_ua 49 ALIGNMENT 0 Y12-2h02.q1k chr08 428 539 92095 92094 F 112 0.00 1459 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-2h02.q1k chr03 473 92 151839 151838 C 382 0.00 1459 ambiguous_trans_ua 36 ALIGNMENT 0 Y12-2h02.q1k chr15 92 516 704117 704116 F 425 0.00 1459 ambiguous_trans 50 ALIGNMENT 61 Y12-2h02.q1k chr03 146 428 142798 143078 F 283 77.03 1459 ambiguous_trans_ua 47 ALIGNMENT 46 Y12-2h02.q1k chr15 724 639 710025 710109 C 86 87.21 1459 ambiguous_trans_ua 9 ALIGNMENT 278 Y12-2h02.q1k chr12 428 95 941188 941520 C 334 96.71 1459 ambiguous_trans 21 ALIGNMENT 0 Y12-2h02.q1k chr01 428 539 166163 166162 F 112 0.00 1459 ambiguous_trans 27 ALIGNMENT 30 Y12-2h02.q1k chr10 567 517 538246 538295 C 51 90.20 1459 ambiguous_trans_ua 45 ALIGNMENT 0 Y12-2h02.q1k chr14 92 264 561500 561499 F 173 0.00 1459 ambiguous_trans_ua 54 ALIGNMENT 33 Y12-2h02.q1k chr14 638 568 524993 525063 C 71 84.51 1459 ambiguous_trans 4 ALIGNMENT 33 Y12-2h02.q1k chr01 568 638 160239 160309 F 71 84.51 1459 ambiguous_trans 1 ALIGNMENT 38 Y12-2h02.q1k chr01 469 567 165832 165931 F 99 82.83 1459 ambiguous_trans 61 ALIGNMENT 0 Y12-2h02.q1k chr14 567 568 519498 524958 C 0 0.00 1459 ambiguous_trans 8 ALIGNMENT 0 Y12-2h02.q1k chr10 516 92 538296 538295 C 425 0.00 1459 ambiguous_trans_ua 45 ALIGNMENT 294 Y12-2h02.q1k chr13 95 427 168349 168681 F 333 98.20 1459 ambiguous_trans_ua 17 ALIGNMENT 0 Y12-2h02.q1k chr15 638 92 710110 710109 C 547 0.00 1459 ambiguous_trans_ua 9 ALIGNMENT 0 Y12-2h02.q1k chr10 92 276 537832 537831 F 185 0.00 1459 ambiguous_trans_ua 53 ALIGNMENT 0 Y12-2h02.q1k chr04 429 516 513588 513737 F 88 0.00 1459 ambiguous_trans_ua 62 ALIGNMENT 0 Y12-2h02.q1k chr03 92 145 142798 142797 F 54 0.00 1459 ambiguous_trans_ua 47 ALIGNMENT 0 Y12-2h02.q1k chr07 117 92 817388 817387 C 26 0.00 1459 ambiguous_trans 59 ALIGNMENT 0 Y12-2h02.q1k chr06 539 425 137659 137658 C 115 0.00 1459 ambiguous_trans 63 ALIGNMENT 0 Y12-2h02.q1k chr10 639 374 203690 204035 C 266 0.00 1459 ambiguous_trans_ua 23 ALIGNMENT 271 Y12-2h02.q1k chr06 427 105 137908 138229 C 323 97.21 1459 ambiguous_trans 60 ALIGNMENT 22 Y12-2h02.q1k chr10 567 543 204209 204233 C 25 96.00 1459 ambiguous_trans_ua 52 ALIGNMENT 0 Y12-2h02.q1k chr12 92 470 731677 731676 F 379 0.00 1459 ambiguous_trans_ua 35 ALIGNMENT 0 Y12-2h02.q1k chr12 539 429 941189 941188 C 111 0.00 1459 ambiguous_trans 21 ALIGNMENT 280 Y12-2h02.q1k chr04 105 427 513695 514016 F 323 98.14 1459 ambiguous_trans 57 ALIGNMENT 0 Y12-2h02.q1k chr15 516 92 665094 665093 C 425 0.00 1459 ambiguous_trans_ua 42 ALIGNMENT 34 Y12-2h02.q1k chr03 469 559 124136 124227 F 91 82.42 1459 ambiguous_trans_ua 32 ALIGNMENT 300 Y12-2h02.q1k chr08 95 427 389180 389512 F 333 98.80 1459 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-2h02.q1k chr14 567 92 525064 525063 C 476 0.00 1459 ambiguous_trans 4 ALIGNMENT 297 Y12-2h02.q1k chr15 95 427 709692 710024 F 333 98.50 1459 ambiguous_trans 15 ALIGNMENT 0 Y12-2h02.q1k chr14 372 539 561606 561605 F 168 0.00 1459 ambiguous_trans_ua 54 ALIGNMENT 260 Y12-2h02.q1k chr14 427 103 524730 525055 C 325 95.69 1459 ambiguous_trans 56 ALIGNMENT 0 Y12-2h02.q1k chr05 430 539 431820 431819 F 110 0.00 1459 ambiguous_trans_ua 10 ALIGNMENT 0 Y12-2h02.q1k chr07 92 481 817416 817415 F 390 0.00 1459 ambiguous_trans 33 ALIGNMENT 0 Y12-2h02.q1k chr03 92 567 168595 168594 F 476 0.00 1459 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-2h02.q1k chr04 428 516 514017 519364 F 89 0.00 1459 ambiguous_trans 57 ALIGNMENT 0 Y12-2h02.q1k chr05 539 429 62142 62141 C 111 0.00 1459 ambiguous_trans_ua 13 ALIGNMENT 33 Y12-2h02.q1k chr06 154 104 143877 143928 C 51 92.16 1459 ambiguous_trans 63 ALIGNMENT 287 Y12-2h02.q1k chr12 104 427 731679 732002 F 324 98.46 1459 ambiguous_trans_ua 22 ALIGNMENT 28 Y12-2h02.q1k chr15 517 567 709745 709795 F 51 88.24 1459 ambiguous_trans 55 ALIGNMENT 42 Y12-2h02.q1k chr10 277 394 537832 537948 F 118 81.36 1459 ambiguous_trans_ua 53 ALIGNMENT 0 Y12-2h02.q1k chr06 516 92 143814 143813 C 425 0.00 1459 ambiguous_trans 43 ALIGNMENT 30 Y12-2h02.q1k chr12 567 517 941418 941467 C 51 90.20 1459 ambiguous_trans 46 ALIGNMENT 0 Y12-2h02.q1k chr03 92 567 124131 124130 F 476 0.00 1459 ambiguous_trans_ua 2 ALIGNMENT 297 Y12-2h02.q1k chr09 427 95 246217 246549 C 333 98.50 1459 ambiguous_trans_ua 14 ALIGNMENT 0 Y12-2h02.q1k chr01 92 567 160239 160238 F 476 0.00 1459 ambiguous_trans 1 ALIGNMENT 35 Y12-2h02.q1k chr14 567 469 519393 519492 C 99 81.82 1459 ambiguous_trans 56 ALIGNMENT 0 Y12-2h02.q1k chr14 168 539 562106 562105 F 372 0.00 1459 ambiguous_trans_ua 30 ALIGNMENT 201 Y12-2h02.q1k chr01 103 427 165835 166163 F 325 89.85 1459 ambiguous_trans 27 ALIGNMENT 33 Y12-2h02.q1k chr01 568 638 165827 165897 F 71 84.51 1459 ambiguous_trans 7 ALIGNMENT 0 Y12-2h02.q1k chr12 428 539 732002 732001 F 112 0.00 1459 ambiguous_trans_ua 22 ALIGNMENT 0 Y12-2h02.q1k chr14 468 92 525059 525058 C 377 0.00 1459 ambiguous_trans 8 ALIGNMENT 297 Y12-2h02.q1k chr15 95 427 704064 704396 F 333 98.50 1459 ambiguous_trans 55 ALIGNMENT 36 Y12-2h02.q1k chr07 482 567 817416 817502 F 86 83.72 1459 ambiguous_trans 33 ALIGNMENT 0 Y12-2h02.q1k chr06 528 428 137908 137907 C 101 0.00 1459 ambiguous_trans 60 ALIGNMENT 0 Y12-2h02.q1k chr03 92 468 124136 124135 F 377 0.00 1459 ambiguous_trans_ua 32 ALIGNMENT 0 Y12-2h02.q1k chr07 516 428 811731 817078 C 89 0.00 1459 ambiguous_trans 59 ALIGNMENT 0 Y12-2h02.q1k chr10 92 516 203757 203756 F 425 0.00 1459 ambiguous_trans_ua 51 ALIGNMENT 0 Y12-2h02.q1k chr03 92 468 168600 168599 F 377 0.00 1459 ambiguous_trans_ua 31 ALIGNMENT 30 Y12-2h02.q1k chr06 567 517 143764 143813 C 51 90.20 1459 ambiguous_trans 43 ALIGNMENT 290 Y12-2h02.q1k chr04 95 428 519312 519644 F 334 97.90 1459 ambiguous_trans 18 ALIGNMENT 32 Y12-2h02.q1k chr12 471 567 731677 731773 F 97 80.41 1459 ambiguous_trans_ua 35 ALIGNMENT 0 Y12-2h02.q1k chr08 428 539 389512 389511 F 112 0.00 1459 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-2h02.q1k chr01 428 468 160576 165831 F 41 0.00 1459 ambiguous_trans 61 ALIGNMENT 295 Y12-2h02.q1k chr15 428 95 664813 665146 C 334 98.20 1459 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-2h02.q1k chr13 92 516 168402 168401 F 425 0.00 1459 ambiguous_trans_ua 41 ALIGNMENT 298 Y12-2h02.q1k chr05 428 95 62141 62474 C 334 98.50 1459 ambiguous_trans_ua 13 ALIGNMENT 59 Y12-2h02.q1k chr07 115 228 817418 817532 F 114 85.96 1459 ambiguous_trans 48 ALIGNMENT 0 Y12-2h02.q1k chr10 539 431 538015 538014 C 109 0.00 1459 ambiguous_trans_ua 20 ALIGNMENT 0 Y12-2h02.q1k chr10 170 92 204237 204236 C 79 0.00 1459 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-2h02.q1k chr15 428 516 704397 709744 F 89 0.00 1459 ambiguous_trans 55 ALIGNMENT 78 Y12-2h02.q1k chr14 760 639 561860 561979 C 122 90.16 1459 ambiguous_trans_ua 5 ALIGNMENT 0 Y12-2h02.q1k chr06 516 428 138187 143534 C 89 0.00 1459 ambiguous_trans 58 ALIGNMENT 0 Y12-2h02.q1k chr04 92 354 513514 513513 F 263 0.00 1459 ambiguous_trans_ua 62 ALIGNMENT 289 Y12-2h02.q1k chr08 94 427 91762 92095 F 334 97.60 1459 ambiguous_trans_ua 12 ALIGNMENT 27 Y12-2h02.q1k chr10 517 567 203757 203806 F 51 88.24 1459 ambiguous_trans_ua 51 ALIGNMENT 30 Y12-2h02.q1k chr04 517 567 513738 513787 F 51 90.20 1459 ambiguous_trans_ua 62 ALIGNMENT 74 Y12-2h02.q1k chr10 760 640 203571 203689 C 121 89.26 1459 ambiguous_trans_ua 23 ALIGNMENT 57 Y12-2h02.q1k chr10 373 171 204036 204236 C 203 80.30 1459 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-2h02.q1k chr08 92 516 389233 389232 F 425 0.00 1459 ambiguous_trans_ua 40 ALIGNMENT 27 Y12-2h02.q1k chr04 517 567 519365 519414 F 51 88.24 1459 ambiguous_trans 57 ALIGNMENT 0 Y12-2h02.q1k chr03 539 395 149514 149513 C 145 0.00 1459 ambiguous_trans_ua 38 ALIGNMENT 75 Y12-2h02.q1k chr03 394 116 149513 149786 C 279 79.21 1459 ambiguous_trans_ua 38 ALIGNMENT 277 Y12-2h02.q1k chr10 430 105 538014 538338 C 326 97.55 1459 ambiguous_trans_ua 20 ALIGNMENT 31 Y12-2h02.q1k chr13 517 567 168402 168452 F 51 90.20 1459 ambiguous_trans_ua 41 ALIGNMENT 0 Y12-2h02.q1k chr03 429 539 143078 143077 F 111 0.00 1459 ambiguous_trans_ua 47 ALIGNMENT 296 Y12-2h02.q1k chr05 95 429 431486 431820 F 335 98.21 1459 ambiguous_trans_ua 10 ALIGNMENT 33 Y12-2h02.q1k chr03 568 638 124131 124201 F 71 84.51 1459 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-2h02.q1k chr15 539 429 664814 664813 C 111 0.00 1459 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-2h02.q1k chr03 428 539 168928 168927 F 112 0.00 1459 ambiguous_trans_ua 25 ALIGNMENT 30 Y12-2h02.q1k chr06 567 517 138137 138186 C 51 90.20 1459 ambiguous_trans 58 ALIGNMENT 25 Y12-2h02.q1k chr14 265 371 561500 561606 F 107 79.44 1459 ambiguous_trans_ua 54 ALIGNMENT 0 Y12-2h02.q1k chr06 164 155 137903 143876 C 10 0.00 1459 ambiguous_trans 63 ALIGNMENT 0 Y12-2h02.q1k chr09 470 92 246543 246542 C 379 0.00 1459 ambiguous_trans_ua 37 ALIGNMENT 35 Y12-2h02.q1k chr03 469 567 168600 168699 F 99 81.82 1459 ambiguous_trans_ua 31 ALIGNMENT 22 Y12-2h02.q1k chr06 567 529 137869 137907 C 39 87.18 1459 ambiguous_trans 60 ALIGNMENT 51 Y12-2h02.q1k chr06 424 165 137658 137902 C 260 78.46 1459 ambiguous_trans 63 ALIGNMENT 28 Y12-2h02.q1k chr15 517 567 704117 704167 F 51 88.24 1459 ambiguous_trans 50 ALIGNMENT 0 Y12-2h02.q1k chr08 639 92 91758 91757 C 548 0.00 1459 ambiguous_trans 6 ALIGNMENT 0 Y12-2h02.q1k chr12 516 92 941468 941467 C 425 0.00 1459 ambiguous_trans 46 ALIGNMENT 31 Y12-2h02.q1k chr05 567 517 62371 62421 C 51 90.20 1459 ambiguous_trans_ua 39 ALIGNMENT 261 Y12-2h02.q1k chr14 428 103 519163 519489 C 326 95.71 1459 ambiguous_trans 26 ALIGNMENT 0 Y12-2h02.q1k chr13 428 539 168681 168680 F 112 0.00 1459 ambiguous_trans_ua 17 ALIGNMENT 35 Y12-2h02.q1k chr14 567 469 524959 525058 C 99 81.82 1459 ambiguous_trans 8 ALIGNMENT 31 Y12-2h02.q1k chr03 567 474 151744 151838 C 94 80.85 1459 ambiguous_trans_ua 36 ALIGNMENT 44 Y12-2h02.q1k chr14 91 167 562030 562106 F 77 88.31 1459 ambiguous_trans_ua 30 ALIGNMENT 0 Y12-2h02.q1k chr05 516 92 62422 62421 C 425 0.00 1459 ambiguous_trans_ua 39 ALIGNMENT 0 Y12-2h02.q1k chr10 542 92 204234 204233 C 451 0.00 1459 ambiguous_trans_ua 52 ALIGNMENT 266 Y12-2h02.q1k chr03 103 427 168603 168928 F 325 96.31 1459 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-2h02.q1k chr10 395 539 537948 537947 F 145 0.00 1459 ambiguous_trans_ua 53 ALIGNMENT 0 Y12-2h02.q1k chr14 539 429 519164 519163 C 111 0.00 1459 ambiguous_trans 26 ALIGNMENT 0 Y12-2h02.q1k chr03 539 438 151510 151509 C 102 0.00 1459 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-2h02.q1k chr10 429 539 204036 204035 F 111 0.00 1459 ambiguous_trans_ua 19 ALIGNMENT 201 Y12-2h02.q1k chr01 103 427 160247 160575 F 325 89.85 1459 ambiguous_trans 61 ALIGNMENT 33 Y12-2h02.q1k chr03 568 638 168595 168665 F 71 84.51 1459 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-2h02.q1k chr08 92 472 91772 91771 F 381 0.00 1459 ambiguous_trans_ua 34 ALIGNMENT 0 Y12-2h02.q1k chr15 428 539 710024 710023 F 112 0.00 1459 ambiguous_trans 15 ALIGNMENT 29 Y12-2h02.q1k chr09 567 471 246446 246542 C 97 79.38 1459 ambiguous_trans_ua 37 ALIGNMENT 0 Y12-2h02.q1k chr03 115 92 149787 149786 C 24 0.00 1459 ambiguous_trans_ua 38 ALIGNMENT 38 Y12-2h02.q1k chr01 469 567 160244 160343 F 99 82.83 1459 ambiguous_trans 7 ALIGNMENT 0 Y12-2h02.q1k chr07 92 114 817418 817417 F 23 0.00 1459 ambiguous_trans 48 ALIGNMENT 0 Y12-2h02.q1k chr14 638 92 561980 561979 C 547 0.00 1459 ambiguous_trans_ua 5 ALIGNMENT 30 Y12-2h02.q1k chr07 567 517 811681 811730 C 51 90.20 1459 ambiguous_trans 59 ALIGNMENT 287 Y12-2h02.q1k chr10 95 428 203704 204036 F 334 97.60 1459 ambiguous_trans_ua 19 ALIGNMENT 33 Y12-2h02.q1k chr14 638 568 519427 519497 C 71 84.51 1459 ambiguous_trans 8 ALIGNMENT 152 Y12-2h02.p1k chr03 381 810 292354 292800 F 430 82.79 1232 accept 0 ALIGNMENT 0 Y12-2h02.q1k chr01 568 567 160344 165826 F 0 0.00 1459 ambiguous_trans 7 ALIGNMENT 28 Y12-2h02.q1k chr05 517 567 431539 431589 F 51 88.24 1459 ambiguous_trans_ua 49 ALIGNMENT 31 Y12-2h02.q1k chr08 517 567 389233 389283 F 51 90.20 1459 ambiguous_trans_ua 40 ALIGNMENT 0 Y12-2h02.q1k chr01 92 468 160244 160243 F 377 0.00 1459 ambiguous_trans 7 ALIGNMENT 628 Y12-2h04.q1k chr04 869 42 1256694 1257519 C 828 93.12 1453 accept 0 ALIGNMENT 0 Y12-2h04.q1k chr15 489 62 594426 594425 C 428 0.00 1453 reject_low 1 ALIGNMENT 61 Y12-2h04.q1k chr15 562 490 594353 594425 C 73 94.52 1453 reject_low 1 ALIGNMENT 0 Y12-2h04.q1k chr15 583 563 594354 594353 C 21 0.00 1453 reject_low 1 ALIGNMENT 384 Y12-2h04.p1k chr04 382 1135 1251938 1252663 F 754 86.74 1292 accept 0 ALIGNMENT 540 Y12-2h05.p1k chr10 327 1044 251127 251848 F 718 92.90 1217 accept 0 ALIGNMENT 883 Y12-2h05.q1k chr10 1080 28 253580 254632 C 1053 95.54 1321 accept 0 ALIGNMENT 788 Y12-2h07.p1k chr12 1183 266 619722 620638 C 918 96.73 1232 accept 0 ALIGNMENT 1015 Y12-2h07.q1k chr12 31 1205 616559 617748 F 1175 96.51 1268 accept 0 ALIGNMENT 941 Y12-2h08.q1k chr15 28 1056 567221 568259 F 1029 98.25 1248 accept 0 ALIGNMENT 959 Y12-2h08.p1k chr15 1210 24 571931 573103 C 1187 95.45 1240 accept 0 ALIGNMENT 989 Y12-2h09.p1k chr04 19 1222 564429 565650 F 1204 95.27 1242 accept 0 ALIGNMENT 972 Y12-2h09.q1k chr04 1169 38 567189 568336 C 1132 96.47 1296 accept 0 ALIGNMENT 596 Y12-2h10.q1k chr03 374 1075 12239 12942 F 702 95.73 1277 reject_low 2 ALIGNMENT 909 Y12-2h10.p1k chr03 1236 22 295864 297087 C 1215 93.99 1251 accept 0 ALIGNMENT 0 Y12-2h10.q1k chr03 62 373 12239 12238 F 312 0.00 1277 reject_low 2 ALIGNMENT 603 Y12-2h10.q1k chr03 374 1075 199396 200097 F 702 96.01 1277 reject_low 1 ALIGNMENT 0 Y12-2h10.q1k chr03 62 373 199396 199395 F 312 0.00 1277 reject_low 1 ALIGNMENT 923 Y12-2h10.q1k chr03 37 1137 292694 293800 F 1101 95.73 1277 accept 0 ALIGNMENT 173 Y12-2h11.q1k chr04 39 639 559473 560067 F 601 78.04 1468 accept 0 ALIGNMENT 969 Y12-2h12.p1k chr05 1134 23 414321 415447 C 1112 96.85 1210 accept 0 ALIGNMENT 990 Y12-2h12.q1k chr05 41 1155 409701 410820 F 1115 96.86 1324 accept 0 ALIGNMENT 0 Y12-2h13.q1k chr10 62 119 721361 721360 F 58 0.00 1301 reject_low 1 ALIGNMENT 0 Y12-2h13.q1k chr10 140 844 721380 721379 F 705 0.00 1301 reject_low 1 ALIGNMENT 992 Y12-2h13.q1k chr10 1260 34 720226 721466 C 1227 94.62 1301 accept 0 ALIGNMENT 20 Y12-2h13.q1k chr10 120 139 721361 721380 F 20 100.00 1301 reject_low 1 ALIGNMENT 857 Y12-2h13.p1k chr10 19 1159 716477 717616 F 1141 93.43 1232 accept 0 ALIGNMENT 996 Y12-2h14.p1k chr15 1179 17 358739 359909 C 1163 96.73 1229 accept 0 ALIGNMENT 935 Y12-2h15.p1k chr09 31 1216 93968 95159 F 1186 93.93 1245 accept 0 ALIGNMENT 1000 Y12-2h15.q1k chr09 1226 36 97478 98681 C 1191 95.63 1285 accept 0 ALIGNMENT 853 Y12-2h16.p1k chr04 23 1074 892263 893311 F 1052 94.96 1258 accept 0 ALIGNMENT 56 Y12-2h16.p1k chr12 236 35 600027 600228 C 202 76.24 1258 reject_low 1 ALIGNMENT 1007 Y12-2h16.q1k chr04 1178 34 896270 897417 C 1145 97.12 1277 accept 0 ALIGNMENT 0 Y12-2h16.p1k chr12 601 237 600028 600027 C 365 0.00 1258 reject_low 1 ALIGNMENT 33 Y12-2h17.p1k chr04 870 487 44504 44890 C 384 70.57 1222 reject_low 6 ALIGNMENT 51 Y12-2h17.p1k chr10 605 924 520753 521066 F 320 74.06 1222 reject_low 5 ALIGNMENT 0 Y12-2h17.p1k chr10 601 62 382079 382078 C 540 0.00 1222 reject_low 4 ALIGNMENT 991 Y12-2h17.p1k chr02 25 1222 85175 86387 F 1198 95.16 1222 accept 0 ALIGNMENT 146 Y12-2h17.q1k chr05 844 1150 363093 363412 F 307 82.74 1289 reject_low 1 ALIGNMENT 150 Y12-2h17.p1k chr12 416 989 96607 97179 F 574 76.31 1222 reject_low 3 ALIGNMENT 0 Y12-2h17.p1k chr01 62 238 140379 140378 F 177 0.00 1222 reject_low 2 ALIGNMENT 76 Y12-2h17.p1k chr10 903 602 381780 382078 C 302 76.49 1222 reject_low 4 ALIGNMENT 0 Y12-2h17.p1k chr12 62 415 96607 96606 F 354 0.00 1222 reject_low 3 ALIGNMENT 200 Y12-2h17.p1k chr01 239 989 140379 141128 F 751 76.43 1222 reject_low 2 ALIGNMENT 914 Y12-2h17.q1k chr02 1150 43 88807 89928 C 1108 94.95 1289 accept 0 ALIGNMENT 0 Y12-2h17.q1k chr05 62 843 363093 363092 F 782 0.00 1289 reject_low 1 ALIGNMENT 0 Y12-2h17.p1k chr10 62 604 520753 520752 F 543 0.00 1222 reject_low 5 ALIGNMENT 0 Y12-2h17.p1k chr04 486 62 44891 44890 C 425 0.00 1222 reject_low 6 ALIGNMENT 764 Y12-2h18.p1k chr12 1058 25 743631 744660 C 1034 93.23 1265 accept 0 ALIGNMENT 1017 Y12-2h18.q1k chr12 36 1209 739888 741074 F 1174 96.34 1275 accept 0 ALIGNMENT 634 Y12-2h19.q1k chr08 893 35 267865 268731 C 859 91.39 1095 accept 0 ALIGNMENT 949 Y12-2h19.p1k chr08 19 1179 264003 265187 F 1161 95.26 1183 accept 0 ALIGNMENT 811 Y12-2h20.p1k chr15 1160 131 687657 688672 C 1030 94.85 1231 accept_chi 1 ALIGNMENT 918 Y12-2h20.q1k chr13 31 1158 287175 288293 F 1128 95.12 1253 accept_chi 0 ALIGNMENT 900 Y12-2h21.p1k chr16 1117 22 322476 323565 C 1096 96.08 1190 accept 0 ALIGNMENT 997 Y12-2h21.q1k chr16 39 1179 319331 320470 F 1141 96.84 1203 accept 0 ALIGNMENT 790 Y12-2h22.p1k chr05 206 1200 451164 452156 F 995 94.47 1214 accept 0 ALIGNMENT 1000 Y12-2h22.q1k chr05 1156 36 455936 457053 C 1121 97.23 1193 accept 0 ALIGNMENT 760 Y12-2h24.q1k chr13 30 1013 804655 805628 F 984 95.33 1262 accept 0 ALIGNMENT 0 Y12-2i04.q1k chr11 82 894 458319 458318 F 813 0.00 1342 reject_low 8 ALIGNMENT 44 Y12-2i04.q1k chr07 37 82 205603 205648 F 46 100.00 1342 reject_low 3 ALIGNMENT 982 Y12-2i04.q1k chr12 37 1205 628462 629642 F 1169 96.58 1342 accept 0 ALIGNMENT 0 Y12-2i04.q1k chr07 83 894 205648 205647 F 812 0.00 1342 reject_low 3 ALIGNMENT 0 Y12-2i04.q1k chr03 83 894 90979 90978 F 812 0.00 1342 reject_low 2 ALIGNMENT 0 Y12-2i04.q1k chr07 83 894 423219 423218 F 812 0.00 1342 reject_low 4 ALIGNMENT 44 Y12-2i04.q1k chr13 37 82 504970 505015 F 46 100.00 1342 reject_low 5 ALIGNMENT 41 Y12-2i04.q1k chr04 82 37 1461697 1461742 C 46 97.83 1342 reject_low 7 ALIGNMENT 0 Y12-2i04.q1k chr01 83 894 181256 181255 F 812 0.00 1342 reject_low 1 ALIGNMENT 0 Y12-2i04.q1k chr07 894 83 857376 857375 C 812 0.00 1342 reject_low 9 ALIGNMENT 0 Y12-2i04.q1k chr04 894 83 1461698 1461697 C 812 0.00 1342 reject_low 7 ALIGNMENT 0 Y12-2i04.q1k chr14 83 894 443129 443128 F 812 0.00 1342 reject_low 6 ALIGNMENT 39 Y12-2i04.q1k chr11 37 81 458276 458319 F 45 97.78 1342 reject_low 8 ALIGNMENT 38 Y12-2i04.q1k chr07 82 37 857375 857420 C 46 95.65 1342 reject_low 9 ALIGNMENT 44 Y12-2i04.q1k chr14 37 82 443084 443129 F 46 100.00 1342 reject_low 6 ALIGNMENT 44 Y12-2i04.q1k chr07 37 82 423174 423219 F 46 100.00 1342 reject_low 4 ALIGNMENT 44 Y12-2i04.q1k chr01 37 82 181211 181256 F 46 100.00 1342 reject_low 1 ALIGNMENT 0 Y12-2i04.q1k chr13 83 894 505015 505014 F 812 0.00 1342 reject_low 5 ALIGNMENT 44 Y12-2i04.q1k chr03 37 82 90934 90979 F 46 100.00 1342 reject_low 2 ALIGNMENT 532 Y12-2i05.q1k chr09 912 41 380370 381245 C 872 88.07 1417 accept 0 ALIGNMENT 730 Y12-2i10.p1k chr04 22 880 685314 686161 F 859 96.97 1336 accept 0 ALIGNMENT 815 Y12-2i12.q1k chr14 28 1039 743060 744085 F 1012 95.26 1332 accept 0 ALIGNMENT 227 Y12-2i13.p1k chr04 25 320 77891 78186 F 296 92.57 1520 accept 0 ALIGNMENT 965 Y12-2i15.p1k chr15 1170 19 448672 449830 C 1152 95.57 1260 accept 0 ALIGNMENT 716 Y12-2i16.p1k chr14 831 23 68812 69615 C 809 97.40 1297 accept 0 ALIGNMENT 583 Y12-2i17.p1k chr16 711 17 357988 358671 C 695 96.12 1329 accept 0 ALIGNMENT 0 Y12-2i18.p1k chr09 644 645 391575 392114 C 0 0.00 1234 reject_low 13 ALIGNMENT 27 Y12-2i18.p1k chr09 1045 1013 392011 392043 C 33 93.94 1234 reject_low 42 ALIGNMENT 0 Y12-2i18.p1k chr09 976 963 391990 392093 C 14 0.00 1234 reject_low 37 ALIGNMENT 0 Y12-2i18.p1k chr09 715 713 391279 391290 C 3 0.00 1234 reject_low 20 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 1046 392127 392136 C 1 0.00 1234 reject_low 40 ALIGNMENT 110 Y12-2i18.p1k chr09 746 615 391590 391721 C 132 96.21 1234|0,1 reject_low 16 ALIGNMENT 37 Y12-2i18.p1k chr09 723 635 392324 392403 C 89 85.39 1234 reject_low 15,29 ALIGNMENT 0 Y12-2i18.p1k chr09 634 616 392404 392770 C 19 0.00 1234 reject_low 15,29 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 391609 392176 C 30 0.00 1234 reject_low 27 ALIGNMENT 0 Y12-2i18.p1k chr09 614 62 392226 392225 C 553 0.00 1234 reject_low 23 ALIGNMENT 0 Y12-2i18.p1k chr09 1048 1046 392593 392604 C 3 0.00 1234 reject_low 41 ALIGNMENT 0 Y12-2i18.p1k chr09 992 965 392739 392685 C 28 0.00 1234 reject_low 35 ALIGNMENT 63 Y12-2i18.p1k chr09 1234 1013 392155 392367 C 222 80.18 1234 reject_low 31 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 792 391609 391589 C 317 0.00 1234 reject_low 19 ALIGNMENT 0 Y12-2i18.p1k chr09 1012 1010 391963 391955 C 3 0.00 1234 reject_low 44 ALIGNMENT 0 Y12-2i18.p1k chr09 644 645 391953 392114 C 0 0.00 1234 reject_low 43 ALIGNMENT 279 Y12-2i18.p1k chr09 1053 615 391455 391892 C 439 90.43 1234|0,1 reject_low 2 ALIGNMENT 0 Y12-2i18.p1k chr09 542 543 392844 393035 C 0 0.00 1234 reject_bad_break 0 ALIGNMENT 103 Y12-2i18.p1k chr09 758 635 392208 392331 C 124 95.97 1234 reject_low 24 ALIGNMENT 23 Y12-2i18.p1k chr09 1170 1109 392331 392391 C 62 82.26 1234 reject_low 26 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391937 392770 C 0 0.00 1234 reject_low 4 ALIGNMENT 78 Y12-2i18.p1k chr09 712 615 391291 391388 C 98 94.90 1234|0,1 reject_low 20 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391514 392770 C 0 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 62 392676 392675 C 985 0.00 1234 reject_low 26 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391343 392770 C 0 0.00 1234 reject_low 21 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391388 392770 C 0 0.00 1234 reject_low 20 ALIGNMENT 115 Y12-2i18.p1k chr09 793 635 391624 391791 C 159 92.45 1234|0,10 reject_low 39 ALIGNMENT 272 Y12-2i18.p1k chr09 1033 615 391258 391676 C 419 90.69 1234|0,1 reject_low 3 ALIGNMENT 0 Y12-2i18.p1k chr09 911 62 392739 392738 C 850 0.00 1234 reject_low 35,40 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 392356 392563 C 30 0.00 1234 reject_low 28 ALIGNMENT 199 Y12-2i18.p1k chr09 871 615 391258 391514 C 257 94.16 1234|0,1 reject_low 5 ALIGNMENT 23 Y12-2i18.p1k chr09 881 855 392094 392120 C 27 96.30 1234 reject_low 30,36,44 ALIGNMENT 30 Y12-2i18.p1k chr09 667 635 392335 392367 C 33 96.97 1234 reject_low 38 ALIGNMENT 0 Y12-2i18.p1k chr09 758 616 392370 392770 C 143 0.00 1234 reject_low 25 ALIGNMENT 71 Y12-2i18.p1k chr09 1078 990 392141 392228 C 89 95.51 1234 reject_low 33 ALIGNMENT 87 Y12-2i18.p1k chr09 972 738 392004 392228 C 235 84.26 1234|8,0 reject_low 29 ALIGNMENT 26 Y12-2i18.p1k chr09 881 849 391590 391622 C 33 93.94 1234 reject_low 34 ALIGNMENT 109 Y12-2i18.p1k chr09 833 635 391422 391620 C 199 87.94 1234|0,10 reject_low 18 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 1046 392127 392685 C 1 0.00 1234 reject_low 35 ALIGNMENT 60 Y12-2i18.p1k chr09 615 539 392771 392847 C 77 96.10 1234|0,4 reject_bad_break 0 reject_low 1,2,3,4,5,6,7,8,10,13,14,15,16,17,18,19,20,21,24,25,29,30,31,33,34,39 ALIGNMENT 76 Y12-2i18.p1k chr09 824 615 392106 392306 C 210 83.33 1234|0,1 reject_low 14 ALIGNMENT 0 Y12-2i18.p1k chr09 805 794 391621 391623 C 12 0.00 1234 reject_low 39 ALIGNMENT 0 Y12-2i18.p1k chr09 644 645 392034 392114 C 0 0.00 1234 reject_bad_break 0 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391559 392770 C 0 0.00 1234 reject_low 6 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1010 391609 391955 C 99 0.00 1234 reject_low 37 ALIGNMENT 85 Y12-2i18.p1k chr09 1181 885 391916 392207 C 297 80.13 1234 reject_low 15 ALIGNMENT 23 Y12-2i18.p1k chr09 962 936 392094 392120 C 27 96.30 1234 reject_low 37 ALIGNMENT 0 Y12-2i18.p1k chr09 614 62 392145 392144 C 553 0.00 1234 reject_low 43 ALIGNMENT 0 Y12-2i18.p1k chr09 737 724 392229 392323 C 14 0.00 1234 reject_low 29 ALIGNMENT 0 Y12-2i18.p1k chr09 644 645 391611 392114 C 0 0.00 1234 reject_low 18 ALIGNMENT 27 Y12-2i18.p1k chr09 1000 966 392641 392675 C 35 91.43 1234 reject_low 31,41 ALIGNMENT 23 Y12-2i18.p1k chr09 1044 1013 391931 391962 C 32 90.62 1234 reject_low 44 ALIGNMENT 0 Y12-2i18.p1k chr09 614 62 391299 391298 C 553 0.00 1234 reject_low 11 ALIGNMENT 0 Y12-2i18.p1k chr09 967 616 392719 392770 C 352 0.00 1234 reject_low 7 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391676 392770 C 0 0.00 1234 reject_low 3 ALIGNMENT 27 Y12-2i18.p1k chr09 1045 1013 392605 392637 C 33 93.94 1234 reject_low 41 ALIGNMENT 0 Y12-2i18.p1k chr09 1012 1001 392638 392640 C 12 0.00 1234 reject_low 41 ALIGNMENT 44 Y12-2i18.p1k chr09 712 615 392137 392225 C 98 86.73 1234 reject_low 23 ALIGNMENT 0 Y12-2i18.p1k chr09 782 759 392229 392207 C 24 0.00 1234 reject_low 24 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 392306 392770 C 0 0.00 1234 reject_low 14 ALIGNMENT 85 Y12-2i18.p1k chr09 791 615 391590 391766 C 177 86.44 1234|0,1 reject_low 19 ALIGNMENT 290 Y12-2i18.p1k chr09 546 26 393032 393507 C 521 88.68 1234|4,0 reject_bad_break 0 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391892 392770 C 0 0.00 1234 reject_low 2 ALIGNMENT 104 Y12-2i18.p1k chr09 857 635 391182 391413 C 223 83.86 1234|0,10 reject_low 17 ALIGNMENT 0 Y12-2i18.p1k chr09 1113 1114 391604 391855 C 0 0.00 1234 reject_low 25,42,44 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391469 392770 C 0 0.00 1234 reject_low 8 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 882 391609 391589 C 227 0.00 1234 reject_low 34 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 392144 392770 C 0 0.00 1234 reject_bad_break 0 reject_low 13,17,18,39 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 392392 392644 C 30 0.00 1234 reject_low 26 ALIGNMENT 0 Y12-2i18.p1k chr09 965 62 392676 392675 C 904 0.00 1234 reject_low 41 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 62 392001 392000 C 985 0.00 1234 reject_low 12 ALIGNMENT 0 Y12-2i18.p1k chr09 715 700 391279 391258 C 16 0.00 1234 reject_low 21 ALIGNMENT 38 Y12-2i18.p1k chr09 1234 1047 391948 392126 C 188 78.19 1234 reject_low 14,22,23,35,40 ALIGNMENT 0 Y12-2i18.p1k chr09 1048 62 392593 392592 C 987 0.00 1234 reject_low 28 ALIGNMENT 0 Y12-2i18.p1k chr09 889 872 391259 391258 C 18 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-2i18.p1k chr09 911 616 392739 392770 C 296 0.00 1234 reject_low 31 ALIGNMENT 111 Y12-2i18.p1k chr09 849 615 391235 391469 C 235 85.53 1234|0,1 reject_low 8 ALIGNMENT 0 Y12-2i18.p1k chr09 965 965 392676 392685 C 1 0.00 1234 reject_low 31 ALIGNMENT 0 Y12-2i18.p1k chr09 889 679 391236 391235 C 211 0.00 1234 reject_low 11 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 62 392208 392207 C 985 0.00 1234 reject_low 27 ALIGNMENT 0 Y12-2i18.p1k chr09 886 616 392719 392770 C 271 0.00 1234 reject_low 10 ALIGNMENT 166 Y12-2i18.p1k chr09 951 635 391259 391584 C 317 87.07 1234|0,10 reject_low 13 ALIGNMENT 27 Y12-2i18.p1k chr09 836 806 391590 391620 C 31 93.55 1234 reject_low 38,39,43 ALIGNMENT 44 Y12-2i18.p1k chr09 678 615 391235 391298 C 64 92.19 1234 reject_low 11 ALIGNMENT 0 Y12-2i18.p1k chr09 854 780 392121 392105 C 75 0.00 1234 reject_low 30 ALIGNMENT 226 Y12-2i18.p1k chr09 1178 615 391370 391937 C 564 83.87 1234|0,1 reject_low 4 ALIGNMENT 0 Y12-2i18.p1k chr09 1012 1001 392044 392172 C 12 0.00 1234 reject_low 42 ALIGNMENT 150 Y12-2i18.p1k chr09 1078 887 392528 392718 C 192 94.27 1234 reject_low 10 ALIGNMENT 26 Y12-2i18.p1k chr09 1000 968 392047 392079 C 33 90.91 1234|12,0 reject_low 44 ALIGNMENT 0 Y12-2i18.p1k chr09 1012 1001 392170 392334 C 12 0.00 1234 reject_low 40 ALIGNMENT 0 Y12-2i18.p1k chr09 929 882 391623 392093 C 48 0.00 1234 reject_low 36 ALIGNMENT 23 Y12-2i18.p1k chr09 1078 1047 392645 392675 C 32 93.75 1234 reject_low 26 ALIGNMENT 0 Y12-2i18.p1k chr09 952 953 392383 392697 C 0 0.00 1234 reject_low 40 ALIGNMENT 264 Y12-2i18.p1k chr09 1178 635 392126 392637 C 544 86.95 1234 reject_low 1 ALIGNMENT 0 Y12-2i18.p1k chr09 964 965 391966 392011 C 0 0.00 1234 reject_low 29 ALIGNMENT 0 Y12-2i18.p1k chr09 1012 1001 392368 392640 C 12 0.00 1234 reject_low 31 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 699 392127 392105 C 348 0.00 1234 reject_low 22 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 837 391609 391589 C 272 0.00 1234 reject_low 38,39,43 ALIGNMENT 165 Y12-2i18.p1k chr09 1118 783 391896 392228 C 336 86.01 1234|5,0 reject_low 24 ALIGNMENT 0 Y12-2i18.p1k chr09 988 989 391978 392058 C 0 0.00 1234 reject_low 44 ALIGNMENT 27 Y12-2i18.p1k chr09 1045 1013 392137 392169 C 33 93.94 1234 reject_low 40 ALIGNMENT 0 Y12-2i18.p1k chr09 889 834 391423 391422 C 56 0.00 1234 reject_low 18 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 391609 392338 C 30 0.00 1234 reject_low 9 ALIGNMENT 83 Y12-2i18.p1k chr09 1178 957 391748 391973 C 222 82.88 1234|0,8 reject_low 29,30 ALIGNMENT 0 Y12-2i18.p1k chr09 848 837 391623 391625 C 12 0.00 1234 reject_low 34 ALIGNMENT 22 Y12-2i18.p1k chr09 1178 1109 392288 392355 C 70 81.43 1234 reject_low 28 ALIGNMENT 218 Y12-2i18.p1k chr09 1078 547 392339 392839 C 532 85.15 1234 reject_low 9 ALIGNMENT 52 Y12-2i18.p1k chr09 704 635 391893 391962 C 70 92.86 1234|0,10 reject_low 43 ALIGNMENT 62 Y12-2i18.p1k chr09 699 615 391259 391343 C 85 92.94 1234|0,1 reject_low 21 ALIGNMENT 0 Y12-2i18.p1k chr09 935 62 392121 392120 C 874 0.00 1234 reject_low 37 ALIGNMENT 41 Y12-2i18.p1k chr09 1045 993 392686 392738 C 53 94.34 1234 reject_low 35 ALIGNMENT 27 Y12-2i18.p1k chr09 1000 966 392173 392207 C 35 91.43 1234 reject_low 42 ALIGNMENT 0 Y12-2i18.p1k chr09 1113 1114 391604 391900 C 0 0.00 1234 reject_low 24 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391847 392770 C 0 0.00 1234 reject_low 34 ALIGNMENT 0 Y12-2i18.p1k chr09 889 850 391236 391235 C 40 0.00 1234 reject_low 8 ALIGNMENT 0 Y12-2i18.p1k chr09 967 882 392080 392093 C 86 0.00 1234 reject_low 44 ALIGNMENT 0 Y12-2i18.p1k chr09 889 858 391183 391182 C 32 0.00 1234 reject_low 17 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 391609 392140 C 30 0.00 1234 reject_low 33 ALIGNMENT 0 Y12-2i18.p1k chr09 677 62 391623 391622 C 616 0.00 1234 reject_low 32 ALIGNMENT 0 Y12-2i18.p1k chr09 538 62 392848 392847 C 477 0.00 1234 reject_low 1,2,3,4,5,6,7,8,10,13,14,15,16,17,18,19,20,21,24,25,29,30,31,33,34,39 ALIGNMENT 0 Y12-2i18.p1k chr09 634 616 392251 392770 C 19 0.00 1234 reject_low 30 ALIGNMENT 31 Y12-2i18.p1k chr09 653 615 392106 392144 C 39 94.87 1234|9,1 reject_bad_break 0 reject_low 13,17,18,39,43 ALIGNMENT 0 Y12-2i18.p1k chr09 634 616 392332 392770 C 19 0.00 1234 reject_low 24 ALIGNMENT 0 Y12-2i18.p1k chr09 956 882 391974 392093 C 75 0.00 1234 reject_low 30 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 392545 392563 C 30 0.00 1234 reject_low 41 ALIGNMENT 0 Y12-2i18.p1k chr09 989 918 392229 392336 C 72 0.00 1234 reject_low 33 ALIGNMENT 32 Y12-2i18.p1k chr09 964 912 392686 392738 C 53 88.68 1234|12,0 reject_low 31,35,40 ALIGNMENT 52 Y12-2i18.p1k chr09 1000 941 392335 392394 C 60 95.00 1234|0,12 reject_low 40 ALIGNMENT 0 Y12-2i18.p1k chr09 854 62 392121 392120 C 793 0.00 1234 reject_low 36,44 ALIGNMENT 0 Y12-2i18.p1k chr09 546 62 392840 392839 C 485 0.00 1234 reject_low 9 ALIGNMENT 21 Y12-2i18.p1k chr09 1078 1049 392564 392592 C 30 93.33 1234 reject_low 28,41 ALIGNMENT 124 Y12-2i18.p1k chr09 779 635 392106 392250 C 145 96.55 1234 reject_low 30 ALIGNMENT 22 Y12-2i18.p1k chr09 1178 1109 391541 391608 C 70 81.43 1234|0,5 reject_bad_break 0 reject_low 9,16,19,24,25,27,33,34,36,37,38,39,42,43,44 ALIGNMENT 0 Y12-2i18.p1k chr09 644 645 391404 392114 C 0 0.00 1234 reject_low 17 ALIGNMENT 22 Y12-2i18.p1k chr09 1009 977 391956 391989 C 33 90.91 1234|0,12 reject_low 37,44 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 391609 391591 C 30 0.00 1234 reject_bad_break 0 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391766 392770 C 0 0.00 1234 reject_low 19 ALIGNMENT 24 Y12-2i18.p1k chr09 1234 1109 392425 392544 C 126 77.78 1234 reject_low 10,41 ALIGNMENT 0 Y12-2i18.p1k chr09 965 62 392208 392207 C 904 0.00 1234 reject_low 42 ALIGNMENT 0 Y12-2i18.p1k chr09 644 645 391782 392114 C 0 0.00 1234 reject_low 39 ALIGNMENT 26 Y12-2i18.p1k chr09 962 930 391590 391622 C 33 93.94 1234 reject_low 36 ALIGNMENT 0 Y12-2i18.p1k chr09 862 616 392392 392770 C 247 0.00 1234 reject_low 33 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 1079 392545 392527 C 30 0.00 1234 reject_low 10 ALIGNMENT 20 Y12-2i18.p1k chr09 1078 1047 391970 392000 C 32 90.62 1234 reject_low 12 ALIGNMENT 0 Y12-2i18.p1k chr09 634 616 392638 392770 C 19 0.00 1234 reject_low 1 ALIGNMENT 0 Y12-2i18.p1k chr09 805 668 391621 392334 C 138 0.00 1234 reject_low 38 ALIGNMENT 0 Y12-2i18.p1k chr09 634 62 392368 392367 C 573 0.00 1234 reject_low 38 ALIGNMENT 0 Y12-2i18.p1k chr09 634 62 392170 392169 C 573 0.00 1234 reject_low 22 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 825 392127 392105 C 222 0.00 1234 reject_low 14 ALIGNMENT 0 Y12-2i18.p1k chr09 1048 1045 391918 391930 C 4 0.00 1234 reject_low 44 ALIGNMENT 326 Y12-2i18.p1k chr09 1078 635 391592 392043 C 444 92.79 1234|0,10 reject_bad_break 0 ALIGNMENT 0 Y12-2i18.p1k chr09 889 760 391236 391235 C 130 0.00 1234 reject_low 20,21,32 ALIGNMENT 59 Y12-2i18.p1k chr09 698 635 392106 392169 C 64 98.44 1234 reject_low 22 ALIGNMENT 94 Y12-2i18.p1k chr09 1170 968 392520 392718 C 203 84.73 1234 reject_low 7 ALIGNMENT 24 Y12-2i18.p1k chr09 759 716 391235 391278 C 44 86.36 1234 reject_low 20,21,32 ALIGNMENT 124 Y12-2i18.p1k chr09 836 615 391626 391847 C 222 88.29 1234|0,1 reject_low 34 ALIGNMENT 0 Y12-2i18.p1k chr09 1048 1046 391918 392010 C 3 0.00 1234 reject_low 42 ALIGNMENT 54 Y12-2i18.p1k chr09 917 863 392337 392391 C 55 100.00 1234 reject_low 33 ALIGNMENT 0 Y12-2i18.p1k chr09 615 616 391721 392770 C 0 0.00 1234 reject_low 16 ALIGNMENT 26 Y12-2i18.p1k chr09 710 678 391590 391622 C 33 93.94 1234 reject_low 32 ALIGNMENT 0 Y12-2i18.p1k chr09 1046 713 392127 392136 C 334 0.00 1234 reject_low 23 ALIGNMENT 0 Y12-2i18.p1k chr09 884 724 392208 392323 C 161 0.00 1234 reject_low 15 ALIGNMENT 0 Y12-2i18.p1k chr09 1048 1044 391918 392093 C 5 0.00 1234 reject_low 25 ALIGNMENT 0 Y12-2i18.p1k chr09 805 705 391621 391892 C 101 0.00 1234 reject_low 43 ALIGNMENT 23 Y12-2i18.p1k chr09 1118 1049 391851 391917 C 70 81.43 1234|5,0 reject_low 25,42,44 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 963 391609 391589 C 146 0.00 1234 reject_low 36 ALIGNMENT 23 Y12-2i18.p1k chr09 1078 1047 392177 392207 C 32 93.75 1234 reject_low 27 ALIGNMENT 165 Y12-2i18.p1k chr09 883 615 391291 391559 C 269 89.96 1234|0,1 reject_low 6 ALIGNMENT 0 Y12-2i18.p1k chr09 715 711 391279 391589 C 5 0.00 1234 reject_low 32 ALIGNMENT 198 Y12-2i18.p1k chr09 1043 759 392094 392369 C 285 92.28 1234 reject_low 25 ALIGNMENT 0 Y12-2i18.p1k chr09 1108 747 391609 391589 C 362 0.00 1234 reject_low 16 ALIGNMENT 942 Y12-2i19.q1k chr13 1166 34 66528 67669 C 1133 95.59 1302 accept 0 ALIGNMENT 933 Y12-2i19.p1k chr13 20 1189 63584 64759 F 1170 95.38 1193 accept 0 ALIGNMENT 877 Y12-2i20.p1k chr10 1094 23 277730 278813 C 1072 95.34 1157 accept 0 ALIGNMENT 295 Y12-2i20.q1k chr10 194 638 272877 273319 F 445 91.91 1093 accept 0 ALIGNMENT 879 Y12-2i21.q1k chr13 1074 35 764200 765249 C 1040 95.96 1257 accept 0 ALIGNMENT 910 Y12-2i21.p1k chr13 17 1171 762217 763378 F 1155 94.63 1171 accept 0 ALIGNMENT 835 Y12-2i22.q1k chr12 30 1044 465131 466160 F 1015 93.89 1137 accept 1 ALIGNMENT 0 Y12-2i22.p1k chr06 131 753 31729 31728 F 623 0.00 1169 reject_low 3 ALIGNMENT 835 Y12-2i22.q1k chr12 30 1044 455994 457023 F 1015 93.89 1137 accept 0 ALIGNMENT 88 Y12-2i22.p1k chr06 25 130 31623 31729 F 106 97.17 1169 reject_low 3 ALIGNMENT 808 Y12-2i22.p1k chr12 1084 25 458347 459414 C 1060 94.34 1169 reject_low 2 ALIGNMENT 812 Y12-2i22.p1k chr12 1111 25 467455 468551 C 1087 93.74 1169 accept 0,1 ALIGNMENT 199 Y12-2i23.q1k chr13 637 181 764695 765149 C 457 82.06 1409 accept 0 ALIGNMENT 917 Y12-2i24.p1k chr12 68 1129 489754 490814 F 1062 96.14 1129 accept_chi 0 ALIGNMENT 153 Y12-2i24.q1k chr12 1 201 465191 465390 F 201 93.03 1188 accept_chi 4 ALIGNMENT 153 Y12-2i24.q1k chr12 1 201 456054 456253 F 201 93.03 1188 accept_chi 3 ALIGNMENT 830 Y12-2i24.p1k chr12 18 857 460872 461712 F 840 99.88 1129 reject_low 2 ALIGNMENT 830 Y12-2i24.p1k chr12 18 857 451735 452575 F 840 99.88 1129 reject_low 1 ALIGNMENT 914 Y12-2j07.q1k chr10 32 1142 299151 300278 F 1111 95.50 1301 accept 0 ALIGNMENT 952 Y12-2j07.p1k chr10 1185 35 302212 303375 C 1151 95.48 1241 accept 0 ALIGNMENT 227 Y12-2j08.p1k chr02 158 542 154861 155239 F 385 90.13 983 accept 0 ALIGNMENT 908 Y12-2j09.p1k chr04 20 1085 1451701 1452782 F 1066 96.25 1211 accept 0 ALIGNMENT 242 Y12-2j09.q1k chr04 573 220 1455502 1455846 C 354 90.40 1301 accept 0 ALIGNMENT 955 Y12-2j12.p1k chr08 1159 27 350389 351538 C 1133 96.12 1220 accept 0 ALIGNMENT 929 Y12-2j12.q1k chr08 33 1054 345841 346871 F 1022 97.75 1318 accept 0 ALIGNMENT 791 Y12-2j13.q1k chr08 28 924 138189 139102 F 897 96.88 1240 accept 0 ALIGNMENT 984 Y12-2j13.p1k chr08 1136 18 142552 143682 C 1119 96.60 1227 accept 0 ALIGNMENT 280 Y12-2j14.p1k chr07 549 81 332152 332609 C 469 89.98 1271 accept_chi 0 ALIGNMENT 170 Y12-2j14.q1k chr15 253 543 665947 666232 F 291 87.97 1356 accept_chi 1 ALIGNMENT 301 Y12-2j15.p1k chr02 58 379 604272 604594 F 322 99.07 1213 accept 0 ALIGNMENT 0 Y12-2j16.q1k chr06 62 381 158393 158392 F 320 0.00 1304 reject_low 5 ALIGNMENT 0 Y12-2j16.q1k chr08 897 558 134004 134003 C 340 0.00 1304 reject_low 11 ALIGNMENT 0 Y12-2j16.q1k chr16 566 897 804550 804549 F 332 0.00 1304 reject_low 14 ALIGNMENT 0 Y12-2j16.q1k chr04 388 62 434708 434707 C 327 0.00 1304 reject_low 8 ALIGNMENT 82 Y12-2j16.q1k chr07 427 598 701106 701277 F 172 84.88 1304 reject_low 9 ALIGNMENT 89 Y12-2j16.q1k chr12 365 598 796783 797011 F 234 82.91 1304 reject_low 3 ALIGNMENT 0 Y12-2j16.q1k chr10 62 382 543399 543398 F 321 0.00 1304 reject_low 13 ALIGNMENT 0 Y12-2j16.q1k chr16 599 897 776334 776333 F 299 0.00 1304 reject_low 16 ALIGNMENT 0 Y12-2j16.q1k chr01 62 387 189463 189462 F 326 0.00 1304 reject_low 12 ALIGNMENT 45 Y12-2j16.q1k chr16 509 565 804494 804550 F 57 94.74 1304 reject_low 14 ALIGNMENT 0 Y12-2j16.q1k chr07 599 897 701277 701276 F 299 0.00 1304 reject_low 9 ALIGNMENT 0 Y12-2j16.q1k chr15 897 585 227942 227941 C 313 0.00 1304 reject_low 2 ALIGNMENT 103 Y12-2j16.q1k chr03 341 598 149477 149730 F 258 82.95 1304 reject_low 1 ALIGNMENT 0 Y12-2j16.q1k chr07 62 426 701106 701105 F 365 0.00 1304 reject_low 9 ALIGNMENT 0 Y12-2j16.q1k chr03 599 897 149730 149729 F 299 0.00 1304 reject_low 1 ALIGNMENT 67 Y12-2j16.q1k chr04 360 453 945362 945455 F 94 92.55 1304 reject_low 10 ALIGNMENT 0 Y12-2j16.q1k chr11 897 599 313324 313323 C 299 0.00 1304 reject_low 7 ALIGNMENT 0 Y12-2j16.q1k chr12 897 599 365889 365888 C 299 0.00 1304 reject_low 6 ALIGNMENT 0 Y12-2j16.q1k chr04 62 359 945362 945361 F 298 0.00 1304 reject_low 10 ALIGNMENT 0 Y12-2j16.q1k chr04 454 897 945455 945454 F 444 0.00 1304 reject_low 10 ALIGNMENT 792 Y12-2j16.q1k chr07 37 1139 327601 328701 F 1103 93.20 1304 accept 0 ALIGNMENT 0 Y12-2j16.q1k chr16 62 388 436096 436095 F 327 0.00 1304 reject_low 15 ALIGNMENT 97 Y12-2j16.q1k chr15 580 390 664090 664280 C 191 85.86 1304 reject_low 4 ALIGNMENT 0 Y12-2j16.q1k chr16 62 508 804494 804493 F 447 0.00 1304 reject_low 14 ALIGNMENT 26 Y12-2j16.q1k chr16 341 417 776089 776165 F 77 79.22 1304 reject_low 16 ALIGNMENT 0 Y12-2j16.q1k chr01 599 897 189676 189675 F 299 0.00 1304 reject_low 12 ALIGNMENT 0 Y12-2j16.q1k chr12 62 364 796783 796782 F 303 0.00 1304 reject_low 3 ALIGNMENT 0 Y12-2j16.q1k chr08 349 62 134211 134210 C 288 0.00 1304 reject_low 11 ALIGNMENT 47 Y12-2j16.q1k chr16 389 497 436096 436203 F 109 84.40 1304 reject_low 15 ALIGNMENT 0 Y12-2j16.q1k chr15 897 581 664091 664090 C 317 0.00 1304 reject_low 4 ALIGNMENT 85 Y12-2j16.q1k chr04 598 389 434496 434707 C 210 83.33 1304 reject_low 8 ALIGNMENT 64 Y12-2j16.q1k chr16 439 598 776178 776334 F 160 83.12 1304 reject_low 16 ALIGNMENT 79 Y12-2j16.q1k chr12 598 349 365888 366139 C 250 79.60 1304 reject_low 6 ALIGNMENT 0 Y12-2j16.q1k chr03 62 340 149477 149476 F 279 0.00 1304 reject_low 1 ALIGNMENT 49 Y12-2j16.q1k chr10 383 497 543399 543514 F 115 83.48 1304 reject_low 13 ALIGNMENT 0 Y12-2j16.q1k chr16 498 897 436203 436202 F 400 0.00 1304 reject_low 15 ALIGNMENT 0 Y12-2j16.q1k chr11 388 62 313535 313534 C 327 0.00 1304 reject_low 7 ALIGNMENT 82 Y12-2j16.q1k chr15 584 343 227941 228177 C 242 81.40 1304 reject_low 2 ALIGNMENT 86 Y12-2j16.q1k chr11 598 389 313323 313534 C 210 83.81 1304 reject_low 7 ALIGNMENT 0 Y12-2j16.q1k chr04 897 599 434497 434496 C 299 0.00 1304 reject_low 8 ALIGNMENT 0 Y12-2j16.q1k chr12 599 897 797011 797010 F 299 0.00 1304 reject_low 3 ALIGNMENT 0 Y12-2j16.q1k chr16 62 340 776089 776088 F 279 0.00 1304 reject_low 16 ALIGNMENT 0 Y12-2j16.q1k chr16 418 438 776166 776177 F 21 0.00 1304 reject_low 16 ALIGNMENT 51 Y12-2j16.q1k chr01 388 598 189463 189676 F 211 77.25 1304 reject_low 12 ALIGNMENT 93 Y12-2j16.q1k chr06 382 588 158393 158598 F 207 84.06 1304 reject_low 5 ALIGNMENT 0 Y12-2j16.q1k chr06 589 897 158598 158597 F 309 0.00 1304 reject_low 5 ALIGNMENT 67 Y12-2j16.q1k chr08 557 350 134003 134210 C 208 79.81 1304 reject_low 11 ALIGNMENT 0 Y12-2j16.q1k chr12 348 62 366140 366139 C 287 0.00 1304 reject_low 6 ALIGNMENT 556 Y12-2j16.p1k chr07 805 73 331878 332615 C 733 92.77 1113 accept 0 ALIGNMENT 0 Y12-2j16.q1k chr15 389 62 664281 664280 C 328 0.00 1304 reject_low 4 ALIGNMENT 0 Y12-2j16.q1k chr15 342 62 228178 228177 C 281 0.00 1304 reject_low 2 ALIGNMENT 0 Y12-2j16.q1k chr10 498 897 543514 543513 F 400 0.00 1304 reject_low 13 ALIGNMENT 881 Y12-2j17.p1k chr06 1190 20 145151 146317 C 1171 93.42 1234 accept 0 ALIGNMENT 875 Y12-2j19.p1k chr14 1094 29 284622 285698 C 1066 95.12 1204 accept 0 ALIGNMENT 442 Y12-2j19.q1k chr14 186 763 281321 281899 F 578 92.91 1130 accept 0 ALIGNMENT 927 Y12-2j20.p1k chr15 24 1200 776501 777684 F 1177 93.29 1206 accept 0 ALIGNMENT 326 Y12-2j20.q1k chr15 743 246 780147 780631 C 498 90.56 1301 accept 0 ALIGNMENT 192 Y12-2j20.q1k chr16 283 623 281055 281394 F 341 85.92 1301 reject_low 1 ALIGNMENT 738 Y12-2j22.p1k chr12 954 165 489754 490543 C 790 97.97 1144 reject_low 3 ALIGNMENT 969 Y12-2j22.p1k chr12 1135 30 460737 461848 C 1106 96.29 1144 accept 0 ALIGNMENT 969 Y12-2j22.p1k chr12 1135 30 451600 452711 C 1106 96.29 1144 reject_low 1 ALIGNMENT 983 Y12-2j22.q1k chr12 37 1232 466893 468102 F 1196 95.15 1238 reject_low 2 ALIGNMENT 984 Y12-2j22.q1k chr12 37 1237 457756 458970 F 1201 95.09 1238 accept 0 ALIGNMENT 0 Y12-2j22.p1k chr12 164 62 490544 490543 C 103 0.00 1144 reject_low 3 ALIGNMENT 893 Y12-2j23.q1k chr04 40 1131 791717 792812 F 1092 95.51 1247 accept 0 ALIGNMENT 544 Y12-2j23.p1k chr04 857 16 795120 795949 C 842 89.19 1154 accept 0 ALIGNMENT 411 Y12-2j24.p1k chr15 86 674 638865 639448 F 589 90.66 939 accept 0 ALIGNMENT 216 Y12-2j24.q1k chr15 607 216 644308 644699 C 392 84.69 1298 accept 0 ALIGNMENT 546 Y12-2k01.p1k chr07 987 262 505941 506650 C 726 93.80 1209 accept 0 ALIGNMENT 943 Y12-2k01.q1k chr07 28 1122 502620 503729 F 1095 96.99 1373 accept 0 ALIGNMENT 830 Y12-2k03.q1k chr08 972 1 510872 511843 C 972 96.09 1257 accept 0 ALIGNMENT 763 Y12-2k04.q1k chr16 57 936 792927 793800 F 880 97.05 1411 accept 0 ALIGNMENT 326 Y12-2k05.q1k chr16 135 828 684992 685678 F 694 83.57 1596 accept 0 ALIGNMENT 540 Y12-2k06.q1k chr12 765 76 462370 463055 C 690 93.33 1478 accept 1 ALIGNMENT 540 Y12-2k06.q1k chr12 765 76 453233 453918 C 690 93.33 1478 accept 0 ALIGNMENT 875 Y12-2k07.q1k chr16 38 1048 684921 685938 F 1011 96.14 1273 accept_chi 0 ALIGNMENT 856 Y12-2k07.p1k chr09 1098 54 292058 293091 C 1045 95.41 1265 accept_chi 1 ALIGNMENT 92 Y12-2k08.p1k chr07 411 650 931691 931941 F 240 81.25 1220 reject_low 14 ALIGNMENT 93 Y12-2k08.p1k chr07 410 650 401961 402212 F 241 81.33 1220 reject_low 12 ALIGNMENT 0 Y12-2k08.p1k chr02 211 62 350904 350903 C 150 0.00 1220 reject_low 7 ALIGNMENT 82 Y12-2k08.p1k chr03 593 411 124270 124462 C 183 84.15 1220 reject_low 17 ALIGNMENT 0 Y12-2k08.p1k chr10 799 584 354601 354600 C 216 0.00 1220 reject_low 21 ALIGNMENT 0 Y12-2k08.p1k chr10 62 410 540680 540679 F 349 0.00 1220 reject_low 15 ALIGNMENT 54 Y12-2k08.p1k chr06 517 650 158471 158603 F 134 82.84 1220 reject_low 18 ALIGNMENT 0 Y12-2k08.p1k chr02 657 799 221296 221295 F 143 0.00 1220 reject_low 5 ALIGNMENT 0 Y12-2k08.p1k chr08 212 62 134392 134391 C 151 0.00 1220 reject_low 28 ALIGNMENT 62 Y12-2k08.p1k chr09 583 411 197304 197485 C 173 81.50 1220 reject_low 22 ALIGNMENT 0 Y12-2k08.p1k chr04 292 410 802799 802899 F 119 0.00 1220 reject_low 26 ALIGNMENT 0 Y12-2k08.p1k chr02 651 799 259826 259825 F 149 0.00 1220 reject_low 11 ALIGNMENT 0 Y12-2k08.p1k chr06 62 516 158471 158470 F 455 0.00 1220 reject_low 18 ALIGNMENT 0 Y12-2k08.p1k chr02 799 286 350831 350830 C 514 0.00 1220 reject_low 7 ALIGNMENT 0 Y12-2k08.p1k chr08 517 517 134100 134110 C 1 0.00 1220 reject_low 28 ALIGNMENT 0 Y12-2k08.p1k chr08 443 298 134183 134306 C 146 0.00 1220 reject_low 28 ALIGNMENT 0 Y12-2k08.p1k chr05 799 291 250286 250285 C 509 0.00 1220 reject_low 4 ALIGNMENT 1038 Y12-2k08.q1k chr12 1192 38 461913 463072 C 1155 96.80 1286 reject_low 1 ALIGNMENT 66 Y12-2k08.p1k chr02 285 212 350830 350903 C 74 97.30 1220 reject_low 7 ALIGNMENT 0 Y12-2k08.p1k chr05 213 62 250362 250361 C 152 0.00 1220 reject_low 4 ALIGNMENT 0 Y12-2k08.p1k chr09 410 62 197486 197485 C 349 0.00 1220 reject_low 22 ALIGNMENT 0 Y12-2k08.p1k chr02 62 410 226624 226623 F 349 0.00 1220 reject_low 13 ALIGNMENT 0 Y12-2k08.p1k chr07 651 799 402212 402211 F 149 0.00 1220 reject_low 12 ALIGNMENT 95 Y12-2k08.p1k chr07 650 411 817479 817729 C 240 81.67 1220 reject_low 9 ALIGNMENT 0 Y12-2k08.p1k chr03 410 62 124463 124462 C 349 0.00 1220 reject_low 17 ALIGNMENT 1038 Y12-2k08.q1k chr12 1192 38 452776 453935 C 1155 96.80 1286 accept 0 ALIGNMENT 0 Y12-2k08.p1k chr08 799 590 134029 134028 C 210 0.00 1220 reject_low 28 ALIGNMENT 0 Y12-2k08.p1k chr03 62 212 168290 168289 F 151 0.00 1220 reject_low 2 ALIGNMENT 926 Y12-2k08.p1k chr12 25 1175 448457 449609 F 1151 94.79 1220 accept 0 ALIGNMENT 71 Y12-2k08.p1k chr15 411 518 117702 117809 F 108 89.81 1220 reject_low 27 ALIGNMENT 95 Y12-2k08.p1k chr02 411 650 265161 265411 F 240 81.67 1220 reject_low 8 ALIGNMENT 74 Y12-2k08.p1k chr04 212 291 802720 802798 F 80 98.75 1220 reject_low 26 ALIGNMENT 86 Y12-2k08.p1k chr11 594 411 457921 458114 C 184 84.78 1220 reject_low 16 ALIGNMENT 0 Y12-2k08.p1k chr06 62 414 137659 137658 F 353 0.00 1220 reject_low 23 ALIGNMENT 0 Y12-2k08.p1k chr10 651 799 540929 540928 F 149 0.00 1220 reject_low 15 ALIGNMENT 0 Y12-2k08.p1k chr04 296 799 645224 645223 F 504 0.00 1220 reject_low 3 ALIGNMENT 0 Y12-2k08.p1k chr07 62 410 931691 931690 F 349 0.00 1220 reject_low 14 ALIGNMENT 0 Y12-2k08.p1k chr13 799 598 463259 463258 C 202 0.00 1220 reject_low 19 ALIGNMENT 25 Y12-2k08.p1k chr15 519 558 117820 117860 F 40 92.50 1220 reject_low 27 ALIGNMENT 0 Y12-2k08.p1k chr07 651 799 931941 931940 F 149 0.00 1220 reject_low 14 ALIGNMENT 0 Y12-2k08.p1k chr02 651 799 226874 226873 F 149 0.00 1220 reject_low 13 ALIGNMENT 0 Y12-2k08.p1k chr03 302 799 168378 168377 F 498 0.00 1220 reject_low 2 ALIGNMENT 79 Y12-2k08.p1k chr03 213 301 168290 168378 F 89 96.63 1220 reject_low 2 ALIGNMENT 35 Y12-2k08.p1k chr06 411 558 143535 143692 F 148 77.03 1220 reject_low 25 ALIGNMENT 0 Y12-2k08.p1k chr06 651 799 158603 158602 F 149 0.00 1220 reject_low 18 ALIGNMENT 0 Y12-2k08.p1k chr06 62 410 137908 137907 F 349 0.00 1220 reject_low 24 ALIGNMENT 0 Y12-2k08.p1k chr02 62 409 221039 221038 F 348 0.00 1220 reject_low 5 ALIGNMENT 0 Y12-2k08.p1k chr03 409 62 143079 143078 C 348 0.00 1220 reject_low 20 ALIGNMENT 35 Y12-2k08.p1k chr06 411 558 137908 138065 F 148 77.03 1220 reject_low 24 ALIGNMENT 0 Y12-2k08.p1k chr11 410 62 458115 458114 C 349 0.00 1220 reject_low 16 ALIGNMENT 0 Y12-2k08.p1k chr07 410 62 817730 817729 C 349 0.00 1220 reject_low 9 ALIGNMENT 0 Y12-2k08.p1k chr04 217 62 521041 521040 C 156 0.00 1220 reject_low 6 ALIGNMENT 92 Y12-2k08.p1k chr02 411 650 226624 226874 F 240 81.25 1220 reject_low 13 ALIGNMENT 82 Y12-2k08.p1k chr04 411 593 802900 803092 F 183 84.15 1220 reject_low 26 ALIGNMENT 37 Y12-2k08.p1k chr08 589 518 134028 134099 C 72 88.89 1220 reject_low 28 ALIGNMENT 0 Y12-2k08.p1k chr02 62 410 265161 265160 F 349 0.00 1220 reject_low 8 ALIGNMENT 0 Y12-2k08.p1k chr03 799 569 142911 142910 C 231 0.00 1220 reject_low 20 ALIGNMENT 0 Y12-2k08.p1k chr03 799 594 124271 124270 C 206 0.00 1220 reject_low 17 ALIGNMENT 0 Y12-2k08.p1k chr06 559 799 138065 138064 F 241 0.00 1220 reject_low 24 ALIGNMENT 72 Y12-2k08.p1k chr10 583 434 354600 354759 C 150 85.33 1220 reject_low 21 ALIGNMENT 73 Y12-2k08.p1k chr05 290 214 250285 250361 C 77 98.70 1220 reject_low 4 ALIGNMENT 0 Y12-2k08.p1k chr06 62 410 143535 143534 F 349 0.00 1220 reject_low 25 ALIGNMENT 0 Y12-2k08.p1k chr11 799 595 457922 457921 C 205 0.00 1220 reject_low 16 ALIGNMENT 0 Y12-2k08.p1k chr04 62 213 645143 645142 F 152 0.00 1220 reject_low 3 ALIGNMENT 21 Y12-2k08.p1k chr08 516 444 134111 134182 C 73 78.08 1220 reject_low 28 ALIGNMENT 0 Y12-2k08.p1k chr15 519 518 117810 117819 F 0 0.00 1220 reject_low 27 ALIGNMENT 0 Y12-2k08.p1k chr15 559 799 117860 117859 F 241 0.00 1220 reject_low 27 ALIGNMENT 0 Y12-2k08.p1k chr02 651 799 265411 265410 F 149 0.00 1220 reject_low 8 ALIGNMENT 93 Y12-2k08.p1k chr02 410 650 259575 259826 F 241 81.33 1220 reject_low 11 ALIGNMENT 0 Y12-2k08.p1k chr13 422 62 463442 463441 C 361 0.00 1220 reject_low 19 ALIGNMENT 0 Y12-2k08.p1k chr13 651 799 184420 184419 F 149 0.00 1220 reject_low 10 ALIGNMENT 60 Y12-2k08.p1k chr06 415 570 137659 137819 F 156 83.33 1220 reject_low 23 ALIGNMENT 79 Y12-2k08.p1k chr13 597 423 463258 463441 C 175 84.57 1220 reject_low 19 ALIGNMENT 85 Y12-2k08.p1k chr10 411 650 540680 540929 F 240 80.42 1220 reject_low 15 ALIGNMENT 0 Y12-2k08.p1k chr02 62 409 259575 259574 F 348 0.00 1220 reject_low 11 ALIGNMENT 0 Y12-2k08.p1k chr09 799 584 197305 197304 C 216 0.00 1220 reject_low 22 ALIGNMENT 72 Y12-2k08.p1k chr04 290 218 520968 521040 C 73 100.00 1220 reject_low 6 ALIGNMENT 0 Y12-2k08.p1k chr06 559 799 143692 143691 F 241 0.00 1220 reject_low 25 ALIGNMENT 0 Y12-2k08.p1k chr06 571 799 137819 137818 F 229 0.00 1220 reject_low 23 ALIGNMENT 0 Y12-2k08.p1k chr04 62 211 802720 802719 F 150 0.00 1220 reject_low 26 ALIGNMENT 0 Y12-2k08.p1k chr07 799 651 817480 817479 C 149 0.00 1220 reject_low 9 ALIGNMENT 77 Y12-2k08.p1k chr03 568 410 142910 143078 C 159 84.91 1220 reject_low 20 ALIGNMENT 0 Y12-2k08.p1k chr15 62 410 117702 117701 F 349 0.00 1220 reject_low 27 ALIGNMENT 0 Y12-2k08.p1k chr04 594 799 803092 803091 F 206 0.00 1220 reject_low 26 ALIGNMENT 0 Y12-2k08.p1k chr07 62 409 401961 401960 F 348 0.00 1220 reject_low 12 ALIGNMENT 97 Y12-2k08.p1k chr02 410 656 221039 221296 F 247 81.38 1220 reject_low 5 ALIGNMENT 0 Y12-2k08.p1k chr13 62 410 184170 184169 F 349 0.00 1220 reject_low 10 ALIGNMENT 95 Y12-2k08.p1k chr13 411 650 184170 184420 F 240 81.67 1220 reject_low 10 ALIGNMENT 74 Y12-2k08.p1k chr04 214 295 645143 645224 F 82 97.56 1220 reject_low 3 ALIGNMENT 0 Y12-2k08.p1k chr10 433 62 354760 354759 C 372 0.00 1220 reject_low 21 ALIGNMENT 81 Y12-2k08.p1k chr08 297 213 134307 134391 C 85 98.82 1220 reject_low 28 ALIGNMENT 0 Y12-2k08.p1k chr04 799 291 520969 520968 C 509 0.00 1220 reject_low 6 ALIGNMENT 898 Y12-2k09.q1k chr09 1084 27 216905 217977 C 1058 96.41 1379 accept 0 ALIGNMENT 1009 Y12-2k09.p1k chr09 25 1197 213577 214757 F 1173 96.42 1220 accept 0 ALIGNMENT 944 Y12-2k10.q1k chr07 40 1189 754295 755457 F 1150 94.87 1363 accept 0 ALIGNMENT 935 Y12-2k10.p1k chr07 1101 15 758394 759489 C 1087 96.60 1215 accept 0 ALIGNMENT 94 Y12-2k12.q1k chr13 146 39 372716 372822 C 108 98.15 1269 reject_low 21 ALIGNMENT 115 Y12-2k12.q1k chr13 166 39 362586 362712 C 128 99.22 1269 reject_low 6 ALIGNMENT 0 Y12-2k12.q1k chr02 167 832 221373 221372 F 666 0.00 1269 reject_low 16 ALIGNMENT 0 Y12-2k12.q1k chr12 383 832 374436 374435 F 450 0.00 1269 reject_low 1 ALIGNMENT 0 Y12-2k12.q1k chr16 167 832 56788 56787 F 666 0.00 1269 reject_low 13 ALIGNMENT 109 Y12-2k12.q1k chr01 166 39 160239 160365 C 128 97.66 1269 reject_low 9 ALIGNMENT 807 Y12-2k12.q1k chr04 1199 166 619134 620172 C 1034 94.00 1269 accept 0 ALIGNMENT 0 Y12-2k12.q1k chr12 62 289 374344 374343 F 228 0.00 1269 reject_low 1 ALIGNMENT 0 Y12-2k12.q1k chr13 832 169 357003 357002 C 664 0.00 1269 reject_low 2 ALIGNMENT 90 Y12-2k12.q1k chr12 290 382 374344 374436 F 93 98.92 1269 reject_low 1 ALIGNMENT 117 Y12-2k12.q1k chr13 168 39 357002 357130 C 130 99.23 1269 reject_low 2 ALIGNMENT 0 Y12-2k12.q1k chr03 168 832 83036 83035 F 665 0.00 1269 reject_low 8 ALIGNMENT 0 Y12-2k12.q1k chr01 832 167 165828 165827 C 666 0.00 1269 reject_low 10 ALIGNMENT 0 Y12-2k12.q1k chr12 832 167 475976 475975 C 666 0.00 1269 reject_low 11 ALIGNMENT 101 Y12-2k12.q1k chr07 39 167 402167 402294 F 129 95.35 1269 reject_low 17 ALIGNMENT 0 Y12-2k12.q1k chr14 167 832 519497 519496 F 666 0.00 1269 reject_low 24 ALIGNMENT 110 Y12-2k12.q1k chr03 39 167 82909 83036 F 129 97.67 1269 reject_low 8 ALIGNMENT 102 Y12-2k12.q1k chr02 39 166 221245 221373 F 128 96.09 1269 reject_low 16 ALIGNMENT 0 Y12-2k12.q1k chr02 167 832 226955 226954 F 666 0.00 1269 reject_low 5 ALIGNMENT 95 Y12-2k12.q1k chr14 42 169 524940 525066 F 128 93.75 1269 reject_low 18 ALIGNMENT 86 Y12-2k12.q1k chr03 167 44 83053 83176 C 124 91.94 1269 reject_low 25 ALIGNMENT 0 Y12-2k12.q1k chr07 168 832 402294 402293 F 665 0.00 1269 reject_low 17 ALIGNMENT 822 Y12-2k12.p1k chr04 29 1059 615402 616414 F 1031 95.05 1247 accept 0 ALIGNMENT 0 Y12-2k12.q1k chr07 169 832 535548 535547 F 664 0.00 1269 reject_low 4 ALIGNMENT 109 Y12-2k12.q1k chr12 166 39 475975 476101 C 128 97.66 1269 reject_low 11 ALIGNMENT 114 Y12-2k12.q1k chr07 39 168 535420 535548 F 130 98.46 1269 reject_low 4 ALIGNMENT 92 Y12-2k12.q1k chr14 42 166 519374 519497 F 125 93.60 1269 reject_low 24 ALIGNMENT 0 Y12-2k12.q1k chr14 170 832 525066 525065 F 663 0.00 1269 reject_low 18 ALIGNMENT 0 Y12-2k12.q1k chr13 832 167 362587 362586 C 666 0.00 1269 reject_low 6 ALIGNMENT 0 Y12-2k12.q1k chr16 147 832 844725 844724 F 686 0.00 1269 reject_low 23 ALIGNMENT 0 Y12-2k12.q1k chr08 832 147 543631 543630 C 686 0.00 1269 reject_low 20 ALIGNMENT 0 Y12-2k12.q1k chr13 832 147 372717 372716 C 686 0.00 1269 reject_low 21 ALIGNMENT 0 Y12-2k12.q1k chr07 171 832 876288 876287 F 662 0.00 1269 reject_low 15 ALIGNMENT 109 Y12-2k12.q1k chr15 39 166 123501 123627 F 128 97.66 1269 reject_low 12 ALIGNMENT 103 Y12-2k12.q1k chr07 39 166 931896 932022 F 128 96.09 1269 reject_low 14 ALIGNMENT 0 Y12-2k12.q1k chr14 832 169 96609 96608 C 664 0.00 1269 reject_low 7 ALIGNMENT 94 Y12-2k12.q1k chr08 146 39 543630 543736 C 108 98.15 1269 reject_low 20 ALIGNMENT 94 Y12-2k12.q1k chr03 39 146 169413 169519 F 108 98.15 1269 reject_low 19 ALIGNMENT 94 Y12-2k12.q1k chr16 39 146 844619 844725 F 108 98.15 1269 reject_low 23 ALIGNMENT 0 Y12-2k12.q1k chr11 832 168 517095 517094 C 665 0.00 1269 reject_low 3 ALIGNMENT 0 Y12-2k12.q1k chr15 167 832 123627 123626 F 666 0.00 1269 reject_low 12 ALIGNMENT 111 Y12-2k12.q1k chr14 168 39 96608 96736 C 130 97.69 1269 reject_low 7 ALIGNMENT 109 Y12-2k12.q1k chr16 39 166 56662 56788 F 128 97.66 1269 reject_low 13 ALIGNMENT 0 Y12-2k12.q1k chr04 165 62 620173 620172 C 104 0.00 1269 accept 0 ALIGNMENT 109 Y12-2k12.q1k chr01 166 39 165827 165953 C 128 97.66 1269 reject_low 10 ALIGNMENT 94 Y12-2k12.q1k chr07 39 170 876157 876288 F 132 93.18 1269 reject_low 15 ALIGNMENT 116 Y12-2k12.q1k chr11 167 39 517094 517221 C 129 99.22 1269 reject_low 3 ALIGNMENT 0 Y12-2k12.q1k chr03 147 832 169519 169518 F 686 0.00 1269 reject_low 19 ALIGNMENT 94 Y12-2k12.q1k chr13 146 39 378304 378410 C 108 98.15 1269 reject_low 22 ALIGNMENT 0 Y12-2k12.q1k chr13 832 147 378305 378304 C 686 0.00 1269 reject_low 22 ALIGNMENT 0 Y12-2k12.q1k chr03 832 168 83054 83053 C 665 0.00 1269 reject_low 25 ALIGNMENT 0 Y12-2k12.q1k chr07 167 832 932022 932021 F 666 0.00 1269 reject_low 14 ALIGNMENT 0 Y12-2k12.q1k chr01 832 167 160240 160239 C 666 0.00 1269 reject_low 9 ALIGNMENT 115 Y12-2k12.q1k chr02 39 166 226829 226955 F 128 99.22 1269 reject_low 5 ALIGNMENT 946 Y12-2k13.p1k chr14 25 1137 489447 490562 F 1113 95.69 1232 accept 0 ALIGNMENT 866 Y12-2k13.q1k chr14 1034 36 494453 495465 C 999 96.20 1275 accept 0 ALIGNMENT 895 Y12-2k14.p1k chr07 18 1093 802924 803985 F 1076 96.75 1269 accept 0 ALIGNMENT 929 Y12-2k14.q1k chr07 1139 40 807584 808696 C 1100 96.45 1256 accept 0 ALIGNMENT 0 Y12-2k15.q1k chr03 614 902 303820 303819 F 289 0.00 1335 reject_low 1 ALIGNMENT 224 Y12-2k15.q1k chr03 36 613 303253 303820 F 578 82.35 1335 reject_low 1 ALIGNMENT 933 Y12-2k15.q1k chr14 36 1146 755262 756376 F 1111 96.04 1335 accept 0 ALIGNMENT 831 Y12-2k18.p1k chr11 1049 21 312052 313073 C 1029 95.24 1216 accept 0 ALIGNMENT 35 Y12-2k18.p1k chr13 17 60 363102 363146 F 44 95.45 1216 reject_low 1 ALIGNMENT 29 Y12-2k18.p1k chr07 56 21 110621 110656 C 36 94.44 1216 reject_low 4 ALIGNMENT 0 Y12-2k18.p1k chr07 803 57 110622 110621 C 747 0.00 1216 reject_low 4 ALIGNMENT 0 Y12-2k18.p1k chr08 61 803 62835 62834 F 743 0.00 1216 reject_low 2 ALIGNMENT 935 Y12-2k18.q1k chr11 36 1180 308086 309252 F 1145 95.02 1224 accept 0 ALIGNMENT 34 Y12-2k18.p1k chr05 59 21 434526 434564 C 39 97.44 1216 reject_low 3 ALIGNMENT 0 Y12-2k18.p1k chr05 803 60 434527 434526 C 744 0.00 1216 reject_low 3 ALIGNMENT 33 Y12-2k18.p1k chr08 17 60 62792 62835 F 44 95.45 1216 reject_low 2 ALIGNMENT 0 Y12-2k18.p1k chr13 61 803 363146 363145 F 743 0.00 1216 reject_low 1 ALIGNMENT 960 Y12-2k19.q1k chr04 36 1199 762998 764170 F 1164 95.10 1337 accept 0 ALIGNMENT 972 Y12-2k19.p1k chr04 1173 20 766118 767271 C 1154 96.01 1193 accept 0 ALIGNMENT 0 Y12-2k20.p1k chr07 785 548 732379 732378 C 238 0.00 1216 reject_low 1 ALIGNMENT 110 Y12-2k20.p1k chr07 547 42 732378 732883 C 506 74.90 1216 reject_low 1 ALIGNMENT 859 Y12-2k20.p1k chr16 1028 20 811428 812426 C 1009 96.63 1216 accept_trans 0 ALIGNMENT 993 Y12-2k20.q1k chr16 35 1218 802117 803315 F 1184 96.20 1277 accept_trans 0 ALIGNMENT 1022 Y12-2k21.q1k chr04 36 1192 154064 155220 F 1157 96.89 1277 accept_chi 0 ALIGNMENT 763 Y12-2k21.p1k chr11 1018 40 280665 281635 C 979 95.51 1189 accept_chi 1 ALIGNMENT 207 Y12-2k22.p1k chr04 955 393 991325 991890 C 563 79.93 1298 reject_low 6 ALIGNMENT 387 Y12-2k22.p1k chr13 1022 387 361540 362179 C 636 88.21 1298 accept_trans 0 ALIGNMENT 593 Y12-2k22.q1k chr13 36 1039 358240 359248 F 1004 87.65 1171 accept_trans 0 ALIGNMENT 207 Y12-2k22.p1k chr13 393 955 184914 185479 F 563 79.93 1298 reject_low 8 ALIGNMENT 576 Y12-2k22.q1k chr04 946 36 1210464 1211373 C 911 89.02 1171 reject_low 3 ALIGNMENT 516 Y12-2k22.q1k chr07 37 969 818635 819567 F 933 86.39 1171 reject_low 16 ALIGNMENT 179 Y12-2k22.p1k chr12 393 889 593893 594392 F 497 79.88 1298 reject_low 13 ALIGNMENT 204 Y12-2k22.p1k chr13 955 393 377306 377871 C 563 79.75 1298 reject_low 10 ALIGNMENT 207 Y12-2k22.p1k chr13 393 955 197081 197646 F 563 79.93 1298 reject_low 18 ALIGNMENT 0 Y12-2k22.p1k chr16 392 80 809813 810038 C 313 0.00 1298 reject_low 23 ALIGNMENT 378 Y12-2k22.q1k chr16 120 727 851951 852555 F 608 88.82 1171 reject_low 15 ALIGNMENT 0 Y12-2k22.p1k chr08 451 86 548721 549113 C 366 0.00 1298 reject_low 30 ALIGNMENT 0 Y12-2k22.p1k chr13 86 392 196861 197080 F 307 0.00 1298 reject_low 18 ALIGNMENT 207 Y12-2k22.p1k chr04 393 955 1207440 1208005 F 563 79.93 1298 reject_low 3 ALIGNMENT 576 Y12-2k22.q1k chr12 946 36 654598 655507 C 911 89.02 1171 reject_low 5 ALIGNMENT 207 Y12-2k22.p1k chr07 955 393 566453 567018 C 563 79.93 1298 reject_low 28 ALIGNMENT 207 Y12-2k22.p1k chr10 393 955 478711 479276 F 563 79.93 1298 reject_low 12 ALIGNMENT 503 Y12-2k22.q1k chr04 120 946 646819 647644 F 827 88.03 1171 reject_low 24 ALIGNMENT 472 Y12-2k22.q1k chr12 135 855 477315 478032 F 721 89.60 1171 reject_low 14 ALIGNMENT 0 Y12-2k22.p1k chr10 80 392 478485 478710 F 313 0.00 1298 reject_low 12 ALIGNMENT 207 Y12-2k22.p1k chr16 955 393 855235 855800 C 563 79.93 1298 reject_low 15 ALIGNMENT 592 Y12-2k22.q1k chr02 969 36 224786 225719 C 934 89.08 1171 reject_low 1 ALIGNMENT 207 Y12-2k22.p1k chr05 955 393 448002 448567 C 563 79.93 1298 reject_low 17 ALIGNMENT 201 Y12-2k22.p1k chr16 393 955 845158 845723 F 563 79.57 1298 reject_low 19 ALIGNMENT 35 Y12-2k22.p1k chr05 85 21 448788 448852 C 65 86.15 1298 reject_low 17 ALIGNMENT 381 Y12-2k22.p1k chr04 387 1022 803637 804276 F 636 87.89 1298 reject_low 20 ALIGNMENT 498 Y12-2k22.q1k chr13 946 135 200105 200915 C 812 88.18 1171 reject_low 18 ALIGNMENT 470 Y12-2k22.q1k chr16 120 946 805963 806788 F 827 86.70 1171 reject_low 23 ALIGNMENT 207 Y12-2k22.p1k chr01 955 393 164849 165414 C 563 79.93 1298 reject_low 27 ALIGNMENT 207 Y12-2k22.p1k chr04 393 955 1096512 1097077 F 563 79.93 1298 reject_low 7 ALIGNMENT 0 Y12-2k22.p1k chr02 121 386 221595 221779 F 266 0.00 1298 reject_low 1 ALIGNMENT 503 Y12-2k22.q1k chr13 946 120 187938 188763 C 827 88.03 1171 reject_low 8 ALIGNMENT 35 Y12-2k22.p1k chr10 21 79 478426 478484 F 59 88.14 1298 reject_low 12 ALIGNMENT 207 Y12-2k22.p1k chr12 955 393 480584 481149 C 563 79.93 1298 reject_low 14 ALIGNMENT 64 Y12-2k22.p1k chr02 21 120 221501 221594 F 100 93.00 1298 reject_low 1 ALIGNMENT 500 Y12-2k22.q1k chr13 120 946 374022 374847 F 827 87.91 1171 reject_low 10 ALIGNMENT 579 Y12-2k22.q1k chr07 946 36 539538 540447 C 911 89.13 1171 reject_low 2 ALIGNMENT 503 Y12-2k22.q1k chr05 120 946 493817 494642 F 827 88.03 1171 reject_low 9 ALIGNMENT 35 Y12-2k22.p1k chr02 21 85 260035 260099 F 65 86.15 1298 reject_low 29 ALIGNMENT 183 Y12-2k22.p1k chr08 955 452 548214 548720 C 504 79.76 1298 reject_low 30 ALIGNMENT 81 Y12-2k22.p1k chr08 548 393 548737 548893 C 156 85.90 1298 reject_low 31 ALIGNMENT 182 Y12-2k22.p1k chr16 892 393 809310 809812 C 500 80.00 1298 reject_low 23 ALIGNMENT 35 Y12-2k22.p1k chr16 79 21 810039 810097 C 59 88.14 1298 reject_low 23 ALIGNMENT 498 Y12-2k22.q1k chr15 946 135 121476 122286 C 812 88.18 1171 reject_low 11 ALIGNMENT 457 Y12-2k22.q1k chr10 855 120 476244 476976 C 736 88.45 1171 reject_low 26 ALIGNMENT 204 Y12-2k22.p1k chr15 393 955 118452 119017 F 563 79.75 1298 reject_low 11 ALIGNMENT 354 Y12-2k22.p1k chr14 1028 393 101140 101779 C 636 86.48 1298 reject_low 21 ALIGNMENT 0 Y12-2k22.p1k chr02 86 392 260100 260319 F 307 0.00 1298 reject_low 29 ALIGNMENT 207 Y12-2k22.p1k chr10 393 955 473127 473692 F 563 79.93 1298 reject_low 4 ALIGNMENT 35 Y12-2k22.p1k chr08 85 21 549114 549178 C 65 86.15 1298 reject_low 30,31 ALIGNMENT 498 Y12-2k22.q1k chr16 946 135 60225 61035 C 812 88.18 1171 reject_low 25 ALIGNMENT 0 Y12-2k22.p1k chr05 392 86 448568 448787 C 307 0.00 1298 reject_low 17 ALIGNMENT 204 Y12-2k22.p1k chr05 955 393 497101 497666 C 563 79.75 1298 reject_low 9 ALIGNMENT 198 Y12-2k22.p1k chr02 393 955 260320 260885 F 563 79.40 1298 reject_low 29 ALIGNMENT 35 Y12-2k22.p1k chr16 21 85 844873 844937 F 65 86.15 1298 reject_low 19 ALIGNMENT 0 Y12-2k22.p1k chr08 392 86 548894 549113 C 307 0.00 1298 reject_low 31 ALIGNMENT 35 Y12-2k22.p1k chr13 21 85 196796 196860 F 65 86.15 1298 reject_low 18 ALIGNMENT 512 Y12-2k22.q1k chr15 875 37 598662 599497 C 839 88.32 1171 reject_low 22 ALIGNMENT 465 Y12-2k22.q1k chr12 969 120 596893 597742 C 850 86.00 1171 reject_low 13 ALIGNMENT 576 Y12-2k22.q1k chr10 946 36 481735 482644 C 911 89.02 1171 reject_low 4,12 ALIGNMENT 503 Y12-2k22.q1k chr16 946 120 848185 849010 C 827 88.03 1171 reject_low 19 ALIGNMENT 498 Y12-2k22.q1k chr05 135 946 444733 445543 F 812 88.18 1171 reject_low 17 ALIGNMENT 0 Y12-2k22.p1k chr16 86 392 844938 845157 F 307 0.00 1298 reject_low 19 ALIGNMENT 207 Y12-2k22.p1k chr07 393 955 536514 537079 F 563 79.93 1298 reject_low 2 ALIGNMENT 503 Y12-2k22.q1k chr04 946 120 1099536 1100361 C 827 88.03 1171 reject_low 7 ALIGNMENT 0 Y12-2k22.p1k chr13 386 121 362180 362364 C 266 0.00 1298 accept_trans 0 ALIGNMENT 393 Y12-2k22.p1k chr02 387 1022 221780 222419 F 636 88.52 1298 reject_low 1 ALIGNMENT 61 Y12-2k22.p1k chr13 120 21 362365 362458 C 100 92.00 1298 accept_trans 0 ALIGNMENT 185 Y12-2k22.p1k chr12 393 894 651572 652076 F 502 80.08 1298 reject_low 5 ALIGNMENT 542 Y12-2k22.q1k chr04 36 842 987957 988760 F 807 90.46 1171 reject_low 6 ALIGNMENT 987 Y12-2k23.q1k chr08 38 1159 231843 232963 F 1122 96.70 1252 accept 0 ALIGNMENT 940 Y12-2k23.p1k chr08 1066 30 235697 236733 C 1037 97.01 1123 accept 0 ALIGNMENT 1013 Y12-2k24.q1k chr04 1168 36 1476422 1477545 C 1133 97.18 1173 accept 0 ALIGNMENT 945 Y12-2k24.p1k chr04 16 1115 1472553 1473657 F 1100 96.55 1121 accept 0 ALIGNMENT 779 Y12-2l02.q1k chr12 6 1088 168587 169678 F 1083 92.34 1342 accept 0 ALIGNMENT 758 Y12-2l03.q1k chr15 48 950 860564 861456 F 903 96.23 1391 accept 0 ALIGNMENT 1027 Y12-2l05.q1k chr15 1270 32 936869 938113 C 1239 95.64 1388 accept 0 ALIGNMENT 0 Y12-2l05.q1k chr15 249 62 938120 938119 C 188 0.00 1388 reject_low 1 ALIGNMENT 22 Y12-2l05.q1k chr15 284 250 938085 938119 C 35 88.57 1388 reject_low 1 ALIGNMENT 20 Y12-2l05.q1k chr15 60 32 937863 937891 C 29 89.66 1388 reject_low 2 ALIGNMENT 0 Y12-2l05.q1k chr15 879 61 937864 937863 C 819 0.00 1388 reject_low 2 ALIGNMENT 599 Y12-2l05.p1k chr15 261 959 934002 934693 F 699 96.42 1328 accept 0 ALIGNMENT 0 Y12-2l05.q1k chr15 879 285 938086 938085 C 595 0.00 1388 reject_low 1 ALIGNMENT 984 Y12-2l07.p1k chr16 1214 15 156880 158075 C 1200 95.83 1239 accept 0 ALIGNMENT 1028 Y12-2l07.q1k chr16 30 1226 154124 155329 F 1197 96.57 1241 accept 0 ALIGNMENT 0 Y12-2l08.p1k chr16 592 800 7275 7274 F 209 0.00 1206 reject_low 14 ALIGNMENT 0 Y12-2l08.p1k chr07 911 909 1083257 1083270 C 3 0.00 1206 reject_low 8 ALIGNMENT 444 Y12-2l08.p1k chr09 903 261 438700 439346 C 643 91.45 1206 reject_low 2 ALIGNMENT 402 Y12-2l08.p1k chr06 261 921 5249 5913 F 661 88.80 1206 reject_low 3 ALIGNMENT 231 Y12-2l08.p1k chr07 260 591 499 833 F 332 92.17 1206 reject_low 15 ALIGNMENT 221 Y12-2l08.p1k chr04 591 261 1524556 1524889 C 331 91.24 1206 reject_low 16 ALIGNMENT 215 Y12-2l08.p1k chr05 591 261 569543 569875 C 331 90.94 1206 reject_low 18 ALIGNMENT 0 Y12-2l08.p1k chr03 800 592 315728 315727 C 209 0.00 1206 reject_low 12 ALIGNMENT 240 Y12-2l08.p1k chr15 591 260 1083866 1084200 C 332 93.07 1206 reject_low 13 ALIGNMENT 953 Y12-2l08.q1k chr13 1206 36 11139 12299 C 1171 96.07 1285 accept 0 ALIGNMENT 235 Y12-2l08.p1k chr10 259 591 7484 7819 F 333 92.49 1206 reject_low 11 ALIGNMENT 0 Y12-2l08.p1k chr09 592 800 7836 7835 F 209 0.00 1206 reject_low 10 ALIGNMENT 235 Y12-2l08.p1k chr09 259 591 7501 7836 F 333 92.49 1206 reject_low 10 ALIGNMENT 240 Y12-2l08.p1k chr16 260 591 6941 7275 F 332 93.07 1206 reject_low 14 ALIGNMENT 22 Y12-2l08.p1k chr07 949 912 1083218 1083256 C 38 86.84 1206 reject_low 8 ALIGNMENT 203 Y12-2l08.p1k chr12 261 591 11804 12137 F 331 90.03 1206 reject_low 19 ALIGNMENT 397 Y12-2l08.p1k chr13 261 903 6063 6704 F 643 89.42 1206 accept 0 ALIGNMENT 216 Y12-2l08.p1k chr12 591 261 1064226 1064559 C 331 90.94 1206 reject_low 17 ALIGNMENT 0 Y12-2l08.p1k chr05 800 592 569544 569543 C 209 0.00 1206 reject_low 18 ALIGNMENT 257 Y12-2l08.p1k chr05 448 852 6379 6786 F 405 90.12 1206 reject_low 9 ALIGNMENT 433 Y12-2l08.p1k chr08 260 930 5222 5894 F 671 90.16 1206 reject_low 1 ALIGNMENT 422 Y12-2l08.p1k chr14 261 903 7147 7791 F 643 90.51 1206 reject_low 4 ALIGNMENT 410 Y12-2l08.p1k chr04 261 903 623 1267 F 643 89.89 1206 reject_low 6 ALIGNMENT 0 Y12-2l08.p1k chr02 592 800 6659 6658 F 209 0.00 1206 reject_low 20 ALIGNMENT 0 Y12-2l08.p1k chr15 800 592 1083867 1083866 C 209 0.00 1206 reject_low 13 ALIGNMENT 0 Y12-2l08.p1k chr07 592 800 833 832 F 209 0.00 1206 reject_low 15 ALIGNMENT 0 Y12-2l08.p1k chr05 272 447 6379 6378 F 176 0.00 1206 reject_low 9 ALIGNMENT 0 Y12-2l08.p1k chr12 800 592 1064227 1064226 C 209 0.00 1206 reject_low 17 ALIGNMENT 242 Y12-2l08.p1k chr03 591 261 315727 316060 C 331 93.35 1206 reject_low 12 ALIGNMENT 0 Y12-2l08.p1k chr04 800 592 1524557 1524556 C 209 0.00 1206 reject_low 16 ALIGNMENT 0 Y12-2l08.p1k chr12 592 800 12137 12136 F 209 0.00 1206 reject_low 19 ALIGNMENT 416 Y12-2l08.p1k chr10 903 261 744454 745098 C 643 90.20 1206 reject_low 5 ALIGNMENT 397 Y12-2l08.p1k chr02 903 261 812013 812654 C 643 89.42 1206 reject_low 7 ALIGNMENT 0 Y12-2l08.p1k chr10 592 800 7819 7818 F 209 0.00 1206 reject_low 11 ALIGNMENT 403 Y12-2l08.p1k chr07 908 263 1083271 1083919 C 646 89.47 1206 reject_low 8 ALIGNMENT 187 Y12-2l08.p1k chr02 260 591 6326 6659 F 332 88.25 1206 reject_low 20 ALIGNMENT 29 Y12-2l10.p1k chr12 526 494 3878 3910 C 33 96.97 1295 reject_low 17 ALIGNMENT 49 Y12-2l10.p1k chr16 325 381 944168 944224 F 57 96.49 1295 reject_low 19 ALIGNMENT 0 Y12-2l10.p1k chr02 547 527 4089 4078 C 21 0.00 1295 reject_low 13 ALIGNMENT 0 Y12-2l10.p1k chr02 651 604 4034 4033 C 48 0.00 1295 reject_low 13 ALIGNMENT 0 Y12-2l10.p1k chr12 493 474 3911 3906 C 20 0.00 1295 reject_low 17 ALIGNMENT 52 Y12-2l10.p1k chr16 548 603 944290 944345 F 56 98.21 1295 reject_low 19 ALIGNMENT 609 Y12-2l10.p1k chr12 208 923 1067125 1067832 F 716 95.95 1295 ambiguous_tel 10 ALIGNMENT 0 Y12-2l10.p1k chr08 527 547 558753 558742 F 21 0.00 1295 reject_low 16 ALIGNMENT 75 Y12-2l10.p1k chr12 21 100 1067017 1067097 F 80 98.75 1295 ambiguous_tel 10 ALIGNMENT 29 Y12-2l10.p1k chr02 526 494 4079 4111 C 33 96.97 1295 reject_low 13 ALIGNMENT 49 Y12-2l10.p1k chr12 381 325 3953 4009 C 57 96.49 1295 reject_low 17 ALIGNMENT 767 Y12-2l10.p1k chr12 21 923 1073601 1074495 F 903 95.90 1295 ambiguous_tel 4 ALIGNMENT 0 Y12-2l10.p1k chr12 101 156 1067098 1067093 F 56 0.00 1295 ambiguous_tel 10 ALIGNMENT 0 Y12-2l10.p1k chr12 443 382 3937 3952 C 62 0.00 1295 reject_low 17 ALIGNMENT 0 Y12-2l10.p1k chr08 62 324 558621 558620 F 263 0.00 1295 reject_low 16 ALIGNMENT 784 Y12-2l10.p1k chr09 923 21 4156 5051 C 903 96.57 1295 ambiguous_tel 1 ALIGNMENT 0 Y12-2l10.p1k chr08 547 527 3620 3609 C 21 0.00 1295 reject_low 15 ALIGNMENT 29 Y12-2l10.p1k chr12 526 494 9413 9445 C 33 96.97 1295 reject_low 18 ALIGNMENT 24 Y12-2l10.p1k chr06 473 444 2944 2973 C 30 93.33 1295 reject_low 14 ALIGNMENT 49 Y12-2l10.p1k chr12 381 325 9488 9544 C 57 96.49 1295 reject_low 18 ALIGNMENT 49 Y12-2l10.p1k chr02 381 325 4154 4210 C 57 96.49 1295 reject_low 13 ALIGNMENT 52 Y12-2l10.p1k chr02 603 548 4033 4088 C 56 98.21 1295 reject_low 13 ALIGNMENT 0 Y12-2l10.p1k chr12 493 474 9446 9441 C 20 0.00 1295 reject_low 18 ALIGNMENT 24 Y12-2l10.p1k chr13 473 444 3783 3812 C 30 93.33 1295 reject_low 20 ALIGNMENT 52 Y12-2l10.p1k chr08 603 548 3564 3619 C 56 98.21 1295 reject_low 15 ALIGNMENT 0 Y12-2l10.p1k chr02 324 62 4211 4210 C 263 0.00 1295 reject_low 13 ALIGNMENT 49 Y12-2l10.p1k chr06 381 325 2990 3046 C 57 96.49 1295 reject_low 14 ALIGNMENT 0 Y12-2l10.p1k chr12 443 382 9472 9487 C 62 0.00 1295 reject_low 18 ALIGNMENT 0 Y12-2l10.p1k chr06 493 474 2948 2943 C 20 0.00 1295 reject_low 14 ALIGNMENT 0 Y12-2l10.p1k chr05 156 101 4590 4585 C 56 0.00 1295 ambiguous_tel 11 ALIGNMENT 0 Y12-2l10.p1k chr16 382 443 944225 944240 F 62 0.00 1295 reject_low 19 ALIGNMENT 0 Y12-2l10.p1k chr16 604 651 944345 944344 F 48 0.00 1295 reject_low 19 ALIGNMENT 0 Y12-2l10.p1k chr02 493 474 4112 4107 C 20 0.00 1295 reject_low 13 ALIGNMENT 24 Y12-2l10.p1k chr08 473 444 3639 3668 C 30 93.33 1295 reject_low 15 ALIGNMENT 24 Y12-2l10.p1k chr12 473 444 3907 3936 C 30 93.33 1295 reject_low 17 ALIGNMENT 21 Y12-2l10.p1k chr05 192 157 4555 4589 C 36 88.89 1295 ambiguous_tel 11 ALIGNMENT 752 Y12-2l10.p1k chr16 923 21 3677 4571 C 903 95.35 1295 ambiguous_tel 9 ALIGNMENT 767 Y12-2l10.p1k chr04 21 923 1527400 1528294 F 903 95.90 1295 ambiguous_tel 3 ALIGNMENT 52 Y12-2l10.p1k chr12 603 548 9367 9422 C 56 98.21 1295 reject_low 18 ALIGNMENT 0 Y12-2l10.p1k chr12 651 604 9368 9367 C 48 0.00 1295 reject_low 18 ALIGNMENT 24 Y12-2l10.p1k chr02 473 444 4108 4137 C 30 93.33 1295 reject_low 13 ALIGNMENT 29 Y12-2l10.p1k chr08 526 494 3610 3642 C 33 96.97 1295 reject_low 15 ALIGNMENT 0 Y12-2l10.p1k chr12 547 527 9423 9412 C 21 0.00 1295 reject_low 18 ALIGNMENT 0 Y12-2l10.p1k chr12 193 207 1067129 1067124 F 15 0.00 1295 ambiguous_tel 10 ALIGNMENT 0 Y12-2l10.p1k chr08 324 62 3742 3741 C 263 0.00 1295 reject_low 15 ALIGNMENT 29 Y12-2l10.p1k chr06 526 494 2915 2947 C 33 96.97 1295 reject_low 14 ALIGNMENT 0 Y12-2l10.q1k chr12 62 549 412620 412619 F 488 0.00 1381 reject_low 12 ALIGNMENT 752 Y12-2l10.p1k chr05 21 923 572229 573123 F 903 95.35 1295 ambiguous_tel 6 ALIGNMENT 24 Y12-2l10.p1k chr08 444 473 558694 558723 F 30 93.33 1295 reject_low 16 ALIGNMENT 0 Y12-2l10.p1k chr13 324 62 3886 3885 C 263 0.00 1295 reject_low 20 ALIGNMENT 0 Y12-2l10.p1k chr12 324 62 9545 9544 C 263 0.00 1295 reject_low 18 ALIGNMENT 0 Y12-2l10.p1k chr05 207 193 4559 4554 C 15 0.00 1295 ambiguous_tel 11 ALIGNMENT 0 Y12-2l10.p1k chr13 493 474 3787 3782 C 20 0.00 1295 reject_low 20 ALIGNMENT 24 Y12-2l10.p1k chr12 473 444 9442 9471 C 30 93.33 1295 reject_low 18 ALIGNMENT 0 Y12-2l10.p1k chr12 651 604 3833 3832 C 48 0.00 1295 reject_low 17 ALIGNMENT 0 Y12-2l10.p1k chr08 474 493 558724 558719 F 20 0.00 1295 reject_low 16 ALIGNMENT 0 Y12-2l10.p1k chr12 547 527 3888 3877 C 21 0.00 1295 reject_low 17 ALIGNMENT 22 Y12-2l10.p1k chr12 157 192 1067094 1067128 F 36 88.89 1295 ambiguous_tel 10 ALIGNMENT 24 Y12-2l10.p1k chr16 444 473 944241 944270 F 30 93.33 1295 reject_low 19 ALIGNMENT 49 Y12-2l10.p1k chr08 381 325 3685 3741 C 57 96.49 1295 reject_low 15 ALIGNMENT 0 Y12-2l10.p1k chr16 527 547 944300 944289 F 21 0.00 1295 reject_low 19 ALIGNMENT 52 Y12-2l10.p1k chr12 603 548 3832 3887 C 56 98.21 1295 reject_low 17 ALIGNMENT 0 Y12-2l10.p1k chr13 547 527 3764 3753 C 21 0.00 1295 reject_low 20 ALIGNMENT 49 Y12-2l10.p1k chr13 381 325 3829 3885 C 57 96.49 1295 reject_low 20 ALIGNMENT 62 Y12-2l10.q1k chr12 550 638 412620 412708 F 89 95.51 1381 reject_low 12 ALIGNMENT 661 Y12-2l10.q1k chrm 35 951 28568 29478 F 917 95.86 1381 accept 0 ALIGNMENT 0 Y12-2l10.p1k chr16 62 324 944168 944167 F 263 0.00 1295 reject_low 19 ALIGNMENT 0 Y12-2l10.p1k chr08 493 474 3643 3638 C 20 0.00 1295 reject_low 15 ALIGNMENT 784 Y12-2l10.p1k chr10 923 21 4139 5034 C 903 96.57 1295 ambiguous_tel 2 ALIGNMENT 49 Y12-2l10.p1k chr13 603 548 3708 3763 C 56 96.43 1295 reject_low 20 ALIGNMENT 767 Y12-2l10.p1k chr15 21 923 1086565 1087459 F 903 95.90 1295 ambiguous_tel 5 ALIGNMENT 0 Y12-2l10.p1k chr13 443 382 3813 3828 C 62 0.00 1295 reject_low 20 ALIGNMENT 557 Y12-2l10.p1k chr05 923 208 3832 4558 C 716 93.58 1295 ambiguous_tel 11 ALIGNMENT 752 Y12-2l10.p1k chr14 923 21 3768 4662 C 903 95.35 1295 ambiguous_tel 8 ALIGNMENT 0 Y12-2l10.p1k chr06 443 382 2974 2989 C 62 0.00 1295 reject_low 14 ALIGNMENT 0 Y12-2l10.p1k chr12 324 62 4010 4009 C 263 0.00 1295 reject_low 17 ALIGNMENT 52 Y12-2l10.p1k chr06 603 548 2869 2924 C 56 98.21 1295 reject_low 14 ALIGNMENT 0 Y12-2l10.p1k chr06 651 604 2870 2869 C 48 0.00 1295 reject_low 14 ALIGNMENT 29 Y12-2l10.p1k chr16 494 526 944267 944299 F 33 96.97 1295 reject_low 19 ALIGNMENT 29 Y12-2l10.p1k chr08 494 526 558720 558752 F 33 96.97 1295 reject_low 16 ALIGNMENT 0 Y12-2l10.p1k chr06 324 62 3047 3046 C 263 0.00 1295 reject_low 14 ALIGNMENT 0 Y12-2l10.p1k chr08 443 382 3669 3684 C 62 0.00 1295 reject_low 15 ALIGNMENT 0 Y12-2l10.q1k chr12 639 810 412708 412707 F 172 0.00 1381 reject_low 12 ALIGNMENT 0 Y12-2l10.p1k chr08 604 651 558798 558797 F 48 0.00 1295 reject_low 16 ALIGNMENT 0 Y12-2l10.p1k chr16 474 493 944271 944266 F 20 0.00 1295 reject_low 19 ALIGNMENT 0 Y12-2l10.p1k chr02 443 382 4138 4153 C 62 0.00 1295 reject_low 13 ALIGNMENT 0 Y12-2l10.p1k chr08 382 443 558678 558693 F 62 0.00 1295 reject_low 16 ALIGNMENT 52 Y12-2l10.p1k chr08 548 603 558743 558798 F 56 98.21 1295 reject_low 16 ALIGNMENT 0 Y12-2l10.p1k chr08 651 604 3565 3564 C 48 0.00 1295 reject_low 15 ALIGNMENT 752 Y12-2l10.p1k chr07 21 923 1086306 1087200 F 903 95.35 1295 ambiguous_tel 7 ALIGNMENT 0 Y12-2l10.p1k chr13 651 604 3709 3708 C 48 0.00 1295 reject_low 20 ALIGNMENT 0 Y12-2l10.p1k chr06 547 527 2925 2914 C 21 0.00 1295 reject_low 14 ALIGNMENT 29 Y12-2l10.p1k chr13 526 494 3754 3786 C 33 96.97 1295 reject_low 20 ALIGNMENT 75 Y12-2l10.p1k chr05 100 21 4586 4666 C 80 98.75 1295 ambiguous_tel 11 ALIGNMENT 49 Y12-2l10.p1k chr08 325 381 558621 558677 F 57 96.49 1295 reject_low 16 ALIGNMENT 979 Y12-2l11.p1k chr14 16 1221 635965 637169 F 1206 95.02 1222 accept 0 ALIGNMENT 23 Y12-2l11.q1k vc_4 12 43 5821 5852 F 32 93.75 1277 reject_low 1 ALIGNMENT 1015 Y12-2l11.q1k chr14 1192 38 640508 641670 C 1155 96.10 1277 accept 0 ALIGNMENT 0 Y12-2l11.q1k vc_4 44 862 5852 5851 F 819 0.00 1277 reject_low 1 ALIGNMENT 0 Y12-2l12.q1k chr04 442 819 645219 645218 F 378 0.00 1276 reject_low 4 ALIGNMENT 0 Y12-2l12.q1k chr04 368 62 521041 521040 C 307 0.00 1276 reject_low 3 ALIGNMENT 0 Y12-2l12.q1k chr05 437 819 131148 131147 F 383 0.00 1276 reject_low 9 ALIGNMENT 0 Y12-2l12.q1k chr02 819 447 350821 350820 C 373 0.00 1276 reject_low 7 ALIGNMENT 60 Y12-2l12.q1k chr04 370 441 802726 802797 F 72 94.44 1276 reject_low 8 ALIGNMENT 61 Y12-2l12.q1k chr05 441 369 250285 250357 C 73 94.52 1276 reject_low 5 ALIGNMENT 0 Y12-2l12.q1k chr13 659 658 808534 808908 F 0 0.00 1276 accept 0 ALIGNMENT 0 Y12-2l12.q1k chr12 442 819 448722 448721 F 378 0.00 1276 reject_low 1 ALIGNMENT 0 Y12-2l12.q1k chr12 62 367 448649 448648 F 306 0.00 1276 reject_low 1 ALIGNMENT 0 Y12-2l12.q1k chr08 819 442 134315 134314 C 378 0.00 1276 reject_low 6 ALIGNMENT 61 Y12-2l12.q1k chr04 441 369 520968 521040 C 73 94.52 1276 reject_low 3 ALIGNMENT 0 Y12-2l12.q1k chr05 368 62 250358 250357 C 307 0.00 1276 reject_low 5 ALIGNMENT 0 Y12-2l12.q1k chr05 819 442 250286 250285 C 378 0.00 1276 reject_low 5 ALIGNMENT 61 Y12-2l12.q1k chr03 369 441 168295 168367 F 73 94.52 1276 reject_low 2 ALIGNMENT 554 Y12-2l12.q1k chr13 43 660 807924 808535 F 618 98.06 1276|0,2 accept 0 ALIGNMENT 0 Y12-2l12.q1k chr03 442 819 168367 168366 F 378 0.00 1276 reject_low 2 ALIGNMENT 61 Y12-2l12.q1k chr04 369 441 645147 645219 F 73 94.52 1276 reject_low 4 ALIGNMENT 61 Y12-2l12.q1k chr08 441 369 134314 134386 C 73 94.52 1276 reject_low 6 ALIGNMENT 0 Y12-2l12.q1k chr04 442 819 802797 802796 F 378 0.00 1276 reject_low 8 ALIGNMENT 0 Y12-2l12.q1k chr03 62 368 168295 168294 F 307 0.00 1276 reject_low 2 ALIGNMENT 0 Y12-2l12.q1k chr02 368 62 350898 350897 C 307 0.00 1276 reject_low 7 ALIGNMENT 0 Y12-2l12.q1k chr04 62 369 802726 802725 F 308 0.00 1276 reject_low 8 ALIGNMENT 62 Y12-2l12.q1k chr12 368 441 448649 448722 F 74 94.59 1276 reject_low 1 ALIGNMENT 55 Y12-2l12.q1k chr05 370 436 131082 131148 F 67 94.03 1276 reject_low 9 ALIGNMENT 0 Y12-2l12.q1k chr05 62 369 131082 131081 F 308 0.00 1276 reject_low 9 ALIGNMENT 0 Y12-2l12.q1k chr04 62 368 645147 645146 F 307 0.00 1276 reject_low 4 ALIGNMENT 0 Y12-2l12.q1k chr04 819 442 520969 520968 C 378 0.00 1276 reject_low 3 ALIGNMENT 54 Y12-2l12.q1k chr02 446 369 350820 350897 C 78 89.74 1276 reject_low 7 ALIGNMENT 863 Y12-2l12.p1k chr13 993 19 813350 814315 C 975 97.54 1287 accept 0 ALIGNMENT 378 Y12-2l12.q1k chr13 656 1200 808906 809444 F 545 91.74 1276|3,0 accept 0 ALIGNMENT 0 Y12-2l12.q1k chr08 368 62 134387 134386 C 307 0.00 1276 reject_low 6 ALIGNMENT 1009 Y12-2l13.q1k chr15 1220 37 998620 999805 C 1184 95.95 1296 accept_chi 0 ALIGNMENT 863 Y12-2l13.p1k chr07 30 1072 980783 981814 F 1043 95.88 1283 accept_chi 1 ALIGNMENT 1044 Y12-2l14.q1k chr13 36 1268 658046 659293 F 1233 96.03 1280 accept 0 ALIGNMENT 929 Y12-2l14.p1k chr13 1023 17 661124 662128 C 1007 98.01 1278 accept 0 ALIGNMENT 228 Y12-2l15.p1k chr08 610 63 143056 143601 C 548 78.47 1302 accept_chi 1 ALIGNMENT 0 Y12-2l15.q1k chr04 844 358 140262 140261 C 487 0.00 1306 reject_low 2 ALIGNMENT 23 Y12-2l15.q1k chr04 78 31 140540 140587 C 48 85.42 1306 reject_low 2 ALIGNMENT 1001 Y12-2l15.q1k chr05 1220 29 16125 17319 C 1192 95.47 1306 accept_chi 0 ALIGNMENT 0 Y12-2l15.q1k chr04 148 79 140470 140539 C 70 0.00 1306 reject_low 2 ALIGNMENT 31 Y12-2l15.q1k chr04 357 149 140261 140469 C 209 73.21 1306 reject_low 2 ALIGNMENT 928 Y12-2l16.q1k chr14 40 1111 401577 402660 F 1072 96.46 1260 accept 0 ALIGNMENT 905 Y12-2l18.p1k chr15 1050 14 797650 798686 C 1037 97.30 1214 accept 0 ALIGNMENT 1018 Y12-2l18.q1k chr15 37 1197 792770 793945 F 1161 97.07 1228 accept 0 ALIGNMENT 932 Y12-2l19.q1k chr04 32 1249 1224335 1225544 F 1218 93.60 1290 accept 0 ALIGNMENT 62 Y12-2l19.p1k chr04 25 179 232152 232309 F 155 81.94 1175 reject_low 1 ALIGNMENT 448 Y12-2l19.p1k chr04 1114 352 1227394 1228152 C 763 87.68 1175 accept 0 ALIGNMENT 979 Y12-2l20.q1k chr04 35 1280 1219322 1220578 F 1246 94.22 1280 accept 0 ALIGNMENT 859 Y12-2l20.p1k chr04 1182 21 1223522 1224671 C 1162 93.63 1204 accept 0 ALIGNMENT 920 Y12-2l21.p1k chr05 1083 28 199582 200633 C 1056 97.73 1173 accept 0 ALIGNMENT 956 Y12-2l21.q1k chr05 42 1178 195922 197059 F 1137 95.60 1209 accept 0 ALIGNMENT 953 Y12-2l22.q1k chr16 1156 35 512508 513633 C 1122 96.79 1201 accept 0 ALIGNMENT 922 Y12-2l22.p1k chr16 17 1065 507892 508933 F 1049 97.52 1181 accept 0 ALIGNMENT 867 Y12-2l23.p1k chr16 16 1042 655047 656065 F 1027 96.98 1145 accept 0 ALIGNMENT 964 Y12-2l23.q1k chr16 1131 36 658001 659087 C 1096 97.26 1177 accept 0 ALIGNMENT 814 Y12-2l24.q1k chr02 36 1158 263921 265031 F 1123 93.05 1182 ambiguous_trans 8 ALIGNMENT 575 Y12-2l24.q1k chr04 770 36 987558 988292 C 735 94.56 1182 ambiguous_trans 24 ALIGNMENT 788 Y12-2l24.q1k chr12 1128 36 215575 216658 C 1093 92.96 1182 ambiguous_trans_ua 10 ALIGNMENT 788 Y12-2l24.q1k chr13 1128 36 373190 374273 C 1093 92.96 1182 ambiguous_trans 11 ALIGNMENT 928 Y12-2l24.q1k chr02 36 1158 225384 226494 F 1123 96.44 1182 ambiguous_trans 1 ALIGNMENT 817 Y12-2l24.q1k chr15 36 1158 599163 600273 F 1123 93.14 1182 ambiguous_trans 6 ALIGNMENT 638 Y12-2l24.q1k chr16 1128 36 851119 852202 C 1093 88.38 1182 ambiguous_trans 12 ALIGNMENT 0 Y12-2l24.q1k chr04 814 771 987559 987558 C 44 0.00 1182 ambiguous_trans 24 ALIGNMENT 614 Y12-2l24.q1k chr15 36 1023 122050 123034 F 988 89.27 1182 ambiguous_trans 20 ALIGNMENT 909 Y12-2l24.q1k chr07 36 1128 540112 541195 F 1093 96.52 1182 ambiguous_trans 3 ALIGNMENT 620 Y12-2l24.q1k chr01 1023 36 160831 161815 C 988 89.57 1182 ambiguous_trans 16 ALIGNMENT 614 Y12-2l24.q1k chr16 36 1023 60799 61783 F 988 89.27 1182 ambiguous_trans 21 ALIGNMENT 918 Y12-2l24.q1k chr13 1158 36 357465 358575 C 1123 96.26 1182 ambiguous_trans 2 ALIGNMENT 613 Y12-2l24.q1k chr12 36 862 655172 655998 F 827 93.11 1182 ambiguous_trans 22 ALIGNMENT 614 Y12-2l24.q1k chr13 36 1023 200679 201663 F 988 89.27 1182 ambiguous_trans 19 ALIGNMENT 639 Y12-2l24.q1k chr04 36 960 1211038 1211961 F 925 91.46 1182 ambiguous_trans 15 ALIGNMENT 885 Y12-2l24.p1k chr05 25 1013 427945 428926 F 989 97.57 1146 accept 0 ALIGNMENT 635 Y12-2l24.q1k chr13 36 1128 188512 189595 F 1093 88.20 1182 ambiguous_trans 13 ALIGNMENT 816 Y12-2l24.q1k chr07 1158 36 817859 818969 C 1123 93.23 1182 ambiguous_trans 7 ALIGNMENT 900 Y12-2l24.q1k chr10 36 1128 482309 483392 F 1093 96.25 1182 ambiguous_trans 4 ALIGNMENT 635 Y12-2l24.q1k chr16 36 1128 848759 849842 F 1093 88.20 1182 ambiguous_trans 14 ALIGNMENT 891 Y12-2l24.q1k chr14 1128 36 97098 98181 C 1093 95.97 1182 ambiguous_trans 5 ALIGNMENT 590 Y12-2l24.q1k chr10 36 1023 476725 477709 F 988 88.46 1182 ambiguous_trans 23 ALIGNMENT 614 Y12-2l24.q1k chr05 1023 36 443985 444969 C 988 89.37 1182 ambiguous_trans 17 ALIGNMENT 788 Y12-2l24.q1k chr05 1128 36 492985 494068 C 1093 92.96 1182 ambiguous_trans 9 ALIGNMENT 614 Y12-2l24.q1k chr12 1023 36 476567 477551 C 988 89.37 1182 ambiguous_trans 18 ALIGNMENT 547 Y12-2l24.q1k chr16 1023 36 805230 806214 C 988 87.04 1182 ambiguous_trans 25 ALIGNMENT 728 Y12-2m02.q1k chr04 914 46 1465989 1466842 C 869 96.89 1398 accept 0 ALIGNMENT 738 Y12-2m06.p1k chr12 113 1099 462366 463335 F 987 93.21 1263 accept 1 ALIGNMENT 1057 Y12-2m06.q1k chr12 1286 29 465341 466615 C 1258 95.47 1290 accept 0,1 ALIGNMENT 738 Y12-2m06.p1k chr12 113 1099 453229 454198 F 987 93.21 1263 accept 0 ALIGNMENT 1053 Y12-2m06.q1k chr12 1204 29 456293 457478 C 1176 97.02 1290 reject_low 2 ALIGNMENT 865 Y12-2m07.q1k chr11 28 1131 567432 568534 F 1104 93.66 1431 accept 0 ALIGNMENT 588 Y12-2m08.p1k chr14 258 956 60852 61539 F 699 96.57 1281 accept 0 ALIGNMENT 85 Y12-2m08.q1k chr15 1181 975 93630 93844 C 207 82.13 1374 reject_low 1 ALIGNMENT 980 Y12-2m08.q1k chr14 1213 34 63771 64963 C 1180 95.59 1374 accept 0 ALIGNMENT 74 Y12-2m08.q1k chr15 552 434 94284 94402 C 119 88.24 1374 reject_low 1 ALIGNMENT 0 Y12-2m08.q1k chr15 433 62 94403 94402 C 372 0.00 1374 reject_low 1 ALIGNMENT 0 Y12-2m08.q1k chr15 974 553 93845 94283 C 422 0.00 1374 reject_low 1 ALIGNMENT 995 Y12-2m10.q1k chr02 1141 33 400912 402028 C 1109 97.29 1352 accept 0 ALIGNMENT 963 Y12-2m10.p1k chr02 24 1177 397878 399032 F 1154 95.75 1185 accept 0 ALIGNMENT 984 Y12-2m12.q1k chr02 1230 38 636805 638008 C 1193 95.39 1271 accept 0 ALIGNMENT 986 Y12-2m12.p1k chr02 17 1196 631937 633114 F 1180 96.02 1205 accept 0 ALIGNMENT 901 Y12-2m13.p1k chr15 1048 18 984311 985339 C 1031 96.99 1244 accept 0 ALIGNMENT 971 Y12-2m13.q1k chr15 34 1240 981339 982558 F 1207 94.95 1380 accept 0 ALIGNMENT 1071 Y12-2m14.q1k chr13 36 1263 436633 437865 F 1228 96.50 1305 accept 0 ALIGNMENT 982 Y12-2m14.p1k chr13 1175 23 441763 442909 C 1153 96.27 1200 accept 0 ALIGNMENT 39 Y12-2m15.q1k chr06 742 627 28253 28368 C 116 78.45 1386 reject_low 2 ALIGNMENT 76 Y12-2m15.q1k chr16 407 41 931728 932094 C 367 74.11 1386 reject_low 1 ALIGNMENT 728 Y12-2m15.p1k chr02 43 1102 797426 798475 F 1060 91.04 1243 accept 0 ALIGNMENT 996 Y12-2m15.q1k chr02 1220 41 800044 801239 C 1180 95.93 1386 accept 0 ALIGNMENT 0 Y12-2m15.q1k chr16 898 408 931729 931728 C 491 0.00 1386 reject_low 1 ALIGNMENT 0 Y12-2m15.q1k chr06 626 62 28369 28368 C 565 0.00 1386 reject_low 2 ALIGNMENT 0 Y12-2m15.q1k chr06 898 743 28254 28253 C 156 0.00 1386 reject_low 2 ALIGNMENT 832 Y12-2m17.p1k chr08 16 1038 202375 203388 F 1023 95.60 1243 accept 0 ALIGNMENT 942 Y12-2m17.q1k chr08 1117 40 206130 207218 C 1078 96.38 1378 accept 0 ALIGNMENT 936 Y12-2m18.q1k chr07 28 1125 462913 464026 F 1098 96.08 1279 accept 0 ALIGNMENT 948 Y12-2m18.p1k chr07 1067 19 465696 466742 C 1049 97.81 1204 accept 0 ALIGNMENT 830 Y12-2m20.p1k chr16 1178 55 588201 589294 C 1124 93.51 1178 accept 0 ALIGNMENT 937 Y12-2m20.q1k chr16 38 1155 585011 586128 F 1118 95.44 1353 accept 0 ALIGNMENT 0 Y12-2m20.p1k chr16 74 803 589326 589325 F 730 0.00 1178 reject_low 1 ALIGNMENT 41 Y12-2m20.p1k chr16 24 73 589276 589326 F 50 98.00 1178 reject_low 1 ALIGNMENT 881 Y12-2m21.p1k chr12 56 1121 968327 969383 F 1066 95.59 1159 accept 0 ALIGNMENT 931 Y12-2m21.q1k chr12 1118 36 972387 973486 C 1083 96.86 1257 accept 0 ALIGNMENT 850 Y12-2m23.p1k chr16 1056 53 766699 767691 C 1004 96.81 1163 accept 0 ALIGNMENT 943 Y12-2m23.q1k chr16 40 1159 763953 765084 F 1120 95.27 1209 accept 0 ALIGNMENT 927 Y12-2m24.q1k chr13 38 1137 738390 739486 F 1100 96.45 1145 accept 0 ALIGNMENT 771 Y12-2m24.p1k chr13 932 33 742140 743028 C 900 96.67 1215 accept 0 ALIGNMENT 888 Y12-2n01.q1k chr02 7 1019 457079 458090 F 1013 97.04 1256 accept 0 ALIGNMENT 221 Y12-2n01.p1k chr02 698 324 461165 461540 C 375 87.73 1200 accept 0 ALIGNMENT 288 Y12-2n04.q1k chr04 642 169 894187 894645 C 474 89.66 1725 accept 0 ALIGNMENT 790 Y12-2n07.q1k chr12 1 972 752277 753255 F 972 94.96 1301 accept 0 ALIGNMENT 614 Y12-2n08.p1k chr16 1002 264 549612 550339 C 739 96.21 1272 accept 0 ALIGNMENT 929 Y12-2n08.q1k chr16 40 1111 545429 546512 F 1072 96.55 1343 accept 0 ALIGNMENT 25 Y12-2n09.q1k chr15 607 550 650916 650973 C 58 81.03 1397 reject_bad_break 0 ALIGNMENT 125 Y12-2n09.q1k chr15 410 25 651115 651477 C 386 82.38 1397 reject_bad_break 0 ALIGNMENT 0 Y12-2n09.q1k chr15 549 411 650974 651114 C 139 0.00 1397 reject_bad_break 0 ALIGNMENT 947 Y12-2n11.p1k chr07 18 1089 299331 300389 F 1072 97.57 1261 accept 0 ALIGNMENT 1015 Y12-2n11.q1k chr07 1246 36 300787 302008 C 1211 95.54 1274 accept 0 ALIGNMENT 882 Y12-2n12.p1k chr11 1157 21 305280 306431 C 1137 93.49 1184 accept_chi 1 ALIGNMENT 969 Y12-2n12.q1k chr04 1259 40 327622 328847 C 1220 94.34 1279 accept_chi 0 ALIGNMENT 978 Y12-2n13.p1k chr12 1110 29 454053 455134 C 1082 97.32 1209 reject_low 1 ALIGNMENT 910 Y12-2n13.q1k chr12 38 1122 467116 468205 F 1085 95.67 1270 reject_low 2 ALIGNMENT 910 Y12-2n13.q1k chr12 38 1122 457979 459068 F 1085 95.67 1270 accept 0 ALIGNMENT 978 Y12-2n13.p1k chr12 1110 29 463190 464271 C 1082 97.32 1209 accept 0 ALIGNMENT 995 Y12-2n14.q1k chr15 35 1176 541964 543121 F 1142 96.58 1264 accept 0 ALIGNMENT 0 Y12-2n14.q1k chr04 62 650 209088 209087 F 589 0.00 1264 reject_low 1 ALIGNMENT 0 Y12-2n14.q1k chr04 683 885 209119 209118 F 203 0.00 1264 reject_low 1 ALIGNMENT 880 Y12-2n14.p1k chr15 1049 31 546270 547275 C 1019 97.55 1236 accept 0 ALIGNMENT 23 Y12-2n14.q1k chr04 651 682 209088 209119 F 32 90.62 1264 reject_low 1 ALIGNMENT 956 Y12-2n16.q1k chr16 1206 38 885969 887149 C 1169 94.53 1316 accept 0 ALIGNMENT 951 Y12-2n17.q1k chr15 1167 39 646949 648085 C 1129 96.19 1317 accept 0 ALIGNMENT 906 Y12-2n17.p1k chr15 22 1195 643875 645036 F 1174 94.29 1201 accept 0 ALIGNMENT 922 Y12-2n18.p1k chr12 23 1082 440496 441543 F 1060 97.08 1215 accept 0 ALIGNMENT 1007 Y12-2n18.q1k chr12 1240 33 444976 446189 C 1208 95.28 1333 accept 0 ALIGNMENT 808 Y12-2n19.q1k chr05 992 37 46257 47219 C 956 96.13 1267 accept 0 ALIGNMENT 950 Y12-2n19.p1k chr05 18 1125 43549 44651 F 1108 95.94 1187 accept 0 ALIGNMENT 886 Y12-2n20.q1k chr08 40 1147 119709 120819 F 1108 94.40 1332 accept 0 ALIGNMENT 672 Y12-2n20.p1k chr08 1103 265 122920 123758 C 839 94.16 1186 accept 0 ALIGNMENT 986 Y12-2n21.q1k chr10 35 1143 625848 626962 F 1109 97.39 1203 accept 0 ALIGNMENT 637 Y12-2n21.p1k chr10 1019 289 629845 630569 C 731 96.58 1204 accept 0 ALIGNMENT 0 Y12-2n22.q1k chr07 878 62 53171 53170 C 817 0.00 1204 reject_low 4 ALIGNMENT 0 Y12-2n22.q1k chr10 887 62 150107 150106 C 826 0.00 1204 reject_low 5 ALIGNMENT 0 Y12-2n22.q1k chr09 878 62 169491 169490 C 817 0.00 1204 reject_low 2 ALIGNMENT 23 Y12-2n22.q1k chr02 879 918 780426 780465 F 40 90.00 1204 reject_low 1 ALIGNMENT 1030 Y12-2n22.q1k chr09 35 1192 55929 57093 F 1158 97.06 1204 accept 0 ALIGNMENT 20 Y12-2n22.q1k chr10 915 888 150079 150106 C 28 92.86 1204 reject_low 5 ALIGNMENT 21 Y12-2n22.q1k chr14 895 920 70027 70052 F 26 100.00 1204 reject_low 3 ALIGNMENT 0 Y12-2n22.q1k chr14 62 894 70027 70026 F 833 0.00 1204 reject_low 3 ALIGNMENT 20 Y12-2n22.q1k chr07 918 879 53131 53170 C 40 87.50 1204 reject_low 4 ALIGNMENT 21 Y12-2n22.q1k chr09 919 879 169450 169490 C 41 87.80 1204 reject_low 2 ALIGNMENT 0 Y12-2n22.q1k chr02 62 878 780426 780425 F 817 0.00 1204 reject_low 1 ALIGNMENT 829 Y12-2n22.p1k chr09 1040 25 59391 60403 C 1016 94.98 1171 accept 0 ALIGNMENT 919 Y12-2n23.p1k chr16 19 1069 256695 257731 F 1051 97.43 1144 accept 0 ALIGNMENT 995 Y12-2n23.q1k chr16 1135 38 259797 260893 C 1098 97.18 1137 accept 0 ALIGNMENT 439 Y12-2o03.q1k chr14 917 61 681132 681972 C 857 86.23 1426 accept 0 ALIGNMENT 37 Y12-2o03.q1k chr03 722 606 243165 243280 C 117 79.49 1426 reject_low 1 ALIGNMENT 686 Y12-2o04.q1k chr12 56 1067 366136 367122 F 1012 92.19 1353 accept 0 ALIGNMENT 350 Y12-2o09.q1k chr04 539 52 494731 495212 C 488 91.80 1435 accept 0 ALIGNMENT 285 Y12-2o09.p1k chr04 269 839 489333 489899 F 571 86.16 1281 accept 0 ALIGNMENT 603 Y12-2o11.p1k chr12 1150 267 113721 114591 C 884 91.52 1172 accept 0 ALIGNMENT 632 Y12-2o11.q1k chr12 48 782 109839 110563 F 735 96.60 1430 accept 0 ALIGNMENT 669 Y12-2o12.p1k chr12 277 1139 707519 708368 F 863 94.55 1186 accept 0 ALIGNMENT 562 Y12-2o12.q1k chr12 809 32 710769 711549 C 778 93.19 1272 accept 0 ALIGNMENT 0 Y12-2o13.q1k chr08 646 647 542948 542939 F 2 0.00 1389 ambiguous_tel 1 ALIGNMENT 26 Y12-2o13.q1k chr08 648 713 542940 543003 F 66 83.33 1389 ambiguous_tel 1 ALIGNMENT 185 Y12-2o13.q1k chr15 356 52 29783 30087 C 305 87.21 1389 reject_low 3 ALIGNMENT 486 Y12-2o13.q1k chr08 49 645 542353 542947 F 597 94.64 1389 ambiguous_tel 1 ALIGNMENT 0 Y12-2o13.q1k chr15 489 357 29784 29783 C 133 0.00 1389 reject_low 3 ALIGNMENT 26 Y12-2o13.q1k chr01 648 713 222329 222392 F 66 83.33 1389 ambiguous_tel 0 ALIGNMENT 0 Y12-2o13.q1k chr09 489 411 24306 24305 C 79 0.00 1389 reject_low 2 ALIGNMENT 0 Y12-2o13.q1k chr01 646 647 222337 222328 F 2 0.00 1389 ambiguous_tel 0 ALIGNMENT 275 Y12-2o13.q1k chr09 410 52 24305 24663 C 359 92.48 1389 reject_low 2 ALIGNMENT 486 Y12-2o13.q1k chr01 49 645 221742 222336 F 597 94.64 1389 ambiguous_tel 0 ALIGNMENT 643 Y12-2o14.p1k chr14 817 18 367099 367908 C 800 94.62 1119 accept 0 ALIGNMENT 883 Y12-2o14.q1k chr14 37 1158 361784 362904 F 1122 93.94 1234 accept 0 ALIGNMENT 894 Y12-2o16.q1k chr04 33 1096 635531 636581 F 1064 95.58 1235 accept 0 ALIGNMENT 942 Y12-2o16.p1k chr04 1082 22 638904 639959 C 1061 97.93 1165 accept 0 ALIGNMENT 1075 Y12-2o17.q1k chr12 40 1302 465209 466472 F 1263 95.25 1319 reject_low 1 ALIGNMENT 1075 Y12-2o17.q1k chr12 40 1302 456072 457335 F 1263 95.25 1319 accept 0 ALIGNMENT 633 Y12-2o17.p1k chr12 789 74 451419 452128 C 716 97.49 1159 reject_low 2 ALIGNMENT 301 Y12-2o17.p1k chr12 419 74 489754 490096 C 346 96.82 1159 reject_low 3 ALIGNMENT 0 Y12-2o17.p1k chr12 786 420 489755 489754 C 367 0.00 1159 reject_low 3 ALIGNMENT 758 Y12-2o17.p1k chr12 1056 74 460280 461265 C 983 94.30 1159 accept 0 ALIGNMENT 998 Y12-2o18.q1k chr04 28 1205 222351 223532 F 1178 95.84 1222 accept 0 ALIGNMENT 923 Y12-2o18.p1k chr04 1092 23 225766 226818 C 1070 96.92 1164 accept 0 ALIGNMENT 787 Y12-2o19.p1k chr10 924 22 325778 326673 C 903 97.56 1191 accept 0 ALIGNMENT 983 Y12-2o19.q1k chr10 38 1282 321828 323081 F 1245 94.30 1282 accept 0 ALIGNMENT 0 Y12-2o20.q1k chr08 430 798 475779 475778 F 369 0.00 1221 reject_low 1 ALIGNMENT 0 Y12-2o20.q1k chr08 62 352 475703 475702 F 291 0.00 1221 reject_low 1 ALIGNMENT 77 Y12-2o20.q1k chr08 353 429 475703 475779 F 77 100.00 1221 reject_low 1 ALIGNMENT 899 Y12-2o20.q1k chr04 35 1197 1075146 1076291 F 1163 94.41 1221 accept 0 ALIGNMENT 716 Y12-2o21.p1k chr12 1143 168 712525 713502 C 976 93.03 1143 accept 0 ALIGNMENT 25 Y12-2o21.q1k chr12 35 59 708662 708686 F 25 100.00 1274 accept 0 ALIGNMENT 0 Y12-2o21.q1k chr12 60 59 708687 708701 F 0 0.00 1274 accept 0 ALIGNMENT 949 Y12-2o21.q1k chr12 60 1244 708702 709877 F 1185 94.60 1274 accept 0 ALIGNMENT 0 Y12-2o21.p1k chr15 939 302 678380 678379 C 638 0.00 1143 reject_low 1 ALIGNMENT 92 Y12-2o21.p1k chr15 1128 940 678192 678379 C 189 85.19 1143 reject_low 1 ALIGNMENT 0 Y12-2o22.q1k chr06 94 62 31730 31729 C 33 0.00 1235 reject_low 4 ALIGNMENT 699 Y12-2o22.p1k chr16 273 1066 737113 737904 F 794 97.10 1126 accept_chi 0 ALIGNMENT 0 Y12-2o22.q1k chr12 62 461 485696 485695 F 400 0.00 1235 reject_low 8 ALIGNMENT 0 Y12-2o22.q1k chr12 62 392 459606 459605 F 331 0.00 1235 reject_low 3 ALIGNMENT 119 Y12-2o22.q1k chr12 462 580 472464 472582 F 119 100.00 1235 reject_low 6 ALIGNMENT 0 Y12-2o22.q1k chr12 62 461 472464 472463 F 400 0.00 1235 reject_low 6 ALIGNMENT 0 Y12-2o22.q1k chr12 581 781 485814 485813 F 201 0.00 1235 reject_low 8 ALIGNMENT 360 Y12-2o22.q1k chr12 393 792 459606 460015 F 400 97.50 1235 reject_low 3 ALIGNMENT 0 Y12-2o22.q1k chr06 781 203 31623 31622 C 579 0.00 1235 reject_low 4 ALIGNMENT 0 Y12-2o22.q1k chr12 596 781 489481 489480 F 186 0.00 1235 reject_low 5 ALIGNMENT 0 Y12-2o22.q1k chr12 581 781 468930 468929 F 201 0.00 1235 reject_low 2 ALIGNMENT 119 Y12-2o22.q1k chr12 462 580 482044 482162 F 119 100.00 1235 reject_low 7 ALIGNMENT 773 Y12-2o22.q1k chr12 30 975 459243 460195 F 946 95.98 1235 accept_chi 1 ALIGNMENT 0 Y12-2o22.q1k chr12 581 781 472582 472581 F 201 0.00 1235 reject_low 6 ALIGNMENT 532 Y12-2o22.q1k chr12 30 580 468380 468930 F 551 99.82 1235 reject_low 2 ALIGNMENT 0 Y12-2o22.q1k chr12 62 461 489348 489347 F 400 0.00 1235 reject_low 5 ALIGNMENT 0 Y12-2o22.q1k chr12 581 781 482162 482161 F 201 0.00 1235 reject_low 7 ALIGNMENT 119 Y12-2o22.q1k chr12 462 580 485696 485814 F 119 100.00 1235 reject_low 8 ALIGNMENT 94 Y12-2o22.q1k chr06 202 95 31622 31729 C 108 98.15 1235 reject_low 4 ALIGNMENT 128 Y12-2o22.q1k chr12 462 595 489348 489481 F 134 98.51 1235 reject_low 5 ALIGNMENT 0 Y12-2o22.q1k chr12 62 461 482044 482043 F 400 0.00 1235 reject_low 7 ALIGNMENT 918 Y12-2o23.q1k chr10 1086 35 382381 383440 C 1052 96.86 1262 accept 0 ALIGNMENT 765 Y12-2o23.p1k chr10 79 1030 378853 379791 F 952 95.27 1175 accept 0 ALIGNMENT 0 Y12-2o23.q1k chr02 736 800 85084 85083 F 65 0.00 1262 reject_low 2 ALIGNMENT 84 Y12-2o23.q1k chr12 546 899 95936 96290 F 354 75.14 1262 reject_low 1 ALIGNMENT 57 Y12-2o23.q1k chr02 531 735 84880 85084 F 205 76.59 1262 reject_low 2 ALIGNMENT 0 Y12-2o23.q1k chr12 62 545 95936 95935 F 484 0.00 1262 reject_low 1 ALIGNMENT 0 Y12-2o23.q1k chr02 62 530 84880 84879 F 469 0.00 1262 reject_low 2 ALIGNMENT 0 Y12-2o24.p1k chr07 576 92 817397 817396 C 485 0.00 1130 reject_low 25 ALIGNMENT 40 Y12-2o24.p1k chr07 670 577 817303 817396 C 94 84.04 1130 reject_low 25 ALIGNMENT 0 Y12-2o24.p1k chr08 92 603 543653 543652 F 512 0.00 1130 reject_low 10 ALIGNMENT 31 Y12-2o24.p1k chr06 629 563 143869 143937 C 67 88.06 1130|1,0 reject_low 26 ALIGNMENT 157 Y12-2o24.p1k chr13 888 604 189752 190040 C 285 87.72 1130 reject_low 12 ALIGNMENT 114 Y12-2o24.p1k chr01 448 877 160124 160564 F 430 78.37 1130 reject_low 1 ALIGNMENT 0 Y12-2o24.p1k chr01 92 562 165827 165826 F 471 0.00 1130 reject_low 5 ALIGNMENT 149 Y12-2o24.p1k chr10 888 561 540680 541012 C 328 84.45 1130 reject_low 13 ALIGNMENT 0 Y12-2o24.p1k chr07 562 92 536102 536101 C 471 0.00 1130 reject_low 14 ALIGNMENT 146 Y12-2o24.p1k chr10 889 563 472376 472714 C 327 84.40 1130 reject_low 15 ALIGNMENT 0 Y12-2o24.p1k chr01 92 447 160124 160123 F 356 0.00 1130 reject_low 1 ALIGNMENT 0 Y12-2o24.p1k chr10 560 92 541013 541012 C 469 0.00 1130 reject_low 13 ALIGNMENT 157 Y12-2o24.p1k chr13 888 604 184170 184458 C 285 87.72 1130 reject_low 11 ALIGNMENT 121 Y12-2o24.p1k chr03 618 877 142803 143066 F 260 85.00 1130 reject_low 20 ALIGNMENT 0 Y12-2o24.p1k chr06 628 629 137906 143869 C 0 0.00 1130 reject_low 26 ALIGNMENT 160 Y12-2o24.p1k chr07 604 888 817441 817729 F 285 88.07 1130 reject_low 8 ALIGNMENT 122 Y12-2o24.p1k chr01 563 905 165827 166181 F 343 81.34 1130 reject_low 5 ALIGNMENT 0 Y12-2o24.p1k chr13 603 92 190041 190040 C 512 0.00 1130 reject_low 12 ALIGNMENT 0 Y12-2o24.p1k chr07 92 603 817441 817440 F 512 0.00 1130 reject_low 8 ALIGNMENT 147 Y12-2o24.p1k chr07 890 563 535762 536101 C 328 84.45 1130 reject_low 14 ALIGNMENT 820 Y12-2o24.p1k chr02 1012 24 326956 327932 C 989 97.17 1130 accept 0 ALIGNMENT 55 Y12-2o24.p1k chr06 888 573 137908 138229 C 316 75.95 1130 reject_low 22 ALIGNMENT 46 Y12-2o24.p1k chr10 573 670 541019 541117 F 98 84.69 1130 reject_low 24 ALIGNMENT 0 Y12-2o24.p1k chr14 92 560 96608 96607 F 469 0.00 1130 reject_low 2 ALIGNMENT 151 Y12-2o24.p1k chr03 559 893 124127 124467 F 335 84.48 1130 reject_low 3 ALIGNMENT 0 Y12-2o24.p1k chr14 92 562 102192 102191 F 471 0.00 1130 reject_low 4 ALIGNMENT 0 Y12-2o24.p1k chr10 562 92 472715 472714 C 471 0.00 1130 reject_low 15 ALIGNMENT 145 Y12-2o24.p1k chr16 563 888 850625 850962 F 326 84.36 1130 reject_low 17 ALIGNMENT 160 Y12-2o24.p1k chr15 888 604 600403 600691 C 285 88.07 1130 reject_low 9 ALIGNMENT 0 Y12-2o24.p1k chr06 572 92 143857 143856 C 481 0.00 1130 reject_low 23 ALIGNMENT 55 Y12-2o24.p1k chr06 888 573 143535 143856 C 316 75.95 1130 reject_low 23 ALIGNMENT 0 Y12-2o24.p1k chr16 92 562 856213 856212 F 471 0.00 1130 reject_low 18 ALIGNMENT 107 Y12-2o24.p1k chr06 776 604 158470 158641 C 173 90.17 1130 reject_low 21 ALIGNMENT 0 Y12-2o24.p1k chr02 603 92 265450 265449 C 512 0.00 1130 reject_low 7 ALIGNMENT 145 Y12-2o24.p1k chr10 888 563 483549 483886 C 326 84.36 1130 reject_low 16 ALIGNMENT 0 Y12-2o24.p1k chr13 92 603 372739 372738 F 512 0.00 1130 reject_low 19 ALIGNMENT 0 Y12-2o24.p1k chr06 830 777 158471 158470 C 54 0.00 1130 reject_low 21 ALIGNMENT 0 Y12-2o24.p1k chr15 92 561 980254 980253 F 470 0.00 1130 reject_low 6 ALIGNMENT 0 Y12-2o24.p1k chr10 92 572 541019 541018 F 481 0.00 1130 reject_low 24 ALIGNMENT 0 Y12-2o24.p1k chr10 671 830 541117 541116 F 160 0.00 1130 reject_low 24 ALIGNMENT 0 Y12-2o24.p1k chr06 562 92 143938 143937 C 471 0.00 1130 reject_low 26 ALIGNMENT 139 Y12-2o24.p1k chr16 563 888 856213 856550 F 326 83.74 1130 reject_low 18 ALIGNMENT 0 Y12-2o24.p1k chr16 92 562 850625 850624 F 471 0.00 1130 reject_low 17 ALIGNMENT 166 Y12-2o24.p1k chr14 561 888 96608 96941 F 328 86.28 1130 reject_low 2 ALIGNMENT 0 Y12-2o24.p1k chr03 92 617 142803 142802 F 526 0.00 1130 reject_low 20 ALIGNMENT 0 Y12-2o24.p1k chr03 92 558 124127 124126 F 467 0.00 1130 reject_low 3 ALIGNMENT 0 Y12-2o24.p1k chr06 572 92 138230 138229 C 481 0.00 1130 reject_low 22 ALIGNMENT 96 Y12-2o24.p1k chr06 878 627 137665 137907 C 252 83.73 1130|0,2 reject_low 26 ALIGNMENT 155 Y12-2o24.p1k chr15 562 889 980254 980587 F 328 85.06 1130 reject_low 6 ALIGNMENT 0 Y12-2o24.p1k chr10 562 92 483887 483886 C 471 0.00 1130 reject_low 16 ALIGNMENT 1024 Y12-2o24.q1k chr02 36 1138 323274 324372 F 1103 98.28 1178 accept 0 ALIGNMENT 157 Y12-2o24.p1k chr08 604 888 543653 543941 F 285 87.72 1130 reject_low 10 ALIGNMENT 0 Y12-2o24.p1k chr07 830 671 817304 817303 C 160 0.00 1130 reject_low 25 ALIGNMENT 166 Y12-2o24.p1k chr14 563 889 102192 102524 F 327 86.24 1130 reject_low 4 ALIGNMENT 160 Y12-2o24.p1k chr02 888 604 265161 265449 C 285 88.07 1130 reject_low 7 ALIGNMENT 0 Y12-2o24.p1k chr15 603 92 600692 600691 C 512 0.00 1130 reject_low 9 ALIGNMENT 137 Y12-2o24.p1k chr13 604 888 372739 373033 F 285 85.61 1130 reject_low 19 ALIGNMENT 0 Y12-2o24.p1k chr13 603 92 184459 184458 C 512 0.00 1130 reject_low 11 ALIGNMENT 0 Y12-2o24.p1k chr06 603 92 158642 158641 C 512 0.00 1130 reject_low 21 ALIGNMENT 922 Y12-2p03.q1k chr15 33 1153 199162 200297 F 1121 95.81 1286 accept 0 ALIGNMENT 534 Y12-2p03.p1k chr15 901 257 204502 205138 C 645 95.81 1263 accept 0 ALIGNMENT 678 Y12-2p04.p1k chr04 1139 262 957466 958338 C 878 94.31 1140 accept 0 ALIGNMENT 978 Y12-2p04.q1k chr04 34 1165 954569 955701 F 1132 95.49 1326 accept 0 ALIGNMENT 601 Y12-2p05.q1k chr09 3 946 37925 38842 F 944 90.04 1235 accept 0 ALIGNMENT 104 Y12-2p06.p1k chr13 31 208 45130 45304 F 178 87.64 1331 accept 0 ALIGNMENT 200 Y12-2p07.q1k chr07 856 201 779922 780557 C 656 79.27 1554 accept 0 ALIGNMENT 458 Y12-2p11.q1k chr10 29 637 327460 328062 F 609 93.10 1365 accept 0 ALIGNMENT 479 Y12-2p11.p1k chr10 913 279 331899 332531 C 635 91.97 1250 accept 0 ALIGNMENT 256 Y12-2p12.q1k chr03 23 529 640 1148 F 507 86.79 1295 ambiguous_tel 18 ALIGNMENT 275 Y12-2p12.q1k chr12 23 529 11626 12136 F 507 88.17 1295 ambiguous_tel 12 ALIGNMENT 279 Y12-2p12.q1k chr16 71 529 6813 7274 F 459 89.76 1295 ambiguous_tel 14 ALIGNMENT 276 Y12-2p12.q1k chr14 32 594 6975 7540 F 563 86.50 1295 ambiguous_tel 5 ALIGNMENT 260 Y12-2p12.q1k chr13 482 23 923535 924003 C 460 88.91 1295 ambiguous_tel 17 ALIGNMENT 303 Y12-2p12.q1k chr10 23 529 7305 7818 F 507 89.94 1295 ambiguous_tel 9 ALIGNMENT 336 Y12-2p12.q1k chr10 684 32 744612 745265 C 653 87.14 1295 ambiguous_tel 3 ALIGNMENT 316 Y12-2p12.q1k chr03 529 23 315728 316235 C 507 90.53 1295 ambiguous_tel 7 ALIGNMENT 277 Y12-2p12.q1k chr15 529 71 1083867 1084328 C 459 89.54 1295 ambiguous_tel 15 ALIGNMENT 585 Y12-2p12.p1k chr08 982 271 9479 10182 C 712 94.80 1207 accept 0 ALIGNMENT 303 Y12-2p12.q1k chr09 23 529 7322 7835 F 507 89.94 1295 ambiguous_tel 8 ALIGNMENT 274 Y12-2p12.q1k chr07 24 529 319 832 F 506 87.75 1295 ambiguous_tel 13 ALIGNMENT 244 Y12-2p12.q1k chr02 23 529 6139 6658 F 507 86.00 1295 ambiguous_tel 20 ALIGNMENT 304 Y12-2p12.q1k chr13 71 736 5935 6599 F 666 85.14 1295 ambiguous_tel 2 ALIGNMENT 0 Y12-2p12.q1k chr08 496 446 556142 556141 C 51 0.00 1295 ambiguous_tel 21 ALIGNMENT 300 Y12-2p12.q1k chr04 529 23 1524557 1525072 C 507 89.35 1295 ambiguous_tel 10 ALIGNMENT 259 Y12-2p12.q1k chr14 529 23 783227 783740 C 507 86.79 1295 ambiguous_tel 16 ALIGNMENT 322 Y12-2p12.q1k chr07 662 23 1083458 1084098 C 640 87.03 1295 ambiguous_tel 4 ALIGNMENT 223 Y12-2p12.q1k chr08 445 71 556141 556513 C 375 89.60 1295 ambiguous_tel 21 ALIGNMENT 330 Y12-2p12.q1k chr05 529 23 569544 570055 C 507 91.12 1295 ambiguous_tel 6 ALIGNMENT 362 Y12-2p12.q1k chr09 736 23 438806 439530 C 714 86.41 1295 ambiguous_tel 1 ALIGNMENT 252 Y12-2p12.q1k chr01 34 529 350 852 F 496 86.69 1295 ambiguous_tel 19 ALIGNMENT 282 Y12-2p12.q1k chr15 23 529 389 897 F 507 88.36 1295 ambiguous_tel 11 ALIGNMENT 403 Y12-2p18.q1k chr12 56 642 456818 457388 F 587 91.82 1384 accept 0 ALIGNMENT 403 Y12-2p18.q1k chr12 56 642 465955 466525 F 587 91.82 1384 accept 1 ALIGNMENT 514 Y12-2p20.q1k chr15 843 26 1005198 1005993 C 818 90.22 1119 accept 0 ALIGNMENT 884 Y12-3a01.q1k chr12 1114 31 455775 456850 C 1084 94.56 1371 reject_low 1 ALIGNMENT 885 Y12-3a01.q1k chr12 1211 31 464817 465987 C 1181 92.80 1371 accept 0 ALIGNMENT 416 Y12-3a02.p1k chr15 272 927 433291 433938 F 656 90.09 1412 accept 0 ALIGNMENT 79 Y12-3a03.q1k vc_3 141 347 2531 2734 F 207 81.64 1672 reject_vc 1 ALIGNMENT 20 Y12-3a03.q1k vc_5 141 118 5025 5048 C 24 95.83 1672 reject_low 7 ALIGNMENT 79 Y12-3a03.q1k vc_5 141 347 2398 2601 F 207 81.64 1672 reject_vc 2 ALIGNMENT 79 Y12-3a03.q1k vc_7 347 141 2524 2727 C 207 81.64 1672 reject_vc 3 ALIGNMENT 59 Y12-3a03.q1k chr02 117 34 444781 444865 C 84 90.48 1672 reject_low 4 ALIGNMENT 79 Y12-3a03.q1k vc_1 141 347 2531 2734 F 207 81.64 1672 reject_vc 0 ALIGNMENT 20 Y12-3a03.q1k vc_1 141 118 2472 2495 C 24 95.83 1672 reject_low 5 ALIGNMENT 20 Y12-3a03.q1k vc_3 141 118 2472 2495 C 24 95.83 1672 reject_low 6 ALIGNMENT 0 Y12-3a07.p1k chr16 412 359 560913 560912 C 54 0.00 1554 ambiguous_trans_ua 27 ALIGNMENT 156 Y12-3a07.p1k chr12 274 569 215115 215418 F 296 86.49 1554 ambiguous_trans_ua 20 ALIGNMENT 80 Y12-3a07.p1k chr03 240 569 168595 168928 F 330 77.88 1554 ambiguous_trans_ua 25 ALIGNMENT 103 Y12-3a07.p1k chr03 518 274 149531 149773 C 245 83.27 1554 ambiguous_trans_ua 24 ALIGNMENT 179 Y12-3a07.p1k chr02 569 240 226624 226955 C 330 86.67 1554 ambiguous_trans 8 ALIGNMENT 174 Y12-3a07.p1k chr02 570 274 221039 221339 C 297 88.55 1554 ambiguous_trans 14 ALIGNMENT 179 Y12-3a07.p1k chr08 274 570 549340 549638 F 297 88.89 1554 ambiguous_trans 13 ALIGNMENT 0 Y12-3a07.p1k chr16 532 518 560811 560810 C 15 0.00 1554 ambiguous_trans_ua 27 ALIGNMENT 166 Y12-3a07.p1k chr03 570 274 151517 151814 C 297 87.54 1554 ambiguous_trans_ua 17 ALIGNMENT 186 Y12-3a07.p1k chr16 569 239 560478 560810 C 331 87.31 1554 ambiguous_trans_ua 3 ALIGNMENT 32 Y12-3a07.p1k chr16 517 413 560810 560912 C 105 80.95 1554 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-3a07.p1k chr15 532 441 594643 594642 C 92 0.00 1554 ambiguous_trans_ua 26 ALIGNMENT 179 Y12-3a07.p1k chr02 570 274 259575 259873 C 297 88.89 1554 ambiguous_trans 12 ALIGNMENT 156 Y12-3a07.p1k chr10 569 274 472377 472680 C 296 86.49 1554 ambiguous_trans 19 ALIGNMENT 122 Y12-3a07.p1k chr03 308 570 142814 143078 F 263 84.41 1554 ambiguous_trans_ua 23 ALIGNMENT 182 Y12-3a07.p1k chr03 240 569 124131 124462 F 330 86.97 1554 ambiguous_trans_ua 6 ALIGNMENT 156 Y12-3a07.p1k chr04 570 274 1095761 1096065 C 297 86.53 1554 ambiguous_trans 18 ALIGNMENT 170 Y12-3a07.p1k chr04 569 274 1175308 1175605 C 296 87.84 1554 ambiguous_trans_ua 16 ALIGNMENT 46 Y12-3a07.p1k chr15 440 324 594642 594759 C 117 82.05 1554 ambiguous_trans_ua 26 ALIGNMENT 184 Y12-3a07.p1k chr15 575 274 594815 595118 C 302 89.07 1554 ambiguous_trans 0 ALIGNMENT 183 Y12-3a07.p1k chr15 239 569 980254 980586 F 331 87.01 1554 ambiguous_trans_ua 5 ALIGNMENT 185 Y12-3a07.p1k chr14 240 569 102192 102523 F 330 87.27 1554 ambiguous_trans 4 ALIGNMENT 182 Y12-3a07.p1k chr15 569 274 600403 600700 C 296 89.19 1554 ambiguous_trans 11 ALIGNMENT 159 Y12-3a07.p1k chr16 240 569 850625 850962 F 330 84.85 1554 ambiguous_trans 15 ALIGNMENT 182 Y12-3a07.p1k chr07 274 569 817432 817729 F 296 89.19 1554 ambiguous_trans 9 ALIGNMENT 181 Y12-3a07.p1k chr08 237 569 116413 116747 F 333 86.79 1554 ambiguous_trans_ua 1 ALIGNMENT 183 Y12-3a07.p1k chr07 571 238 535213 535548 C 334 86.83 1554 ambiguous_trans_ua 2 ALIGNMENT 136 Y12-3a07.p1k chr01 240 569 160239 160575 F 330 82.42 1554 ambiguous_trans 21 ALIGNMENT 182 Y12-3a07.p1k chr13 569 274 184170 184467 C 296 89.19 1554 ambiguous_trans 10 ALIGNMENT 180 Y12-3a07.p1k chr11 239 569 517094 517426 F 331 86.71 1554 ambiguous_trans_ua 7 ALIGNMENT 136 Y12-3a07.p1k chr01 240 569 165827 166163 F 330 82.42 1554 ambiguous_trans 22 ALIGNMENT 877 Y12-3a10.q1k chr12 38 1059 457298 458340 F 1022 96.38 1356 accept 0 ALIGNMENT 0 Y12-3a10.p1k chr12 461 152 490544 490543 C 310 0.00 1332 reject_low 3 ALIGNMENT 908 Y12-3a10.p1k chr12 1148 140 451878 452897 C 1009 97.13 1332 reject_low 2 ALIGNMENT 877 Y12-3a10.q1k chr12 38 1059 466435 467477 F 1022 96.38 1356 reject_low 1 ALIGNMENT 908 Y12-3a10.p1k chr12 1148 140 461015 462034 C 1009 97.13 1332 accept 0 ALIGNMENT 572 Y12-3a10.p1k chr12 1148 462 489846 490543 C 687 95.05 1332 reject_low 3 ALIGNMENT 234 Y12-3a13.q1k chr14 37 547 658615 659117 F 511 83.17 1675 accept 0 ALIGNMENT 991 Y12-3a14.q1k chr12 1185 40 270921 272075 C 1146 96.77 1367 accept 0 ALIGNMENT 861 Y12-3a14.p1k chr12 150 1214 267894 268961 F 1065 95.12 1379 accept 0 ALIGNMENT 997 Y12-3a15.q1k chr09 38 1156 48303 49437 F 1119 96.96 1339 accept 0 ALIGNMENT 25 Y12-3a17.p1k chr15 113 158 685153 685198 F 46 84.78 1502 accept 0 ALIGNMENT 1020 Y12-3a17.q1k chr15 1244 37 689669 690869 C 1208 96.27 1407 accept 0 ALIGNMENT 830 Y12-3a17.p1k chr15 276 1302 685316 686341 F 1027 95.13 1502 accept 0 ALIGNMENT 0 Y12-3a17.p1k chr15 159 275 685199 685315 F 117 0.00 1502 accept 0 ALIGNMENT 997 Y12-3a19.q1k chr04 37 1304 1058610 1059874 F 1268 93.85 1385 accept 0 ALIGNMENT 750 Y12-3a19.p1k chr10 270 1210 22052 23001 F 941 94.26 1433 ambiguous_tel 1 ALIGNMENT 712 Y12-3a21.p1k chr04 1223 270 855264 856216 C 954 92.56 1388 accept 0 ALIGNMENT 925 Y12-3a21.q1k chr04 35 1128 852322 853404 F 1094 96.80 1390 accept 0 ALIGNMENT 830 Y12-3a22.q1k chr02 1176 34 745916 747045 C 1143 93.44 1371 accept 0 ALIGNMENT 753 Y12-3b01.q1k chr12 870 35 451924 452761 C 836 97.01 1336 reject_low 1 ALIGNMENT 755 Y12-3b01.q1k chr12 934 35 460993 461898 C 900 95.11 1336 accept 0 ALIGNMENT 0 Y12-3b01.q1k chr12 220 62 490544 490543 C 159 0.00 1336 reject_low 2 ALIGNMENT 565 Y12-3b01.q1k chr12 870 221 489892 490543 C 650 96.00 1336 reject_low 2 ALIGNMENT 823 Y12-3b02.q1k chr01 1017 39 51031 52004 C 979 95.91 1391 accept 0 ALIGNMENT 936 Y12-3b03.q1k chr08 1105 37 195621 196703 C 1069 97.01 1374 accept 0 ALIGNMENT 703 Y12-3b03.p1k chr08 275 1131 189423 190277 F 857 94.87 1382 accept 0 ALIGNMENT 692 Y12-3b04.p1k chr13 273 1163 430782 431673 F 891 94.05 1335 accept 0 ALIGNMENT 902 Y12-3b04.q1k chr13 1075 38 433694 434722 C 1038 96.82 1455 accept 0 ALIGNMENT 311 Y12-3b05.p1k chr15 1098 685 92025 92441 C 414 92.51 1387 reject_low 1 ALIGNMENT 925 Y12-3b05.q1k chr14 35 1126 58181 59295 F 1092 96.15 1369 accept 0 ALIGNMENT 0 Y12-3b05.p1k chr15 684 302 92442 92441 C 383 0.00 1387 reject_low 1 ALIGNMENT 747 Y12-3b05.p1k chr14 1269 297 61778 62764 C 973 93.73 1387 accept 0 ALIGNMENT 677 Y12-3b06.p1k chr12 1183 260 456942 457869 C 924 92.10 1362 accept 0 ALIGNMENT 234 Y12-3b06.q1k chr12 35 275 490303 490543 F 241 99.17 1431 reject_low 2 ALIGNMENT 0 Y12-3b06.q1k chr12 276 721 490543 490542 F 446 0.00 1431 reject_low 2 ALIGNMENT 677 Y12-3b06.p1k chr12 1183 260 466079 467006 C 924 91.99 1362 accept 1 ALIGNMENT 950 Y12-3b06.q1k chr12 35 1209 452335 453503 F 1175 94.47 1431 accept 0 ALIGNMENT 950 Y12-3b06.q1k chr12 35 1209 461472 462640 F 1175 94.47 1431 accept 1 ALIGNMENT 202 Y12-3b07.q1k chr12 585 98 616539 617023 C 488 80.94 1439 accept 0 ALIGNMENT 53 Y12-3b08.p1k chr16 546 602 944168 944224 F 57 98.25 1326 reject_low 11 ALIGNMENT 52 Y12-3b08.p1k chr16 769 821 944290 944342 F 53 100.00 1326 reject_low 11 ALIGNMENT 727 Y12-3b08.p1k chr12 271 1228 1073630 1074595 F 958 92.48 1326 ambiguous_tel 2 ALIGNMENT 53 Y12-3b08.p1k chr12 602 546 3953 4009 C 57 98.25 1326 reject_low 14 ALIGNMENT 29 Y12-3b08.p1k chr12 379 413 1067094 1067128 F 35 94.29 1326 reject_low 9 ALIGNMENT 750 Y12-3b08.p1k chr10 1228 271 4039 5005 C 958 93.32 1326 ambiguous_tel 0 ALIGNMENT 52 Y12-3b08.p1k chr02 821 769 4036 4088 C 53 100.00 1326 reject_low 12 ALIGNMENT 53 Y12-3b08.p1k chr12 602 546 9488 9544 C 57 98.25 1326 reject_low 15 ALIGNMENT 29 Y12-3b08.p1k chr02 747 715 4079 4111 C 33 96.97 1326 reject_low 12 ALIGNMENT 0 Y12-3b08.p1k chr12 545 287 9545 9544 C 259 0.00 1326 reject_low 15 ALIGNMENT 0 Y12-3b08.p1k chr12 664 603 9472 9487 C 62 0.00 1326 reject_low 15 ALIGNMENT 860 Y12-3b08.q1k chr08 1054 38 560837 561836 C 1017 96.36 1421 reject_low 16 ALIGNMENT 53 Y12-3b08.p1k chr02 602 546 4154 4210 C 57 98.25 1326 reject_low 12 ALIGNMENT 0 Y12-3b08.p1k chr02 545 287 4211 4210 C 259 0.00 1326 reject_low 12 ALIGNMENT 0 Y12-3b08.p1k chr06 768 748 2925 2914 C 21 0.00 1326 reject_low 18 ALIGNMENT 675 Y12-3b08.p1k chr16 1093 271 3720 4542 C 823 94.29 1326 reject_low 7 ALIGNMENT 24 Y12-3b08.p1k chr08 665 694 558694 558723 F 30 93.33 1326 reject_low 16 ALIGNMENT 29 Y12-3b08.p1k chr12 747 715 3878 3910 C 33 96.97 1326 reject_low 14 ALIGNMENT 0 Y12-3b08.p1k chr08 768 748 3620 3609 C 21 0.00 1326 reject_low 13 ALIGNMENT 0 Y12-3b08.p1k chr08 748 768 558753 558742 F 21 0.00 1326 reject_low 16 ALIGNMENT 49 Y12-3b08.p1k chr13 821 769 3711 3763 C 53 98.11 1326 reject_low 17 ALIGNMENT 866 Y12-3b08.q1k chr12 1054 38 1076685 1077684 C 1017 96.56 1421 ambiguous_tel 2 ALIGNMENT 24 Y12-3b08.p1k chr06 694 665 2944 2973 C 30 93.33 1326 reject_low 18 ALIGNMENT 29 Y12-3b08.p1k chr06 747 715 2915 2947 C 33 96.97 1326 reject_low 18 ALIGNMENT 52 Y12-3b08.p1k chr12 821 769 9370 9422 C 53 100.00 1326 reject_low 15 ALIGNMENT 50 Y12-3b08.p1k chr12 271 322 1067046 1067097 F 52 100.00 1326 reject_low 9 ALIGNMENT 0 Y12-3b08.p1k chr08 695 714 558724 558719 F 20 0.00 1326 reject_low 16 ALIGNMENT 24 Y12-3b08.p1k chr16 665 694 944241 944270 F 30 93.33 1326 reject_low 11 ALIGNMENT 864 Y12-3b08.q1k chr08 38 1054 656 1655 F 1017 96.46 1421 reject_low 13 ALIGNMENT 0 Y12-3b08.p1k chr08 545 287 3742 3741 C 259 0.00 1326 reject_low 13 ALIGNMENT 765 Y12-3b08.q1k chr06 142 1054 2 897 F 913 96.28 1421 reject_low 18 ALIGNMENT 0 Y12-3b08.p1k chr02 664 603 4138 4153 C 62 0.00 1326 reject_low 12 ALIGNMENT 0 Y12-3b08.p1k chr16 287 545 944168 944167 F 259 0.00 1326 reject_low 11 ALIGNMENT 53 Y12-3b08.p1k chr08 546 602 558621 558677 F 57 98.25 1326 reject_low 16 ALIGNMENT 871 Y12-3b08.q1k chr05 37 1054 474 1474 F 1018 96.66 1421 reject_low 10 ALIGNMENT 52 Y12-3b08.p1k chr08 821 769 3567 3619 C 53 100.00 1326 reject_low 13 ALIGNMENT 712 Y12-3b08.p1k chr07 271 1228 1086335 1087300 F 958 91.96 1326 ambiguous_tel 4 ALIGNMENT 866 Y12-3b08.q1k chr15 1054 38 1089649 1090648 C 1017 96.56 1421 reject_low 6 ALIGNMENT 0 Y12-3b08.p1k chr08 714 695 3643 3638 C 20 0.00 1326 reject_low 13 ALIGNMENT 874 Y12-3b08.q1k chr10 37 1054 673 1673 F 1018 96.76 1421 ambiguous_tel 0 ALIGNMENT 29 Y12-3b08.p1k chr08 747 715 3610 3642 C 33 96.97 1326 reject_low 13 ALIGNMENT 713 Y12-3b08.p1k chr09 1093 271 4199 5022 C 823 95.87 1326 reject_low 5 ALIGNMENT 50 Y12-3b08.p1k chr05 322 271 4586 4637 C 52 100.00 1326 reject_low 10 ALIGNMENT 0 Y12-3b08.p1k chr12 545 287 4010 4009 C 259 0.00 1326 reject_low 14 ALIGNMENT 29 Y12-3b08.p1k chr13 747 715 3754 3786 C 33 96.97 1326 reject_low 17 ALIGNMENT 29 Y12-3b08.p1k chr12 747 715 9413 9445 C 33 96.97 1326 reject_low 15 ALIGNMENT 0 Y12-3b08.p1k chr12 323 378 1067098 1067093 F 56 0.00 1326 reject_low 9 ALIGNMENT 24 Y12-3b08.p1k chr12 694 665 9442 9471 C 30 93.33 1326 reject_low 15 ALIGNMENT 861 Y12-3b08.q1k chr12 38 1054 688 1687 F 1017 96.36 1421 reject_low 14 ALIGNMENT 53 Y12-3b08.p1k chr13 602 546 3829 3885 C 57 98.25 1326 reject_low 17 ALIGNMENT 860 Y12-3b08.q1k chr16 1054 38 946490 947489 C 1017 96.36 1421 reject_low 11 ALIGNMENT 0 Y12-3b08.p1k chr05 428 414 4559 4554 C 15 0.00 1326 reject_low 10 ALIGNMENT 52 Y12-3b08.p1k chr06 821 769 2872 2924 C 53 100.00 1326 reject_low 18 ALIGNMENT 0 Y12-3b08.p1k chr13 768 748 3764 3753 C 21 0.00 1326 reject_low 17 ALIGNMENT 0 Y12-3b08.p1k chr12 714 695 3911 3906 C 20 0.00 1326 reject_low 14 ALIGNMENT 0 Y12-3b08.p1k chr02 768 748 4089 4078 C 21 0.00 1326 reject_low 12 ALIGNMENT 0 Y12-3b08.p1k chr12 768 748 3888 3877 C 21 0.00 1326 reject_low 14 ALIGNMENT 855 Y12-3b08.q1k chr14 38 1054 579 1578 F 1017 96.17 1421 reject_low 8 ALIGNMENT 860 Y12-3b08.q1k chr07 1054 38 1089390 1090389 C 1017 96.36 1421 ambiguous_tel 4 ALIGNMENT 53 Y12-3b08.p1k chr08 602 546 3685 3741 C 57 98.25 1326 reject_low 13 ALIGNMENT 0 Y12-3b08.p1k chr16 603 664 944225 944240 F 62 0.00 1326 reject_low 11 ALIGNMENT 24 Y12-3b08.p1k chr02 694 665 4108 4137 C 30 93.33 1326 reject_low 12 ALIGNMENT 870 Y12-3b08.q1k chr02 38 1054 491 1490 F 1017 96.66 1421 reject_low 12 ALIGNMENT 861 Y12-3b08.q1k chr12 38 1054 6331 7330 F 1017 96.36 1421 reject_low 15 ALIGNMENT 712 Y12-3b08.p1k chr05 271 1228 572258 573223 F 958 91.96 1326 ambiguous_tel 3 ALIGNMENT 587 Y12-3b08.p1k chr12 429 1228 1067125 1067932 F 800 91.62 1326 reject_low 9 ALIGNMENT 690 Y12-3b08.p1k chr15 271 1093 1086594 1087416 F 823 94.90 1326 reject_low 6 ALIGNMENT 0 Y12-3b08.q1k chr06 62 141 2 1 F 80 0.00 1421 reject_low 18 ALIGNMENT 53 Y12-3b08.p1k chr06 602 546 2990 3046 C 57 98.25 1326 reject_low 18 ALIGNMENT 52 Y12-3b08.p1k chr08 769 821 558743 558795 F 53 100.00 1326 reject_low 16 ALIGNMENT 0 Y12-3b08.p1k chr12 664 603 3937 3952 C 62 0.00 1326 reject_low 14 ALIGNMENT 0 Y12-3b08.p1k chr08 287 545 558621 558620 F 259 0.00 1326 reject_low 16 ALIGNMENT 24 Y12-3b08.p1k chr08 694 665 3639 3668 C 30 93.33 1326 reject_low 13 ALIGNMENT 0 Y12-3b08.p1k chr08 664 603 3669 3684 C 62 0.00 1326 reject_low 13 ALIGNMENT 0 Y12-3b08.p1k chr06 664 603 2974 2989 C 62 0.00 1326 reject_low 18 ALIGNMENT 498 Y12-3b08.p1k chr05 1093 429 3875 4558 C 665 91.88 1326 reject_low 10 ALIGNMENT 29 Y12-3b08.p1k chr05 413 379 4555 4589 C 35 94.29 1326 reject_low 10 ALIGNMENT 0 Y12-3b08.p1k chr12 414 428 1067129 1067124 F 15 0.00 1326 reject_low 9 ALIGNMENT 0 Y12-3b08.p1k chr13 664 603 3813 3828 C 62 0.00 1326 reject_low 17 ALIGNMENT 24 Y12-3b08.p1k chr12 694 665 3907 3936 C 30 93.33 1326 reject_low 14 ALIGNMENT 0 Y12-3b08.p1k chr08 603 664 558678 558693 F 62 0.00 1326 reject_low 16 ALIGNMENT 874 Y12-3b08.q1k chr09 37 1054 690 1690 F 1018 96.76 1421 reject_low 5 ALIGNMENT 0 Y12-3b08.p1k chr06 545 287 3047 3046 C 259 0.00 1326 reject_low 18 ALIGNMENT 29 Y12-3b08.p1k chr08 715 747 558720 558752 F 33 96.97 1326 reject_low 16 ALIGNMENT 727 Y12-3b08.p1k chr04 271 1228 1527429 1528394 F 958 92.48 1326 ambiguous_tel 1 ALIGNMENT 0 Y12-3b08.p1k chr13 545 287 3886 3885 C 259 0.00 1326 reject_low 17 ALIGNMENT 0 Y12-3b08.p1k chr02 714 695 4112 4107 C 20 0.00 1326 reject_low 12 ALIGNMENT 0 Y12-3b08.p1k chr12 768 748 9423 9412 C 21 0.00 1326 reject_low 15 ALIGNMENT 861 Y12-3b08.q1k chr16 38 1054 488 1487 F 1017 96.36 1421 reject_low 7 ALIGNMENT 866 Y12-3b08.q1k chr12 1054 38 1070022 1071021 C 1017 96.56 1421 reject_low 9 ALIGNMENT 860 Y12-3b08.q1k chr05 1054 38 575313 576312 C 1017 96.36 1421 ambiguous_tel 3 ALIGNMENT 0 Y12-3b08.p1k chr05 378 323 4590 4585 C 56 0.00 1326 reject_low 10 ALIGNMENT 0 Y12-3b08.p1k chr13 714 695 3787 3782 C 20 0.00 1326 reject_low 17 ALIGNMENT 866 Y12-3b08.q1k chr04 1054 38 1530484 1531483 C 1017 96.56 1421 ambiguous_tel 1 ALIGNMENT 0 Y12-3b08.p1k chr16 748 768 944300 944289 F 21 0.00 1326 reject_low 11 ALIGNMENT 0 Y12-3b08.p1k chr06 714 695 2948 2943 C 20 0.00 1326 reject_low 18 ALIGNMENT 675 Y12-3b08.p1k chr14 1093 271 3811 4633 C 823 94.29 1326 reject_low 8 ALIGNMENT 0 Y12-3b08.p1k chr12 714 695 9446 9441 C 20 0.00 1326 reject_low 15 ALIGNMENT 861 Y12-3b08.q1k chr13 38 1054 672 1671 F 1017 96.36 1421 reject_low 17 ALIGNMENT 24 Y12-3b08.p1k chr13 694 665 3783 3812 C 30 93.33 1326 reject_low 17 ALIGNMENT 29 Y12-3b08.p1k chr16 715 747 944267 944299 F 33 96.97 1326 reject_low 11 ALIGNMENT 0 Y12-3b08.p1k chr16 695 714 944271 944266 F 20 0.00 1326 reject_low 11 ALIGNMENT 52 Y12-3b08.p1k chr12 821 769 3835 3887 C 53 100.00 1326 reject_low 14 ALIGNMENT 758 Y12-3b09.q1k chr13 35 1013 22684 23649 F 979 93.77 1404 accept 0 ALIGNMENT 570 Y12-3b09.p1k chr13 994 269 25607 26337 C 726 93.39 1359 accept 0 ALIGNMENT 0 Y12-3b10.p1k chr06 315 878 31729 31728 F 564 0.00 1360 reject_low 2 ALIGNMENT 811 Y12-3b10.p1k chr12 1151 148 458452 459474 C 1004 95.52 1360 accept 0 ALIGNMENT 993 Y12-3b10.q1k chr12 36 1128 455494 456598 F 1093 97.62 1350 accept 0 ALIGNMENT 94 Y12-3b10.p1k chr06 207 314 31622 31729 F 108 98.15 1360 reject_low 2 ALIGNMENT 0 Y12-3b10.p1k chr06 167 206 31622 31621 F 40 0.00 1360 reject_low 2 ALIGNMENT 811 Y12-3b10.p1k chr12 1151 148 467589 468611 C 1004 95.52 1360 accept 1 ALIGNMENT 993 Y12-3b10.q1k chr12 36 1128 464631 465735 F 1093 97.62 1350 accept 1 ALIGNMENT 819 Y12-3b11.p1k chr08 90 1082 38438 39434 F 993 94.96 1295 accept 0 ALIGNMENT 936 Y12-3b11.q1k chr08 1169 40 43319 44458 C 1130 95.40 1392 accept 0 ALIGNMENT 20 Y12-3b12.q1k chr02 35 67 221341 221373 F 33 93.94 1392 reject_low 2 ALIGNMENT 26 Y12-3b12.q1k chr13 67 35 357004 357036 C 33 100.00 1392 reject_low 1 ALIGNMENT 859 Y12-3b12.p1k chr03 1176 136 154720 155771 C 1041 95.87 1323 accept 0 ALIGNMENT 931 Y12-3b12.q1k chr03 68 1159 151896 152994 F 1092 96.79 1392 accept 0 ALIGNMENT 0 Y12-3b12.q1k chr13 918 68 357005 357004 C 851 0.00 1392 reject_low 1 ALIGNMENT 0 Y12-3b12.q1k chr02 68 918 221373 221372 F 851 0.00 1392 reject_low 2 ALIGNMENT 0 Y12-3b13.p1k chr04 167 592 118150 118149 F 426 0.00 1335 reject_low 1 ALIGNMENT 849 Y12-3b13.p1k chr04 148 1109 217554 218527 F 962 97.82 1335 accept 0 ALIGNMENT 339 Y12-3b13.p1k chr04 593 962 118150 118518 F 370 98.38 1335 reject_low 1 ALIGNMENT 947 Y12-3b13.q1k chr04 1121 28 220527 221628 C 1094 97.26 1365 accept 0 ALIGNMENT 949 Y12-3b14.q1k chr10 1144 47 311823 312934 C 1098 96.63 1351 accept_chi 0 ALIGNMENT 927 Y12-3b14.p1k chr07 80 1231 385968 387120 F 1152 94.27 1363 accept_chi 1 ALIGNMENT 585 Y12-3b14.p1k chr02 1251 84 660299 661468 C 1168 84.16 1363 reject_low 2 ALIGNMENT 0 Y12-3b15.q1k chr15 107 502 340292 340291 F 396 0.00 1349 reject_low 3 ALIGNMENT 73 Y12-3b15.q1k chr10 587 509 233851 233929 C 79 97.47 1349 reject_low 4 ALIGNMENT 0 Y12-3b15.q1k chr12 597 598 373996 374340 C 0 0.00 1349 accept 0 ALIGNMENT 0 Y12-3b15.q1k chr10 816 588 233852 233851 C 229 0.00 1349 reject_low 4 ALIGNMENT 0 Y12-3b15.q1k chr04 596 816 620049 620048 F 221 0.00 1349 reject_low 1 ALIGNMENT 0 Y12-3b15.q1k chr04 107 502 619957 619956 F 396 0.00 1349 reject_low 1 ALIGNMENT 0 Y12-3b15.q1k chr11 816 594 490601 490600 C 223 0.00 1349 reject_low 2 ALIGNMENT 319 Y12-3b15.q1k chr12 1105 596 373494 373997 C 510 90.20 1349|0,2 accept 0 ALIGNMENT 82 Y12-3b15.q1k chr15 503 584 340292 340373 F 82 100.00 1349 reject_low 3 ALIGNMENT 0 Y12-3b15.q1k chr05 583 816 492419 492418 F 234 0.00 1349 reject_low 5 ALIGNMENT 609 Y12-3b15.p1k chr12 114 1150 370062 371106 F 1037 86.98 1360 accept 0 ALIGNMENT 0 Y12-3b15.q1k chr10 508 107 233930 233929 C 402 0.00 1349 reject_low 4 ALIGNMENT 90 Y12-3b15.q1k chr04 503 595 619957 620049 F 93 98.92 1349 reject_low 1 ALIGNMENT 85 Y12-3b15.q1k chr11 593 503 490600 490690 C 91 97.80 1349 reject_low 2 ALIGNMENT 0 Y12-3b15.q1k chr05 107 509 492347 492346 F 403 0.00 1349 reject_low 5 ALIGNMENT 73 Y12-3b15.q1k chr05 510 582 492347 492419 F 73 100.00 1349 reject_low 5 ALIGNMENT 502 Y12-3b15.q1k chr12 598 38 374340 374901 C 561 97.68 1349|1,0 accept 0 ALIGNMENT 0 Y12-3b15.q1k chr15 585 816 340373 340372 F 232 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-3b15.q1k chr11 502 107 490691 490690 C 396 0.00 1349 reject_low 2 ALIGNMENT 706 Y12-3b16.p1k chr15 251 1075 367798 368636 F 825 96.48 1290 accept 0 ALIGNMENT 1018 Y12-3b16.q1k chr15 1294 32 371964 373238 C 1263 95.17 1370 accept 0 ALIGNMENT 726 Y12-3b17.p1k chr10 1109 131 486299 487303 C 979 92.85 1313 accept_chi 1 ALIGNMENT 950 Y12-3b17.q1k chr10 39 1102 471135 472208 F 1064 97.37 1350 accept_chi 0 ALIGNMENT 305 Y12-3b18.p1k chr09 419 751 246217 246549 F 333 99.40 1325 ambiguous_trans_ua 5 ALIGNMENT 0 Y12-3b18.p1k chr13 857 752 168350 168349 C 106 0.00 1325 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-3b18.p1k chr01 857 745 160247 160246 C 113 0.00 1325 ambiguous_trans 22 ALIGNMENT 0 Y12-3b18.p1k chr03 137 639 84626 84625 F 503 0.00 1325 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-3b18.p1k chr07 137 418 811452 811451 F 282 0.00 1325 ambiguous_trans 18 ALIGNMENT 0 Y12-3b18.p1k chr10 857 570 537833 537832 C 288 0.00 1325 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-3b18.p1k chr10 664 857 204224 204223 F 194 0.00 1325 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-3b18.p1k chr12 752 857 941520 941519 F 106 0.00 1325 ambiguous_trans 13 ALIGNMENT 1014 Y12-3b18.q1k chr03 29 1209 80122 81316 F 1181 96.61 1363 accept 0 ALIGNMENT 0 Y12-3b18.p1k chr10 742 857 538338 538337 F 116 0.00 1325 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-3b18.p1k chr03 752 857 85141 85140 F 106 0.00 1325 ambiguous_trans 15 ALIGNMENT 208 Y12-3b18.p1k chr01 744 419 165834 166163 C 326 90.49 1325 ambiguous_trans 23 ALIGNMENT 294 Y12-3b18.p1k chr10 751 419 203704 204035 C 333 98.50 1325 ambiguous_trans_ua 9 ALIGNMENT 0 Y12-3b18.p1k chr14 857 742 562045 562044 C 116 0.00 1325 ambiguous_trans_ua 19 ALIGNMENT 305 Y12-3b18.p1k chr05 419 751 62142 62474 F 333 99.40 1325 ambiguous_trans_ua 4 ALIGNMENT 0 Y12-3b18.p1k chr05 418 137 431819 431818 C 282 0.00 1325 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-3b18.p1k chr07 742 857 811773 811772 F 116 0.00 1325 ambiguous_trans 18 ALIGNMENT 0 Y12-3b18.p1k chr07 857 732 817419 817418 C 126 0.00 1325 ambiguous_trans 24 ALIGNMENT 0 Y12-3b18.p1k chr10 857 752 203705 203704 C 106 0.00 1325 ambiguous_trans_ua 9 ALIGNMENT 286 Y12-3b18.p1k chr12 418 751 946815 947147 F 334 97.60 1325 ambiguous_trans 11 ALIGNMENT 0 Y12-3b18.p1k chr01 417 137 160577 160576 C 281 0.00 1325 ambiguous_trans 22 ALIGNMENT 0 Y12-3b18.p1k chr13 418 137 168682 168681 C 282 0.00 1325 ambiguous_trans_ua 6 ALIGNMENT 285 Y12-3b18.p1k chr12 419 751 941189 941520 F 333 97.60 1325 ambiguous_trans 13 ALIGNMENT 286 Y12-3b18.p1k chr03 418 751 90436 90768 F 334 97.60 1325 ambiguous_trans 10 ALIGNMENT 0 Y12-3b18.p1k chr01 857 745 165835 165834 C 113 0.00 1325 ambiguous_trans 23 ALIGNMENT 0 Y12-3b18.p1k chr12 857 743 731680 731679 C 115 0.00 1325 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-3b18.p1k chr14 745 857 525056 525055 F 113 0.00 1325 ambiguous_trans 20 ALIGNMENT 0 Y12-3b18.p1k chr14 417 137 562367 562366 C 281 0.00 1325 ambiguous_trans_ua 19 ALIGNMENT 278 Y12-3b18.p1k chr14 741 418 562044 562366 C 324 97.84 1325 ambiguous_trans_ua 19 ALIGNMENT 0 Y12-3b18.p1k chr05 137 418 62142 62141 F 282 0.00 1325 ambiguous_trans_ua 4 ALIGNMENT 308 Y12-3b18.p1k chr08 751 419 389180 389512 C 333 99.70 1325 ambiguous_trans_ua 3 ALIGNMENT 290 Y12-3b18.p1k chr04 741 418 513695 514017 C 324 99.07 1325 ambiguous_trans 14 ALIGNMENT 0 Y12-3b18.p1k chr04 418 137 519644 519643 C 282 0.00 1325 ambiguous_trans 8 ALIGNMENT 0 Y12-3b18.p1k chr08 417 137 92097 92096 C 281 0.00 1325 ambiguous_trans_ua 1 ALIGNMENT 302 Y12-3b18.p1k chr13 751 419 168349 168681 C 333 99.10 1325 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-3b18.p1k chr03 731 857 84717 84716 F 127 0.00 1325 ambiguous_trans_ua 27 ALIGNMENT 49 Y12-3b18.p1k chr10 473 663 204036 204224 F 191 79.58 1325 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-3b18.p1k chr14 137 418 519164 519163 F 282 0.00 1325 ambiguous_trans 21 ALIGNMENT 0 Y12-3b18.p1k chr12 137 418 941189 941188 F 282 0.00 1325 ambiguous_trans 13 ALIGNMENT 298 Y12-3b18.p1k chr08 752 418 91762 92096 C 335 98.51 1325 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-3b18.p1k chr08 857 753 91763 91762 C 105 0.00 1325 ambiguous_trans_ua 1 ALIGNMENT 0 Y12-3b18.p1k chr12 752 857 947147 947146 F 106 0.00 1325 ambiguous_trans 11 ALIGNMENT 280 Y12-3b18.p1k chr07 418 728 817078 817387 F 311 99.36 1325 ambiguous_trans 17 ALIGNMENT 300 Y12-3b18.p1k chr15 751 418 704064 704397 C 334 98.80 1325 ambiguous_trans 7 ALIGNMENT 282 Y12-3b18.p1k chr03 419 751 84810 85141 F 333 97.30 1325 ambiguous_trans 15 ALIGNMENT 283 Y12-3b18.p1k chr10 419 741 538017 538338 F 323 98.45 1325 ambiguous_trans_ua 16 ALIGNMENT 268 Y12-3b18.p1k chr14 418 744 524729 525056 F 327 96.33 1325 ambiguous_trans 20 ALIGNMENT 293 Y12-3b18.p1k chr12 742 419 731679 732002 C 324 99.07 1325 ambiguous_trans_ua 12 ALIGNMENT 267 Y12-3b18.p1k chr14 419 744 519164 519490 F 326 96.32 1325 ambiguous_trans 21 ALIGNMENT 0 Y12-3b18.p1k chr10 451 137 537949 537948 C 315 0.00 1325 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-3b18.p1k chr07 137 417 817078 817077 F 281 0.00 1325 ambiguous_trans 17 ALIGNMENT 0 Y12-3b18.p1k chr03 137 417 90436 90435 F 281 0.00 1325 ambiguous_trans 10 ALIGNMENT 0 Y12-3b18.p1k chr15 857 752 704065 704064 C 106 0.00 1325 ambiguous_trans 7 ALIGNMENT 0 Y12-3b18.p1k chr03 752 857 90768 90767 F 106 0.00 1325 ambiguous_trans 10 ALIGNMENT 0 Y12-3b18.p1k chr09 752 857 246549 246548 F 106 0.00 1325 ambiguous_trans_ua 5 ALIGNMENT 42 Y12-3b18.p1k chr10 569 452 537832 537948 C 118 81.36 1325 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-3b18.p1k chr07 617 137 817533 817532 C 481 0.00 1325 ambiguous_trans 24 ALIGNMENT 31 Y12-3b18.p1k chr03 640 730 84626 84717 F 91 80.22 1325 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-3b18.p1k chr08 418 137 389513 389512 C 282 0.00 1325 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-3b18.p1k chr08 857 752 389181 389180 C 106 0.00 1325 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-3b18.p1k chr12 418 137 732003 732002 C 282 0.00 1325 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-3b18.p1k chr14 745 857 519490 519489 F 113 0.00 1325 ambiguous_trans 21 ALIGNMENT 0 Y12-3b18.p1k chr01 418 137 166164 166163 C 282 0.00 1325 ambiguous_trans 23 ALIGNMENT 0 Y12-3b18.p1k chr10 137 418 538017 538016 F 282 0.00 1325 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-3b18.p1k chr07 729 857 817387 817386 F 129 0.00 1325 ambiguous_trans 17 ALIGNMENT 0 Y12-3b18.p1k chr05 857 752 431487 431486 C 106 0.00 1325 ambiguous_trans_ua 2 ALIGNMENT 209 Y12-3b18.p1k chr01 744 418 160246 160576 C 327 90.52 1325 ambiguous_trans 22 ALIGNMENT 0 Y12-3b18.p1k chr10 418 137 204036 204035 C 282 0.00 1325 ambiguous_trans_ua 9 ALIGNMENT 280 Y12-3b18.p1k chr07 419 741 811452 811773 F 323 98.14 1325 ambiguous_trans 18 ALIGNMENT 0 Y12-3b18.p1k chr04 417 137 514018 514017 C 281 0.00 1325 ambiguous_trans 14 ALIGNMENT 0 Y12-3b18.p1k chr12 137 417 946815 946814 F 281 0.00 1325 ambiguous_trans 11 ALIGNMENT 0 Y12-3b18.p1k chr09 137 418 246217 246216 F 282 0.00 1325 ambiguous_trans_ua 5 ALIGNMENT 0 Y12-3b18.p1k chr14 137 417 524729 524728 F 281 0.00 1325 ambiguous_trans 20 ALIGNMENT 308 Y12-3b18.p1k chr05 751 419 431486 431818 C 333 99.70 1325 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-3b18.p1k chr04 857 742 513696 513695 C 116 0.00 1325 ambiguous_trans 14 ALIGNMENT 0 Y12-3b18.p1k chr04 857 492 513515 513514 C 366 0.00 1325 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-3b18.p1k chr03 137 418 84810 84809 F 282 0.00 1325 ambiguous_trans 15 ALIGNMENT 0 Y12-3b18.p1k chr05 752 857 62474 62473 F 106 0.00 1325 ambiguous_trans_ua 4 ALIGNMENT 62 Y12-3b18.p1k chr07 731 618 817418 817532 C 114 86.84 1325 ambiguous_trans 24 ALIGNMENT 297 Y12-3b18.p1k chr04 751 419 519312 519643 C 333 98.80 1325 ambiguous_trans 8 ALIGNMENT 0 Y12-3b18.p1k chr10 137 472 204036 204035 F 336 0.00 1325 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-3b18.p1k chr15 417 137 704398 704397 C 281 0.00 1325 ambiguous_trans 7 ALIGNMENT 0 Y12-3b18.p1k chr04 418 137 513587 513586 C 282 0.00 1325 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-3b18.p1k chr04 857 752 519313 519312 C 106 0.00 1325 ambiguous_trans 8 ALIGNMENT 28 Y12-3b18.p1k chr04 491 419 513514 513586 C 73 82.19 1325 ambiguous_trans_ua 28 ALIGNMENT 1025 Y12-3b19.q1k chr02 36 1224 98267 99467 F 1189 96.47 1337 accept 0 ALIGNMENT 731 Y12-3b19.p1k chr02 1257 296 101874 102855 C 962 93.35 1346 accept 0 ALIGNMENT 931 Y12-3b20.q1k chr16 1137 37 321145 322267 C 1101 96.55 1319 accept 0 ALIGNMENT 778 Y12-3b20.p1k chr16 288 1308 318322 319328 F 1021 94.52 1376 accept 0 ALIGNMENT 749 Y12-3b21.p1k chr05 306 1175 236047 236930 F 870 96.21 1338 accept 0 ALIGNMENT 999 Y12-3b21.q1k chr05 1301 31 240303 241589 C 1271 94.18 1337 accept 0 ALIGNMENT 792 Y12-3b22.p1k chr12 270 1213 212028 212978 F 944 95.66 1267 accept 0 ALIGNMENT 912 Y12-3b22.q1k chr12 1062 37 221172 222202 C 1026 98.05 1309 accept 0 ALIGNMENT 715 Y12-3b23.p1k chr16 264 1176 678559 679477 F 913 92.99 1227 accept 0 ALIGNMENT 973 Y12-3c02.q1k chr05 36 1232 69544 70731 F 1197 94.74 1396 accept 0 ALIGNMENT 651 Y12-3c02.p1k chr05 986 27 72246 73199 C 960 90.42 1340 accept 0 ALIGNMENT 700 Y12-3c03.p1k chr04 277 1135 26039 26912 F 859 96.39 1437 accept 0 ALIGNMENT 966 Y12-3c03.q1k chr04 1124 38 29549 30628 C 1087 97.42 1411 accept 0 ALIGNMENT 685 Y12-3c04.q1k chr15 848 35 817304 818110 C 814 96.19 1365 accept 0 ALIGNMENT 659 Y12-3c04.p1k chr15 265 1110 814075 814924 F 846 91.84 1357 accept 0 ALIGNMENT 26 Y12-3c05.q1k chr07 906 863 530014 530057 C 44 93.18 1392 reject_low 4 ALIGNMENT 0 Y12-3c05.q1k chr08 864 62 365406 365405 C 803 0.00 1392 reject_low 3 ALIGNMENT 0 Y12-3c05.q1k chr05 868 62 309029 309028 C 807 0.00 1392 reject_low 7 ALIGNMENT 0 Y12-3c05.q1k chr04 862 62 1038687 1038686 C 801 0.00 1392 reject_low 1 ALIGNMENT 0 Y12-3c05.q1k chr02 873 62 272564 272563 C 812 0.00 1392 reject_low 6 ALIGNMENT 683 Y12-3c05.p1k chr11 1085 270 389723 390545 C 816 95.47 1429 accept 0 ALIGNMENT 22 Y12-3c05.q1k chr02 904 874 272533 272563 C 31 96.77 1392 reject_low 6 ALIGNMENT 0 Y12-3c05.q1k chr13 62 867 354191 354190 F 806 0.00 1392 reject_low 5 ALIGNMENT 23 Y12-3c05.q1k chr08 913 865 365356 365405 C 49 87.76 1392 reject_low 3 ALIGNMENT 0 Y12-3c05.q1k chr15 62 861 227287 227286 F 800 0.00 1392 reject_low 2 ALIGNMENT 31 Y12-3c05.q1k chr04 905 863 1038644 1038686 C 43 97.67 1392 reject_low 1 ALIGNMENT 29 Y12-3c05.q1k chr15 862 905 227287 227330 F 44 95.45 1392 reject_low 2 ALIGNMENT 21 Y12-3c05.q1k chr13 868 909 354191 354232 F 42 90.48 1392 reject_low 5 ALIGNMENT 932 Y12-3c05.q1k chr11 38 1210 385960 387130 F 1173 95.06 1392 accept 0 ALIGNMENT 0 Y12-3c05.q1k chr07 862 62 530058 530057 C 801 0.00 1392 reject_low 4 ALIGNMENT 22 Y12-3c05.q1k chr05 896 869 309001 309028 C 28 100.00 1392 reject_low 7 ALIGNMENT 967 Y12-3c06.q1k chr08 37 1243 206987 208189 F 1207 94.53 1393 accept 0 ALIGNMENT 522 Y12-3c06.p1k chr08 1025 265 212016 212798 C 761 91.72 1304 accept 0 ALIGNMENT 451 Y12-3c06.p1k chr08 793 265 214265 214796 C 529 96.98 1304 reject_low 1 ALIGNMENT 0 Y12-3c08.q1k chr16 387 839 689655 689654 F 453 0.00 1421 reject_low 2 ALIGNMENT 83 Y12-3c08.q1k chr16 293 386 689562 689655 F 94 96.81 1421 reject_low 2 ALIGNMENT 0 Y12-3c08.q1k chr09 62 290 248845 248844 F 229 0.00 1421 reject_low 1 ALIGNMENT 0 Y12-3c08.q1k chr03 330 329 227974 227992 F 0 0.00 1421 reject_low 3 ALIGNMENT 892 Y12-3c08.q1k chr05 1149 41 287674 288774 C 1109 95.31 1421 accept 0 ALIGNMENT 0 Y12-3c08.q1k chr03 378 839 228040 228039 F 462 0.00 1421 reject_low 3 ALIGNMENT 42 Y12-3c08.q1k chr03 330 377 227993 228040 F 48 97.92 1421 reject_low 3 ALIGNMENT 87 Y12-3c08.q1k chr09 291 382 248845 248936 F 92 98.91 1421 reject_low 1 ALIGNMENT 0 Y12-3c08.q1k chr16 62 292 689562 689561 F 231 0.00 1421 reject_low 2 ALIGNMENT 0 Y12-3c08.q1k chr03 62 292 227937 227936 F 231 0.00 1421 reject_low 3 ALIGNMENT 0 Y12-3c08.q1k chr09 383 839 248936 248935 F 457 0.00 1421 reject_low 1 ALIGNMENT 31 Y12-3c08.q1k chr03 293 329 227937 227973 F 37 94.59 1421 reject_low 3 ALIGNMENT 741 Y12-3c08.p1k chr05 277 1181 283383 284295 F 905 95.03 1358 accept 0 ALIGNMENT 953 Y12-3c09.q1k chr07 31 1230 345516 346707 F 1200 94.42 1409 accept 0 ALIGNMENT 671 Y12-3c09.p1k chr07 1043 278 348459 349227 C 766 98.04 1374 accept 0 ALIGNMENT 998 Y12-3c10.q1k chr12 38 1160 983392 984530 F 1123 97.60 1396 accept 0 ALIGNMENT 907 Y12-3c12.q1k chr07 1112 43 193376 194461 C 1070 96.64 1352 accept 0 ALIGNMENT 892 Y12-3c12.p1k chr07 127 1178 189862 190929 F 1052 96.01 1332 accept 0 ALIGNMENT 958 Y12-3c13.q1k chr15 1174 37 396433 397593 C 1138 95.69 1374 accept 0 ALIGNMENT 792 Y12-3c13.p1k chr15 163 1141 392336 393327 F 979 95.20 1446 accept 0 ALIGNMENT 932 Y12-3c14.q1k chr08 53 1243 212024 213229 F 1191 94.79 1409 accept_chi 1 ALIGNMENT 855 Y12-3c14.p1k chr05 1120 126 44646 45656 C 995 96.58 1335 accept_chi 0 ALIGNMENT 0 Y12-3c14.q1k chr08 62 288 214265 214264 F 227 0.00 1409 reject_low 2 ALIGNMENT 729 Y12-3c14.q1k chr08 289 1228 214265 215211 F 940 94.47 1409 reject_low 2 ALIGNMENT 929 Y12-3c15.p1k chr13 1138 98 602037 603081 C 1041 96.93 1422 accept 0 ALIGNMENT 716 Y12-3c15.p1k chr13 1138 98 599827 600871 C 1041 90.11 1422 reject_low 1 ALIGNMENT 967 Y12-3c15.q1k chr13 36 1157 598114 599243 F 1122 95.81 1343 accept 0 ALIGNMENT 898 Y12-3c16.p1k chr10 64 1207 222582 223725 F 1144 94.67 1353 accept 0 ALIGNMENT 914 Y12-3c16.q1k chr10 1119 43 225808 226898 C 1077 96.94 1337 accept 0 ALIGNMENT 490 Y12-3c17.p1k chr02 273 1114 725611 726461 F 842 87.41 1396 accept 0 ALIGNMENT 634 Y12-3c17.q1k chr02 1186 37 730413 731557 C 1150 87.04 1394 accept 0 ALIGNMENT 1053 Y12-3c18.q1k chr13 39 1278 213261 214489 F 1240 96.05 1424 accept 0 ALIGNMENT 723 Y12-3c18.p1k chr13 1147 264 216595 217487 C 884 95.59 1321 accept 0 ALIGNMENT 798 Y12-3c19.p1k chr08 268 1198 138434 139375 F 931 96.56 1465 accept 0 ALIGNMENT 1047 Y12-3c19.q1k chr08 1227 36 142009 143222 C 1192 96.56 1341 accept 0 ALIGNMENT 755 Y12-3c20.p1k chr06 272 1189 192291 193214 F 918 95.10 1343 accept 0 ALIGNMENT 1069 Y12-3c20.q1k chr06 1245 34 196348 197562 C 1212 96.62 1380 accept 0 ALIGNMENT 748 Y12-3c22.p1k chr15 281 1202 755042 755979 F 922 95.34 1259 accept 0 ALIGNMENT 1018 Y12-3c22.q1k chr15 1230 35 758690 759878 C 1196 96.15 1341 accept 0 ALIGNMENT 818 Y12-3d01.q1k chr04 997 33 237709 238666 C 965 95.96 1432 accept 0 ALIGNMENT 652 Y12-3d01.p1k chr04 267 1079 234063 234873 F 813 93.85 1365 accept 0 ALIGNMENT 970 Y12-3d03.q1k chr12 1189 38 456399 457539 C 1152 95.92 1410 accept 0 ALIGNMENT 970 Y12-3d03.q1k chr12 1189 38 465536 466676 C 1152 95.92 1410 accept 1 ALIGNMENT 729 Y12-3d03.p1k chr12 281 1149 462430 463309 F 869 95.17 1371 accept 1 ALIGNMENT 729 Y12-3d03.p1k chr12 281 1149 453293 454172 F 869 95.17 1371 accept 0 ALIGNMENT 894 Y12-3d04.q1k chr13 39 1019 616571 617545 F 981 97.96 1453 accept 0 ALIGNMENT 498 Y12-3d06.q1k chr15 39 864 742419 743236 F 826 88.14 1423 accept 0 ALIGNMENT 902 Y12-3d07.q1k chr03 36 1097 182685 183761 F 1062 96.99 1410 accept 0 ALIGNMENT 583 Y12-3d08.p1k chr07 265 1087 204431 205274 F 823 92.71 1325 accept 0 ALIGNMENT 1003 Y12-3d08.q1k chr07 1213 35 206624 207798 C 1179 96.10 1414 accept 0 ALIGNMENT 953 Y12-3d09.p1k chr05 1174 40 342021 343170 C 1135 95.77 1364 accept 0 ALIGNMENT 1018 Y12-3d09.q1k chr05 36 1188 339531 340698 F 1153 96.96 1404 accept 0 ALIGNMENT 677 Y12-3d10.p1k chr03 46 1014 303403 304365 F 969 91.43 1311 ambiguous_tel 1 ALIGNMENT 410 Y12-3d10.p1k chr09 869 345 10305 10826 C 525 93.71 1311 reject_low 3 ALIGNMENT 410 Y12-3d10.p1k chr10 869 345 10288 10809 C 525 93.71 1311 reject_low 4 ALIGNMENT 1014 Y12-3d10.q1k chr02 40 1208 756588 757771 F 1169 96.83 1411 accept 0 ALIGNMENT 339 Y12-3d10.p1k chr12 544 1102 1059293 1059865 F 559 89.09 1311 reject_low 2 ALIGNMENT 0 Y12-3d10.p1k chr14 199 827 755557 755556 F 629 0.00 1311 reject_low 5 ALIGNMENT 0 Y12-3d10.p1k chr12 107 543 1059293 1059292 F 437 0.00 1311 reject_low 2 ALIGNMENT 92 Y12-3d10.p1k chr14 60 198 755419 755557 F 139 89.93 1311 reject_low 5 ALIGNMENT 0 Y12-3d10.p1k chr10 344 107 10810 10809 C 238 0.00 1311 reject_low 4 ALIGNMENT 0 Y12-3d10.p1k chr09 344 107 10827 10826 C 238 0.00 1311 reject_low 3 ALIGNMENT 65 Y12-3d11.p1k chr06 273 538 99267 99532 F 266 75.19 1386 reject_low 1 ALIGNMENT 0 Y12-3d11.p1k chr10 174 857 714914 714913 F 684 0.00 1386 reject_low 2 ALIGNMENT 985 Y12-3d11.q1k chr10 1283 38 718061 719321 C 1246 94.62 1429 accept 0 ALIGNMENT 0 Y12-3d11.p1k chr06 539 857 99532 99531 F 319 0.00 1386 reject_low 1 ALIGNMENT 962 Y12-3d11.p1k chr10 21 1272 715059 716331 F 1252 93.13 1386 accept 0 ALIGNMENT 0 Y12-3d11.p1k chr06 62 272 99267 99266 F 211 0.00 1386 reject_low 1 ALIGNMENT 45 Y12-3d11.p1k chr10 27 173 714768 714914 F 147 82.99 1386 reject_low 2 ALIGNMENT 892 Y12-3d12.p1k chr11 114 1206 635289 636395 F 1093 94.97 1349 accept 0 ALIGNMENT 916 Y12-3d12.q1k chr11 1097 47 640343 641403 C 1051 97.05 1376 accept 0 ALIGNMENT 105 Y12-3d13.p1k chr05 381 109 79661 79932 C 273 80.59 1343 reject_low 1 ALIGNMENT 0 Y12-3d13.p1k chr05 882 382 79662 79661 C 501 0.00 1343 reject_low 1 ALIGNMENT 913 Y12-3d13.q1k chr10 1124 36 529183 530287 C 1089 95.96 1387 accept 0 ALIGNMENT 968 Y12-3d13.p1k chr10 25 1182 526197 527375 F 1158 95.68 1343 accept 0 ALIGNMENT 896 Y12-3d14.p1k chr03 122 1216 125561 126670 F 1095 95.53 1379 accept 0 ALIGNMENT 915 Y12-3d14.q1k chr03 1157 50 130802 131924 C 1108 95.49 1381 accept 0 ALIGNMENT 1035 Y12-3d15.q1k chr12 46 1201 158588 159750 F 1156 97.06 1392 accept 0 ALIGNMENT 1024 Y12-3d15.p1k chr12 1303 34 160816 162082 C 1270 94.96 1403 accept 0 ALIGNMENT 0 Y12-3d16.q1k chr08 710 879 372913 372912 F 170 0.00 1339 reject_low 12 ALIGNMENT 30 Y12-3d16.q1k chr05 677 738 83156 83217 F 62 91.94 1339 reject_low 4 ALIGNMENT 0 Y12-3d16.q1k chr02 696 62 780467 780466 C 635 0.00 1339 reject_low 3 ALIGNMENT 22 Y12-3d16.q1k chr08 681 709 372885 372913 F 29 100.00 1339 reject_low 12 ALIGNMENT 0 Y12-3d16.q1k chr02 879 742 780360 780359 C 138 0.00 1339 reject_low 2 ALIGNMENT 0 Y12-3d16.q1k chr04 713 879 1346569 1346568 F 167 0.00 1339 reject_low 13 ALIGNMENT 26 Y12-3d16.q1k chr12 672 706 329731 329765 F 35 100.00 1339 reject_low 6 ALIGNMENT 0 Y12-3d16.q1k chr04 690 62 654385 654384 C 629 0.00 1339 reject_low 7 ALIGNMENT 0 Y12-3d16.q1k chr07 879 710 158866 158865 C 170 0.00 1339 reject_low 11 ALIGNMENT 0 Y12-3d16.q1k chr02 673 62 455784 455783 C 612 0.00 1339 reject_low 9 ALIGNMENT 0 Y12-3d16.q1k chr04 62 673 1346528 1346527 F 612 0.00 1339 reject_low 13 ALIGNMENT 0 Y12-3d16.q1k chr04 879 742 654335 654334 C 138 0.00 1339 reject_low 7 ALIGNMENT 0 Y12-3d16.q1k chr08 62 680 372885 372884 F 619 0.00 1339 reject_low 12 ALIGNMENT 21 Y12-3d16.q1k chr02 738 685 505199 505252 C 54 88.89 1339 reject_low 10 ALIGNMENT 0 Y12-3d16.q1k chr08 62 673 169166 169165 F 612 0.00 1339 reject_low 5 ALIGNMENT 0 Y12-3d16.q1k chr02 671 62 780429 780428 C 610 0.00 1339 reject_low 2 ALIGNMENT 20 Y12-3d16.q1k chr04 674 712 1346528 1346569 F 39 92.31 1339 reject_low 13 ALIGNMENT 25 Y12-3d16.q1k chr04 741 691 654334 654384 C 51 92.16 1339 reject_low 7 ALIGNMENT 0 Y12-3d16.q1k chr02 879 739 505200 505199 C 141 0.00 1339 reject_low 10 ALIGNMENT 0 Y12-3d16.q1k chr12 707 879 329765 329764 F 173 0.00 1339 reject_low 6 ALIGNMENT 0 Y12-3d16.q1k chr13 742 879 588652 588651 F 138 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-3d16.q1k chr02 879 743 780422 780421 C 137 0.00 1339 reject_low 3 ALIGNMENT 27 Y12-3d16.q1k chr02 742 697 780421 780466 C 46 95.65 1339 reject_low 3 ALIGNMENT 0 Y12-3d16.q1k chr05 62 676 83156 83155 F 615 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-3d16.q1k chr13 62 671 588583 588582 F 610 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-3d16.q1k chr02 879 703 455756 455755 C 177 0.00 1339 reject_low 9 ALIGNMENT 971 Y12-3d16.q1k chr04 1107 40 747124 748194 C 1068 98.03 1339 accept 0 ALIGNMENT 0 Y12-3d16.q1k chr06 879 736 160560 160559 C 144 0.00 1339 reject_low 8 ALIGNMENT 0 Y12-3d16.q1k chr06 700 62 160594 160593 C 639 0.00 1339 reject_low 8 ALIGNMENT 23 Y12-3d16.q1k chr06 735 701 160559 160593 C 35 97.14 1339 reject_low 8 ALIGNMENT 0 Y12-3d16.q1k chr07 680 62 158894 158893 C 619 0.00 1339 reject_low 11 ALIGNMENT 32 Y12-3d16.q1k chr02 741 672 780359 780428 C 70 91.43 1339 reject_low 2 ALIGNMENT 0 Y12-3d16.q1k chr05 739 879 83217 83216 F 141 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-3d16.q1k chr08 721 879 169212 169211 F 159 0.00 1339 reject_low 5 ALIGNMENT 30 Y12-3d16.q1k chr08 674 720 169166 169212 F 47 95.74 1339 reject_low 5 ALIGNMENT 0 Y12-3d16.q1k chr02 684 62 505253 505252 C 623 0.00 1339 reject_low 10 ALIGNMENT 22 Y12-3d16.q1k chr02 702 674 455755 455783 C 29 100.00 1339 reject_low 9 ALIGNMENT 22 Y12-3d16.q1k chr07 709 681 158865 158893 C 29 100.00 1339 reject_low 11 ALIGNMENT 896 Y12-3d16.p1k chr04 36 1150 744004 745126 F 1115 94.62 1325 accept 0 ALIGNMENT 0 Y12-3d16.q1k chr12 62 671 329731 329730 F 610 0.00 1339 reject_low 6 ALIGNMENT 38 Y12-3d16.q1k chr13 672 741 588583 588652 F 70 94.29 1339 reject_low 1 ALIGNMENT 469 Y12-3d18.p1k chr04 983 276 1223250 1223958 C 708 89.41 1370 accept 0 ALIGNMENT 863 Y12-3d18.q1k chr04 40 1149 1219466 1220589 F 1110 94.05 1369 accept 0 ALIGNMENT 1008 Y12-3d19.q1k chr11 1206 37 268133 269306 C 1170 96.75 1382 accept 0 ALIGNMENT 808 Y12-3d19.p1k chr11 135 1128 265661 266654 F 994 95.47 1368 accept 0 ALIGNMENT 735 Y12-3d20.p1k chr09 1128 288 404366 405208 C 841 96.31 1368 accept 0 ALIGNMENT 994 Y12-3d20.q1k chr09 37 1181 400608 401766 F 1145 96.51 1371 accept 0 ALIGNMENT 752 Y12-3d21.p1k chr04 1206 282 1326327 1327263 C 925 95.57 1343 accept 0 ALIGNMENT 1040 Y12-3d21.q1k chr04 38 1266 1325069 1326307 F 1229 96.01 1325 accept 0 ALIGNMENT 767 Y12-3d22.p1k chr12 253 1184 268490 269427 F 932 95.60 1257 accept 0 ALIGNMENT 996 Y12-3d22.q1k chr12 1191 36 270506 271673 C 1156 96.54 1308 accept 0 ALIGNMENT 779 Y12-3d23.p1k chr04 266 1230 21773 22740 F 965 94.30 1297 accept 0 ALIGNMENT 974 Y12-3d23.q1k chr04 1169 37 23279 24422 C 1133 96.03 1310 accept 0 ALIGNMENT 680 Y12-3d24.p1k chr07 973 33 823888 824831 C 941 90.65 1248 accept_chi 0 ALIGNMENT 534 Y12-3d24.q1k chr07 37 784 808987 809729 F 748 91.31 1355 accept_chi 1 ALIGNMENT 540 Y12-3e01.q1k chr02 732 34 652444 653143 C 699 92.99 1375 accept 0 ALIGNMENT 921 Y12-3e03.q1k chr08 1068 40 19867 20900 C 1029 97.18 1344 accept 0 ALIGNMENT 686 Y12-3e03.p1k chr08 260 1108 15786 16643 F 849 94.82 1440 accept 0 ALIGNMENT 392 Y12-3e05.p1k chr12 528 1117 803547 804146 F 590 90.51 1468 accept 0 ALIGNMENT 1071 Y12-3e05.q1k chr12 1255 37 805631 806857 C 1219 96.55 1407 accept 0 ALIGNMENT 744 Y12-3e06.p1k chr04 257 1159 618494 619407 F 903 96.35 1342 accept_chi 1 ALIGNMENT 998 Y12-3e06.q1k chr07 1141 37 48760 49878 C 1105 97.74 1370 accept_chi 0 ALIGNMENT 733 Y12-3e07.p1k chr07 1111 259 760827 761694 C 853 96.37 1426 accept 0 ALIGNMENT 979 Y12-3e07.q1k chr07 37 1178 757562 758710 F 1142 96.67 1401 accept 0 ALIGNMENT 0 Y12-3e08.p1k chrm 839 288 56256 56255 C 552 0.00 1363 reject_low 1 ALIGNMENT 0 Y12-3e08.p1k chrm 247 282 13628 13627 F 36 0.00 1363 accept 0 ALIGNMENT 28 Y12-3e08.p1k chrm 287 239 56255 56305 C 49 87.76 1363 reject_low 1 ALIGNMENT 630 Y12-3e08.p1k chrm 283 1145 13628 14514 F 863 93.97 1363 accept 0 ALIGNMENT 969 Y12-3e08.q1k chrm 1166 44 16295 17423 C 1123 97.51 1419 accept 0 ALIGNMENT 986 Y12-3e09.p1k chr12 1137 25 541685 542801 C 1113 97.39 1417 accept 0 ALIGNMENT 1036 Y12-3e09.q1k chr12 38 1232 538614 539817 F 1195 96.57 1433 accept 0 ALIGNMENT 271 Y12-3e10.q1k chr16 35 754 932065 932784 F 720 79.86 1410 reject_low 2 ALIGNMENT 463 Y12-3e10.q1k chr02 428 1202 801597 802384 F 775 88.13 1410 reject_bad_break 0 ALIGNMENT 0 Y12-3e10.q1k chr02 384 427 801559 801596 F 44 0.00 1410 reject_bad_break 0 ALIGNMENT 0 Y12-3e10.q1k chr07 746 879 1071711 1071710 F 134 0.00 1410 reject_low 1 ALIGNMENT 800 Y12-3e10.p1k chr07 1246 264 1077688 1078674 C 983 95.32 1393 reject_low 1 ALIGNMENT 23 Y12-3e10.q1k chr02 279 383 801454 801558 F 105 74.29 1410 reject_bad_break 0 ALIGNMENT 0 Y12-3e10.q1k chr02 62 278 801454 801453 F 217 0.00 1410 reject_bad_break 0 ALIGNMENT 779 Y12-3e10.p1k chr02 1246 264 806428 807414 C 983 94.61 1393 reject_bad_break 0 ALIGNMENT 0 Y12-3e10.q1k chr07 62 94 1071067 1071066 F 33 0.00 1410 reject_low 1 ALIGNMENT 133 Y12-3e10.q1k chr07 95 745 1071067 1071711 F 651 74.96 1410 reject_low 1 ALIGNMENT 0 Y12-3e10.q1k chr16 755 879 932784 932783 F 125 0.00 1410 reject_low 2 ALIGNMENT 931 Y12-3e11.q1k chr06 35 1100 200956 202036 F 1066 97.19 1367 accept 0 ALIGNMENT 983 Y12-3e11.p1k chr06 1097 20 202461 203549 C 1078 97.50 1420 accept 0 ALIGNMENT 944 Y12-3e12.q1k chr13 1224 37 308441 309638 C 1188 94.53 1408 accept 0 ALIGNMENT 954 Y12-3e12.p1k chr13 20 1109 303597 304700 F 1090 96.42 1316 accept 0 ALIGNMENT 47 Y12-3e13.q1k chr10 1043 901 2115 2259 C 143 79.02 1387 reject_low 160 ALIGNMENT 0 Y12-3e13.q1k chr04 62 902 1530116 1530115 F 841 0.00 1387 reject_low 54 ALIGNMENT 0 Y12-3e13.q1k chr04 62 982 1530089 1530088 F 921 0.00 1387 reject_low 107 ALIGNMENT 122 Y12-3e13.q1k chr06 1088 903 900 1085 C 186 90.32 1387 reject_low 58 ALIGNMENT 0 Y12-3e13.q1k chr04 62 902 1530260 1530259 F 841 0.00 1387 reject_low 180 ALIGNMENT 53 Y12-3e13.q1k chr15 983 1072 1089254 1089343 F 90 87.78 1387 reject_low 109 ALIGNMENT 39 Y12-3e13.q1k chr08 922 1009 560740 560828 F 88 82.95 1387 reject_low 215 ALIGNMENT 0 Y12-3e13.q1k chr08 62 921 560704 560703 F 860 0.00 1387 reject_low 212 ALIGNMENT 0 Y12-3e13.q1k chr07 62 902 1089130 1089129 F 841 0.00 1387 reject_low 95 ALIGNMENT 59 Y12-3e13.q1k chr16 907 1011 946090 946195 F 105 86.67 1387 reject_low 146 ALIGNMENT 0 Y12-3e13.q1k chr10 906 62 1822 1821 C 845 0.00 1387 reject_low 164 ALIGNMENT 0 Y12-3e13.q1k chr16 62 902 946122 946121 F 841 0.00 1387 reject_low 42 ALIGNMENT 0 Y12-3e13.q1k chr16 62 902 946158 946157 F 841 0.00 1387 reject_low 76 ALIGNMENT 112 Y12-3e13.q1k chr16 1133 903 1625 1855 C 231 84.42 1387 reject_low 52 ALIGNMENT 819 Y12-3e13.q1k chr06 1116 27 1052 2125 C 1090 92.66 1387 reject_low 18 ALIGNMENT 0 Y12-3e13.q1k chr05 938 62 2059 2058 C 877 0.00 1387 reject_low 227 ALIGNMENT 0 Y12-3e13.q1k chr09 900 62 2241 2240 C 839 0.00 1387 reject_low 111 ALIGNMENT 45 Y12-3e13.q1k chr02 1182 1024 2221 2383 C 159 79.25 1387 reject_low 61 ALIGNMENT 43 Y12-3e13.q1k chr16 1057 922 1519 1656 C 136 78.68 1387 reject_low 174 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 7428 7427 C 860 0.00 1387 reject_low 251 ALIGNMENT 0 Y12-3e13.q1k chr12 1012 1064 1069836 1076299 F 53 0.00 1387 reject_low 246 ALIGNMENT 0 Y12-3e13.q1k chr13 921 62 1805 1804 C 860 0.00 1387 reject_low 187 ALIGNMENT 0 Y12-3e13.q1k chr13 902 62 1932 1931 C 841 0.00 1387 reject_low 97 ALIGNMENT 60 Y12-3e13.q1k chr12 1043 922 1841 1964 C 122 84.43 1387 reject_low 130 ALIGNMENT 65 Y12-3e13.q1k chr06 1062 903 888 1049 C 160 81.25 1387 reject_low 102 ALIGNMENT 43 Y12-3e13.q1k chr08 922 1057 560668 560805 F 136 78.68 1387 reject_low 170 ALIGNMENT 95 Y12-3e13.q1k chr10 1187 907 1822 2109 C 281 80.43 1387 reject_low 40 ALIGNMENT 0 Y12-3e13.q1k chr12 906 62 2088 2087 C 845 0.00 1387 reject_low 140 ALIGNMENT 0 Y12-3e13.q1k chr08 62 902 560469 560468 F 841 0.00 1387 reject_low 68 ALIGNMENT 76 Y12-3e13.q1k chr16 1009 903 1640 1747 C 107 91.59 1387 reject_low 100 ALIGNMENT 0 Y12-3e13.q1k chr05 921 62 1644 1643 C 860 0.00 1387 reject_low 224 ALIGNMENT 732 Y12-3e13.p1k chr16 1122 270 942971 943834 C 853 96.37 1432 reject_low 27 ALIGNMENT 37 Y12-3e13.q1k chr16 1062 922 1478 1620 C 141 76.60 1387 reject_low 189 ALIGNMENT 0 Y12-3e13.q1k chr16 62 921 946249 946248 F 860 0.00 1387 reject_low 226 ALIGNMENT 918 Y12-3e13.q1k chr05 1133 27 1828 2935 C 1107 94.67 1387 reject_low 2 ALIGNMENT 0 Y12-3e13.q1k chr08 62 921 560668 560667 F 860 0.00 1387 reject_low 170 ALIGNMENT 0 Y12-3e13.q1k chr10 902 62 2186 2185 C 841 0.00 1387 reject_low 66 ALIGNMENT 59 Y12-3e13.q1k chr06 1017 907 898 1009 C 111 85.59 1387 reject_low 136 ALIGNMENT 0 Y12-3e13.q1k chr12 906 62 1800 1799 C 845 0.00 1387 reject_low 190 ALIGNMENT 0 Y12-3e13.q1k chr12 62 906 1069730 1069729 F 845 0.00 1387 reject_low 246 ALIGNMENT 41 Y12-3e13.q1k chr02 1011 922 1497 1587 C 90 83.33 1387 reject_low 202 ALIGNMENT 0 Y12-3e13.q1k chr09 906 62 2091 2090 C 845 0.00 1387 reject_low 63 ALIGNMENT 0 Y12-3e13.q1k chr12 917 62 1897 1896 C 856 0.00 1387 reject_low 113 ALIGNMENT 54 Y12-3e13.q1k chr07 983 1116 1088995 1089127 F 134 82.09 1387 reject_low 83 ALIGNMENT 68 Y12-3e13.q1k chr05 1011 907 1733 1838 C 105 89.52 1387 reject_low 110 ALIGNMENT 0 Y12-3e13.q1k chr05 62 921 575180 575179 F 860 0.00 1387 reject_low 185 ALIGNMENT 0 Y12-3e13.q1k chr06 900 62 1160 1159 C 839 0.00 1387 reject_low 103 ALIGNMENT 41 Y12-3e13.q1k chr15 922 1011 1089552 1089642 F 90 83.33 1387 reject_low 208 ALIGNMENT 0 Y12-3e13.q1k chr14 982 62 1974 1973 C 921 0.00 1387 reject_low 87 ALIGNMENT 55 Y12-3e13.q1k chr15 903 1043 1089317 1089459 F 141 80.85 1387 reject_low 134 ALIGNMENT 42 Y12-3e13.q1k chr12 903 1126 1069798 1070021 F 224 74.55 1387 reject_low 152 ALIGNMENT 643 Y12-3e13.p1k chr12 1155 270 1065542 1066418 C 886 93.12 1432 reject_low 32 ALIGNMENT 903 Y12-3e13.q1k chr13 1133 27 1845 2964 C 1107 94.31 1387 reject_low 4 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 1010 2181 7482 C 55 0.00 1387 reject_low 237 ALIGNMENT 0 Y12-3e13.q1k chr10 921 62 1843 1842 C 860 0.00 1387 reject_low 166 ALIGNMENT 0 Y12-3e13.q1k chr15 62 906 1089357 1089356 F 845 0.00 1387 reject_low 144 ALIGNMENT 55 Y12-3e13.q1k chr12 903 1043 1076353 1076495 F 141 80.85 1387 reject_low 133 ALIGNMENT 53 Y12-3e13.q1k chr12 983 1072 1076290 1076379 F 90 87.78 1387 reject_low 108 ALIGNMENT 22 Y12-3e13.q1k chr10 972 899 2236 2309 C 74 77.03 1387 reject_low 235 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 1895 1894 C 841 0.00 1387 reject_low 239 ALIGNMENT 27 Y12-3e13.q1k chr04 922 976 1530387 1530441 F 55 83.64 1387 reject_low 229 ALIGNMENT 0 Y12-3e13.q1k chr16 62 902 946014 946013 F 841 0.00 1387 reject_low 36 ALIGNMENT 25 Y12-3e13.q1k chr10 983 922 1673 1734 C 62 80.65 1387 reject_low 231 ALIGNMENT 29 Y12-3e13.q1k chr12 1011 922 1838 1928 C 90 78.89 1387 reject_low 228 ALIGNMENT 0 Y12-3e13.q1k chr12 906 62 7623 7622 C 845 0.00 1387 reject_low 245 ALIGNMENT 0 Y12-3e13.q1k chr16 921 62 1657 1656 C 860 0.00 1387 reject_low 174 ALIGNMENT 22 Y12-3e13.q1k chr05 1065 1116 574928 574978 F 52 82.69 1387 reject_low 193 ALIGNMENT 50 Y12-3e13.q1k chr02 1116 922 1825 2019 C 195 76.92 1387 reject_low 114 ALIGNMENT 76 Y12-3e13.q1k chr12 903 1009 1076425 1076532 F 107 91.59 1387 reject_low 96 ALIGNMENT 0 Y12-3e13.q1k chr09 982 973 2230 2252 C 10 0.00 1387 reject_low 234 ALIGNMENT 0 Y12-3e13.q1k chr10 898 62 2310 2309 C 837 0.00 1387 reject_low 235 ALIGNMENT 112 Y12-3e13.q1k chr14 1133 903 1716 1946 C 231 84.42 1387 reject_low 51 ALIGNMENT 0 Y12-3e13.q1k chr13 902 62 2040 2039 C 841 0.00 1387 reject_low 50 ALIGNMENT 63 Y12-3e13.q1k chr16 922 1043 946213 946336 F 122 85.25 1387 reject_low 118 ALIGNMENT 79 Y12-3e13.q1k chr05 1158 901 1693 1952 C 258 78.68 1387 reject_low 60 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 2164 2163 C 841 0.00 1387 reject_low 48 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 1063 2181 7320 C 2 0.00 1387 reject_low 249 ALIGNMENT 31 Y12-3e13.q1k chr09 983 907 1726 1802 C 77 80.52 1387 reject_low 225 ALIGNMENT 60 Y12-3e13.q1k chr02 1116 903 1861 2074 C 214 77.57 1387 reject_low 90 ALIGNMENT 0 Y12-3e13.q1k chr16 62 921 946357 946356 F 860 0.00 1387 reject_low 148 ALIGNMENT 50 Y12-3e13.q1k chr02 1116 922 2077 2271 C 195 76.92 1387 reject_low 115 ALIGNMENT 37 Y12-3e13.q1k chr12 983 922 1687 1748 C 62 87.10 1387 reject_low 218 ALIGNMENT 58 Y12-3e13.q1k chr16 1043 903 1677 1819 C 141 81.56 1387 reject_low 127 ALIGNMENT 0 Y12-3e13.q1k chr10 906 62 1966 1965 C 845 0.00 1387 reject_low 120 ALIGNMENT 0 Y12-3e13.q1k chr08 898 62 1848 1847 C 837 0.00 1387 reject_low 80 ALIGNMENT 41 Y12-3e13.q1k chr08 1011 922 1662 1752 C 90 83.33 1387 reject_low 205 ALIGNMENT 0 Y12-3e13.q1k chr08 906 62 1732 1731 C 845 0.00 1387 reject_low 183 ALIGNMENT 0 Y12-3e13.q1k chr16 906 62 1780 1779 C 845 0.00 1387 reject_low 145 ALIGNMENT 0 Y12-3e13.q1k chr05 900 62 1989 1988 C 839 0.00 1387 reject_low 45 ALIGNMENT 0 Y12-3e13.q1k chr15 62 921 1089552 1089551 F 860 0.00 1387 reject_low 208 ALIGNMENT 43 Y12-3e13.q1k chr08 903 1009 560613 560720 F 107 81.31 1387 reject_low 181 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 2020 2019 C 841 0.00 1387 reject_low 75 ALIGNMENT 22 Y12-3e13.q1k chr15 1065 1116 1089264 1089314 F 52 82.69 1387 reject_low 199 ALIGNMENT 59 Y12-3e13.q1k chr05 907 1011 575021 575126 F 105 86.67 1387 reject_low 138 ALIGNMENT 60 Y12-3e13.q1k chr10 1116 903 1936 2149 C 214 77.57 1387 reject_low 92 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 1044 2181 7519 C 21 0.00 1387 reject_low 242 ALIGNMENT 0 Y12-3e13.q1k chr15 62 921 1089516 1089515 F 860 0.00 1387 reject_low 188 ALIGNMENT 22 Y12-3e13.q1k chr14 1116 1065 1913 1963 C 52 82.69 1387 reject_low 198 ALIGNMENT 43 Y12-3e13.q1k chr08 983 907 1655 1731 C 77 85.71 1387 reject_low 183 ALIGNMENT 0 Y12-3e13.q1k chr13 906 62 1964 1963 C 845 0.00 1387 reject_low 142 ALIGNMENT 60 Y12-3e13.q1k chr08 1011 903 1770 1879 C 109 86.24 1387 reject_low 131 ALIGNMENT 63 Y12-3e13.q1k chr16 903 1156 946158 946413 F 254 76.77 1387 reject_low 76 ALIGNMENT 43 Y12-3e13.q1k chr12 922 1057 1076516 1076653 F 136 78.68 1387 reject_low 171 ALIGNMENT 0 Y12-3e13.q1k chr08 62 906 560581 560580 F 845 0.00 1387 reject_low 104 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 1967 1966 C 841 0.00 1387 reject_low 74 ALIGNMENT 61 Y12-3e13.q1k chr02 1133 903 1592 1822 C 231 77.06 1387 reject_low 81 ALIGNMENT 23 Y12-3e13.q1k chr02 1133 1065 1628 1695 C 69 79.71 1387|0,7 reject_low 232,233,236,239,241 ALIGNMENT 0 Y12-3e13.q1k chr10 902 62 2330 2329 C 841 0.00 1387 reject_low 78 ALIGNMENT 0 Y12-3e13.q1k chr12 62 921 1076552 1076551 F 860 0.00 1387 reject_low 186 ALIGNMENT 35 Y12-3e13.q1k chr05 1011 922 1481 1571 C 90 81.11 1387 reject_low 222 ALIGNMENT 0 Y12-3e13.q1k chr14 1064 62 1964 1963 C 1003 0.00 1387 reject_low 198 ALIGNMENT 894 Y12-3e13.q1k chr12 27 1133 1075392 1076511 F 1107 94.04 1387 reject_low 13 ALIGNMENT 59 Y12-3e13.q1k chr14 1011 907 1765 1870 C 105 86.67 1387 reject_low 143 ALIGNMENT 0 Y12-3e13.q1k chr06 982 973 1113 1135 C 10 0.00 1387 reject_low 243 ALIGNMENT 91 Y12-3e13.q1k chr10 1133 903 1955 2185 C 231 81.39 1387 reject_low 66 ALIGNMENT 0 Y12-3e13.q1k chr12 62 921 1076516 1076515 F 860 0.00 1387 reject_low 171 ALIGNMENT 0 Y12-3e13.q1k chr02 921 62 2272 2271 C 860 0.00 1387 reject_low 115 ALIGNMENT 76 Y12-3e13.q1k chr07 903 1009 1089130 1089237 F 107 91.59 1387 reject_low 95 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 2147 2146 C 841 0.00 1387 reject_low 135 ALIGNMENT 54 Y12-3e13.q1k chr14 1116 983 1841 1973 C 134 82.09 1387 reject_low 87 ALIGNMENT 0 Y12-3e13.q1k chr04 62 1064 1530099 1530098 F 1003 0.00 1387 reject_low 192 ALIGNMENT 894 Y12-3e13.q1k chr04 27 1133 1529191 1530310 F 1107 94.04 1387 reject_low 12 ALIGNMENT 58 Y12-3e13.q1k chr12 1043 903 7520 7662 C 141 81.56 1387 reject_low 242 ALIGNMENT 906 Y12-3e13.q1k chr10 1187 27 2074 3242 C 1161 93.20 1387 reject_low 10 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 7555 7554 C 841 0.00 1387 reject_low 151 ALIGNMENT 0 Y12-3e13.q1k chr16 62 906 946270 946269 F 845 0.00 1387 reject_low 105 ALIGNMENT 0 Y12-3e13.q1k chr12 62 921 1069889 1069888 F 860 0.00 1387 reject_low 250 ALIGNMENT 0 Y12-3e13.q1k chr16 902 62 1820 1819 C 841 0.00 1387 reject_low 127 ALIGNMENT 41 Y12-3e13.q1k chr14 1052 922 1615 1747 C 131 78.63 1387 reject_low 178 ALIGNMENT 757 Y12-3e13.p1k chr09 270 1122 5682 6544 F 853 97.30 1432 reject_low 22 ALIGNMENT 572 Y12-3e13.p1k chr05 1168 270 570723 571598 C 899 90.88 1432 reject_low 34 ALIGNMENT 0 Y12-3e13.q1k chr13 921 62 1769 1768 C 860 0.00 1387 reject_low 207 ALIGNMENT 0 Y12-3e13.q1k chr10 902 62 2006 2005 C 841 0.00 1387 reject_low 117 ALIGNMENT 22 Y12-3e13.q1k chr13 1116 1065 2006 2056 C 52 82.69 1387 reject_low 197 ALIGNMENT 43 Y12-3e13.q1k chr14 1009 903 1695 1802 C 107 81.31 1387 reject_low 182 ALIGNMENT 0 Y12-3e13.q1k chr07 62 921 1089221 1089220 F 860 0.00 1387 reject_low 169 ALIGNMENT 56 Y12-3e13.q1k chr09 1187 907 1803 2090 C 281 75.80 1387 reject_low 63 ALIGNMENT 35 Y12-3e13.q1k chr14 1017 922 1615 1711 C 96 80.21 1387 reject_low 221 ALIGNMENT 65 Y12-3e13.q1k chr09 1011 907 1877 1982 C 105 88.57 1387 reject_low 119 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1069762 1069761 F 841 0.00 1387 reject_low 238 ALIGNMENT 0 Y12-3e13.q1k chr05 917 62 1756 1755 C 856 0.00 1387 reject_low 179 ALIGNMENT 0 Y12-3e13.q1k chr10 921 62 1879 1878 C 860 0.00 1387 reject_low 177 ALIGNMENT 0 Y12-3e13.q1k chr14 921 62 1676 1675 C 860 0.00 1387 reject_low 230 ALIGNMENT 60 Y12-3e13.q1k chr09 1116 903 1953 2166 C 214 77.57 1387 reject_low 91 ALIGNMENT 0 Y12-3e13.q1k chr12 1063 1064 1070032 1076299 F 2 0.00 1387 reject_low 250 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 1012 2181 7336 C 53 0.00 1387 reject_low 251 ALIGNMENT 0 Y12-3e13.q1k chr06 902 62 1086 1085 C 841 0.00 1387 reject_low 58 ALIGNMENT 54 Y12-3e13.q1k chr12 1116 983 2058 2190 C 134 82.09 1387 reject_low 84 ALIGNMENT 0 Y12-3e13.q1k chr10 982 973 2213 2235 C 10 0.00 1387 reject_low 235 ALIGNMENT 0 Y12-3e13.q1k chr16 982 62 1883 1882 C 921 0.00 1387 reject_low 88 ALIGNMENT 689 Y12-3e13.p1k chr15 1168 270 1085023 1085934 C 899 93.99 1432 reject_low 20 ALIGNMENT 50 Y12-3e13.q1k chr02 1077 903 2043 2218 C 175 77.71 1387|6,0 reject_low 241 ALIGNMENT 0 Y12-3e13.q1k chr12 62 982 1069627 1069626 F 921 0.00 1387 reject_low 240 ALIGNMENT 0 Y12-3e13.q1k chr13 902 62 2004 2003 C 841 0.00 1387 reject_low 125 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 1859 1858 C 841 0.00 1387 reject_low 236 ALIGNMENT 59 Y12-3e13.q1k chr05 1077 903 1847 2022 C 175 79.43 1387 reject_low 106 ALIGNMENT 0 Y12-3e13.q1k chr12 982 62 2191 2190 C 921 0.00 1387 reject_low 84 ALIGNMENT 0 Y12-3e13.q1k chr07 62 902 1089166 1089165 F 841 0.00 1387 reject_low 150 ALIGNMENT 0 Y12-3e13.q1k chr07 62 906 1089098 1089097 F 845 0.00 1387 reject_low 139 ALIGNMENT 0 Y12-3e13.q1k chr05 62 902 574945 574944 F 841 0.00 1387 reject_low 46 ALIGNMENT 0 Y12-3e13.q1k chr05 921 62 1716 1715 C 860 0.00 1387 reject_low 214 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 2075 2074 C 841 0.00 1387 reject_low 90 ALIGNMENT 0 Y12-3e13.q1k chr08 902 62 1880 1879 C 841 0.00 1387 reject_low 131 ALIGNMENT 69 Y12-3e13.q1k chr12 1011 918 1802 1896 C 94 92.55 1387 reject_low 113 ALIGNMENT 112 Y12-3e13.q1k chr05 903 1133 574945 575175 F 231 84.42 1387 reject_low 46 ALIGNMENT 0 Y12-3e13.q1k chr06 902 62 978 977 C 841 0.00 1387 reject_low 161 ALIGNMENT 43 Y12-3e13.q1k chr15 922 1057 1089480 1089617 F 136 78.68 1387 reject_low 173 ALIGNMENT 96 Y12-3e13.q1k chr02 1043 907 2040 2178 C 137 91.24 1387 reject_low 232 ALIGNMENT 37 Y12-3e13.q1k chr15 922 1062 1089516 1089658 F 141 76.60 1387 reject_low 188 ALIGNMENT 44 Y12-3e13.q1k chr10 1182 903 2044 2329 C 280 74.29 1387 reject_low 78 ALIGNMENT 48 Y12-3e13.q1k chr09 1009 907 1735 1838 C 103 83.50 1387 reject_low 163 ALIGNMENT 36 Y12-3e13.q1k chr08 922 1043 560704 560827 F 122 77.87 1387 reject_low 212 ALIGNMENT 863 Y12-3e13.q1k chr08 1191 27 1655 2820 C 1165 92.53 1387 reject_low 15 ALIGNMENT 0 Y12-3e13.q1k chr15 62 1064 1089264 1089263 F 1003 0.00 1387 reject_low 199 ALIGNMENT 50 Y12-3e13.q1k chr10 1011 922 1752 1842 C 90 86.67 1387 reject_low 166 ALIGNMENT 0 Y12-3e13.q1k chr15 62 902 1089425 1089424 F 841 0.00 1387 reject_low 155 ALIGNMENT 43 Y12-3e13.q1k chr12 922 1057 1069853 1069990 F 136 78.68 1387 reject_low 248 ALIGNMENT 0 Y12-3e13.q1k chr05 62 921 575144 575143 F 860 0.00 1387 reject_low 168 ALIGNMENT 112 Y12-3e13.q1k chr12 1133 903 7468 7698 C 231 84.42 1387 reject_low 49 ALIGNMENT 59 Y12-3e13.q1k chr12 907 1011 1076393 1076498 F 105 86.67 1387 reject_low 141 ALIGNMENT 0 Y12-3e13.q1k chr06 902 62 1050 1049 C 841 0.00 1387 reject_low 102 ALIGNMENT 45 Y12-3e13.q1k chr05 1017 918 1655 1755 C 100 83.00 1387 reject_low 179 ALIGNMENT 112 Y12-3e13.q1k chr12 1133 903 1933 2163 C 231 84.42 1387 reject_low 48 ALIGNMENT 47 Y12-3e13.q1k chr09 1011 922 1805 1895 C 90 85.56 1387 reject_low 176 ALIGNMENT 0 Y12-3e13.q1k chr14 921 62 1748 1747 C 860 0.00 1387 reject_low 178 ALIGNMENT 48 Y12-3e13.q1k chr10 1009 907 1718 1821 C 103 83.50 1387 reject_low 164 ALIGNMENT 0 Y12-3e13.q1k chr10 906 62 2110 2109 C 845 0.00 1387 reject_low 40 ALIGNMENT 81 Y12-3e13.q1k chr02 1133 901 1700 1932 C 233 79.83 1387 reject_low 71 ALIGNMENT 41 Y12-3e13.q1k chr12 922 1011 1076588 1076678 F 90 83.33 1387 reject_low 206 ALIGNMENT 0 Y12-3e13.q1k chr16 62 906 946378 946377 F 845 0.00 1387 reject_low 191 ALIGNMENT 687 Y12-3e13.p1k chr13 270 1168 4219 5129 F 899 93.99 1432 reject_low 21 ALIGNMENT 109 Y12-3e13.q1k chr15 903 1133 1089281 1089511 F 231 83.98 1387 reject_low 57 ALIGNMENT 57 Y12-3e13.q1k chr10 1151 983 2044 2212 C 169 79.88 1387 reject_low 235 ALIGNMENT 42 Y12-3e13.q1k chr12 903 1126 1076461 1076684 F 224 74.55 1387 reject_low 153 ALIGNMENT 0 Y12-3e13.q1k chr05 902 62 1915 1914 C 841 0.00 1387 reject_low 73 ALIGNMENT 37 Y12-3e13.q1k chr12 922 1062 1069889 1070031 F 141 76.60 1387 reject_low 250 ALIGNMENT 41 Y12-3e13.q1k chr12 1011 922 7337 7427 C 90 83.33 1387 reject_low 251 ALIGNMENT 98 Y12-3e13.q1k chr09 1187 922 1767 2039 C 266 81.58 1387 reject_low 37 ALIGNMENT 91 Y12-3e13.q1k chr09 1133 903 1972 2202 C 231 81.39 1387 reject_low 65 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 2056 2055 C 841 0.00 1387 reject_low 43 ALIGNMENT 37 Y12-3e13.q1k chr13 1062 922 1662 1804 C 141 76.60 1387 reject_low 187 ALIGNMENT 0 Y12-3e13.q1k chr16 921 62 1585 1584 C 860 0.00 1387 reject_low 209 ALIGNMENT 70 Y12-3e13.q1k chr08 903 1043 560505 560647 F 141 84.40 1387 reject_low 101 ALIGNMENT 0 Y12-3e13.q1k chr09 902 62 2023 2022 C 841 0.00 1387 reject_low 116 ALIGNMENT 0 Y12-3e13.q1k chr08 62 982 560442 560441 F 921 0.00 1387 reject_low 70 ALIGNMENT 0 Y12-3e13.q1k chr05 902 62 1807 1806 C 841 0.00 1387 reject_low 162 ALIGNMENT 22 Y12-3e13.q1k chr07 1065 1116 1089005 1089055 F 52 82.69 1387 reject_low 194 ALIGNMENT 42 Y12-3e13.q1k chr16 1126 903 1488 1711 C 224 74.55 1387 reject_low 156 ALIGNMENT 86 Y12-3e13.q1k chr02 1151 903 2077 2326 C 249 79.92 1387 reject_low 59 ALIGNMENT 0 Y12-3e13.q1k chr02 1064 1044 1696 1751 C 21 0.00 1387 reject_low 239 ALIGNMENT 0 Y12-3e13.q1k chr12 62 921 1069925 1069924 F 860 0.00 1387 reject_low 252 ALIGNMENT 0 Y12-3e13.q1k chr15 62 902 1089281 1089280 F 841 0.00 1387 reject_low 57 ALIGNMENT 0 Y12-3e13.q1k chr09 902 62 2203 2202 C 841 0.00 1387 reject_low 65 ALIGNMENT 60 Y12-3e13.q1k chr02 1043 922 1644 1767 C 122 84.43 1387 reject_low 129 ALIGNMENT 72 Y12-3e13.q1k chr08 907 1009 560581 560684 F 103 91.26 1387 reject_low 104 ALIGNMENT 78 Y12-3e13.q1k chr02 1011 903 1749 1858 C 109 91.74 1387 reject_low 236 ALIGNMENT 0 Y12-3e13.q1k chr02 906 62 2107 2106 C 845 0.00 1387 reject_low 233 ALIGNMENT 0 Y12-3e13.q1k chr12 1044 1064 1069833 1076299 F 21 0.00 1387 reject_low 244 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 7663 7662 C 841 0.00 1387 reject_low 242 ALIGNMENT 66 Y12-3e13.q1k chr02 1126 922 1491 1695 C 205 79.02 1387 reject_low 79 ALIGNMENT 900 Y12-3e13.q1k chr05 27 1133 574020 575139 F 1107 94.22 1387 reject_low 6 ALIGNMENT 903 Y12-3e13.q1k chr12 1133 27 1969 3088 C 1107 94.31 1387 reject_low 3 ALIGNMENT 0 Y12-3e13.q1k chr08 62 921 560740 560739 F 860 0.00 1387 reject_low 215 ALIGNMENT 0 Y12-3e13.q1k chr05 900 62 1953 1952 C 839 0.00 1387 reject_low 60 ALIGNMENT 0 Y12-3e13.q1k chr12 62 921 1069853 1069852 F 860 0.00 1387 reject_low 248 ALIGNMENT 689 Y12-3e13.p1k chr12 1168 270 1072059 1072970 C 899 93.99 1432 ambiguous_tel 1 ALIGNMENT 0 Y12-3e13.q1k chr05 62 902 575089 575088 F 841 0.00 1387 reject_low 149 ALIGNMENT 76 Y12-3e13.q1k chr14 1009 903 1731 1838 C 107 91.59 1387 reject_low 98 ALIGNMENT 0 Y12-3e13.q1k chr04 62 906 1530192 1530191 F 845 0.00 1387 reject_low 137 ALIGNMENT 58 Y12-3e13.q1k chr13 1043 903 1861 2003 C 141 81.56 1387 reject_low 125 ALIGNMENT 22 Y12-3e13.q1k chr05 1116 939 1881 2058 C 178 72.47 1387 reject_low 227 ALIGNMENT 0 Y12-3e13.q1k chr12 1012 1064 1070016 1076299 F 53 0.00 1387 reject_low 252 ALIGNMENT 0 Y12-3e13.q1k chr16 62 902 946050 946049 F 841 0.00 1387 reject_low 128 ALIGNMENT 45 Y12-3e13.q1k chr02 1116 903 1933 2146 C 214 75.23 1387 reject_low 135 ALIGNMENT 77 Y12-3e13.q1k chr02 1081 907 1931 2106 C 175 82.86 1387|8,0 reject_low 233 ALIGNMENT 76 Y12-3e13.q1k chr02 1133 903 1736 1966 C 231 79.22 1387 reject_low 74 ALIGNMENT 0 Y12-3e13.q1k chr12 1010 1064 1069870 1076299 F 55 0.00 1387 reject_low 238 ALIGNMENT 85 Y12-3e13.q1k chr08 903 1133 560469 560699 F 231 80.52 1387 reject_low 68 ALIGNMENT 0 Y12-3e13.q1k chr05 62 921 575216 575215 F 860 0.00 1387 reject_low 203 ALIGNMENT 76 Y12-3e13.q1k chr04 903 1009 1530224 1530331 F 107 91.59 1387 reject_low 93 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 2219 2218 C 841 0.00 1387 reject_low 241 ALIGNMENT 43 Y12-3e13.q1k chr12 1057 922 7362 7499 C 136 78.68 1387 reject_low 247 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 2327 2326 C 841 0.00 1387 reject_low 59 ALIGNMENT 48 Y12-3e13.q1k chr05 1011 903 1697 1806 C 109 82.57 1387 reject_low 162 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 1058 2181 7361 C 7 0.00 1387 reject_low 247 ALIGNMENT 34 Y12-3e13.q1k chr06 952 903 892 941 C 50 90.00 1387 reject_low 213 ALIGNMENT 0 Y12-3e13.q1k chr07 62 902 1089022 1089021 F 841 0.00 1387 reject_low 47 ALIGNMENT 57 Y12-3e13.q1k chr05 1062 907 1465 1622 C 156 80.13 1387 reject_low 121 ALIGNMENT 0 Y12-3e13.q1k chr13 902 62 1896 1895 C 841 0.00 1387 reject_low 154 ALIGNMENT 124 Y12-3e13.q1k chr02 1158 901 1745 2004 C 258 84.50 1387 reject_low 41 ALIGNMENT 675 Y12-3e13.p1k chr08 270 1122 4075 4932 F 853 94.61 1432 reject_low 33 ALIGNMENT 22 Y12-3e13.q1k chr12 1065 1116 1069637 1069687 F 52 82.69 1387 reject_low 196 ALIGNMENT 42 Y12-3e13.q1k chr13 1126 903 1672 1895 C 224 74.55 1387 reject_low 154 ALIGNMENT 874 Y12-3e13.q1k chr02 1151 27 2149 3289 C 1125 93.07 1387 reject_low 17 ALIGNMENT 0 Y12-3e13.q1k chr16 902 62 1748 1747 C 841 0.00 1387 reject_low 100 ALIGNMENT 0 Y12-3e13.q1k chr12 1058 1064 1069991 1076299 F 7 0.00 1387 reject_low 248 ALIGNMENT 109 Y12-3e13.q1k chr12 903 1133 1069654 1069884 F 231 83.98 1387 reject_low 55 ALIGNMENT 41 Y12-3e13.q1k chr12 1011 907 1694 1799 C 105 80.95 1387 reject_low 190 ALIGNMENT 42 Y12-3e13.q1k chr12 1126 903 7331 7554 C 224 74.55 1387 reject_low 151 ALIGNMENT 53 Y12-3e13.q1k chr12 983 1072 1069627 1069716 F 90 87.78 1387|0,4 reject_low 240 ALIGNMENT 65 Y12-3e13.q1k chr10 1011 907 1860 1965 C 105 88.57 1387 reject_low 120 ALIGNMENT 47 Y12-3e13.q1k chr10 1011 907 1680 1785 C 105 82.86 1387 reject_low 175 ALIGNMENT 53 Y12-3e13.q1k chr04 983 1072 1530089 1530178 F 90 87.78 1387 reject_low 107 ALIGNMENT 0 Y12-3e13.q1k chr08 62 921 560560 560559 F 860 0.00 1387 reject_low 223 ALIGNMENT 0 Y12-3e13.q1k chr09 921 62 1896 1895 C 860 0.00 1387 reject_low 176 ALIGNMENT 0 Y12-3e13.q1k chr10 900 62 2224 2223 C 839 0.00 1387 reject_low 112 ALIGNMENT 903 Y12-3e13.q1k chr12 1133 27 7504 8623 C 1107 94.31 1387 ambiguous_tel 0 ALIGNMENT 0 Y12-3e13.q1k chr14 902 62 1839 1838 C 841 0.00 1387 reject_low 98 ALIGNMENT 0 Y12-3e13.q1k chr09 902 62 2347 2346 C 841 0.00 1387 reject_low 77 ALIGNMENT 58 Y12-3e13.q1k chr07 903 1043 1089058 1089200 F 141 81.56 1387 reject_low 123 ALIGNMENT 49 Y12-3e13.q1k chr06 976 903 904 977 C 74 89.19 1387 reject_low 161 ALIGNMENT 0 Y12-3e13.q1k chr15 62 902 1089389 1089388 F 841 0.00 1387 reject_low 99 ALIGNMENT 0 Y12-3e13.q1k chr09 906 62 1803 1802 C 845 0.00 1387 reject_low 225 ALIGNMENT 56 Y12-3e13.q1k chr10 1187 907 1786 2073 C 281 75.80 1387 reject_low 64 ALIGNMENT 59 Y12-3e13.q1k chr07 907 1011 1089098 1089203 F 105 86.67 1387 reject_low 139 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 62 7716 7715 C 1003 0.00 1387 reject_low 195 ALIGNMENT 0 Y12-3e13.q1k chr05 921 62 1572 1571 C 860 0.00 1387 reject_low 222 ALIGNMENT 43 Y12-3e13.q1k chr07 922 1057 1089221 1089358 F 136 78.68 1387 reject_low 169 ALIGNMENT 0 Y12-3e13.q1k chr02 906 62 2251 2250 C 845 0.00 1387 reject_low 53 ALIGNMENT 59 Y12-3e13.q1k chr16 1011 907 1674 1779 C 105 86.67 1387 reject_low 145 ALIGNMENT 22 Y12-3e13.q1k chr09 972 899 2253 2326 C 74 77.03 1387 reject_low 234 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 1965 1964 C 860 0.00 1387 reject_low 130 ALIGNMENT 686 Y12-3e13.p1k chr12 270 1156 9878 10773 F 887 94.25 1432 reject_low 29 ALIGNMENT 0 Y12-3e13.q1k chr10 906 62 2074 2073 C 845 0.00 1387 reject_low 64 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 2128 2127 C 841 0.00 1387 reject_low 124 ALIGNMENT 0 Y12-3e13.q1k chr14 906 62 1871 1870 C 845 0.00 1387 reject_low 143 ALIGNMENT 112 Y12-3e13.q1k chr07 903 1133 1089022 1089252 F 231 84.42 1387 reject_low 47 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 1749 1748 C 860 0.00 1387 reject_low 218 ALIGNMENT 58 Y12-3e13.q1k chr05 903 1043 574981 575123 F 141 81.56 1387 reject_low 122 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1076425 1076424 F 841 0.00 1387 reject_low 96 ALIGNMENT 0 Y12-3e13.q1k chr05 62 906 575021 575020 F 845 0.00 1387 reject_low 138 ALIGNMENT 35 Y12-3e13.q1k chr04 922 1017 1530351 1530447 F 96 80.21 1387 reject_low 220 ALIGNMENT 54 Y12-3e13.q1k chr13 1116 983 1934 2066 C 134 82.09 1387 reject_low 86 ALIGNMENT 43 Y12-3e13.q1k chr05 922 1057 575144 575281 F 136 78.68 1387 reject_low 168 ALIGNMENT 0 Y12-3e13.q1k chr08 982 62 1907 1906 C 921 0.00 1387 reject_low 44 ALIGNMENT 0 Y12-3e13.q1k chr05 62 902 574981 574980 F 841 0.00 1387 reject_low 122 ALIGNMENT 0 Y12-3e13.q1k chr12 62 982 1076290 1076289 F 921 0.00 1387 reject_low 108 ALIGNMENT 100 Y12-3e13.q1k chr05 1043 903 1772 1914 C 141 91.49 1387 reject_low 73 ALIGNMENT 58 Y12-3e13.q1k chr12 1043 903 1985 2127 C 141 81.56 1387 reject_low 124 ALIGNMENT 0 Y12-3e13.q1k chr12 62 921 1076588 1076587 F 860 0.00 1387 reject_low 206 ALIGNMENT 0 Y12-3e13.q1k chr05 62 902 575053 575052 F 841 0.00 1387 reject_low 94 ALIGNMENT 41 Y12-3e13.q1k chr16 1011 922 1494 1584 C 90 83.33 1387 reject_low 209 ALIGNMENT 0 Y12-3e13.q1k chr16 902 62 1856 1855 C 841 0.00 1387 reject_low 52 ALIGNMENT 0 Y12-3e13.q1k chr16 62 906 946090 946089 F 845 0.00 1387 reject_low 146 ALIGNMENT 22 Y12-3e13.q1k chr06 972 899 1136 1209 C 74 77.03 1387 reject_low 243 ALIGNMENT 38 Y12-3e13.q1k chr09 1158 903 1765 2022 C 256 73.44 1387 reject_low 116 ALIGNMENT 35 Y12-3e13.q1k chr05 1010 903 1770 1878 C 108 78.70 1387 reject_low 216 ALIGNMENT 0 Y12-3e13.q1k chr02 921 62 2020 2019 C 860 0.00 1387 reject_low 114 ALIGNMENT 579 Y12-3e13.p1k chr05 270 1122 5265 6086 F 853 92.15 1432 reject_low 35 ALIGNMENT 54 Y12-3e13.q1k chr16 1116 983 1750 1882 C 134 82.09 1387 reject_low 88 ALIGNMENT 736 Y12-3e13.p1k chr07 1122 270 1084813 1085675 C 853 96.48 1432 reject_low 24 ALIGNMENT 0 Y12-3e13.q1k chr05 902 62 2023 2022 C 841 0.00 1387 reject_low 106 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1069798 1069797 F 841 0.00 1387 reject_low 152 ALIGNMENT 0 Y12-3e13.q1k chr16 62 982 945987 945986 F 921 0.00 1387 reject_low 89 ALIGNMENT 22 Y12-3e13.q1k chr16 1065 1116 945997 946047 F 52 82.69 1387 reject_low 201 ALIGNMENT 54 Y12-3e13.q1k chr12 1116 983 7593 7725 C 134 82.09 1387 reject_low 85 ALIGNMENT 0 Y12-3e13.q1k chr05 906 62 1695 1694 C 845 0.00 1387 reject_low 158 ALIGNMENT 757 Y12-3e13.p1k chr10 270 1122 5665 6527 F 853 97.30 1432 reject_low 23 ALIGNMENT 0 Y12-3e13.q1k chr04 62 921 1530351 1530350 F 860 0.00 1387 reject_low 220 ALIGNMENT 71 Y12-3e13.q1k chr16 907 1011 946270 946375 F 105 90.48 1387 reject_low 105 ALIGNMENT 0 Y12-3e13.q1k chr16 62 921 946213 946212 F 860 0.00 1387 reject_low 118 ALIGNMENT 0 Y12-3e13.q1k chr04 62 921 1530387 1530386 F 860 0.00 1387 reject_low 229 ALIGNMENT 68 Y12-3e13.q1k chr05 1187 901 1695 1988 C 287 77.00 1387 reject_low 45 ALIGNMENT 0 Y12-3e13.q1k chr05 62 1064 574928 574927 F 1003 0.00 1387 reject_low 193 ALIGNMENT 59 Y12-3e13.q1k chr15 907 1011 1089357 1089462 F 105 86.67 1387 reject_low 144 ALIGNMENT 0 Y12-3e13.q1k chr13 921 62 1841 1840 C 860 0.00 1387 reject_low 172 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 2363 2362 C 841 0.00 1387 reject_low 72 ALIGNMENT 0 Y12-3e13.q1k chr09 921 62 2040 2039 C 860 0.00 1387 reject_low 37 ALIGNMENT 900 Y12-3e13.q1k chr14 1133 27 1752 2871 C 1107 94.22 1387 reject_low 8 ALIGNMENT 37 Y12-3e13.q1k chr05 922 1062 575180 575322 F 141 76.60 1387 reject_low 185 ALIGNMENT 59 Y12-3e13.q1k chr10 1043 901 2079 2223 C 143 81.82 1387 reject_low 112 ALIGNMENT 0 Y12-3e13.q1k chr16 62 921 946429 946428 F 860 0.00 1387 reject_low 219 ALIGNMENT 38 Y12-3e13.q1k chr10 1158 903 1748 2005 C 256 73.44 1387 reject_low 117 ALIGNMENT 41 Y12-3e13.q1k chr12 922 1011 1069925 1070015 F 90 83.33 1387 reject_low 252 ALIGNMENT 57 Y12-3e13.q1k chr09 1151 983 2061 2229 C 169 79.88 1387 reject_low 234 ALIGNMENT 37 Y12-3e13.q1k chr02 1062 922 1481 1623 C 141 76.60 1387 reject_low 184 ALIGNMENT 37 Y12-3e13.q1k chr16 922 983 946429 946490 F 62 87.10 1387 reject_low 219 ALIGNMENT 84 Y12-3e13.q1k chr02 1116 903 2149 2362 C 214 81.31 1387 reject_low 72 ALIGNMENT 98 Y12-3e13.q1k chr10 1187 922 1750 2022 C 266 81.58 1387 reject_low 38 ALIGNMENT 0 Y12-3e13.q1k chr06 906 62 1010 1009 C 845 0.00 1387 reject_low 136 ALIGNMENT 42 Y12-3e13.q1k chr05 903 1126 575089 575312 F 224 74.55 1387 reject_low 149 ALIGNMENT 43 Y12-3e13.q1k chr04 903 1009 1530260 1530367 F 107 81.31 1387 reject_low 180 ALIGNMENT 76 Y12-3e13.q1k chr15 903 1009 1089389 1089496 F 107 91.59 1387 reject_low 99 ALIGNMENT 59 Y12-3e13.q1k chr13 1011 907 1858 1963 C 105 86.67 1387 reject_low 142 ALIGNMENT 0 Y12-3e13.q1k chr10 921 62 1735 1734 C 860 0.00 1387 reject_low 231 ALIGNMENT 0 Y12-3e13.q1k chr04 62 921 1530315 1530314 F 860 0.00 1387 reject_low 167 ALIGNMENT 0 Y12-3e13.q1k chr07 62 921 1089257 1089256 F 860 0.00 1387 reject_low 211 ALIGNMENT 50 Y12-3e13.q1k chr09 1011 922 1769 1859 C 90 86.67 1387 reject_low 165 ALIGNMENT 0 Y12-3e13.q1k chr02 900 62 2005 2004 C 839 0.00 1387 reject_low 41 ALIGNMENT 0 Y12-3e13.q1k chr12 62 1064 1069637 1069636 F 1003 0.00 1387 reject_low 196 ALIGNMENT 0 Y12-3e13.q1k chr15 62 902 1089317 1089316 F 841 0.00 1387 reject_low 134 ALIGNMENT 871 Y12-3e13.q1k chr08 27 1133 559542 560663 F 1107 93.41 1387 reject_low 16 ALIGNMENT 0 Y12-3e13.q1k chr08 921 62 1753 1752 C 860 0.00 1387 reject_low 205 ALIGNMENT 0 Y12-3e13.q1k chr05 902 62 1879 1878 C 841 0.00 1387 reject_low 216 ALIGNMENT 687 Y12-3e13.p1k chr12 270 1168 4343 5253 F 899 93.99 1432 ambiguous_tel 0 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1076317 1076316 F 841 0.00 1387 reject_low 56 ALIGNMENT 47 Y12-3e13.q1k chr09 1043 901 2132 2276 C 143 79.02 1387 reject_low 159 ALIGNMENT 54 Y12-3e13.q1k chr16 983 1116 945987 946119 F 134 82.09 1387 reject_low 89 ALIGNMENT 52 Y12-3e13.q1k chr12 1062 922 1678 1820 C 141 80.14 1387 reject_low 147 ALIGNMENT 717 Y12-3e13.p1k chr02 270 1122 4544 5411 F 853 95.78 1432 reject_low 30 ALIGNMENT 91 Y12-3e13.q1k chr06 1116 901 908 1123 C 216 82.41 1387 reject_low 67 ALIGNMENT 112 Y12-3e13.q1k chr13 1133 903 1809 2039 C 231 84.42 1387 reject_low 50 ALIGNMENT 59 Y12-3e13.q1k chr12 1011 907 7517 7622 C 105 86.67 1387 reject_low 245 ALIGNMENT 0 Y12-3e13.q1k chr02 982 62 2390 2389 C 921 0.00 1387 reject_low 69 ALIGNMENT 53 Y12-3e13.q1k chr05 1017 907 1583 1694 C 111 83.78 1387 reject_low 158 ALIGNMENT 44 Y12-3e13.q1k chr09 1182 903 2061 2346 C 280 74.29 1387 reject_low 77 ALIGNMENT 0 Y12-3e13.q1k chr13 1064 62 2057 2056 C 1003 0.00 1387 reject_low 197 ALIGNMENT 0 Y12-3e13.q1k chr02 1064 1044 1696 2039 C 21 0.00 1387 reject_low 232 ALIGNMENT 0 Y12-3e13.q1k chr02 1073 1074 1687 1938 C 0 0.00 1387 reject_low 233 ALIGNMENT 22 Y12-3e13.q1k chr12 1116 1065 2130 2180 C 52 82.69 1387 reject_low 237,242,245,247,249,251 ALIGNMENT 0 Y12-3e13.q1k chr02 902 62 1823 1822 C 841 0.00 1387 reject_low 81 ALIGNMENT 109 Y12-3e13.q1k chr04 903 1133 1530116 1530346 F 231 83.98 1387 reject_low 54 ALIGNMENT 0 Y12-3e13.q1k chr15 62 921 1089480 1089479 F 860 0.00 1387 reject_low 173 ALIGNMENT 0 Y12-3e13.q1k chr16 62 1064 945997 945996 F 1003 0.00 1387 reject_low 201 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1069654 1069653 F 841 0.00 1387 reject_low 55 ALIGNMENT 76 Y12-3e13.q1k chr12 1009 903 7483 7590 C 107 91.59 1387 reject_low 237 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 7500 7499 C 860 0.00 1387 reject_low 247 ALIGNMENT 0 Y12-3e13.q1k chr04 62 902 1530152 1530151 F 841 0.00 1387 reject_low 132 ALIGNMENT 37 Y12-3e13.q1k chr05 983 922 1474 1535 C 62 87.10 1387 reject_low 217 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1076461 1076460 F 841 0.00 1387 reject_low 153 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 7464 7463 C 860 0.00 1387 reject_low 249 ALIGNMENT 0 Y12-3e13.q1k chr02 900 62 1933 1932 C 839 0.00 1387 reject_low 71 ALIGNMENT 0 Y12-3e13.q1k chr10 900 62 2260 2259 C 839 0.00 1387 reject_low 160 ALIGNMENT 0 Y12-3e13.q1k chr07 62 982 1088995 1088994 F 921 0.00 1387 reject_low 83 ALIGNMENT 52 Y12-3e13.q1k chr16 922 1062 946357 946499 F 141 80.14 1387 reject_low 148 ALIGNMENT 59 Y12-3e13.q1k chr09 1043 901 2096 2240 C 143 81.82 1387 reject_low 111 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 1929 1928 C 860 0.00 1387 reject_low 228 ALIGNMENT 43 Y12-3e13.q1k chr13 1057 922 1703 1840 C 136 78.68 1387 reject_low 172 ALIGNMENT 0 Y12-3e13.q1k chr14 902 62 1803 1802 C 841 0.00 1387 reject_low 182 ALIGNMENT 0 Y12-3e13.q1k chr09 906 62 1983 1982 C 845 0.00 1387 reject_low 119 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 7591 7590 C 841 0.00 1387 reject_low 237 ALIGNMENT 37 Y12-3e13.q1k chr12 922 1062 1076552 1076694 F 141 76.60 1387 reject_low 186 ALIGNMENT 54 Y12-3e13.q1k chr06 1077 983 1018 1112 C 95 87.37 1387 reject_low 243 ALIGNMENT 0 Y12-3e13.q1k chr02 912 62 1669 1668 C 851 0.00 1387 reject_low 157 ALIGNMENT 0 Y12-3e13.q1k chr12 62 906 1076393 1076392 F 845 0.00 1387 reject_low 141 ALIGNMENT 41 Y12-3e13.q1k chr05 922 1011 575216 575306 F 90 83.33 1387 reject_low 203 ALIGNMENT 64 Y12-3e13.q1k chr02 1043 903 1752 1894 C 141 82.98 1387 reject_low 239 ALIGNMENT 0 Y12-3e13.q1k chr02 921 62 1768 1767 C 860 0.00 1387 reject_low 129 ALIGNMENT 22 Y12-3e13.q1k chr04 1065 1116 1530099 1530149 F 52 82.69 1387 reject_low 192 ALIGNMENT 0 Y12-3e13.q1k chr02 1064 1012 1696 1748 C 53 0.00 1387 reject_low 236 ALIGNMENT 71 Y12-3e13.q1k chr08 1057 899 1687 1847 C 159 83.02 1387 reject_low 80 ALIGNMENT 22 Y12-3e13.q1k chr12 1065 1116 1076300 1076350 F 52 82.69 1387|4,0 reject_low 238,240,244,246,248,250,252 ALIGNMENT 0 Y12-3e13.q1k chr12 902 62 7699 7698 C 841 0.00 1387 reject_low 49 ALIGNMENT 52 Y12-3e13.q1k chr02 1057 913 1522 1668 C 145 80.00 1387 reject_low 157 ALIGNMENT 22 Y12-3e13.q1k chr16 1116 1065 1822 1872 C 52 82.69 1387 reject_low 200 ALIGNMENT 45 Y12-3e13.q1k chr08 1024 1182 560448 560610 F 159 79.25 1387 reject_low 62 ALIGNMENT 76 Y12-3e13.q1k chr13 1009 903 1824 1931 C 107 91.59 1387 reject_low 97 ALIGNMENT 39 Y12-3e13.q1k chr05 1009 922 1627 1715 C 88 82.95 1387 reject_low 214 ALIGNMENT 731 Y12-3e13.p1k chr06 270 1114 3380 4234 F 845 96.57 1432 reject_low 28 ALIGNMENT 42 Y12-3e13.q1k chr07 903 1126 1089166 1089389 F 224 74.55 1387 reject_low 150 ALIGNMENT 58 Y12-3e13.q1k chr16 903 1043 946050 946192 F 141 81.56 1387 reject_low 128 ALIGNMENT 0 Y12-3e13.q1k chr12 982 62 7726 7725 C 921 0.00 1387 reject_low 85 ALIGNMENT 900 Y12-3e13.q1k chr16 1133 27 1661 2780 C 1107 94.22 1387 reject_low 9 ALIGNMENT 689 Y12-3e13.p1k chr04 1168 270 1525858 1526769 C 899 93.99 1432 reject_low 19 ALIGNMENT 0 Y12-3e13.q1k chr07 62 1064 1089005 1089004 F 1003 0.00 1387 reject_low 194 ALIGNMENT 95 Y12-3e13.q1k chr09 1187 907 1839 2126 C 281 80.43 1387 reject_low 39 ALIGNMENT 903 Y12-3e13.q1k chr16 27 1133 945089 946208 F 1107 94.31 1387 reject_low 5 ALIGNMENT 0 Y12-3e13.q1k chr07 62 902 1089058 1089057 F 841 0.00 1387 reject_low 123 ALIGNMENT 0 Y12-3e13.q1k chr02 921 62 1624 1623 C 860 0.00 1387 reject_low 184 ALIGNMENT 0 Y12-3e13.q1k chr05 921 62 1536 1535 C 860 0.00 1387 reject_low 217 ALIGNMENT 900 Y12-3e13.q1k chr07 27 1133 1088097 1089216 F 1107 94.22 1387 reject_low 7 ALIGNMENT 0 Y12-3e13.q1k chr09 906 62 2127 2126 C 845 0.00 1387 reject_low 39 ALIGNMENT 63 Y12-3e13.q1k chr12 1156 903 1764 2019 C 254 76.77 1387 reject_low 75 ALIGNMENT 21 Y12-3e13.q1k chr08 1115 1065 1847 1896 C 51 82.35 1387 reject_low 210 ALIGNMENT 36 Y12-3e13.q1k chr07 922 1043 1089257 1089380 F 122 77.87 1387 reject_low 211 ALIGNMENT 0 Y12-3e13.q1k chr02 921 62 1588 1587 C 860 0.00 1387 reject_low 202 ALIGNMENT 0 Y12-3e13.q1k chr10 902 62 2150 2149 C 841 0.00 1387 reject_low 92 ALIGNMENT 71 Y12-3e13.q1k chr08 1182 983 1702 1906 C 200 81.50 1387 reject_low 44 ALIGNMENT 63 Y12-3e13.q1k chr02 1151 983 2221 2389 C 169 81.07 1387 reject_low 69 ALIGNMENT 41 Y12-3e13.q1k chr16 907 1011 946378 946483 F 105 80.95 1387 reject_low 191 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1069690 1069689 F 841 0.00 1387 reject_low 244 ALIGNMENT 0 Y12-3e13.q1k chr09 921 62 1860 1859 C 860 0.00 1387 reject_low 165 ALIGNMENT 27 Y12-3e13.q1k chr14 976 922 1621 1675 C 55 83.64 1387 reject_low 230 ALIGNMENT 736 Y12-3e13.p1k chr14 270 1122 5293 6155 F 853 96.48 1432 reject_low 25 ALIGNMENT 85 Y12-3e13.q1k chr12 1188 903 1763 2055 C 286 79.02 1387 reject_low 43 ALIGNMENT 0 Y12-3e13.q1k chr15 62 982 1089254 1089253 F 921 0.00 1387 reject_low 109 ALIGNMENT 0 Y12-3e13.q1k chr05 906 62 1839 1838 C 845 0.00 1387 reject_low 110 ALIGNMENT 32 Y12-3e13.q1k chr16 922 1011 946249 946339 F 90 80.00 1387 reject_low 226 ALIGNMENT 0 Y12-3e13.q1k chr09 902 62 2167 2166 C 841 0.00 1387 reject_low 91 ALIGNMENT 0 Y12-3e13.q1k chr12 1069 1068 1069713 1076303 F 0 0.00 1387 reject_low 240 ALIGNMENT 54 Y12-3e13.q1k chr05 983 1116 574918 575050 F 134 82.09 1387 reject_low 82 ALIGNMENT 55 Y12-3e13.q1k chr12 903 1043 1069690 1069832 F 141 80.85 1387 reject_low 244 ALIGNMENT 0 Y12-3e13.q1k chr02 1023 62 2384 2383 C 962 0.00 1387 reject_low 61 ALIGNMENT 0 Y12-3e13.q1k chr12 1064 1012 2181 7516 C 53 0.00 1387 reject_low 245 ALIGNMENT 0 Y12-3e13.q1k chr05 62 982 574918 574917 F 921 0.00 1387 reject_low 82 ALIGNMENT 63 Y12-3e13.q1k chr08 983 1151 560442 560610 F 169 81.07 1387 reject_low 70 ALIGNMENT 22 Y12-3e13.q1k chr12 1116 1065 7665 7715 C 52 82.69 1387 reject_low 195 ALIGNMENT 0 Y12-3e13.q1k chr08 1064 62 1897 1896 C 1003 0.00 1387 reject_low 210 ALIGNMENT 0 Y12-3e13.q1k chr16 1064 62 1873 1872 C 1003 0.00 1387 reject_low 200 ALIGNMENT 712 Y12-3e13.p1k chr08 1122 270 557421 558287 C 853 95.66 1432 reject_low 31 ALIGNMENT 35 Y12-3e13.q1k chr08 922 1011 560560 560650 F 90 81.11 1387 reject_low 223 ALIGNMENT 47 Y12-3e13.q1k chr10 1011 922 1788 1878 C 90 85.56 1387 reject_low 177 ALIGNMENT 0 Y12-3e13.q1k chr16 921 62 1621 1620 C 860 0.00 1387 reject_low 189 ALIGNMENT 59 Y12-3e13.q1k chr12 1011 907 1982 2087 C 105 86.67 1387 reject_low 140 ALIGNMENT 0 Y12-3e13.q1k chr06 898 62 1210 1209 C 837 0.00 1387 reject_low 243 ALIGNMENT 0 Y12-3e13.q1k chr12 62 902 1076353 1076352 F 841 0.00 1387 reject_low 133 ALIGNMENT 110 Y12-3e13.q1k chr16 903 1182 946014 946299 F 280 82.50 1387 reject_low 36 ALIGNMENT 0 Y12-3e13.q1k chr02 906 62 2179 2178 C 845 0.00 1387 reject_low 232 ALIGNMENT 894 Y12-3e13.q1k chr15 27 1133 1088356 1089475 F 1107 94.04 1387 reject_low 14 ALIGNMENT 0 Y12-3e13.q1k chr08 62 902 560505 560504 F 841 0.00 1387 reject_low 101 ALIGNMENT 0 Y12-3e13.q1k chr08 62 902 560613 560612 F 841 0.00 1387 reject_low 181 ALIGNMENT 76 Y12-3e13.q1k chr12 903 1009 1069762 1069869 F 107 91.59 1387 reject_low 238 ALIGNMENT 41 Y12-3e13.q1k chr13 1011 922 1678 1768 C 90 83.33 1387 reject_low 207 ALIGNMENT 0 Y12-3e13.q1k chr02 1071 1072 1689 2048 C 0 0.00 1387 reject_low 241 ALIGNMENT 109 Y12-3e13.q1k chr12 903 1133 1076317 1076547 F 231 83.98 1387 reject_low 56 ALIGNMENT 58 Y12-3e13.q1k chr14 1043 903 1768 1910 C 141 81.56 1387 reject_low 126 ALIGNMENT 0 Y12-3e13.q1k chr07 62 921 1089293 1089292 F 860 0.00 1387 reject_low 204 ALIGNMENT 0 Y12-3e13.q1k chr12 921 62 1821 1820 C 860 0.00 1387 reject_low 147 ALIGNMENT 0 Y12-3e13.q1k chr14 921 62 1712 1711 C 860 0.00 1387 reject_low 221 ALIGNMENT 88 Y12-3e13.q1k chr16 903 1188 946122 946414 F 286 79.37 1387 reject_low 42 ALIGNMENT 111 Y12-3e13.q1k chr02 1133 907 2024 2250 C 227 84.58 1387 reject_low 53 ALIGNMENT 59 Y12-3e13.q1k chr04 907 1011 1530192 1530297 F 105 86.67 1387 reject_low 137 ALIGNMENT 55 Y12-3e13.q1k chr04 903 1043 1530152 1530294 F 141 80.85 1387 reject_low 132 ALIGNMENT 59 Y12-3e13.q1k chr12 907 1011 1069730 1069835 F 105 86.67 1387 reject_low 246 ALIGNMENT 0 Y12-3e13.q1k chr09 906 62 1839 1838 C 845 0.00 1387 reject_low 163 ALIGNMENT 42 Y12-3e13.q1k chr15 903 1126 1089425 1089648 F 224 74.55 1387 reject_low 155 ALIGNMENT 0 Y12-3e13.q1k chr06 900 62 1124 1123 C 839 0.00 1387 reject_low 67 ALIGNMENT 76 Y12-3e13.q1k chr05 903 1009 575053 575160 F 107 91.59 1387 reject_low 94 ALIGNMENT 894 Y12-3e13.q1k chr12 27 1133 1068729 1069848 F 1107 94.04 1387 ambiguous_tel 1 ALIGNMENT 0 Y12-3e13.q1k chr05 906 62 1623 1622 C 845 0.00 1387 reject_low 121 ALIGNMENT 55 Y12-3e13.q1k chr06 1116 901 944 1159 C 216 76.85 1387 reject_low 103 ALIGNMENT 41 Y12-3e13.q1k chr07 922 1011 1089293 1089383 F 90 83.33 1387 reject_low 204 ALIGNMENT 736 Y12-3e13.p1k chr16 270 1122 5202 6064 F 853 96.48 1432 reject_low 26 ALIGNMENT 0 Y12-3e13.q1k chr02 921 62 1696 1695 C 860 0.00 1387 reject_low 79 ALIGNMENT 0 Y12-3e13.q1k chr09 900 62 2277 2276 C 839 0.00 1387 reject_low 159 ALIGNMENT 0 Y12-3e13.q1k chr10 921 62 2023 2022 C 860 0.00 1387 reject_low 38 ALIGNMENT 0 Y12-3e13.q1k chr08 62 1023 560448 560447 F 962 0.00 1387 reject_low 62 ALIGNMENT 0 Y12-3e13.q1k chr14 902 62 1947 1946 C 841 0.00 1387 reject_low 51 ALIGNMENT 43 Y12-3e13.q1k chr04 922 1057 1530315 1530452 F 136 78.68 1387 reject_low 167 ALIGNMENT 0 Y12-3e13.q1k chr10 906 62 1786 1785 C 845 0.00 1387 reject_low 175 ALIGNMENT 903 Y12-3e13.q1k chr09 1187 27 2091 3259 C 1161 93.11 1387 reject_low 11 ALIGNMENT 0 Y12-3e13.q1k chr16 902 62 1712 1711 C 841 0.00 1387 reject_low 156 ALIGNMENT 0 Y12-3e13.q1k chr13 982 62 2067 2066 C 921 0.00 1387 reject_low 86 ALIGNMENT 0 Y12-3e13.q1k chr09 898 62 2327 2326 C 837 0.00 1387 reject_low 234 ALIGNMENT 37 Y12-3e13.q1k chr12 1062 922 7321 7463 C 141 76.60 1387 reject_low 249 ALIGNMENT 0 Y12-3e13.q1k chr14 902 62 1911 1910 C 841 0.00 1387 reject_low 126 ALIGNMENT 33 Y12-3e13.q1k chr05 1009 922 1555 1643 C 88 80.68 1387 reject_low 224 ALIGNMENT 0 Y12-3e13.q1k chr06 902 62 942 941 C 841 0.00 1387 reject_low 213 ALIGNMENT 0 Y12-3e13.q1k chr04 62 902 1530224 1530223 F 841 0.00 1387 reject_low 93 ALIGNMENT 257 Y12-3e14.p1k chr10 900 435 21967 22433 C 466 86.05 1332 accept 0 ALIGNMENT 959 Y12-3e15.q1k chr14 1090 30 684156 685224 C 1061 97.83 1360 accept 0 ALIGNMENT 797 Y12-3e15.p1k chr14 297 1247 680887 681848 F 951 96.11 1565 accept 0 ALIGNMENT 93 Y12-3e15.p1k chr03 620 1036 243046 243462 F 417 75.06 1565 reject_low 1 ALIGNMENT 0 Y12-3e15.p1k chr03 362 619 243046 243045 F 258 0.00 1565 reject_low 1 ALIGNMENT 983 Y12-3e16.q1k chr10 1144 37 222162 223274 C 1108 97.29 1352 accept 0 ALIGNMENT 982 Y12-3e16.p1k chr10 22 1206 217023 218225 F 1185 95.70 1365 accept 0 ALIGNMENT 0 Y12-3e17.q1k chr01 860 637 165848 165847 C 224 0.00 1285 ambiguous_trans 21 ALIGNMENT 0 Y12-3e17.q1k chr15 62 686 123289 123288 F 625 0.00 1285 ambiguous_trans 33 ALIGNMENT 0 Y12-3e17.q1k chr15 718 860 123319 123318 F 143 0.00 1285 ambiguous_trans 33 ALIGNMENT 0 Y12-3e17.q1k chr01 860 637 160260 160259 C 224 0.00 1285 ambiguous_trans 19 ALIGNMENT 578 Y12-3e17.q1k chr07 658 29 817396 818026 C 630 99.37 1285 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-3e17.q1k chr06 62 686 137907 137906 F 625 0.00 1285 ambiguous_trans 40 ALIGNMENT 0 Y12-3e17.q1k chr13 686 62 373035 373034 C 625 0.00 1285 ambiguous_trans 31 ALIGNMENT 550 Y12-3e17.q1k chr08 656 45 543610 544221 C 612 98.69 1285 ambiguous_trans 8 ALIGNMENT 0 Y12-3e17.q1k chr07 718 860 541381 541380 F 143 0.00 1285 ambiguous_trans 26 ALIGNMENT 0 Y12-3e17.q1k chr08 860 718 549609 549608 C 143 0.00 1285 ambiguous_trans 38 ALIGNMENT 0 Y12-3e17.q1k chr06 589 588 137906 143869 F 0 0.00 1285 ambiguous_trans 47 ALIGNMENT 0 Y12-3e17.q1k chr06 659 860 143939 143938 F 202 0.00 1285 ambiguous_trans 47 ALIGNMENT 30 Y12-3e17.q1k chr14 717 687 96912 96942 C 31 100.00 1285 ambiguous_trans 32 ALIGNMENT 0 Y12-3e17.q1k chr08 860 657 543611 543610 C 204 0.00 1285 ambiguous_trans 8 ALIGNMENT 30 Y12-3e17.q1k chr15 687 717 123289 123319 F 31 100.00 1285 ambiguous_trans 33 ALIGNMENT 0 Y12-3e17.q1k chr06 642 860 158669 158668 F 219 0.00 1285 ambiguous_trans_ua 41 ALIGNMENT 841 Y12-3e17.p1k chr14 1072 116 105749 106724 C 957 97.28 1356 accept_chi 0 ALIGNMENT 0 Y12-3e17.q1k chr06 634 686 138217 143533 F 53 0.00 1285 ambiguous_trans 46 ALIGNMENT 0 Y12-3e17.q1k chr10 718 860 483578 483577 F 143 0.00 1285 ambiguous_trans 27 ALIGNMENT 30 Y12-3e17.q1k chr02 687 717 226623 226653 F 31 100.00 1285 ambiguous_trans 22 ALIGNMENT 370 Y12-3e17.q1k chr05 462 45 492691 493108 C 418 98.09 1285 ambiguous_trans 18 ALIGNMENT 0 Y12-3e17.q1k chr16 860 637 850646 850645 C 224 0.00 1285 ambiguous_trans 16 ALIGNMENT 30 Y12-3e17.q1k chr08 717 687 543912 543942 C 31 100.00 1285 ambiguous_trans 44 ALIGNMENT 22 Y12-3e17.q1k chr06 687 715 137907 137935 F 29 93.10 1285 ambiguous_trans 40 ALIGNMENT 0 Y12-3e17.q1k chr16 62 686 849998 849997 F 625 0.00 1285 ambiguous_trans 35 ALIGNMENT 526 Y12-3e17.q1k chr16 45 659 849719 850339 F 615 97.40 1285 ambiguous_trans 11 ALIGNMENT 0 Y12-3e17.q1k chr07 62 686 541351 541350 F 625 0.00 1285 ambiguous_trans 26 ALIGNMENT 550 Y12-3e17.q1k chr13 45 656 189472 190083 F 612 98.69 1285 ambiguous_trans 9 ALIGNMENT 36 Y12-3e17.q1k chr06 586 658 143867 143939 F 73 86.30 1285|3,0 ambiguous_trans 47 ALIGNMENT 0 Y12-3e17.q1k chr06 62 690 137658 137657 F 629 0.00 1285 ambiguous_trans_ua 39 ALIGNMENT 0 Y12-3e17.q1k chr10 658 860 483887 483886 F 203 0.00 1285 ambiguous_trans 12 ALIGNMENT 0 Y12-3e17.q1k chr15 62 686 600402 600401 F 625 0.00 1285 ambiguous_trans 34 ALIGNMENT 560 Y12-3e17.q1k chr13 636 29 357024 357632 C 608 99.51 1285 ambiguous_trans 6 ALIGNMENT 0 Y12-3e17.q1k chr07 860 718 817701 817700 C 143 0.00 1285 ambiguous_trans 43 ALIGNMENT 257 Y12-3e17.q1k chr06 45 633 143255 143843 F 589 84.04 1285 ambiguous_trans 20 ALIGNMENT 0 Y12-3e17.q1k chr05 686 62 492830 492829 C 625 0.00 1285 ambiguous_trans 25 ALIGNMENT 23 Y12-3e17.q1k chr06 691 717 137658 137684 F 27 96.30 1285 ambiguous_trans_ua 39 ALIGNMENT 0 Y12-3e17.q1k chr16 660 860 850339 850338 F 201 0.00 1285 ambiguous_trans 11 ALIGNMENT 0 Y12-3e17.q1k chr06 716 860 143562 143561 F 145 0.00 1285 ambiguous_trans 46 ALIGNMENT 61 Y12-3e17.q1k chr06 934 855 137474 137554 C 80 90.00 1285 accept_chi 1 ALIGNMENT 0 Y12-3e17.q1k chr16 718 860 850028 850027 F 143 0.00 1285 ambiguous_trans 35 ALIGNMENT 22 Y12-3e17.q1k chr06 687 715 143534 143562 F 29 93.10 1285 ambiguous_trans 46 ALIGNMENT 0 Y12-3e17.q1k chr12 860 718 215390 215389 C 143 0.00 1285 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-3e17.q1k chr06 62 322 137906 137905 F 261 0.00 1285 ambiguous_trans 46 ALIGNMENT 30 Y12-3e17.q1k chr13 687 717 189751 189781 F 31 100.00 1285 ambiguous_trans 29 ALIGNMENT 30 Y12-3e17.q1k chr02 687 717 265160 265190 F 31 100.00 1285 ambiguous_trans 23 ALIGNMENT 576 Y12-3e17.q1k chr15 29 656 600106 600734 F 628 99.36 1285 ambiguous_trans 4 ALIGNMENT 302 Y12-3e17.q1k chr07 656 325 822980 823311 C 332 99.10 1285 ambiguous_trans 43 ALIGNMENT 0 Y12-3e17.q1k chr07 324 62 823312 823311 C 263 0.00 1285 ambiguous_trans 43 ALIGNMENT 0 Y12-3e17.q1k chr13 686 62 357337 357336 C 625 0.00 1285 ambiguous_trans 30 ALIGNMENT 0 Y12-3e17.q1k chr07 634 860 817387 817386 F 227 0.00 1285 ambiguous_trans 42 ALIGNMENT 30 Y12-3e17.q1k chr16 717 687 850933 850963 C 31 100.00 1285 ambiguous_trans 36 ALIGNMENT 545 Y12-3e17.q1k chr14 636 29 96630 97238 C 608 98.68 1285 ambiguous_trans 7 ALIGNMENT 30 Y12-3e17.q1k chr12 717 687 215389 215419 C 31 100.00 1285 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-3e17.q1k chr04 62 686 1101349 1101348 F 625 0.00 1285 ambiguous_trans 24 ALIGNMENT 0 Y12-3e17.q1k chr08 324 62 549638 549637 C 263 0.00 1285 ambiguous_trans 44 ALIGNMENT 0 Y12-3e17.q1k chr04 657 860 1101687 1101686 F 204 0.00 1285 ambiguous_trans 15 ALIGNMENT 0 Y12-3e17.q1k chr07 657 860 541689 541688 F 204 0.00 1285 ambiguous_trans 13 ALIGNMENT 0 Y12-3e17.q1k chr13 62 686 189751 189750 F 625 0.00 1285 ambiguous_trans 29 ALIGNMENT 560 Y12-3e17.q1k chr02 29 636 226327 226935 F 608 99.51 1285 ambiguous_trans 5 ALIGNMENT 523 Y12-3e17.q1k chr07 29 656 541055 541689 F 628 96.66 1285 ambiguous_trans 13 ALIGNMENT 0 Y12-3e17.q1k chr07 687 62 823312 823311 C 626 0.00 1285 ambiguous_trans 37 ALIGNMENT 0 Y12-3e17.q1k chr01 324 62 166164 166163 C 263 0.00 1285 ambiguous_trans 21 ALIGNMENT 0 Y12-3e17.q1k chr02 62 686 226623 226622 F 625 0.00 1285 ambiguous_trans 22 ALIGNMENT 0 Y12-3e17.q1k chr07 860 659 817397 817396 C 202 0.00 1285 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-3e17.q1k chr02 637 860 226935 226934 F 224 0.00 1285 ambiguous_trans 5 ALIGNMENT 23 Y12-3e17.q1k chr16 482 325 850353 850508 C 158 74.68 1285 ambiguous_trans_ua 45 ALIGNMENT 521 Y12-3e17.q1k chr04 45 656 1101070 1101687 F 612 97.22 1285 ambiguous_trans 15 ALIGNMENT 0 Y12-3e17.q1k chr08 686 657 543943 549305 C 30 0.00 1285 ambiguous_trans 44 ALIGNMENT 0 Y12-3e17.q1k chr04 718 860 1101379 1101378 F 143 0.00 1285 ambiguous_trans 24 ALIGNMENT 103 Y12-3e17.q1k chr06 323 633 137906 138216 F 311 81.35 1285 ambiguous_trans 46 ALIGNMENT 0 Y12-3e17.q1k chr07 860 718 823283 823282 C 143 0.00 1285 ambiguous_trans 37 ALIGNMENT 0 Y12-3e17.q1k chr02 62 686 265160 265159 F 625 0.00 1285 ambiguous_trans 23 ALIGNMENT 189 Y12-3e17.q1k chr01 636 325 165847 166163 C 312 89.42 1285 ambiguous_trans 21 ALIGNMENT 157 Y12-3e17.q1k chr06 328 590 137658 137907 F 263 90.87 1285|0,2 ambiguous_trans 47 ALIGNMENT 426 Y12-3e17.q1k chr15 29 636 122993 123607 F 608 92.27 1285 ambiguous_trans 17 ALIGNMENT 0 Y12-3e17.q1k chr16 324 62 850509 850508 C 263 0.00 1285 ambiguous_trans_ua 45 ALIGNMENT 0 Y12-3e17.q1k chr12 686 62 215420 215419 C 625 0.00 1285 ambiguous_trans_ua 28 ALIGNMENT 0 Y12-3e17.q1k chr06 62 327 137658 137657 F 266 0.00 1285 ambiguous_trans 47 ALIGNMENT 0 Y12-3e17.q1k chr12 860 660 215079 215078 C 201 0.00 1285 ambiguous_trans_ua 10 ALIGNMENT 30 Y12-3e17.q1k chr07 687 717 541351 541381 F 31 100.00 1285 ambiguous_trans 26 ALIGNMENT 0 Y12-3e17.q1k chr06 716 860 137935 137934 F 145 0.00 1285 ambiguous_trans 40 ALIGNMENT 30 Y12-3e17.q1k chr13 717 687 373004 373034 C 31 100.00 1285 ambiguous_trans 31 ALIGNMENT 0 Y12-3e17.q1k chr13 860 657 372697 372696 C 204 0.00 1285 ambiguous_trans 14 ALIGNMENT 524 Y12-3e17.q1k chr13 656 45 372696 373313 C 612 97.39 1285 ambiguous_trans 14 ALIGNMENT 0 Y12-3e17.q1k chr08 860 718 543913 543912 C 143 0.00 1285 ambiguous_trans 44 ALIGNMENT 29 Y12-3e17.q1k chr07 717 688 823282 823311 C 30 100.00 1285 ambiguous_trans 37 ALIGNMENT 0 Y12-3e17.q1k chr02 718 860 226653 226652 F 143 0.00 1285 ambiguous_trans 22 ALIGNMENT 54 Y12-3e17.q1k chr07 453 633 817206 817387 F 181 81.22 1285 ambiguous_trans 42 ALIGNMENT 0 Y12-3e17.q1k chr16 860 483 850354 850353 C 378 0.00 1285 ambiguous_trans_ua 45 ALIGNMENT 0 Y12-3e17.q1k chr05 860 463 492692 492691 C 398 0.00 1285 ambiguous_trans 18 ALIGNMENT 0 Y12-3e17.q1k chr16 860 718 850934 850933 C 143 0.00 1285 ambiguous_trans 36 ALIGNMENT 0 Y12-3e17.q1k chr14 860 637 96631 96630 C 224 0.00 1285 ambiguous_trans 7 ALIGNMENT 0 Y12-3e17.q1k chr08 687 62 549638 549637 C 626 0.00 1285 ambiguous_trans 38 ALIGNMENT 30 Y12-3e17.q1k chr05 717 687 492799 492829 C 31 100.00 1285 ambiguous_trans 25 ALIGNMENT 0 Y12-3e17.q1k chr15 718 860 600432 600431 F 143 0.00 1285 ambiguous_trans 34 ALIGNMENT 0 Y12-3e17.q1k chr02 718 860 265190 265189 F 143 0.00 1285 ambiguous_trans 23 ALIGNMENT 0 Y12-3e17.q1k chr07 686 657 817731 822979 C 30 0.00 1285 ambiguous_trans 43 ALIGNMENT 0 Y12-3e17.q1k chr06 634 860 143843 143842 F 227 0.00 1285 ambiguous_trans 20 ALIGNMENT 0 Y12-3e17.q1k chr06 854 62 137555 137554 C 793 0.00 1285 accept_chi 1 ALIGNMENT 0 Y12-3e17.q1k chr13 657 860 190083 190082 F 204 0.00 1285 ambiguous_trans 9 ALIGNMENT 30 Y12-3e17.q1k chr15 687 717 600402 600432 F 31 100.00 1285 ambiguous_trans 34 ALIGNMENT 296 Y12-3e17.q1k chr08 656 325 549306 549637 C 332 98.49 1285 ambiguous_trans 44 ALIGNMENT 0 Y12-3e17.q1k chr06 62 376 158408 158407 F 315 0.00 1285 ambiguous_trans_ua 41 ALIGNMENT 526 Y12-3e17.q1k chr12 659 45 215078 215698 C 615 97.40 1285 ambiguous_trans_ua 10 ALIGNMENT 0 Y12-3e17.q1k chr10 62 686 483548 483547 F 625 0.00 1285 ambiguous_trans 27 ALIGNMENT 0 Y12-3e17.q1k chr05 860 718 492800 492799 C 143 0.00 1285 ambiguous_trans 25 ALIGNMENT 29 Y12-3e17.q1k chr08 717 688 549608 549637 C 30 100.00 1285 ambiguous_trans 38 ALIGNMENT 0 Y12-3e17.q1k chr02 658 860 265493 265492 F 203 0.00 1285 ambiguous_trans 3 ALIGNMENT 505 Y12-3e17.q1k chr16 636 45 850645 851242 C 592 97.30 1285 ambiguous_trans 16 ALIGNMENT 574 Y12-3e17.q1k chr02 29 657 264864 265493 F 629 99.21 1285 ambiguous_trans 3 ALIGNMENT 0 Y12-3e17.q1k chr13 860 718 373005 373004 C 143 0.00 1285 ambiguous_trans 31 ALIGNMENT 0 Y12-3e17.q1k chr13 860 637 357025 357024 C 224 0.00 1285 ambiguous_trans 6 ALIGNMENT 524 Y12-3e17.q1k chr10 29 657 483252 483887 F 629 96.66 1285 ambiguous_trans 12 ALIGNMENT 30 Y12-3e17.q1k chr16 687 717 849998 850028 F 31 100.00 1285 ambiguous_trans 35 ALIGNMENT 0 Y12-3e17.q1k chr15 637 860 123607 123606 F 224 0.00 1285 ambiguous_trans 17 ALIGNMENT 0 Y12-3e17.q1k chr06 718 860 137684 137683 F 143 0.00 1285 ambiguous_trans_ua 39 ALIGNMENT 0 Y12-3e17.q1k chr13 860 718 357307 357306 C 143 0.00 1285 ambiguous_trans 30 ALIGNMENT 30 Y12-3e17.q1k chr04 687 717 1101349 1101379 F 31 100.00 1285 ambiguous_trans 24 ALIGNMENT 0 Y12-3e17.q1k chr16 686 62 850964 850963 C 625 0.00 1285 ambiguous_trans 36 ALIGNMENT 30 Y12-3e17.q1k chr13 717 687 357306 357336 C 31 100.00 1285 ambiguous_trans 30 ALIGNMENT 0 Y12-3e17.q1k chr13 718 860 189781 189780 F 143 0.00 1285 ambiguous_trans 29 ALIGNMENT 355 Y12-3e17.q1k chr01 636 29 160259 160872 C 608 88.49 1285 ambiguous_trans 19 ALIGNMENT 0 Y12-3e17.q1k chr07 62 452 817206 817205 F 391 0.00 1285 ambiguous_trans 42 ALIGNMENT 127 Y12-3e17.q1k chr06 377 641 158408 158669 F 265 85.66 1285 ambiguous_trans_ua 41 ALIGNMENT 0 Y12-3e17.q1k chr15 657 860 600734 600733 F 204 0.00 1285 ambiguous_trans 4 ALIGNMENT 0 Y12-3e17.q1k chr14 686 62 96943 96942 C 625 0.00 1285 ambiguous_trans 32 ALIGNMENT 30 Y12-3e17.q1k chr07 717 687 817700 817730 C 31 100.00 1285 ambiguous_trans 43 ALIGNMENT 30 Y12-3e17.q1k chr10 687 717 483548 483578 F 31 100.00 1285 ambiguous_trans 27 ALIGNMENT 0 Y12-3e17.q1k chr14 860 718 96913 96912 C 143 0.00 1285 ambiguous_trans 32 ALIGNMENT 0 Y12-3e19.p1k chr08 62 1026 365425 365424 F 965 0.00 1438 reject_low 1 ALIGNMENT 1000 Y12-3e19.p1k chr02 30 1156 271537 272684 F 1127 97.34 1438 accept 0 ALIGNMENT 21 Y12-3e19.p1k chr08 1027 1071 365425 365470 F 45 86.67 1438 reject_low 1 ALIGNMENT 1004 Y12-3e19.q1k chr02 1174 38 276438 277584 C 1137 96.83 1388 accept 0 ALIGNMENT 856 Y12-3e20.p1k chr11 1159 34 160786 161922 C 1126 93.52 1333 accept 0 ALIGNMENT 981 Y12-3e20.q1k chr11 46 1221 157990 159182 F 1176 95.49 1384 accept 0 ALIGNMENT 228 Y12-3e21.p1k chr03 517 1108 314020 314615 F 592 80.07 1365 reject_low 4 ALIGNMENT 358 Y12-3e21.p1k chr06 1108 392 14694 15413 C 717 83.82 1365 ambiguous_tel 1 ALIGNMENT 938 Y12-3e21.q1k chr14 33 1089 13060 14131 F 1057 96.97 1308 ambiguous_tel 0 ALIGNMENT 944 Y12-3e21.q1k chr06 33 1089 11156 12227 F 1057 97.16 1308 ambiguous_tel 1 ALIGNMENT 0 Y12-3e21.p1k chr04 396 62 18682 18681 C 335 0.00 1365 reject_low 3 ALIGNMENT 360 Y12-3e21.p1k chr04 1108 397 17966 18681 C 712 83.99 1365 reject_low 3 ALIGNMENT 364 Y12-3e21.p1k chr14 1139 397 16477 17225 C 743 83.58 1365 ambiguous_tel 0 ALIGNMENT 0 Y12-3e21.p1k chr06 391 62 15414 15413 C 330 0.00 1365 ambiguous_tel 1 ALIGNMENT 0 Y12-3e21.p1k chr03 62 516 314020 314019 F 455 0.00 1365 reject_low 4 ALIGNMENT 995 Y12-3e21.p1k chr10 20 1153 726699 727843 F 1134 96.47 1365 reject_low 2 ALIGNMENT 0 Y12-3e21.p1k chr14 396 62 17226 17225 C 335 0.00 1365 ambiguous_tel 0 ALIGNMENT 862 Y12-3e22.p1k chr04 67 1148 1030732 1031814 F 1082 94.27 1285 accept_chi 1 ALIGNMENT 979 Y12-3e22.q1k chr10 42 1159 286526 287651 F 1118 96.60 1369 accept_chi 0 ALIGNMENT 963 Y12-3f02.q1k chr10 1111 36 15455 16542 C 1076 97.30 1341 accept_tel 0 ALIGNMENT 0 Y12-3f02.p1k chr04 560 783 226864 226863 F 224 0.00 1367 reject_low 3 ALIGNMENT 960 Y12-3f02.q1k chr09 1111 36 15472 16559 C 1076 97.21 1341 reject_low 1 ALIGNMENT 388 Y12-3f02.q1k chr14 440 1111 750336 751019 F 672 86.61 1341 reject_low 2 ALIGNMENT 0 Y12-3f02.p1k chr04 287 506 226812 226811 F 220 0.00 1367 reject_low 3 ALIGNMENT 615 Y12-3f02.p1k chr10 265 1204 11105 12021 F 940 90.11 1367 accept_tel 0 ALIGNMENT 0 Y12-3f02.q1k chr14 62 439 750336 750335 F 378 0.00 1341 reject_low 2 ALIGNMENT 611 Y12-3f02.p1k chr09 265 1104 11122 11937 F 840 92.38 1367 reject_low 1 ALIGNMENT 20 Y12-3f02.p1k chr04 507 559 226812 226864 F 53 96.23 1367 reject_low 3 ALIGNMENT 732 Y12-3f03.p1k chr02 1244 278 423906 424875 C 967 93.17 1420 accept 0 ALIGNMENT 1006 Y12-3f03.q1k chr02 34 1239 419340 420559 F 1206 95.52 1405 accept 0 ALIGNMENT 888 Y12-3f05.q1k chr16 38 1148 928512 929636 F 1111 94.96 1370 accept 0 ALIGNMENT 705 Y12-3f05.p1k chr04 1113 289 1501539 1502375 C 825 96.36 1371 ambiguous_tel 1 ALIGNMENT 918 Y12-3f07.q1k chr07 1086 39 395253 396314 C 1048 97.33 1354 accept 0 ALIGNMENT 973 Y12-3f07.p1k chr07 26 1174 391505 392668 F 1149 95.74 1375 accept 0 ALIGNMENT 945 Y12-3f08.q1k chr15 1079 33 356171 357230 C 1047 97.71 1374 accept 0 ALIGNMENT 871 Y12-3f08.p1k chr15 21 1016 353092 354103 F 996 97.19 1293 accept 0 ALIGNMENT 868 Y12-3f09.p1k chr14 19 1152 476442 477567 F 1134 93.74 1367 accept 0 ALIGNMENT 912 Y12-3f09.q1k chr14 1122 31 476534 477627 C 1092 95.79 1386 accept 0 ALIGNMENT 678 Y12-3f10.p1k chr10 24 1049 266912 267952 F 1026 90.55 1316 accept 0 ALIGNMENT 955 Y12-3f11.p1k chr16 1140 17 585905 587040 C 1124 95.82 1366 accept 0 ALIGNMENT 925 Y12-3f11.q1k chr16 35 1102 582371 583448 F 1068 96.25 1340 accept 0 ALIGNMENT 895 Y12-3f12.q1k chr13 34 1044 633383 634403 F 1011 96.83 1336 accept 0 ALIGNMENT 951 Y12-3f12.p1k chr13 1157 24 635234 636385 C 1134 96.03 1366 accept 0 ALIGNMENT 674 Y12-3f12.q1k chr16 1025 37 96586 97581 C 989 89.79 1336 reject_low 1 ALIGNMENT 890 Y12-3f13.p1k chr16 24 1024 388241 389260 F 1001 97.20 1287 accept 0 ALIGNMENT 961 Y12-3f13.q1k chr16 1144 37 390138 391262 C 1108 96.93 1371 accept 0 ALIGNMENT 909 Y12-3f14.p1k chr07 1070 26 663007 664067 C 1045 97.32 1299 accept 0 ALIGNMENT 832 Y12-3f14.q1k chr07 40 1084 660294 661345 F 1045 94.64 1315 accept 0 ALIGNMENT 1025 Y12-3f16.q1k chr04 1206 40 471276 472457 C 1167 96.66 1421 accept 0 ALIGNMENT 603 Y12-3f16.q1k chr02 648 40 300165 300773 C 609 99.67 1421 reject_low 1 ALIGNMENT 0 Y12-3f16.p1k chr14 807 834 767404 767403 F 28 0.00 1364 reject_low 2 ALIGNMENT 1020 Y12-3f16.p1k chr04 27 1173 467552 468708 F 1147 97.30 1364 accept 0 ALIGNMENT 0 Y12-3f16.q1k chr02 893 649 300166 300165 C 245 0.00 1421 reject_low 1 ALIGNMENT 127 Y12-3f16.p1k chr14 41 806 766638 767404 F 766 73.11 1364 reject_low 2 ALIGNMENT 984 Y12-3f17.p1k chr12 1134 23 707115 708228 C 1112 97.21 1350 accept 0 ALIGNMENT 1030 Y12-3f17.q1k chr12 39 1185 704163 705322 F 1147 97.21 1400 accept 0 ALIGNMENT 1011 Y12-3f18.q1k chr07 37 1197 675404 676570 F 1161 96.47 1398 accept 0 ALIGNMENT 757 Y12-3f18.p1k chr07 1308 352 678847 679799 C 957 94.15 1455 accept 0 ALIGNMENT 953 Y12-3f19.p1k chr16 1182 20 167634 168815 C 1163 95.18 1355 accept 0 ALIGNMENT 915 Y12-3f19.q1k chr16 37 1174 164866 166013 F 1138 94.82 1395 accept 0 ALIGNMENT 942 Y12-3f20.q1k chr04 1147 39 1237582 1238698 C 1109 95.94 1372 accept 0 ALIGNMENT 946 Y12-3f20.p1k chr04 22 1123 1234704 1235815 F 1102 96.10 1320 accept 0 ALIGNMENT 987 Y12-3f21.q1k chr07 37 1242 746605 747826 F 1206 95.11 1357 accept 0 ALIGNMENT 924 Y12-3f21.p1k chr07 1060 28 750950 751992 C 1033 97.39 1302 accept 0 ALIGNMENT 320 Y12-3f22.q1k chr05 459 75 397266 397650 C 385 94.55 1343 reject_low 1 ALIGNMENT 984 Y12-3f22.q1k chr02 36 1217 59778 60961 F 1182 95.77 1343 accept 0 ALIGNMENT 0 Y12-3f22.q1k chr05 862 460 397267 397266 C 403 0.00 1343 reject_low 1 ALIGNMENT 699 Y12-3f22.p1k chr02 1244 273 62891 63874 C 972 92.49 1299 accept 0 ALIGNMENT 986 Y12-3f23.p1k chr04 18 1166 1382467 1383617 F 1149 96.17 1319 accept 0 ALIGNMENT 939 Y12-3f23.q1k chr04 1159 38 1385352 1386487 C 1122 95.37 1335 accept 0 ALIGNMENT 769 Y12-3g01.p1k chr12 204 1187 25324 26320 F 984 94.00 1426 accept 0 ALIGNMENT 542 Y12-3g03.p1k chr04 1150 261 449210 450083 C 890 90.00 1478 accept_chi 1 ALIGNMENT 831 Y12-3g03.q1k chr09 34 1073 99145 100195 F 1040 94.13 1383 accept_chi 0 ALIGNMENT 199 Y12-3g04.p1k chr10 916 311 480161 480765 C 606 77.89 1339 ambiguous_trans 14 ALIGNMENT 196 Y12-3g04.p1k chr04 311 916 989836 990440 F 606 77.72 1339 ambiguous_trans 21 ALIGNMENT 615 Y12-3g04.p1k chr02 1103 311 31623 32427 C 793 93.32 1339 ambiguous_trans 9 ALIGNMENT 198 Y12-3g04.p1k chr13 909 311 186371 186968 C 599 77.96 1339 ambiguous_trans 16 ALIGNMENT 198 Y12-3g04.p1k chr15 909 311 597022 597619 C 599 77.96 1339 ambiguous_trans 17 ALIGNMENT 196 Y12-3g04.p1k chr01 311 916 163359 163963 F 606 77.72 1339 ambiguous_trans 19 ALIGNMENT 621 Y12-3g04.p1k chr15 1103 311 972264 973068 C 793 93.57 1339 ambiguous_trans 6 ALIGNMENT 630 Y12-3g04.p1k chr06 1103 311 139890 140694 C 793 93.95 1339 ambiguous_trans 2 ALIGNMENT 196 Y12-3g04.p1k chr16 916 311 58651 59255 C 606 77.72 1339 ambiguous_trans 23 ALIGNMENT 626 Y12-3g04.p1k chr07 311 1103 571917 572722 F 793 93.82 1339 ambiguous_trans 4 ALIGNMENT 624 Y12-3g04.p1k chr04 311 1095 516857 517652 F 785 93.89 1339 ambiguous_trans 8 ALIGNMENT 198 Y12-3g04.p1k chr10 909 311 474584 475181 C 599 77.96 1339 ambiguous_trans 15 ALIGNMENT 621 Y12-3g04.p1k chr12 311 1103 978910 979714 F 793 93.69 1339 ambiguous_trans 5 ALIGNMENT 618 Y12-3g04.p1k chr15 311 1095 707237 708032 F 785 93.76 1339 ambiguous_trans 13 ALIGNMENT 196 Y12-3g04.p1k chr04 311 916 881415 882019 F 606 77.72 1339 ambiguous_trans 20 ALIGNMENT 622 Y12-3g04.p1k chr12 1093 311 943182 943975 C 783 93.87 1339 ambiguous_trans 10 ALIGNMENT 618 Y12-3g04.p1k chr04 1103 311 873798 874602 C 793 93.44 1339 ambiguous_trans 7 ALIGNMENT 620 Y12-3g04.p1k chr03 1094 311 86802 87596 C 784 93.75 1339 ambiguous_trans 11 ALIGNMENT 630 Y12-3g04.p1k chr07 1103 311 813434 814238 C 793 93.95 1339 ambiguous_trans 3 ALIGNMENT 197 Y12-3g04.p1k chr13 916 335 198531 199111 C 582 78.69 1339 ambiguous_trans 18 ALIGNMENT 1070 Y12-3g04.q1k chr09 1278 34 326597 327853 C 1245 96.63 1407 accept 0 ALIGNMENT 620 Y12-3g04.p1k chr14 311 1094 565206 566000 F 784 93.75 1339 ambiguous_trans 12 ALIGNMENT 196 Y12-3g04.p1k chr07 311 916 564964 565568 F 606 77.72 1339 ambiguous_trans 22 ALIGNMENT 615 Y12-3g04.p1k chr04 1117 311 983131 983951 C 807 92.94 1339 ambiguous_trans 1 ALIGNMENT 227 Y12-3g05.q1k chr13 36 282 184235 184481 F 247 99.19 1384 reject_low 18 ALIGNMENT 0 Y12-3g05.q1k chr01 914 305 160238 160237 C 610 0.00 1384 reject_low 20 ALIGNMENT 0 Y12-3g05.q1k chr08 914 283 543631 543630 C 632 0.00 1384 reject_low 17 ALIGNMENT 106 Y12-3g05.q1k chr03 152 290 151698 151836 F 139 94.24 1384 reject_bad_break 0 ALIGNMENT 0 Y12-3g05.q1k chr14 914 303 96611 96610 C 612 0.00 1384 reject_low 6 ALIGNMENT 57 Y12-3g05.q1k chr07 168 279 817278 817387 F 112 86.61 1384 reject_low 22 ALIGNMENT 227 Y12-3g05.q1k chr02 36 282 259641 259887 F 247 99.19 1384 reject_low 16 ALIGNMENT 252 Y12-3g05.q1k chr07 36 302 535280 535546 F 267 99.63 1384 reject_low 5 ALIGNMENT 230 Y12-3g05.q1k chr15 36 282 594886 595132 F 247 99.60 1384 reject_low 14 ALIGNMENT 230 Y12-3g05.q1k chr15 36 282 600468 600714 F 247 99.60 1384 reject_low 15 ALIGNMENT 0 Y12-3g05.q1k chr07 303 914 535546 535545 F 612 0.00 1384 reject_low 5 ALIGNMENT 187 Y12-3g05.q1k chr01 304 36 160237 160510 C 269 91.82 1384 reject_low 20 ALIGNMENT 237 Y12-3g05.q1k chr07 36 302 931756 932022 F 267 97.75 1384 reject_low 10 ALIGNMENT 240 Y12-3g05.q1k chr16 36 302 560543 560809 F 267 98.13 1384 reject_low 9 ALIGNMENT 0 Y12-3g05.q1k chr07 62 167 817278 817277 F 106 0.00 1384 reject_low 22 ALIGNMENT 0 Y12-3g05.q1k chr07 280 914 817387 817386 F 635 0.00 1384 reject_low 22 ALIGNMENT 0 Y12-3g05.q1k chr02 304 914 226956 226955 F 611 0.00 1384 reject_low 1 ALIGNMENT 661 Y12-3g05.p1k chr03 1091 201 155379 156282 C 891 93.71 1460 reject_bad_break 0 ALIGNMENT 0 Y12-3g05.q1k chr02 303 914 221373 221372 F 612 0.00 1384 reject_low 8 ALIGNMENT 719 Y12-3g05.q1k chr03 303 1188 151896 152802 F 886 96.05 1384 reject_bad_break 0 ALIGNMENT 0 Y12-3g05.q1k chr02 283 914 259887 259886 F 632 0.00 1384 reject_low 16 ALIGNMENT 227 Y12-3g05.q1k chr13 36 282 189817 190063 F 247 99.19 1384 reject_low 19 ALIGNMENT 256 Y12-3g05.q1k chr02 36 303 226689 226956 F 268 100.00 1384 reject_low 1 ALIGNMENT 246 Y12-3g05.q1k chr14 302 36 102192 102458 C 267 98.88 1384 reject_low 7 ALIGNMENT 0 Y12-3g05.q1k chr15 283 914 595132 595131 F 632 0.00 1384 reject_low 14 ALIGNMENT 227 Y12-3g05.q1k chr08 282 36 543630 543876 C 247 99.19 1384 reject_low 17 ALIGNMENT 0 Y12-3g05.q1k chr13 914 303 362587 362586 C 612 0.00 1384 reject_low 4 ALIGNMENT 0 Y12-3g05.q1k chr07 914 283 823001 823000 C 632 0.00 1384 reject_low 13 ALIGNMENT 0 Y12-3g05.q1k chr14 914 303 102193 102192 C 612 0.00 1384 reject_low 7 ALIGNMENT 255 Y12-3g05.q1k chr13 302 36 362586 362852 C 267 100.00 1384 reject_low 4 ALIGNMENT 0 Y12-3g05.q1k chr07 303 914 932022 932021 F 612 0.00 1384 reject_low 10 ALIGNMENT 0 Y12-3g05.q1k chr01 914 303 165828 165827 C 612 0.00 1384 reject_low 21 ALIGNMENT 242 Y12-3g05.q1k chr02 36 302 221105 221373 F 267 98.50 1384 reject_low 8 ALIGNMENT 0 Y12-3g05.q1k chr15 283 914 600714 600713 F 632 0.00 1384 reject_low 15 ALIGNMENT 234 Y12-3g05.q1k chr11 302 36 457783 458049 C 267 97.38 1384 reject_low 11 ALIGNMENT 0 Y12-3g05.q1k chr03 291 302 151837 151895 F 12 0.00 1384 reject_bad_break 0 ALIGNMENT 0 Y12-3g05.q1k chr15 219 914 594759 594758 F 696 0.00 1384 reject_low 23 ALIGNMENT 0 Y12-3g05.q1k chr13 283 914 184481 184480 F 632 0.00 1384 reject_low 18 ALIGNMENT 0 Y12-3g05.q1k chr11 914 303 517096 517095 C 612 0.00 1384 reject_low 2 ALIGNMENT 230 Y12-3g05.q1k chr07 282 36 823000 823246 C 247 99.60 1384 reject_low 13 ALIGNMENT 246 Y12-3g05.q1k chr14 302 36 96610 96876 C 267 98.88 1384 reject_low 6 ALIGNMENT 47 Y12-3g05.q1k chr15 149 218 594690 594759 F 70 91.43 1384 reject_low 23 ALIGNMENT 0 Y12-3g05.q1k chr03 62 151 151698 151697 F 90 0.00 1384 reject_bad_break 0 ALIGNMENT 0 Y12-3g05.q1k chr15 62 148 594690 594689 F 87 0.00 1384 reject_low 23 ALIGNMENT 0 Y12-3g05.q1k chr13 283 914 190063 190062 F 632 0.00 1384 reject_low 19 ALIGNMENT 255 Y12-3g05.q1k chr13 302 36 357004 357270 C 267 100.00 1384 reject_low 3 ALIGNMENT 230 Y12-3g05.q1k chr07 282 36 817418 817664 C 247 99.60 1384 reject_low 12 ALIGNMENT 0 Y12-3g05.q1k chr16 303 914 560809 560808 F 612 0.00 1384 reject_low 9 ALIGNMENT 185 Y12-3g05.q1k chr01 302 36 165827 166098 C 267 91.76 1384 reject_low 21 ALIGNMENT 255 Y12-3g05.q1k chr11 302 36 517095 517361 C 267 100.00 1384 reject_low 2 ALIGNMENT 0 Y12-3g05.q1k chr11 914 303 457784 457783 C 612 0.00 1384 reject_low 11 ALIGNMENT 0 Y12-3g05.q1k chr07 914 283 817419 817418 C 632 0.00 1384 reject_low 12 ALIGNMENT 0 Y12-3g05.q1k chr13 914 303 357005 357004 C 612 0.00 1384 reject_low 3 ALIGNMENT 884 Y12-3g06.q1k chr05 1062 38 71267 72307 C 1025 96.98 1325 accept 0 ALIGNMENT 1047 Y12-3g06.p1k chr05 27 1277 67194 68451 F 1251 95.20 1406 accept 0 ALIGNMENT 0 Y12-3g07.q1k chr13 855 609 352277 352276 C 247 0.00 1417 reject_low 5 ALIGNMENT 0 Y12-3g07.q1k chr13 62 722 372711 372710 F 661 0.00 1417 reject_low 13 ALIGNMENT 0 Y12-3g07.q1k chr14 714 62 519491 519490 C 653 0.00 1417 reject_low 17 ALIGNMENT 96 Y12-3g07.q1k chr06 513 614 157909 158009 F 102 99.02 1417 reject_low 2 ALIGNMENT 0 Y12-3g07.q1k chr14 513 62 374962 374961 C 452 0.00 1417 reject_low 9 ALIGNMENT 0 Y12-3g07.q1k chr15 722 62 118025 118024 C 661 0.00 1417 reject_low 15 ALIGNMENT 0 Y12-3g07.q1k chr07 615 855 440820 440819 F 241 0.00 1417 reject_low 4 ALIGNMENT 105 Y12-3g07.q1k chr08 509 617 237845 237953 F 109 99.08 1417 reject_low 1 ALIGNMENT 0 Y12-3g07.q1k chr13 62 722 378299 378298 F 661 0.00 1417 reject_low 14 ALIGNMENT 0 Y12-3g07.q1k chr08 62 508 237845 237844 F 447 0.00 1417 reject_low 1 ALIGNMENT 0 Y12-3g07.q1k chr13 703 62 837768 837767 C 642 0.00 1417 reject_low 10 ALIGNMENT 0 Y12-3g07.q1k chr04 62 504 1095356 1095355 F 443 0.00 1417 reject_low 7 ALIGNMENT 36 Y12-3g07.q1k chr05 844 736 312310 312418 C 109 79.82 1417 reject_low 22 ALIGNMENT 0 Y12-3g07.q1k chr16 62 512 560194 560193 F 451 0.00 1417 reject_low 6 ALIGNMENT 49 Y12-3g07.q1k chr13 723 850 378299 378427 F 128 82.81 1417 reject_low 14 ALIGNMENT 95 Y12-3g07.q1k chr16 505 605 622528 622628 F 101 98.02 1417 reject_low 3 ALIGNMENT 49 Y12-3g07.q1k chr15 850 723 117896 118024 C 128 82.81 1417 reject_low 15 ALIGNMENT 0 Y12-3g07.q1k chr04 62 728 434441 434440 F 667 0.00 1417 reject_low 11 ALIGNMENT 0 Y12-3g07.q1k chr16 606 855 622628 622627 F 250 0.00 1417 reject_low 3 ALIGNMENT 0 Y12-3g07.q1k chr02 855 610 36392 36391 C 246 0.00 1417 reject_low 8 ALIGNMENT 49 Y12-3g07.q1k chr13 723 850 372711 372839 F 128 82.81 1417 reject_low 13 ALIGNMENT 0 Y12-3g07.q1k chr16 714 62 56782 56781 C 653 0.00 1417 reject_low 12 ALIGNMENT 0 Y12-3g07.q1k chr11 728 62 163154 163153 C 667 0.00 1417 reject_low 20 ALIGNMENT 0 Y12-3g07.q1k chr13 740 62 202222 202221 C 679 0.00 1417 reject_low 21 ALIGNMENT 41 Y12-3g07.q1k chr13 850 741 202112 202221 C 110 81.82 1417 reject_low 21 ALIGNMENT 83 Y12-3g07.q1k chr04 505 606 1095356 1095457 F 102 94.12 1417 reject_low 7 ALIGNMENT 0 Y12-3g07.q1k chr13 504 62 352380 352379 C 443 0.00 1417 reject_low 5 ALIGNMENT 0 Y12-3g07.q1k chr04 607 855 1095457 1095456 F 249 0.00 1417 reject_low 7 ALIGNMENT 0 Y12-3g07.q1k chr06 615 855 158009 158008 F 241 0.00 1417 reject_low 2 ALIGNMENT 946 Y12-3g07.p1k chr08 1092 23 362616 363697 C 1070 97.29 1448 accept 0 ALIGNMENT 0 Y12-3g07.q1k chr04 714 62 1207021 1207020 C 653 0.00 1417 reject_low 19 ALIGNMENT 0 Y12-3g07.q1k chr02 512 62 36487 36486 C 451 0.00 1417 reject_low 8 ALIGNMENT 53 Y12-3g07.q1k chr13 846 704 837625 837767 C 143 83.92 1417 reject_low 10 ALIGNMENT 94 Y12-3g07.q1k chr16 513 606 560194 560287 F 94 100.00 1417 reject_low 6 ALIGNMENT 0 Y12-3g07.q1k chr16 62 504 622528 622527 F 443 0.00 1417 reject_low 3 ALIGNMENT 0 Y12-3g07.q1k chr13 62 728 362607 362606 F 667 0.00 1417 reject_low 18 ALIGNMENT 88 Y12-3g07.q1k chr13 608 505 352276 352379 C 104 96.15 1417 reject_low 5 ALIGNMENT 0 Y12-3g07.q1k chr06 62 512 157909 157908 F 451 0.00 1417 reject_low 2 ALIGNMENT 40 Y12-3g07.q1k chr11 852 729 163028 163153 C 124 80.65 1417 reject_low 20 ALIGNMENT 932 Y12-3g07.q1k chr08 40 1139 358006 359118 F 1100 96.45 1417 accept 0 ALIGNMENT 50 Y12-3g07.q1k chr04 729 854 434441 434566 F 126 83.33 1417 reject_low 11 ALIGNMENT 94 Y12-3g07.q1k chr07 512 614 440719 440820 F 103 98.06 1417 reject_low 4 ALIGNMENT 89 Y12-3g07.q1k chr02 609 513 36391 36486 C 97 97.94 1417 reject_low 8 ALIGNMENT 0 Y12-3g07.q1k chr14 855 609 374869 374868 C 247 0.00 1417 reject_low 9 ALIGNMENT 49 Y12-3g07.q1k chr16 850 715 56645 56781 C 136 81.62 1417 reject_low 12 ALIGNMENT 0 Y12-3g07.q1k chr16 722 62 844731 844730 C 661 0.00 1417 reject_low 16 ALIGNMENT 0 Y12-3g07.q1k chr07 62 511 440719 440718 F 450 0.00 1417 reject_low 4 ALIGNMENT 0 Y12-3g07.q1k chr16 607 855 560287 560286 F 249 0.00 1417 reject_low 6 ALIGNMENT 39 Y12-3g07.q1k chr04 845 715 1206889 1207020 C 131 79.39 1417 reject_low 19 ALIGNMENT 49 Y12-3g07.q1k chr16 850 723 844602 844730 C 128 82.81 1417 reject_low 16 ALIGNMENT 0 Y12-3g07.q1k chr08 618 855 237953 237952 F 238 0.00 1417 reject_low 1 ALIGNMENT 81 Y12-3g07.q1k chr14 608 514 374868 374961 C 95 95.79 1417 reject_low 9 ALIGNMENT 42 Y12-3g07.q1k chr14 845 715 519359 519490 C 131 80.15 1417 reject_low 17 ALIGNMENT 0 Y12-3g07.q1k chr05 735 62 312419 312418 C 674 0.00 1417 reject_low 22 ALIGNMENT 45 Y12-3g07.q1k chr13 729 850 362607 362729 F 122 81.97 1417 reject_low 18 ALIGNMENT 950 Y12-3g08.q1k chr03 1140 36 132976 134098 C 1105 96.11 1388 accept 0 ALIGNMENT 903 Y12-3g08.p1k chr03 20 1143 128702 129829 F 1124 94.75 1400 accept 0 ALIGNMENT 65 Y12-3g09.p1k chr02 131 18 808950 809065 C 114 88.60 1433 reject_low 15 ALIGNMENT 467 Y12-3g09.p1k chr14 690 22 781256 781927 C 669 91.18 1433 reject_low 7 ALIGNMENT 254 Y12-3g09.p1k chr08 35 503 12297 12763 F 469 86.35 1433 reject_low 17 ALIGNMENT 0 Y12-3g09.p1k chr16 497 829 8773 8772 F 333 0.00 1433 reject_low 12 ALIGNMENT 415 Y12-3g09.p1k chr01 18 665 2155 2800 F 648 89.66 1433 reject_low 9 ALIGNMENT 0 Y12-3g09.p1k chr12 573 829 14003 14002 F 257 0.00 1433 reject_low 14 ALIGNMENT 185 Y12-3g09.p1k chr13 496 22 922175 922648 C 475 81.89 1433 reject_low 13 ALIGNMENT 918 Y12-3g09.q1k chr07 1120 37 9571 10661 C 1084 96.13 1388 accept 0 ALIGNMENT 518 Y12-3g09.p1k chr03 711 22 307116 307806 C 690 92.90 1433 reject_low 4 ALIGNMENT 0 Y12-3g09.p1k chr03 829 712 307117 307116 C 118 0.00 1433 reject_low 4 ALIGNMENT 0 Y12-3g09.p1k chr09 712 829 9833 9832 F 118 0.00 1433 reject_low 5 ALIGNMENT 0 Y12-3g09.q1k chr15 385 849 1071032 1071031 F 465 0.00 1388 reject_low 2 ALIGNMENT 453 Y12-3g09.p1k chr12 711 22 1062243 1062925 C 690 90.29 1433 reject_low 8 ALIGNMENT 336 Y12-3g09.p1k chr02 18 508 7954 8448 F 491 90.63 1433 reject_low 10 ALIGNMENT 0 Y12-3g09.p1k chr07 829 132 1080212 1080211 C 698 0.00 1433 reject_low 16 ALIGNMENT 0 Y12-3g09.p1k chr12 513 547 13930 13978 F 35 0.00 1433 reject_low 14 ALIGNMENT 0 Y12-3g09.p1k chr02 829 132 808951 808950 C 698 0.00 1433 reject_low 15 ALIGNMENT 375 Y12-3g09.p1k chr12 18 512 13431 13929 F 495 93.13 1433 reject_low 14 ALIGNMENT 0 Y12-3g09.p1k chr12 829 712 1062244 1062243 C 118 0.00 1433 reject_low 8 ALIGNMENT 0 Y12-3g09.p1k chr13 829 497 922176 922175 C 333 0.00 1433 reject_low 13 ALIGNMENT 283 Y12-3g09.q1k chr15 37 384 1070685 1071032 F 348 94.83 1388 reject_low 2 ALIGNMENT 20 Y12-3g09.p1k chr12 548 572 13979 14003 F 25 96.00 1433 reject_low 14 ALIGNMENT 24 Y12-3g09.p1k chr08 611 651 12887 12928 F 41 87.80 1433 reject_low 17 ALIGNMENT 845 Y12-3g09.p1k chr09 1151 22 432797 433934 C 1130 92.92 1433 reject_low 1 ALIGNMENT 502 Y12-3g09.p1k chr10 18 711 9124 9816 F 694 92.22 1433 reject_low 6 ALIGNMENT 200 Y12-3g09.p1k chr15 496 22 1082368 1082843 C 475 82.95 1433 reject_low 2 ALIGNMENT 0 Y12-3g09.p1k chr11 724 829 2869 2868 F 106 0.00 1433 reject_low 3 ALIGNMENT 812 Y12-3g09.p1k chr07 22 1151 6643 7779 F 1130 91.86 1433 accept 0 ALIGNMENT 0 Y12-3g09.p1k chr02 509 829 8448 8447 F 321 0.00 1433 reject_low 10 ALIGNMENT 0 Y12-3g09.p1k chr08 504 610 12764 12886 F 107 0.00 1433 reject_low 17 ALIGNMENT 199 Y12-3g09.p1k chr16 18 496 8293 8773 F 479 82.46 1433 reject_low 12 ALIGNMENT 0 Y12-3g09.p1k chr08 652 829 12928 12927 F 178 0.00 1433 reject_low 17 ALIGNMENT 0 Y12-3g09.p1k chr01 666 829 2800 2799 F 164 0.00 1433 reject_low 9 ALIGNMENT 0 Y12-3g09.p1k chr14 829 691 781257 781256 C 139 0.00 1433 reject_low 7 ALIGNMENT 523 Y12-3g09.p1k chr11 18 723 2168 2869 F 706 92.92 1433 reject_low 3 ALIGNMENT 0 Y12-3g09.p1k chr10 712 829 9816 9815 F 118 0.00 1433 reject_low 6 ALIGNMENT 0 Y12-3g09.p1k chr15 829 497 1082369 1082368 C 333 0.00 1433 reject_low 2 ALIGNMENT 251 Y12-3g09.p1k chr15 18 708 11896 12585 F 691 81.04 1433 reject_low 11 ALIGNMENT 0 Y12-3g09.p1k chr15 709 829 12585 12584 F 121 0.00 1433 reject_low 11 ALIGNMENT 65 Y12-3g09.p1k chr07 131 18 1080211 1080326 C 114 88.60 1433 reject_low 16 ALIGNMENT 502 Y12-3g09.p1k chr09 18 711 9141 9833 F 694 92.22 1433 reject_low 5 ALIGNMENT 0 Y12-3g10.p1k chr12 90 866 673335 673334 F 777 0.00 1341 reject_low 2 ALIGNMENT 50 Y12-3g10.p1k chr12 26 89 673271 673335 F 64 93.75 1341 reject_low 2 ALIGNMENT 1020 Y12-3g10.q1k chr07 1189 38 70464 71628 C 1152 97.14 1413 accept_chi 0 ALIGNMENT 920 Y12-3g10.p1k chr15 1158 17 647716 648880 C 1142 95.10 1341 accept_chi 1 ALIGNMENT 27 Y12-3g12.p1k chr08 1230 1145 175281 175371 C 86 79.07 1386 accept 0 ALIGNMENT 981 Y12-3g12.p1k chr08 1032 18 175438 176452 C 1015 98.92 1386 accept 0 ALIGNMENT 983 Y12-3g12.q1k chr08 35 1129 171181 172286 F 1095 97.90 1383 accept 0 ALIGNMENT 0 Y12-3g12.p1k chr08 1144 1033 175372 175437 C 112 0.00 1386 accept 0 ALIGNMENT 1007 Y12-3g14.p1k chr07 19 1219 57169 58377 F 1201 94.84 1380 accept 0 ALIGNMENT 930 Y12-3g14.q1k chr07 1151 43 60019 61136 C 1109 96.48 1342 accept 0 ALIGNMENT 876 Y12-3g15.q1k chr10 29 1094 650893 651973 F 1066 94.65 1336 accept 0 ALIGNMENT 912 Y12-3g15.p1k chr10 1097 24 654034 655120 C 1074 96.37 1399 accept 0 ALIGNMENT 22 Y12-3g16.q1k chr16 618 654 462793 462829 F 37 94.59 1360 reject_low 7 ALIGNMENT 0 Y12-3g16.q1k chr16 827 737 792984 792983 C 91 0.00 1360 reject_low 4 ALIGNMENT 866 Y12-3g16.q1k chr15 1125 40 235793 236901 C 1086 94.66 1360 accept 0 ALIGNMENT 30 Y12-3g16.q1k chr15 715 601 236279 236398 C 115 80.87 1360 reject_low 2 ALIGNMENT 21 Y12-3g16.q1k chr15 655 558 236201 236304 C 98 82.65 1360 reject_low 6 ALIGNMENT 0 Y12-3g16.q1k chr14 704 827 344027 344026 F 124 0.00 1360 reject_low 5 ALIGNMENT 0 Y12-3g16.q1k chr02 656 827 464288 464287 F 172 0.00 1360 reject_low 3 ALIGNMENT 0 Y12-3g16.q1k chr16 695 62 793024 793023 C 634 0.00 1360 reject_low 4 ALIGNMENT 1036 Y12-3g16.p1k chr15 21 1256 231534 232773 F 1236 95.71 1373 accept 0 ALIGNMENT 0 Y12-3g16.q1k chr14 62 671 343996 343995 F 610 0.00 1360 reject_low 5 ALIGNMENT 21 Y12-3g16.q1k chr16 736 696 792983 793023 C 41 85.37 1360 reject_low 4 ALIGNMENT 0 Y12-3g16.q1k chr15 827 716 236280 236279 C 112 0.00 1360 reject_low 2 ALIGNMENT 23 Y12-3g16.q1k chr14 672 703 343996 344027 F 32 93.75 1360 reject_low 5 ALIGNMENT 0 Y12-3g16.q1k chr16 62 617 462793 462792 F 556 0.00 1360 reject_low 7 ALIGNMENT 0 Y12-3g16.q1k chr02 62 510 464066 464065 F 449 0.00 1360 reject_low 1 ALIGNMENT 0 Y12-3g16.q1k chr15 600 62 236399 236398 C 539 0.00 1360 reject_low 2 ALIGNMENT 0 Y12-3g16.q1k chr02 735 827 464289 464288 F 93 0.00 1360 reject_low 1 ALIGNMENT 0 Y12-3g16.q1k chr02 62 557 464191 464190 F 496 0.00 1360 reject_low 3 ALIGNMENT 0 Y12-3g16.q1k chr16 655 827 462829 462828 F 173 0.00 1360 reject_low 7 ALIGNMENT 31 Y12-3g16.q1k chr02 558 655 464191 464288 F 98 84.69 1360 reject_low 3 ALIGNMENT 0 Y12-3g16.q1k chr15 557 62 236305 236304 C 496 0.00 1360 reject_low 6 ALIGNMENT 0 Y12-3g16.q1k chr15 827 656 236202 236201 C 172 0.00 1360 reject_low 6 ALIGNMENT 68 Y12-3g16.q1k chr02 511 734 464066 464289 F 224 81.25 1360 reject_low 1 ALIGNMENT 0 Y12-3g17.q1k chr13 175 879 352379 352378 F 705 0.00 1340 reject_low 5 ALIGNMENT 0 Y12-3g17.q1k chr04 879 175 1095357 1095356 C 705 0.00 1340 reject_low 7 ALIGNMENT 81 Y12-3g17.q1k chr14 71 165 374868 374961 F 95 95.79 1340 reject_low 9 ALIGNMENT 96 Y12-3g17.q1k chr06 166 65 157909 158009 C 102 99.02 1340 reject_low 2 ALIGNMENT 0 Y12-3g17.q1k chr02 167 879 36486 36485 F 713 0.00 1340 reject_low 8 ALIGNMENT 0 Y12-3g17.q1k chr14 166 879 374961 374960 F 714 0.00 1340 reject_low 9 ALIGNMENT 89 Y12-3g17.q1k chr02 70 166 36391 36486 F 97 97.94 1340 reject_low 8 ALIGNMENT 94 Y12-3g17.q1k chr07 167 65 440719 440820 C 103 98.06 1340 reject_low 4 ALIGNMENT 0 Y12-3g17.q1k chr07 879 168 440720 440719 C 712 0.00 1340 reject_low 4 ALIGNMENT 1029 Y12-3g17.p1k chr08 16 1255 354458 355707 F 1240 95.32 1466 accept 0 ALIGNMENT 0 Y12-3g17.q1k chr06 879 167 157910 157909 C 713 0.00 1340 reject_low 2 ALIGNMENT 94 Y12-3g17.q1k chr16 166 73 560194 560287 C 94 100.00 1340 reject_low 6 ALIGNMENT 0 Y12-3g17.q1k chr08 879 171 237846 237845 C 709 0.00 1340 reject_low 1 ALIGNMENT 0 Y12-3g17.q1k chr16 879 175 622529 622528 C 705 0.00 1340 reject_low 3 ALIGNMENT 105 Y12-3g17.q1k chr08 170 62 237845 237953 C 109 99.08 1340 reject_low 1 ALIGNMENT 83 Y12-3g17.q1k chr04 174 73 1095356 1095457 C 102 94.12 1340 reject_low 7 ALIGNMENT 88 Y12-3g17.q1k chr13 71 174 352276 352379 F 104 96.15 1340 reject_low 5 ALIGNMENT 95 Y12-3g17.q1k chr16 174 74 622528 622628 C 101 98.02 1340 reject_low 3 ALIGNMENT 951 Y12-3g17.q1k chr08 1126 36 357505 358610 C 1091 97.07 1340 accept 0 ALIGNMENT 0 Y12-3g17.q1k chr16 879 167 560195 560194 C 713 0.00 1340 reject_low 6 ALIGNMENT 1008 Y12-3g18.q1k chr10 32 1209 79741 80925 F 1178 96.18 1405 accept 0 ALIGNMENT 1049 Y12-3g18.p1k chr10 1221 19 83593 84795 C 1203 96.67 1388 accept 0 ALIGNMENT 1007 Y12-3g21.q1k chr12 43 1210 1035758 1036936 F 1168 95.55 1373 accept_chi 0 ALIGNMENT 970 Y12-3g21.p1k chr12 19 1178 208820 209995 F 1160 96.38 1399 accept_chi 1 ALIGNMENT 820 Y12-3g22.q1k chr13 37 1162 831548 832683 F 1126 91.83 1339 accept 0 ALIGNMENT 466 Y12-3g22.p1k chr13 979 18 835082 836038 C 962 83.58 1377 accept 0 ALIGNMENT 547 Y12-3h01.p1k chr02 972 277 225816 226501 C 696 95.40 1389 ambiguous_trans 0 ALIGNMENT 373 Y12-3h01.p1k chr04 966 277 1100547 1101227 C 690 87.10 1389 reject_low 13 ALIGNMENT 547 Y12-3h01.p1k chr13 277 972 357458 358143 F 696 95.40 1389 ambiguous_trans 1 ALIGNMENT 271 Y12-3h01.p1k chr16 277 966 805097 805777 F 690 82.17 1389 reject_low 22 ALIGNMENT 528 Y12-3h01.p1k chr15 920 277 599640 600280 C 644 95.96 1389 ambiguous_trans 7 ALIGNMENT 528 Y12-3h01.p1k chr07 277 920 817852 818492 F 644 95.96 1389 ambiguous_trans 6 ALIGNMENT 373 Y12-3h01.p1k chr13 966 277 188949 189629 C 690 87.10 1389 reject_low 15 ALIGNMENT 347 Y12-3h01.p1k chr12 285 966 476442 477114 F 682 86.36 1389 reject_low 18 ALIGNMENT 532 Y12-3h01.p1k chr07 972 277 540544 541229 C 696 94.68 1389 ambiguous_trans 2 ALIGNMENT 528 Y12-3h01.p1k chr02 920 277 264398 265038 C 644 95.96 1389 ambiguous_trans 5 ALIGNMENT 347 Y12-3h01.p1k chr15 966 285 122487 123159 C 682 86.36 1389 reject_low 20 ALIGNMENT 526 Y12-3h01.p1k chr14 277 972 97064 97749 F 696 94.40 1389 ambiguous_trans 4 ALIGNMENT 373 Y12-3h01.p1k chr16 966 277 849196 849876 C 690 87.10 1389 reject_low 16 ALIGNMENT 379 Y12-3h01.p1k chr16 277 966 851085 851765 F 690 87.39 1389 reject_low 12 ALIGNMENT 514 Y12-3h01.p1k chr13 277 972 373156 373841 F 696 93.82 1389 ambiguous_trans 10 ALIGNMENT 514 Y12-3h01.p1k chr05 277 972 492951 493636 F 696 93.82 1389 ambiguous_trans 8 ALIGNMENT 311 Y12-3h01.p1k chr10 966 285 477162 477834 C 682 84.60 1389 reject_low 21 ALIGNMENT 363 Y12-3h01.p1k chr04 985 285 985973 986661 C 701 87.02 1389 reject_low 11 ALIGNMENT 373 Y12-3h01.p1k chr08 277 966 544064 544744 F 690 87.10 1389 reject_low 14 ALIGNMENT 526 Y12-3h01.p1k chr10 972 277 482741 483426 C 696 94.40 1389 ambiguous_trans 3 ALIGNMENT 347 Y12-3h01.p1k chr13 966 285 201116 201788 C 682 86.36 1389 reject_low 19 ALIGNMENT 514 Y12-3h01.p1k chr12 277 972 215541 216226 F 696 93.82 1389 ambiguous_trans_ua 9 ALIGNMENT 347 Y12-3h01.p1k chr05 285 966 443860 444532 F 682 86.36 1389 reject_low 17 ALIGNMENT 611 Y12-3h02.p1k chr11 265 1086 341458 342280 F 822 92.46 1322 accept 0 ALIGNMENT 388 Y12-3h04.p1k chr12 896 362 453872 454407 C 535 91.40 1311 reject_low 1 ALIGNMENT 388 Y12-3h04.p1k chr12 896 362 463009 463544 C 535 91.40 1311 accept 0 ALIGNMENT 291 Y12-3h04.q1k chr12 30 524 459876 460389 F 495 88.69 1392 accept 0 ALIGNMENT 645 Y12-3h05.p1k chr13 1079 266 626747 627565 C 814 93.37 1366 accept 0 ALIGNMENT 784 Y12-3h05.q1k chr13 37 998 622682 623645 F 962 95.01 1420 accept 0 ALIGNMENT 625 Y12-3h06.q1k chr08 46 958 92405 93313 F 913 90.14 1333 accept 0 ALIGNMENT 699 Y12-3h06.p1k chr08 1124 266 97681 98532 C 859 94.99 1401 accept 0 ALIGNMENT 961 Y12-3h07.p1k chr05 1154 20 245197 246347 C 1135 96.04 1392 accept 0 ALIGNMENT 954 Y12-3h07.q1k chr05 36 1118 244921 246014 F 1083 97.23 1400 accept 0 ALIGNMENT 1002 Y12-3h08.p1k chr15 17 1158 725031 726175 F 1142 97.99 1400 accept 0 ALIGNMENT 993 Y12-3h08.q1k chr15 1195 43 728339 729491 C 1153 96.79 1441 accept 0 ALIGNMENT 977 Y12-3h09.q1k chr07 1128 33 417469 418577 C 1096 97.81 1363 accept 0 ALIGNMENT 978 Y12-3h09.p1k chr07 21 1133 413758 414888 F 1113 96.59 1371 accept 0 ALIGNMENT 909 Y12-3h10.q1k chr12 1051 37 455843 456877 C 1015 97.24 1363 accept 0 ALIGNMENT 909 Y12-3h10.q1k chr12 1051 37 464980 466014 C 1015 97.24 1363 accept 1 ALIGNMENT 1038 Y12-3h10.p1k chr12 21 1226 462092 463307 F 1206 95.77 1374 accept 1 ALIGNMENT 1038 Y12-3h10.p1k chr12 21 1226 452955 454170 F 1206 95.77 1374 accept 0 ALIGNMENT 940 Y12-3h11.p1k chr14 22 1114 145734 146847 F 1093 96.16 1333 accept 0 ALIGNMENT 934 Y12-3h11.q1k chr14 1076 36 149298 150346 C 1041 97.60 1383 accept 0 ALIGNMENT 0 Y12-3h12.p1k chr02 460 579 736739 736861 F 120 0.00 1301 reject_low 2 ALIGNMENT 73 Y12-3h12.p1k chr02 580 924 736862 737202 F 345 75.07 1301 reject_low 2 ALIGNMENT 918 Y12-3h12.p1k chr12 1058 20 258359 259411 C 1039 96.34 1301 accept_chi 1 ALIGNMENT 0 Y12-3h12.p1k chr02 62 210 736490 736489 F 149 0.00 1301 reject_low 2 ALIGNMENT 27 Y12-3h12.p1k chr02 211 459 736490 736738 F 249 71.89 1301 reject_low 2 ALIGNMENT 980 Y12-3h12.q1k chr15 1132 39 865745 866853 C 1094 97.35 1418 accept_chi 0 ALIGNMENT 161 Y12-3h13.p1k vc_7 466 871 13936 14336 F 406 81.03 1352 reject_vc 0 ALIGNMENT 925 Y12-3h14.q1k chr04 36 1171 773935 775080 F 1136 96.04 1366 accept 0 ALIGNMENT 1020 Y12-3h14.p1k chr04 1308 19 777134 778406 C 1290 94.57 1455 accept 0 ALIGNMENT 901 Y12-3h15.q1k chr15 37 1063 1020763 1021801 F 1027 96.79 1344 accept 0 ALIGNMENT 858 Y12-3h15.p1k chr15 1025 16 1024053 1025076 C 1010 96.73 1291 accept 0 ALIGNMENT 1027 Y12-3h16.p1k chr08 1150 25 36722 37853 C 1126 97.25 1348 accept 0 ALIGNMENT 1010 Y12-3h16.q1k chr08 29 1175 33616 34767 F 1147 96.69 1429 accept 0 ALIGNMENT 981 Y12-3h17.p1k chr15 19 1164 546858 548020 F 1146 96.60 1372 accept 0 ALIGNMENT 961 Y12-3h17.q1k chr15 1138 39 550213 551322 C 1100 96.73 1377 accept 0 ALIGNMENT 942 Y12-3h18.q1k chr12 1119 29 454747 455850 C 1091 96.52 1358 accept 0 ALIGNMENT 1004 Y12-3h18.p1k chr12 20 1124 451670 452790 F 1105 97.74 1349 accept 0 ALIGNMENT 0 Y12-3h18.p1k chr12 62 134 489754 489753 F 73 0.00 1349 reject_low 2 ALIGNMENT 756 Y12-3h18.p1k chr12 135 923 489754 490543 F 789 98.86 1349 reject_low 2 ALIGNMENT 1004 Y12-3h18.p1k chr12 20 1124 460807 461927 F 1105 97.74 1349 accept 1 ALIGNMENT 942 Y12-3h18.q1k chr12 1119 29 463884 464987 C 1091 96.52 1358 accept 1 ALIGNMENT 0 Y12-3h21.q1k chr13 471 888 44406 44405 F 418 0.00 1336 reject_low 12 ALIGNMENT 0 Y12-3h21.q1k chr08 432 62 541282 541281 C 371 0.00 1336 reject_low 16 ALIGNMENT 0 Y12-3h21.q1k chr13 888 473 539498 539497 C 416 0.00 1336 reject_low 9 ALIGNMENT 0 Y12-3h21.q1k chr11 888 468 381303 381302 C 421 0.00 1336 reject_low 15 ALIGNMENT 0 Y12-3h21.q1k chr04 62 432 747492 747491 F 371 0.00 1336 reject_low 7 ALIGNMENT 22 Y12-3h21.q1k chr12 442 470 556338 556366 F 29 100.00 1336 reject_low 14 ALIGNMENT 0 Y12-3h21.q1k chr06 62 438 160559 160558 F 377 0.00 1336 reject_low 10 ALIGNMENT 26 Y12-3h21.q1k chr04 433 471 747492 747530 F 39 97.44 1336 reject_low 7 ALIGNMENT 26 Y12-3h21.q1k chr07 471 433 53133 53171 C 39 97.44 1336 reject_low 8 ALIGNMENT 0 Y12-3h21.q1k chr07 888 472 53134 53133 C 417 0.00 1336 reject_low 8 ALIGNMENT 0 Y12-3h21.q1k chr02 459 888 72394 72393 F 430 0.00 1336 reject_low 4 ALIGNMENT 0 Y12-3h21.q1k chr13 450 62 539519 539518 C 389 0.00 1336 reject_low 9 ALIGNMENT 0 Y12-3h21.q1k chr07 432 62 53172 53171 C 371 0.00 1336 reject_low 8 ALIGNMENT 22 Y12-3h21.q1k chr11 467 439 381302 381330 C 29 100.00 1336 reject_low 15 ALIGNMENT 892 Y12-3h21.q1k chr04 1126 30 922368 923479 C 1097 95.53 1336 accept 0 ALIGNMENT 0 Y12-3h21.q1k chr09 420 62 169507 169506 C 359 0.00 1336 reject_low 3 ALIGNMENT 0 Y12-3h21.q1k chr02 62 411 780338 780337 F 350 0.00 1336 reject_low 1 ALIGNMENT 24 Y12-3h21.q1k chr13 439 470 44375 44406 F 32 100.00 1336 reject_low 12 ALIGNMENT 0 Y12-3h21.q1k chr09 888 472 169457 169456 C 417 0.00 1336 reject_low 3 ALIGNMENT 0 Y12-3h21.q1k chr11 438 62 381331 381330 C 377 0.00 1336 reject_low 15 ALIGNMENT 0 Y12-3h21.q1k chr02 62 414 780395 780394 F 353 0.00 1336 reject_low 2 ALIGNMENT 25 Y12-3h21.q1k chr06 439 471 160559 160591 F 33 100.00 1336 reject_low 10 ALIGNMENT 0 Y12-3h21.q1k chr06 434 62 88017 88016 C 373 0.00 1336 reject_low 13 ALIGNMENT 0 Y12-3h21.q1k chr02 471 888 780396 780395 F 418 0.00 1336 reject_low 1 ALIGNMENT 0 Y12-3h21.q1k chr06 888 472 87981 87980 C 417 0.00 1336 reject_low 13 ALIGNMENT 20 Y12-3h21.q1k chr13 472 451 539497 539518 C 22 100.00 1336 reject_low 9 ALIGNMENT 20 Y12-3h21.q1k chr08 468 433 541246 541281 C 36 94.44 1336 reject_low 16 ALIGNMENT 0 Y12-3h21.q1k chr05 414 62 83218 83217 C 353 0.00 1336 reject_low 5 ALIGNMENT 0 Y12-3h21.q1k chr12 471 888 556366 556365 F 418 0.00 1336 reject_low 14 ALIGNMENT 0 Y12-3h21.q1k chr15 62 432 235376 235375 F 371 0.00 1336 reject_low 11 ALIGNMENT 0 Y12-3h21.q1k chr02 62 411 72348 72347 F 350 0.00 1336 reject_low 4 ALIGNMENT 28 Y12-3h21.q1k chr02 412 470 780338 780396 F 59 91.53 1336 reject_low 1 ALIGNMENT 23 Y12-3h21.q1k chr15 433 468 235376 235411 F 36 97.22 1336 reject_low 11 ALIGNMENT 21 Y12-3h21.q1k chr02 412 458 72348 72394 F 47 91.49 1336 reject_low 4 ALIGNMENT 0 Y12-3h21.q1k chr02 62 422 780313 780312 F 361 0.00 1336 reject_low 6 ALIGNMENT 0 Y12-3h21.q1k chr02 471 888 780360 780359 F 418 0.00 1336 reject_low 6 ALIGNMENT 24 Y12-3h21.q1k chr02 423 470 780313 780360 F 48 91.67 1336 reject_low 6 ALIGNMENT 22 Y12-3h21.q1k chr06 471 435 87980 88016 C 37 94.59 1336 reject_low 13 ALIGNMENT 0 Y12-3h21.q1k chr02 472 888 780451 780450 F 417 0.00 1336 reject_low 2 ALIGNMENT 25 Y12-3h21.q1k chr05 471 415 83161 83217 C 57 89.47 1336 reject_low 5 ALIGNMENT 29 Y12-3h21.q1k chr09 471 421 169456 169506 C 51 94.12 1336 reject_low 3 ALIGNMENT 0 Y12-3h21.q1k chr13 62 438 44375 44374 F 377 0.00 1336 reject_low 12 ALIGNMENT 0 Y12-3h21.q1k chr06 472 888 160591 160590 F 417 0.00 1336 reject_low 10 ALIGNMENT 0 Y12-3h21.q1k chr15 469 888 235411 235410 F 420 0.00 1336 reject_low 11 ALIGNMENT 1038 Y12-3h21.p1k chr04 20 1216 917565 918768 F 1197 97.08 1367 accept 0 ALIGNMENT 0 Y12-3h21.q1k chr05 888 472 83162 83161 C 417 0.00 1336 reject_low 5 ALIGNMENT 0 Y12-3h21.q1k chr12 62 441 556338 556337 F 380 0.00 1336 reject_low 14 ALIGNMENT 0 Y12-3h21.q1k chr04 472 888 747530 747529 F 417 0.00 1336 reject_low 7 ALIGNMENT 0 Y12-3h21.q1k chr08 888 469 541247 541246 C 420 0.00 1336 reject_low 16 ALIGNMENT 31 Y12-3h21.q1k chr02 415 471 780395 780451 F 57 92.98 1336 reject_low 2 ALIGNMENT 916 Y12-3h22.p1k chr03 1064 19 33259 34318 C 1046 97.32 1259 accept 0 ALIGNMENT 931 Y12-3h22.q1k chr03 35 1260 29725 30964 F 1226 94.21 1365 accept 0 ALIGNMENT 999 Y12-3h23.q1k chr07 1225 39 261812 262997 C 1187 95.70 1348 accept 0 ALIGNMENT 985 Y12-3h23.p1k chr07 20 1273 256829 258095 F 1254 95.22 1333 accept 0 ALIGNMENT 922 Y12-3h24.q1k chr15 1005 41 218477 219439 C 965 99.17 1335 accept 0 ALIGNMENT 705 Y12-3h24.p1k chr15 291 1113 213998 214820 F 823 96.48 1273 accept 0 ALIGNMENT 602 Y12-3i01.p1k chr12 1041 264 49622 50412 C 778 93.44 1399 accept 0 ALIGNMENT 922 Y12-3i01.q1k chr12 37 1099 45667 46729 F 1063 97.46 1348 accept 0 ALIGNMENT 0 Y12-3i03.q1k chr16 789 903 108073 108072 F 115 0.00 1430 reject_low 1 ALIGNMENT 0 Y12-3i03.q1k chr16 62 442 107728 107727 F 381 0.00 1430 reject_low 1 ALIGNMENT 1040 Y12-3i03.q1k chr13 1264 38 626519 627748 C 1227 96.58 1430 accept 0 ALIGNMENT 134 Y12-3i03.q1k chr16 443 788 107728 108073 F 346 80.35 1430 reject_low 1 ALIGNMENT 713 Y12-3i03.p1k chr13 301 1198 623637 624548 F 898 94.54 1478 accept 0 ALIGNMENT 1046 Y12-3i04.q1k chr15 1193 35 619770 620932 C 1159 97.24 1400 accept 0 ALIGNMENT 694 Y12-3i04.p1k chr15 262 1142 615428 616312 F 881 94.55 1388 accept 0 ALIGNMENT 157 Y12-3i05.p1k chr14 26 406 752815 753192 F 381 81.36 1121 reject_low 3 ALIGNMENT 342 Y12-3i05.q1k chr12 594 121 1062077 1062547 C 474 91.98 1452 reject_low 6 ALIGNMENT 222 Y12-3i05.p1k chr09 404 26 13301 13676 C 379 87.07 1121 ambiguous_tel 0 ALIGNMENT 346 Y12-3i05.q1k chr15 160 940 12317 13096 F 781 82.71 1452 reject_low 2 ALIGNMENT 86 Y12-3i05.q1k chr12 32 231 13739 13929 F 200 84.50 1452 reject_low 12 ALIGNMENT 0 Y12-3i05.q1k chr08 355 692 12912 12911 F 338 0.00 1452 reject_low 13 ALIGNMENT 20 Y12-3i05.q1k chr12 267 291 13979 14003 F 25 96.00 1452 reject_low 12 ALIGNMENT 0 Y12-3i05.q1k chr11 420 692 2850 2849 F 273 0.00 1452 reject_low 8 ALIGNMENT 82 Y12-3i05.q1k chr02 32 227 8262 8448 F 196 83.67 1452 reject_low 11 ALIGNMENT 354 Y12-3i05.q1k chr14 810 96 780862 781571 C 715 85.03 1452 reject_low 4 ALIGNMENT 212 Y12-3i05.q1k chr01 32 383 2459 2800 F 352 89.20 1452 reject_low 9 ALIGNMENT 0 Y12-3i05.q1k chr08 223 329 12764 12886 F 107 0.00 1452 reject_low 13 ALIGNMENT 21 Y12-3i05.q1k chr08 330 354 12887 12912 F 25 96.00 1452 reject_low 13 ALIGNMENT 222 Y12-3i05.p1k chr10 404 26 13284 13659 C 379 87.07 1121 ambiguous_tel 1 ALIGNMENT 732 Y12-3i05.q1k chr09 104 1236 9509 10641 F 1133 89.59 1452 ambiguous_tel 0 ALIGNMENT 0 Y12-3i05.q1k chr02 228 692 8448 8447 F 465 0.00 1452 reject_low 11 ALIGNMENT 732 Y12-3i05.q1k chr10 104 1236 9492 10624 F 1133 89.59 1452 ambiguous_tel 1 ALIGNMENT 0 Y12-3i05.q1k chr12 232 266 13930 13978 F 35 0.00 1452 reject_low 12 ALIGNMENT 0 Y12-3i05.q1k chr12 292 692 14003 14002 F 401 0.00 1452 reject_low 12 ALIGNMENT 245 Y12-3i05.q1k chr07 90 428 6992 7331 F 339 91.74 1452 reject_low 10 ALIGNMENT 263 Y12-3i05.q1k chr09 428 90 433245 433585 C 339 93.51 1452 reject_low 7 ALIGNMENT 79 Y12-3i05.q1k chr08 83 222 12627 12763 F 140 87.14 1452 reject_low 13 ALIGNMENT 264 Y12-3i05.q1k chr11 90 419 2522 2850 F 330 94.24 1452 reject_low 8 ALIGNMENT 388 Y12-3i05.q1k chr03 716 32 306846 307503 C 685 88.18 1452 reject_low 5 ALIGNMENT 0 Y12-3i05.q1k chr15 122 159 12317 12316 F 38 0.00 1452 reject_low 2 ALIGNMENT 0 Y12-3i05.q1k chr01 384 692 2800 2799 F 309 0.00 1452 reject_low 9 ALIGNMENT 0 Y12-3i05.q1k chr07 429 692 7331 7330 F 264 0.00 1452 reject_low 10 ALIGNMENT 0 Y12-3i05.q1k chr12 692 595 1062078 1062077 C 98 0.00 1452 reject_low 6 ALIGNMENT 0 Y12-3i05.q1k chr09 692 429 433246 433245 C 264 0.00 1452 reject_low 7 ALIGNMENT 932 Y12-3i06.q1k chr14 41 1093 53827 54892 F 1053 97.63 1344 accept_chi 1 ALIGNMENT 953 Y12-3i06.p1k chr04 30 1118 892746 893844 F 1089 96.42 1350 accept_chi 0 ALIGNMENT 1025 Y12-3i07.p1k chr05 31 1167 299511 300658 F 1137 97.19 1438 accept 0 ALIGNMENT 337 Y12-3i07.p1k chr09 853 93 239320 240080 C 761 81.87 1438 reject_low 1 ALIGNMENT 982 Y12-3i07.q1k chr05 1166 38 304600 305740 C 1129 96.46 1418 accept 0 ALIGNMENT 0 Y12-3i07.p1k chr09 92 62 240081 240080 C 31 0.00 1438 reject_low 1 ALIGNMENT 1001 Y12-3i08.q1k chr03 1232 38 126939 128141 C 1195 95.98 1427 accept 0 ALIGNMENT 0 Y12-3i08.q1k chr12 62 382 975970 975969 F 321 0.00 1427 reject_low 2 ALIGNMENT 0 Y12-3i08.q1k chr14 379 62 632686 632685 C 318 0.00 1427 reject_low 1 ALIGNMENT 82 Y12-3i08.q1k chr12 383 472 975970 976058 F 90 97.78 1427 reject_low 2 ALIGNMENT 0 Y12-3i08.q1k chr14 867 466 632602 632601 C 402 0.00 1427 reject_low 1 ALIGNMENT 0 Y12-3i08.q1k chr07 867 471 731138 731137 C 397 0.00 1427 reject_low 3 ALIGNMENT 0 Y12-3i08.q1k chr07 389 62 731218 731217 C 328 0.00 1427 reject_low 3 ALIGNMENT 0 Y12-3i08.q1k chr15 383 62 228411 228410 C 322 0.00 1427 reject_low 6 ALIGNMENT 0 Y12-3i08.q1k chr14 382 62 102799 102798 C 321 0.00 1427 reject_low 5 ALIGNMENT 0 Y12-3i08.p1k chr14 62 836 631839 631838 F 775 0.00 1372 reject_low 1 ALIGNMENT 0 Y12-3i08.q1k chr06 466 867 137554 137553 F 402 0.00 1427 reject_low 9 ALIGNMENT 0 Y12-3i08.q1k chr15 867 466 228330 228329 C 402 0.00 1427 reject_low 6 ALIGNMENT 78 Y12-3i08.q1k chr14 465 380 632601 632685 C 86 97.67 1427 reject_low 1 ALIGNMENT 0 Y12-3i08.q1k chr06 62 389 137479 137478 F 328 0.00 1427 reject_low 9 ALIGNMENT 80 Y12-3i08.q1k chr14 465 383 102716 102798 C 83 98.80 1427 reject_low 5 ALIGNMENT 0 Y12-3i08.q1k chr16 867 467 810672 810671 C 401 0.00 1427 reject_low 8 ALIGNMENT 79 Y12-3i08.q1k chr15 465 384 228329 228410 C 82 98.78 1427 reject_low 6 ALIGNMENT 0 Y12-3i08.q1k chr15 382 62 487523 487522 C 321 0.00 1427 reject_low 4 ALIGNMENT 0 Y12-3i08.q1k chr14 867 466 102717 102716 C 402 0.00 1427 reject_low 5 ALIGNMENT 0 Y12-3i08.q1k chr16 390 62 810747 810746 C 329 0.00 1427 reject_low 8 ALIGNMENT 1020 Y12-3i08.p1k chr03 21 1230 122747 123971 F 1210 95.21 1372 accept 0 ALIGNMENT 0 Y12-3i08.q1k chr11 382 62 74712 74711 C 321 0.00 1427 reject_low 7 ALIGNMENT 0 Y12-3i08.q1k chr11 867 466 74630 74629 C 402 0.00 1427 reject_low 7 ALIGNMENT 76 Y12-3i08.q1k chr06 390 465 137479 137554 F 76 100.00 1427 reject_low 9 ALIGNMENT 0 Y12-3i08.q1k chr12 473 867 976058 976057 F 395 0.00 1427 reject_low 2 ALIGNMENT 0 Y12-3i08.q1k chr15 867 466 487441 487440 C 402 0.00 1427 reject_low 4 ALIGNMENT 78 Y12-3i08.q1k chr07 470 390 731137 731217 C 81 98.77 1427 reject_low 3 ALIGNMENT 76 Y12-3i08.q1k chr16 466 391 810671 810746 C 76 100.00 1427 reject_low 8 ALIGNMENT 77 Y12-3i08.q1k chr11 465 383 74629 74711 C 83 97.59 1427 reject_low 7 ALIGNMENT 83 Y12-3i08.q1k chr15 465 383 487440 487522 C 83 100.00 1427 reject_low 4 ALIGNMENT 69 Y12-3i08.p1k chr14 837 918 631839 631919 F 82 97.56 1372 reject_low 1 ALIGNMENT 1028 Y12-3i09.p1k chr09 21 1204 130872 132069 F 1184 96.54 1472 accept 0 ALIGNMENT 954 Y12-3i09.q1k chr09 1168 36 135302 136442 C 1133 96.12 1397 accept 0 ALIGNMENT 925 Y12-3i10.p1k chr12 1099 16 342947 344046 C 1084 96.40 1341 accept 0 ALIGNMENT 986 Y12-3i10.q1k chr12 39 1208 339594 340774 F 1170 95.73 1396 accept 0 ALIGNMENT 961 Y12-3i11.q1k chr05 1170 33 146421 147573 C 1138 96.49 1370 accept 0 ALIGNMENT 987 Y12-3i11.p1k chr05 22 1161 143907 145059 F 1140 96.93 1456 accept 0 ALIGNMENT 1013 Y12-3i12.q1k chr08 1138 44 175858 176961 C 1095 97.63 1382 accept 0 ALIGNMENT 939 Y12-3i12.p1k chr08 17 1086 172104 173185 F 1070 96.36 1340 accept 0 ALIGNMENT 891 Y12-3i13.p1k chr12 77 1120 451419 452491 F 1044 95.88 1464 reject_low 1 ALIGNMENT 0 Y12-3i13.p1k chr12 62 424 489754 489753 F 363 0.00 1464 reject_low 2 ALIGNMENT 601 Y12-3i13.p1k chr12 425 1120 489754 490459 F 696 96.12 1464 reject_low 2 ALIGNMENT 0 Y12-3i13.p1k chr12 62 76 451419 451418 F 15 0.00 1464 reject_low 1 ALIGNMENT 918 Y12-3i13.q1k chr12 1055 38 454593 455621 C 1018 97.74 1352 reject_low 1 ALIGNMENT 931 Y12-3i13.p1k chr12 23 1120 460499 461628 F 1098 95.81 1464 accept 0 ALIGNMENT 918 Y12-3i13.q1k chr12 1055 38 463730 464758 C 1018 97.74 1352 accept 0 ALIGNMENT 811 Y12-3i14.p1k chr12 1042 21 467487 468523 C 1022 95.30 1300 accept 1 ALIGNMENT 63 Y12-3i14.p1k chr06 21 98 31651 31729 F 78 96.15 1300 reject_low 2 ALIGNMENT 1011 Y12-3i14.q1k chr12 36 1208 466070 467257 F 1173 96.33 1425 accept 1 ALIGNMENT 0 Y12-3i14.p1k chr06 99 804 31729 31728 F 706 0.00 1300 reject_low 2 ALIGNMENT 1011 Y12-3i14.q1k chr12 36 1208 456933 458120 F 1173 96.33 1425 accept 0 ALIGNMENT 811 Y12-3i14.p1k chr12 1042 21 458350 459386 C 1022 95.30 1300 accept 0 ALIGNMENT 911 Y12-3i15.q1k chr13 54 1167 48417 49546 F 1114 95.15 1375 accept 0 ALIGNMENT 926 Y12-3i15.p1k chr13 1070 19 52406 53468 C 1052 97.15 1347 accept 0 ALIGNMENT 904 Y12-3i16.p1k chr05 15 1099 111730 112819 F 1085 95.94 1377 accept_chi 1 ALIGNMENT 1002 Y12-3i16.q1k chr11 41 1131 139445 140542 F 1091 98.35 1361 accept_chi 0 ALIGNMENT 858 Y12-3i17.q1k chr13 37 1095 407635 408701 F 1059 94.33 1403 accept 0 ALIGNMENT 628 Y12-3i17.p1k chr13 1050 276 412194 412971 C 775 94.45 1504 accept 0 ALIGNMENT 876 Y12-3i18.q1k chr12 35 1052 211878 212913 F 1018 96.56 1305 accept 0 ALIGNMENT 847 Y12-3i18.p1k chr12 1044 21 223254 224303 C 1024 95.70 1287 accept 0 ALIGNMENT 941 Y12-3i19.p1k chr12 1166 24 207069 208227 C 1143 94.58 1391 accept 0 ALIGNMENT 936 Y12-3i19.q1k chr12 37 1142 204205 205319 F 1106 96.38 1361 accept 0 ALIGNMENT 0 Y12-3i20.p1k chr02 273 207 187006 187065 C 67 0.00 1323 accept 0 ALIGNMENT 39 Y12-3i20.p1k chr02 206 97 187066 187171 C 110 80.91 1323 accept 0 ALIGNMENT 774 Y12-3i20.p1k chr02 1260 274 186010 187005 C 987 94.22 1323 accept 0 ALIGNMENT 1043 Y12-3i20.q1k chr02 37 1255 182015 183250 F 1219 95.98 1386 accept 0 ALIGNMENT 484 Y12-3i21.p1k chr15 1018 386 471246 471881 C 633 92.89 1451 accept 0 ALIGNMENT 787 Y12-3i21.q1k chr15 39 1116 467022 468098 F 1078 91.93 1342 accept 0 ALIGNMENT 854 Y12-3i23.q1k chr07 31 1045 930159 931167 F 1015 95.76 1298 accept 0 ALIGNMENT 67 Y12-3i23.q1k chr06 819 903 180955 181038 F 85 91.76 1298 reject_low 15 ALIGNMENT 63 Y12-3i23.q1k chr15 831 902 226609 226680 F 72 93.06 1298 reject_low 20 ALIGNMENT 67 Y12-3i23.q1k chr02 822 903 197623 197704 F 82 91.46 1298 reject_low 16 ALIGNMENT 0 Y12-3i23.q1k chr10 812 62 531831 531830 C 751 0.00 1298 reject_low 12 ALIGNMENT 64 Y12-3i23.q1k chr16 903 831 860373 860445 C 73 93.15 1298 reject_low 18 ALIGNMENT 0 Y12-3i23.q1k chr15 62 1040 970272 970271 F 979 0.00 1298 reject_low 1 ALIGNMENT 0 Y12-3i23.q1k chr03 62 1049 84809 84808 F 988 0.00 1298 reject_low 3 ALIGNMENT 0 Y12-3i23.q1k chr10 62 1050 538017 538016 F 989 0.00 1298 reject_low 11 ALIGNMENT 0 Y12-3i23.q1k chr03 62 1041 84059 84058 F 980 0.00 1298 reject_low 2 ALIGNMENT 0 Y12-3i23.q1k chr08 1050 62 389513 389512 C 989 0.00 1298 reject_low 10 ALIGNMENT 0 Y12-3i23.q1k chr08 1050 62 92096 92095 C 989 0.00 1298 reject_low 9 ALIGNMENT 70 Y12-3i23.q1k chr08 1192 1051 91948 92095 C 142 85.92 1298 reject_low 9 ALIGNMENT 72 Y12-3i23.q1k chr03 1042 1192 84059 84215 F 151 84.77 1298 reject_low 2 ALIGNMENT 0 Y12-3i23.q1k chr05 62 830 61890 61889 F 769 0.00 1298 reject_low 22 ALIGNMENT 0 Y12-3i23.q1k chr16 830 62 860446 860445 C 769 0.00 1298 reject_low 18 ALIGNMENT 977 Y12-3i23.p1k chr07 1158 21 935533 936681 C 1138 96.49 1366 accept 0 ALIGNMENT 0 Y12-3i23.q1k chr03 62 829 142697 142696 F 768 0.00 1298 reject_low 19 ALIGNMENT 0 Y12-3i23.q1k chr04 1050 62 878632 878631 C 989 0.00 1298 reject_low 7 ALIGNMENT 64 Y12-3i23.q1k chr03 830 902 142697 142769 F 73 93.15 1298 reject_low 19 ALIGNMENT 70 Y12-3i23.q1k chr08 1192 1051 389365 389512 C 142 85.92 1298 reject_low 10 ALIGNMENT 73 Y12-3i23.q1k chr15 1041 1192 970272 970429 F 152 84.87 1298 reject_low 1 ALIGNMENT 70 Y12-3i23.q1k chr10 821 903 396632 396714 F 83 92.77 1298 reject_low 14 ALIGNMENT 0 Y12-3i23.q1k chr03 1050 62 168929 168928 C 989 0.00 1298 reject_low 6 ALIGNMENT 61 Y12-3i23.q1k chr16 901 831 572266 572336 C 71 92.96 1298 reject_low 21 ALIGNMENT 0 Y12-3i23.q1k chr15 62 830 226609 226608 F 769 0.00 1298 reject_low 20 ALIGNMENT 0 Y12-3i23.q1k chr07 830 62 845725 845724 C 769 0.00 1298 reject_low 17 ALIGNMENT 71 Y12-3i23.q1k chr03 1050 1192 84809 84957 F 143 86.01 1298 reject_low 3 ALIGNMENT 70 Y12-3i23.q1k chr03 1192 1051 168781 168928 C 142 85.92 1298 reject_low 6 ALIGNMENT 0 Y12-3i23.q1k chr05 904 1050 61963 62141 F 147 0.00 1298 reject_low 22 ALIGNMENT 70 Y12-3i23.q1k chr10 1051 1192 538017 538164 F 142 85.92 1298 reject_low 11 ALIGNMENT 70 Y12-3i23.q1k chr02 1051 1192 9093 9240 F 142 85.92 1298 reject_low 5 ALIGNMENT 70 Y12-3i23.q1k chr04 1192 1051 878484 878631 C 142 85.92 1298 reject_low 7 ALIGNMENT 70 Y12-3i23.q1k chr06 903 817 162220 162307 C 87 91.95 1298 reject_low 13 ALIGNMENT 0 Y12-3i23.q1k chr10 62 820 396632 396631 F 759 0.00 1298 reject_low 14 ALIGNMENT 64 Y12-3i23.q1k chr05 831 903 61890 61962 F 73 93.15 1298 reject_low 22 ALIGNMENT 0 Y12-3i23.q1k chr02 62 821 197623 197622 F 760 0.00 1298 reject_low 16 ALIGNMENT 71 Y12-3i23.q1k chr05 1192 1050 135792 135940 C 143 86.01 1298 reject_low 4 ALIGNMENT 0 Y12-3i23.q1k chr06 62 1050 143535 143534 F 989 0.00 1298 reject_low 8 ALIGNMENT 0 Y12-3i23.q1k chr02 62 1050 9093 9092 F 989 0.00 1298 reject_low 5 ALIGNMENT 0 Y12-3i23.q1k chr05 1049 62 135941 135940 C 988 0.00 1298 reject_low 4 ALIGNMENT 70 Y12-3i23.q1k chr06 1051 1192 143535 143682 F 142 85.92 1298 reject_low 8 ALIGNMENT 64 Y12-3i23.q1k chr07 903 831 845652 845724 C 73 93.15 1298 reject_low 17 ALIGNMENT 0 Y12-3i23.q1k chr16 830 62 572337 572336 C 769 0.00 1298 reject_low 21 ALIGNMENT 0 Y12-3i23.q1k chr06 816 62 162308 162307 C 755 0.00 1298 reject_low 13 ALIGNMENT 67 Y12-3i23.q1k chr10 902 813 531741 531830 C 90 90.00 1298 reject_low 12 ALIGNMENT 0 Y12-3i23.q1k chr06 62 818 180955 180954 F 757 0.00 1298 reject_low 15 ALIGNMENT 70 Y12-3i23.q1k chr05 1051 1192 62142 62289 F 142 85.92 1298 reject_low 22 ALIGNMENT 636 Y12-3i24.q1k chr04 1162 38 533240 534368 C 1125 86.04 1308 reject_low 2 ALIGNMENT 675 Y12-3i24.q1k chr04 1162 38 537125 538253 C 1125 87.20 1308 accept 0 ALIGNMENT 0 Y12-3i24.p1k chr02 287 711 363630 363629 F 425 0.00 1297 reject_low 3 ALIGNMENT 83 Y12-3i24.p1k chr02 712 925 363630 363844 F 214 80.84 1297 reject_low 3 ALIGNMENT 636 Y12-3i24.q1k chr04 1162 38 529355 530483 C 1125 86.04 1308 reject_low 1 ALIGNMENT 673 Y12-3i24.p1k chr04 67 1269 525790 526980 F 1203 86.78 1297 accept 0 ALIGNMENT 423 Y12-3j01.p1k chr16 995 290 614022 614714 C 706 87.25 1400 accept 0 ALIGNMENT 197 Y12-3j02.p1k chr11 262 531 415571 415834 F 270 92.96 1507 accept 0 ALIGNMENT 972 Y12-3j02.q1k chr11 1141 35 418622 419739 C 1107 97.20 1333 accept 0 ALIGNMENT 786 Y12-3j03.p1k chr02 305 1228 633596 634530 F 924 96.21 1416 accept 0 ALIGNMENT 1019 Y12-3j03.q1k chr02 1172 39 638374 639519 C 1134 97.71 1382 accept 0 ALIGNMENT 1000 Y12-3j04.q1k chr02 1181 35 650303 651453 C 1147 96.16 1416 accept 0 ALIGNMENT 374 Y12-3j04.p1k chr02 230 1141 645533 646451 F 912 81.91 1422 accept 0 ALIGNMENT 931 Y12-3j05.q1k chr08 1283 40 183197 184454 C 1244 93.33 1469 accept 0 ALIGNMENT 689 Y12-3j05.p1k chr08 306 1133 180134 180978 F 828 95.65 1385 accept 0 ALIGNMENT 303 Y12-3j06.p1k chr11 371 963 289954 290550 F 593 84.82 1316 accept 0 ALIGNMENT 794 Y12-3j07.q1k chr06 1075 38 257805 258877 C 1038 93.74 1355 accept 0 ALIGNMENT 1053 Y12-3j07.p1k chr06 20 1312 252554 253842 F 1293 95.13 1434 accept 0 ALIGNMENT 976 Y12-3j08.p1k chr12 1157 21 998899 1000051 C 1137 96.22 1340 accept 0 ALIGNMENT 897 Y12-3j08.q1k chr12 38 1057 995607 996641 F 1020 96.76 1373 accept 0 ALIGNMENT 1012 Y12-3j09.q1k chr10 37 1170 615533 616672 F 1134 97.35 1396 accept 0 ALIGNMENT 963 Y12-3j09.p1k chr10 1209 22 619434 620626 C 1188 95.62 1415 accept 0 ALIGNMENT 34 Y12-3j10.q1k chr04 951 1021 437575 437645 F 71 84.51 1389 reject_low 26 ALIGNMENT 87 Y12-3j10.q1k chr03 929 1068 142933 143074 F 140 90.71 1389 reject_low 22 ALIGNMENT 0 Y12-3j10.q1k chr08 923 62 133821 133820 C 862 0.00 1389 reject_low 23 ALIGNMENT 0 Y12-3j10.q1k chr05 62 552 354356 354355 F 491 0.00 1389 reject_low 14 ALIGNMENT 93 Y12-3j10.q1k chr08 929 1068 543797 543938 F 140 92.14 1389 reject_low 18 ALIGNMENT 0 Y12-3j10.q1k chr14 62 928 561518 561517 F 867 0.00 1389 reject_low 28 ALIGNMENT 808 Y12-3j10.p1k chr12 918 21 735936 736847 C 898 97.55 1254 accept 0 ALIGNMENT 0 Y12-3j10.q1k chr14 62 552 632121 632120 F 491 0.00 1389 reject_low 13 ALIGNMENT 824 Y12-3j10.q1k chr10 923 37 197464 198351 C 887 99.32 1389 ambiguous_trans 1 ALIGNMENT 0 Y12-3j10.q1k chr13 62 552 808536 808535 F 491 0.00 1389 reject_low 15 ALIGNMENT 0 Y12-3j10.q1k chr04 552 62 437516 437515 C 491 0.00 1389 reject_low 16 ALIGNMENT 0 Y12-3j10.q1k chr14 552 62 561979 561978 C 491 0.00 1389 reject_low 10 ALIGNMENT 321 Y12-3j10.q1k chr14 553 923 632121 632491 F 371 97.04 1389 reject_low 13 ALIGNMENT 295 Y12-3j10.q1k chr07 553 923 931174 931543 F 371 94.88 1389 reject_low 17 ALIGNMENT 0 Y12-3j10.q1k chr14 764 62 96610 96609 C 703 0.00 1389 reject_low 24 ALIGNMENT 330 Y12-3j10.q1k chr08 923 553 91387 91757 C 371 97.84 1389 reject_low 9 ALIGNMENT 0 Y12-3j10.q1k chr03 62 928 124318 124317 F 867 0.00 1389 reject_low 21 ALIGNMENT 0 Y12-3j10.q1k chr08 62 928 116603 116602 F 867 0.00 1389 reject_low 19 ALIGNMENT 0 Y12-3j10.q1k chr04 62 950 437575 437574 F 889 0.00 1389 reject_low 26 ALIGNMENT 0 Y12-3j10.q1k chr15 632 62 704064 704063 C 571 0.00 1389 reject_low 20 ALIGNMENT 0 Y12-3j10.q1k chr07 62 928 111366 111365 F 867 0.00 1389 reject_low 27 ALIGNMENT 806 Y12-3j10.q1k chr08 923 37 85535 86422 C 887 98.65 1389 ambiguous_trans 2 ALIGNMENT 86 Y12-3j10.q1k chr08 1044 924 133700 133820 C 121 92.56 1389 reject_low 23 ALIGNMENT 343 Y12-3j10.q1k chr10 923 552 203319 203690 C 372 98.92 1389 reject_low 5 ALIGNMENT 20 Y12-3j10.q1k chr14 929 956 561518 561545 F 28 92.86 1389 reject_low 28 ALIGNMENT 0 Y12-3j10.q1k chr09 62 552 196650 196649 F 491 0.00 1389 reject_low 7 ALIGNMENT 803 Y12-3j10.q1k chr16 37 923 442222 443109 F 887 98.53 1389 ambiguous_trans 3 ALIGNMENT 318 Y12-3j10.q1k chr05 553 923 354356 354726 F 371 96.77 1389 reject_low 14 ALIGNMENT 87 Y12-3j10.q1k chr03 929 1068 124318 124459 F 140 90.71 1389 reject_low 21 ALIGNMENT 313 Y12-3j10.q1k chr13 553 923 808536 808905 F 371 96.50 1389 reject_low 15 ALIGNMENT 342 Y12-3j10.q1k chr09 553 923 196650 197020 F 371 98.92 1389 reject_low 7 ALIGNMENT 298 Y12-3j10.q1k chr04 923 553 437146 437515 C 371 95.15 1389 reject_low 16 ALIGNMENT 132 Y12-3j10.q1k chr14 923 765 96451 96609 C 159 95.60 1389 reject_low 24 ALIGNMENT 325 Y12-3j10.q1k chr02 552 923 643482 643853 F 372 97.31 1389 reject_low 12 ALIGNMENT 0 Y12-3j10.q1k chr02 62 551 643482 643481 F 490 0.00 1389 reject_low 12 ALIGNMENT 23 Y12-3j10.q1k chr07 929 983 111366 111420 F 55 83.64 1389 reject_low 27 ALIGNMENT 0 Y12-3j10.q1k chr08 62 928 543797 543796 F 867 0.00 1389 reject_low 18 ALIGNMENT 0 Y12-3j10.q1k chr08 552 62 91758 91757 C 491 0.00 1389 reject_low 9 ALIGNMENT 0 Y12-3j10.q1k chr10 551 62 203691 203690 C 490 0.00 1389 reject_low 5 ALIGNMENT 330 Y12-3j10.q1k chr14 923 553 561608 561978 C 371 97.84 1389 reject_low 10 ALIGNMENT 0 Y12-3j10.q1k chr07 62 552 931174 931173 F 491 0.00 1389 reject_low 17 ALIGNMENT 0 Y12-3j10.q1k chr16 62 551 436886 436885 F 490 0.00 1389 reject_low 8 ALIGNMENT 252 Y12-3j10.q1k chr15 923 633 703773 704063 C 291 96.91 1389 reject_low 20 ALIGNMENT 0 Y12-3j10.q1k chr13 551 62 504142 504141 C 490 0.00 1389 reject_low 4 ALIGNMENT 331 Y12-3j10.q1k chr16 552 923 436886 437257 F 372 97.85 1389 reject_low 8 ALIGNMENT 0 Y12-3j10.q1k chr03 62 928 142933 142932 F 867 0.00 1389 reject_low 22 ALIGNMENT 342 Y12-3j10.q1k chr02 553 923 35848 36218 F 371 98.92 1389 reject_low 6 ALIGNMENT 90 Y12-3j10.q1k chr08 929 1068 116603 116744 F 140 91.43 1389 reject_low 19 ALIGNMENT 39 Y12-3j10.q1k chr08 929 1068 91952 92092 F 140 79.29 1389 reject_low 25 ALIGNMENT 0 Y12-3j10.q1k chr08 62 928 91952 91951 F 867 0.00 1389 reject_low 25 ALIGNMENT 0 Y12-3j10.q1k chr02 62 552 35848 35847 F 491 0.00 1389 reject_low 6 ALIGNMENT 327 Y12-3j10.q1k chr07 923 553 110859 111229 C 371 97.57 1389 reject_low 11 ALIGNMENT 345 Y12-3j10.q1k chr13 943 552 503749 504141 C 392 97.70 1389 reject_low 4 ALIGNMENT 0 Y12-3j10.q1k chr07 552 62 111230 111229 C 491 0.00 1389 reject_low 11 ALIGNMENT 909 Y12-3j11.q1k chr12 1127 38 457617 458718 C 1090 95.69 1391 accept 0 ALIGNMENT 1004 Y12-3j11.p1k chr12 18 1159 463410 464565 F 1142 97.02 1401 accept 1 ALIGNMENT 1004 Y12-3j11.p1k chr12 18 1159 454273 455428 F 1142 97.02 1401 accept 0 ALIGNMENT 909 Y12-3j11.q1k chr12 1127 38 466754 467855 C 1090 95.69 1391 accept 1 ALIGNMENT 1024 Y12-3j12.p1k chr16 23 1223 745514 746724 F 1201 96.00 1419 accept 0 ALIGNMENT 956 Y12-3j12.q1k chr16 1102 37 748851 749924 C 1066 97.75 1387 accept 0 ALIGNMENT 0 Y12-3j13.p1k chr08 745 836 3741 3740 F 92 0.00 1354 reject_low 15 ALIGNMENT 0 Y12-3j13.p1k chr12 626 687 3937 3952 F 62 0.00 1354 reject_low 17 ALIGNMENT 52 Y12-3j13.p1k chr02 466 521 4033 4088 F 56 98.21 1354 reject_low 13 ALIGNMENT 0 Y12-3j13.p1k chr08 595 576 558724 558719 C 20 0.00 1354 reject_low 16 ALIGNMENT 0 Y12-3j13.p1k chr16 465 62 944346 944345 C 404 0.00 1354 reject_low 19 ALIGNMENT 0 Y12-3j13.p1k chr05 911 964 4590 4585 F 54 0.00 1354 ambiguous_tel 11 ALIGNMENT 29 Y12-3j13.p1k chr12 543 575 3878 3910 F 33 96.97 1354 reject_low 17,18 ALIGNMENT 0 Y12-3j13.p1k chr06 62 465 2869 2868 F 404 0.00 1354 reject_low 14 ALIGNMENT 0 Y12-3j13.p1k chr12 62 465 9367 9366 F 404 0.00 1354 reject_low 12 ALIGNMENT 0 Y12-3j13.p1k chr12 576 595 9446 9441 F 20 0.00 1354 reject_low 12 ALIGNMENT 958 Y12-3j13.p1k chr15 1112 20 1086486 1087593 C 1093 96.43 1354 ambiguous_tel 5 ALIGNMENT 845 Y12-3j13.q1k chr03 1027 39 2412 3405 C 989 95.75 1345 ambiguous_trans 0 ALIGNMENT 0 Y12-3j13.p1k chr16 687 626 944225 944240 C 62 0.00 1354 reject_low 19 ALIGNMENT 0 Y12-3j13.p1k chr06 745 836 3046 3045 F 92 0.00 1354 reject_low 14 ALIGNMENT 0 Y12-3j13.p1k chr13 576 595 3787 3782 F 20 0.00 1354 reject_low 20 ALIGNMENT 53 Y12-3j13.p1k chr06 688 744 2990 3046 F 57 98.25 1354 reject_low 14 ALIGNMENT 974 Y12-3j13.p1k chr10 20 1114 4005 5115 F 1095 96.89 1354 ambiguous_tel 2 ALIGNMENT 0 Y12-3j13.p1k chr02 62 465 4033 4032 F 404 0.00 1354 reject_low 13 ALIGNMENT 0 Y12-3j13.p1k chr12 745 836 4009 4008 F 92 0.00 1354 reject_low 17 ALIGNMENT 0 Y12-3j13.p1k chr02 626 687 4138 4153 F 62 0.00 1354 reject_low 13 ALIGNMENT 942 Y12-3j13.p1k chr07 1114 20 1086225 1087334 C 1095 95.98 1354 ambiguous_tel 7 ALIGNMENT 0 Y12-3j13.p1k chr12 522 542 9423 9412 F 21 0.00 1354 reject_low 12 ALIGNMENT 29 Y12-3j13.p1k chr02 543 575 4079 4111 F 33 96.97 1354 reject_low 13 ALIGNMENT 24 Y12-3j13.p1k chr02 596 625 4108 4137 F 30 93.33 1354 reject_low 13 ALIGNMENT 0 Y12-3j13.p1k chr16 542 522 944300 944289 C 21 0.00 1354 reject_low 19 ALIGNMENT 0 Y12-3j13.p1k chr12 522 542 3888 3877 F 21 0.00 1354 reject_low 17,18 ALIGNMENT 22 Y12-3j13.p1k chr05 876 910 4555 4589 F 35 85.71 1354 ambiguous_tel 11 ALIGNMENT 24 Y12-3j13.p1k chr12 596 625 3907 3936 F 30 93.33 1354 reject_low 17,18 ALIGNMENT 820 Y12-3j13.p1k chr12 860 20 1067125 1067966 C 841 99.29 1354 ambiguous_tel 10 ALIGNMENT 0 Y12-3j13.p1k chr06 626 687 2974 2989 F 62 0.00 1354 reject_low 14 ALIGNMENT 0 Y12-3j13.p1k chr08 576 595 3643 3638 F 20 0.00 1354 reject_low 15 ALIGNMENT 768 Y12-3j13.p1k chr05 20 860 3698 4558 F 841 97.27 1354 ambiguous_tel 11 ALIGNMENT 24 Y12-3j13.p1k chr13 596 625 3783 3812 F 30 93.33 1354 reject_low 20 ALIGNMENT 53 Y12-3j13.p1k chr02 688 744 4154 4210 F 57 98.25 1354 reject_low 13 ALIGNMENT 0 Y12-3j13.p1k chr02 576 595 4112 4107 F 20 0.00 1354 reject_low 13 ALIGNMENT 0 Y12-3j13.p1k chr12 745 836 9544 9543 F 92 0.00 1354 reject_low 18 ALIGNMENT 52 Y12-3j13.p1k chr06 466 521 2869 2924 F 56 98.21 1354 reject_low 14 ALIGNMENT 49 Y12-3j13.p1k chr13 466 521 3708 3763 F 56 96.43 1354 reject_low 20 ALIGNMENT 0 Y12-3j13.p1k chr06 522 542 2925 2914 F 21 0.00 1354 reject_low 14 ALIGNMENT 942 Y12-3j13.p1k chr05 1114 20 572148 573257 C 1095 95.98 1354 ambiguous_tel 6 ALIGNMENT 53 Y12-3j13.p1k chr13 688 744 3829 3885 F 57 98.25 1354 reject_low 20 ALIGNMENT 24 Y12-3j13.p1k chr08 625 596 558694 558723 C 30 93.33 1354 reject_low 16 ALIGNMENT 52 Y12-3j13.p1k chr12 466 521 3832 3887 F 56 98.21 1354 reject_low 17,18 ALIGNMENT 974 Y12-3j13.p1k chr09 20 1114 4022 5132 F 1095 96.89 1354 ambiguous_tel 1 ALIGNMENT 0 Y12-3j13.p1k chr13 626 687 3813 3828 F 62 0.00 1354 reject_low 20 ALIGNMENT 53 Y12-3j13.p1k chr16 744 688 944168 944224 C 57 98.25 1354 reject_low 19 ALIGNMENT 81 Y12-3j13.p1k chr05 965 1114 4586 4747 F 150 87.33 1354 ambiguous_tel 11 ALIGNMENT 0 Y12-3j13.p1k chr06 576 595 2948 2943 F 20 0.00 1354 reject_low 14 ALIGNMENT 958 Y12-3j13.p1k chr04 1112 20 1527321 1528428 C 1093 96.43 1354 ambiguous_tel 3 ALIGNMENT 24 Y12-3j13.p1k chr06 596 625 2944 2973 F 30 93.33 1354 reject_low 14 ALIGNMENT 53 Y12-3j13.p1k chr12 688 744 9488 9544 F 57 98.25 1354 reject_low 18 ALIGNMENT 29 Y12-3j13.p1k chr16 575 543 944267 944299 C 33 96.97 1354 reject_low 19 ALIGNMENT 0 Y12-3j13.p1k chr08 626 687 3669 3684 F 62 0.00 1354 reject_low 15 ALIGNMENT 52 Y12-3j13.p1k chr12 466 521 9367 9422 F 56 98.21 1354 reject_low 12 ALIGNMENT 29 Y12-3j13.p1k chr13 543 575 3754 3786 F 33 96.97 1354 reject_low 20 ALIGNMENT 942 Y12-3j13.p1k chr14 20 1114 3634 4743 F 1095 95.98 1354 ambiguous_tel 8 ALIGNMENT 52 Y12-3j13.p1k chr16 521 466 944290 944345 C 56 98.21 1354 reject_low 19 ALIGNMENT 0 Y12-3j13.p1k chr12 62 465 3832 3831 F 404 0.00 1354 reject_low 17,18 ALIGNMENT 52 Y12-3j13.p1k chr08 466 521 3564 3619 F 56 98.21 1354 reject_low 15 ALIGNMENT 0 Y12-3j13.p1k chr08 522 542 3620 3609 F 21 0.00 1354 reject_low 15 ALIGNMENT 0 Y12-3j13.p1k chr13 62 465 3708 3707 F 404 0.00 1354 reject_low 20 ALIGNMENT 0 Y12-3j13.p1k chr16 595 576 944271 944266 C 20 0.00 1354 reject_low 19 ALIGNMENT 78 Y12-3j13.p1k chr12 1112 965 1066938 1067097 C 148 87.16 1354 ambiguous_tel 10 ALIGNMENT 24 Y12-3j13.p1k chr08 596 625 3639 3668 F 30 93.33 1354 reject_low 15 ALIGNMENT 0 Y12-3j13.p1k chr08 465 62 558799 558798 C 404 0.00 1354 reject_low 16 ALIGNMENT 0 Y12-3j13.p1k chr13 745 836 3885 3884 F 92 0.00 1354 reject_low 20 ALIGNMENT 53 Y12-3j13.p1k chr08 688 744 3685 3741 F 57 98.25 1354 reject_low 15 ALIGNMENT 0 Y12-3j13.p1k chr08 687 626 558678 558693 C 62 0.00 1354 reject_low 16 ALIGNMENT 0 Y12-3j13.p1k chr12 626 687 3937 9487 F 62 0.00 1354 reject_low 18 ALIGNMENT 29 Y12-3j13.p1k chr12 543 575 9413 9445 F 33 96.97 1354 reject_low 12 ALIGNMENT 0 Y12-3j13.p1k chr02 745 836 4210 4209 F 92 0.00 1354 reject_low 13 ALIGNMENT 53 Y12-3j13.p1k chr08 744 688 558621 558677 C 57 98.25 1354 reject_low 16 ALIGNMENT 29 Y12-3j13.p1k chr08 543 575 3610 3642 F 33 96.97 1354 reject_low 15 ALIGNMENT 0 Y12-3j13.p1k chr12 576 595 3911 3906 F 20 0.00 1354 reject_low 17,18 ALIGNMENT 29 Y12-3j13.p1k chr06 543 575 2915 2947 F 33 96.97 1354 reject_low 14 ALIGNMENT 53 Y12-3j13.p1k chr12 688 744 3953 4009 F 57 98.25 1354 reject_low 17 ALIGNMENT 0 Y12-3j13.p1k chr08 62 465 3564 3563 F 404 0.00 1354 reject_low 15 ALIGNMENT 52 Y12-3j13.p1k chr08 521 466 558743 558798 C 56 98.21 1354 reject_low 16 ALIGNMENT 0 Y12-3j13.p1k chr12 964 861 1067098 1067124 C 104 0.00 1354 ambiguous_tel 10 ALIGNMENT 0 Y12-3j13.p1k chr08 542 522 558753 558742 C 21 0.00 1354 reject_low 16 ALIGNMENT 0 Y12-3j13.p1k chr12 626 836 9471 9470 F 211 0.00 1354 reject_low 12 ALIGNMENT 0 Y12-3j13.p1k chr13 522 542 3764 3753 F 21 0.00 1354 reject_low 20 ALIGNMENT 0 Y12-3j13.p1k chr05 861 875 4559 4554 F 15 0.00 1354 ambiguous_tel 11 ALIGNMENT 958 Y12-3j13.p1k chr12 1112 20 1073522 1074629 C 1093 96.43 1354 ambiguous_tel 4 ALIGNMENT 24 Y12-3j13.p1k chr16 625 596 944241 944270 C 30 93.33 1354 reject_low 19 ALIGNMENT 0 Y12-3j13.p1k chr16 836 745 944169 944168 C 92 0.00 1354 reject_low 19 ALIGNMENT 29 Y12-3j13.p1k chr08 575 543 558720 558752 C 33 96.97 1354 reject_low 16 ALIGNMENT 942 Y12-3j13.p1k chr16 20 1114 3543 4652 F 1095 95.98 1354 ambiguous_tel 9 ALIGNMENT 0 Y12-3j13.p1k chr08 836 745 558622 558621 C 92 0.00 1354 reject_low 16 ALIGNMENT 0 Y12-3j13.p1k chr02 522 542 4089 4078 F 21 0.00 1354 reject_low 13 ALIGNMENT 24 Y12-3j13.p1k chr12 596 625 9442 9471 F 30 93.33 1354 reject_low 12 ALIGNMENT 883 Y12-3j14.p1k chr02 1081 20 276907 277984 C 1062 95.29 1340 accept 0 ALIGNMENT 926 Y12-3j14.q1k chr02 37 1187 273704 274871 F 1151 95.40 1418 accept 0 ALIGNMENT 922 Y12-3j15.p1k chr05 1134 27 480394 481518 C 1108 96.48 1372 accept 0 ALIGNMENT 860 Y12-3j15.q1k chr05 38 1062 476503 477546 F 1025 96.00 1336 accept 0 ALIGNMENT 938 Y12-3j16.p1k chr16 20 1147 129448 130587 F 1128 94.95 1375 accept 0 ALIGNMENT 971 Y12-3j16.q1k chr16 1116 41 132829 133912 C 1076 97.12 1374 accept 0 ALIGNMENT 1039 Y12-3j18.p1k chr04 23 1224 248742 249955 F 1202 96.51 1388 accept 0 ALIGNMENT 850 Y12-3j18.q1k chr04 1013 37 254077 255067 C 977 97.44 1307 accept 0 ALIGNMENT 908 Y12-3j19.p1k chr11 1218 22 220954 222145 C 1197 93.23 1375 accept 0 ALIGNMENT 874 Y12-3j19.q1k chr11 37 995 217593 218558 F 959 98.44 1290 accept 0 ALIGNMENT 1028 Y12-3j20.p1k chr13 1166 23 488441 489581 C 1144 97.73 1324 accept 0 ALIGNMENT 25 Y12-3j22.p1k chr07 626 573 823260 823313 C 54 83.33 1312 reject_low 69 ALIGNMENT 33 Y12-3j22.p1k chr16 949 848 55679 55779 C 102 79.41 1312 reject_low 49 ALIGNMENT 25 Y12-3j22.p1k chr15 572 626 594818 594872 F 55 83.64 1312 reject_low 68 ALIGNMENT 191 Y12-3j22.p1k chr01 990 661 160240 160575 C 330 88.18 1312 reject_low 9 ALIGNMENT 29 Y12-3j22.p1k chr14 660 627 96908 96941 C 34 97.06 1312 reject_low 72 ALIGNMENT 38 Y12-3j22.p1k chr14 577 508 102631 102700 C 70 85.71 1312 reject_low 53,55,74 ALIGNMENT 34 Y12-3j22.p1k chr07 130 315 817427 817612 F 186 75.27 1312 reject_low 19 ALIGNMENT 34 Y12-3j22.p1k chr02 315 130 265278 265463 C 186 75.27 1312 reject_low 18 ALIGNMENT 0 Y12-3j22.p1k chr07 62 129 817427 817426 F 68 0.00 1312 reject_low 19 ALIGNMENT 30 Y12-3j22.p1k chr15 626 660 594820 594854 F 35 97.14 1312 reject_low 51 ALIGNMENT 29 Y12-3j22.p1k chr02 627 660 265161 265194 F 34 97.06 1312 reject_low 70 ALIGNMENT 0 Y12-3j22.p1k chr15 62 571 594818 594817 F 510 0.00 1312 reject_low 68 ALIGNMENT 0 Y12-3j22.p1k chr07 62 574 931691 931690 F 513 0.00 1312 reject_low 36 ALIGNMENT 24 Y12-3j22.p1k chr16 574 605 56408 56439 F 32 93.75 1312 reject_low 73 ALIGNMENT 0 Y12-3j22.p1k chr02 129 62 265464 265463 C 68 0.00 1312 reject_low 18 ALIGNMENT 23 Y12-3j22.p1k chr11 626 575 517375 517426 C 52 82.69 1312 reject_low 39 ALIGNMENT 23 Y12-3j22.p1k chr16 626 575 856499 856550 C 52 82.69 1312 reject_low 75 ALIGNMENT 0 Y12-3j22.p1k chr08 574 62 543942 543941 C 513 0.00 1312 reject_low 37 ALIGNMENT 0 Y12-3j22.p1k chr16 626 62 856551 856550 C 565 0.00 1312 reject_low 67 ALIGNMENT 0 Y12-3j22.p1k chr11 62 129 457812 457811 F 68 0.00 1312 reject_low 33 ALIGNMENT 80 Y12-3j22.p1k chr08 1262 993 543628 543912 C 270 80.37 1312 reject_low 63 ALIGNMENT 0 Y12-3j22.p1k chr16 886 816 850357 850356 C 71 0.00 1312 reject_low 75 ALIGNMENT 0 Y12-3j22.p1k chr16 324 886 850400 850399 F 563 0.00 1312 reject_low 31 ALIGNMENT 34 Y12-3j22.p1k chr14 130 315 102221 102406 F 186 75.27 1312 reject_low 78 ALIGNMENT 38 Y12-3j22.p1k chr16 660 703 56408 56451 F 44 97.73 1312 reject_low 76 ALIGNMENT 0 Y12-3j22.p1k chr02 627 886 265212 265211 F 260 0.00 1312 reject_low 34 ALIGNMENT 0 Y12-3j22.p1k chr16 62 626 849999 849998 F 565 0.00 1312 reject_low 66 ALIGNMENT 26 Y12-3j22.p1k chr14 627 656 102549 102578 F 30 96.67 1312 reject_low 77,78 ALIGNMENT 0 Y12-3j22.p1k chr16 661 992 850033 850027 F 332 0.00 1312 reject_low 66 ALIGNMENT 73 Y12-3j22.p1k chr07 993 1270 401991 402284 F 278 79.14 1312 reject_low 57 ALIGNMENT 31 Y12-3j22.p1k chr13 130 315 362615 362800 F 186 74.73 1312 reject_low 30 ALIGNMENT 270 Y12-3j22.p1k chr13 661 971 189752 190063 F 311 97.75 1312 reject_low 6 ALIGNMENT 0 Y12-3j22.p1k chr13 316 886 357218 357217 F 571 0.00 1312 reject_low 29 ALIGNMENT 0 Y12-3j22.p1k chr07 661 992 931725 931719 F 332 0.00 1312 reject_low 65 ALIGNMENT 37 Y12-3j22.p1k chr01 130 322 165856 166054 F 193 76.68 1312 reject_low 16 ALIGNMENT 31 Y12-3j22.p1k chr11 130 315 517124 517309 F 186 74.73 1312 reject_low 28 ALIGNMENT 0 Y12-3j22.p1k chr07 574 62 817730 817729 C 513 0.00 1312 reject_low 35 ALIGNMENT 31 Y12-3j22.p1k chr07 625 660 401960 401995 F 36 97.22 1312 reject_low 57 ALIGNMENT 0 Y12-3j22.p1k chr07 627 886 931742 931741 F 260 0.00 1312 reject_low 36 ALIGNMENT 0 Y12-3j22.p1k chr14 507 62 102701 102700 C 446 0.00 1312 reject_low 53,55,74 ALIGNMENT 80 Y12-3j22.p1k chr13 993 1262 189781 190065 F 270 80.37 1312 reject_low 64 ALIGNMENT 273 Y12-3j22.p1k chr07 971 661 817418 817729 C 311 98.07 1312 reject_low 50 ALIGNMENT 0 Y12-3j22.p1k chr15 886 316 600521 600520 C 571 0.00 1312 reject_low 24 ALIGNMENT 0 Y12-3j22.p1k chr14 886 627 96891 96890 C 260 0.00 1312 reject_low 42 ALIGNMENT 0 Y12-3j22.p1k chr07 572 62 823314 823313 C 511 0.00 1312 reject_low 69 ALIGNMENT 23 Y12-3j22.p1k chr13 626 575 357284 357335 C 52 82.69 1312 reject_low 41 ALIGNMENT 80 Y12-3j22.p1k chr14 1257 993 102216 102494 C 265 80.38 1312 reject_low 74 ALIGNMENT 0 Y12-3j22.p1k chr16 655 886 56479 56478 F 232 0.00 1312 reject_low 73 ALIGNMENT 0 Y12-3j22.p1k chr07 661 992 401996 401990 F 332 0.00 1312 reject_low 57 ALIGNMENT 29 Y12-3j22.p1k chr11 660 627 517393 517426 C 34 97.06 1312 reject_low 61 ALIGNMENT 0 Y12-3j22.p1k chr11 574 62 517427 517426 C 513 0.00 1312 reject_low 39 ALIGNMENT 0 Y12-3j22.p1k chr02 62 659 259575 259574 F 598 0.00 1312 reject_low 12 ALIGNMENT 23 Y12-3j22.p1k chr11 626 575 458063 458114 C 52 82.69 1312 reject_low 38 ALIGNMENT 0 Y12-3j22.p1k chr02 886 244 259765 259764 C 643 0.00 1312 reject_low 25 ALIGNMENT 23 Y12-3j22.p1k chr13 626 575 362866 362917 C 52 82.69 1312 reject_low 71 ALIGNMENT 83 Y12-3j22.p1k chr15 993 1262 600432 600716 F 270 80.74 1312 reject_low 14 ALIGNMENT 0 Y12-3j22.p1k chr14 316 574 102407 102548 F 259 0.00 1312 reject_low 78 ALIGNMENT 29 Y12-3j22.p1k chr16 627 660 849999 850032 F 34 97.06 1312 reject_low 66 ALIGNMENT 83 Y12-3j22.p1k chr13 1257 993 362610 362888 C 265 80.75 1312 reject_low 62 ALIGNMENT 0 Y12-3j22.p1k chr16 660 62 856551 856550 C 599 0.00 1312 reject_low 7 ALIGNMENT 36 Y12-3j22.p1k chr07 243 130 931879 931993 C 114 79.82 1312 reject_low 26 ALIGNMENT 0 Y12-3j22.p1k chr14 62 129 102221 102220 F 68 0.00 1312 reject_low 78 ALIGNMENT 23 Y12-3j22.p1k chr14 626 575 96890 96941 C 52 82.69 1312 reject_low 42 ALIGNMENT 0 Y12-3j22.p1k chr14 660 661 96942 102489 C 0 0.00 1312 reject_low 55 ALIGNMENT 83 Y12-3j22.p1k chr13 1257 993 357028 357306 C 265 80.75 1312 reject_low 10 ALIGNMENT 23 Y12-3j22.p1k chr14 626 575 102472 102523 C 52 82.69 1312 reject_low 72 ALIGNMENT 34 Y12-3j22.p1k chr07 130 315 823009 823194 F 186 75.27 1312 reject_low 20 ALIGNMENT 23 Y12-3j22.p1k chr16 627 657 56357 56387 F 31 93.55 1312 reject_low 76 ALIGNMENT 192 Y12-3j22.p1k chr01 990 657 165828 166167 C 334 88.02 1312 reject_low 56 ALIGNMENT 0 Y12-3j22.p1k chr14 660 578 102524 102630 C 83 0.00 1312 reject_low 53 ALIGNMENT 0 Y12-3j22.p1k chr07 659 62 823313 823312 C 598 0.00 1312 reject_low 13 ALIGNMENT 0 Y12-3j22.p1k chr11 660 62 458115 458114 C 599 0.00 1312 reject_low 4 ALIGNMENT 274 Y12-3j22.p1k chr15 660 971 594820 595132 F 312 98.08 1312 reject_low 14 ALIGNMENT 0 Y12-3j22.p1k chr07 886 661 817697 817696 C 226 0.00 1312 reject_low 69 ALIGNMENT 37 Y12-3j22.p1k chr01 130 322 160268 160466 F 193 76.68 1312 reject_low 15 ALIGNMENT 80 Y12-3j22.p1k chr14 1257 993 96634 96912 C 265 80.38 1312 reject_low 53 ALIGNMENT 0 Y12-3j22.p1k chr08 62 129 543639 543638 F 68 0.00 1312 reject_low 21 ALIGNMENT 0 Y12-3j22.p1k chr01 1012 62 166113 166112 C 951 0.00 1312 reject_low 47 ALIGNMENT 250 Y12-3j22.p1k chr16 990 661 856214 856550 C 330 93.94 1312 reject_low 7 ALIGNMENT 65 Y12-3j22.p1k chr16 993 1112 850028 850150 F 120 88.33 1312 reject_low 66 ALIGNMENT 0 Y12-3j22.p1k chr14 316 574 96825 102548 F 259 0.00 1312 reject_low 77 ALIGNMENT 87 Y12-3j22.p1k chr15 791 1262 594642 595134 F 472 76.27 1312 reject_low 11 ALIGNMENT 0 Y12-3j22.p1k chr07 129 62 931994 931993 C 68 0.00 1312 reject_low 26 ALIGNMENT 0 Y12-3j22.p1k chr13 886 627 357285 357284 C 260 0.00 1312 reject_low 41 ALIGNMENT 34 Y12-3j22.p1k chr14 130 315 96639 96824 F 186 75.27 1312 reject_low 77 ALIGNMENT 29 Y12-3j22.p1k chr16 660 627 856517 856550 C 34 97.06 1312 reject_low 67 ALIGNMENT 0 Y12-3j22.p1k chr15 129 62 595124 595123 C 68 0.00 1312 reject_low 23 ALIGNMENT 0 Y12-3j22.p1k chr07 62 659 401961 401960 F 598 0.00 1312 reject_low 2 ALIGNMENT 29 Y12-3j22.p1k chr08 660 627 543908 543941 C 34 97.06 1312 reject_low 63 ALIGNMENT 23 Y12-3j22.p1k chr02 575 626 265161 265212 F 52 82.69 1312 reject_low 34 ALIGNMENT 0 Y12-3j22.p1k chr15 62 574 600403 600402 F 513 0.00 1312 reject_low 43 ALIGNMENT 80 Y12-3j22.p1k chr02 993 1262 259605 259889 F 270 80.37 1312 reject_low 59 ALIGNMENT 28 Y12-3j22.p1k chr01 1112 1013 160425 160524 C 100 80.00 1312 reject_low 56 ALIGNMENT 29 Y12-3j22.p1k chr07 627 660 931691 931724 F 34 97.06 1312 reject_low 65 ALIGNMENT 0 Y12-3j22.p1k chr07 886 627 817679 817678 C 260 0.00 1312 reject_low 35 ALIGNMENT 83 Y12-3j22.p1k chr07 1262 993 817416 817700 C 270 80.74 1312 reject_low 13 ALIGNMENT 28 Y12-3j22.p1k chr01 1112 1013 166013 166112 C 100 80.00 1312 reject_low 47 ALIGNMENT 29 Y12-3j22.p1k chr13 627 660 189752 189785 F 34 97.06 1312 reject_low 64 ALIGNMENT 83 Y12-3j22.p1k chr11 1257 993 517119 517397 C 265 80.75 1312 reject_low 61 ALIGNMENT 83 Y12-3j22.p1k chr11 1257 993 457807 458085 C 265 81.13 1312 reject_low 60 ALIGNMENT 0 Y12-3j22.p1k chr13 62 574 189752 189751 F 513 0.00 1312 reject_low 40 ALIGNMENT 0 Y12-3j22.p1k chr15 886 316 594939 594938 C 571 0.00 1312 reject_low 23 ALIGNMENT 29 Y12-3j22.p1k chr11 660 627 458081 458114 C 34 97.06 1312 reject_low 60 ALIGNMENT 20 Y12-3j22.p1k chr14 575 598 102549 102572 F 24 95.83 1312 reject_low 77,78 ALIGNMENT 0 Y12-3j22.p1k chr11 189 886 457870 457869 F 698 0.00 1312 reject_low 33 ALIGNMENT 65 Y12-3j22.p1k chr16 1112 993 856399 856521 C 120 88.33 1312 reject_low 67 ALIGNMENT 31 Y12-3j22.p1k chr02 624 660 259573 259609 F 37 97.30 1312 reject_low 52,59 ALIGNMENT 0 Y12-3j22.p1k chr13 626 62 362918 362917 C 565 0.00 1312 reject_low 45,62 ALIGNMENT 285 Y12-3j22.p1k chr14 990 661 96611 96941 C 330 97.27 1312 reject_low 55 ALIGNMENT 0 Y12-3j22.p1k chr14 992 991 96913 102192 C 2 0.00 1312 reject_low 53 ALIGNMENT 29 Y12-3j22.p1k chr14 660 627 102490 102523 C 34 97.06 1312 reject_low 55,74 ALIGNMENT 49 Y12-3j22.p1k chr07 857 968 817278 817387 F 112 83.93 1312 reject_low 46 ALIGNMENT 24 Y12-3j22.p1k chr02 574 626 259575 259627 F 53 83.02 1312 reject_low 70 ALIGNMENT 0 Y12-3j22.p1k chr13 316 886 362800 362799 F 571 0.00 1312 reject_low 30 ALIGNMENT 0 Y12-3j22.p1k chr11 992 661 458086 458080 C 332 0.00 1312 reject_low 60 ALIGNMENT 0 Y12-3j22.p1k chr16 704 1012 56452 56502 F 309 0.00 1312 reject_low 76 ALIGNMENT 342 Y12-3j22.p1k chr16 327 851 56110 56648 F 525 90.10 1312|8,0 accept_trans 0 ALIGNMENT 0 Y12-3j22.p1k chr02 62 574 265161 265160 F 513 0.00 1312 reject_low 34 ALIGNMENT 86 Y12-3j22.p1k chr02 993 1262 265190 265474 F 270 81.11 1312 reject_low 12 ALIGNMENT 0 Y12-3j22.p1k chr13 992 661 362889 362883 C 332 0.00 1312 reject_low 62 ALIGNMENT 29 Y12-3j22.p1k chr13 660 627 357302 357335 C 34 97.06 1312 reject_low 71 ALIGNMENT 0 Y12-3j22.p1k chr16 335 334 55871 56117 F 0 0.00 1312 accept_trans 0 ALIGNMENT 0 Y12-3j22.p1k chr16 574 62 856551 856550 C 513 0.00 1312 reject_low 75 ALIGNMENT 0 Y12-3j22.p1k chr07 62 660 931691 931690 F 599 0.00 1312 reject_low 3 ALIGNMENT 24 Y12-3j22.p1k chr07 574 626 401961 402013 F 53 83.02 1312 reject_low 32 ALIGNMENT 0 Y12-3j22.p1k chr16 62 275 850354 850353 F 214 0.00 1312 reject_low 31 ALIGNMENT 244 Y12-3j22.p1k chr16 661 971 849999 850316 F 311 95.18 1312 reject_low 8 ALIGNMENT 20 Y12-3j22.p1k chr16 661 712 56357 56408 F 52 82.69 1312 reject_low 54 ALIGNMENT 50 Y12-3j22.p1k chr16 518 573 856551 856606 F 56 98.21 1312 reject_low 48 ALIGNMENT 0 Y12-3j22.p1k chr02 661 886 265194 265193 F 226 0.00 1312 reject_low 70 ALIGNMENT 0 Y12-3j22.p1k chr07 886 244 931880 931879 C 643 0.00 1312 reject_low 26 ALIGNMENT 0 Y12-3j22.p1k chr07 316 886 817612 817611 F 571 0.00 1312 reject_low 19 ALIGNMENT 0 Y12-3j22.p1k chr14 574 62 102524 102523 C 513 0.00 1312 reject_low 72 ALIGNMENT 23 Y12-3j22.p1k chr07 626 575 817678 817729 C 52 82.69 1312 reject_low 35 ALIGNMENT 29 Y12-3j22.p1k chr15 627 660 600403 600436 F 34 97.06 1312 reject_low 68 ALIGNMENT 0 Y12-3j22.p1k chr16 992 661 856522 856516 C 332 0.00 1312 reject_low 67 ALIGNMENT 0 Y12-3j22.p1k chr13 62 129 362615 362614 F 68 0.00 1312 reject_low 30 ALIGNMENT 288 Y12-3j22.p1k chr11 990 661 517096 517426 C 330 97.58 1312 reject_low 1 ALIGNMENT 271 Y12-3j22.p1k chr02 660 971 259575 259887 F 312 97.76 1312 reject_low 12 ALIGNMENT 0 Y12-3j22.p1k chr16 606 624 56440 56449 F 19 0.00 1312 reject_low 73 ALIGNMENT 0 Y12-3j22.p1k chr13 62 660 189752 189751 F 599 0.00 1312 reject_low 6 ALIGNMENT 0 Y12-3j22.p1k chr02 627 626 259628 265160 F 0 0.00 1312 reject_low 70 ALIGNMENT 23 Y12-3j22.p1k chr13 575 626 189752 189803 F 52 82.69 1312 reject_low 40 ALIGNMENT 0 Y12-3j22.p1k chr07 316 886 823194 823193 F 571 0.00 1312 reject_low 20 ALIGNMENT 0 Y12-3j22.p1k chr11 886 627 458064 458063 C 260 0.00 1312 reject_low 38 ALIGNMENT 0 Y12-3j22.p1k chr14 657 660 102579 102548 F 4 0.00 1312 reject_low 77,78 ALIGNMENT 0 Y12-3j22.p1k chr07 992 661 823283 823277 C 332 0.00 1312 reject_low 58 ALIGNMENT 0 Y12-3j22.p1k chr13 660 661 357336 362883 C 0 0.00 1312 reject_low 45 ALIGNMENT 38 Y12-3j22.p1k chr16 315 130 850116 850307 C 186 76.88 1312 reject_low 17 ALIGNMENT 0 Y12-3j22.p1k chr16 886 316 850117 850116 C 571 0.00 1312 reject_low 17 ALIGNMENT 0 Y12-3j22.p1k chr16 62 129 856242 856241 F 68 0.00 1312 reject_low 48 ALIGNMENT 0 Y12-3j22.p1k chr11 316 886 517309 517308 F 571 0.00 1312 reject_low 28 ALIGNMENT 0 Y12-3j22.p1k chr01 62 129 165856 165855 F 68 0.00 1312 reject_low 16 ALIGNMENT 0 Y12-3j22.p1k chr11 62 129 517124 517123 F 68 0.00 1312 reject_low 28 ALIGNMENT 275 Y12-3j22.p1k chr07 660 994 401961 402296 F 335 95.82 1312 reject_low 2 ALIGNMENT 77 Y12-3j22.p1k chr07 993 1257 931720 931998 F 265 80.00 1312 reject_low 65 ALIGNMENT 0 Y12-3j22.p1k chr15 661 886 600436 600435 F 226 0.00 1312 reject_low 68 ALIGNMENT 29 Y12-3j22.p1k chr14 661 690 102549 102578 F 30 100.00 1312 reject_low 77,78 ALIGNMENT 0 Y12-3j22.p1k chr13 886 661 357303 357302 C 226 0.00 1312 reject_low 71 ALIGNMENT 0 Y12-3j22.p1k chr08 992 661 543913 543907 C 332 0.00 1312 reject_low 63 ALIGNMENT 0 Y12-3j22.p1k chr15 62 659 594820 594819 F 598 0.00 1312 reject_low 14 ALIGNMENT 29 Y12-3j22.p1k chr07 660 627 817696 817729 C 34 97.06 1312 reject_low 69 ALIGNMENT 0 Y12-3j22.p1k chr02 62 623 259573 259572 F 562 0.00 1312 reject_low 52,59 ALIGNMENT 0 Y12-3j22.p1k chr15 129 62 600706 600705 C 68 0.00 1312 reject_low 24 ALIGNMENT 0 Y12-3j22.p1k chr15 627 626 594873 600402 F 0 0.00 1312 reject_low 68 ALIGNMENT 0 Y12-3j22.p1k chr16 574 886 856606 856605 F 313 0.00 1312 reject_low 48 ALIGNMENT 0 Y12-3j22.p1k chr16 847 62 55780 55779 C 786 0.00 1312 reject_low 49 ALIGNMENT 0 Y12-3j22.p1k chr01 323 886 166054 166053 F 564 0.00 1312 reject_low 16 ALIGNMENT 285 Y12-3j22.p1k chr14 990 661 102193 102523 C 330 97.27 1312 reject_low 53 ALIGNMENT 22 Y12-3j22.p1k chr16 276 323 850354 850400 F 48 87.50 1312 reject_low 31 ALIGNMENT 0 Y12-3j22.p1k chr01 62 129 160268 160267 F 68 0.00 1312 reject_low 15 ALIGNMENT 0 Y12-3j22.p1k chr14 886 661 96909 96908 C 226 0.00 1312 reject_low 72 ALIGNMENT 38 Y12-3j22.p1k chr16 130 315 856242 856433 F 186 76.88 1312 reject_low 48 ALIGNMENT 26 Y12-3j22.p1k chr16 815 778 850356 850392 C 38 94.74 1312 reject_low 75 ALIGNMENT 0 Y12-3j22.p1k chr16 62 626 56357 56356 F 565 0.00 1312 reject_low 76 ALIGNMENT 0 Y12-3j22.p1k chr16 62 660 56357 56356 F 599 0.00 1312 reject_low 54 ALIGNMENT 0 Y12-3j22.p1k chr01 656 62 166168 166167 C 595 0.00 1312 reject_low 56 ALIGNMENT 0 Y12-3j22.p1k chr16 316 517 856434 856550 F 202 0.00 1312 reject_low 48 ALIGNMENT 31 Y12-3j22.p1k chr13 130 315 357033 357218 F 186 74.73 1312 reject_low 29 ALIGNMENT 0 Y12-3j22.p1k chr13 574 62 362918 362917 C 513 0.00 1312 reject_low 71 ALIGNMENT 0 Y12-3j22.p1k chr07 626 627 817730 823259 C 0 0.00 1312 reject_low 69 ALIGNMENT 0 Y12-3j22.p1k chr07 992 972 817701 822999 C 21 0.00 1312 reject_low 13 ALIGNMENT 0 Y12-3j22.p1k chr14 626 578 102524 102630 C 49 0.00 1312 reject_low 55,74 ALIGNMENT 0 Y12-3j22.p1k chr13 626 627 357336 362865 C 0 0.00 1312 reject_low 71 ALIGNMENT 0 Y12-3j22.p1k chr11 626 62 517427 517426 C 565 0.00 1312 reject_low 61 ALIGNMENT 0 Y12-3j22.p1k chr08 660 62 543942 543941 C 599 0.00 1312 reject_low 5 ALIGNMENT 0 Y12-3j22.p1k chr15 661 660 594855 600402 F 0 0.00 1312 reject_low 51 ALIGNMENT 0 Y12-3j22.p1k chr07 625 62 823313 823312 C 564 0.00 1312 reject_low 50,58 ALIGNMENT 270 Y12-3j22.p1k chr08 971 661 543630 543941 C 311 97.75 1312 reject_low 5 ALIGNMENT 0 Y12-3j22.p1k chr13 660 62 362918 362917 C 599 0.00 1312 reject_low 10 ALIGNMENT 0 Y12-3j22.p1k chr15 627 886 600454 600453 F 260 0.00 1312 reject_low 43 ALIGNMENT 31 Y12-3j22.p1k chr07 315 130 402079 402264 C 186 74.73 1312 reject_low 27 ALIGNMENT 0 Y12-3j22.p1k chr07 62 129 823009 823008 F 68 0.00 1312 reject_low 20 ALIGNMENT 0 Y12-3j22.p1k chr13 129 62 190055 190054 C 68 0.00 1312 reject_low 22 ALIGNMENT 0 Y12-3j22.p1k chr01 660 62 160576 160575 C 599 0.00 1312 reject_low 9 ALIGNMENT 23 Y12-3j22.p1k chr07 575 626 931691 931742 F 52 82.69 1312 reject_low 36 ALIGNMENT 0 Y12-3j22.p1k chr15 62 625 594820 594819 F 564 0.00 1312 reject_low 51 ALIGNMENT 0 Y12-3j22.p1k chr07 62 624 401960 401959 F 563 0.00 1312 reject_low 57 ALIGNMENT 0 Y12-3j22.p1k chr13 62 626 189752 189751 F 565 0.00 1312 reject_low 64 ALIGNMENT 0 Y12-3j22.p1k chr14 574 62 96942 96941 C 513 0.00 1312 reject_low 42 ALIGNMENT 270 Y12-3j22.p1k chr11 990 661 457784 458114 C 330 95.76 1312 reject_low 4 ALIGNMENT 0 Y12-3j22.p1k chr08 626 62 543942 543941 C 565 0.00 1312 reject_low 63 ALIGNMENT 0 Y12-3j22.p1k chr14 691 886 102578 102577 F 196 0.00 1312 reject_low 77,78 ALIGNMENT 0 Y12-3j22.p1k chr16 627 886 850050 850049 F 260 0.00 1312 reject_low 44 ALIGNMENT 0 Y12-3j22.p1k chr13 627 886 189803 189802 F 260 0.00 1312 reject_low 40 ALIGNMENT 0 Y12-3j22.p1k chr16 62 660 849999 849998 F 599 0.00 1312 reject_low 8 ALIGNMENT 1011 Y12-3j22.q1k chr16 1216 36 64653 65846 C 1181 96.70 1349 accept_trans 0 ALIGNMENT 0 Y12-3j22.p1k chr15 972 992 595133 600431 F 21 0.00 1312 reject_low 14 ALIGNMENT 0 Y12-3j22.p1k chr15 62 790 594642 594641 F 729 0.00 1312 reject_low 11 ALIGNMENT 0 Y12-3j22.p1k chr11 626 62 458115 458114 C 565 0.00 1312 reject_low 60 ALIGNMENT 270 Y12-3j22.p1k chr02 661 971 265161 265472 F 311 97.75 1312 reject_low 52 ALIGNMENT 287 Y12-3j22.p1k chr16 20 342 55553 55878 F 323 98.45 1312|0,8 accept_trans 0 ALIGNMENT 0 Y12-3j22.p1k chr13 574 62 357336 357335 C 513 0.00 1312 reject_low 41 ALIGNMENT 0 Y12-3j22.p1k chr13 992 991 357307 362586 C 2 0.00 1312 reject_low 10 ALIGNMENT 0 Y12-3j22.p1k chr07 129 62 402265 402264 C 68 0.00 1312 reject_low 27 ALIGNMENT 23 Y12-3j22.p1k chr15 575 626 600403 600454 F 52 82.69 1312 reject_low 43 ALIGNMENT 276 Y12-3j22.p1k chr07 661 990 931691 932021 F 330 96.36 1312 reject_low 3 ALIGNMENT 0 Y12-3j22.p1k chr14 599 626 102573 102548 F 28 0.00 1312 reject_low 77,78 ALIGNMENT 0 Y12-3j22.p1k chr07 62 626 931691 931690 F 565 0.00 1312 reject_low 65 ALIGNMENT 288 Y12-3j22.p1k chr13 990 661 357005 357335 C 330 97.58 1312 reject_low 45 ALIGNMENT 0 Y12-3j22.p1k chr16 777 627 850393 856498 C 151 0.00 1312 reject_low 75 ALIGNMENT 0 Y12-3j22.p1k chr11 886 627 517376 517375 C 260 0.00 1312 reject_low 39 ALIGNMENT 0 Y12-3j22.p1k chr16 129 62 850308 850307 C 68 0.00 1312 reject_low 17 ALIGNMENT 34 Y12-3j22.p1k chr08 130 315 543639 543824 F 186 75.27 1312 reject_low 21 ALIGNMENT 0 Y12-3j22.p1k chr11 574 62 458115 458114 C 513 0.00 1312 reject_low 38 ALIGNMENT 0 Y12-3j22.p1k chr02 129 62 259879 259878 C 68 0.00 1312 reject_low 25 ALIGNMENT 274 Y12-3j22.p1k chr07 971 660 823000 823312 C 312 98.08 1312 reject_low 13 ALIGNMENT 273 Y12-3j22.p1k chr15 661 971 600403 600714 F 311 98.07 1312 reject_low 51 ALIGNMENT 0 Y12-3j22.p1k chr02 62 573 259575 259574 F 512 0.00 1312 reject_low 70 ALIGNMENT 288 Y12-3j22.p1k chr13 990 661 362587 362917 C 330 97.58 1312 reject_low 10 ALIGNMENT 83 Y12-3j22.p1k chr07 1262 993 822998 823282 C 270 80.74 1312 reject_low 58 ALIGNMENT 0 Y12-3j22.p1k chr11 660 62 517427 517426 C 599 0.00 1312 reject_low 1 ALIGNMENT 0 Y12-3j22.p1k chr08 316 886 543824 543823 F 571 0.00 1312 reject_low 21 ALIGNMENT 0 Y12-3j22.p1k chr16 852 886 56648 56647 F 35 0.00 1312 accept_trans 0 ALIGNMENT 34 Y12-3j22.p1k chr15 315 130 600520 600705 C 186 75.27 1312 reject_low 24 ALIGNMENT 34 Y12-3j22.p1k chr13 315 130 189869 190054 C 186 75.27 1312 reject_low 22 ALIGNMENT 0 Y12-3j22.p1k chr07 62 856 817278 817277 F 795 0.00 1312 reject_low 46 ALIGNMENT 28 Y12-3j22.p1k chr16 1013 1112 56503 56602 F 100 80.00 1312 reject_low 76 ALIGNMENT 0 Y12-3j22.p1k chr07 627 886 402013 402012 F 260 0.00 1312 reject_low 32 ALIGNMENT 27 Y12-3j22.p1k chr11 130 188 457812 457870 F 59 84.75 1312 reject_low 33 ALIGNMENT 0 Y12-3j22.p1k chr16 658 659 56388 56407 F 2 0.00 1312 reject_low 76 ALIGNMENT 0 Y12-3j22.p1k chr02 972 992 259888 265189 F 21 0.00 1312 reject_low 12 ALIGNMENT 23 Y12-3j22.p1k chr08 626 575 543890 543941 C 52 82.69 1312 reject_low 37 ALIGNMENT 0 Y12-3j22.p1k chr01 1012 991 160525 165827 C 22 0.00 1312 reject_low 56 ALIGNMENT 0 Y12-3j22.p1k chr02 886 316 265279 265278 C 571 0.00 1312 reject_low 18 ALIGNMENT 0 Y12-3j22.p1k chr16 62 574 849999 849998 F 513 0.00 1312 reject_low 44 ALIGNMENT 0 Y12-3j22.p1k chr01 323 886 160466 160465 F 564 0.00 1312 reject_low 15 ALIGNMENT 0 Y12-3j22.p1k chr14 626 627 96942 102471 C 0 0.00 1312 reject_low 72 ALIGNMENT 34 Y12-3j22.p1k chr15 315 130 594938 595123 C 186 75.27 1312 reject_low 23 ALIGNMENT 29 Y12-3j22.p1k chr13 660 627 362884 362917 C 34 97.06 1312 reject_low 45,62 ALIGNMENT 0 Y12-3j22.p1k chr02 661 992 259610 259604 F 332 0.00 1312 reject_low 59 ALIGNMENT 0 Y12-3j22.p1k chr13 661 992 189786 189780 F 332 0.00 1312 reject_low 64 ALIGNMENT 0 Y12-3j22.p1k chr07 660 661 817730 823277 C 0 0.00 1312 reject_low 50 ALIGNMENT 30 Y12-3j22.p1k chr07 660 626 823278 823312 C 35 97.14 1312 reject_low 50,58 ALIGNMENT 0 Y12-3j22.p1k chr13 886 316 189870 189869 C 571 0.00 1312 reject_low 22 ALIGNMENT 36 Y12-3j22.p1k chr02 243 130 259764 259878 C 114 79.82 1312 reject_low 25 ALIGNMENT 0 Y12-3j22.p1k chr11 992 661 517398 517392 C 332 0.00 1312 reject_low 61 ALIGNMENT 22 Y12-3j22.p1k chr16 625 654 56450 56479 F 30 93.33 1312 reject_low 73 ALIGNMENT 0 Y12-3j22.p1k chr16 62 573 56408 56407 F 512 0.00 1312 reject_low 73 ALIGNMENT 0 Y12-3j22.p1k chr02 661 660 259610 265160 F 0 0.00 1312 reject_low 52 ALIGNMENT 0 Y12-3j22.p1k chr16 713 886 56408 56407 F 174 0.00 1312 reject_low 54 ALIGNMENT 0 Y12-3j22.p1k chr14 62 129 96639 96638 F 68 0.00 1312 reject_low 77 ALIGNMENT 0 Y12-3j22.p1k chr08 886 627 543891 543890 C 260 0.00 1312 reject_low 37 ALIGNMENT 0 Y12-3j22.p1k chr07 62 573 401961 401960 F 512 0.00 1312 reject_low 32 ALIGNMENT 23 Y12-3j22.p1k chr16 575 626 849999 850050 F 52 82.69 1312 reject_low 44 ALIGNMENT 0 Y12-3j22.p1k chr07 886 316 402080 402079 C 571 0.00 1312 reject_low 27 ALIGNMENT 0 Y12-3j22.p1k chr13 62 129 357033 357032 F 68 0.00 1312 reject_low 29 ALIGNMENT 0 Y12-3j22.p1k chr14 992 661 102495 102489 C 332 0.00 1312 reject_low 74 ALIGNMENT 627 Y12-3j24.p1k chr08 519 1365 476972 477823 F 847 92.56 1431 accept 0 ALIGNMENT 912 Y12-3j24.q1k chr08 1153 40 480882 482001 C 1114 95.15 1307 accept 0 ALIGNMENT 656 Y12-3k01.p1k chr04 257 1061 822966 823786 F 805 96.02 1410 accept 0 ALIGNMENT 971 Y12-3k01.q1k chr04 1191 35 827989 829156 C 1157 95.85 1358 accept 0 ALIGNMENT 0 Y12-3k02.q1k chr01 312 834 12552 13254 F 523 0.00 1359 reject_low 29 ALIGNMENT 93 Y12-3k02.q1k chr08 929 684 526907 527150 C 246 80.89 1359 reject_low 16 ALIGNMENT 0 Y12-3k02.q1k chr01 790 820 25912 25942 F 31 0.00 1359 reject_low 34 ALIGNMENT 84 Y12-3k02.q1k chr01 192 311 12576 12695 F 120 90.83 1359 reject_low 28 ALIGNMENT 0 Y12-3k02.q1k chr08 685 62 526339 526338 C 624 0.00 1359 reject_low 22 ALIGNMENT 77 Y12-3k02.q1k chr01 686 915 25538 25764 F 230 79.57 1359 reject_low 30 ALIGNMENT 52 Y12-3k02.q1k chr01 678 915 25935 26169 F 238 76.05 1359 reject_low 32 ALIGNMENT 0 Y12-3k02.q1k chr01 62 181 12662 12661 F 120 0.00 1359 reject_low 27 ALIGNMENT 0 Y12-3k02.q1k chr01 312 834 12600 13254 F 523 0.00 1359 reject_low 6 ALIGNMENT 0 Y12-3k02.q1k chr08 534 62 539832 539831 C 473 0.00 1359 reject_low 7 ALIGNMENT 0 Y12-3k02.q1k chr01 62 277 24923 24922 F 216 0.00 1359 reject_low 30,31,32,33,34 ALIGNMENT 397 Y12-3k02.q1k chr08 1003 240 526967 527714 C 764 86.78 1359 reject_low 2 ALIGNMENT 0 Y12-3k02.q1k chr01 239 62 207070 207069 C 178 0.00 1359 ambiguous_tel 0 ALIGNMENT 117 Y12-3k02.q1k chr08 1003 686 526562 526878 C 318 80.50 1359 reject_low 4 ALIGNMENT 85 Y12-3k02.q1k chr01 929 686 205989 206230 C 244 79.92 1359 reject_low 17 ALIGNMENT 394 Y12-3k02.q1k chr01 35 966 24776 25681 F 932 84.33 1359 ambiguous_tel 1 ALIGNMENT 0 Y12-3k02.q1k chr01 685 62 206501 206500 C 624 0.00 1359 reject_low 19 ALIGNMENT 0 Y12-3k02.q1k chr01 62 181 12614 12613 F 120 0.00 1359 reject_low 26 ALIGNMENT 0 Y12-3k02.q1k chr01 379 62 219316 219315 C 318 0.00 1359 reject_low 23 ALIGNMENT 0 Y12-3k02.q1k chr01 312 685 24957 25537 F 374 0.00 1359 reject_low 30 ALIGNMENT 98 Y12-3k02.q1k chr01 512 380 219183 219315 C 133 93.98 1359 reject_low 23 ALIGNMENT 0 Y12-3k02.q1k chr01 820 513 219070 219182 C 308 0.00 1359 reject_low 23 ALIGNMENT 0 Y12-3k02.q1k chr08 683 62 527151 527150 C 622 0.00 1359 reject_low 16 ALIGNMENT 105 Y12-3k02.q1k chr08 1003 684 526427 526745 C 320 79.06 1359 reject_low 12 ALIGNMENT 0 Y12-3k02.q1k chr01 677 62 205564 205563 C 616 0.00 1359 reject_low 21 ALIGNMENT 26 Y12-3k02.q1k chr08 721 686 526303 526338 C 36 91.67 1359 reject_low 22 ALIGNMENT 92 Y12-3k02.q1k chr01 182 311 12614 12743 F 130 91.54 1359 reject_low 26 ALIGNMENT 20 Y12-3k02.q1k chr01 278 311 24923 24956 F 34 88.24 1359 reject_low 30,31,32,33,34 ALIGNMENT 93 Y12-3k02.q1k chr08 932 684 526364 526610 C 249 80.72 1359 reject_low 15 ALIGNMENT 0 Y12-3k02.q1k chr01 312 834 12744 13254 F 523 0.00 1359 reject_low 26 ALIGNMENT 127 Y12-3k02.q1k chr01 966 686 205682 205960 C 281 83.63 1359 reject_low 5 ALIGNMENT 26 Y12-3k02.q1k chr01 835 868 13255 13287 F 34 94.12 1359 reject_low 6,25,26,27,28,29 ALIGNMENT 27 Y12-3k02.q1k chr01 821 915 25943 26034 F 95 80.00 1359 reject_low 34 ALIGNMENT 33 Y12-3k02.q1k chr08 879 821 539624 539680 C 59 88.14 1359 reject_low 24 ALIGNMENT 50 Y12-3k02.q1k chr01 240 311 12480 12551 F 72 91.67 1359 reject_low 29 ALIGNMENT 95 Y12-3k02.q1k chr08 512 380 539794 539926 C 133 93.23 1359 reject_low 24 ALIGNMENT 0 Y12-3k02.q1k chr01 685 62 206231 206230 C 624 0.00 1359 reject_low 17 ALIGNMENT 0 Y12-3k02.q1k chr01 685 62 205826 205825 C 624 0.00 1359 reject_low 18 ALIGNMENT 64 Y12-3k02.q1k chr08 865 684 526835 527015 C 182 79.12 1359 reject_low 20 ALIGNMENT 116 Y12-3k02.q1k chr08 723 535 539643 539831 C 189 88.89 1359 reject_low 7 ALIGNMENT 0 Y12-3k02.q1k chr01 312 834 12648 13254 F 523 0.00 1359 reject_low 25 ALIGNMENT 0 Y12-3k02.q1k chr01 312 677 24957 26069 F 366 0.00 1359 reject_low 31 ALIGNMENT 92 Y12-3k02.q1k chr01 182 311 12662 12791 F 130 91.54 1359 reject_low 27 ALIGNMENT 104 Y12-3k02.q1k chr08 1003 701 526697 526998 C 303 79.87 1359 reject_low 11 ALIGNMENT 135 Y12-3k02.q1k chr01 786 535 218969 219220 C 252 85.71 1359 reject_low 8 ALIGNMENT 55 Y12-3k02.q1k chr01 678 915 26070 26304 F 238 76.47 1359 reject_low 31 ALIGNMENT 0 Y12-3k02.q1k chr01 62 177 12514 12513 F 116 0.00 1359 reject_low 25 ALIGNMENT 476 Y12-3k02.q1k chr01 929 240 206394 207069 C 690 92.17 1359 ambiguous_tel 0 ALIGNMENT 0 Y12-3k02.q1k chr08 379 62 539927 539926 C 318 0.00 1359 reject_low 24 ALIGNMENT 315 Y12-3k02.q1k chr01 182 771 12710 13326 F 590 86.44 1359 reject_low 3 ALIGNMENT 0 Y12-3k02.q1k chr08 683 62 526746 526745 C 622 0.00 1359 reject_low 12 ALIGNMENT 0 Y12-3k02.q1k chr01 62 181 12710 12709 F 120 0.00 1359 reject_low 3 ALIGNMENT 96 Y12-3k02.q1k chr08 1015 755 526416 526674 C 261 80.84 1359 reject_low 10 ALIGNMENT 196 Y12-3k02.q1k chr01 263 38 206998 207223 C 226 96.02 1359 reject_low 5 ALIGNMENT 0 Y12-3k02.q1k chr01 312 834 12696 13254 F 523 0.00 1359 reject_low 28 ALIGNMENT 94 Y12-3k02.q1k chr01 966 686 206087 206365 C 281 79.72 1359 reject_low 14 ALIGNMENT 0 Y12-3k02.q1k chr08 683 62 526611 526610 C 622 0.00 1359 reject_low 15 ALIGNMENT 77 Y12-3k02.q1k chr01 915 686 205599 205825 C 230 79.57 1359 reject_low 18 ALIGNMENT 0 Y12-3k02.q1k chr01 312 677 24957 26204 F 366 0.00 1359 reject_low 33 ALIGNMENT 0 Y12-3k02.q1k chr08 754 62 526675 526674 C 693 0.00 1359 reject_low 10 ALIGNMENT 0 Y12-3k02.q1k chr01 534 62 219221 219220 C 473 0.00 1359 reject_low 8 ALIGNMENT 0 Y12-3k02.q1k chr01 685 62 206366 206365 C 624 0.00 1359 reject_low 14 ALIGNMENT 97 Y12-3k02.q1k chr01 178 311 12514 12647 F 134 91.79 1359 reject_low 25 ALIGNMENT 0 Y12-3k02.q1k chr08 685 264 526879 527642 C 422 0.00 1359 reject_low 4 ALIGNMENT 102 Y12-3k02.q1k chr01 1028 684 205754 206097 C 345 78.84 1359 reject_low 9 ALIGNMENT 0 Y12-3k02.q1k chr08 239 62 527715 527714 C 178 0.00 1359 reject_low 2 ALIGNMENT 0 Y12-3k02.q1k chr01 683 62 206098 206097 C 622 0.00 1359 reject_low 9 ALIGNMENT 233 Y12-3k02.q1k chr01 35 311 12323 12599 F 277 95.31 1359 reject_low 6 ALIGNMENT 0 Y12-3k02.q1k chr08 820 513 539681 539793 C 308 0.00 1359 reject_low 24 ALIGNMENT 0 Y12-3k02.q1k chr08 683 62 527016 527015 C 622 0.00 1359 reject_low 20 ALIGNMENT 27 Y12-3k02.q1k chr01 759 678 205482 205563 C 82 78.05 1359 reject_low 21 ALIGNMENT 51 Y12-3k02.q1k chr01 678 789 26205 26316 F 112 82.14 1359 reject_low 33 ALIGNMENT 50 Y12-3k02.q1k chr01 935 821 218957 219069 C 115 84.35 1359 reject_low 23 ALIGNMENT 0 Y12-3k02.q1k chr08 700 62 526999 526998 C 639 0.00 1359 reject_low 11 ALIGNMENT 201 Y12-3k02.q1k chr08 263 35 527643 527871 C 229 96.51 1359 reject_low 4 ALIGNMENT 0 Y12-3k02.q1k chr01 685 264 205961 206997 C 422 0.00 1359 reject_low 5 ALIGNMENT 69 Y12-3k02.q1k chr08 1003 819 527102 527285 C 185 81.62 1359 reject_low 13 ALIGNMENT 0 Y12-3k02.q1k chr01 62 191 12576 12575 F 130 0.00 1359 reject_low 28 ALIGNMENT 75 Y12-3k02.q1k chr01 865 686 206322 206500 C 180 81.11 1359 reject_low 19 ALIGNMENT 0 Y12-3k02.q1k chr01 312 677 24957 25934 F 366 0.00 1359 reject_low 32 ALIGNMENT 45 Y12-3k02.q1k chr01 678 789 25800 25911 F 112 80.36 1359 reject_low 34 ALIGNMENT 0 Y12-3k02.q1k chr08 818 62 527286 527285 C 757 0.00 1359 reject_low 13 ALIGNMENT 0 Y12-3k02.q1k chr01 62 239 12480 12479 F 178 0.00 1359 reject_low 29 ALIGNMENT 0 Y12-3k02.q1k chr01 312 677 24957 25799 F 366 0.00 1359 reject_low 34 ALIGNMENT 0 Y12-3k02.q1k chr01 312 834 12792 13254 F 523 0.00 1359 reject_low 27 ALIGNMENT 739 Y12-3k04.p1k chr14 1200 251 621367 622329 C 950 94.42 1330 accept 0 ALIGNMENT 897 Y12-3k04.q1k chr14 40 1217 618538 619688 F 1178 94.06 1374 accept 0 ALIGNMENT 382 Y12-3k06.p1k chr01 854 321 45117 45651 C 534 91.20 1418 accept 0 ALIGNMENT 838 Y12-3k06.q1k chr01 31 1124 41402 42496 F 1094 93.60 1401 accept 0 ALIGNMENT 21 Y12-3k07.q1k chr05 61 111 402504 402554 F 51 80.39 1427 accept 0 ALIGNMENT 254 Y12-3k07.q1k chr05 147 946 402590 403385 F 800 78.50 1427 accept 0 ALIGNMENT 0 Y12-3k07.q1k chr05 112 146 402555 402589 F 35 0.00 1427 accept 0 ALIGNMENT 931 Y12-3k08.q1k chr08 39 1079 43148 44195 F 1041 97.31 1342 accept 0 ALIGNMENT 967 Y12-3k08.p1k chr08 1191 20 47664 48846 C 1172 94.97 1395 accept 0 ALIGNMENT 491 Y12-3k09.p1k chr08 272 1139 280428 281293 F 868 86.75 1514 accept 0 ALIGNMENT 876 Y12-3k09.q1k chr08 1150 38 283765 284883 C 1113 94.88 1394 accept 0 ALIGNMENT 0 Y12-3k10.p1k chr12 62 500 472464 472463 F 439 0.00 1339 reject_low 5 ALIGNMENT 0 Y12-3k10.p1k chr12 1012 1011 460203 460218 F 0 0.00 1339 reject_bad_break 0 ALIGNMENT 978 Y12-3k10.q1k chr12 1131 40 463566 464663 C 1092 97.25 1375 reject_bad_break 0 ALIGNMENT 0 Y12-3k10.p1k chr12 62 500 489348 489347 F 439 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-3k10.p1k chr12 635 782 489481 489480 F 148 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-3k10.p1k chr06 133 62 31730 31729 C 72 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-3k10.p1k chr12 620 782 485814 485813 F 163 0.00 1339 reject_low 7 ALIGNMENT 0 Y12-3k10.p1k chr12 620 782 482162 482161 F 163 0.00 1339 reject_low 6 ALIGNMENT 0 Y12-3k10.p1k chr12 620 782 468930 468929 F 163 0.00 1339 reject_low 2 ALIGNMENT 865 Y12-3k10.p1k chr12 21 1011 459194 460202 F 991 97.28 1339 reject_bad_break 0 ALIGNMENT 574 Y12-3k10.p1k chr12 21 619 468331 468930 F 599 99.67 1339 reject_low 2 ALIGNMENT 0 Y12-3k10.p1k chr12 62 500 482044 482043 F 439 0.00 1339 reject_low 6 ALIGNMENT 119 Y12-3k10.p1k chr12 501 619 485696 485814 F 119 100.00 1339 reject_low 7 ALIGNMENT 0 Y12-3k10.p1k chr06 782 242 31623 31622 C 541 0.00 1339 reject_low 4 ALIGNMENT 119 Y12-3k10.p1k chr12 501 619 472464 472582 F 119 100.00 1339 reject_low 5 ALIGNMENT 30 Y12-3k10.p1k chr12 1012 1175 460219 460394 F 164 78.66 1339 reject_bad_break 0 ALIGNMENT 128 Y12-3k10.p1k chr12 501 634 489348 489481 F 134 98.51 1339 reject_low 3 ALIGNMENT 119 Y12-3k10.p1k chr12 501 619 482044 482162 F 119 100.00 1339 reject_low 6 ALIGNMENT 0 Y12-3k10.p1k chr12 62 500 485696 485695 F 439 0.00 1339 reject_low 7 ALIGNMENT 978 Y12-3k10.q1k chr12 1131 40 454429 455526 C 1092 97.25 1375 reject_low 1 ALIGNMENT 94 Y12-3k10.p1k chr06 241 134 31622 31729 C 108 98.15 1339 reject_low 4 ALIGNMENT 0 Y12-3k10.p1k chr12 620 782 472582 472581 F 163 0.00 1339 reject_low 5 ALIGNMENT 904 Y12-3k12.q1k chr04 41 1096 627274 628342 F 1056 96.21 1331 accept 0 ALIGNMENT 974 Y12-3k12.p1k chr04 1129 20 631064 632184 C 1110 96.85 1324 accept 0 ALIGNMENT 870 Y12-3k13.q1k chr13 1053 36 741592 742629 C 1018 96.37 1335 accept 0 ALIGNMENT 931 Y12-3k13.p1k chr13 20 1108 736922 738011 F 1089 96.33 1443 accept 0 ALIGNMENT 965 Y12-3k14.p1k chr10 20 1209 588266 589468 F 1190 95.71 1351 accept 0 ALIGNMENT 991 Y12-3k14.q1k chr10 1185 39 591805 592972 C 1147 96.69 1389 accept 0 ALIGNMENT 987 Y12-3k15.p1k chr06 1106 27 11659 12747 C 1080 97.78 1407 ambiguous_tel 1 ALIGNMENT 928 Y12-3k15.q1k chr14 43 1163 10218 11345 F 1121 95.72 1392 ambiguous_tel 0 ALIGNMENT 923 Y12-3k15.q1k chr06 43 1163 8308 9438 F 1121 95.54 1392 ambiguous_tel 1 ALIGNMENT 0 Y12-3k15.p1k chr04 858 244 15806 15805 C 615 0.00 1407 reject_low 2 ALIGNMENT 0 Y12-3k15.p1k chr10 244 858 729910 729909 F 615 0.00 1407 reject_low 3 ALIGNMENT 127 Y12-3k15.p1k chr04 243 35 15805 16012 C 209 88.04 1407 reject_low 2 ALIGNMENT 127 Y12-3k15.p1k chr10 35 243 729703 729910 F 209 88.04 1407 reject_low 3 ALIGNMENT 985 Y12-3k15.p1k chr14 1106 27 13563 14650 C 1080 97.78 1407 ambiguous_tel 0 ALIGNMENT 968 Y12-3k16.p1k chr13 1190 24 889787 890968 C 1167 95.37 1359 accept 0 ALIGNMENT 977 Y12-3k16.q1k chr13 38 1146 886195 887319 F 1109 97.02 1372 accept 0 ALIGNMENT 1056 Y12-3k17.p1k chr12 19 1190 453620 454805 F 1172 97.44 1437 accept 0 ALIGNMENT 1056 Y12-3k17.p1k chr12 19 1190 462757 463942 F 1172 97.44 1437 accept 1 ALIGNMENT 1050 Y12-3k17.q1k chr12 1278 38 465456 466701 C 1241 95.49 1411 accept 1 ALIGNMENT 1050 Y12-3k17.q1k chr12 1278 38 456319 457564 C 1241 95.49 1411 accept 0 ALIGNMENT 1002 Y12-3k19.p1k chr14 24 1197 107781 108962 F 1174 95.66 1440 accept 0 ALIGNMENT 1025 Y12-3k19.q1k chr14 1180 36 112116 113268 C 1145 97.21 1367 accept 0 ALIGNMENT 849 Y12-3k20.q1k chr15 39 1021 182416 183413 F 983 96.44 1310 accept 0 ALIGNMENT 155 Y12-3k20.p1k chr15 931 489 186181 186623 C 443 79.23 1349 accept 0 ALIGNMENT 993 Y12-3k21.p1k chr10 1227 21 274297 275509 C 1207 95.36 1416 accept 0 ALIGNMENT 892 Y12-3k21.q1k chr10 39 1049 272236 273264 F 1011 97.63 1279 accept 0 ALIGNMENT 910 Y12-3k22.q1k chr04 43 1082 1466169 1467228 F 1040 96.92 1298 accept 0 ALIGNMENT 976 Y12-3k22.p1k chr04 1103 30 1470470 1471549 C 1074 98.04 1267 accept 0 ALIGNMENT 992 Y12-3k23.p1k chr16 21 1174 249709 250876 F 1154 97.05 1348 accept 0 ALIGNMENT 957 Y12-3k23.q1k chr16 1209 30 253697 254887 C 1180 95.08 1328 accept 0 ALIGNMENT 941 Y12-3k24.p1k chr15 19 1242 1023869 1025100 F 1224 94.20 1272 accept 0 ALIGNMENT 989 Y12-3k24.q1k chr15 1183 52 1029116 1030252 C 1132 96.20 1382 accept 0 ALIGNMENT 472 Y12-3l02.q1k chr15 31 666 456962 457594 F 636 92.30 1428 accept 0 ALIGNMENT 360 Y12-3l03.q1k chr13 676 88 691346 691930 C 589 88.46 1548 accept 0 ALIGNMENT 593 Y12-3l04.q1k chr14 821 28 211642 212438 C 794 92.70 1419 accept 0 ALIGNMENT 668 Y12-3l05.p1k chr07 270 1119 303273 304127 F 850 94.24 1344 accept 0 ALIGNMENT 863 Y12-3l05.q1k chr07 1028 36 308372 309350 C 993 97.38 1487 accept 0 ALIGNMENT 218 Y12-3l06.p1k chr07 773 307 835546 836011 C 467 82.66 1357 accept 0 ALIGNMENT 770 Y12-3l06.q1k chr07 35 1096 830158 831205 F 1062 92.84 1449 accept 0 ALIGNMENT 376 Y12-3l07.p1k chr06 287 942 252801 253450 F 656 86.89 1407 accept 0 ALIGNMENT 906 Y12-3l08.p1k chr15 28 1164 913542 914684 F 1137 94.64 1375 accept 0 ALIGNMENT 1023 Y12-3l08.q1k chr15 1176 38 917904 919051 C 1139 97.45 1408 accept 0 ALIGNMENT 965 Y12-3l09.q1k chr15 1153 41 446458 447578 C 1113 96.50 1391 accept 0 ALIGNMENT 969 Y12-3l09.p1k chr15 21 1141 442261 443390 F 1121 96.43 1350 accept 0 ALIGNMENT 890 Y12-3l10.q1k chr04 42 1087 917524 918583 F 1046 96.94 1337 accept 0 ALIGNMENT 943 Y12-3l10.p1k chr04 1174 18 920735 921900 C 1157 95.76 1358 accept 0 ALIGNMENT 920 Y12-3l11.p1k chr09 21 1098 170122 171214 F 1078 96.38 1332 accept 0 ALIGNMENT 907 Y12-3l11.q1k chr09 1093 35 173474 174547 C 1059 96.22 1363 accept 0 ALIGNMENT 921 Y12-3l12.p1k chr07 1142 20 972463 973602 C 1123 94.75 1337 accept 0 ALIGNMENT 891 Y12-3l12.q1k chr07 47 1014 968998 969974 F 968 98.04 1324 accept 0 ALIGNMENT 996 Y12-3l13.q1k chr12 36 1206 125230 126418 F 1171 95.99 1377 accept 0 ALIGNMENT 0 Y12-3l13.p1k chr12 174 62 130305 130304 C 113 0.00 1369 reject_low 1 ALIGNMENT 759 Y12-3l13.p1k chr12 1208 175 129280 130304 C 1034 92.84 1369 reject_low 1 ALIGNMENT 893 Y12-3l13.p1k chr12 1267 20 129218 130462 C 1248 92.31 1369 accept 0 ALIGNMENT 786 Y12-3l14.p1k chr05 1097 31 100856 101917 C 1067 92.60 1376 accept 0 ALIGNMENT 703 Y12-3l14.q1k chr05 36 1036 97436 98443 F 1001 91.11 1377 accept 0 ALIGNMENT 0 Y12-3l15.q1k chr14 260 884 782280 782279 F 625 0.00 1388 reject_low 16 ALIGNMENT 0 Y12-3l15.q1k chr01 884 262 1806 1805 C 623 0.00 1388 reject_low 10 ALIGNMENT 136 Y12-3l15.q1k chr10 261 53 8774 8982 C 209 88.52 1388 reject_low 12 ALIGNMENT 127 Y12-3l15.q1k chr14 53 259 782074 782280 F 207 87.44 1388 reject_low 16 ALIGNMENT 0 Y12-3l15.q1k chr10 884 262 8775 8774 C 623 0.00 1388 reject_low 12 ALIGNMENT 134 Y12-3l15.q1k chr12 247 53 222701 222895 C 195 89.74 1388 reject_low 14 ALIGNMENT 0 Y12-3l15.q1k chr08 884 282 11898 11897 C 603 0.00 1388 reject_low 3 ALIGNMENT 0 Y12-3l15.q1k chr12 260 884 1063278 1063277 F 625 0.00 1388 reject_low 9 ALIGNMENT 0 Y12-3l15.q1k chr07 262 884 1080676 1080675 F 623 0.00 1388 reject_low 6 ALIGNMENT 135 Y12-3l15.q1k chr15 281 53 11524 11754 C 229 86.90 1388 reject_low 4 ALIGNMENT 132 Y12-3l15.q1k chr11 261 57 1809 2013 C 205 88.29 1388 reject_low 13 ALIGNMENT 0 Y12-3l15.q1k chr07 884 262 6289 6288 C 623 0.00 1388 reject_low 7 ALIGNMENT 0 Y12-3l15.q1k chr12 884 248 222702 222701 C 637 0.00 1388 reject_low 14 ALIGNMENT 0 Y12-3l15.q1k chr15 884 282 11525 11524 C 603 0.00 1388 reject_low 4 ALIGNMENT 0 Y12-3l15.q1k chr02 282 884 809437 809436 F 603 0.00 1388 reject_low 2 ALIGNMENT 0 Y12-3l15.q1k chr09 248 884 434284 434283 F 637 0.00 1388 reject_low 19 ALIGNMENT 142 Y12-3l15.q1k chr07 261 53 6288 6496 C 209 89.47 1388 reject_low 7 ALIGNMENT 937 Y12-3l15.p1k chr01 19 1138 171457 172588 F 1120 96.43 1356 accept 0 ALIGNMENT 136 Y12-3l15.q1k chr01 261 53 1805 2013 C 209 88.52 1388 reject_low 10 ALIGNMENT 195 Y12-3l15.q1k chr06 261 37 99223 99448 C 225 96.00 1388 reject_low 1 ALIGNMENT 139 Y12-3l15.q1k chr04 53 261 1523388 1523596 F 209 89.00 1388 reject_low 8 ALIGNMENT 0 Y12-3l15.q1k chr06 884 262 99224 99223 C 623 0.00 1388 reject_low 1 ALIGNMENT 150 Y12-3l15.q1k chr05 37 261 63867 64092 F 225 89.33 1388 reject_low 5 ALIGNMENT 112 Y12-3l15.q1k chr13 37 247 922787 922998 F 211 84.83 1388 reject_low 17 ALIGNMENT 118 Y12-3l15.q1k chr09 57 247 434094 434284 F 191 87.43 1388 reject_low 19 ALIGNMENT 0 Y12-3l15.q1k chr05 262 884 64092 64091 F 623 0.00 1388 reject_low 5 ALIGNMENT 109 Y12-3l15.q1k chr15 37 247 1082982 1083193 F 211 84.36 1388 reject_low 18 ALIGNMENT 0 Y12-3l15.q1k chr12 884 260 13084 13083 C 625 0.00 1388 reject_low 15 ALIGNMENT 139 Y12-3l15.q1k chr08 281 53 11897 12127 C 229 87.34 1388 reject_low 3 ALIGNMENT 152 Y12-3l15.q1k chr07 45 261 1080460 1080676 F 217 90.32 1388 reject_low 6 ALIGNMENT 0 Y12-3l15.q1k chr09 884 262 8792 8791 C 623 0.00 1388 reject_low 11 ALIGNMENT 984 Y12-3l15.q1k chr01 1215 37 175683 176876 C 1179 96.44 1388 accept 0 ALIGNMENT 139 Y12-3l15.q1k chr12 53 259 1063072 1063278 F 207 89.37 1388 reject_low 9 ALIGNMENT 127 Y12-3l15.q1k chr12 259 53 13083 13289 C 207 87.44 1388 reject_low 15 ALIGNMENT 0 Y12-3l15.q1k chr13 248 884 922998 922997 F 637 0.00 1388 reject_low 17 ALIGNMENT 0 Y12-3l15.q1k chr11 884 262 1810 1809 C 623 0.00 1388 reject_low 13 ALIGNMENT 149 Y12-3l15.q1k chr02 45 281 809199 809437 F 237 88.19 1388 reject_low 2 ALIGNMENT 0 Y12-3l15.q1k chr04 262 884 1523596 1523595 F 623 0.00 1388 reject_low 8 ALIGNMENT 0 Y12-3l15.q1k chr15 248 884 1083193 1083192 F 637 0.00 1388 reject_low 18 ALIGNMENT 136 Y12-3l15.q1k chr09 261 53 8791 8999 C 209 88.52 1388 reject_low 11 ALIGNMENT 971 Y12-3l17.q1k chr14 38 1193 2166 3329 F 1156 95.33 1394 ambiguous_tel 14 ALIGNMENT 975 Y12-3l17.q1k chr02 38 1193 2582 3747 F 1156 95.50 1394 ambiguous_tel 3 ALIGNMENT 971 Y12-3l17.q1k chr07 1193 38 1087639 1088802 C 1156 95.33 1394 ambiguous_tel 11 ALIGNMENT 971 Y12-3l17.q1k chr16 38 1193 2075 3238 F 1156 95.33 1394 ambiguous_tel 16 ALIGNMENT 971 Y12-3l17.q1k chr12 1193 38 1068271 1069434 C 1156 95.33 1394 ambiguous_tel 12 ALIGNMENT 983 Y12-3l17.q1k chr05 38 1193 2230 3393 F 1156 95.67 1394 ambiguous_tel 2 ALIGNMENT 1001 Y12-3l17.q1k chr09 38 1193 2554 3717 F 1156 96.19 1394 ambiguous_tel 1 ALIGNMENT 971 Y12-3l17.q1k chr04 1193 38 1528733 1529896 C 1156 95.33 1394 ambiguous_tel 9 ALIGNMENT 971 Y12-3l17.q1k chr05 1193 38 573562 574725 C 1156 95.33 1394 ambiguous_tel 10 ALIGNMENT 974 Y12-3l17.q1k chr16 1193 38 944631 945794 C 1156 95.42 1394 ambiguous_tel 8 ALIGNMENT 974 Y12-3l17.q1k chr12 38 1193 7918 9081 F 1156 95.42 1394 ambiguous_tel 6 ALIGNMENT 969 Y12-3l17.q1k chr06 63 1193 1445 2583 F 1131 95.93 1394 ambiguous_tel 17 ALIGNMENT 974 Y12-3l17.q1k chr13 38 1193 2259 3422 F 1156 95.42 1394 ambiguous_tel 7 ALIGNMENT 971 Y12-3l17.q1k chr12 1193 38 1074934 1076097 C 1156 95.33 1394 ambiguous_tel 13 ALIGNMENT 950 Y12-3l17.q1k chr08 38 1193 2111 3278 F 1156 94.81 1394 ambiguous_tel 18 ALIGNMENT 974 Y12-3l17.q1k chr12 38 1193 2383 3546 F 1156 95.42 1394 ambiguous_tel 5 ALIGNMENT 1007 Y12-3l17.q1k chr10 38 1193 2537 3700 F 1156 96.37 1394 ambiguous_tel 0 ALIGNMENT 971 Y12-3l17.q1k chr15 1193 38 1087898 1089061 C 1156 95.33 1394 ambiguous_tel 15 ALIGNMENT 975 Y12-3l17.q1k chr08 1193 38 559084 560249 C 1156 95.50 1394 ambiguous_tel 4 ALIGNMENT 965 Y12-3l18.p1k chr11 1174 19 583904 585066 C 1156 95.67 1333 accept 0 ALIGNMENT 914 Y12-3l18.q1k chr11 37 1084 580481 581540 F 1048 96.76 1353 accept 0 ALIGNMENT 964 Y12-3l19.q1k chr02 31 1284 588445 589703 F 1254 93.46 1381 accept_chi 0 ALIGNMENT 940 Y12-3l19.p1k chr13 19 1139 83613 84746 F 1121 96.43 1350 accept_chi 1 ALIGNMENT 1011 Y12-3l20.q1k chr07 40 1128 494148 495239 F 1089 98.53 1359 accept 0 ALIGNMENT 965 Y12-3l20.p1k chr07 1193 22 497474 498658 C 1172 95.73 1339 accept 0 ALIGNMENT 852 Y12-3l21.p1k chr05 31 1267 93862 95091 F 1237 91.92 1337 accept 0 ALIGNMENT 810 Y12-3l21.q1k chr05 1053 42 97790 98806 C 1012 94.07 1328 accept 0 ALIGNMENT 1011 Y12-3l22.p1k chr07 22 1231 492564 493768 F 1210 95.62 1309 accept 0 ALIGNMENT 998 Y12-3l22.q1k chr07 1172 41 495024 496169 C 1132 97.08 1324 accept 0 ALIGNMENT 962 Y12-3l23.p1k chr10 19 1212 654109 655288 F 1194 95.39 1335 accept 0 ALIGNMENT 934 Y12-3l23.q1k chr10 1174 52 657272 658405 C 1123 95.01 1330 accept 0 ALIGNMENT 889 Y12-3l24.q1k chr14 37 1066 361177 362215 F 1030 97.09 1255 accept 0 ALIGNMENT 1026 Y12-3l24.p1k chr14 1229 29 365470 366667 C 1201 96.42 1285 accept 0 ALIGNMENT 772 Y12-3m01.q1k chr07 952 28 794519 795447 C 925 95.89 1358 accept 0 ALIGNMENT 532 Y12-3m01.p1k chr07 280 1016 790845 791581 F 737 90.91 1404 accept 0 ALIGNMENT 451 Y12-3m02.q1k chr16 697 32 736903 737567 C 666 90.69 1372 accept 0 ALIGNMENT 660 Y12-3m03.q1k chr05 36 801 469973 470731 F 766 97.00 1541 accept 0 ALIGNMENT 252 Y12-3m04.q1k chr16 526 105 905240 905655 C 422 88.63 1427 accept 0 ALIGNMENT 209 Y12-3m06.q1k chr16 486 37 816346 816778 C 450 85.78 1670 accept 0 ALIGNMENT 951 Y12-3m08.q1k chr15 1124 38 435959 437057 C 1087 98.25 1336 accept 0 ALIGNMENT 947 Y12-3m08.p1k chr15 27 1117 433046 434152 F 1091 96.70 1324 accept 0 ALIGNMENT 0 Y12-3m09.p1k chr04 848 191 1206971 1206970 C 658 0.00 1439 reject_low 31 ALIGNMENT 0 Y12-3m09.p1k chr13 215 848 372798 372797 F 634 0.00 1439 reject_low 24 ALIGNMENT 0 Y12-3m09.p1k chr07 139 62 774161 774160 C 78 0.00 1439 reject_low 39 ALIGNMENT 0 Y12-3m09.p1k chr04 848 215 1101586 1101585 C 634 0.00 1439 reject_low 14 ALIGNMENT 0 Y12-3m09.p1k chr04 147 62 1096085 1096084 C 86 0.00 1439 reject_low 35 ALIGNMENT 22 Y12-3m09.p1k chr14 154 190 96631 96667 F 37 89.19 1439 reject_low 1 ALIGNMENT 835 Y12-3m09.q1k chr02 37 1121 263540 264635 F 1085 93.92 1343 reject_low 8 ALIGNMENT 21 Y12-3m09.p1k chr07 191 214 817477 817500 F 24 95.83 1439 reject_low 23 ALIGNMENT 21 Y12-3m09.p1k chr16 214 191 850234 850257 C 24 95.83 1439 reject_low 25 ALIGNMENT 23 Y12-3m09.p1k chr08 148 190 543625 543667 F 43 88.37 1439 reject_low 37 ALIGNMENT 928 Y12-3m09.q1k chr07 37 1121 539731 540826 F 1085 96.77 1343 reject_low 4 ALIGNMENT 0 Y12-3m09.p1k chr03 190 191 169461 169481 C 0 0.00 1439 reject_low 34 ALIGNMENT 0 Y12-3m09.p1k chr03 147 62 169525 169524 C 86 0.00 1439 reject_low 34 ALIGNMENT 0 Y12-3m09.p1k chr16 215 848 850727 850726 F 634 0.00 1439 reject_low 26 ALIGNMENT 753 Y12-3m09.q1k chr13 37 1065 188131 189163 F 1029 92.61 1343 reject_low 16 ALIGNMENT 0 Y12-3m09.p1k chr13 62 153 357025 357024 F 92 0.00 1439 reject_low 2 ALIGNMENT 750 Y12-3m09.q1k chr12 1065 37 476900 477932 C 1029 92.52 1343 reject_low 18 ALIGNMENT 0 Y12-3m09.p1k chr07 191 190 817456 817476 F 0 0.00 1439 reject_low 23 ALIGNMENT 24 Y12-3m09.p1k chr04 210 187 981400 981423 C 24 100.00 1439 reject_low 28 ALIGNMENT 0 Y12-3m09.p1k chr04 153 62 1207007 1207006 C 92 0.00 1439 reject_low 31 ALIGNMENT 22 Y12-3m09.p1k chr16 154 190 850646 850682 F 37 89.19 1439 reject_low 26 ALIGNMENT 0 Y12-3m09.p1k chr12 190 191 651081 651101 C 0 0.00 1439 reject_low 44 ALIGNMENT 0 Y12-3m09.p1k chr07 848 211 817315 817314 C 638 0.00 1439 reject_low 45 ALIGNMENT 22 Y12-3m09.p1k chr01 154 190 165848 165884 F 37 89.19 1439 reject_low 42 ALIGNMENT 23 Y12-3m09.p1k chr03 190 148 169482 169524 C 43 88.37 1439 reject_low 34 ALIGNMENT 24 Y12-3m09.p1k chr08 187 210 91837 91860 F 24 100.00 1439 reject_low 30 ALIGNMENT 21 Y12-3m09.p1k chr01 191 214 165906 165929 F 24 95.83 1439 reject_low 42 ALIGNMENT 0 Y12-3m09.p1k chr04 186 62 981424 981423 C 125 0.00 1439 reject_low 28 ALIGNMENT 0 Y12-3m09.p1k chr01 191 190 165885 165905 F 0 0.00 1439 reject_low 42 ALIGNMENT 901 Y12-3m09.q1k chr14 1121 37 97467 98562 C 1085 95.94 1343 reject_low 1 ALIGNMENT 21 Y12-3m09.p1k chr04 214 191 1101585 1101608 C 24 95.83 1439 reject_low 14 ALIGNMENT 0 Y12-3m09.p1k chr16 190 191 850258 850278 C 0 0.00 1439 reject_low 25 ALIGNMENT 0 Y12-3m09.p1k chr07 848 215 536000 535999 C 634 0.00 1439 reject_low 41 ALIGNMENT 0 Y12-3m09.p1k chr13 191 848 362643 362642 F 658 0.00 1439 reject_low 6 ALIGNMENT 0 Y12-3m09.p1k chr08 191 190 543668 543688 F 0 0.00 1439 reject_low 37 ALIGNMENT 0 Y12-3m09.p1k chr16 147 62 850322 850321 C 86 0.00 1439 reject_low 25 ALIGNMENT 750 Y12-3m09.q1k chr05 1065 37 444318 445350 C 1029 92.52 1343 reject_low 17 ALIGNMENT 0 Y12-3m09.p1k chr16 62 153 810246 810245 F 92 0.00 1439 reject_low 32 ALIGNMENT 21 Y12-3m09.p1k chr05 183 154 312397 312426 C 30 93.33 1439 reject_low 43 ALIGNMENT 23 Y12-3m09.p1k chr04 190 148 1096042 1096084 C 43 88.37 1439 reject_low 35 ALIGNMENT 0 Y12-3m09.p1k chr05 848 211 312350 312349 C 638 0.00 1439 reject_low 43 ALIGNMENT 753 Y12-3m09.q1k chr04 37 1065 1099729 1100761 F 1029 92.61 1343 reject_low 14 ALIGNMENT 0 Y12-3m09.p1k chr16 848 215 850235 850234 C 634 0.00 1439 reject_low 25 ALIGNMENT 0 Y12-3m09.p1k chr08 62 186 91837 91836 F 125 0.00 1439 reject_low 30 ALIGNMENT 22 Y12-3m09.p1k chr12 190 154 651102 651138 C 37 89.19 1439 reject_low 44 ALIGNMENT 0 Y12-3m09.p1k chr05 153 62 312427 312426 C 92 0.00 1439 reject_low 43 ALIGNMENT 23 Y12-3m09.p1k chr16 190 148 844688 844730 C 43 88.37 1439 reject_low 38 ALIGNMENT 814 Y12-3m09.q1k chr13 1121 37 373559 374654 C 1085 93.36 1343 reject_low 6,24 ALIGNMENT 0 Y12-3m09.p1k chr05 848 211 62378 62377 C 638 0.00 1439 reject_low 46 ALIGNMENT 0 Y12-3m09.p1k chr16 848 215 844644 844643 C 634 0.00 1439 reject_low 38 ALIGNMENT 21 Y12-3m09.p1k chr07 183 154 402243 402272 C 30 93.33 1439 reject_low 40 ALIGNMENT 23 Y12-3m09.p1k chr16 190 148 850279 850321 C 43 88.37 1439 reject_low 25 ALIGNMENT 0 Y12-3m09.p1k chr08 62 147 543625 543624 F 86 0.00 1439 reject_low 37 ALIGNMENT 0 Y12-3m09.p1k chr13 62 153 362607 362606 F 92 0.00 1439 reject_low 6 ALIGNMENT 0 Y12-3m09.p1k chr04 848 215 1095998 1095997 C 634 0.00 1439 reject_low 35,36 ALIGNMENT 0 Y12-3m09.p1k chr16 146 62 804642 804641 C 85 0.00 1439 reject_low 33 ALIGNMENT 753 Y12-3m09.q1k chr16 37 1065 848378 849410 F 1029 92.61 1343 reject_low 25 ALIGNMENT 0 Y12-3m09.p1k chr08 211 848 91860 91859 F 638 0.00 1439 reject_low 30 ALIGNMENT 0 Y12-3m09.p1k chr07 153 62 536081 536080 C 92 0.00 1439 reject_low 41 ALIGNMENT 0 Y12-3m09.p1k chr07 848 215 402192 402191 C 634 0.00 1439 reject_low 40 ALIGNMENT 23 Y12-3m09.p1k chr13 148 190 372711 372753 F 43 88.37 1439 reject_low 24 ALIGNMENT 23 Y12-3m09.p1k chr07 209 187 774070 774092 C 23 100.00 1439 reject_low 39 ALIGNMENT 22 Y12-3m09.p1k chr05 210 189 62377 62398 C 22 100.00 1439 reject_low 46 ALIGNMENT 0 Y12-3m09.p1k chr13 191 190 372754 372774 F 0 0.00 1439 reject_low 24 ALIGNMENT 0 Y12-3m09.p1k chr05 188 183 62399 62424 C 6 0.00 1439 reject_low 46 ALIGNMENT 849 Y12-3m09.q1k chr04 1065 37 987641 988673 C 1029 95.63 1343 reject_low 9 ALIGNMENT 0 Y12-3m09.p1k chr07 62 121 817389 817388 F 60 0.00 1439 reject_low 23 ALIGNMENT 814 Y12-3m09.q1k chr07 1121 37 818255 819350 C 1085 93.27 1343 reject_low 23 ALIGNMENT 0 Y12-3m09.p1k chr07 153 62 402273 402272 C 92 0.00 1439 reject_low 40 ALIGNMENT 0 Y12-3m09.p1k chr11 62 186 313321 313320 F 125 0.00 1439 reject_low 27 ALIGNMENT 0 Y12-3m09.p1k chr07 186 184 536027 536050 C 3 0.00 1439 reject_low 41 ALIGNMENT 0 Y12-3m09.p1k chr05 186 184 312373 312396 C 3 0.00 1439 reject_low 43 ALIGNMENT 0 Y12-3m09.p1k chr04 186 62 1352893 1352892 C 125 0.00 1439 reject_low 29 ALIGNMENT 0 Y12-3m09.p1k chr16 62 153 850646 850645 F 92 0.00 1439 reject_low 26 ALIGNMENT 0 Y12-3m09.p1k chr14 62 153 96631 96630 F 92 0.00 1439 reject_low 1 ALIGNMENT 21 Y12-3m09.p1k chr07 122 190 817389 817455 F 69 82.61 1439 reject_low 23 ALIGNMENT 0 Y12-3m09.p1k chr07 186 184 402219 402242 C 3 0.00 1439 reject_low 40 ALIGNMENT 21 Y12-3m09.p1k chr04 214 191 1095997 1096020 C 24 95.83 1439 reject_low 35,36 ALIGNMENT 22 Y12-3m09.p1k chr07 182 140 774118 774160 C 43 88.37 1439 reject_low 39 ALIGNMENT 808 Y12-3m09.q1k chr12 1121 37 215944 217039 C 1085 93.18 1343 reject_low 13 ALIGNMENT 1008 Y12-3m09.p1k chr14 1134 25 103699 104820 C 1110 97.75 1439 accept 0 ALIGNMENT 25 Y12-3m09.p1k chr11 187 214 313321 313348 F 28 96.43 1439 reject_low 27 ALIGNMENT 0 Y12-3m09.p1k chr13 62 147 372711 372710 F 86 0.00 1439 reject_low 24 ALIGNMENT 21 Y12-3m09.p1k chr13 191 214 372775 372798 F 24 95.83 1439 reject_low 24 ALIGNMENT 0 Y12-3m09.p1k chr16 191 190 850683 850703 F 0 0.00 1439 reject_low 26 ALIGNMENT 22 Y12-3m09.p1k chr13 154 190 357025 357061 F 37 89.19 1439 reject_low 2 ALIGNMENT 717 Y12-3m09.q1k chr16 1065 37 805563 806595 C 1029 91.45 1343 reject_low 15 ALIGNMENT 21 Y12-3m09.p1k chr08 191 214 543689 543712 F 24 95.83 1439 reject_low 37 ALIGNMENT 0 Y12-3m09.p1k chr04 848 211 1352870 1352869 C 638 0.00 1439 reject_low 29 ALIGNMENT 20 Y12-3m09.p1k chr05 182 154 62425 62453 C 29 93.10 1439 reject_low 46 ALIGNMENT 0 Y12-3m09.p1k chr11 215 848 313348 313347 F 634 0.00 1439 reject_low 27 ALIGNMENT 0 Y12-3m09.p1k chr01 62 153 165848 165847 F 92 0.00 1439 reject_low 42 ALIGNMENT 0 Y12-3m09.p1k chr16 62 153 804662 804661 F 92 0.00 1439 reject_low 15 ALIGNMENT 21 Y12-3m09.p1k chr16 177 147 804611 804641 C 31 93.55 1439 reject_low 33 ALIGNMENT 750 Y12-3m09.q1k chr13 37 1065 200298 201330 F 1029 92.52 1343 reject_low 19 ALIGNMENT 0 Y12-3m09.p1k chr01 215 848 165929 165928 F 634 0.00 1439 reject_low 42 ALIGNMENT 849 Y12-3m09.q1k chr12 37 1065 654791 655823 F 1029 95.63 1343 reject_low 11 ALIGNMENT 0 Y12-3m09.p1k chr07 186 183 774093 774117 C 4 0.00 1439 reject_low 39 ALIGNMENT 0 Y12-3m09.p1k chr16 191 848 804698 804697 F 658 0.00 1439 reject_low 15 ALIGNMENT 23 Y12-3m09.p1k chr04 190 148 1101630 1101672 C 43 88.37 1439 reject_low 36 ALIGNMENT 0 Y12-3m09.p1k chr14 191 190 96668 96688 F 0 0.00 1439 reject_low 1 ALIGNMENT 0 Y12-3m09.p1k chr08 215 848 543712 543711 F 634 0.00 1439 reject_low 37 ALIGNMENT 21 Y12-3m09.p1k chr07 183 154 536051 536080 C 30 93.33 1439 reject_low 41 ALIGNMENT 0 Y12-3m09.p1k chr13 191 848 357061 357060 F 658 0.00 1439 reject_low 2 ALIGNMENT 0 Y12-3m09.p1k chr16 848 178 804612 804611 C 671 0.00 1439 reject_low 33 ALIGNMENT 940 Y12-3m09.q1k chr13 1121 37 357861 358956 C 1085 97.14 1343 reject_low 2 ALIGNMENT 22 Y12-3m09.p1k chr13 154 190 362607 362643 F 37 89.19 1439 reject_low 6 ALIGNMENT 849 Y12-3m09.q1k chr04 37 1065 1210657 1211689 F 1029 95.63 1343 reject_low 10 ALIGNMENT 20 Y12-3m09.p1k chr12 210 191 651061 651080 C 20 100.00 1439 reject_low 44 ALIGNMENT 0 Y12-3m09.p1k chr04 190 62 1101609 1101608 C 129 0.00 1439 reject_low 14 ALIGNMENT 0 Y12-3m09.p1k chr12 848 211 651062 651061 C 638 0.00 1439 reject_low 44 ALIGNMENT 22 Y12-3m09.p1k chr16 154 190 810246 810282 F 37 89.19 1439 reject_low 32 ALIGNMENT 0 Y12-3m09.p1k chr07 186 183 817338 817360 C 4 0.00 1439 reject_low 45 ALIGNMENT 817 Y12-3m09.q1k chr05 1121 37 493354 494449 C 1085 93.46 1343 reject_low 12 ALIGNMENT 0 Y12-3m09.p1k chr16 147 62 844731 844730 C 86 0.00 1439 reject_low 38 ALIGNMENT 21 Y12-3m09.p1k chr16 214 191 844643 844666 C 24 95.83 1439 reject_low 38 ALIGNMENT 940 Y12-3m09.q1k chr02 37 1121 225003 226098 F 1085 97.14 1343 reject_low 3 ALIGNMENT 24 Y12-3m09.p1k chr05 210 187 312349 312372 C 24 100.00 1439 reject_low 43 ALIGNMENT 723 Y12-3m09.q1k chr16 1065 37 851551 852583 C 1029 91.64 1343 reject_low 26 ALIGNMENT 0 Y12-3m09.p1k chr05 153 62 62454 62453 C 92 0.00 1439 reject_low 46 ALIGNMENT 750 Y12-3m09.q1k chr15 37 1065 121669 122701 F 1029 92.52 1343 reject_low 20 ALIGNMENT 750 Y12-3m09.q1k chr16 37 1065 60418 61450 F 1029 92.52 1343 reject_low 21 ALIGNMENT 21 Y12-3m09.p1k chr14 191 214 96689 96712 F 24 95.83 1439 reject_low 1 ALIGNMENT 25 Y12-3m09.p1k chr07 214 187 535999 536026 C 28 96.43 1439 reject_low 41 ALIGNMENT 24 Y12-3m09.p1k chr07 210 187 817314 817337 C 24 100.00 1439 reject_low 45 ALIGNMENT 0 Y12-3m09.p1k chr14 215 848 96712 96711 F 634 0.00 1439 reject_low 1 ALIGNMENT 25 Y12-3m09.p1k chr07 214 187 402191 402218 C 28 96.43 1439 reject_low 40 ALIGNMENT 919 Y12-3m09.q1k chr10 37 1121 481928 483023 F 1085 96.50 1343 reject_low 5 ALIGNMENT 22 Y12-3m09.p1k chr04 190 154 1206970 1207006 C 37 89.19 1439 reject_low 31 ALIGNMENT 0 Y12-3m09.p1k chr04 190 191 1096021 1096041 C 0 0.00 1439 reject_low 35 ALIGNMENT 22 Y12-3m09.p1k chr16 154 190 804662 804698 F 37 89.19 1439 reject_low 15 ALIGNMENT 0 Y12-3m09.p1k chr07 848 210 774071 774070 C 639 0.00 1439 reject_low 39 ALIGNMENT 0 Y12-3m09.p1k chr04 147 62 1101673 1101672 C 86 0.00 1439 reject_low 36 ALIGNMENT 0 Y12-3m09.p1k chr07 157 62 817386 817385 C 96 0.00 1439 reject_low 45 ALIGNMENT 0 Y12-3m09.p1k chr16 190 191 844667 844687 C 0 0.00 1439 reject_low 38 ALIGNMENT 0 Y12-3m09.p1k chr04 190 191 1096021 1101629 C 0 0.00 1439 reject_low 36 ALIGNMENT 0 Y12-3m09.p1k chr16 191 848 810282 810281 F 658 0.00 1439 reject_low 32 ALIGNMENT 0 Y12-3m09.p1k chr12 153 62 651139 651138 C 92 0.00 1439 reject_low 44 ALIGNMENT 0 Y12-3m09.p1k chr07 215 848 817500 817499 F 634 0.00 1439 reject_low 23 ALIGNMENT 0 Y12-3m09.p1k chr03 848 215 169438 169437 C 634 0.00 1439 reject_low 34 ALIGNMENT 0 Y12-3m09.p1k chr04 848 211 981401 981400 C 638 0.00 1439 reject_low 28 ALIGNMENT 838 Y12-3m09.q1k chr15 37 1121 598782 599877 F 1085 94.01 1343 reject_low 7 ALIGNMENT 24 Y12-3m09.p1k chr04 210 187 1352869 1352892 C 24 100.00 1439 reject_low 29 ALIGNMENT 729 Y12-3m09.q1k chr10 37 1065 476344 477376 F 1029 91.84 1343 reject_low 22 ALIGNMENT 21 Y12-3m09.p1k chr16 191 214 850704 850727 F 24 95.83 1439 reject_low 26 ALIGNMENT 21 Y12-3m09.p1k chr03 214 191 169437 169460 C 24 95.83 1439 reject_low 34 ALIGNMENT 20 Y12-3m09.p1k chr07 182 158 817361 817385 C 25 96.00 1439 reject_low 45 ALIGNMENT 998 Y12-3m11.q1k chr13 37 1157 840435 841566 F 1121 97.41 1345 accept 0 ALIGNMENT 972 Y12-3m11.p1k chr13 1141 21 843994 845132 C 1121 97.32 1429 accept 0 ALIGNMENT 977 Y12-3m12.p1k chr12 25 1133 890489 891613 F 1109 96.93 1299 accept 0 ALIGNMENT 960 Y12-3m12.q1k chr12 1167 40 894732 895869 C 1128 96.28 1376 accept 0 ALIGNMENT 948 Y12-3m13.q1k chr05 1214 37 476401 477592 C 1178 94.31 1386 accept 0 ALIGNMENT 991 Y12-3m13.p1k chr05 23 1187 475048 476220 F 1165 95.71 1442 accept 0 ALIGNMENT 921 Y12-3m14.q1k chr04 1082 40 656818 657876 C 1043 96.93 1341 accept 0 ALIGNMENT 996 Y12-3m14.p1k chr04 22 1297 652897 654173 F 1276 94.44 1382 accept 0 ALIGNMENT 0 Y12-3m14.p1k chr05 62 735 545617 545616 F 674 0.00 1382 reject_low 1 ALIGNMENT 115 Y12-3m14.p1k chr05 736 995 545617 545880 F 260 82.31 1382 reject_low 1 ALIGNMENT 786 Y12-3m15.q1k chr04 1081 37 1016118 1017136 C 1045 93.49 1368 accept 0 ALIGNMENT 834 Y12-3m15.p1k chr04 23 1024 1012426 1013441 F 1002 96.41 1402 accept 0 ALIGNMENT 874 Y12-3m16.q1k chr04 1049 37 1297325 1298351 C 1013 96.45 1287 accept 0 ALIGNMENT 955 Y12-3m16.p1k chr04 30 1201 1292711 1293871 F 1172 95.14 1382 accept 0 ALIGNMENT 910 Y12-3m17.q1k chr06 1189 40 8644 9817 C 1150 94.43 1315 ambiguous_tel 1 ALIGNMENT 919 Y12-3m17.q1k chr14 1144 40 10604 11724 C 1105 95.57 1315 ambiguous_tel 2 ALIGNMENT 900 Y12-3m17.p1k chr13 20 1043 467700 468734 F 1024 97.46 1385 accept 0 ALIGNMENT 640 Y12-3m18.q1k chr13 54 917 718002 718865 F 864 92.59 1477 accept 0 ALIGNMENT 864 Y12-3m19.p1k chr16 1163 17 591323 592450 C 1147 93.64 1440 accept_chi 1 ALIGNMENT 22 Y12-3m19.p1k chr08 733 773 111526 111566 F 41 90.24 1440 reject_low 2 ALIGNMENT 0 Y12-3m19.p1k chr08 62 732 111526 111525 F 671 0.00 1440 reject_low 2 ALIGNMENT 1021 Y12-3m19.q1k chr15 1304 33 201154 202419 C 1272 94.18 1382 accept_chi 0 ALIGNMENT 0 Y12-3m19.p1k chr04 723 62 538765 538764 C 662 0.00 1440 reject_low 3 ALIGNMENT 21 Y12-3m19.p1k chr04 759 724 538729 538764 C 36 97.22 1440 reject_low 3 ALIGNMENT 0 Y12-3m20.p1k chr04 834 62 561566 561565 C 773 0.00 1326 reject_low 1 ALIGNMENT 898 Y12-3m20.q1k chr13 39 1055 718002 719028 F 1017 97.44 1291 accept 0 ALIGNMENT 943 Y12-3m20.p1k chr13 1179 19 722800 723970 C 1161 95.61 1326 accept 0 ALIGNMENT 24 Y12-3m20.p1k chr04 859 835 561541 561565 C 25 100.00 1326 reject_low 1 ALIGNMENT 935 Y12-3m21.q1k chr11 40 1097 30843 31912 F 1058 97.07 1308 accept 0 ALIGNMENT 1000 Y12-3m21.p1k chr11 1104 22 34162 35247 C 1083 97.97 1425 accept 0 ALIGNMENT 0 Y12-3m22.p1k chr09 870 621 17810 18060 C 250 0.00 1289 reject_low 4 ALIGNMENT 0 Y12-3m22.p1k chr02 621 831 805834 805833 F 211 0.00 1289 reject_low 3 ALIGNMENT 0 Y12-3m22.p1k chr07 62 166 1076641 1076640 F 105 0.00 1289 reject_low 2 ALIGNMENT 0 Y12-3m22.p1k chr09 166 62 18515 18514 C 105 0.00 1289 reject_low 4 ALIGNMENT 995 Y12-3m22.q1k chr10 38 1248 21336 22560 F 1211 94.88 1339 accept 0 ALIGNMENT 0 Y12-3m22.p1k chr07 166 62 1068959 1068958 C 105 0.00 1289 reject_low 1 ALIGNMENT 0 Y12-3m22.p1k chr07 831 700 1068427 1068426 C 132 0.00 1289 reject_low 1 ALIGNMENT 142 Y12-3m22.p1k chr07 699 167 1068426 1068958 C 533 76.17 1289 reject_low 1 ALIGNMENT 158 Y12-3m22.p1k chr07 167 620 1076641 1077094 F 454 78.63 1289 reject_low 2 ALIGNMENT 0 Y12-3m22.p1k chr07 621 831 1077094 1077093 F 211 0.00 1289 reject_low 2 ALIGNMENT 0 Y12-3m22.p1k chr02 62 166 805381 805380 F 105 0.00 1289 reject_low 3 ALIGNMENT 978 Y12-3m22.p1k chr10 1136 17 25086 26217 C 1120 96.70 1289 accept 0 ALIGNMENT 143 Y12-3m22.p1k chr09 620 167 18061 18514 C 454 77.53 1289 reject_low 4 ALIGNMENT 23 Y12-3m22.p1k chr09 900 871 17780 17809 C 30 93.33 1289 reject_low 4 ALIGNMENT 152 Y12-3m22.p1k chr02 167 620 805381 805834 F 454 78.19 1289 reject_low 3 ALIGNMENT 866 Y12-3m24.p1k chr10 1106 48 581905 582976 C 1059 95.56 1226 accept 0 ALIGNMENT 983 Y12-3m24.q1k chr10 38 1103 578624 579700 F 1066 97.84 1289 accept 0 ALIGNMENT 94 Y12-3n01.p1k chr12 27 141 451799 451914 F 115 94.78 1312 manual 0 ALIGNMENT 86 Y12-3n01.p1k chr12 27 139 489767 489880 F 113 92.92 1312 manual 2 ALIGNMENT 94 Y12-3n01.p1k chr12 27 141 460936 461051 F 115 94.78 1312 manual 1 ALIGNMENT 911 Y12-3n02.q1k chr12 1132 33 1022821 1023918 C 1100 95.27 1351 accept 0 ALIGNMENT 372 Y12-3n03.p1k chr10 520 1189 327805 328472 F 670 87.31 1486 accept_chi 1 ALIGNMENT 626 Y12-3n03.q1k chr12 790 38 588424 589175 C 753 96.15 1415 accept_chi 0 ALIGNMENT 600 Y12-3n04.q1k chr04 952 33 449479 450390 C 920 90.98 1393 accept 0 ALIGNMENT 228 Y12-3n05.q1k chr02 25 373 321617 321964 F 349 90.54 1400 accept 0 ALIGNMENT 260 Y12-3n06.q1k chr03 547 48 129872 130366 C 500 85.40 1523 accept 0 ALIGNMENT 385 Y12-3n07.q1k chr16 631 35 43910 44504 C 597 88.94 1420 accept 0 ALIGNMENT 952 Y12-3n08.q1k chr04 1185 36 593752 594913 C 1150 95.22 1370 accept 0 ALIGNMENT 937 Y12-3n08.p1k chr04 27 1162 591068 592196 F 1136 95.07 1389 accept 0 ALIGNMENT 132 Y12-3n09.q1k chr14 36 249 9344 9557 F 214 88.79 1394 reject_low 4 ALIGNMENT 92 Y12-3n09.q1k chr04 36 150 2816 2931 F 115 93.91 1394 reject_low 5 ALIGNMENT 0 Y12-3n09.q1k chr14 250 930 9557 9556 F 681 0.00 1394 reject_low 4 ALIGNMENT 0 Y12-3n09.q1k chr07 930 250 1081509 1081508 C 681 0.00 1394 reject_low 3 ALIGNMENT 0 Y12-3n09.q1k chr04 151 930 2931 2930 F 780 0.00 1394 reject_low 5 ALIGNMENT 165 Y12-3n09.q1k chr02 249 36 810252 810465 C 214 93.93 1394 reject_low 1 ALIGNMENT 33 Y12-3n09.q1k chr08 36 151 7414 7530 F 116 76.72 1394 reject_low 8 ALIGNMENT 92 Y12-3n09.q1k chr10 150 36 742785 742900 C 115 93.91 1394 reject_low 6 ALIGNMENT 60 Y12-3n09.q1k chr11 36 251 15577 15791 F 216 77.78 1394 reject_low 7 ALIGNMENT 0 Y12-3n09.q1k chr06 250 930 7647 7646 F 681 0.00 1394 reject_low 2 ALIGNMENT 0 Y12-3n09.q1k chr11 252 930 15791 15790 F 679 0.00 1394 reject_low 7 ALIGNMENT 978 Y12-3n09.p1k chr13 1174 16 12561 13732 C 1159 96.03 1336 accept 0 ALIGNMENT 0 Y12-3n09.q1k chr02 930 250 810253 810252 C 681 0.00 1394 reject_low 1 ALIGNMENT 929 Y12-3n09.q1k chr13 36 1257 8252 9473 F 1222 93.78 1394 accept 0 ALIGNMENT 132 Y12-3n09.q1k chr07 249 36 1081508 1081721 C 214 88.79 1394 reject_low 3 ALIGNMENT 138 Y12-3n09.q1k chr06 36 249 7434 7647 F 214 89.72 1394 reject_low 2 ALIGNMENT 0 Y12-3n09.q1k chr08 152 930 7530 7529 F 779 0.00 1394 reject_low 8 ALIGNMENT 0 Y12-3n09.q1k chr10 930 151 742786 742785 C 780 0.00 1394 reject_low 6 ALIGNMENT 973 Y12-3n11.q1k chr10 38 1137 16981 18103 F 1100 97.09 1342 reject_low 2 ALIGNMENT 0 Y12-3n11.p1k chr10 773 62 21230 21229 C 712 0.00 1350 reject_low 2 ALIGNMENT 787 Y12-3n11.p1k chr09 1202 74 20816 21951 C 1129 91.41 1350 ambiguous_tel 0 ALIGNMENT 222 Y12-3n11.p1k chr10 1202 774 20796 21229 C 429 85.55 1350 reject_low 2 ALIGNMENT 968 Y12-3n11.q1k chr09 38 1112 16998 18092 F 1075 97.58 1342 ambiguous_tel 0 ALIGNMENT 789 Y12-3n11.p1k chr15 1202 74 26571 27704 C 1129 91.50 1350 ambiguous_tel 1 ALIGNMENT 561 Y12-3n11.q1k chr07 38 1003 1067442 1068415 F 966 86.75 1342 reject_low 3 ALIGNMENT 940 Y12-3n11.q1k chr15 38 1137 22738 23860 F 1100 96.09 1342 ambiguous_tel 1 ALIGNMENT 0 Y12-3n12.q1k chr12 261 909 490543 490542 F 649 0.00 1387 reject_low 2 ALIGNMENT 979 Y12-3n12.p1k chr12 1201 16 464202 465401 C 1186 95.45 1336 accept 1 ALIGNMENT 216 Y12-3n12.q1k chr12 38 260 490321 490543 F 223 99.10 1387 reject_low 2 ALIGNMENT 979 Y12-3n12.p1k chr12 1201 16 455065 456264 C 1186 95.45 1336 accept 0 ALIGNMENT 1070 Y12-3n12.q1k chr12 38 1293 452353 453626 F 1256 95.46 1387 accept 0 ALIGNMENT 1070 Y12-3n12.q1k chr12 38 1293 461490 462763 F 1256 95.46 1387 accept 1 ALIGNMENT 938 Y12-3n13.p1k chr02 1172 17 414309 415483 C 1156 94.90 1367 accept 0 ALIGNMENT 200 Y12-3n13.p1k chr02 742 1172 168804 169250 F 431 83.99 1367 reject_low 1 ALIGNMENT 0 Y12-3n13.p1k chr02 62 741 168804 168803 F 680 0.00 1367 reject_low 1 ALIGNMENT 988 Y12-3n13.q1k chr02 39 1164 409942 411083 F 1126 97.07 1401 accept 0 ALIGNMENT 170 Y12-3n14.p1k chr04 40 406 1092348 1092710 F 367 83.65 1249 accept 0 ALIGNMENT 592 Y12-3n15.q1k chr04 722 27 1323766 1324461 C 696 96.26 1458 accept 0 ALIGNMENT 1003 Y12-3n15.p1k chr04 17 1231 1319126 1320351 F 1215 95.06 1388 accept 0 ALIGNMENT 990 Y12-3n16.q1k chr12 37 1145 702106 703220 F 1109 97.29 1361 accept 0 ALIGNMENT 949 Y12-3n16.p1k chr12 1244 19 705085 706332 C 1226 93.80 1369 accept 0 ALIGNMENT 47 Y12-3n17.q1k chr11 482 418 16192 16256 C 65 96.92 1343 reject_low 1 ALIGNMENT 771 Y12-3n17.q1k chrm 41 1118 58575 59678 F 1078 96.29 1343 accept 0 ALIGNMENT 0 Y12-3n17.p1k chrm 630 631 62864 62903 C 0 0.00 1342 accept 0 ALIGNMENT 0 Y12-3n17.q1k chr07 941 376 567851 567850 C 566 0.00 1343 reject_low 2 ALIGNMENT 0 Y12-3n17.q1k chr11 417 62 16257 16256 C 356 0.00 1343 reject_low 1 ALIGNMENT 0 Y12-3n17.q1k chr11 941 483 16193 16192 C 459 0.00 1343 reject_low 1 ALIGNMENT 351 Y12-3n17.p1k chrm 632 21 62902 63521 C 612 97.39 1342|2,0 accept 0 ALIGNMENT 40 Y12-3n17.q1k chr07 375 307 567850 567919 C 69 91.30 1343 reject_low 2 ALIGNMENT 146 Y12-3n17.p1k chrm 863 629 62631 62865 C 235 97.45 1342|0,2 accept 0 ALIGNMENT 0 Y12-3n17.q1k chr07 306 62 567920 567919 C 245 0.00 1343 reject_low 2 ALIGNMENT 0 Y12-3n18.q1k chr16 934 62 932562 932561 C 873 0.00 1354 reject_low 1 ALIGNMENT 0 Y12-3n18.q1k chr02 913 62 801722 801721 C 852 0.00 1354 accept 0 ALIGNMENT 125 Y12-3n18.q1k chr02 1202 914 801427 801721 C 289 83.04 1354 accept 0 ALIGNMENT 38 Y12-3n18.q1k chr16 1038 935 932459 932561 C 104 79.81 1354 reject_low 1 ALIGNMENT 1015 Y12-3n18.p1k chr02 17 1207 797772 798972 F 1191 96.14 1348 accept 0 ALIGNMENT 975 Y12-3n19.q1k chr08 38 1218 402511 403700 F 1181 95.26 1362 accept 0 ALIGNMENT 1000 Y12-3n19.p1k chr08 1237 18 406137 407368 C 1220 95.33 1332 accept 0 ALIGNMENT 545 Y12-3n20.p1k chr08 1052 271 406338 407117 C 782 91.43 1349 accept 0 ALIGNMENT 882 Y12-3n20.q1k chr08 38 1097 402511 403588 F 1060 95.85 1309 accept 0 ALIGNMENT 1001 Y12-3n21.p1k chr16 1203 19 822290 823479 C 1185 95.19 1300 accept 0 ALIGNMENT 224 Y12-3n21.p1k chr07 880 129 739949 740700 C 752 76.73 1300 reject_low 1 ALIGNMENT 0 Y12-3n21.p1k chr07 128 62 740701 740700 C 67 0.00 1300 reject_low 1 ALIGNMENT 1026 Y12-3n21.q1k chr16 41 1246 820460 821668 F 1206 96.19 1330 accept 0 ALIGNMENT 1025 Y12-3n22.p1k chr15 21 1272 742411 743665 F 1252 95.21 1313 accept 0 ALIGNMENT 902 Y12-3n22.q1k chr15 1157 37 745470 746604 C 1121 94.92 1300 accept 0 ALIGNMENT 945 Y12-3n23.q1k chr07 29 1096 211118 212201 F 1068 97.19 1275 accept 0 ALIGNMENT 1006 Y12-3n23.p1k chr07 1213 24 214998 216193 C 1190 95.71 1296 accept 0 ALIGNMENT 925 Y12-3n24.p1k chr16 20 1221 36106 37300 F 1202 94.18 1282 accept 0 ALIGNMENT 946 Y12-3n24.q1k chr16 1113 38 38814 39884 C 1076 97.12 1317 accept 0 ALIGNMENT 409 Y12-3o01.q1k chr12 667 38 466294 466905 C 630 90.63 1466 accept 1 ALIGNMENT 409 Y12-3o01.q1k chr12 667 38 457157 457768 C 630 90.63 1466 accept 0 ALIGNMENT 0 Y12-3o07.p1k chr15 355 374 98981 98980 F 20 0.00 1373 accept 0 ALIGNMENT 378 Y12-3o07.p1k chr15 375 885 98981 99497 F 511 92.37 1373 accept 0 ALIGNMENT 614 Y12-3o08.p1k chr11 1096 318 38493 39271 C 779 94.35 1349 accept 0 ALIGNMENT 561 Y12-3o08.q1k chr11 39 948 35149 36047 F 910 88.35 1387 accept 0 ALIGNMENT 511 Y12-3o09.p1k chr07 997 267 581900 582628 C 731 91.24 1400 accept 0 ALIGNMENT 693 Y12-3o10.p1k chr13 264 1091 61928 62768 F 828 95.89 1292 accept 0 ALIGNMENT 476 Y12-3o10.q1k chr13 1066 31 65157 66195 C 1036 83.88 1384 accept 0 ALIGNMENT 241 Y12-3o11.p1k chr14 232 563 96608 96941 F 332 93.07 1401 ambiguous_trans 9 ALIGNMENT 0 Y12-3o11.p1k chr13 564 851 362917 362916 F 288 0.00 1401 ambiguous_trans 13 ALIGNMENT 0 Y12-3o11.q1k chr04 863 143 808488 808487 C 721 0.00 1371 reject_low 5 ALIGNMENT 0 Y12-3o11.q1k chr04 863 200 808545 808544 C 664 0.00 1371 reject_low 4 ALIGNMENT 0 Y12-3o11.p1k chr01 233 62 189752 189751 C 172 0.00 1401 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-3o11.p1k chr16 232 62 560811 560810 C 171 0.00 1401 ambiguous_trans_ua 11 ALIGNMENT 971 Y12-3o11.q1k chr04 1217 43 807482 808643 C 1175 95.74 1371 accept 0 ALIGNMENT 234 Y12-3o11.p1k chr02 563 234 226624 226955 C 330 92.42 1401 ambiguous_trans 12 ALIGNMENT 0 Y12-3o11.p1k chr15 564 851 980586 980585 F 288 0.00 1401 ambiguous_trans_ua 15 ALIGNMENT 0 Y12-3o11.p1k chr02 851 564 226625 226624 C 288 0.00 1401 ambiguous_trans 12 ALIGNMENT 0 Y12-3o11.p1k chr07 233 62 932023 932022 C 172 0.00 1401 ambiguous_trans_ua 14 ALIGNMENT 29 Y12-3o11.q1k chr04 142 77 808487 808552 C 66 81.82 1371 reject_low 5 ALIGNMENT 21 Y12-3o11.p1k chr04 255 277 1151365 1151387 F 23 100.00 1401 ambiguous_trans_ua 30 ALIGNMENT 0 Y12-3o11.p1k chr12 62 253 215101 215100 F 192 0.00 1401 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-3o11.p1k chr07 851 564 931692 931691 C 288 0.00 1401 ambiguous_trans_ua 14 ALIGNMENT 0 Y12-3o11.p1k chr01 62 233 165827 165826 F 172 0.00 1401 ambiguous_trans 25 ALIGNMENT 0 Y12-3o11.p1k chr02 233 62 226956 226955 C 172 0.00 1401 ambiguous_trans 12 ALIGNMENT 197 Y12-3o11.p1k chr12 254 563 215101 215418 F 310 90.32 1401 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-3o11.p1k chr15 253 62 600715 600714 C 192 0.00 1401 ambiguous_trans 21 ALIGNMENT 0 Y12-3o11.p1k chr07 231 62 535549 535548 C 170 0.00 1401 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-3o11.p1k chr13 62 233 362586 362585 F 172 0.00 1401 ambiguous_trans 13 ALIGNMENT 191 Y12-3o11.p1k chr01 234 563 165827 166163 F 330 88.18 1401 ambiguous_trans 25 ALIGNMENT 0 Y12-3o11.p1k chr15 253 62 595133 595132 C 192 0.00 1401 ambiguous_trans 3 ALIGNMENT 0 Y12-3o11.p1k chr13 851 564 184171 184170 C 288 0.00 1401 ambiguous_trans 20 ALIGNMENT 240 Y12-3o11.p1k chr14 234 563 102192 102523 F 330 93.03 1401 ambiguous_trans 10 ALIGNMENT 0 Y12-3o11.p1k chr01 1012 62 163531 163530 C 951 0.00 1401 ambiguous_trans 1 ALIGNMENT 0 Y12-3o11.p1k chr07 62 253 817418 817417 F 192 0.00 1401 ambiguous_trans 19 ALIGNMENT 0 Y12-3o11.p1k chr14 62 233 102192 102191 F 172 0.00 1401 ambiguous_trans 10 ALIGNMENT 223 Y12-3o11.p1k chr07 254 563 817418 817729 F 310 92.90 1401 ambiguous_trans 19 ALIGNMENT 0 Y12-3o11.p1k chr13 253 62 184482 184481 C 192 0.00 1401 ambiguous_trans 20 ALIGNMENT 203 Y12-3o11.p1k chr01 563 233 183136 183469 C 331 89.43 1401 ambiguous_trans_ua 22 ALIGNMENT 0 Y12-3o11.p1k chr02 233 62 221374 221373 C 172 0.00 1401 ambiguous_trans 16 ALIGNMENT 0 Y12-3o11.p1k chr08 62 230 116413 116412 F 169 0.00 1401 ambiguous_trans_ua 7 ALIGNMENT 0 Y12-3o11.p1k chr15 62 232 980254 980253 F 171 0.00 1401 ambiguous_trans_ua 15 ALIGNMENT 0 Y12-3o11.p1k chr08 564 851 116747 116746 F 288 0.00 1401 ambiguous_trans_ua 7 ALIGNMENT 0 Y12-3o11.p1k chr13 564 851 357335 357334 F 288 0.00 1401 ambiguous_trans 8 ALIGNMENT 0 Y12-3o11.p1k chr14 851 564 102550 102549 C 288 0.00 1401 ambiguous_trans_ua 29 ALIGNMENT 226 Y12-3o11.p1k chr15 569 254 594815 595132 C 316 92.72 1401 ambiguous_trans 3 ALIGNMENT 73 Y12-3o11.p1k chr01 1124 1013 163416 163530 C 112 90.18 1401 ambiguous_trans 1 ALIGNMENT 29 Y12-3o11.p1k chr14 563 534 102549 102578 C 30 100.00 1401 ambiguous_trans_ua 29 ALIGNMENT 0 Y12-3o11.p1k chr04 851 564 1151032 1151031 C 288 0.00 1401 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-3o11.p1k chr14 564 851 96941 96940 F 288 0.00 1401 ambiguous_trans 9 ALIGNMENT 0 Y12-3o11.p1k chr07 851 355 817292 817291 C 497 0.00 1401 ambiguous_trans 28 ALIGNMENT 0 Y12-3o11.p1k chr15 851 570 594816 594815 C 282 0.00 1401 ambiguous_trans 3 ALIGNMENT 0 Y12-3o11.p1k chr01 851 564 189421 189420 C 288 0.00 1401 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-3o11.p1k chr15 851 564 600404 600403 C 288 0.00 1401 ambiguous_trans 21 ALIGNMENT 0 Y12-3o11.q1k chr04 76 62 808553 808552 C 15 0.00 1371 reject_low 5 ALIGNMENT 0 Y12-3o11.p1k chr14 62 231 96608 96607 F 170 0.00 1401 ambiguous_trans 9 ALIGNMENT 236 Y12-3o11.p1k chr13 231 563 357001 357335 F 333 92.49 1401 ambiguous_trans 8 ALIGNMENT 236 Y12-3o11.p1k chr08 231 563 116413 116747 F 333 92.49 1401 ambiguous_trans_ua 7 ALIGNMENT 95 Y12-3o11.p1k chr01 563 234 189420 189751 C 330 79.70 1401 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-3o11.p1k chr08 62 253 549326 549325 F 192 0.00 1401 ambiguous_trans 18 ALIGNMENT 0 Y12-3o11.p1k chr04 278 851 1151387 1151386 F 574 0.00 1401 ambiguous_trans_ua 30 ALIGNMENT 0 Y12-3o11.q1k chr04 133 62 808610 808609 C 72 0.00 1371 reject_low 4 ALIGNMENT 223 Y12-3o11.p1k chr13 563 254 184170 184481 C 310 92.90 1401 ambiguous_trans 20 ALIGNMENT 0 Y12-3o11.p1k chr01 232 62 183470 183469 C 171 0.00 1401 ambiguous_trans_ua 22 ALIGNMENT 0 Y12-3o11.p1k chr14 564 851 102523 102522 F 288 0.00 1401 ambiguous_trans 10 ALIGNMENT 45 Y12-3o11.p1k chr07 354 257 817291 817387 C 98 84.69 1401 ambiguous_trans 28 ALIGNMENT 0 Y12-3o11.p1k chr15 317 62 594760 594759 C 256 0.00 1401 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-3o11.p1k chr07 256 62 817388 817387 C 195 0.00 1401 ambiguous_trans 28 ALIGNMENT 0 Y12-3o11.p1k chr08 565 851 549638 549637 F 287 0.00 1401 ambiguous_trans 18 ALIGNMENT 236 Y12-3o11.p1k chr04 563 227 1151031 1151367 C 337 91.99 1401 ambiguous_trans_ua 2 ALIGNMENT 0 Y12-3o11.p1k chr11 564 851 458114 458113 F 288 0.00 1401 ambiguous_trans_ua 17 ALIGNMENT 223 Y12-3o11.p1k chr15 563 254 600403 600714 C 310 92.90 1401 ambiguous_trans 21 ALIGNMENT 0 Y12-3o11.p1k chr07 851 566 535214 535213 C 286 0.00 1401 ambiguous_trans_ua 6 ALIGNMENT 191 Y12-3o11.p1k chr01 234 563 160239 160575 F 330 88.18 1401 ambiguous_trans 24 ALIGNMENT 234 Y12-3o11.p1k chr13 234 563 362586 362917 F 330 92.42 1401 ambiguous_trans 13 ALIGNMENT 0 Y12-3o11.p1k chr04 226 62 1151368 1151367 C 165 0.00 1401 ambiguous_trans_ua 2 ALIGNMENT 234 Y12-3o11.p1k chr07 565 232 535213 535548 C 334 92.22 1401 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-3o11.p1k chr12 564 851 215418 215417 F 288 0.00 1401 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-3o11.p1k chr01 851 564 183137 183136 C 288 0.00 1401 ambiguous_trans_ua 22 ALIGNMENT 224 Y12-3o11.p1k chr02 564 234 221039 221373 C 331 91.54 1401 ambiguous_trans 16 ALIGNMENT 0 Y12-3o11.p1k chr01 564 851 166163 166162 F 288 0.00 1401 ambiguous_trans 25 ALIGNMENT 0 Y12-3o11.p1k chr02 851 565 221040 221039 C 287 0.00 1401 ambiguous_trans 16 ALIGNMENT 221 Y12-3o11.p1k chr08 254 564 549326 549638 F 311 92.60 1401 ambiguous_trans 18 ALIGNMENT 0 Y12-3o11.p1k chr04 62 254 1151365 1151364 F 193 0.00 1401 ambiguous_trans_ua 30 ALIGNMENT 29 Y12-3o11.q1k chr04 199 134 808544 808609 C 66 81.82 1371 reject_low 4 ALIGNMENT 0 Y12-3o11.p1k chr13 62 230 357001 357000 F 169 0.00 1401 ambiguous_trans 8 ALIGNMENT 71 Y12-3o11.p1k chr15 446 318 594630 594759 C 129 87.60 1401 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-3o11.p1k chr01 62 233 160239 160238 F 172 0.00 1401 ambiguous_trans 24 ALIGNMENT 0 Y12-3o11.p1k chr11 62 232 457782 457781 F 171 0.00 1401 ambiguous_trans_ua 17 ALIGNMENT 0 Y12-3o11.p1k chr14 533 62 102579 102578 C 472 0.00 1401 ambiguous_trans_ua 29 ALIGNMENT 228 Y12-3o11.p1k chr15 233 563 980254 980586 F 331 91.84 1401 ambiguous_trans_ua 15 ALIGNMENT 0 Y12-3o11.p1k chr07 564 851 817729 817728 F 288 0.00 1401 ambiguous_trans 19 ALIGNMENT 0 Y12-3o11.p1k chr15 851 447 594631 594630 C 405 0.00 1401 ambiguous_trans_ua 27 ALIGNMENT 225 Y12-3o11.p1k chr11 233 563 457782 458114 F 331 91.54 1401 ambiguous_trans_ua 17 ALIGNMENT 0 Y12-3o11.p1k chr01 564 851 160575 160574 F 288 0.00 1401 ambiguous_trans 24 ALIGNMENT 234 Y12-3o11.p1k chr16 563 233 560478 560810 C 331 92.45 1401 ambiguous_trans_ua 11 ALIGNMENT 231 Y12-3o11.p1k chr07 563 234 931691 932022 C 330 92.12 1401 ambiguous_trans_ua 14 ALIGNMENT 0 Y12-3o11.p1k chr16 851 564 560479 560478 C 288 0.00 1401 ambiguous_trans_ua 11 ALIGNMENT 882 Y12-3o12.p1k chr04 23 1030 1168345 1169354 F 1008 96.92 1299 accept 0 ALIGNMENT 663 Y12-3o12.q1k chr04 790 38 1171719 1172472 C 753 97.34 1429 accept 0 ALIGNMENT 973 Y12-3o13.q1k chr16 1280 36 440429 441681 C 1245 94.54 1374 ambiguous_trans 2 ALIGNMENT 979 Y12-3o13.q1k chr08 36 1280 86963 88216 F 1245 94.86 1374 ambiguous_trans 1 ALIGNMENT 924 Y12-3o13.p1k chr08 1101 27 89832 90907 C 1075 97.40 1415 ambiguous_trans 1 ALIGNMENT 936 Y12-3o13.p1k chr10 1101 27 201764 202839 C 1075 97.77 1415 ambiguous_trans 0 ALIGNMENT 961 Y12-3o13.q1k chr10 36 1280 198895 200148 F 1245 94.38 1374 ambiguous_trans 0 ALIGNMENT 924 Y12-3o13.p1k chr16 27 1101 437737 438812 F 1075 97.40 1415 ambiguous_trans 2 ALIGNMENT 0 Y12-3o15.p1k chr04 827 641 1402174 1402173 C 187 0.00 1369 reject_low 1 ALIGNMENT 0 Y12-3o15.p1k chr04 256 62 1402557 1402556 C 195 0.00 1369 reject_low 1 ALIGNMENT 264 Y12-3o15.p1k chr04 640 257 1402173 1402556 C 384 89.84 1369 reject_low 1 ALIGNMENT 937 Y12-3o15.p1k chr08 1115 17 126617 127725 C 1099 96.54 1369 accept 0 ALIGNMENT 1037 Y12-3o15.q1k chr08 30 1241 123753 124977 F 1212 96.12 1345 accept 0 ALIGNMENT 950 Y12-3o16.p1k chr05 1159 21 353140 354282 C 1139 95.87 1311 accept 0 ALIGNMENT 1060 Y12-3o16.q1k chr05 39 1256 348645 349867 F 1218 96.39 1366 accept 0 ALIGNMENT 0 Y12-3o17.p1k chr04 62 786 668091 668090 F 725 0.00 1359 reject_low 17 ALIGNMENT 177 Y12-3o17.p1k chr11 1038 787 202366 202629 C 252 92.46 1359 reject_low 4 ALIGNMENT 0 Y12-3o17.p1k chr14 62 786 546739 546738 F 725 0.00 1359 reject_low 7 ALIGNMENT 0 Y12-3o17.p1k chr08 786 62 146665 146664 C 725 0.00 1359 reject_low 14 ALIGNMENT 157 Y12-3o17.p1k chr16 797 1034 856551 856800 F 238 91.18 1359 reject_low 15 ALIGNMENT 177 Y12-3o17.p1k chr07 787 1034 707199 707457 F 248 92.74 1359 reject_low 6 ALIGNMENT 1010 Y12-3o17.q1k chr04 36 1204 1458398 1459562 F 1169 96.49 1343 accept 0 ALIGNMENT 147 Y12-3o17.p1k chr04 786 1028 1023130 1023383 F 243 89.30 1359 reject_low 18 ALIGNMENT 143 Y12-3o17.p1k chr14 787 1034 726235 726494 F 248 88.31 1359 reject_low 19 ALIGNMENT 0 Y12-3o17.p1k chr04 62 785 1023130 1023129 F 724 0.00 1359 reject_low 18 ALIGNMENT 0 Y12-3o17.p1k chr16 62 786 769317 769316 F 725 0.00 1359 reject_low 12 ALIGNMENT 180 Y12-3o17.p1k chr09 781 1034 205211 205475 F 254 92.52 1359 reject_low 3 ALIGNMENT 175 Y12-3o17.p1k chr14 787 1028 546739 546990 F 242 92.98 1359 reject_low 7 ALIGNMENT 0 Y12-3o17.p1k chr15 62 786 854273 854272 F 725 0.00 1359 reject_low 13 ALIGNMENT 0 Y12-3o17.p1k chr09 62 780 205211 205210 F 719 0.00 1359 reject_low 3 ALIGNMENT 121 Y12-3o17.p1k chr07 1005 781 405237 405461 C 225 87.56 1359 reject_low 21 ALIGNMENT 0 Y12-3o17.p1k chr16 62 796 856551 856550 F 735 0.00 1359 reject_low 15 ALIGNMENT 0 Y12-3o17.p1k chr02 62 780 197712 197711 F 719 0.00 1359 reject_low 8 ALIGNMENT 0 Y12-3o17.p1k chr14 62 786 726235 726234 F 725 0.00 1359 reject_low 19 ALIGNMENT 145 Y12-3o17.p1k chr03 789 995 168386 168595 F 207 91.79 1359 reject_low 20 ALIGNMENT 0 Y12-3o17.p1k chr05 786 62 434968 434967 C 725 0.00 1359 reject_low 11 ALIGNMENT 0 Y12-3o17.p1k chr12 62 786 374000 373999 F 725 0.00 1359 reject_low 16 ALIGNMENT 160 Y12-3o17.p1k chr02 781 1028 197712 197969 F 248 90.73 1359 reject_low 8 ALIGNMENT 161 Y12-3o17.p1k chr04 1038 787 946025 946289 C 252 90.48 1359 reject_low 9 ALIGNMENT 177 Y12-3o17.p1k chr01 787 1034 182614 182872 F 248 92.74 1359 reject_low 5 ALIGNMENT 0 Y12-3o17.p1k chr04 786 62 946290 946289 C 725 0.00 1359 reject_low 9 ALIGNMENT 161 Y12-3o17.p1k chr15 787 1034 854273 854532 F 248 90.73 1359 reject_low 13 ALIGNMENT 159 Y12-3o17.p1k chr08 1028 787 146412 146664 C 242 90.91 1359 reject_low 14 ALIGNMENT 158 Y12-3o17.p1k chr05 1038 787 434703 434967 C 252 90.08 1359 reject_low 11 ALIGNMENT 0 Y12-3o17.p1k chr07 786 62 319766 319765 C 725 0.00 1359 reject_low 10 ALIGNMENT 891 Y12-3o17.p1k chr09 26 1051 209545 210584 F 1026 97.37 1359 ambiguous_trans 1 ALIGNMENT 0 Y12-3o17.p1k chr07 62 786 707199 707198 F 725 0.00 1359 reject_low 6 ALIGNMENT 159 Y12-3o17.p1k chr07 1038 787 319502 319765 C 252 90.08 1359 reject_low 10 ALIGNMENT 0 Y12-3o17.p1k chr07 780 62 405462 405461 C 719 0.00 1359 reject_low 21 ALIGNMENT 155 Y12-3o17.p1k chr04 787 1034 668091 668350 F 248 89.92 1359 reject_low 17 ALIGNMENT 0 Y12-3o17.p1k chr03 62 788 168386 168385 F 727 0.00 1359 reject_low 20 ALIGNMENT 0 Y12-3o17.p1k chr01 62 786 182614 182613 F 725 0.00 1359 reject_low 5 ALIGNMENT 157 Y12-3o17.p1k chr12 787 1028 374000 374251 F 242 90.50 1359 reject_low 16 ALIGNMENT 164 Y12-3o17.p1k chr16 787 1034 769317 769576 F 248 91.13 1359 reject_low 12 ALIGNMENT 897 Y12-3o17.p1k chr07 26 1034 711449 712468 F 1009 97.92 1359 ambiguous_trans 2 ALIGNMENT 0 Y12-3o17.p1k chr11 786 62 202630 202629 C 725 0.00 1359 reject_low 4 ALIGNMENT 987 Y12-3o18.p1k chr15 22 1163 989985 991150 F 1142 96.76 1287 accept 0 ALIGNMENT 900 Y12-3o18.q1k chr15 1218 19 992726 993911 C 1200 93.83 1364 accept 0 ALIGNMENT 881 Y12-3o19.p1k chr09 90 1245 274122 275280 F 1156 92.65 1447 accept 0 ALIGNMENT 993 Y12-3o19.q1k chr09 1193 38 278778 279946 C 1156 96.45 1319 accept 0 ALIGNMENT 1013 Y12-3o21.p1k chr06 25 1152 42700 43835 F 1128 98.14 1383 accept 0 ALIGNMENT 1013 Y12-3o21.q1k chr06 1212 39 47751 48925 C 1174 96.25 1303 accept 0 ALIGNMENT 0 Y12-3o22.q1k chr12 62 691 489754 489753 F 630 0.00 1297 reject_low 2 ALIGNMENT 1018 Y12-3o22.p1k chr12 1258 23 454542 455769 C 1236 95.23 1293 reject_low 1 ALIGNMENT 897 Y12-3o22.q1k chr12 35 1296 460243 461527 F 1262 91.76 1297 accept 0 ALIGNMENT 1021 Y12-3o22.p1k chr12 1266 23 463672 464906 C 1244 95.18 1293 accept 0 ALIGNMENT 656 Y12-3o22.q1k chr12 344 1296 451419 452390 F 953 90.98 1297 reject_low 1 ALIGNMENT 0 Y12-3o22.q1k chr12 62 343 451419 451418 F 282 0.00 1297 reject_low 1 ALIGNMENT 362 Y12-3o22.q1k chr12 692 1180 489754 490247 F 489 91.82 1297 reject_low 2 ALIGNMENT 902 Y12-3o23.p1k chr01 38 1136 120702 121787 F 1099 95.45 1434 accept 0 ALIGNMENT 967 Y12-3o23.q1k chr01 1236 43 122565 123758 C 1194 95.06 1262 accept 0 ALIGNMENT 529 Y12-3p01.p1k chr16 277 1017 292317 293057 F 741 91.90 1315 accept 0 ALIGNMENT 699 Y12-3p01.q1k chr16 918 30 295589 296455 C 889 94.71 1361 accept 0 ALIGNMENT 930 Y12-3p02.q1k chr01 33 1248 143403 144608 F 1216 93.50 1324 accept 0 ALIGNMENT 649 Y12-3p02.p1k chr01 1077 302 146581 147356 C 776 96.01 1325 accept 0 ALIGNMENT 740 Y12-3p03.p1k chr10 1251 264 497790 498764 C 988 93.02 1319 accept 0 ALIGNMENT 930 Y12-3p03.q1k chr10 34 1222 493407 494585 F 1189 94.70 1374 accept 0 ALIGNMENT 128 Y12-3p04.p1k chr12 846 713 489348 489481 C 134 98.51 1270 reject_low 2 ALIGNMENT 0 Y12-3p04.p1k chr12 727 62 472583 472582 C 666 0.00 1270 reject_low 3 ALIGNMENT 119 Y12-3p04.p1k chr12 846 728 482044 482162 C 119 100.00 1270 reject_low 4 ALIGNMENT 972 Y12-3p04.q1k chr12 36 1185 466021 467197 F 1150 96.09 1321 reject_low 1 ALIGNMENT 119 Y12-3p04.p1k chr12 846 728 485696 485814 C 119 100.00 1270 reject_low 5 ALIGNMENT 0 Y12-3p04.p1k chr12 727 62 485815 485814 C 666 0.00 1270 reject_low 5 ALIGNMENT 0 Y12-3p04.p1k chr12 727 62 468931 468930 C 666 0.00 1270 reject_low 1 ALIGNMENT 119 Y12-3p04.p1k chr12 846 728 472464 472582 C 119 100.00 1270 reject_low 3 ALIGNMENT 0 Y12-3p04.p1k chr12 712 62 489482 489481 C 651 0.00 1270 reject_low 2 ALIGNMENT 0 Y12-3p04.p1k chr12 727 62 482163 482162 C 666 0.00 1270 reject_low 4 ALIGNMENT 972 Y12-3p04.q1k chr12 36 1185 456884 458060 F 1150 96.09 1321 accept 0 ALIGNMENT 191 Y12-3p04.p1k chr12 1132 728 468514 468930 C 405 83.95 1270 reject_low 1 ALIGNMENT 587 Y12-3p04.p1k chr12 1049 30 459465 460525 C 1020 87.45 1270 accept 0 ALIGNMENT 813 Y12-3p05.q1k chr02 1162 35 38294 39415 C 1128 92.91 1392 accept_trans 0 ALIGNMENT 618 Y12-3p05.p1k chr02 261 963 28932 29631 F 703 96.02 1346 accept_trans 0 ALIGNMENT 75 Y12-3p06.p1k chr13 30 214 45127 45304 F 185 83.24 1120 accept 0 ALIGNMENT 569 Y12-3p12.p1k chr05 1014 276 218853 219596 C 739 92.69 1348 accept 0 ALIGNMENT 929 Y12-3p15.q1k chr15 1173 41 306757 307915 C 1133 95.23 1344 accept 0 ALIGNMENT 0 Y12-3p15.p1k chr15 414 861 427955 427954 F 448 0.00 1300 reject_low 1 ALIGNMENT 0 Y12-3p15.p1k chr08 62 384 365400 365399 F 323 0.00 1300 reject_low 4 ALIGNMENT 0 Y12-3p15.p1k chr15 62 384 428014 428013 F 323 0.00 1300 reject_low 2 ALIGNMENT 22 Y12-3p15.p1k chr08 385 413 365400 365428 F 29 93.10 1300 reject_low 4 ALIGNMENT 24 Y12-3p15.p1k chr15 386 413 427928 427955 F 28 96.43 1300 reject_low 1 ALIGNMENT 23 Y12-3p15.p1k chr15 385 411 428014 428040 F 27 96.30 1300 reject_low 2 ALIGNMENT 0 Y12-3p15.p1k chr08 414 861 365386 365385 F 448 0.00 1300 reject_low 3 ALIGNMENT 0 Y12-3p15.p1k chr08 414 861 365428 365427 F 448 0.00 1300 reject_low 4 ALIGNMENT 938 Y12-3p15.p1k chr15 31 1107 301908 302998 F 1077 96.56 1300 accept 0 ALIGNMENT 23 Y12-3p15.p1k chr08 387 413 365360 365386 F 27 96.30 1300 reject_low 3 ALIGNMENT 0 Y12-3p15.p1k chr15 412 861 428040 428039 F 450 0.00 1300 reject_low 2 ALIGNMENT 0 Y12-3p15.p1k chr08 62 386 365360 365359 F 325 0.00 1300 reject_low 3 ALIGNMENT 0 Y12-3p15.p1k chr15 62 385 427928 427927 F 324 0.00 1300 reject_low 1 ALIGNMENT 1000 Y12-3p16.q1k chr12 35 1274 706334 707588 F 1240 94.84 1366 accept 0 ALIGNMENT 941 Y12-3p16.p1k chr12 1172 18 709170 710334 C 1155 95.50 1301 accept 0 ALIGNMENT 634 Y12-3p17.p1k chr10 1089 272 647070 647877 C 818 92.91 1367 accept 0 ALIGNMENT 976 Y12-3p19.p1k chr09 1182 21 179939 181114 C 1162 95.78 1296 accept 0 ALIGNMENT 0 Y12-3p19.q1k chr04 437 848 1385508 1385507 F 412 0.00 1309 reject_low 1 ALIGNMENT 962 Y12-3p19.q1k chr09 33 1146 177099 178228 F 1114 96.05 1309 accept 0 ALIGNMENT 0 Y12-3p19.q1k chr04 62 395 1385468 1385467 F 334 0.00 1309 reject_low 1 ALIGNMENT 21 Y12-3p19.q1k chr04 396 436 1385468 1385508 F 41 90.24 1309 reject_low 1 ALIGNMENT 970 Y12-3p20.p1k chr02 18 1187 126597 127776 F 1170 95.90 1295 accept 0 ALIGNMENT 956 Y12-3p20.q1k chr02 1197 41 130391 131576 C 1157 95.76 1309 accept 0 ALIGNMENT 230 Y12-3p21.q1k chr14 36 681 321905 322548 F 646 79.10 1366 accept 0 ALIGNMENT 439 Y12-3p21.p1k chr14 1085 335 326364 327112 C 751 88.28 1320 accept 0 ALIGNMENT 679 Y12-3p23.p1k chr04 1263 260 1221721 1222726 C 1004 90.74 1271 accept 0 ALIGNMENT 940 Y12-4a01.q1k chr05 1099 30 20445 21515 C 1070 96.92 1353 accept_tel 0 ALIGNMENT 877 Y12-4a01.q1k chr14 30 1099 774373 775444 F 1070 94.86 1353 reject_low 1 ALIGNMENT 978 Y12-4a02.q1k chr07 1183 38 500088 501249 C 1146 96.68 1391 accept 0 ALIGNMENT 975 Y12-4a02.p1k chr07 25 1311 496546 497832 F 1287 94.41 1440 accept 0 ALIGNMENT 1007 Y12-4a03.q1k chr14 38 1215 99464 100655 F 1178 96.35 1373 ambiguous_trans 3 ALIGNMENT 910 Y12-4a03.p1k chr05 1109 21 432268 433367 C 1089 95.41 1329 accept 0 ALIGNMENT 997 Y12-4a03.q1k chr01 38 1215 163098 164290 F 1178 96.10 1373 ambiguous_trans 22 ALIGNMENT 998 Y12-4a03.q1k chr08 38 1215 546464 547655 F 1178 96.10 1373 ambiguous_trans 19 ALIGNMENT 1004 Y12-4a03.q1k chr16 38 1215 807497 808688 F 1178 96.26 1373 ambiguous_trans 13 ALIGNMENT 1007 Y12-4a03.q1k chr15 1215 38 119576 120767 C 1178 96.10 1373 ambiguous_trans 4 ALIGNMENT 1004 Y12-4a03.q1k chr04 38 1215 648353 649544 F 1178 96.26 1373 ambiguous_trans 6 ALIGNMENT 1004 Y12-4a03.q1k chr07 38 1215 564703 565894 F 1178 96.26 1373 ambiguous_trans 8 ALIGNMENT 1004 Y12-4a03.q1k chr13 1215 38 186038 187229 C 1178 96.01 1373 ambiguous_trans 10 ALIGNMENT 1013 Y12-4a03.q1k chr02 1215 38 222910 224101 C 1178 96.26 1373 ambiguous_trans 1 ALIGNMENT 994 Y12-4a03.q1k chr16 1215 38 846282 847476 C 1178 95.76 1373 ambiguous_trans 23 ALIGNMENT 1004 Y12-4a03.q1k chr02 1215 38 261444 262635 C 1178 96.01 1373 ambiguous_trans 5 ALIGNMENT 1004 Y12-4a03.q1k chr12 38 1215 217941 219132 F 1178 96.26 1373 ambiguous_trans_ua 9 ALIGNMENT 1001 Y12-4a03.q1k chr04 38 1215 989575 990766 F 1178 96.18 1373 ambiguous_trans 14 ALIGNMENT 1001 Y12-4a03.q1k chr04 1215 38 1097636 1098827 C 1178 95.93 1373 ambiguous_trans 15 ALIGNMENT 1001 Y12-4a03.q1k chr05 38 1215 495351 496542 F 1178 96.18 1373 ambiguous_trans 16 ALIGNMENT 1004 Y12-4a03.q1k chr13 1215 38 198205 199396 C 1178 96.01 1373 ambiguous_trans 11 ALIGNMENT 1004 Y12-4a03.q1k chr04 38 1215 881154 882345 F 1178 96.26 1373 ambiguous_trans 7 ALIGNMENT 1004 Y12-4a03.q1k chr13 38 1215 359858 361049 F 1178 96.26 1373 ambiguous_trans 12 ALIGNMENT 998 Y12-4a03.q1k chr15 1215 38 596689 597880 C 1178 95.84 1373 ambiguous_trans 21 ALIGNMENT 980 Y12-4a03.q1k chr16 38 1215 853485 854676 F 1178 95.59 1373 ambiguous_trans 24 ALIGNMENT 1001 Y12-4a03.q1k chr13 38 1215 375556 376747 F 1178 96.18 1373 ambiguous_trans 18 ALIGNMENT 1001 Y12-4a03.q1k chr10 1215 38 479835 481026 C 1178 95.93 1373 ambiguous_trans 17 ALIGNMENT 998 Y12-4a03.q1k chr10 1215 38 474251 475442 C 1178 95.84 1373 ambiguous_trans 20 ALIGNMENT 1007 Y12-4a03.q1k chr05 38 1215 446252 447443 F 1178 96.35 1373 ambiguous_trans 2 ALIGNMENT 917 Y12-4a05.q1k chr07 1107 38 302559 303637 C 1070 96.36 1350 accept 0 ALIGNMENT 1003 Y12-4a05.p1k chr07 21 1179 299576 300755 F 1159 96.55 1413 accept 0 ALIGNMENT 0 Y12-4a06.p1k chr12 255 899 687934 687933 F 645 0.00 1380 reject_low 10 ALIGNMENT 0 Y12-4a06.p1k chr13 62 173 586628 586627 F 112 0.00 1380 reject_low 7 ALIGNMENT 0 Y12-4a06.p1k chr10 899 255 378277 378276 C 645 0.00 1380 reject_low 5 ALIGNMENT 0 Y12-4a06.p1k chr05 899 255 438697 438696 C 645 0.00 1380 reject_low 4 ALIGNMENT 0 Y12-4a06.p1k chr07 174 62 823567 823566 C 113 0.00 1380 reject_low 9 ALIGNMENT 0 Y12-4a06.p1k chr11 899 255 379324 379323 C 645 0.00 1380 reject_low 11 ALIGNMENT 0 Y12-4a06.p1k chr15 62 181 663813 663812 F 120 0.00 1380 reject_low 13 ALIGNMENT 0 Y12-4a06.p1k chr12 62 174 687855 687854 F 113 0.00 1380 reject_low 10 ALIGNMENT 78 Y12-4a06.p1k chr13 174 255 586628 586709 F 82 98.78 1380 reject_low 7 ALIGNMENT 0 Y12-4a06.p1k chr11 62 171 307780 307779 F 110 0.00 1380 reject_low 3 ALIGNMENT 78 Y12-4a06.p1k chr07 255 175 823486 823566 C 81 98.77 1380 reject_low 9 ALIGNMENT 83 Y12-4a06.p1k chr07 164 255 73810 73902 F 92 97.83 1380 reject_low 2 ALIGNMENT 83 Y12-4a06.p1k chr13 174 267 372437 372529 F 94 96.81 1380 reject_low 1 ALIGNMENT 0 Y12-4a06.p1k chr07 256 899 73902 73901 F 644 0.00 1380 reject_low 2 ALIGNMENT 0 Y12-4a06.p1k chr07 256 899 412371 412370 F 644 0.00 1380 reject_low 8 ALIGNMENT 217 Y12-4a06.p1k chr08 22 271 85131 85384 F 250 97.20 1380 accept_trans 0 ALIGNMENT 0 Y12-4a06.p1k chr05 899 257 469451 469450 C 643 0.00 1380 reject_low 6 ALIGNMENT 0 Y12-4a06.p1k chr07 62 174 412291 412290 F 113 0.00 1380 reject_low 8 ALIGNMENT 0 Y12-4a06.p1k chr10 173 62 378357 378356 C 112 0.00 1380 reject_low 5 ALIGNMENT 77 Y12-4a06.p1k chr12 175 254 687855 687934 F 80 98.75 1380 reject_low 10 ALIGNMENT 0 Y12-4a06.p1k chr11 256 899 307863 307862 F 644 0.00 1380 reject_low 3 ALIGNMENT 0 Y12-4a06.p1k chr08 272 442 85385 92123 F 171 0.00 1380 accept_trans 0 ALIGNMENT 0 Y12-4a06.p1k chr13 62 175 420582 420581 F 114 0.00 1380 reject_low 12 ALIGNMENT 82 Y12-4a06.p1k chr05 254 172 438696 438778 C 83 100.00 1380 reject_low 4 ALIGNMENT 0 Y12-4a06.p1k chr13 268 899 372529 372528 F 632 0.00 1380 reject_low 1 ALIGNMENT 74 Y12-4a06.p1k chr15 182 255 663813 663886 F 74 100.00 1380 reject_low 13 ALIGNMENT 0 Y12-4a06.p1k chr13 256 899 586709 586708 F 644 0.00 1380 reject_low 7 ALIGNMENT 78 Y12-4a06.p1k chr07 175 255 412291 412371 F 81 98.77 1380 reject_low 8 ALIGNMENT 539 Y12-4a06.p1k chr08 443 1154 92124 92849 F 712 93.68 1380 accept_trans 0 ALIGNMENT 76 Y12-4a06.p1k chr13 176 254 420582 420660 F 79 98.73 1380 reject_low 12 ALIGNMENT 77 Y12-4a06.p1k chr11 254 178 379323 379399 C 77 100.00 1380 reject_low 11 ALIGNMENT 0 Y12-4a06.p1k chr11 177 62 379400 379399 C 116 0.00 1380 reject_low 11 ALIGNMENT 0 Y12-4a06.p1k chr07 62 163 73810 73809 F 102 0.00 1380 reject_low 2 ALIGNMENT 83 Y12-4a06.p1k chr11 172 255 307780 307863 F 84 100.00 1380 reject_low 3 ALIGNMENT 0 Y12-4a06.p1k chr05 171 62 438779 438778 C 110 0.00 1380 reject_low 4 ALIGNMENT 0 Y12-4a06.p1k chr13 62 173 372437 372436 F 112 0.00 1380 reject_low 1 ALIGNMENT 0 Y12-4a06.p1k chr13 255 899 420660 420659 F 645 0.00 1380 reject_low 12 ALIGNMENT 0 Y12-4a06.p1k chr15 256 899 663886 663885 F 644 0.00 1380 reject_low 13 ALIGNMENT 0 Y12-4a06.p1k chr07 899 256 823487 823486 C 644 0.00 1380 reject_low 9 ALIGNMENT 78 Y12-4a06.p1k chr05 256 175 469450 469531 C 82 98.78 1380 reject_low 6 ALIGNMENT 81 Y12-4a06.p1k chr10 254 174 378276 378356 C 81 100.00 1380 reject_low 5 ALIGNMENT 0 Y12-4a06.p1k chr05 174 62 469532 469531 C 113 0.00 1380 reject_low 6 ALIGNMENT 957 Y12-4a08.q1k chr02 1191 32 345407 346582 C 1160 94.91 1361 accept 0 ALIGNMENT 0 Y12-4a08.p1k chr04 62 577 508185 508184 F 516 0.00 1400 reject_low 1 ALIGNMENT 1015 Y12-4a08.p1k chr02 22 1184 342585 343758 F 1163 97.25 1400 accept 0 ALIGNMENT 196 Y12-4a08.p1k chr04 578 1068 508185 508675 F 491 80.45 1400 reject_low 1 ALIGNMENT 1056 Y12-4a09.q1k chr16 1256 41 68526 69749 C 1216 96.46 1356 accept 0 ALIGNMENT 1012 Y12-4a09.p1k chr16 20 1204 65785 66977 F 1185 96.20 1417 accept 0 ALIGNMENT 886 Y12-4a10.q1k chr08 1118 36 282791 283879 C 1083 94.64 1356 accept 0 ALIGNMENT 1008 Y12-4a10.p1k chr08 14 1250 279599 280859 F 1237 95.63 1415 accept 0 ALIGNMENT 498 Y12-4a12.q1k chr07 715 33 220289 220980 C 683 92.39 1064 accept_chi 1 ALIGNMENT 951 Y12-4a12.p1k chr02 16 1169 512865 514039 F 1154 96.10 1383 accept_chi 0 ALIGNMENT 949 Y12-4a13.q1k chr15 23 1119 733611 734720 F 1097 95.62 1325 accept 0 ALIGNMENT 1006 Y12-4a13.p1k chr15 1217 22 737506 738716 C 1196 96.49 1378 accept 0 ALIGNMENT 997 Y12-4a14.q1k chr12 1233 40 743401 744597 C 1194 95.90 1434 accept 0 ALIGNMENT 1057 Y12-4a14.p1k chr12 20 1270 740685 741937 F 1251 95.84 1424 accept 0 ALIGNMENT 939 Y12-4a15.q1k chr12 37 1125 904361 905470 F 1089 97.25 1295 accept 0 ALIGNMENT 1034 Y12-4a15.p1k chr12 1213 20 908179 909382 C 1194 96.90 1372 accept 0 ALIGNMENT 1038 Y12-4a16.q1k chr13 36 1217 578255 579445 F 1182 97.38 1414 accept 0 ALIGNMENT 1030 Y12-4a16.p1k chr13 1148 31 581087 582213 C 1118 98.21 1377 accept 0 ALIGNMENT 0 Y12-4a17.q1k chr01 265 62 31520 31519 C 204 0.00 1327 reject_low 1 ALIGNMENT 1061 Y12-4a17.q1k chr02 1192 36 149433 150597 C 1157 97.93 1327 accept 0 ALIGNMENT 20 Y12-4a17.q1k chr02 266 291 353620 353645 F 26 100.00 1327 reject_low 2 ALIGNMENT 0 Y12-4a17.q1k chr01 881 292 31495 31494 C 590 0.00 1327 reject_low 1 ALIGNMENT 20 Y12-4a17.q1k chr01 291 266 31494 31519 C 26 100.00 1327 reject_low 1 ALIGNMENT 0 Y12-4a17.q1k chr02 292 881 353645 353644 F 590 0.00 1327 reject_low 2 ALIGNMENT 0 Y12-4a17.q1k chr02 62 265 353620 353619 F 204 0.00 1327 reject_low 2 ALIGNMENT 1039 Y12-4a17.p1k chr02 16 1228 145909 147123 F 1213 96.62 1394 accept 0 ALIGNMENT 989 Y12-4a18.q1k chr04 36 1183 853076 854237 F 1148 96.43 1356 accept 0 ALIGNMENT 980 Y12-4a18.p1k chr04 1115 24 857432 858540 C 1092 97.62 1342 accept 0 ALIGNMENT 668 Y12-4a19.q1k chr04 964 39 95349 96294 C 926 92.55 1276 accept 0 ALIGNMENT 918 Y12-4a19.p1k chr04 23 1095 91672 92756 F 1073 97.39 1314 accept 0 ALIGNMENT 1084 Y12-4a20.p1k chr13 1292 20 78512 79793 C 1273 96.39 1360 accept 0 ALIGNMENT 997 Y12-4a20.q1k chr13 35 1198 75326 76496 F 1164 96.05 1326 accept 0 ALIGNMENT 0 Y12-4a21.p1k chr09 62 1073 197587 197586 F 1012 0.00 1311 reject_low 1 ALIGNMENT 941 Y12-4a21.q1k chr04 21 1143 1013628 1014735 F 1123 96.08 1294 accept 0 ALIGNMENT 0 Y12-4a21.p1k chr12 62 1075 797178 797177 F 1014 0.00 1311 reject_low 2 ALIGNMENT 971 Y12-4a21.p1k chr04 1273 18 1017061 1018333 C 1256 94.59 1311 accept 0 ALIGNMENT 55 Y12-4a21.p1k chr09 1074 1160 197587 197674 F 87 88.51 1311 reject_low 1 ALIGNMENT 37 Y12-4a21.p1k chr12 1076 1130 797178 797232 F 55 89.09 1311 reject_low 2 ALIGNMENT 1037 Y12-4a24.q1k chr12 34 1187 461607 462769 F 1154 96.97 1278 accept 1 ALIGNMENT 95 Y12-4a24.q1k chr12 34 140 490438 490543 F 107 97.20 1278 reject_low 2 ALIGNMENT 1037 Y12-4a24.q1k chr12 34 1187 452470 453632 F 1154 96.97 1278 accept 0 ALIGNMENT 0 Y12-4a24.q1k chr12 141 885 490543 490542 F 745 0.00 1278 reject_low 2 ALIGNMENT 1039 Y12-4a24.p1k chr12 1234 20 455600 456842 C 1215 96.13 1240 accept 0 ALIGNMENT 1039 Y12-4a24.p1k chr12 1234 20 464737 465979 C 1215 96.13 1240 accept 1 ALIGNMENT 973 Y12-4b02.q1k chr02 27 1131 227515 228627 F 1105 97.38 1387 accept 0 ALIGNMENT 1029 Y12-4b02.p1k chr02 1254 27 230546 231785 C 1228 95.36 1405 accept 0 ALIGNMENT 933 Y12-4b03.p1k chr14 1134 17 161244 162384 C 1118 96.24 1356 accept 0 ALIGNMENT 966 Y12-4b03.q1k chr14 37 1206 158111 159294 F 1170 94.96 1460 accept 0 ALIGNMENT 1070 Y12-4b04.p1k chr16 22 1214 833162 834359 F 1193 97.15 1390 accept 0 ALIGNMENT 1004 Y12-4b05.p1k chr16 1144 22 836150 837277 C 1123 97.42 1433 accept 0 ALIGNMENT 1064 Y12-4b06.p1k chr13 1253 19 640235 641474 C 1235 95.79 1414 accept 0 ALIGNMENT 1047 Y12-4b06.q1k chr13 35 1204 637469 638647 F 1170 96.92 1423 accept 0 ALIGNMENT 972 Y12-4b07.q1k chr15 1218 35 53383 54579 C 1184 95.78 1356 accept 0 ALIGNMENT 951 Y12-4b07.p1k chr15 18 1161 49926 51081 F 1144 95.80 1363 accept 0 ALIGNMENT 1004 Y12-4b08.p1k chr08 21 1218 195266 196481 F 1198 95.83 1417 accept_chi 0 ALIGNMENT 882 Y12-4b08.q1k chr01 39 1067 83556 84595 F 1029 96.11 1355 accept_chi 1 ALIGNMENT 1010 Y12-4b09.p1k chr12 1173 23 118166 119331 C 1151 97.22 1398 accept 0 ALIGNMENT 983 Y12-4b09.q1k chr12 39 1248 115022 116243 F 1210 93.47 1391 accept 0 ALIGNMENT 874 Y12-4b10.q1k chr14 1015 27 277714 278716 C 989 97.37 1307 accept 0 ALIGNMENT 974 Y12-4b10.p1k chr14 20 1147 274071 275221 F 1128 96.63 1366 accept 0 ALIGNMENT 1000 Y12-4b11.p1k chr13 24 1258 895560 896808 F 1235 94.49 1396 accept_chi 0 ALIGNMENT 209 Y12-4b11.q1k chr04 218 510 822267 822549 F 293 93.52 1183 accept_chi 1 ALIGNMENT 977 Y12-4b12.p1k chr11 17 1153 269927 271077 F 1137 96.13 1358 accept 0 ALIGNMENT 966 Y12-4b12.q1k chr11 1159 37 272753 273887 C 1123 95.90 1374 accept 0 ALIGNMENT 0 Y12-4b13.p1k chr02 434 62 68315 68314 C 373 0.00 1379 accept 0 ALIGNMENT 1037 Y12-4b13.q1k chr02 35 1237 65678 66893 F 1203 95.43 1433 accept 0 ALIGNMENT 0 Y12-4b13.p1k chr02 905 470 68317 68316 C 436 0.00 1379 reject_low 1 ALIGNMENT 24 Y12-4b13.q1k chr02 337 288 464124 464173 C 50 90.00 1433 reject_low 2 ALIGNMENT 0 Y12-4b13.q1k chr02 929 338 464125 464124 C 592 0.00 1433 reject_low 2 ALIGNMENT 417 Y12-4b13.p1k chr02 469 17 68316 68770 C 453 99.56 1379 reject_low 1 ALIGNMENT 606 Y12-4b13.p1k chr02 1202 435 67531 68314 C 768 95.31 1379 accept 0 ALIGNMENT 0 Y12-4b13.q1k chr02 287 62 464174 464173 C 226 0.00 1433 reject_low 2 ALIGNMENT 850 Y12-4b15.p1k chr12 1064 15 460210 461282 C 1050 94.76 1389 reject_bad_break 0 ALIGNMENT 334 Y12-4b15.p1k chr12 373 15 489754 490113 C 359 98.05 1389 reject_low 2 ALIGNMENT 0 Y12-4b15.p1k chr12 863 722 451420 451419 C 142 0.00 1389 reject_low 1 ALIGNMENT 27 Y12-4b15.p1k chr12 1185 1067 460071 460191 C 119 78.15 1389 reject_bad_break 0 ALIGNMENT 0 Y12-4b15.p1k chr12 1066 1065 460192 460209 C 2 0.00 1389 reject_bad_break 0 ALIGNMENT 0 Y12-4b15.p1k chr12 863 374 489755 489754 C 490 0.00 1389 reject_low 2 ALIGNMENT 623 Y12-4b15.p1k chr12 721 15 451419 452145 C 707 96.75 1389 reject_low 1 ALIGNMENT 950 Y12-4b17.q1k chr02 34 1182 283930 285094 F 1149 95.74 1347 accept 0 ALIGNMENT 1029 Y12-4b17.p1k chr02 1216 20 288664 289868 C 1197 96.24 1376 accept 0 ALIGNMENT 66 Y12-4b18.p1k chr12 1039 850 365949 366139 C 190 81.58 1350 reject_low 1 ALIGNMENT 0 Y12-4b18.p1k chr14 908 761 602314 602313 C 148 0.00 1350 reject_low 12 ALIGNMENT 0 Y12-4b18.p1k chr05 62 961 138336 138335 F 900 0.00 1350 reject_low 6 ALIGNMENT 79 Y12-4b18.p1k chr02 761 680 197496 197577 C 82 98.78 1350 reject_low 7 ALIGNMENT 0 Y12-4b18.p1k chr12 62 678 1052060 1052059 F 617 0.00 1350 reject_low 10 ALIGNMENT 0 Y12-4b18.p1k chr09 62 678 183429 183428 F 617 0.00 1350 reject_low 2 ALIGNMENT 79 Y12-4b18.p1k chr09 760 678 210662 210745 C 83 98.80 1350 reject_low 8 ALIGNMENT 0 Y12-4b18.p1k chr05 62 671 443181 443180 F 610 0.00 1350 reject_low 3 ALIGNMENT 0 Y12-4b18.p1k chr16 676 62 819610 819609 C 615 0.00 1350 reject_low 9 ALIGNMENT 1017 Y12-4b18.p1k chr05 19 1181 550611 551787 F 1163 97.25 1350 accept 0 ALIGNMENT 0 Y12-4b18.p1k chr09 908 761 210663 210662 C 148 0.00 1350 reject_low 8 ALIGNMENT 35 Y12-4b18.p1k chr09 1014 961 197317 197371 C 54 92.59 1350 reject_low 16 ALIGNMENT 0 Y12-4b18.p1k chr09 960 62 197372 197371 C 899 0.00 1350 reject_low 16 ALIGNMENT 77 Y12-4b18.p1k chr16 760 677 819525 819609 C 84 97.62 1350 reject_low 9 ALIGNMENT 0 Y12-4b18.p1k chr02 679 62 197578 197577 C 618 0.00 1350 reject_low 7 ALIGNMENT 0 Y12-4b18.p1k chr14 678 62 602395 602394 C 617 0.00 1350 reject_low 12 ALIGNMENT 76 Y12-4b18.p1k chr16 679 760 880284 880365 F 82 97.56 1350 reject_low 13 ALIGNMENT 35 Y12-4b18.p1k chr12 1088 958 1052385 1052518 C 131 79.39 1350 reject_low 5 ALIGNMENT 76 Y12-4b18.p1k chr12 679 760 1052060 1052141 F 82 97.56 1350 reject_low 10 ALIGNMENT 0 Y12-4b18.p1k chr09 771 908 183520 183519 F 138 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-4b18.p1k chr12 761 908 1052141 1052140 F 148 0.00 1350 reject_low 10 ALIGNMENT 28 Y12-4b18.p1k chr05 962 1111 138336 138492 F 150 76.67 1350 reject_low 6 ALIGNMENT 0 Y12-4b18.p1k chr16 908 761 819526 819525 C 148 0.00 1350 reject_low 9 ALIGNMENT 81 Y12-4b18.p1k chr05 672 760 443181 443271 F 89 97.75 1350 reject_low 3 ALIGNMENT 0 Y12-4b18.p1k chr02 908 762 197497 197496 C 147 0.00 1350 reject_low 7 ALIGNMENT 76 Y12-4b18.p1k chr04 682 760 667997 668075 F 79 98.73 1350 reject_low 14 ALIGNMENT 0 Y12-4b18.p1k chr07 686 62 739201 739200 C 625 0.00 1350 reject_low 15 ALIGNMENT 77 Y12-4b18.p1k chr09 679 770 183429 183520 F 92 94.57 1350 reject_low 2 ALIGNMENT 0 Y12-4b18.p1k chr16 761 908 880365 880364 F 148 0.00 1350 reject_low 13 ALIGNMENT 76 Y12-4b18.p1k chr14 760 679 602313 602394 C 82 97.56 1350 reject_low 12 ALIGNMENT 0 Y12-4b18.p1k chr04 761 908 668075 668074 F 148 0.00 1350 reject_low 14 ALIGNMENT 76 Y12-4b18.p1k chr14 679 760 569860 569941 F 82 97.56 1350 reject_low 11 ALIGNMENT 75 Y12-4b18.p1k chr07 761 687 739126 739200 C 75 100.00 1350 reject_low 15 ALIGNMENT 0 Y12-4b18.p1k chr05 761 908 443271 443270 F 148 0.00 1350 reject_low 3 ALIGNMENT 0 Y12-4b18.p1k chr16 62 678 880284 880283 F 617 0.00 1350 reject_low 13 ALIGNMENT 0 Y12-4b18.p1k chr07 908 762 739127 739126 C 147 0.00 1350 reject_low 15 ALIGNMENT 0 Y12-4b18.p1k chr14 761 908 569941 569940 F 148 0.00 1350 reject_low 11 ALIGNMENT 78 Y12-4b18.p1k chr12 760 671 734804 734893 C 90 95.56 1350 reject_low 4 ALIGNMENT 0 Y12-4b18.p1k chr12 849 62 366140 366139 C 788 0.00 1350 reject_low 1 ALIGNMENT 0 Y12-4b18.p1k chr14 62 678 569860 569859 F 617 0.00 1350 reject_low 11 ALIGNMENT 0 Y12-4b18.p1k chr12 908 761 734805 734804 C 148 0.00 1350 reject_low 4 ALIGNMENT 1008 Y12-4b18.q1k chr05 1212 38 553077 554259 C 1175 95.23 1385 accept 0 ALIGNMENT 0 Y12-4b18.p1k chr12 957 62 1052519 1052518 C 896 0.00 1350 reject_low 5 ALIGNMENT 0 Y12-4b18.p1k chr04 62 681 667997 667996 F 620 0.00 1350 reject_low 14 ALIGNMENT 0 Y12-4b18.p1k chr09 677 62 210746 210745 C 616 0.00 1350 reject_low 8 ALIGNMENT 0 Y12-4b18.p1k chr12 670 62 734894 734893 C 609 0.00 1350 reject_low 4 ALIGNMENT 1003 Y12-4b19.p1k chr04 1212 16 1132462 1133680 C 1197 96.32 1324 accept 0 ALIGNMENT 766 Y12-4b19.q1k chr04 32 977 1128504 1129462 F 946 94.40 1315 accept 0 ALIGNMENT 702 Y12-4b20.q1k chr11 917 36 248196 249085 C 882 93.31 1330 accept 0 ALIGNMENT 1047 Y12-4b20.p1k chr11 22 1250 244326 245565 F 1229 96.18 1346 accept 0 ALIGNMENT 109 Y12-4b23.q1k chr02 241 399 171628 171779 F 159 89.31 1228 accept 0 ALIGNMENT 1019 Y12-4b23.p1k chr02 1135 22 175832 176961 C 1114 98.20 1240 accept 0 ALIGNMENT 1056 Y12-4b24.p1k chr14 19 1220 212237 213449 F 1202 97.17 1272 accept 0 ALIGNMENT 1020 Y12-4b24.q1k chr14 1303 38 215599 216874 C 1266 94.63 1309 accept 0 ALIGNMENT 616 Y12-4c02.p1k chr02 981 299 547199 547892 C 683 97.95 1296 accept 0 ALIGNMENT 992 Y12-4c02.q1k chr02 36 1211 543023 544208 F 1176 94.98 1392 accept 0 ALIGNMENT 958 Y12-4c03.p1k chr12 19 1084 408891 409973 F 1066 97.47 1399 accept 0 ALIGNMENT 860 Y12-4c03.q1k chr12 1219 29 412464 413637 C 1191 92.78 1371 accept 0 ALIGNMENT 1005 Y12-4c04.q1k chr15 1189 32 383433 384609 C 1158 96.63 1393 accept 0 ALIGNMENT 999 Y12-4c04.p1k chr15 20 1176 380582 381748 F 1157 95.94 1387 accept 0 ALIGNMENT 949 Y12-4c05.q1k chr12 1112 39 920834 921923 C 1074 96.09 1339 accept 0 ALIGNMENT 982 Y12-4c05.p1k chr12 19 1139 916243 917384 F 1121 97.15 1397 accept 0 ALIGNMENT 872 Y12-4c06.q1k chr13 1082 35 601477 602539 C 1048 94.85 1288 accept 0 ALIGNMENT 1015 Y12-4c06.p1k chr13 15 1160 597686 598840 F 1146 97.21 1396 accept 0 ALIGNMENT 622 Y12-4c06.q1k chr13 938 35 599424 600329 C 904 89.60 1288 reject_low 1 ALIGNMENT 968 Y12-4c07.q1k chr05 39 1247 89863 91086 F 1209 94.38 1355 accept 0 ALIGNMENT 1039 Y12-4c07.p1k chr05 1253 22 92728 93972 C 1232 95.78 1450 accept 0 ALIGNMENT 864 Y12-4c08.q1k chr13 1084 36 370257 371310 C 1049 95.71 1351 accept 0 ALIGNMENT 878 Y12-4c08.p1k chr13 15 1108 367473 368587 F 1094 94.42 1364 accept 0 ALIGNMENT 977 Y12-4c09.q1k chr16 1191 36 399077 400256 C 1156 96.37 1339 accept 0 ALIGNMENT 1050 Y12-4c09.p1k chr16 20 1175 396127 397292 F 1156 97.92 1407 accept 0 ALIGNMENT 979 Y12-4c10.q1k chr05 32 1180 54301 55463 F 1149 96.78 1382 accept 0 ALIGNMENT 941 Y12-4c10.p1k chr05 1096 21 58734 59825 C 1076 97.49 1400 accept 0 ALIGNMENT 0 Y12-4c11.q1k chr10 77 777 11347 11346 F 701 0.00 1296 reject_low 2 ALIGNMENT 20 Y12-4c11.q1k chr10 778 808 11347 11377 F 31 100.00 1296 reject_low 2 ALIGNMENT 811 Y12-4c11.q1k chr10 39 1077 666392 667442 F 1039 94.13 1296 accept_chi 1 ALIGNMENT 964 Y12-4c11.p1k chr13 19 1123 270742 271865 F 1105 97.47 1392 accept_chi 0 ALIGNMENT 970 Y12-4c13.p1k chr07 19 1086 230583 231657 F 1068 98.41 1348 accept 0 ALIGNMENT 958 Y12-4c13.q1k chr07 1162 35 234732 235873 C 1128 95.57 1351 accept 0 ALIGNMENT 447 Y12-4c14.p1k chr15 738 26 193631 194339 C 713 88.36 1459 accept 0 ALIGNMENT 1055 Y12-4c17.p1k chr09 1298 20 41106 42395 C 1279 95.07 1401 accept 0 ALIGNMENT 943 Y12-4c17.q1k chr09 38 1163 37206 38350 F 1126 95.12 1329 accept 0 ALIGNMENT 899 Y12-4c18.q1k chr07 1175 35 48066 49204 C 1141 93.25 1452 accept 0 ALIGNMENT 662 Y12-4c18.p1k chr07 13 888 44640 45517 F 876 93.04 1369 accept 0 ALIGNMENT 951 Y12-4c19.q1k chr14 35 1242 139667 140887 F 1208 93.87 1318 accept 0 ALIGNMENT 0 Y12-4c19.p1k chr14 131 132 144084 144143 C 0 0.00 1357 accept 0 ALIGNMENT 88 Y12-4c19.p1k chr14 131 24 144144 144250 C 108 98.15 1357 accept 0 ALIGNMENT 872 Y12-4c19.p1k chr14 1181 131 143019 144084 C 1051 95.62 1357|0,1 accept 0 ALIGNMENT 1015 Y12-4c20.p1k chr12 22 1184 839003 840186 F 1163 96.65 1323 accept 0 ALIGNMENT 1027 Y12-4c21.p1k chr04 19 1199 1143102 1144292 F 1181 96.53 1309 accept 0 ALIGNMENT 1029 Y12-4c21.q1k chr04 1192 30 1147018 1148183 C 1163 97.33 1301 accept 0 ALIGNMENT 1064 Y12-4c22.p1k chr15 18 1314 518504 519800 F 1297 95.53 1350 accept 0 ALIGNMENT 0 Y12-4c23.p1k chr12 62 563 108978 108977 F 502 0.00 1304 reject_low 1 ALIGNMENT 0 Y12-4c23.p1k chr12 761 62 109204 109203 C 700 0.00 1304 reject_low 2 ALIGNMENT 348 Y12-4c23.p1k chr12 564 980 108978 109398 F 417 95.44 1304 reject_low 1 ALIGNMENT 0 Y12-4c23.p1k chr12 809 790 109177 109176 C 20 0.00 1304 reject_low 2 ALIGNMENT 25 Y12-4c23.p1k chr12 789 762 109176 109203 C 28 100.00 1304 reject_low 2 ALIGNMENT 994 Y12-4c23.p1k chr12 19 1228 108432 109649 F 1210 94.63 1304 accept 0 ALIGNMENT 995 Y12-4c24.p1k chr10 1170 16 436690 437830 C 1155 96.80 1336 accept 0 ALIGNMENT 1033 Y12-4c24.q1k chr10 32 1242 433100 434327 F 1211 96.20 1301 accept 0 ALIGNMENT 0 Y12-4d01.p1k chr16 62 581 1663 1662 F 520 0.00 1382 reject_low 176 ALIGNMENT 0 Y12-4d01.p1k chr12 888 838 1076291 1076290 C 51 0.00 1382 reject_low 194 ALIGNMENT 51 Y12-4d01.p1k chr12 798 930 1683 1815 F 133 79.70 1382 reject_low 250 ALIGNMENT 0 Y12-4d01.p1k chr16 689 62 946495 946494 C 628 0.00 1382 reject_low 108 ALIGNMENT 49 Y12-4d01.p1k chr08 696 582 560439 560553 C 115 83.48 1382 reject_low 276 ALIGNMENT 87 Y12-4d01.p1k chr15 790 593 1089229 1089426 C 198 83.33 1382 reject_low 217 ALIGNMENT 0 Y12-4d01.p1k chr12 693 694 1070023 1076289 C 0 0.00 1382 reject_low 317 ALIGNMENT 117 Y12-4d01.p1k chr04 898 585 1530064 1530377 C 314 80.89 1382 reject_low 152 ALIGNMENT 169 Y12-4d01.p1k chr04 903 582 1530095 1530416 C 322 86.02 1382 reject_low 104 ALIGNMENT 735 Y12-4d01.p1k chr04 986 32 1530086 1531038 C 955 92.77 1382 reject_low 5 ALIGNMENT 0 Y12-4d01.p1k chr05 581 62 575030 575029 C 520 0.00 1382 reject_low 264 ALIGNMENT 201 Y12-4d01.p1k chr09 582 899 1722 2039 F 318 89.62 1382 reject_low 76 ALIGNMENT 0 Y12-4d01.p1k chr07 888 755 1088971 1088970 C 134 0.00 1382 reject_low 228 ALIGNMENT 79 Y12-4d01.p1k chr06 618 837 893 1112 F 220 80.91 1382 reject_low 326 ALIGNMENT 0 Y12-4d01.p1k chr05 761 62 575318 575317 C 700 0.00 1382 reject_low 235 ALIGNMENT 0 Y12-4d01.p1k chr13 62 581 1955 1954 F 520 0.00 1382 reject_low 267 ALIGNMENT 153 Y12-4d01.p1k chr16 933 690 946251 946494 C 244 88.52 1382 reject_low 108 ALIGNMENT 129 Y12-4d01.p1k chr08 654 903 1651 1900 F 250 85.60 1382 reject_low 136 ALIGNMENT 90 Y12-4d01.p1k chr06 690 903 893 1106 F 214 82.24 1382 reject_low 202 ALIGNMENT 0 Y12-4d01.p1k chr07 797 62 1089395 1089394 C 736 0.00 1382 reject_low 256 ALIGNMENT 0 Y12-4d01.p1k chr06 858 857 1097 1144 F 0 0.00 1382 reject_low 327 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 1719 1718 F 520 0.00 1382 reject_low 47 ALIGNMENT 0 Y12-4d01.p1k chr02 838 888 1993 1992 F 51 0.00 1382 reject_low 167 ALIGNMENT 0 Y12-4d01.p1k chr05 584 62 575207 575206 C 523 0.00 1382 reject_low 144 ALIGNMENT 98 Y12-4d01.p1k chr15 837 585 1089254 1089506 C 253 81.82 1382 reject_low 195 ALIGNMENT 202 Y12-4d01.p1k chr10 582 919 1849 2186 F 338 88.17 1382 reject_low 63 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1069739 1069738 C 520 0.00 1382 reject_low 274 ALIGNMENT 135 Y12-4d01.p1k chr10 593 827 1932 2166 F 235 88.09 1382 reject_low 134 ALIGNMENT 229 Y12-4d01.p1k chr05 930 582 574933 575281 C 349 89.97 1382 reject_low 33 ALIGNMENT 0 Y12-4d01.p1k chr16 62 592 1710 1709 F 531 0.00 1382 reject_low 211 ALIGNMENT 90 Y12-4d01.p1k chr12 593 790 7553 7750 F 198 83.84 1382 reject_low 208 ALIGNMENT 0 Y12-4d01.p1k chr13 62 581 1847 1846 F 520 0.00 1382 reject_low 174 ALIGNMENT 30 Y12-4d01.p1k chr05 581 734 1901 2054 F 154 75.32 1382 reject_low 312 ALIGNMENT 90 Y12-4d01.p1k chr16 593 790 1710 1907 F 198 83.84 1382 reject_low 211 ALIGNMENT 0 Y12-4d01.p1k chr05 62 592 1805 1804 F 531 0.00 1382 reject_low 222 ALIGNMENT 0 Y12-4d01.p1k chr12 62 592 1874 1873 F 531 0.00 1382 reject_low 85 ALIGNMENT 0 Y12-4d01.p1k chr12 838 888 2190 2189 F 51 0.00 1382 reject_low 181 ALIGNMENT 0 Y12-4d01.p1k chr15 888 647 1089230 1089229 C 242 0.00 1382 reject_low 304 ALIGNMENT 0 Y12-4d01.p1k chr12 888 827 1069603 1069602 C 62 0.00 1382 reject_low 188 ALIGNMENT 63 Y12-4d01.p1k chr05 899 762 575180 575317 C 138 83.33 1382 reject_low 235 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946459 946458 C 520 0.00 1382 reject_low 45 ALIGNMENT 0 Y12-4d01.p1k chr08 792 888 1932 1931 F 97 0.00 1382 reject_low 220 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 1830 1829 F 520 0.00 1382 reject_low 79 ALIGNMENT 0 Y12-4d01.p1k chr04 580 62 1530130 1530129 C 519 0.00 1382 reject_low 295 ALIGNMENT 0 Y12-4d01.p1k chr07 617 62 1089395 1089394 C 556 0.00 1382 reject_low 65 ALIGNMENT 0 Y12-4d01.q1k chr08 895 800 3744 3743 C 96 0.00 1412 reject_low 16 ALIGNMENT 120 Y12-4d01.p1k chr12 585 898 7437 7750 F 314 81.21 1382 reject_low 146 ALIGNMENT 760 Y12-4d01.p1k chr12 20 987 1118 2086 F 968 93.39 1382 reject_low 11 ALIGNMENT 0 Y12-4d01.p1k chr13 62 580 2026 2025 F 519 0.00 1382 reject_low 302 ALIGNMENT 0 Y12-4d01.p1k chr12 580 62 1076439 1076438 C 519 0.00 1382 reject_low 325 ALIGNMENT 99 Y12-4d01.p1k chr04 826 582 1530064 1530308 C 245 82.45 1382 reject_low 187 ALIGNMENT 64 Y12-4d01.p1k chr12 581 754 2042 2215 F 174 81.03 1382 reject_low 324 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1722 1721 F 520 0.00 1382 reject_low 150 ALIGNMENT 55 Y12-4d01.p1k chr05 798 933 1470 1605 F 136 80.15 1382 reject_low 224 ALIGNMENT 226 Y12-4d01.p1k chr12 930 582 1069642 1069990 C 349 89.68 1382 reject_low 41 ALIGNMENT 211 Y12-4d01.p1k chr12 582 930 1719 2067 F 349 88.25 1382 reject_low 47 ALIGNMENT 76 Y12-4d01.p1k chr12 762 965 1683 1883 F 204 80.39 1382 reject_low 163 ALIGNMENT 0 Y12-4d01.p1k chr04 888 791 1530065 1530064 C 98 0.00 1382 reject_low 215 ALIGNMENT 105 Y12-4d01.p1k chr08 762 949 1651 1838 F 188 85.64 1382 reject_low 124 ALIGNMENT 0 Y12-4d01.p1k chr12 697 725 2194 7325 F 29 0.00 1382 reject_low 320 ALIGNMENT 111 Y12-4d01.p1k chr09 726 899 1686 1859 F 174 89.66 1382 reject_low 161 ALIGNMENT 0 Y12-4d01.p1k chr16 653 62 946495 946494 C 592 0.00 1382 reject_low 116 ALIGNMENT 43 Y12-4d01.p1k chr02 582 688 1918 2024 F 107 82.24 1382 reject_low 280 ALIGNMENT 0 Y12-4d01.p1k chr12 888 647 1076266 1076265 C 242 0.00 1382 reject_low 301 ALIGNMENT 0 Y12-4d01.p1k chr13 62 584 1778 1777 F 523 0.00 1382 reject_low 147 ALIGNMENT 135 Y12-4d01.p1k chr14 690 987 1574 1869 F 298 82.89 1382 reject_low 59 ALIGNMENT 214 Y12-4d01.p1k chr16 930 582 946110 946458 C 349 88.54 1382 reject_low 45 ALIGNMENT 0 Y12-4d01.p1k chr12 62 584 7437 7436 F 523 0.00 1382 reject_low 146 ALIGNMENT 0 Y12-4d01.p1k chr05 592 62 574983 574982 C 531 0.00 1382 reject_low 282 ALIGNMENT 0 Y12-4d01.p1k chr12 62 592 2018 2017 F 531 0.00 1382 reject_low 322 ALIGNMENT 46 Y12-4d01.p1k chr06 869 1021 892 1044 F 153 79.08 1382 reject_low 24 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1069955 1069954 C 520 0.00 1382 reject_low 105 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1506 1505 F 520 0.00 1382 reject_low 27 ALIGNMENT 0 Y12-4d01.p1k chr15 888 838 1089255 1089254 C 51 0.00 1382 reject_low 195 ALIGNMENT 0 Y12-4d01.p1k chr10 818 888 2192 2191 F 71 0.00 1382 reject_low 135 ALIGNMENT 157 Y12-4d01.p1k chr16 972 618 946143 946494 C 355 82.82 1382 reject_low 78 ALIGNMENT 154 Y12-4d01.p1k chr12 618 972 1683 2034 F 355 82.54 1382 reject_low 83 ALIGNMENT 63 Y12-4d01.p1k chr08 754 582 560417 560589 C 173 80.92 1382 reject_low 244 ALIGNMENT 162 Y12-4d01.p1k chr15 930 654 1089377 1089653 C 277 87.36 1382 reject_low 101 ALIGNMENT 0 Y12-4d01.p1k chr12 580 62 1069776 1069775 C 519 0.00 1382 reject_low 246 ALIGNMENT 0 Y12-4d01.p1k chr07 581 62 1089323 1089322 C 520 0.00 1382 reject_low 90 ALIGNMENT 0 Y12-4d01.p1k chr12 62 580 2042 2041 F 519 0.00 1382 reject_low 324 ALIGNMENT 0 Y12-4d01.p1k chr05 807 888 2054 2053 F 82 0.00 1382 reject_low 225 ALIGNMENT 66 Y12-4d01.p1k chr02 762 949 1486 1673 F 188 78.72 1382 reject_low 204 ALIGNMENT 763 Y12-4d01.p1k chr09 32 933 1136 2037 F 902 95.23 1382 ambiguous_tel 2 ALIGNMENT 0 Y12-4d01.p1k chr04 888 755 1530065 1530064 C 134 0.00 1382 reject_low 245 ALIGNMENT 147 Y12-4d01.p1k chr08 930 654 560565 560841 C 277 85.56 1382 reject_low 113 ALIGNMENT 0 Y12-4d01.p1k chr15 584 62 1089543 1089542 C 523 0.00 1382 reject_low 155 ALIGNMENT 162 Y12-4d01.p1k chr12 618 972 7326 7677 F 355 83.66 1382 reject_low 66 ALIGNMENT 893 Y12-4d01.q1k chr14 1140 36 4616 5756 C 1105 93.85 1412 reject_low 8 ALIGNMENT 0 Y12-4d01.p1k chr07 581 62 1089215 1089214 C 520 0.00 1382 reject_low 171 ALIGNMENT 0 Y12-4d01.p1k chr15 653 62 1089654 1089653 C 592 0.00 1382 reject_low 101 ALIGNMENT 0 Y12-4d01.p1k chr14 62 581 1610 1609 F 520 0.00 1382 reject_low 37 ALIGNMENT 160 Y12-4d01.p1k chr04 972 618 1530137 1530488 C 355 83.10 1382 reject_low 72 ALIGNMENT 0 Y12-4d01.p1k chr09 62 592 2021 2020 F 531 0.00 1382 reject_low 169 ALIGNMENT 0 Y12-4d01.p1k chr02 62 761 1486 1485 F 700 0.00 1382 reject_low 204 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 2065 2064 F 520 0.00 1382 reject_low 271 ALIGNMENT 87 Y12-4d01.p1k chr04 790 593 1530064 1530261 C 198 83.33 1382 reject_low 215 ALIGNMENT 0 Y12-4d01.p1k chr12 797 791 1070027 1076264 C 7 0.00 1382 reject_low 323 ALIGNMENT 0 Y12-4d01.p1k chr05 584 62 575171 575170 C 523 0.00 1382 reject_low 179 ALIGNMENT 162 Y12-4d01.p1k chr14 618 972 1574 1925 F 355 83.66 1382 reject_low 68 ALIGNMENT 0 Y12-4d01.p1k chr07 888 661 1088993 1088992 C 228 0.00 1382 reject_low 283 ALIGNMENT 175 Y12-4d01.p1k chr10 582 972 1777 2164 F 391 83.12 1382 reject_low 50 ALIGNMENT 229 Y12-4d01.p1k chr16 582 930 1519 1867 F 349 89.97 1382 reject_low 38 ALIGNMENT 0 Y12-4d01.p1k chr08 661 888 1909 1908 F 228 0.00 1382 reject_low 293 ALIGNMENT 99 Y12-4d01.p1k chr15 826 582 1089229 1089473 C 245 82.45 1382 reject_low 190 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 1866 1865 F 520 0.00 1382 reject_low 51 ALIGNMENT 0 Y12-4d01.p1k chr15 761 62 1089654 1089653 C 700 0.00 1382 reject_low 241 ALIGNMENT 33 Y12-4d01.p1k chr16 646 581 945962 946027 C 66 84.85 1382 reject_low 306 ALIGNMENT 98 Y12-4d01.p1k chr12 837 585 1076290 1076542 C 253 81.82 1382 reject_low 194 ALIGNMENT 172 Y12-4d01.p1k chr16 582 903 1555 1876 F 322 86.34 1382 reject_low 94 ALIGNMENT 0 Y12-4d01.p1k chr12 888 827 1076266 1076265 C 62 0.00 1382 reject_low 189 ALIGNMENT 0 Y12-4d01.p1k chr12 761 62 1076690 1076689 C 700 0.00 1382 reject_low 238 ALIGNMENT 0 Y12-4d01.p1k chr12 584 62 1076543 1076542 C 523 0.00 1382 reject_low 194 ALIGNMENT 0 Y12-4d01.p1k chr12 888 755 1069603 1069602 C 134 0.00 1382 reject_low 246 ALIGNMENT 0 Y12-4d01.p1k chr12 888 697 1069625 1069624 C 192 0.00 1382 reject_low 274 ALIGNMENT 101 Y12-4d01.p1k chr02 577 828 1769 2020 F 252 82.14 1382 reject_low 165 ALIGNMENT 0 Y12-4d01.p1k chr16 62 689 1483 1482 F 628 0.00 1382 reject_low 61 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1076510 1076509 C 520 0.00 1382 reject_low 189 ALIGNMENT 102 Y12-4d01.p1k chr14 582 826 1754 1998 F 245 82.86 1382 reject_low 175 ALIGNMENT 0 Y12-4d01.p1k chr13 62 725 1667 1666 F 664 0.00 1382 reject_low 130 ALIGNMENT 0 Y12-4d01.p1k chr16 661 888 1885 1884 F 228 0.00 1382 reject_low 289 ALIGNMENT 0 Y12-4d01.p1k chr02 62 584 1705 1704 F 523 0.00 1382 reject_low 159 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 1777 1776 F 520 0.00 1382 reject_low 50 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1069991 1069990 C 520 0.00 1382 reject_low 41 ALIGNMENT 938 Y12-4d01.q1k chr09 1140 36 5005 6145 C 1105 95.20 1412 ambiguous_tel 2 ALIGNMENT 55 Y12-4d01.p1k chr09 582 692 2118 2228 F 111 85.59 1382 reject_low 263 ALIGNMENT 139 Y12-4d01.p1k chr08 972 618 560490 560841 C 355 81.13 1382 reject_low 86 ALIGNMENT 629 Y12-4d01.q1k chr06 797 36 3050 3844 C 762 94.75 1412 reject_low 18 ALIGNMENT 163 Y12-4d01.p1k chr07 972 618 1089043 1089394 C 355 83.38 1382 reject_low 65 ALIGNMENT 187 Y12-4d01.p1k chr10 582 933 1813 2164 F 352 85.80 1382 reject_low 80 ALIGNMENT 0 Y12-4d01.p1k chr12 62 580 7685 7684 F 519 0.00 1382 reject_low 299 ALIGNMENT 90 Y12-4d01.p1k chr12 593 790 2018 2215 F 198 83.84 1382 reject_low 322 ALIGNMENT 635 Y12-4d01.q1k chr08 799 36 3743 4538 C 764 94.90 1412 reject_low 16 ALIGNMENT 0 Y12-4d01.p1k chr10 828 888 2166 2165 F 61 0.00 1382 reject_low 134 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1076402 1076401 C 520 0.00 1382 reject_low 317,321 ALIGNMENT 0 Y12-4d01.p1k chr10 62 592 2148 2147 F 531 0.00 1382 reject_low 315 ALIGNMENT 63 Y12-4d01.p1k chr12 899 762 1076552 1076689 C 138 83.33 1382 reject_low 238 ALIGNMENT 0 Y12-4d01.p1k chr04 761 62 1530489 1530488 C 700 0.00 1382 reject_low 234 ALIGNMENT 0 Y12-4d01.p1k chr08 62 761 1651 1650 F 700 0.00 1382 reject_low 124 ALIGNMENT 102 Y12-4d01.p1k chr07 826 582 1088970 1089214 C 245 82.86 1382 reject_low 171 ALIGNMENT 0 Y12-4d01.p1k chr16 838 888 1882 1881 F 51 0.00 1382 reject_low 185 ALIGNMENT 172 Y12-4d01.p1k chr12 582 986 1791 2193 F 405 82.47 1382 reject_low 39 ALIGNMENT 0 Y12-4d01.p1k chr16 62 581 1555 1554 F 520 0.00 1382 reject_low 94 ALIGNMENT 0 Y12-4d01.p1k chr09 62 580 2189 2188 F 519 0.00 1382 reject_low 309 ALIGNMENT 0 Y12-4d01.p1k chr12 791 888 7750 7749 F 98 0.00 1382 reject_low 208 ALIGNMENT 0 Y12-4d01.p1k chr04 888 827 1530065 1530064 C 62 0.00 1382 reject_low 187 ALIGNMENT 0 Y12-4d01.p1k chr08 868 888 1900 1899 F 21 0.00 1382 reject_low 200 ALIGNMENT 0 Y12-4d01.p1k chr08 62 581 1759 1758 F 520 0.00 1382 reject_low 272 ALIGNMENT 63 Y12-4d01.p1k chr08 899 762 560704 560841 C 138 83.33 1382 reject_low 237 ALIGNMENT 0 Y12-4d01.q1k chr16 800 895 944166 944165 F 96 0.00 1412 reject_low 13 ALIGNMENT 0 Y12-4d01.p1k chr05 62 761 1470 1469 F 700 0.00 1382 reject_low 218 ALIGNMENT 43 Y12-4d01.p1k chr08 593 696 1806 1909 F 104 82.69 1382 reject_low 291 ALIGNMENT 735 Y12-4d01.p1k chr13 20 986 1102 2069 F 967 92.66 1382 reject_low 14 ALIGNMENT 0 Y12-4d01.p1k chr07 888 697 1088993 1088992 C 192 0.00 1382 reject_low 265 ALIGNMENT 51 Y12-4d01.p1k chr09 798 930 1686 1818 F 133 79.70 1382 reject_low 248 ALIGNMENT 0 Y12-4d01.p1k chr12 827 888 7750 7749 F 62 0.00 1382 reject_low 173 ALIGNMENT 0 Y12-4d01.p1k chr02 62 617 1486 1485 F 556 0.00 1382 reject_low 88 ALIGNMENT 43 Y12-4d01.p1k chr12 593 660 7661 7728 F 68 89.71 1382 reject_low 284 ALIGNMENT 0 Y12-4d01.p1k chr08 62 592 1806 1805 F 531 0.00 1382 reject_low 291 ALIGNMENT 91 Y12-4d01.p1k chr04 972 726 1530245 1530488 C 247 80.16 1382 reject_low 126 ALIGNMENT 196 Y12-4d01.p1k chr08 903 582 560448 560769 C 322 88.82 1382 reject_low 82 ALIGNMENT 101 Y12-4d01.p1k chr16 837 585 945987 946239 C 253 82.21 1382 reject_low 186 ALIGNMENT 43 Y12-4d01.p1k chr05 660 593 574915 574982 C 68 89.71 1382 reject_low 282 ALIGNMENT 257 Y12-4d01.p1k chr09 618 993 1686 2058 F 376 90.96 1382 reject_low 22 ALIGNMENT 0 Y12-4d01.p1k chr14 791 888 1998 1997 F 98 0.00 1382 reject_low 210 ALIGNMENT 147 Y12-4d01.p1k chr09 582 836 1974 2228 F 255 88.24 1382 reject_low 119 ALIGNMENT 61 Y12-4d01.p1k chr12 754 581 1076265 1076438 C 174 80.46 1382 reject_low 325 ALIGNMENT 99 Y12-4d01.p1k chr12 826 582 1076265 1076509 C 245 82.45 1382 reject_low 189 ALIGNMENT 114 Y12-4d01.p1k chr08 826 582 560417 560661 C 245 84.49 1382 reject_low 160 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1069847 1069846 C 520 0.00 1382 reject_low 188 ALIGNMENT 0 Y12-4d01.p1k chr07 653 62 1089395 1089394 C 592 0.00 1382 reject_low 97 ALIGNMENT 0 Y12-4d01.p1k chr10 62 797 1669 1668 F 736 0.00 1382 reject_low 249 ALIGNMENT 123 Y12-4d01.p1k chr12 585 898 1902 2215 F 314 81.53 1382 reject_low 142 ALIGNMENT 0 Y12-4d01.p1k chr06 62 797 893 892 F 736 0.00 1382 reject_low 156 ALIGNMENT 101 Y12-4d01.p1k chr05 837 585 574918 575170 C 253 82.21 1382 reject_low 179 ALIGNMENT 0 Y12-4d01.p1k chr05 888 791 574894 574893 C 98 0.00 1382 reject_low 206 ALIGNMENT 0 Y12-4d01.p1k chr16 62 653 1483 1482 F 592 0.00 1382 reject_low 102 ALIGNMENT 0 Y12-4d01.p1k chr12 580 62 1069668 1069667 C 519 0.00 1382 reject_low 300 ALIGNMENT 0 Y12-4d01.p1k chr05 725 62 575318 575317 C 664 0.00 1382 reject_low 127 ALIGNMENT 63 Y12-4d01.p1k chr16 762 899 1483 1620 F 138 83.33 1382 reject_low 242 ALIGNMENT 0 Y12-4d01.p1k chr13 62 580 1918 1917 F 519 0.00 1382 reject_low 230 ALIGNMENT 0 Y12-4d01.p1k chr09 62 653 1686 1685 F 592 0.00 1382 reject_low 52 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946099 946098 C 520 0.00 1382 reject_low 270 ALIGNMENT 0 Y12-4d01.p1k chr05 581 62 575282 575281 C 520 0.00 1382 reject_low 33 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 1827 1826 F 520 0.00 1382 reject_low 48 ALIGNMENT 52 Y12-4d01.p1k chr04 696 582 1530086 1530200 C 115 84.35 1382 reject_low 273 ALIGNMENT 738 Y12-4d01.p1k chr16 20 986 918 1885 F 967 92.76 1382 reject_low 4 ALIGNMENT 0 Y12-4d01.p1k chr12 584 62 1076579 1076578 C 523 0.00 1382 reject_low 154 ALIGNMENT 738 Y12-4d01.p1k chr07 986 32 1088992 1089944 C 955 92.88 1382 reject_low 9 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 2079 2078 F 520 0.00 1382 reject_low 316,320 ALIGNMENT 0 Y12-4d01.p1k chr13 62 797 1667 1666 F 736 0.00 1382 reject_low 259 ALIGNMENT 54 Y12-4d01.p1k chr08 899 798 560740 560841 C 102 85.29 1382 reject_low 257 ALIGNMENT 0 Y12-4d01.p1k chr04 584 62 1530342 1530341 C 523 0.00 1382 reject_low 192 ALIGNMENT 241 Y12-4d01.p1k chr05 582 972 1506 1893 F 391 88.75 1382 reject_low 27 ALIGNMENT 769 Y12-4d01.p1k chr16 987 32 946091 947044 C 956 93.93 1382 reject_low 13 ALIGNMENT 33 Y12-4d01.p1k chr16 581 646 1842 1907 F 66 84.85 1382 reject_low 305 ALIGNMENT 0 Y12-4d01.p1k chr06 62 653 893 892 F 592 0.00 1382 reject_low 327 ALIGNMENT 0 Y12-4d01.p1k chr09 62 828 1681 1680 F 767 0.00 1382 reject_low 313 ALIGNMENT 0 Y12-4d01.p1k chr13 827 888 2091 2090 F 62 0.00 1382 reject_low 174 ALIGNMENT 34 Y12-4d01.p1k chr06 581 770 1072 1261 F 190 74.74 1382 reject_low 310 ALIGNMENT 101 Y12-4d01.p1k chr12 585 837 1938 2190 F 253 82.21 1382 reject_low 181 ALIGNMENT 0 Y12-4d01.p1k chr15 888 827 1089230 1089229 C 62 0.00 1382 reject_low 190 ALIGNMENT 0 Y12-4d01.p1k chr09 657 888 2228 2227 F 232 0.00 1382 reject_low 294 ALIGNMENT 64 Y12-4d01.p1k chr05 754 581 574893 575066 C 174 81.03 1382 reject_low 227 ALIGNMENT 196 Y12-4d01.p1k chr05 582 903 1614 1935 F 322 88.82 1382 reject_low 81 ALIGNMENT 0 Y12-4d01.p1k chr15 725 62 1089654 1089653 C 664 0.00 1382 reject_low 132 ALIGNMENT 0 Y12-4d01.p1k chr08 697 888 1909 1908 F 192 0.00 1382 reject_low 291 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1758 1757 F 520 0.00 1382 reject_low 191 ALIGNMENT 0 Y12-4d01.p1k chr16 62 584 1630 1629 F 523 0.00 1382 reject_low 185 ALIGNMENT 146 Y12-4d01.p1k chr12 654 899 1683 1928 F 246 88.21 1382 reject_low 120 ALIGNMENT 33 Y12-4d01.p1k chr05 646 581 574893 574958 C 66 84.85 1382 reject_low 296 ALIGNMENT 54 Y12-4d01.p1k chr05 899 798 575216 575317 C 102 85.29 1382 reject_low 255 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 7506 7505 F 520 0.00 1382 reject_low 173 ALIGNMENT 43 Y12-4d01.p1k chr16 660 593 945984 946051 C 68 89.71 1382 reject_low 290 ALIGNMENT 172 Y12-4d01.p1k chr14 582 903 1646 1967 F 322 86.34 1382 reject_low 93 ALIGNMENT 0 Y12-4d01.p1k chr04 581 62 1530453 1530452 C 520 0.00 1382 reject_low 40 ALIGNMENT 117 Y12-4d01.p1k chr12 898 585 1076265 1076578 C 314 80.89 1382 reject_low 154 ALIGNMENT 0 Y12-4d01.p1k chr06 62 580 1072 1071 F 519 0.00 1382 reject_low 310 ALIGNMENT 0 Y12-4d01.p1k chr12 580 62 1076331 1076330 C 519 0.00 1382 reject_low 301 ALIGNMENT 0 Y12-4d01.p1k chr14 62 592 1909 1908 F 531 0.00 1382 reject_low 287 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1650 1649 F 520 0.00 1382 reject_low 141 ALIGNMENT 0 Y12-4d01.p1k chr12 62 580 2150 2149 F 519 0.00 1382 reject_low 298 ALIGNMENT 0 Y12-4d01.p1k chr16 888 647 945963 945962 C 242 0.00 1382 reject_low 306 ALIGNMENT 0 Y12-4d01.p1k chr12 755 888 7750 7749 F 134 0.00 1382 reject_low 229 ALIGNMENT 226 Y12-4d01.p1k chr12 930 582 1076305 1076653 C 349 89.68 1382 reject_low 42 ALIGNMENT 91 Y12-4d01.p1k chr12 972 726 1069783 1070026 C 247 80.16 1382 reject_low 321 ALIGNMENT 101 Y12-4d01.p1k chr05 726 933 1470 1677 F 208 83.65 1382 reject_low 158 ALIGNMENT 101 Y12-4d01.p1k chr12 585 837 7473 7725 F 253 82.21 1382 reject_low 182 ALIGNMENT 162 Y12-4d01.p1k chr07 930 654 1089118 1089394 C 277 87.36 1382 reject_low 97 ALIGNMENT 0 Y12-4d01.p1k chr12 838 888 7725 7724 F 51 0.00 1382 reject_low 182 ALIGNMENT 0 Y12-4d01.p1k chr02 689 888 2024 2023 F 200 0.00 1382 reject_low 280 ALIGNMENT 0 Y12-4d01.p1k chr15 797 62 1089654 1089653 C 736 0.00 1382 reject_low 261 ALIGNMENT 0 Y12-4d01.p1k chr02 62 580 1845 1844 F 519 0.00 1382 reject_low 221 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 2082 2081 F 520 0.00 1382 reject_low 226 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1614 1613 F 520 0.00 1382 reject_low 81 ALIGNMENT 39 Y12-4d01.p1k chr09 593 656 2165 2228 F 64 89.06 1382 reject_low 294 ALIGNMENT 102 Y12-4d01.p1k chr16 582 826 1663 1907 F 245 82.86 1382 reject_low 176 ALIGNMENT 0 Y12-4d01.p1k chr02 62 580 1881 1880 F 519 0.00 1382 reject_low 252 ALIGNMENT 0 Y12-4d01.p1k chr16 580 62 946136 946135 C 519 0.00 1382 reject_low 233 ALIGNMENT 732 Y12-4d01.p1k chr12 20 986 6761 7728 F 967 92.55 1382 reject_low 15 ALIGNMENT 64 Y12-4d01.p1k chr07 754 581 1088970 1089143 C 174 81.03 1382 reject_low 228 ALIGNMENT 65 Y12-4d01.p1k chr06 846 930 905 989 F 85 91.76 1382 reject_low 213 ALIGNMENT 0 Y12-4d01.p1k chr08 761 888 1937 1936 F 128 0.00 1382 reject_low 272 ALIGNMENT 0 Y12-4d01.p1k chr05 735 888 2054 2053 F 154 0.00 1382 reject_low 312 ALIGNMENT 135 Y12-4d01.p1k chr13 690 987 1667 1962 F 298 82.89 1382 reject_low 58 ALIGNMENT 175 Y12-4d01.p1k chr16 986 582 945984 946386 C 405 82.47 1382 reject_low 32 ALIGNMENT 204 Y12-4d01.p1k chr10 654 933 1669 1948 F 280 92.14 1382 reject_low 53 ALIGNMENT 193 Y12-4d01.p1k chr02 582 930 1558 1906 F 349 86.53 1382 reject_low 71 ALIGNMENT 0 Y12-4d01.p1k chr04 617 62 1530489 1530488 C 556 0.00 1382 reject_low 72 ALIGNMENT 0 Y12-4d01.p1k chr16 827 888 1907 1906 F 62 0.00 1382 reject_low 176 ALIGNMENT 0 Y12-4d01.p1k chr13 62 653 1667 1666 F 592 0.00 1382 reject_low 99 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1830 1829 F 520 0.00 1382 reject_low 225 ALIGNMENT 0 Y12-4d01.p1k chr12 888 838 1069628 1069627 C 51 0.00 1382 reject_low 193 ALIGNMENT 0 Y12-4d01.p1k chr12 827 888 2215 2214 F 62 0.00 1382 reject_low 172 ALIGNMENT 81 Y12-4d01.p1k chr05 762 899 1470 1607 F 138 87.68 1382 reject_low 218 ALIGNMENT 0 Y12-4d01.p1k chr15 888 697 1089252 1089251 C 192 0.00 1382 reject_low 275 ALIGNMENT 169 Y12-4d01.p1k chr15 903 582 1089260 1089581 C 322 86.02 1382 reject_low 107 ALIGNMENT 905 Y12-4d01.q1k chr15 36 1140 1085471 1086611 F 1105 94.21 1412 reject_low 7 ALIGNMENT 0 Y12-4d01.p1k chr02 62 581 1522 1521 F 520 0.00 1382 reject_low 25 ALIGNMENT 0 Y12-4d01.p1k chr09 837 888 2228 2227 F 52 0.00 1382 reject_low 119 ALIGNMENT 149 Y12-4d01.p1k chr16 899 654 946249 946494 C 246 88.62 1382 reject_low 116 ALIGNMENT 63 Y12-4d01.p1k chr07 899 762 1089257 1089394 C 138 83.33 1382 reject_low 236 ALIGNMENT 99 Y12-4d01.p1k chr12 826 582 1069602 1069846 C 245 82.45 1382 reject_low 188 ALIGNMENT 0 Y12-4d01.p1k chr12 62 580 7577 7576 F 519 0.00 1382 reject_low 229 ALIGNMENT 0 Y12-4d01.p1k chr02 62 581 1738 1737 F 520 0.00 1382 reject_low 167 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 1758 1757 F 520 0.00 1382 reject_low 109 ALIGNMENT 0 Y12-4d01.p1k chr13 62 581 1703 1702 F 520 0.00 1382 reject_low 36 ALIGNMENT 153 Y12-4d01.p1k chr10 690 1021 1669 2000 F 332 84.04 1382 reject_low 20 ALIGNMENT 0 Y12-4d01.p1k chr05 592 62 575091 575090 C 531 0.00 1382 reject_low 206 ALIGNMENT 21 Y12-4d01.p1k chr06 848 899 1135 1186 F 52 80.77 1382|10,0 reject_low 326,327 ALIGNMENT 78 Y12-4d01.p1k chr10 582 745 2029 2192 F 164 84.76 1382 reject_low 219 ALIGNMENT 82 Y12-4d01.p1k chr10 762 930 1669 1837 F 169 83.43 1382 reject_low 199 ALIGNMENT 0 Y12-4d01.p1k chr14 62 580 1933 1932 F 519 0.00 1382 reject_low 303 ALIGNMENT 0 Y12-4d01.p1k chr14 647 888 1998 1997 F 242 0.00 1382 reject_low 303 ALIGNMENT 0 Y12-4d01.p1k chr12 592 62 1069692 1069691 C 531 0.00 1382 reject_low 285 ALIGNMENT 101 Y12-4d01.p1k chr07 837 585 1088995 1089247 C 253 82.21 1382 reject_low 180 ALIGNMENT 0 Y12-4d01.p1k chr12 658 657 2191 7329 F 0 0.00 1382 reject_low 318 ALIGNMENT 64 Y12-4d01.p1k chr16 581 754 1734 1907 F 174 81.03 1382 reject_low 232 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 2101 2100 F 520 0.00 1382 reject_low 279 ALIGNMENT 0 Y12-4d01.p1k chr15 581 62 1089618 1089617 C 520 0.00 1382 reject_low 43 ALIGNMENT 63 Y12-4d01.p1k chr13 762 899 1667 1804 F 138 83.33 1382 reject_low 239 ALIGNMENT 0 Y12-4d01.q1k chr12 895 800 4012 4011 C 96 0.00 1412 reject_low 11 ALIGNMENT 0 Y12-4d01.p1k chr07 888 827 1088971 1088970 C 62 0.00 1382 reject_low 171 ALIGNMENT 109 Y12-4d01.p1k chr02 582 837 1738 1993 F 256 83.20 1382 reject_low 167 ALIGNMENT 735 Y12-4d01.p1k chr12 986 32 1076287 1077239 C 955 92.77 1382 reject_low 6 ALIGNMENT 0 Y12-4d01.q1k chr12 895 800 9547 9546 C 96 0.00 1412 reject_low 15 ALIGNMENT 0 Y12-4d01.p1k chr16 62 592 1818 1817 F 531 0.00 1382 reject_low 289 ALIGNMENT 0 Y12-4d01.p1k chr08 62 797 1651 1650 F 736 0.00 1382 reject_low 201 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 1722 1721 F 520 0.00 1382 reject_low 76 ALIGNMENT 893 Y12-4d01.q1k chr16 1140 36 4525 5665 C 1105 93.85 1412 reject_low 4 ALIGNMENT 0 Y12-4d01.p1k chr02 62 689 1486 1485 F 628 0.00 1382 reject_low 138 ALIGNMENT 0 Y12-4d01.p1k chr16 725 62 946495 946494 C 664 0.00 1382 reject_low 118 ALIGNMENT 0 Y12-4d01.p1k chr06 828 888 1246 1245 F 61 0.00 1382 reject_low 243 ALIGNMENT 0 Y12-4d01.p1k chr02 62 581 1558 1557 F 520 0.00 1382 reject_low 71 ALIGNMENT 54 Y12-4d01.p1k chr16 798 899 1483 1584 F 102 85.29 1382 reject_low 262 ALIGNMENT 0 Y12-4d01.p1k chr14 62 592 1801 1800 F 531 0.00 1382 reject_low 210 ALIGNMENT 166 Y12-4d01.p1k chr09 582 903 1758 2079 F 322 85.71 1382 reject_low 109 ALIGNMENT 0 Y12-4d01.p1k chr10 62 576 1880 1879 F 515 0.00 1382 reject_low 70 ALIGNMENT 0 Y12-4d01.p1k chr15 888 755 1089230 1089229 C 134 0.00 1382 reject_low 247 ALIGNMENT 79 Y12-4d01.p1k chr16 987 762 946271 946494 C 226 79.20 1382 reject_low 121 ALIGNMENT 0 Y12-4d01.p1k chr09 62 592 1949 1948 F 531 0.00 1382 reject_low 122 ALIGNMENT 0 Y12-4d01.p1k chr12 725 62 1076690 1076689 C 664 0.00 1382 reject_low 129 ALIGNMENT 0 Y12-4d01.p1k chr04 689 62 1530489 1530488 C 628 0.00 1382 reject_low 54 ALIGNMENT 0 Y12-4d01.p1k chr05 62 689 1470 1469 F 628 0.00 1382 reject_low 157 ALIGNMENT 0 Y12-4d01.p1k chr06 62 845 905 904 F 784 0.00 1382 reject_low 213 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1542 1541 F 520 0.00 1382 reject_low 26 ALIGNMENT 172 Y12-4d01.p1k chr05 903 582 574924 575245 C 322 86.34 1382 reject_low 89 ALIGNMENT 33 Y12-4d01.p1k chr04 646 581 1530064 1530129 C 66 84.85 1382 reject_low 295 ALIGNMENT 109 Y12-4d01.p1k chr02 726 930 1486 1690 F 205 85.37 1382 reject_low 143 ALIGNMENT 166 Y12-4d01.p1k chr10 582 903 1741 2062 F 322 85.71 1382 reject_low 110 ALIGNMENT 0 Y12-4d01.p1k chr05 580 62 574959 574958 C 519 0.00 1382 reject_low 296 ALIGNMENT 0 Y12-4d01.p1k chr04 888 647 1530065 1530064 C 242 0.00 1382 reject_low 295 ALIGNMENT 0 Y12-4d01.p1k chr08 617 62 560842 560841 C 556 0.00 1382 reject_low 86 ALIGNMENT 82 Y12-4d01.p1k chr09 762 930 1686 1854 F 169 83.43 1382 reject_low 198 ALIGNMENT 29 Y12-4d01.p1k chr09 581 620 2189 2228 F 40 92.50 1382 reject_low 309 ALIGNMENT 0 Y12-4d01.p1k chr08 62 592 1842 1841 F 531 0.00 1382 reject_low 293 ALIGNMENT 772 Y12-4d01.p1k chr05 32 930 920 1818 F 899 95.66 1382 ambiguous_tel 1 ALIGNMENT 0 Y12-4d01.p1k chr02 62 576 1769 1768 F 515 0.00 1382 reject_low 165 ALIGNMENT 0 Y12-4d01.p1k chr16 62 797 1483 1482 F 736 0.00 1382 reject_low 262 ALIGNMENT 0 Y12-4d01.p1k chr07 580 62 1089144 1089143 C 519 0.00 1382 reject_low 228 ALIGNMENT 55 Y12-4d01.p1k chr10 582 709 2065 2192 F 128 83.59 1382 reject_low 271 ALIGNMENT 63 Y12-4d01.p1k chr12 762 899 7326 7463 F 138 83.33 1382 reject_low 324 ALIGNMENT 0 Y12-4d01.p1k chr02 62 797 1486 1485 F 736 0.00 1382 reject_low 253 ALIGNMENT 0 Y12-4d01.p1k chr05 888 755 574894 574893 C 134 0.00 1382 reject_low 227 ALIGNMENT 120 Y12-4d01.p1k chr16 585 898 1594 1907 F 314 81.21 1382 reject_low 149 ALIGNMENT 0 Y12-4d01.p1k chr14 62 653 1574 1573 F 592 0.00 1382 reject_low 100 ALIGNMENT 0 Y12-4d01.p1k chr10 638 888 2192 2191 F 251 0.00 1382 reject_low 315 ALIGNMENT 54 Y12-4d01.p1k chr15 899 798 1089552 1089653 C 102 85.29 1382 reject_low 261 ALIGNMENT 0 Y12-4d01.p1k chr05 888 697 574916 574915 C 192 0.00 1382 reject_low 264 ALIGNMENT 0 Y12-4d01.p1k chr08 592 62 560471 560470 C 531 0.00 1382 reject_low 311 ALIGNMENT 0 Y12-4d01.p1k chr10 62 725 1669 1668 F 664 0.00 1382 reject_low 162 ALIGNMENT 0 Y12-4d01.p1k chr15 689 62 1089654 1089653 C 628 0.00 1382 reject_low 60 ALIGNMENT 33 Y12-4d01.p1k chr12 581 646 7685 7750 F 66 84.85 1382 reject_low 299 ALIGNMENT 0 Y12-4d01.p1k chr15 888 661 1089252 1089251 C 228 0.00 1382 reject_low 288 ALIGNMENT 0 Y12-4d01.p1k chr02 62 725 1486 1485 F 664 0.00 1382 reject_low 143 ALIGNMENT 90 Y12-4d01.p1k chr05 790 593 574893 575090 C 198 83.84 1382 reject_low 206 ALIGNMENT 0 Y12-4d01.p1k chr06 838 847 1113 1134 F 10 0.00 1382 reject_low 326 ALIGNMENT 27 Y12-4d01.p1k chr10 593 637 2148 2192 F 45 88.89 1382 reject_low 315 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 7362 7361 F 520 0.00 1382 reject_low 35 ALIGNMENT 33 Y12-4d01.p1k chr15 646 581 1089229 1089294 C 66 84.85 1382 reject_low 304 ALIGNMENT 0 Y12-4d01.p1k chr10 62 592 2004 2003 F 531 0.00 1382 reject_low 205 ALIGNMENT 90 Y12-4d01.p1k chr14 593 790 1801 1998 F 198 83.84 1382 reject_low 210 ALIGNMENT 0 Y12-4d01.p1k chr16 62 580 1842 1841 F 519 0.00 1382 reject_low 305 ALIGNMENT 32 Y12-4d01.p1k chr08 581 636 1866 1921 F 56 87.50 1382 reject_low 308 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 1974 1973 F 520 0.00 1382 reject_low 119 ALIGNMENT 0 Y12-4d01.p1k chr09 868 888 2223 2222 F 21 0.00 1382 reject_low 122 ALIGNMENT 0 Y12-4d01.p1k chr04 653 62 1530489 1530488 C 592 0.00 1382 reject_low 95 ALIGNMENT 133 Y12-4d01.p1k chr12 726 930 1683 1887 F 205 89.27 1382 reject_low 117 ALIGNMENT 196 Y12-4d01.p1k chr12 582 972 1755 2142 F 391 85.17 1382 reject_low 31 ALIGNMENT 56 Y12-4d01.p1k chr08 582 760 1759 1937 F 179 79.33 1382 reject_low 272 ALIGNMENT 117 Y12-4d01.p1k chr15 898 585 1089229 1089542 C 314 80.89 1382 reject_low 155 ALIGNMENT 0 Y12-4d01.p1k chr02 761 888 2024 2023 F 128 0.00 1382 reject_low 221 ALIGNMENT 0 Y12-4d01.p1k chr14 62 581 1754 1753 F 520 0.00 1382 reject_low 175 ALIGNMENT 0 Y12-4d01.p1k chr06 62 617 893 892 F 556 0.00 1382 reject_low 326 ALIGNMENT 0 Y12-4d01.p1k chr15 581 62 1089474 1089473 C 520 0.00 1382 reject_low 190 ALIGNMENT 0 Y12-4d01.p1k chr13 62 761 1667 1666 F 700 0.00 1382 reject_low 239 ALIGNMENT 104 Y12-4d01.p1k chr09 593 800 2021 2228 F 208 85.58 1382 reject_low 169 ALIGNMENT 0 Y12-4d01.p1k chr15 581 62 1089582 1089581 C 520 0.00 1382 reject_low 107 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 1741 1740 F 520 0.00 1382 reject_low 110 ALIGNMENT 153 Y12-4d01.p1k chr09 690 1021 1686 2017 F 332 84.04 1382 reject_low 19 ALIGNMENT 0 Y12-4d01.p1k chr16 584 62 946240 946239 C 523 0.00 1382 reject_low 186 ALIGNMENT 55 Y12-4d01.p1k chr12 582 696 7614 7728 F 115 85.22 1382 reject_low 266 ALIGNMENT 0 Y12-4d01.p1k chr07 584 62 1089248 1089247 C 523 0.00 1382 reject_low 180 ALIGNMENT 0 Y12-4d01.p1k chr14 62 584 1685 1684 F 523 0.00 1382 reject_low 148 ALIGNMENT 56 Y12-4d01.p1k chr08 798 972 1651 1822 F 175 78.29 1382 reject_low 201 ALIGNMENT 43 Y12-4d01.p1k chr12 660 593 1069624 1069691 C 68 89.71 1382 reject_low 285 ALIGNMENT 64 Y12-4d01.p1k chr13 581 754 1918 2091 F 174 81.03 1382 reject_low 230 ALIGNMENT 113 Y12-4d01.p1k chr08 837 585 560442 560694 C 253 83.79 1382 reject_low 164 ALIGNMENT 0 Y12-4d01.p1k chr06 62 581 1001 1000 F 520 0.00 1382 reject_low 243 ALIGNMENT 0 Y12-4d01.p1k chr08 828 888 1932 1931 F 61 0.00 1382 reject_low 197 ALIGNMENT 166 Y12-4d01.p1k chr05 618 1021 1470 1873 F 404 82.18 1382 reject_low 21 ALIGNMENT 0 Y12-4d01.p1k chr05 689 62 575318 575317 C 628 0.00 1382 reject_low 55 ALIGNMENT 0 Y12-4d01.p1k chr12 62 689 1683 1682 F 628 0.00 1382 reject_low 112 ALIGNMENT 1027 Y12-4d01.q1k chr12 36 1140 1065955 1067063 F 1105 97.74 1412 ambiguous_tel 0 ALIGNMENT 226 Y12-4d01.p1k chr15 930 582 1089269 1089617 C 349 89.68 1382 reject_low 43 ALIGNMENT 0 Y12-4d01.p1k chr09 729 888 2228 2227 F 160 0.00 1382 reject_low 226 ALIGNMENT 54 Y12-4d01.p1k chr02 798 899 1486 1587 F 102 85.29 1382 reject_low 253 ALIGNMENT 187 Y12-4d01.p1k chr09 582 933 1830 2181 F 352 85.80 1382 reject_low 79 ALIGNMENT 54 Y12-4d01.p1k chr12 899 798 1069925 1070026 C 102 85.29 1382 reject_low 323 ALIGNMENT 166 Y12-4d01.p1k chr08 726 986 1651 1909 F 261 88.89 1382 reject_low 28 ALIGNMENT 0 Y12-4d01.p1k chr16 888 755 945963 945962 C 134 0.00 1382 reject_low 233 ALIGNMENT 124 Y12-4d01.p1k chr05 582 867 1650 1935 F 286 83.22 1382 reject_low 141 ALIGNMENT 162 Y12-4d01.p1k chr12 654 930 7326 7602 F 277 87.36 1382|4,0 reject_low 318 ALIGNMENT 0 Y12-4d01.p1k chr07 761 62 1089395 1089394 C 700 0.00 1382 reject_low 236 ALIGNMENT 0 Y12-4d01.p1k chr02 62 581 1918 1917 F 520 0.00 1382 reject_low 280 ALIGNMENT 0 Y12-4d01.p1k chr10 62 617 1669 1668 F 556 0.00 1382 reject_low 23 ALIGNMENT 100 Y12-4d01.p1k chr06 593 903 940 1250 F 311 79.10 1382 reject_low 178 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1578 1577 F 520 0.00 1382 reject_low 46 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946423 946422 C 520 0.00 1382 reject_low 30 ALIGNMENT 211 Y12-4d01.p1k chr12 582 930 1827 2175 F 349 88.25 1382 reject_low 48 ALIGNMENT 0 Y12-4d01.p1k chr12 617 62 1070027 1070026 C 556 0.00 1382 reject_low 73 ALIGNMENT 0 Y12-4d01.p1k chr16 62 761 1483 1482 F 700 0.00 1382 reject_low 242 ALIGNMENT 0 Y12-4d01.p1k chr10 746 888 2192 2191 F 143 0.00 1382 reject_low 219 ALIGNMENT 0 Y12-4d01.p1k chr07 592 62 1089168 1089167 C 531 0.00 1382 reject_low 207 ALIGNMENT 120 Y12-4d01.p1k chr13 585 898 1778 2091 F 314 81.21 1382 reject_low 147 ALIGNMENT 47 Y12-4d01.p1k chr05 593 770 1877 2054 F 178 77.53 1382 reject_low 277 ALIGNMENT 0 Y12-4d01.p1k chr16 617 62 946495 946494 C 556 0.00 1382 reject_low 78 ALIGNMENT 150 Y12-4d01.p1k chr12 690 933 1683 1926 F 244 88.11 1382 reject_low 112 ALIGNMENT 0 Y12-4d01.p1k chr14 62 761 1574 1573 F 700 0.00 1382 reject_low 240 ALIGNMENT 0 Y12-4d01.p1k chr08 888 791 560418 560417 C 98 0.00 1382 reject_low 203 ALIGNMENT 160 Y12-4d01.p1k chr12 972 618 1069675 1070026 C 355 83.10 1382 reject_low 73 ALIGNMENT 0 Y12-4d01.p1k chr12 592 62 1076463 1076462 C 531 0.00 1382 reject_low 323 ALIGNMENT 0 Y12-4d01.p1k chr14 62 580 1825 1824 F 519 0.00 1382 reject_low 231 ALIGNMENT 0 Y12-4d01.p1k chr04 592 62 1530262 1530261 C 531 0.00 1382 reject_low 215 ALIGNMENT 43 Y12-4d01.p1k chr16 593 660 1818 1885 F 68 89.71 1382 reject_low 289 ALIGNMENT 102 Y12-4d01.p1k chr05 826 582 574893 575137 C 245 82.86 1382 reject_low 170 ALIGNMENT 0 Y12-4d01.q1k chr02 895 800 4213 4212 C 96 0.00 1412 reject_low 12 ALIGNMENT 91 Y12-4d01.p1k chr13 726 972 1667 1910 F 247 80.16 1382 reject_low 130 ALIGNMENT 0 Y12-4d01.p1k chr04 581 62 1530309 1530308 C 520 0.00 1382 reject_low 187 ALIGNMENT 905 Y12-4d01.q1k chr04 36 1140 1526306 1527446 F 1105 94.21 1412 reject_low 5 ALIGNMENT 0 Y12-4d01.p1k chr12 653 62 1076690 1076689 C 592 0.00 1382 reject_low 98 ALIGNMENT 0 Y12-4d01.q1k chr13 895 800 3888 3887 C 96 0.00 1412 reject_low 14 ALIGNMENT 0 Y12-4d01.p1k chr13 62 592 2002 2001 F 531 0.00 1382 reject_low 286 ALIGNMENT 0 Y12-4d01.p1k chr09 693 888 2228 2227 F 196 0.00 1382 reject_low 263 ALIGNMENT 0 Y12-4d01.q1k chr06 895 798 3051 3050 C 98 0.00 1412 reject_low 18 ALIGNMENT 88 Y12-4d01.p1k chr02 593 796 1821 2024 F 204 83.33 1382 reject_low 214 ALIGNMENT 893 Y12-4d01.q1k chr07 36 1140 1085212 1086352 F 1105 93.85 1412 reject_low 9 ALIGNMENT 0 Y12-4d01.p1k chr14 661 888 1976 1975 F 228 0.00 1382 reject_low 287 ALIGNMENT 102 Y12-4d01.p1k chr12 582 826 1971 2215 F 245 82.86 1382 reject_low 172 ALIGNMENT 0 Y12-4d01.p1k chr08 62 689 1651 1650 F 628 0.00 1382 reject_low 111 ALIGNMENT 166 Y12-4d01.p1k chr02 582 930 1630 1978 F 349 83.95 1382 reject_low 87 ALIGNMENT 0 Y12-4d01.p1k chr02 797 888 2024 2023 F 92 0.00 1382 reject_low 214 ALIGNMENT 0 Y12-4d01.p1k chr08 581 62 560770 560769 C 520 0.00 1382 reject_low 82 ALIGNMENT 253 Y12-4d01.p1k chr08 930 582 560457 560805 C 349 92.26 1382 reject_low 29 ALIGNMENT 169 Y12-4d01.p1k chr12 903 582 1069633 1069954 C 322 86.02 1382 reject_low 105 ALIGNMENT 128 Y12-4d01.p1k chr05 654 899 1470 1715 F 246 85.77 1382 reject_low 137 ALIGNMENT 0 Y12-4d01.p1k chr09 62 617 1686 1685 F 556 0.00 1382 reject_low 22 ALIGNMENT 33 Y12-4d01.p1k chr14 581 646 1933 1998 F 66 84.85 1382 reject_low 303 ALIGNMENT 120 Y12-4d01.p1k chr05 898 585 574893 575206 C 314 81.21 1382 reject_low 144 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 1849 1848 F 520 0.00 1382 reject_low 63 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 2118 2117 F 520 0.00 1382 reject_low 263 ALIGNMENT 0 Y12-4d01.p1k chr04 888 697 1530087 1530086 C 192 0.00 1382 reject_low 273 ALIGNMENT 0 Y12-4d01.p1k chr16 888 827 945963 945962 C 62 0.00 1382 reject_low 177 ALIGNMENT 0 Y12-4d01.p1k chr09 62 725 1686 1685 F 664 0.00 1382 reject_low 161 ALIGNMENT 0 Y12-4d01.p1k chr06 62 592 1048 1047 F 531 0.00 1382 reject_low 278 ALIGNMENT 190 Y12-4d01.p1k chr10 577 889 1880 2192 F 313 88.82 1382 reject_low 70 ALIGNMENT 0 Y12-4d01.p1k chr05 581 62 575138 575137 C 520 0.00 1382 reject_low 170 ALIGNMENT 90 Y12-4d01.p1k chr16 790 593 945962 946159 C 198 83.84 1382 reject_low 212 ALIGNMENT 43 Y12-4d01.p1k chr04 660 593 1530086 1530153 C 68 89.71 1382 reject_low 281 ALIGNMENT 0 Y12-4d01.p1k chr13 62 617 1667 1666 F 556 0.00 1382 reject_low 67 ALIGNMENT 54 Y12-4d01.p1k chr07 899 798 1089293 1089394 C 102 85.29 1382 reject_low 256 ALIGNMENT 70 Y12-4d01.p1k chr06 593 882 976 1265 F 290 76.55 1382 reject_low 223 ALIGNMENT 0 Y12-4d01.p1k chr12 725 697 1070027 1076286 C 29 0.00 1382 reject_low 321 ALIGNMENT 0 Y12-4d01.p1k chr02 62 592 1677 1676 F 531 0.00 1382 reject_low 115 ALIGNMENT 0 Y12-4d01.p1k chr06 62 725 893 892 F 664 0.00 1382 reject_low 151 ALIGNMENT 33 Y12-4d01.p1k chr12 646 581 1076265 1076330 C 66 84.85 1382 reject_low 301 ALIGNMENT 0 Y12-4d01.q1k chr08 800 895 558619 558618 F 96 0.00 1412 reject_low 17 ALIGNMENT 162 Y12-4d01.p1k chr04 930 654 1530212 1530488 C 277 87.36 1382 reject_low 95 ALIGNMENT 0 Y12-4d01.p1k chr12 661 888 7728 7727 F 228 0.00 1382 reject_low 284 ALIGNMENT 0 Y12-4d01.p1k chr07 592 62 1089060 1089059 C 531 0.00 1382 reject_low 283 ALIGNMENT 0 Y12-4d01.p1k chr05 581 62 575246 575245 C 520 0.00 1382 reject_low 89 ALIGNMENT 52 Y12-4d01.p1k chr15 696 582 1089251 1089365 C 115 84.35 1382 reject_low 275 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 2029 2028 F 520 0.00 1382 reject_low 219 ALIGNMENT 0 Y12-4d01.p1k chr16 755 888 1907 1906 F 134 0.00 1382 reject_low 232 ALIGNMENT 0 Y12-4d01.p1k chr06 62 689 893 892 F 628 0.00 1382 reject_low 202 ALIGNMENT 96 Y12-4d01.p1k chr08 618 867 1651 1900 F 250 81.60 1382 reject_low 200 ALIGNMENT 43 Y12-4d01.p1k chr12 593 660 2126 2193 F 68 89.71 1382|0,3 reject_low 318 ALIGNMENT 43 Y12-4d01.p1k chr14 593 660 1909 1976 F 68 89.71 1382 reject_low 287 ALIGNMENT 0 Y12-4d01.p1k chr02 62 653 1486 1485 F 592 0.00 1382 reject_low 168 ALIGNMENT 51 Y12-4d01.p1k chr16 930 798 946362 946494 C 133 79.70 1382 reject_low 251 ALIGNMENT 162 Y12-4d01.p1k chr12 930 654 1076413 1076689 C 277 87.36 1382 reject_low 98 ALIGNMENT 43 Y12-4d01.p1k chr12 660 593 1076287 1076354 C 68 89.71 1382|3,0 reject_low 319 ALIGNMENT 0 Y12-4d01.p1k chr07 888 838 1088996 1088995 C 51 0.00 1382 reject_low 180 ALIGNMENT 55 Y12-4d01.p1k chr13 582 696 1955 2069 F 115 85.22 1382 reject_low 267 ALIGNMENT 91 Y12-4d01.p1k chr07 972 726 1089151 1089394 C 247 80.16 1382 reject_low 128 ALIGNMENT 163 Y12-4d01.p1k chr05 972 618 574966 575317 C 355 83.38 1382 reject_low 64 ALIGNMENT 160 Y12-4d01.p1k chr12 972 618 1076338 1076689 C 355 83.10 1382 reject_low 74 ALIGNMENT 63 Y12-4d01.p1k chr15 899 762 1089516 1089653 C 138 83.33 1382 reject_low 241 ALIGNMENT 54 Y12-4d01.p1k chr04 899 798 1530387 1530488 C 102 85.29 1382 reject_low 254 ALIGNMENT 0 Y12-4d01.p1k chr10 710 888 2192 2191 F 179 0.00 1382 reject_low 271 ALIGNMENT 0 Y12-4d01.p1k chr14 62 689 1574 1573 F 628 0.00 1382 reject_low 59 ALIGNMENT 0 Y12-4d01.p1k chr15 580 62 1089403 1089402 C 519 0.00 1382 reject_low 247 ALIGNMENT 43 Y12-4d01.p1k chr13 593 660 2002 2069 F 68 89.71 1382 reject_low 286 ALIGNMENT 135 Y12-4d01.p1k chr12 987 690 1076394 1076689 C 298 82.89 1382 reject_low 57 ALIGNMENT 0 Y12-4d01.p1k chr16 697 888 1885 1884 F 192 0.00 1382 reject_low 269 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946207 946206 C 520 0.00 1382 reject_low 177 ALIGNMENT 201 Y12-4d01.p1k chr10 582 899 1705 2022 F 318 89.62 1382 reject_low 77 ALIGNMENT 0 Y12-4d01.p1k chr04 580 62 1530238 1530237 C 519 0.00 1382 reject_low 245 ALIGNMENT 0 Y12-4d01.p1k chr05 62 580 1901 1900 F 519 0.00 1382 reject_low 312 ALIGNMENT 763 Y12-4d01.p1k chr10 32 933 1119 2020 F 902 95.23 1382 ambiguous_tel 3 ALIGNMENT 0 Y12-4d01.p1k chr05 580 62 575067 575066 C 519 0.00 1382 reject_low 227 ALIGNMENT 0 Y12-4d01.p1k chr16 62 580 1734 1733 F 519 0.00 1382 reject_low 232 ALIGNMENT 0 Y12-4d01.p1k chr12 62 617 1683 1682 F 556 0.00 1382 reject_low 83 ALIGNMENT 0 Y12-4d01.p1k chr12 617 62 1076690 1076689 C 556 0.00 1382 reject_low 74 ALIGNMENT 0 Y12-4d01.p1k chr04 888 838 1530090 1530089 C 51 0.00 1382 reject_low 192 ALIGNMENT 55 Y12-4d01.p1k chr14 582 696 1862 1976 F 115 85.22 1382 reject_low 268 ALIGNMENT 55 Y12-4d01.p1k chr07 696 582 1088992 1089106 C 115 85.22 1382 reject_low 265 ALIGNMENT 0 Y12-4d01.p1k chr04 797 62 1530489 1530488 C 736 0.00 1382 reject_low 254 ALIGNMENT 0 Y12-4d01.p1k chr07 581 62 1089359 1089358 C 520 0.00 1382 reject_low 34 ALIGNMENT 0 Y12-4d01.p1k chr12 62 761 1683 1682 F 700 0.00 1382 reject_low 163 ALIGNMENT 64 Y12-4d01.p1k chr06 582 827 1001 1246 F 246 77.64 1382 reject_low 243 ALIGNMENT 68 Y12-4d01.p1k chr05 582 806 1830 2054 F 225 79.11 1382 reject_low 225 ALIGNMENT 70 Y12-4d01.p1k chr02 581 760 1845 2024 F 180 81.67 1382 reject_low 221 ALIGNMENT 0 Y12-4d01.p1k chr12 62 584 1938 1937 F 523 0.00 1382 reject_low 181 ALIGNMENT 0 Y12-4d01.p1k chr16 62 725 1483 1482 F 664 0.00 1382 reject_low 133 ALIGNMENT 0 Y12-4d01.p1k chr08 581 62 560806 560805 C 520 0.00 1382 reject_low 29 ALIGNMENT 0 Y12-4d01.p1k chr16 580 62 946028 946027 C 519 0.00 1382 reject_low 306 ALIGNMENT 135 Y12-4d01.p1k chr12 690 987 7326 7621 F 298 82.89 1382|4,0 reject_low 316 ALIGNMENT 196 Y12-4d01.p1k chr09 577 903 1897 2223 F 327 88.38 1382 reject_low 62 ALIGNMENT 0 Y12-4d01.p1k chr08 888 755 560418 560417 C 134 0.00 1382 reject_low 244 ALIGNMENT 0 Y12-4d01.p1k chr02 725 888 2024 2023 F 164 0.00 1382 reject_low 252 ALIGNMENT 90 Y12-4d01.p1k chr13 593 790 1894 2091 F 198 83.84 1382 reject_low 209 ALIGNMENT 628 Y12-4d01.p1k chr06 32 905 343 1216 F 874 91.08 1382 reject_low 18 ALIGNMENT 0 Y12-4d01.p1k chr15 617 62 1089654 1089653 C 556 0.00 1382 reject_low 75 ALIGNMENT 0 Y12-4d01.p1k chr02 829 888 2020 2019 F 60 0.00 1382 reject_low 165 ALIGNMENT 0 Y12-4d01.p1k chr12 62 653 1683 1682 F 592 0.00 1382 reject_low 120 ALIGNMENT 0 Y12-4d01.p1k chr13 62 592 1894 1893 F 531 0.00 1382 reject_low 209 ALIGNMENT 0 Y12-4d01.p1k chr07 580 62 1089036 1089035 C 519 0.00 1382 reject_low 297 ALIGNMENT 90 Y12-4d01.p1k chr07 790 593 1088970 1089167 C 198 83.84 1382 reject_low 207 ALIGNMENT 0 Y12-4d01.p1k chr13 838 888 2066 2065 F 51 0.00 1382 reject_low 183 ALIGNMENT 0 Y12-4d01.p1k chr12 62 592 7553 7552 F 531 0.00 1382 reject_low 208 ALIGNMENT 61 Y12-4d01.p1k chr12 754 581 1069602 1069775 C 174 80.46 1382 reject_low 246 ALIGNMENT 162 Y12-4d01.p1k chr05 930 654 575041 575317 C 277 87.36 1382 reject_low 96 ALIGNMENT 33 Y12-4d01.p1k chr12 581 646 2150 2215 F 66 84.85 1382 reject_low 298 ALIGNMENT 54 Y12-4d01.p1k chr12 798 899 7326 7427 F 102 85.29 1382 reject_low 322 ALIGNMENT 0 Y12-4d01.p1k chr10 674 888 2192 2191 F 215 0.00 1382 reject_low 279 ALIGNMENT 98 Y12-4d01.p1k chr12 837 585 1069627 1069879 C 253 81.82 1382 reject_low 193 ALIGNMENT 0 Y12-4d01.p1k chr12 797 62 1076690 1076689 C 736 0.00 1382 reject_low 258 ALIGNMENT 101 Y12-4d01.p1k chr16 585 837 1630 1882 F 253 82.21 1382 reject_low 185 ALIGNMENT 0 Y12-4d01.p1k chr10 62 761 1669 1668 F 700 0.00 1382 reject_low 199 ALIGNMENT 91 Y12-4d01.p1k chr15 972 726 1089410 1089653 C 247 80.16 1382 reject_low 132 ALIGNMENT 738 Y12-4d01.p1k chr05 986 32 574915 575867 C 955 92.88 1382 reject_low 10 ALIGNMENT 0 Y12-4d01.p1k chr10 62 689 1669 1668 F 628 0.00 1382 reject_low 20 ALIGNMENT 52 Y12-4d01.p1k chr12 696 582 1069624 1069738 C 115 84.35 1382 reject_low 274 ALIGNMENT 125 Y12-4d01.p1k chr16 898 582 945962 946278 C 317 81.70 1382 reject_low 140 ALIGNMENT 102 Y12-4d01.p1k chr12 582 826 7506 7750 F 245 82.86 1382 reject_low 173 ALIGNMENT 0 Y12-4d01.p1k chr08 725 62 560842 560841 C 664 0.00 1382 reject_low 114 ALIGNMENT 61 Y12-4d01.p1k chr04 754 581 1530064 1530237 C 174 80.46 1382 reject_low 245 ALIGNMENT 0 Y12-4d01.p1k chr16 888 661 945985 945984 C 228 0.00 1382 reject_low 290 ALIGNMENT 0 Y12-4d01.p1k chr05 62 592 1877 1876 F 531 0.00 1382 reject_low 277 ALIGNMENT 0 Y12-4d01.p1k chr14 62 797 1574 1573 F 736 0.00 1382 reject_low 260 ALIGNMENT 0 Y12-4d01.p1k chr02 62 584 1597 1596 F 523 0.00 1382 reject_low 103 ALIGNMENT 732 Y12-4d01.p1k chr14 20 986 1009 1976 F 967 92.55 1382 reject_low 8 ALIGNMENT 635 Y12-4d01.q1k chr12 799 36 9546 10341 C 764 94.90 1412 reject_low 15 ALIGNMENT 0 Y12-4d01.p1k chr05 888 661 574916 574915 C 228 0.00 1382 reject_low 282 ALIGNMENT 87 Y12-4d01.p1k chr12 790 593 1069602 1069799 C 198 83.33 1382 reject_low 216 ALIGNMENT 0 Y12-4d01.p1k chr08 653 62 560842 560841 C 592 0.00 1382 reject_low 113 ALIGNMENT 671 Y12-4d01.p1k chr08 32 837 1101 1906 F 806 94.91 1382 reject_low 16 ALIGNMENT 0 Y12-4d01.p1k chr08 888 827 560418 560417 C 62 0.00 1382 reject_low 160 ALIGNMENT 102 Y12-4d01.p1k chr13 582 826 1847 2091 F 245 82.86 1382 reject_low 174 ALIGNMENT 0 Y12-4d01.p1k chr12 755 761 2216 7325 F 7 0.00 1382 reject_low 324 ALIGNMENT 52 Y12-4d01.p1k chr12 696 582 1076287 1076401 C 115 84.35 1382|3,0 reject_low 317,321 ALIGNMENT 0 Y12-4d01.p1k chr04 584 62 1530378 1530377 C 523 0.00 1382 reject_low 152 ALIGNMENT 0 Y12-4d01.p1k chr05 617 62 575318 575317 C 556 0.00 1382 reject_low 64 ALIGNMENT 0 Y12-4d01.p1k chr08 689 62 560842 560841 C 628 0.00 1382 reject_low 123 ALIGNMENT 63 Y12-4d01.p1k chr04 899 762 1530351 1530488 C 138 83.33 1382 reject_low 234 ALIGNMENT 162 Y12-4d01.p1k chr12 930 654 1069750 1070026 C 277 87.36 1382|0,4 reject_low 319 ALIGNMENT 0 Y12-4d01.p1k chr12 761 755 1070027 1076264 C 7 0.00 1382 reject_low 325 ALIGNMENT 0 Y12-4d01.p1k chr14 62 725 1574 1573 F 664 0.00 1382 reject_low 131 ALIGNMENT 0 Y12-4d01.p1k chr16 592 62 946304 946303 C 531 0.00 1382 reject_low 84 ALIGNMENT 96 Y12-4d01.p1k chr09 582 764 2046 2228 F 183 86.34 1382 reject_low 196 ALIGNMENT 0 Y12-4d01.p1k chr05 888 647 574894 574893 C 242 0.00 1382 reject_low 296 ALIGNMENT 0 Y12-4d01.p1k chr09 62 761 1686 1685 F 700 0.00 1382 reject_low 198 ALIGNMENT 0 Y12-4d01.p1k chr02 62 580 1953 1952 F 519 0.00 1382 reject_low 292 ALIGNMENT 0 Y12-4d01.p1k chr16 592 62 946160 946159 C 531 0.00 1382 reject_low 212 ALIGNMENT 0 Y12-4d01.p1k chr05 62 653 1470 1469 F 592 0.00 1382 reject_low 137 ALIGNMENT 0 Y12-4d01.p1k chr04 581 62 1530417 1530416 C 520 0.00 1382 reject_low 104 ALIGNMENT 162 Y12-4d01.p1k chr13 654 930 1667 1943 F 277 87.36 1382 reject_low 99 ALIGNMENT 0 Y12-4d01.p1k chr04 888 661 1530087 1530086 C 228 0.00 1382 reject_low 281 ALIGNMENT 0 Y12-4d01.p1k chr07 581 62 1089107 1089106 C 520 0.00 1382 reject_low 265 ALIGNMENT 135 Y12-4d01.p1k chr12 987 690 1069731 1070026 C 298 82.89 1382|0,4 reject_low 317 ALIGNMENT 0 Y12-4d01.p1k chr09 621 888 2228 2227 F 268 0.00 1382 reject_low 309 ALIGNMENT 91 Y12-4d01.p1k chr12 972 726 1076446 1076689 C 247 80.16 1382 reject_low 129 ALIGNMENT 133 Y12-4d01.p1k chr16 930 726 946290 946494 C 205 89.27 1382 reject_low 118 ALIGNMENT 0 Y12-4d01.p1k chr08 584 62 560695 560694 C 523 0.00 1382 reject_low 164 ALIGNMENT 93 Y12-4d01.p1k chr08 790 593 560417 560614 C 198 84.34 1382 reject_low 203 ALIGNMENT 0 Y12-4d01.p1k chr12 62 725 1683 1682 F 664 0.00 1382 reject_low 117 ALIGNMENT 0 Y12-4d01.p1k chr02 62 581 1630 1629 F 520 0.00 1382 reject_low 87 ALIGNMENT 623 Y12-4d01.q1k chr02 799 36 4212 5007 C 764 94.37 1412 reject_low 12 ALIGNMENT 112 Y12-4d01.p1k chr02 585 899 1705 2019 F 315 80.32 1382 reject_low 159 ALIGNMENT 90 Y12-4d01.p1k chr10 593 781 2004 2192 F 189 84.66 1382 reject_low 205 ALIGNMENT 635 Y12-4d01.q1k chr12 799 36 4011 4806 C 764 94.90 1412 reject_low 11 ALIGNMENT 0 Y12-4d01.p1k chr08 62 580 1866 1865 F 519 0.00 1382 reject_low 308 ALIGNMENT 91 Y12-4d01.p1k chr16 726 972 1483 1726 F 247 80.16 1382 reject_low 133 ALIGNMENT 0 Y12-4d01.p1k chr14 827 888 1998 1997 F 62 0.00 1382 reject_low 175 ALIGNMENT 0 Y12-4d01.p1k chr08 888 838 560443 560442 C 51 0.00 1382 reject_low 164 ALIGNMENT 0 Y12-4d01.p1k chr12 592 62 1076355 1076354 C 531 0.00 1382 reject_low 319 ALIGNMENT 229 Y12-4d01.p1k chr12 582 930 7362 7710 F 349 89.97 1382 reject_low 35 ALIGNMENT 0 Y12-4d01.p1k chr12 791 797 2216 7325 F 7 0.00 1382 reject_low 322 ALIGNMENT 124 Y12-4d01.p1k chr05 582 905 1686 2009 F 324 81.17 1382 reject_low 139 ALIGNMENT 0 Y12-4d01.p1k chr16 62 584 1594 1593 F 523 0.00 1382 reject_low 149 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 1755 1754 F 520 0.00 1382 reject_low 31 ALIGNMENT 162 Y12-4d01.p1k chr16 618 972 1483 1834 F 355 83.66 1382 reject_low 69 ALIGNMENT 905 Y12-4d01.q1k chr12 36 1140 1072507 1073647 F 1105 94.21 1412 reject_low 6 ALIGNMENT 0 Y12-4d01.p1k chr07 584 62 1089284 1089283 C 523 0.00 1382 reject_low 145 ALIGNMENT 0 Y12-4d01.p1k chr16 791 888 1907 1906 F 98 0.00 1382 reject_low 211 ALIGNMENT 0 Y12-4d01.p1k chr08 637 888 1921 1920 F 252 0.00 1382 reject_low 308 ALIGNMENT 33 Y12-4d01.p1k chr12 646 581 1069602 1069667 C 66 84.85 1382 reject_low 300 ALIGNMENT 97 Y12-4d01.p1k chr08 582 827 1687 1932 F 246 82.11 1382 reject_low 197 ALIGNMENT 118 Y12-4d01.p1k chr05 582 903 1722 2043 F 322 80.75 1382 reject_low 150 ALIGNMENT 0 Y12-4d01.p1k chr09 765 888 2228 2227 F 124 0.00 1382 reject_low 196 ALIGNMENT 135 Y12-4d01.p1k chr04 987 690 1530193 1530488 C 298 82.89 1382 reject_low 54 ALIGNMENT 0 Y12-4d01.p1k chr12 888 647 1069603 1069602 C 242 0.00 1382 reject_low 300 ALIGNMENT 61 Y12-4d01.p1k chr15 754 581 1089229 1089402 C 174 80.46 1382 reject_low 247 ALIGNMENT 172 Y12-4d01.p1k chr12 582 903 7398 7719 F 322 86.34 1382 reject_low 91 ALIGNMENT 0 Y12-4d01.p1k chr12 62 592 7661 7660 F 531 0.00 1382 reject_low 284 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 1705 1704 F 520 0.00 1382 reject_low 77 ALIGNMENT 0 Y12-4d01.p1k chr02 653 888 2024 2023 F 236 0.00 1382 reject_low 292 ALIGNMENT 63 Y12-4d01.p1k chr14 762 899 1574 1711 F 138 83.33 1382 reject_low 240 ALIGNMENT 106 Y12-4d01.p1k chr06 726 930 893 1097 F 205 84.88 1382 reject_low 151 ALIGNMENT 142 Y12-4d01.p1k chr09 593 867 1949 2223 F 275 85.82 1382 reject_low 122 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 1957 1956 F 520 0.00 1382 reject_low 135 ALIGNMENT 155 Y12-4d01.p1k chr08 690 930 1651 1891 F 241 89.21 1382 reject_low 111 ALIGNMENT 0 Y12-4d01.p1k chr12 62 592 2126 2125 F 531 0.00 1382 reject_low 318 ALIGNMENT 0 Y12-4d01.p1k chr16 647 888 1907 1906 F 242 0.00 1382 reject_low 305 ALIGNMENT 170 Y12-4d01.p1k chr02 585 903 1597 1915 F 319 86.21 1382 reject_low 103 ALIGNMENT 162 Y12-4d01.p1k chr16 654 930 1483 1759 F 277 87.36 1382 reject_low 102 ALIGNMENT 229 Y12-4d01.p1k chr07 930 582 1089010 1089358 C 349 89.97 1382 reject_low 34 ALIGNMENT 214 Y12-4d01.p1k chr16 930 582 946002 946350 C 349 88.54 1382 reject_low 44 ALIGNMENT 127 Y12-4d01.p1k chr02 690 899 1486 1695 F 210 88.57 1382 reject_low 138 ALIGNMENT 0 Y12-4d01.p1k chr05 62 797 1470 1469 F 736 0.00 1382 reject_low 224 ALIGNMENT 54 Y12-4d01.p1k chr12 899 798 1076588 1076689 C 102 85.29 1382 reject_low 258 ALIGNMENT 229 Y12-4d01.p1k chr13 582 930 1703 2051 F 349 89.97 1382 reject_low 36 ALIGNMENT 107 Y12-4d01.p1k chr02 654 899 1486 1731 F 246 82.93 1382 reject_low 168 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946387 946386 C 520 0.00 1382 reject_low 32 ALIGNMENT 43 Y12-4d01.p1k chr15 660 593 1089251 1089318 C 68 89.71 1382 reject_low 288 ALIGNMENT 256 Y12-4d01.p1k chr02 582 986 1522 1924 F 405 89.14 1382 reject_low 25 ALIGNMENT 0 Y12-4d01.p1k chr15 592 62 1089427 1089426 C 531 0.00 1382 reject_low 217 ALIGNMENT 54 Y12-4d01.p1k chr14 798 899 1574 1675 F 102 85.29 1382 reject_low 260 ALIGNMENT 0 Y12-4d01.p1k chr05 62 725 1470 1469 F 664 0.00 1382 reject_low 158 ALIGNMENT 33 Y12-4d01.p1k chr07 646 581 1088970 1089035 C 66 84.85 1382 reject_low 297 ALIGNMENT 28 Y12-4d01.p1k chr09 829 899 1681 1751 F 71 80.28 1382 reject_low 313 ALIGNMENT 63 Y12-4d01.p1k chr12 899 762 1069889 1070026 C 138 83.33 1382 reject_low 325 ALIGNMENT 0 Y12-4d01.p1k chr12 689 62 1076690 1076689 C 628 0.00 1382 reject_low 57 ALIGNMENT 0 Y12-4d01.p1k chr14 697 888 1976 1975 F 192 0.00 1382 reject_low 268 ALIGNMENT 0 Y12-4d01.p1k chr08 761 62 560842 560841 C 700 0.00 1382 reject_low 237 ALIGNMENT 938 Y12-4d01.q1k chr10 1140 36 4988 6128 C 1105 95.20 1412 ambiguous_tel 3 ALIGNMENT 735 Y12-4d01.p1k chr15 986 32 1089251 1090203 C 955 92.77 1382 reject_low 7 ALIGNMENT 132 Y12-4d01.p1k chr08 898 585 560417 560730 C 314 82.48 1382 reject_low 125 ALIGNMENT 0 Y12-4d01.p1k chr13 647 888 2091 2090 F 242 0.00 1382 reject_low 302 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 7614 7613 F 520 0.00 1382 reject_low 266 ALIGNMENT 0 Y12-4d01.p1k chr08 797 62 560842 560841 C 736 0.00 1382 reject_low 257 ALIGNMENT 0 Y12-4d01.p1k chr08 592 62 560615 560614 C 531 0.00 1382 reject_low 203 ALIGNMENT 223 Y12-4d01.p1k chr05 582 986 1542 1944 F 405 86.67 1382 reject_low 26 ALIGNMENT 634 Y12-4d01.q1k chr16 36 799 943370 944166 F 764 94.90 1412 reject_low 13 ALIGNMENT 0 Y12-4d01.p1k chr12 592 62 1069800 1069799 C 531 0.00 1382 reject_low 216 ALIGNMENT 0 Y12-4d01.p1k chr05 868 888 1935 1934 F 21 0.00 1382 reject_low 141 ALIGNMENT 0 Y12-4d01.p1k chr05 797 62 575318 575317 C 736 0.00 1382 reject_low 255 ALIGNMENT 55 Y12-4d01.p1k chr05 696 582 574915 575029 C 115 85.22 1382 reject_low 264 ALIGNMENT 63 Y12-4d01.p1k chr06 654 867 893 1106 F 214 78.50 1382|0,10 reject_low 327 ALIGNMENT 0 Y12-4d01.p1k chr16 592 62 946052 946051 C 531 0.00 1382 reject_low 290 ALIGNMENT 0 Y12-4d01.p1k chr16 797 62 946495 946494 C 736 0.00 1382 reject_low 251 ALIGNMENT 0 Y12-4d01.p1k chr08 581 62 560590 560589 C 520 0.00 1382 reject_low 244 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946351 946350 C 520 0.00 1382 reject_low 44 ALIGNMENT 135 Y12-4d01.p1k chr07 987 690 1089099 1089394 C 298 82.89 1382 reject_low 56 ALIGNMENT 98 Y12-4d01.p1k chr04 837 585 1530089 1530341 C 253 81.82 1382 reject_low 192 ALIGNMENT 160 Y12-4d01.p1k chr15 972 618 1089302 1089653 C 355 83.10 1382 reject_low 75 ALIGNMENT 0 Y12-4d01.p1k chr08 62 725 1651 1650 F 664 0.00 1382 reject_low 28 ALIGNMENT 0 Y12-4d01.p1k chr12 697 888 7728 7727 F 192 0.00 1382 reject_low 266 ALIGNMENT 0 Y12-4d01.p1k chr09 62 797 1686 1685 F 736 0.00 1382 reject_low 248 ALIGNMENT 0 Y12-4d01.p1k chr14 62 584 1721 1720 F 523 0.00 1382 reject_low 184 ALIGNMENT 0 Y12-4d01.p1k chr07 689 62 1089395 1089394 C 628 0.00 1382 reject_low 56 ALIGNMENT 55 Y12-4d01.p1k chr12 582 696 2079 2193 F 115 85.22 1382|0,3 reject_low 316,320 ALIGNMENT 954 Y12-4d01.q1k chr05 1140 36 4620 5711 C 1105 96.20 1412 ambiguous_tel 1 ALIGNMENT 0 Y12-4d01.p1k chr06 807 888 1261 1260 F 82 0.00 1382 reject_low 278 ALIGNMENT 0 Y12-4d01.p1k chr15 592 62 1089319 1089318 C 531 0.00 1382 reject_low 288 ALIGNMENT 0 Y12-4d01.p1k chr10 782 888 2192 2191 F 107 0.00 1382 reject_low 205 ALIGNMENT 0 Y12-4d01.p1k chr09 62 689 1686 1685 F 628 0.00 1382 reject_low 19 ALIGNMENT 0 Y12-4d01.p1k chr08 592 62 560507 560506 C 531 0.00 1382 reject_low 307 ALIGNMENT 0 Y12-4d01.p1k chr13 791 888 2091 2090 F 98 0.00 1382 reject_low 209 ALIGNMENT 0 Y12-4d01.p1k chr08 581 62 560662 560661 C 520 0.00 1382 reject_low 160 ALIGNMENT 226 Y12-4d01.p1k chr04 930 582 1530104 1530452 C 349 89.68 1382 reject_low 40 ALIGNMENT 211 Y12-4d01.p1k chr05 582 930 1578 1926 F 349 88.25 1382 reject_low 46 ALIGNMENT 835 Y12-4d01.q1k chr05 36 1140 571152 572275 F 1105 92.67 1412 reject_low 10 ALIGNMENT 0 Y12-4d01.p1k chr10 62 653 1669 1668 F 592 0.00 1382 reject_low 53 ALIGNMENT 87 Y12-4d01.p1k chr12 790 593 1076265 1076462 C 198 83.33 1382 reject_low 323 ALIGNMENT 0 Y12-4d01.p1k chr07 888 647 1088971 1088970 C 242 0.00 1382 reject_low 297 ALIGNMENT 57 Y12-4d01.p1k chr02 581 724 1881 2024 F 144 81.94 1382 reject_low 252 ALIGNMENT 47 Y12-4d01.p1k chr06 593 806 1048 1261 F 214 76.17 1382 reject_low 278 ALIGNMENT 0 Y12-4d01.p1k chr12 694 693 2191 7329 F 0 0.00 1382 reject_low 316 ALIGNMENT 181 Y12-4d01.p1k chr12 593 903 1874 2184 F 311 87.78 1382 reject_low 85 ALIGNMENT 0 Y12-4d01.p1k chr12 647 888 7750 7749 F 242 0.00 1382 reject_low 299 ALIGNMENT 0 Y12-4d01.p1k chr10 62 581 1813 1812 F 520 0.00 1382 reject_low 80 ALIGNMENT 0 Y12-4d01.p1k chr16 62 617 1483 1482 F 556 0.00 1382 reject_low 69 ALIGNMENT 43 Y12-4d01.p1k chr07 660 593 1088992 1089059 C 68 89.71 1382 reject_low 283 ALIGNMENT 0 Y12-4d01.p1k chr13 62 584 1814 1813 F 523 0.00 1382 reject_low 183 ALIGNMENT 0 Y12-4d01.p1k chr15 581 62 1089366 1089365 C 520 0.00 1382 reject_low 275 ALIGNMENT 101 Y12-4d01.p1k chr14 585 837 1721 1973 F 253 82.21 1382 reject_low 184 ALIGNMENT 765 Y12-4d01.p1k chr02 20 972 921 1873 F 953 94.12 1382 reject_low 12 ALIGNMENT 55 Y12-4d01.p1k chr16 696 582 945984 946098 C 115 85.22 1382 reject_low 270 ALIGNMENT 28 Y12-4d01.p1k chr10 829 899 1664 1734 F 71 80.28 1382 reject_low 314 ALIGNMENT 0 Y12-4d01.p1k chr06 62 868 892 891 F 807 0.00 1382 reject_low 24 ALIGNMENT 0 Y12-4d01.p1k chr05 888 838 574919 574918 C 51 0.00 1382 reject_low 179 ALIGNMENT 0 Y12-4d01.p1k chr06 62 592 940 939 F 531 0.00 1382 reject_low 178 ALIGNMENT 0 Y12-4d01.p1k chr05 62 581 1686 1685 F 520 0.00 1382 reject_low 139 ALIGNMENT 0 Y12-4d01.p1k chr09 62 592 2165 2164 F 531 0.00 1382 reject_low 294 ALIGNMENT 618 Y12-4d01.q1k chr08 36 799 557825 558619 F 764 94.24 1412 reject_low 17 ALIGNMENT 0 Y12-4d01.p1k chr16 761 62 946495 946494 C 700 0.00 1382 reject_low 121 ALIGNMENT 0 Y12-4d01.p1k chr08 584 62 560731 560730 C 523 0.00 1382 reject_low 125 ALIGNMENT 162 Y12-4d01.p1k chr14 654 930 1574 1850 F 277 87.36 1382 reject_low 100 ALIGNMENT 0 Y12-4d01.p1k chr08 62 581 1687 1686 F 520 0.00 1382 reject_low 197 ALIGNMENT 0 Y12-4d01.p1k chr16 888 838 945988 945987 C 51 0.00 1382 reject_low 186 ALIGNMENT 0 Y12-4d01.p1k chr10 62 592 1932 1931 F 531 0.00 1382 reject_low 134 ALIGNMENT 62 Y12-4d01.p1k chr06 762 986 893 1115 F 225 77.33 1382 reject_low 166 ALIGNMENT 72 Y12-4d01.p1k chr05 593 827 1805 2039 F 235 79.15 1382 reject_low 222 ALIGNMENT 91 Y12-4d01.p1k chr05 972 726 575074 575317 C 247 80.16 1382 reject_low 127 ALIGNMENT 111 Y12-4d01.p1k chr10 726 899 1669 1842 F 174 89.66 1382 reject_low 162 ALIGNMENT 735 Y12-4d01.p1k chr12 986 32 1069624 1070576 C 955 92.77 1382 ambiguous_tel 0 ALIGNMENT 132 Y12-4d01.p1k chr10 582 817 1957 2192 F 236 87.71 1382 reject_low 135 ALIGNMENT 97 Y12-4d01.p1k chr05 582 882 1758 2058 F 301 79.40 1382 reject_low 191 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 1791 1790 F 520 0.00 1382 reject_low 39 ALIGNMENT 0 Y12-4d01.p1k chr05 771 888 2054 2053 F 118 0.00 1382 reject_low 277 ALIGNMENT 0 Y12-4d01.p1k chr05 828 888 2039 2038 F 61 0.00 1382 reject_low 222 ALIGNMENT 120 Y12-4d01.p1k chr07 898 585 1088970 1089283 C 314 81.21 1382 reject_low 145 ALIGNMENT 0 Y12-4d01.p1k chr12 584 62 1069916 1069915 C 523 0.00 1382 reject_low 153 ALIGNMENT 0 Y12-4d01.p1k chr05 653 62 575318 575317 C 592 0.00 1382 reject_low 96 ALIGNMENT 0 Y12-4d01.p1k chr10 62 828 1664 1663 F 767 0.00 1382 reject_low 314 ALIGNMENT 0 Y12-4d01.p1k chr12 62 584 1902 1901 F 523 0.00 1382 reject_low 142 ALIGNMENT 0 Y12-4d01.p1k chr04 725 62 1530489 1530488 C 664 0.00 1382 reject_low 126 ALIGNMENT 0 Y12-4d01.p1k chr13 697 888 2069 2068 F 192 0.00 1382 reject_low 267 ALIGNMENT 0 Y12-4d01.p1k chr14 838 888 1973 1972 F 51 0.00 1382 reject_low 184 ALIGNMENT 0 Y12-4d01.p1k chr12 62 584 7473 7472 F 523 0.00 1382 reject_low 182 ALIGNMENT 0 Y12-4d01.p1k chr12 888 791 1069603 1069602 C 98 0.00 1382 reject_low 216 ALIGNMENT 71 Y12-4d01.p1k chr06 798 972 893 1064 F 175 81.71 1382 reject_low 156 ALIGNMENT 135 Y12-4d01.p1k chr05 987 690 575022 575317 C 298 82.89 1382 reject_low 55 ALIGNMENT 0 Y12-4d01.p1k chr08 62 617 1651 1650 F 556 0.00 1382 reject_low 200 ALIGNMENT 136 Y12-4d01.p1k chr02 618 972 1486 1837 F 355 81.13 1382 reject_low 88 ALIGNMENT 0 Y12-4d01.p1k chr15 888 791 1089230 1089229 C 98 0.00 1382 reject_low 217 ALIGNMENT 51 Y12-4d01.p1k chr10 798 930 1669 1801 F 133 79.70 1382 reject_low 249 ALIGNMENT 0 Y12-4d01.p1k chr14 62 581 1862 1861 F 520 0.00 1382 reject_low 268 ALIGNMENT 0 Y12-4d01.p1k chr13 755 888 2091 2090 F 134 0.00 1382 reject_low 230 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1076618 1076617 C 520 0.00 1382 reject_low 106 ALIGNMENT 128 Y12-4d01.p1k chr08 930 690 560601 560841 C 241 85.48 1382 reject_low 123 ALIGNMENT 135 Y12-4d01.p1k chr15 987 690 1089358 1089653 C 298 82.89 1382 reject_low 60 ALIGNMENT 0 Y12-4d01.p1k chr14 755 888 1998 1997 F 134 0.00 1382 reject_low 231 ALIGNMENT 0 Y12-4d01.p1k chr15 584 62 1089507 1089506 C 523 0.00 1382 reject_low 195 ALIGNMENT 162 Y12-4d01.p1k chr13 618 972 1667 2018 F 355 83.66 1382 reject_low 67 ALIGNMENT 43 Y12-4d01.p1k chr10 582 673 2101 2192 F 92 84.78 1382 reject_low 279 ALIGNMENT 33 Y12-4d01.p1k chr13 581 646 2026 2091 F 66 84.85 1382 reject_low 302 ALIGNMENT 0 Y12-4d01.p1k chr12 888 661 1069625 1069624 C 228 0.00 1382 reject_low 285 ALIGNMENT 635 Y12-4d01.q1k chr13 799 36 3887 4682 C 764 94.90 1412 reject_low 14 ALIGNMENT 0 Y12-4d01.p1k chr16 62 581 1771 1770 F 520 0.00 1382 reject_low 269 ALIGNMENT 208 Y12-4d01.p1k chr09 582 930 1866 2214 F 349 87.97 1382 reject_low 51 ALIGNMENT 0 Y12-4d01.p1k chr07 888 791 1088971 1088970 C 98 0.00 1382 reject_low 207 ALIGNMENT 0 Y12-4d01.p1k chr06 62 592 976 975 F 531 0.00 1382 reject_low 223 ALIGNMENT 0 Y12-4d01.p1k chr16 888 791 945963 945962 C 98 0.00 1382 reject_low 212 ALIGNMENT 54 Y12-4d01.p1k chr13 798 899 1667 1768 F 102 85.29 1382 reject_low 259 ALIGNMENT 37 Y12-4d01.p1k chr08 660 593 560439 560506 C 68 86.76 1382 reject_low 307 ALIGNMENT 0 Y12-4d01.p1k chr13 661 888 2069 2068 F 228 0.00 1382 reject_low 286 ALIGNMENT 0 Y12-4d01.p1k chr16 888 697 945985 945984 C 192 0.00 1382 reject_low 270 ALIGNMENT 64 Y12-4d01.p1k chr14 581 754 1825 1998 F 174 81.03 1382 reject_low 231 ALIGNMENT 204 Y12-4d01.p1k chr09 654 933 1686 1965 F 280 92.14 1382 reject_low 52 ALIGNMENT 64 Y12-4d01.p1k chr12 581 754 7577 7750 F 174 81.03 1382 reject_low 229 ALIGNMENT 38 Y12-4d01.p1k chr02 581 652 1953 2024 F 72 86.11 1382 reject_low 292 ALIGNMENT 0 Y12-4d01.p1k chr05 888 827 574894 574893 C 62 0.00 1382 reject_low 170 ALIGNMENT 0 Y12-4d01.p1k chr06 62 761 893 892 F 700 0.00 1382 reject_low 166 ALIGNMENT 0 Y12-4d01.p1k chr08 838 888 1906 1905 F 51 0.00 1382 reject_low 16 ALIGNMENT 0 Y12-4d01.p1k chr08 62 653 1651 1650 F 592 0.00 1382 reject_low 136 ALIGNMENT 65 Y12-4d01.p1k chr09 582 728 2082 2228 F 147 83.67 1382 reject_low 226 ALIGNMENT 257 Y12-4d01.p1k chr10 618 993 1669 2041 F 376 90.96 1382 reject_low 23 ALIGNMENT 0 Y12-4d01.p1k chr12 647 888 2215 2214 F 242 0.00 1382 reject_low 298 ALIGNMENT 0 Y12-4d01.p1k chr12 581 62 1076654 1076653 C 520 0.00 1382 reject_low 42 ALIGNMENT 0 Y12-4d01.p1k chr09 801 888 2228 2227 F 88 0.00 1382 reject_low 169 ALIGNMENT 102 Y12-4d01.p1k chr16 826 582 945962 946206 C 245 82.86 1382 reject_low 177 ALIGNMENT 91 Y12-4d01.p1k chr14 726 972 1574 1817 F 247 80.16 1382 reject_low 131 ALIGNMENT 0 Y12-4d01.p1k chr14 62 617 1574 1573 F 556 0.00 1382 reject_low 68 ALIGNMENT 0 Y12-4d01.p1k chr12 62 617 7326 7325 F 556 0.00 1382 reject_low 66 ALIGNMENT 135 Y12-4d01.p1k chr16 690 987 1483 1778 F 298 82.89 1382 reject_low 61 ALIGNMENT 64 Y12-4d01.p1k chr16 754 581 945962 946135 C 174 81.03 1382 reject_low 233 ALIGNMENT 0 Y12-4d01.p1k chr08 581 62 560554 560553 C 520 0.00 1382 reject_low 276 ALIGNMENT 0 Y12-4d01.p1k chr05 62 617 1470 1469 F 556 0.00 1382 reject_low 21 ALIGNMENT 0 Y12-4d01.p1k chr13 62 581 1739 1738 F 520 0.00 1382 reject_low 92 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 1794 1793 F 520 0.00 1382 reject_low 49 ALIGNMENT 0 Y12-4d01.p1k chr04 581 62 1530201 1530200 C 520 0.00 1382 reject_low 273 ALIGNMENT 91 Y12-4d01.p1k chr12 726 972 7326 7569 F 247 80.16 1382 reject_low 320 ALIGNMENT 199 Y12-4d01.p1k chr16 972 582 946035 946422 C 391 85.17 1382 reject_low 30 ALIGNMENT 0 Y12-4d01.p1k chr07 725 62 1089395 1089394 C 664 0.00 1382 reject_low 128 ALIGNMENT 169 Y12-4d01.p1k chr12 903 582 1076296 1076617 C 322 86.02 1382 reject_low 106 ALIGNMENT 92 Y12-4d01.p1k chr08 987 726 560582 560841 C 262 79.39 1382 reject_low 114 ALIGNMENT 172 Y12-4d01.p1k chr07 903 582 1089001 1089322 C 322 86.34 1382 reject_low 90 ALIGNMENT 0 Y12-4d01.p1k chr02 62 592 1821 1820 F 531 0.00 1382 reject_low 214 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 7398 7397 F 520 0.00 1382 reject_low 91 ALIGNMENT 0 Y12-4d01.p1k chr12 62 797 1683 1682 F 736 0.00 1382 reject_low 250 ALIGNMENT 0 Y12-4d01.p1k chr08 888 661 560440 560439 C 228 0.00 1382 reject_low 307 ALIGNMENT 0 Y12-4d01.p1k chr09 62 576 1897 1896 F 515 0.00 1382 reject_low 62 ALIGNMENT 0 Y12-4d01.p1k chr08 888 647 560418 560417 C 242 0.00 1382 reject_low 311 ALIGNMENT 0 Y12-4d01.p1k chr09 62 581 2046 2045 F 520 0.00 1382 reject_low 196 ALIGNMENT 120 Y12-4d01.p1k chr14 585 898 1685 1998 F 314 81.21 1382 reject_low 148 ALIGNMENT 0 Y12-4d01.p1k chr08 888 697 560440 560439 C 192 0.00 1382 reject_low 276 ALIGNMENT 154 Y12-4d01.p1k chr02 593 903 1677 1987 F 311 84.89 1382 reject_low 115 ALIGNMENT 184 Y12-4d01.p1k chr16 903 593 945993 946303 C 311 88.10 1382 reject_low 84 ALIGNMENT 40 Y12-4d01.p1k chr08 593 660 1842 1909 F 68 88.24 1382 reject_low 293 ALIGNMENT 172 Y12-4d01.p1k chr13 582 903 1739 2060 F 322 86.34 1382 reject_low 92 ALIGNMENT 115 Y12-4d01.p1k chr05 690 899 1470 1679 F 210 86.67 1382 reject_low 157 ALIGNMENT 0 Y12-4d01.p1k chr16 62 581 1519 1518 F 520 0.00 1382 reject_low 38 ALIGNMENT 0 Y12-4d01.p1k chr12 657 658 1070023 1076289 C 0 0.00 1382 reject_low 319 ALIGNMENT 101 Y12-4d01.p1k chr13 585 837 1814 2066 F 253 82.21 1382 reject_low 183 ALIGNMENT 55 Y12-4d01.p1k chr16 582 696 1771 1885 F 115 85.22 1382 reject_low 269 ALIGNMENT 0 Y12-4d01.p1k chr08 62 581 1723 1722 F 520 0.00 1382 reject_low 220 ALIGNMENT 0 Y12-4d01.p1k chr16 581 62 946279 946278 C 520 0.00 1382 reject_low 140 ALIGNMENT 0 Y12-4d01.p1k chr04 592 62 1530154 1530153 C 531 0.00 1382 reject_low 281 ALIGNMENT 0 Y12-4d01.p1k chr15 580 62 1089295 1089294 C 519 0.00 1382 reject_low 304 ALIGNMENT 0 Y12-4d01.p1k chr14 62 581 1646 1645 F 520 0.00 1382 reject_low 93 ALIGNMENT 76 Y12-4d01.p1k chr08 582 791 1723 1932 F 210 80.95 1382 reject_low 220 ALIGNMENT 0 Y12-4d01.p1k chr12 584 62 1069880 1069879 C 523 0.00 1382 reject_low 193 ALIGNMENT 0 Y12-4d01.p1k chr13 62 689 1667 1666 F 628 0.00 1382 reject_low 58 ALIGNMENT 229 Y12-4d01.p1k chr14 582 930 1610 1958 F 349 89.97 1382 reject_low 37 ALIGNMENT 0 Y12-4d01.p1k chr12 62 581 1971 1970 F 520 0.00 1382 reject_low 172 ALIGNMENT 31 Y12-4d01.p1k chr08 646 593 560417 560470 C 54 87.04 1382 reject_low 311 ALIGNMENT 0 Y12-4d01.p1k chr06 771 888 1261 1260 F 118 0.00 1382 reject_low 310 ALIGNMENT 175 Y12-4d01.p1k chr09 582 972 1794 2181 F 391 83.12 1382 reject_low 49 ALIGNMENT 117 Y12-4d01.p1k chr12 898 585 1069602 1069915 C 314 80.89 1382 reject_low 153 ALIGNMENT 753 Y12-4d01.p1k chr08 986 32 560439 561391 C 955 93.40 1382 reject_low 17 ALIGNMENT 271 Y12-4d03.q1k chr15 68 451 624207 624609 F 384 93.49 786 accept 0 ALIGNMENT 974 Y12-4d03.p1k chr15 1131 19 628350 629467 C 1113 96.77 1362 accept 0 ALIGNMENT 86 Y12-4d04.q1k chr06 888 718 161804 161975 C 171 85.38 1377 reject_low 5 ALIGNMENT 85 Y12-4d04.q1k chr11 876 718 517113 517272 C 159 86.79 1377 reject_low 9 ALIGNMENT 72 Y12-4d04.q1k chr12 467 539 214884 214956 F 73 100.00 1377 reject_low 3 ALIGNMENT 87 Y12-4d04.q1k chr13 718 866 184324 184471 F 149 87.92 1377 reject_low 11 ALIGNMENT 0 Y12-4d04.q1k chr10 62 719 483711 483710 F 658 0.00 1377 reject_low 8 ALIGNMENT 0 Y12-4d04.q1k chr03 62 750 149663 149662 F 689 0.00 1377 reject_low 23 ALIGNMENT 87 Y12-4d04.q1k chr10 720 884 483711 483876 F 165 86.06 1377 reject_low 8 ALIGNMENT 84 Y12-4d04.q1k chr16 720 866 850161 850306 F 147 87.76 1377 reject_low 18 ALIGNMENT 31 Y12-4d04.q1k chr10 853 776 541050 541127 C 78 79.49 1377 reject_low 25 ALIGNMENT 0 Y12-4d04.q1k chr16 62 719 56613 56612 F 658 0.00 1377 reject_low 7 ALIGNMENT 0 Y12-4d04.q1k chr15 62 464 854182 854181 F 403 0.00 1377 reject_low 1 ALIGNMENT 72 Y12-4d04.q1k chr07 539 467 794422 794494 C 73 100.00 1377 reject_low 2 ALIGNMENT 0 Y12-4d04.q1k chr06 717 62 161976 161975 C 656 0.00 1377 reject_low 5 ALIGNMENT 0 Y12-4d04.q1k chr01 465 62 166342 166341 C 404 0.00 1377 reject_low 20,21 ALIGNMENT 88 Y12-4d04.q1k chr01 885 720 165836 166002 C 166 86.14 1377 reject_low 21 ALIGNMENT 892 Y12-4d04.q1k chr05 35 1134 311582 312699 F 1100 94.36 1377 accept 0 ALIGNMENT 0 Y12-4d04.q1k chr13 719 62 378460 378459 C 658 0.00 1377 reject_low 16 ALIGNMENT 0 Y12-4d04.q1k chr04 62 717 803054 803053 F 656 0.00 1377 reject_low 13 ALIGNMENT 0 Y12-4d04.q1k chr13 62 717 184324 184323 F 656 0.00 1377 reject_low 11 ALIGNMENT 88 Y12-4d04.q1k chr01 885 720 160248 160414 C 166 86.14 1377 reject_low 20 ALIGNMENT 0 Y12-4d04.q1k chr16 62 719 844570 844569 F 658 0.00 1377 reject_low 17 ALIGNMENT 57 Y12-4d04.q1k chr03 751 850 149663 149762 F 100 88.00 1377 reject_low 23 ALIGNMENT 88 Y12-4d04.q1k chr12 885 720 475984 476150 C 166 86.14 1377 reject_low 6 ALIGNMENT 0 Y12-4d04.q1k chr07 846 540 794423 794422 C 307 0.00 1377 reject_low 2 ALIGNMENT 84 Y12-4d04.q1k chr16 720 866 844570 844715 F 147 87.76 1377 reject_low 17 ALIGNMENT 0 Y12-4d04.q1k chr01 719 541 160415 166266 C 179 0.00 1377 reject_low 20 ALIGNMENT 0 Y12-4d04.q1k chr07 62 717 402116 402115 F 656 0.00 1377 reject_low 4 ALIGNMENT 74 Y12-4d04.q1k chr01 540 466 166267 166341 C 75 100.00 1377 reject_low 20,21 ALIGNMENT 74 Y12-4d04.q1k chr15 465 539 854182 854256 F 75 100.00 1377 reject_low 1 ALIGNMENT 52 Y12-4d04.q1k chr03 885 776 168604 168714 C 110 83.64 1377 reject_low 22 ALIGNMENT 84 Y12-4d04.q1k chr13 866 720 378314 378459 C 147 87.76 1377 reject_low 16 ALIGNMENT 87 Y12-4d04.q1k chr07 866 718 823010 823157 C 149 87.92 1377 reject_low 10 ALIGNMENT 0 Y12-4d04.q1k chr12 62 466 214884 214883 F 405 0.00 1377 reject_low 3 ALIGNMENT 82 Y12-4d04.q1k chr04 718 885 803054 803221 F 168 85.12 1377 reject_low 13 ALIGNMENT 0 Y12-4d04.q1k chr03 775 62 168715 168714 C 714 0.00 1377 reject_low 22 ALIGNMENT 0 Y12-4d04.q1k chr03 62 717 151671 151670 F 656 0.00 1377 reject_low 12 ALIGNMENT 0 Y12-4d04.q1k chr03 717 62 124309 124308 C 656 0.00 1377 reject_low 19 ALIGNMENT 0 Y12-4d04.q1k chr11 717 62 517273 517272 C 656 0.00 1377 reject_low 9 ALIGNMENT 961 Y12-4d04.p1k chr05 1150 19 315757 316898 C 1132 96.73 1377 accept 0 ALIGNMENT 0 Y12-4d04.q1k chr12 719 62 476151 476150 C 658 0.00 1377 reject_low 6 ALIGNMENT 83 Y12-4d04.q1k chr07 718 905 402116 402303 F 188 82.98 1377 reject_low 4 ALIGNMENT 0 Y12-4d04.q1k chr07 717 62 823158 823157 C 656 0.00 1377 reject_low 10 ALIGNMENT 88 Y12-4d04.q1k chr03 718 850 151671 151803 F 133 90.98 1377 reject_low 12 ALIGNMENT 0 Y12-4d04.q1k chr12 719 62 215257 215256 C 658 0.00 1377 reject_low 15 ALIGNMENT 37 Y12-4d04.q1k chr12 776 846 941403 941472 F 71 85.92 1377 reject_low 24 ALIGNMENT 0 Y12-4d04.q1k chr12 540 846 214956 214955 F 307 0.00 1377 reject_low 3 ALIGNMENT 0 Y12-4d04.q1k chr01 719 541 166003 166266 C 179 0.00 1377 reject_low 21 ALIGNMENT 79 Y12-4d04.q1k chr10 718 886 540833 541002 F 169 83.43 1377 reject_low 14 ALIGNMENT 0 Y12-4d04.q1k chr07 466 62 794495 794494 C 405 0.00 1377 reject_low 2 ALIGNMENT 0 Y12-4d04.q1k chr10 62 717 540833 540832 F 656 0.00 1377 reject_low 14 ALIGNMENT 88 Y12-4d04.q1k chr16 720 885 56613 56779 F 166 86.14 1377 reject_low 7 ALIGNMENT 0 Y12-4d04.q1k chr10 775 62 541128 541127 C 714 0.00 1377 reject_low 25 ALIGNMENT 78 Y12-4d04.q1k chr03 885 718 124140 124308 C 168 83.93 1377 reject_low 19 ALIGNMENT 0 Y12-4d04.q1k chr12 62 775 941403 941402 F 714 0.00 1377 reject_low 24 ALIGNMENT 0 Y12-4d04.q1k chr15 540 846 854256 854255 F 307 0.00 1377 reject_low 1 ALIGNMENT 84 Y12-4d04.q1k chr12 866 720 215111 215256 C 147 87.76 1377 reject_low 15 ALIGNMENT 0 Y12-4d04.q1k chr16 62 719 850161 850160 F 658 0.00 1377 reject_low 18 ALIGNMENT 975 Y12-4d06.q1k chr15 32 1183 1018126 1019271 F 1152 95.57 1373 accept 0 ALIGNMENT 20 Y12-4d06.p1k chr01 240 285 49148 49193 F 46 82.61 1415 reject_low 1 ALIGNMENT 1038 Y12-4d06.p1k chr15 1223 24 1021818 1023033 C 1200 96.67 1415 accept 0 ALIGNMENT 26 Y12-4d06.p1k chr01 1001 1078 49915 49994 F 78 79.49 1415 reject_low 1 ALIGNMENT 0 Y12-4d06.p1k chr01 286 1000 49194 49914 F 715 0.00 1415 reject_low 1 ALIGNMENT 0 Y12-4d06.p1k chr01 62 239 49148 49147 F 178 0.00 1415 reject_low 1 ALIGNMENT 859 Y12-4d07.q1k chr02 39 1143 169522 170643 F 1105 94.12 1341 accept 0 ALIGNMENT 923 Y12-4d07.p1k chr02 1084 20 172327 173407 C 1065 96.71 1376 accept 0 ALIGNMENT 905 Y12-4d08.p1k chr12 1070 19 845519 846583 C 1052 96.77 1324 accept_chi 1 ALIGNMENT 925 Y12-4d08.q1k chr12 1120 35 927970 929057 C 1086 95.95 1413 accept_chi 0 ALIGNMENT 1030 Y12-4d09.p1k chr05 26 1227 455937 457154 F 1202 96.51 1430 accept_chi 0 ALIGNMENT 982 Y12-4d09.q1k chr15 1180 34 365719 366878 C 1147 96.51 1349 accept_chi 1 ALIGNMENT 992 Y12-4d10.p1k chr07 1110 19 515899 516997 C 1092 97.53 1385 accept 0 ALIGNMENT 1046 Y12-4d13.p1k chr11 1186 16 317715 318890 C 1171 97.35 1387 accept 0 ALIGNMENT 887 Y12-4d13.q1k chr11 36 1129 315759 316868 F 1094 95.25 1337 accept 0 ALIGNMENT 816 Y12-4d14.p1k chr14 17 999 56473 57468 F 983 95.32 1300 accept 0 ALIGNMENT 728 Y12-4d14.q1k chr14 1016 35 61014 61998 C 982 92.77 1393 accept 0 ALIGNMENT 35 Y12-4d14.q1k chr15 75 35 92025 92065 C 41 95.12 1393 reject_low 1 ALIGNMENT 1049 Y12-4d16.p1k chr05 1228 22 120517 121729 C 1207 96.52 1400 accept 0 ALIGNMENT 895 Y12-4d16.q1k chr05 35 1096 117868 118951 F 1062 95.67 1357 accept 0 ALIGNMENT 0 Y12-4d17.p1k chr12 435 837 482162 482161 F 403 0.00 1371 reject_low 4 ALIGNMENT 119 Y12-4d17.p1k chr12 316 434 485696 485814 F 119 100.00 1371 reject_low 5 ALIGNMENT 0 Y12-4d17.p1k chr12 62 315 485696 485695 F 254 0.00 1371 reject_low 5 ALIGNMENT 0 Y12-4d17.p1k chr12 62 315 489348 489347 F 254 0.00 1371 reject_low 2 ALIGNMENT 0 Y12-4d17.p1k chr12 62 315 482044 482043 F 254 0.00 1371 reject_low 4 ALIGNMENT 0 Y12-4d17.p1k chr12 435 837 472582 472581 F 403 0.00 1371 reject_low 3 ALIGNMENT 0 Y12-4d17.p1k chr12 435 837 485814 485813 F 403 0.00 1371 reject_low 5 ALIGNMENT 0 Y12-4d17.p1k chr12 435 837 468930 468929 F 403 0.00 1371 reject_low 1 ALIGNMENT 396 Y12-4d17.p1k chr12 17 434 468512 468930 F 418 99.28 1371 reject_low 1 ALIGNMENT 822 Y12-4d17.p1k chr12 17 1214 459375 460625 F 1198 91.74 1371 accept 0 ALIGNMENT 128 Y12-4d17.p1k chr12 316 449 489348 489481 F 134 98.51 1371 reject_low 2 ALIGNMENT 0 Y12-4d17.p1k chr12 450 837 489481 489480 F 388 0.00 1371 reject_low 2 ALIGNMENT 0 Y12-4d17.p1k chr12 62 315 472464 472463 F 254 0.00 1371 reject_low 3 ALIGNMENT 119 Y12-4d17.p1k chr12 316 434 472464 472582 F 119 100.00 1371 reject_low 3 ALIGNMENT 119 Y12-4d17.p1k chr12 316 434 482044 482162 F 119 100.00 1371 reject_low 4 ALIGNMENT 1020 Y12-4d18.q1k chr15 34 1317 886326 887624 F 1284 94.78 1439 accept 0 ALIGNMENT 943 Y12-4d18.p1k chr15 1122 16 891352 892459 C 1107 96.21 1402 accept 0 ALIGNMENT 1066 Y12-4d19.p1k chr06 23 1304 189123 190409 F 1282 95.63 1399 accept 0 ALIGNMENT 118 Y12-4d19.q1k chr06 369 191 194451 194640 C 179 92.18 956 accept 0 ALIGNMENT 0 Y12-4d20.p1k chr07 62 456 118860 118859 F 395 0.00 1349 reject_low 1 ALIGNMENT 46 Y12-4d20.p1k chr07 457 633 118860 119036 F 177 75.71 1349 reject_low 1 ALIGNMENT 0 Y12-4d20.p1k chr05 529 62 88418 88417 C 468 0.00 1349 reject_low 2 ALIGNMENT 0 Y12-4d20.p1k chr07 634 834 119036 119035 F 201 0.00 1349 reject_low 1 ALIGNMENT 25 Y12-4d20.p1k chr05 718 530 88229 88417 C 189 71.43 1349 reject_low 2 ALIGNMENT 0 Y12-4d20.p1k chr05 834 719 88230 88229 C 116 0.00 1349 reject_low 2 ALIGNMENT 979 Y12-4d20.p1k chr02 1221 17 626691 627915 C 1205 94.77 1349 accept 0 ALIGNMENT 789 Y12-4d20.q1k chr02 35 963 623079 624009 F 929 95.69 1154 accept 0 ALIGNMENT 979 Y12-4d21.p1k chr14 1095 22 693157 694220 C 1074 98.04 1355 accept 0 ALIGNMENT 1043 Y12-4d22.q1k chr12 36 1243 920096 921299 F 1208 95.70 1371 accept 0 ALIGNMENT 1055 Y12-4d22.p1k chr12 1185 24 923214 924376 C 1162 97.76 1321 accept 0 ALIGNMENT 1018 Y12-4d23.p1k chr15 21 1218 670845 672034 F 1198 95.83 1326 accept 0 ALIGNMENT 1024 Y12-4d23.q1k chr15 1246 38 674388 675594 C 1209 96.28 1320 accept 0 ALIGNMENT 1064 Y12-4d24.p1k chr02 1227 18 431123 432343 C 1210 97.02 1284 accept 0 ALIGNMENT 340 Y12-4d24.q1k chr08 896 46 552127 552978 C 851 80.14 1338 reject_low 3 ALIGNMENT 465 Y12-4d24.q1k chr02 59 938 430079 430959 F 880 84.43 1338 reject_low 1 ALIGNMENT 353 Y12-4d24.q1k chr01 929 46 225446 226330 C 884 80.09 1338 reject_low 2 ALIGNMENT 1084 Y12-4d24.q1k chr02 35 1268 428205 429439 F 1234 96.52 1338 accept 0 ALIGNMENT 917 Y12-4e02.p1k chr12 28 1012 465859 466857 F 985 98.48 1331 accept 1 ALIGNMENT 917 Y12-4e02.p1k chr12 28 1012 456722 457720 F 985 98.48 1331 accept 0 ALIGNMENT 1016 Y12-4e03.p1k chr16 1212 26 385828 387028 C 1187 96.38 1420 accept 0 ALIGNMENT 888 Y12-4e03.q1k chr16 36 1019 382471 383467 F 984 97.26 1287 accept 0 ALIGNMENT 1038 Y12-4e04.p1k chr12 23 1173 603553 604713 F 1151 97.48 1406 accept 0 ALIGNMENT 895 Y12-4e04.q1k chr12 1138 36 607561 608691 C 1103 94.92 1382 accept 0 ALIGNMENT 976 Y12-4e05.q1k chr13 36 1217 342150 343345 F 1182 94.92 1372 accept 0 ALIGNMENT 1051 Y12-4e05.p1k chr13 1211 23 347022 348219 C 1189 96.64 1456 accept 0 ALIGNMENT 935 Y12-4e06.p1k chr11 21 1080 627285 628357 F 1060 97.55 1345 accept_chi 0 ALIGNMENT 859 Y12-4e06.q1k chr11 1066 31 257158 258205 C 1036 95.27 1258 accept_chi 1 ALIGNMENT 715 Y12-4e07.p1k chr14 1016 44 205033 206007 C 973 92.09 1385 accept 0 ALIGNMENT 966 Y12-4e07.q1k chr14 35 1161 200606 201752 F 1127 96.27 1373 accept 0 ALIGNMENT 1056 Y12-4e09.p1k chr15 1171 23 831184 832345 C 1149 97.74 1429 accept 0 ALIGNMENT 1004 Y12-4e09.q1k chr15 37 1160 827559 828691 F 1124 96.80 1356 accept 0 ALIGNMENT 936 Y12-4e10.q1k chr09 1180 32 28295 29465 C 1149 95.04 1355 accept 0 ALIGNMENT 0 Y12-4e10.p1k chr09 289 845 25663 25662 F 557 0.00 1437 reject_low 6 ALIGNMENT 155 Y12-4e10.p1k chr09 21 296 25474 25755 F 276 87.32 1437 reject_low 5 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25587 25586 F 549 0.00 1437 reject_low 7 ALIGNMENT 0 Y12-4e10.p1k chr08 438 62 541698 541697 C 377 0.00 1437 reject_low 3 ALIGNMENT 0 Y12-4e10.p1k chr09 222 845 25878 25877 F 624 0.00 1437 reject_low 11 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25629 25628 F 549 0.00 1437 reject_low 2 ALIGNMENT 139 Y12-4e10.p1k chr09 24 292 25561 25835 F 269 85.87 1437 reject_low 8 ALIGNMENT 0 Y12-4e10.p1k chr15 515 845 31632 31631 F 331 0.00 1437 reject_low 1 ALIGNMENT 45 Y12-4e10.p1k chr09 108 288 25309 25495 F 181 77.35 1437 reject_low 15 ALIGNMENT 0 Y12-4e10.p1k chr09 62 238 25362 25361 F 177 0.00 1437 reject_low 17 ALIGNMENT 0 Y12-4e10.p1k chr09 169 845 25909 25908 F 677 0.00 1437 reject_low 16 ALIGNMENT 79 Y12-4e10.p1k chr09 66 296 25309 25545 F 231 79.65 1437 reject_low 12 ALIGNMENT 57 Y12-4e10.p1k chr09 24 214 25729 25913 F 191 79.06 1437 reject_low 13 ALIGNMENT 68 Y12-4e10.p1k chr15 320 514 31443 31632 F 195 80.00 1437 reject_low 1 ALIGNMENT 173 Y12-4e10.p1k chr09 21 288 25516 25789 F 268 89.93 1437 reject_low 4 ALIGNMENT 99 Y12-4e10.p1k chr09 21 221 25684 25878 F 201 86.07 1437 reject_low 11 ALIGNMENT 0 Y12-4e10.p1k chr09 135 845 25917 25916 F 711 0.00 1437 reject_low 14 ALIGNMENT 29 Y12-4e10.p1k chr09 135 296 25294 25461 F 162 75.31 1437 reject_low 18 ALIGNMENT 0 Y12-4e10.p1k chr09 62 134 25294 25293 F 73 0.00 1437 reject_low 18 ALIGNMENT 40 Y12-4e10.p1k chr09 17 134 25805 25917 F 118 81.36 1437 reject_low 14 ALIGNMENT 0 Y12-4e10.p1k chr15 62 319 31443 31442 F 258 0.00 1437 reject_low 1 ALIGNMENT 139 Y12-4e10.p1k chr09 37 296 25322 25587 F 260 86.54 1437 reject_low 7 ALIGNMENT 126 Y12-4e10.p1k chr09 24 296 25435 25713 F 273 83.52 1437 reject_low 9 ALIGNMENT 0 Y12-4e10.p1k chr08 845 492 541646 541645 C 354 0.00 1437 reject_low 3 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25755 25754 F 549 0.00 1437 reject_low 5 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25545 25544 F 549 0.00 1437 reject_low 12 ALIGNMENT 896 Y12-4e10.p1k chr09 21 1131 25642 26756 F 1111 94.42 1437 accept 0 ALIGNMENT 0 Y12-4e10.p1k chr09 289 845 25789 25788 F 557 0.00 1437 reject_low 4 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25713 25712 F 549 0.00 1437 reject_low 9 ALIGNMENT 30 Y12-4e10.p1k chr09 239 296 25362 25419 F 58 84.48 1437 reject_low 17 ALIGNMENT 196 Y12-4e10.p1k chr09 17 296 25343 25629 F 280 91.79 1437 reject_low 2 ALIGNMENT 0 Y12-4e10.p1k chr09 289 845 25495 25494 F 557 0.00 1437 reject_low 15 ALIGNMENT 0 Y12-4e10.p1k chr09 293 845 25835 25834 F 553 0.00 1437 reject_low 8 ALIGNMENT 36 Y12-4e10.p1k chr09 21 168 25768 25909 F 148 77.70 1437 reject_low 16 ALIGNMENT 0 Y12-4e10.p1k chr09 258 845 25842 25841 F 588 0.00 1437 reject_low 10 ALIGNMENT 129 Y12-4e10.p1k chr09 24 257 25603 25842 F 234 86.75 1437 reject_low 10 ALIGNMENT 0 Y12-4e10.p1k chr09 62 107 25309 25308 F 46 0.00 1437 reject_low 15 ALIGNMENT 142 Y12-4e10.p1k chr09 24 288 25393 25663 F 265 86.04 1437 reject_low 6 ALIGNMENT 40 Y12-4e10.p1k chr08 491 439 541645 541697 C 53 92.45 1437 reject_low 3 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25461 25460 F 549 0.00 1437 reject_low 18 ALIGNMENT 0 Y12-4e10.p1k chr09 297 845 25419 25418 F 549 0.00 1437 reject_low 17 ALIGNMENT 0 Y12-4e10.p1k chr09 215 845 25913 25912 F 631 0.00 1437 reject_low 13 ALIGNMENT 984 Y12-4e11.p1k chr05 17 1158 46094 47250 F 1142 96.85 1384 accept 0 ALIGNMENT 967 Y12-4e11.q1k chr05 1213 41 51541 52733 C 1173 96.16 1347 accept 0 ALIGNMENT 918 Y12-4e12.q1k chr14 36 1083 409079 410140 F 1048 96.56 1323 accept 0 ALIGNMENT 919 Y12-4e12.p1k chr14 1060 24 413102 414152 C 1037 95.95 1372 accept 0 ALIGNMENT 0 Y12-4e13.q1k chrm 155 228 68717 68716 F 74 0.00 228 ambiguous 1 ALIGNMENT 0 Y12-4e13.q1k chrm 228 106 55497 55496 C 123 0.00 228 ambiguous 4 ALIGNMENT 0 Y12-4e13.p1k chrm 89 62 68718 68717 C 28 0.00 242 ambiguous 0 ALIGNMENT 0 Y12-4e13.p1k chrm 161 176 55518 55521 F 16 0.00 242 ambiguous 2 ALIGNMENT 0 Y12-4e13.p1k chrm 242 204 68605 68604 C 39 0.00 242 ambiguous 0 ALIGNMENT 29 Y12-4e13.q1k chrm 82 116 84214 84248 F 35 97.14 228 ambiguous 3 ALIGNMENT 0 Y12-4e13.q1k chrm 73 81 84217 84213 F 9 0.00 228 ambiguous 3 ALIGNMENT 21 Y12-4e13.p1k chrm 139 160 55496 55517 F 22 100.00 242 ambiguous 2 ALIGNMENT 0 Y12-4e13.q1k chrm 83 68 55518 55521 C 16 0.00 228 ambiguous 4 ALIGNMENT 0 Y12-4e13.p1k chrm 62 138 55496 55495 F 77 0.00 242 ambiguous 2 ALIGNMENT 21 Y12-4e13.q1k chrm 105 84 55496 55517 C 22 100.00 228 ambiguous 4 ALIGNMENT 0 Y12-4e13.p1k chrm 203 242 55547 55546 F 40 0.00 242 ambiguous 2 ALIGNMENT 20 Y12-4e13.p1k chrm 177 202 55522 55547 F 26 100.00 242 ambiguous 2 ALIGNMENT 75 Y12-4e13.p1k chrm 203 90 68604 68717 C 114 90.35 242 ambiguous 0 ALIGNMENT 23 Y12-4e13.q1k chrm 49 72 84193 84216 F 24 100.00 228 ambiguous 3 ALIGNMENT 20 Y12-4e13.q1k chrm 67 42 55522 55547 C 26 100.00 228 ambiguous 4 ALIGNMENT 0 Y12-4e13.q1k chrm 117 228 84248 84247 F 112 0.00 228 ambiguous 3 ALIGNMENT 75 Y12-4e13.q1k chrm 41 154 68604 68717 F 114 90.35 228 ambiguous 1 ALIGNMENT 929 Y12-4e14.p1k chr15 20 1069 251099 252159 F 1050 98.10 1367 accept 0 ALIGNMENT 966 Y12-4e14.q1k chr15 1129 32 255356 256460 C 1098 96.54 1364 accept 0 ALIGNMENT 1005 Y12-4e15.q1k chr12 1118 30 455732 456827 C 1089 97.98 1317 accept 0 ALIGNMENT 1054 Y12-4e15.p1k chr12 19 1204 462169 463368 F 1186 96.96 1410 accept 1 ALIGNMENT 1005 Y12-4e15.q1k chr12 1118 30 464869 465964 C 1089 97.98 1317 accept 1 ALIGNMENT 1054 Y12-4e15.p1k chr12 19 1204 453032 454231 F 1186 96.96 1410 accept 0 ALIGNMENT 0 Y12-4e16.q1k chrm 334 62 2890 2889 C 273 0.00 1373 reject_low 2 ALIGNMENT 261 Y12-4e16.q1k chrm 869 369 74976 75476 C 501 89.62 1373 accept 0 ALIGNMENT 0 Y12-4e16.q1k chrm 373 719 56702 56701 F 347 0.00 1373 reject_low 1 ALIGNMENT 470 Y12-4e16.p1k chrm 21 934 71908 72838 F 914 91.79 1404 accept 0 ALIGNMENT 31 Y12-4e16.q1k chrm 327 372 56656 56702 F 46 91.30 1373 reject_low 1 ALIGNMENT 0 Y12-4e16.q1k chrm 62 326 56656 56655 F 265 0.00 1373 reject_low 1 ALIGNMENT 29 Y12-4e16.q1k chrm 372 335 2853 2889 C 38 94.74 1373 reject_low 2 ALIGNMENT 0 Y12-4e16.q1k chrm 719 373 2854 2853 C 347 0.00 1373 reject_low 2 ALIGNMENT 0 Y12-4e16.q1k chrm 368 62 75477 75476 C 307 0.00 1373 accept 0 ALIGNMENT 1047 Y12-4e17.p1k chr13 1258 22 666882 668122 C 1237 95.23 1415 accept 0 ALIGNMENT 996 Y12-4e17.q1k chr13 37 1180 663419 664567 F 1144 96.68 1375 accept 0 ALIGNMENT 1000 Y12-4e19.p1k chr11 20 1237 537779 539012 F 1218 95.73 1359 accept_chi 0 ALIGNMENT 890 Y12-4e19.q1k chr07 1058 34 438264 439297 C 1025 96.59 1284 accept_chi 1 ALIGNMENT 1041 Y12-4e20.p1k chr15 24 1192 785328 786503 F 1169 97.52 1369 accept 0 ALIGNMENT 1033 Y12-4e21.p1k chr07 19 1304 1039854 1041146 F 1286 95.26 1330 accept 0 ALIGNMENT 737 Y12-4e21.q1k chr07 830 36 1043995 1044792 C 795 98.62 1096 accept 0 ALIGNMENT 888 Y12-4e22.p1k chr04 20 1073 1418504 1419584 F 1054 96.02 1270 accept 0 ALIGNMENT 992 Y12-4e22.q1k chr04 1192 36 1422129 1423298 C 1157 96.97 1350 accept 0 ALIGNMENT 32 Y12-4e23.q1k chr03 693 758 169752 169817 F 66 84.85 1336 reject_low 1 ALIGNMENT 0 Y12-4e23.q1k chr03 62 692 169752 169751 F 631 0.00 1336 reject_low 1 ALIGNMENT 991 Y12-4e23.q1k chr13 38 1245 502595 503793 F 1208 96.03 1336 accept 0 ALIGNMENT 0 Y12-4e23.q1k chr03 759 903 169817 169816 F 145 0.00 1336 reject_low 1 ALIGNMENT 1040 Y12-4e23.p1k chr13 1312 20 505183 506484 C 1293 94.97 1316 accept 0 ALIGNMENT 0 Y12-4e24.p1k chr08 585 868 555965 555964 F 284 0.00 1289 reject_low 1 ALIGNMENT 424 Y12-4e24.p1k chr01 34 609 228752 229330 F 576 92.01 1289 reject_low 2 ALIGNMENT 1005 Y12-4e24.q1k chr12 1305 36 1006911 1008185 C 1270 94.72 1358 accept 0 ALIGNMENT 1060 Y12-4e24.p1k chr12 29 1231 1003566 1004772 F 1203 97.09 1289 accept 0 ALIGNMENT 0 Y12-4e24.p1k chr13 868 575 162207 162206 C 294 0.00 1289 reject_low 3 ALIGNMENT 0 Y12-4e24.p1k chr01 610 868 229330 229329 F 259 0.00 1289 reject_low 2 ALIGNMENT 445 Y12-4e24.p1k chr08 29 584 555409 555965 F 556 93.88 1289 reject_low 1 ALIGNMENT 327 Y12-4e24.p1k chr13 574 29 162206 162752 C 546 87.18 1289 reject_low 3 ALIGNMENT 684 Y12-4f01.q1k chr04 785 29 185306 186064 C 757 97.62 1403 accept 0 ALIGNMENT 1003 Y12-4f01.p1k chr04 18 1155 182044 183190 F 1138 97.80 1367 accept 0 ALIGNMENT 999 Y12-4f02.p1k chr14 20 1201 42030 43220 F 1182 96.19 1376 accept 0 ALIGNMENT 964 Y12-4f02.q1k chr14 1094 35 47330 48394 C 1060 97.45 1382 accept 0 ALIGNMENT 0 Y12-4f03.q1k chr07 235 579 727738 727737 F 345 0.00 1204 reject_low 1 ALIGNMENT 174 Y12-4f03.q1k chr07 31 234 727533 727738 F 204 96.08 1204 reject_low 1 ALIGNMENT 997 Y12-4f03.p1k chr16 1180 33 800811 801972 C 1148 96.52 1397 accept 0 ALIGNMENT 718 Y12-4f03.q1k chr16 31 958 795561 796484 F 928 93.00 1204 accept 0 ALIGNMENT 1015 Y12-4f04.p1k chr13 30 1246 350496 351719 F 1217 95.81 1421 accept 0 ALIGNMENT 966 Y12-4f04.q1k chr13 1152 29 355068 356206 C 1124 96.71 1369 accept 0 ALIGNMENT 975 Y12-4f05.p1k chr16 1135 20 314350 315479 C 1116 97.13 1384 accept 0 ALIGNMENT 917 Y12-4f06.q1k chr14 35 1139 473056 474178 F 1105 95.66 1388 accept 0 ALIGNMENT 989 Y12-4f06.p1k chr14 1169 17 475472 476622 C 1153 96.44 1429 accept 0 ALIGNMENT 1041 Y12-4f09.q1k chr14 1198 27 331330 332510 C 1172 97.18 1375 accept 0 ALIGNMENT 954 Y12-4f09.p1k chr14 27 1124 328444 329555 F 1098 97.18 1407 accept 0 ALIGNMENT 0 Y12-4f09.q1k chr08 699 863 382311 382310 F 165 0.00 1375 reject_low 1 ALIGNMENT 297 Y12-4f09.q1k chr08 380 698 381993 382311 F 319 98.12 1375 reject_low 1 ALIGNMENT 0 Y12-4f09.q1k chr08 62 379 381993 381992 F 318 0.00 1375 reject_low 1 ALIGNMENT 1086 Y12-4f10.p1k chr02 1252 24 669135 670375 C 1229 97.07 1445 accept 0 ALIGNMENT 1005 Y12-4f10.q1k chr02 28 1161 666387 667535 F 1134 96.47 1376 accept 0 ALIGNMENT 926 Y12-4f11.q1k chr04 38 1200 422713 423884 F 1163 94.33 1401 accept 0 ALIGNMENT 956 Y12-4f11.p1k chr04 1104 20 428103 429193 C 1085 97.42 1391 accept 0 ALIGNMENT 1033 Y12-4f12.p1k chr12 1197 22 1025239 1026426 C 1176 97.11 1404 accept 0 ALIGNMENT 960 Y12-4f12.q1k chr12 39 1270 1020128 1021363 F 1232 93.67 1441 accept 0 ALIGNMENT 0 Y12-4f13.p1k chr12 62 177 451419 451418 F 116 0.00 1474 reject_low 1 ALIGNMENT 823 Y12-4f13.p1k chr12 178 1286 451419 452526 F 1109 93.33 1474 reject_low 1 ALIGNMENT 0 Y12-4f13.p1k chr12 62 525 489754 489753 F 464 0.00 1474 reject_low 2 ALIGNMENT 958 Y12-4f13.p1k chr12 36 1286 460413 461663 F 1251 94.00 1474 accept 0 ALIGNMENT 526 Y12-4f13.p1k chr12 526 1237 489754 490450 F 712 93.26 1474 reject_low 2 ALIGNMENT 850 Y12-4f14.p1k chr04 125 1131 1023474 1024472 F 1007 96.23 1396 accept 0 ALIGNMENT 55 Y12-4f14.p1k chr04 24 120 1023032 1023122 F 97 89.69 1396 accept 0 ALIGNMENT 907 Y12-4f14.q1k chr04 1129 34 1026084 1027193 C 1096 95.35 1365 accept 0 ALIGNMENT 0 Y12-4f14.p1k chr04 121 124 1023123 1023473 F 4 0.00 1396 accept 0 ALIGNMENT 964 Y12-4f15.p1k chr04 19 1209 791849 793056 F 1191 95.55 1388 accept 0 ALIGNMENT 949 Y12-4f16.p1k chr12 20 1235 51927 53157 F 1216 94.65 1407 accept 0 ALIGNMENT 1004 Y12-4f16.q1k chr12 1155 34 53508 54641 C 1122 97.24 1363 accept 0 ALIGNMENT 894 Y12-4f17.q1k chr05 36 1025 174366 175358 F 990 97.37 1318 accept 0 ALIGNMENT 980 Y12-4f17.p1k chr05 1175 25 177727 178891 C 1151 96.18 1365 accept 0 ALIGNMENT 0 Y12-4f18.q1k chr07 355 62 158896 158895 C 294 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-4f18.q1k chr07 854 380 158873 158872 C 475 0.00 1355 reject_low 1 ALIGNMENT 939 Y12-4f18.q1k chr10 1099 39 585302 586366 C 1061 97.64 1355 accept 0 ALIGNMENT 1007 Y12-4f18.p1k chr10 23 1154 583444 584587 F 1132 97.35 1359 accept 0 ALIGNMENT 22 Y12-4f18.q1k chr07 379 356 158872 158895 C 24 100.00 1355 reject_low 1 ALIGNMENT 1018 Y12-4f19.p1k chr08 1183 20 210699 211876 C 1164 97.59 1340 accept 0 ALIGNMENT 32 Y12-4f20.p1k chr12 1118 1193 375332 375407 F 76 84.21 1377 reject_bad_break 0 ALIGNMENT 0 Y12-4f20.p1k chr08 62 1108 252922 252921 F 1047 0.00 1377 reject_low 7 ALIGNMENT 0 Y12-4f20.p1k chr04 908 205 619958 619957 C 704 0.00 1377 reject_low 1 ALIGNMENT 0 Y12-4f20.p1k chr15 122 62 340374 340373 C 61 0.00 1377 reject_low 3 ALIGNMENT 0 Y12-4f20.p1k chr04 112 62 620049 620048 C 51 0.00 1377 reject_low 1 ALIGNMENT 0 Y12-4f20.p1k chr08 62 1046 252932 252931 F 985 0.00 1377 reject_low 9 ALIGNMENT 0 Y12-4f20.p1k chr07 1108 62 753344 753343 C 1047 0.00 1377 reject_low 6 ALIGNMENT 82 Y12-4f20.p1k chr15 204 123 340292 340373 C 82 100.00 1377 reject_low 3 ALIGNMENT 21 Y12-4f20.p1k chr08 1109 1139 252922 252952 F 31 90.32 1377 reject_low 7 ALIGNMENT 0 Y12-4f20.p1k chr15 908 205 340293 340292 C 704 0.00 1377 reject_low 3 ALIGNMENT 0 Y12-4f20.p1k chr10 199 908 233929 233928 F 710 0.00 1377 reject_low 4 ALIGNMENT 21 Y12-4f20.p1k chr07 1139 1109 753313 753343 C 31 90.32 1377 reject_low 6 ALIGNMENT 0 Y12-4f20.p1k chr10 62 119 233851 233850 F 58 0.00 1377 reject_low 4 ALIGNMENT 858 Y12-4f20.p1k chr12 109 1117 374340 375346 F 1009 96.73 1377|3,0 reject_bad_break 0 ALIGNMENT 74 Y12-4f20.p1k chr12 21 113 373905 373999 F 93 96.77 1377|0,2 reject_bad_break 0 ALIGNMENT 0 Y12-4f20.p1k chr12 112 111 373998 374342 F 0 0.00 1377 reject_bad_break 0 ALIGNMENT 73 Y12-4f20.p1k chr10 120 198 233851 233929 F 79 97.47 1377 reject_low 4 ALIGNMENT 0 Y12-4f20.p1k chr07 1046 62 753328 753327 C 985 0.00 1377 reject_low 8 ALIGNMENT 21 Y12-4f20.p1k chr08 1047 1075 252932 252960 F 29 93.10 1377 reject_low 9 ALIGNMENT 0 Y12-4f20.p1k chr05 124 62 492420 492419 C 63 0.00 1377 reject_low 5 ALIGNMENT 22 Y12-4f20.p1k chr07 1076 1047 753298 753327 C 30 93.33 1377 reject_low 8 ALIGNMENT 89 Y12-4f20.p1k chr04 204 113 619957 620048 C 92 98.91 1377 reject_low 1 ALIGNMENT 0 Y12-4f20.p1k chr11 205 908 490690 490689 F 704 0.00 1377 reject_low 2 ALIGNMENT 0 Y12-4f20.p1k chr05 908 198 492348 492347 C 711 0.00 1377 reject_low 5 ALIGNMENT 0 Y12-4f20.p1k chr12 1118 1117 375347 375331 F 0 0.00 1377 reject_bad_break 0 ALIGNMENT 931 Y12-4f20.q1k chr12 1179 35 377455 378603 C 1145 93.89 1319 reject_bad_break 0 ALIGNMENT 0 Y12-4f20.p1k chr11 62 113 490600 490599 F 52 0.00 1377 reject_low 2 ALIGNMENT 85 Y12-4f20.p1k chr11 114 204 490600 490690 F 91 97.80 1377 reject_low 2 ALIGNMENT 73 Y12-4f20.p1k chr05 197 125 492347 492419 C 73 100.00 1377 reject_low 5 ALIGNMENT 0 Y12-4f21.p1k chr12 98 62 490544 490543 C 37 0.00 1359 reject_low 3 ALIGNMENT 754 Y12-4f21.p1k chr12 888 99 489754 490543 C 790 98.61 1359 reject_low 3 ALIGNMENT 0 Y12-4f21.p1k chr12 1107 1101 460694 460717 C 7 0.00 1359 reject_bad_break 0 ALIGNMENT 0 Y12-4f21.p1k chr12 1107 1101 451557 451580 C 7 0.00 1359 reject_low 2 ALIGNMENT 894 Y12-4f21.q1k chr12 36 1017 466029 467025 F 982 97.25 1292 reject_low 1 ALIGNMENT 956 Y12-4f21.p1k chr12 1100 28 460718 461784 C 1073 97.20 1359 reject_bad_break 0 ALIGNMENT 36 Y12-4f21.p1k chr12 1332 1108 460480 460693 C 225 76.89 1359 reject_bad_break 0 ALIGNMENT 894 Y12-4f21.q1k chr12 36 1017 456892 457888 F 982 97.25 1292 reject_bad_break 0 ALIGNMENT 34 Y12-4f21.p1k chr12 1224 1108 451446 451556 C 117 81.20 1359 reject_low 2 ALIGNMENT 956 Y12-4f21.p1k chr12 1100 28 451581 452647 C 1073 97.20 1359 reject_low 2 ALIGNMENT 990 Y12-4f22.p1k chr15 1315 27 83589 84869 C 1289 93.56 1348 accept 0 ALIGNMENT 914 Y12-4f22.q1k chr15 31 1075 79953 81010 F 1045 96.46 1309 accept 0 ALIGNMENT 253 Y12-4f23.p1k chr07 839 1170 319426 319753 F 332 93.07 1317 reject_low 15 ALIGNMENT 0 Y12-4f23.p1k chr03 970 971 168593 168931 C 0 0.00 1317 reject_low 20 ALIGNMENT 0 Y12-4f23.p1k chr08 62 838 146324 146323 F 777 0.00 1317 reject_low 16 ALIGNMENT 270 Y12-4f23.p1k chr16 1170 839 856553 856881 C 332 94.58 1317 reject_low 9 ALIGNMENT 0 Y12-4f23.p1k chr14 838 62 726576 726575 C 777 0.00 1317 reject_low 18 ALIGNMENT 256 Y12-4f23.p1k chr08 839 1157 146324 146640 F 319 94.04 1317 reject_low 16 ALIGNMENT 263 Y12-4f23.p1k chr05 838 1157 434626 434943 F 320 94.69 1317 reject_low 12 ALIGNMENT 271 Y12-4f23.p1k chr01 1170 839 182626 182953 C 332 94.88 1317 reject_low 8 ALIGNMENT 276 Y12-4f23.p1k chr09 1188 836 210299 210647 C 353 93.77 1317 reject_low 2 ALIGNMENT 90 Y12-4f23.p1k chr05 838 739 135509 135608 C 100 98.00 1317|0,3 reject_bad_break 0 ALIGNMENT 0 Y12-4f23.p1k chr04 838 62 1023472 1023471 C 777 0.00 1317 reject_low 11 ALIGNMENT 0 Y12-4f23.p1k chr05 62 837 434626 434625 F 776 0.00 1317 reject_low 12 ALIGNMENT 266 Y12-4f23.p1k chr04 1187 835 668086 668435 C 353 92.63 1317 reject_low 5 ALIGNMENT 0 Y12-4f23.p1k chr03 830 62 169072 169071 C 769 0.00 1317 reject_low 20 ALIGNMENT 248 Y12-4f23.p1k chr12 1157 835 374024 374343 C 323 93.19 1317 reject_low 17 ALIGNMENT 0 Y12-4f23.p1k chr07 838 62 736328 736327 C 777 0.00 1317 reject_low 14 ALIGNMENT 0 Y12-4f23.p1k chr01 838 62 182954 182953 C 777 0.00 1317 reject_low 8 ALIGNMENT 0 Y12-4f23.p1k chr07 834 62 712554 712553 C 773 0.00 1317 reject_low 1 ALIGNMENT 262 Y12-4f23.p1k chr07 1157 839 736011 736327 C 319 94.67 1317 reject_low 14 ALIGNMENT 141 Y12-4f23.p1k chr03 1157 968 168408 168595 C 190 92.11 1317|0,3 reject_low 20 ALIGNMENT 29 Y12-4f23.p1k chr05 1281 1182 135417 135514 C 100 78.00 1317 reject_bad_break 0 ALIGNMENT 0 Y12-4f23.p1k chr14 838 62 547079 547078 C 777 0.00 1317 reject_low 10 ALIGNMENT 0 Y12-4f23.p1k chr09 838 62 205557 205556 C 777 0.00 1317 reject_low 3 ALIGNMENT 0 Y12-4f23.p1k chr16 838 62 856882 856881 C 777 0.00 1317 reject_low 9 ALIGNMENT 0 Y12-4f23.p1k chr07 62 838 319426 319425 F 777 0.00 1317 reject_low 15 ALIGNMENT 0 Y12-4f23.p1k chr09 835 62 210648 210647 C 774 0.00 1317 reject_low 2 ALIGNMENT 659 Y12-4f23.p1k chr05 744 23 135940 136662 C 722 98.75 1317|3,0 reject_bad_break 0 ALIGNMENT 0 Y12-4f23.p1k chr04 834 62 668436 668435 C 773 0.00 1317 reject_low 5 ALIGNMENT 0 Y12-4f23.p1k chr15 834 62 854617 854616 C 773 0.00 1317 reject_low 6 ALIGNMENT 0 Y12-4f23.p1k chr07 838 62 707539 707538 C 777 0.00 1317 reject_low 4 ALIGNMENT 127 Y12-4f23.p1k chr03 973 831 168929 169071 C 143 97.20 1317|3,0 reject_low 20 ALIGNMENT 0 Y12-4f23.p1k chr05 1181 839 135515 135508 C 343 0.00 1317 reject_bad_break 0 ALIGNMENT 268 Y12-4f23.p1k chr14 1170 839 546751 547078 C 332 94.58 1317 reject_low 10 ALIGNMENT 250 Y12-4f23.p1k chr14 1132 839 726283 726575 C 294 95.58 1317 reject_low 18 ALIGNMENT 262 Y12-4f23.p1k chr04 839 1157 945949 946265 F 319 94.67 1317 reject_low 13 ALIGNMENT 272 Y12-4f23.p1k chr07 1187 839 707194 707538 C 349 93.70 1317 reject_low 4 ALIGNMENT 273 Y12-4f23.p1k chr11 837 1170 202288 202617 F 334 94.91 1317 reject_low 7 ALIGNMENT 0 Y12-4f23.p1k chr11 62 836 202288 202287 F 775 0.00 1317 reject_low 7 ALIGNMENT 264 Y12-4f23.p1k chr15 1187 835 854268 854616 C 353 92.63 1317 reject_low 6 ALIGNMENT 0 Y12-4f23.p1k chr05 741 742 135606 135942 C 0 0.00 1317 reject_bad_break 0 ALIGNMENT 942 Y12-4f23.q1k chr05 28 1093 131388 132458 F 1066 97.28 1299 reject_bad_break 0 ALIGNMENT 274 Y12-4f23.p1k chr09 1188 839 205211 205556 C 350 93.71 1317 reject_low 3 ALIGNMENT 0 Y12-4f23.p1k chr12 834 62 374344 374343 C 773 0.00 1317 reject_low 17 ALIGNMENT 277 Y12-4f23.p1k chr07 1188 835 712204 712553 C 354 93.79 1317 reject_low 1 ALIGNMENT 229 Y12-4f23.p1k chr05 839 1096 492434 492690 F 258 96.51 1317 reject_low 19 ALIGNMENT 250 Y12-4f23.p1k chr04 1184 839 1023129 1023471 C 346 91.62 1317 reject_low 11 ALIGNMENT 0 Y12-4f23.p1k chr04 62 838 945949 945948 F 777 0.00 1317 reject_low 13 ALIGNMENT 0 Y12-4f23.p1k chr05 62 838 492434 492433 F 777 0.00 1317 reject_low 19 ALIGNMENT 0 Y12-4f24.q1k chr07 610 62 1071338 1071337 C 549 0.00 1326 reject_low 2 ALIGNMENT 576 Y12-4f24.q1k chr02 1148 430 800994 801721 C 719 94.02 1326 accept 0 ALIGNMENT 0 Y12-4f24.q1k chr02 429 62 801722 801721 C 368 0.00 1326 accept 0 ALIGNMENT 111 Y12-4f24.q1k chr16 1117 451 931885 932561 C 667 73.16 1326 reject_low 1 ALIGNMENT 120 Y12-4f24.q1k chr07 1068 611 1070880 1071337 C 458 75.76 1326 reject_low 2 ALIGNMENT 1019 Y12-4f24.p1k chr02 20 1256 797004 798237 F 1237 94.91 1312 accept 0 ALIGNMENT 0 Y12-4f24.q1k chr16 450 62 932562 932561 C 389 0.00 1326 reject_low 1 ALIGNMENT 951 Y12-4g01.p1k chr12 1215 12 607826 609028 C 1204 94.77 1389 accept 0 ALIGNMENT 1009 Y12-4g01.q1k chr12 38 1240 602883 604095 F 1203 95.59 1375 accept 0 ALIGNMENT 703 Y12-4g02.p1k chr12 61 1062 555438 556445 F 1002 91.62 1434 accept 0 ALIGNMENT 993 Y12-4g02.q1k chr12 1206 34 557540 558719 C 1173 94.88 1436 accept 0 ALIGNMENT 0 Y12-4g03.q1k chr06 939 623 31623 31622 C 317 0.00 1390 reject_low 3 ALIGNMENT 1003 Y12-4g03.p1k chr12 1117 19 453073 454185 C 1099 97.73 1396 reject_low 1 ALIGNMENT 944 Y12-4g03.q1k chr12 41 1210 458834 460015 F 1170 95.21 1390 accept 0 ALIGNMENT 94 Y12-4g03.q1k chr06 622 515 31622 31729 C 108 98.15 1390 reject_low 3 ALIGNMENT 0 Y12-4g03.q1k chr12 62 881 485696 485695 F 820 0.00 1390 reject_low 7 ALIGNMENT 102 Y12-4g03.q1k chr12 882 1014 472464 472596 F 133 92.48 1390 reject_low 5 ALIGNMENT 102 Y12-4g03.q1k chr12 882 1014 482044 482176 F 133 92.48 1390 reject_low 6 ALIGNMENT 102 Y12-4g03.q1k chr12 882 1014 485696 485828 F 133 92.48 1390 reject_low 7 ALIGNMENT 0 Y12-4g03.q1k chr12 62 881 472464 472463 F 820 0.00 1390 reject_low 5 ALIGNMENT 894 Y12-4g03.q1k chr12 41 1014 467971 468944 F 974 98.56 1390 reject_low 2 ALIGNMENT 0 Y12-4g03.q1k chr12 62 881 489348 489347 F 820 0.00 1390 reject_low 4 ALIGNMENT 109 Y12-4g03.q1k chr12 882 1015 489348 489481 F 134 94.03 1390 reject_low 4 ALIGNMENT 0 Y12-4g03.q1k chr06 514 62 31730 31729 C 453 0.00 1390 reject_low 3 ALIGNMENT 1005 Y12-4g03.p1k chr12 1140 19 462183 463322 C 1122 97.24 1396 accept 0 ALIGNMENT 0 Y12-4g03.q1k chr12 62 881 482044 482043 F 820 0.00 1390 reject_low 6 ALIGNMENT 52 Y12-4g04.q1k chr02 805 1014 92684 92894 F 210 74.29 1334 reject_low 1 ALIGNMENT 0 Y12-4g04.q1k chr02 62 804 92684 92683 F 743 0.00 1334 reject_low 1 ALIGNMENT 1064 Y12-4g04.p1k chr08 19 1249 76928 78168 F 1231 96.51 1415 accept 0 ALIGNMENT 968 Y12-4g04.q1k chr08 1105 35 81052 82137 C 1071 97.57 1334 accept 0 ALIGNMENT 22 Y12-4g05.q1k chr12 954 925 585049 585078 C 30 93.33 1428 reject_low 2 ALIGNMENT 24 Y12-4g05.q1k chr08 953 925 365398 365426 C 29 96.55 1428 reject_low 1 ALIGNMENT 0 Y12-4g05.q1k chr08 924 62 365427 365426 C 863 0.00 1428 reject_low 1 ALIGNMENT 929 Y12-4g05.q1k chr04 37 1207 583724 584894 F 1171 95.05 1428 accept 0 ALIGNMENT 977 Y12-4g05.p1k chr04 1212 18 586853 588068 C 1195 95.98 1425 accept 0 ALIGNMENT 0 Y12-4g05.q1k chr12 924 62 585079 585078 C 863 0.00 1428 reject_low 2 ALIGNMENT 952 Y12-4g06.q1k chr10 35 1170 249971 251123 F 1136 95.42 1393 accept 0 ALIGNMENT 971 Y12-4g06.p1k chr10 1154 22 253493 254633 C 1133 96.20 1413 accept 0 ALIGNMENT 0 Y12-4g09.q1k chr05 125 62 443730 443729 C 64 0.00 1376 reject_low 25,26 ALIGNMENT 71 Y12-4g09.q1k chr07 152 278 876157 876284 F 127 88.19 1376 reject_low 16 ALIGNMENT 0 Y12-4g09.q1k chr04 62 462 410373 410372 F 401 0.00 1376 reject_low 2 ALIGNMENT 0 Y12-4g09.q1k chr13 871 547 768361 768360 C 325 0.00 1376 reject_low 3 ALIGNMENT 78 Y12-4g09.q1k chr05 278 152 448980 449106 C 127 89.76 1376 reject_low 11 ALIGNMENT 0 Y12-4g09.q1k chr04 553 871 410464 410463 F 319 0.00 1376 reject_low 2 ALIGNMENT 0 Y12-4g09.q1k chr13 871 280 357004 357003 C 592 0.00 1376 reject_low 15 ALIGNMENT 72 Y12-4g09.q1k chr13 538 462 321146 321222 C 77 98.70 1376 reject_low 7 ALIGNMENT 0 Y12-4g09.q1k chr11 539 871 517702 517701 F 333 0.00 1376 reject_low 8 ALIGNMENT 0 Y12-4g09.q1k chr08 465 62 146308 146307 C 404 0.00 1376 reject_low 4 ALIGNMENT 0 Y12-4g09.q1k chr11 62 464 517629 517628 F 403 0.00 1376 reject_low 8 ALIGNMENT 0 Y12-4g09.q1k chr10 871 273 354457 354456 C 599 0.00 1376 reject_low 17 ALIGNMENT 71 Y12-4g09.q1k chr11 465 538 517629 517702 F 74 100.00 1376 reject_low 8 ALIGNMENT 0 Y12-4g09.q1k chr12 259 871 656725 656724 F 613 0.00 1376 reject_low 21 ALIGNMENT 67 Y12-4g09.q1k chr08 152 269 133876 133993 F 118 88.14 1376 reject_low 18 ALIGNMENT 51 Y12-4g09.q1k chr06 156 268 138119 138229 F 113 84.96 1376 reject_low 22 ALIGNMENT 0 Y12-4g09.q1k chr12 871 540 656936 656935 C 332 0.00 1376 reject_low 6 ALIGNMENT 0 Y12-4g09.q1k chr05 871 270 431496 431495 C 602 0.00 1376 reject_low 20 ALIGNMENT 73 Y12-4g09.q1k chr10 272 158 354456 354570 C 115 90.43 1376 reject_low 17 ALIGNMENT 0 Y12-4g09.q1k chr16 871 279 850626 850625 C 593 0.00 1376 reject_low 12 ALIGNMENT 76 Y12-4g09.q1k chr08 279 152 116415 116542 C 128 89.06 1376 reject_low 13 ALIGNMENT 0 Y12-4g09.q1k chr06 151 62 161925 161924 C 90 0.00 1376 reject_low 19 ALIGNMENT 0 Y12-4g09.q1k chr12 461 62 657013 657012 C 400 0.00 1376 reject_low 6 ALIGNMENT 0 Y12-4g09.q1k chr06 871 539 204913 204912 C 333 0.00 1376 reject_low 9 ALIGNMENT 0 Y12-4g09.q1k chr05 155 62 431608 431607 C 94 0.00 1376 reject_low 20 ALIGNMENT 74 Y12-4g09.q1k chr10 547 466 197223 197304 C 82 97.56 1376 reject_low 5 ALIGNMENT 0 Y12-4g09.q1k chr13 461 62 321223 321222 C 400 0.00 1376 reject_low 7 ALIGNMENT 73 Y12-4g09.q1k chr05 279 152 443392 443519 C 128 88.28 1376|0,1 reject_low 25 ALIGNMENT 0 Y12-4g09.q1k chr05 152 153 443519 443702 C 0 0.00 1376 reject_low 25 ALIGNMENT 66 Y12-4g09.q1k chr06 271 152 161805 161924 C 120 87.50 1376 reject_low 19 ALIGNMENT 936 Y12-4g09.p1k chr07 1133 19 776909 778022 C 1115 96.23 1425 accept 0 ALIGNMENT 0 Y12-4g09.q1k chr05 871 269 435953 435952 C 603 0.00 1376 reject_low 26 ALIGNMENT 0 Y12-4g09.q1k chr06 62 155 143746 143745 F 94 0.00 1376 reject_low 23 ALIGNMENT 80 Y12-4g09.q1k chr13 546 465 768360 768441 C 82 100.00 1376 reject_low 3 ALIGNMENT 57 Y12-4g09.q1k chr12 156 258 656623 656725 F 103 87.38 1376 reject_low 21 ALIGNMENT 81 Y12-4g09.q1k chr04 463 552 410373 410464 F 90 97.78 1376 reject_low 2 ALIGNMENT 0 Y12-4g09.q1k chr12 62 155 656623 656622 F 94 0.00 1376 reject_low 21 ALIGNMENT 62 Y12-4g09.q1k chr05 269 156 431495 431607 C 114 87.72 1376 reject_low 20 ALIGNMENT 76 Y12-4g09.q1k chr12 539 462 656935 657012 C 78 100.00 1376 reject_low 6 ALIGNMENT 0 Y12-4g09.q1k chr13 464 62 768442 768441 C 403 0.00 1376 reject_low 3 ALIGNMENT 0 Y12-4g09.q1k chr08 871 548 146227 146226 C 324 0.00 1376 reject_low 4 ALIGNMENT 0 Y12-4g09.q1k chr10 157 62 354571 354570 C 96 0.00 1376 reject_low 17 ALIGNMENT 0 Y12-4g09.q1k chr06 465 62 204985 204984 C 404 0.00 1376 reject_low 9 ALIGNMENT 74 Y12-4g09.q1k chr08 547 466 146226 146307 C 82 97.56 1376 reject_low 4 ALIGNMENT 0 Y12-4g09.q1k chr08 151 62 116543 116542 C 90 0.00 1376 reject_low 13 ALIGNMENT 0 Y12-4g09.q1k chr08 270 871 133993 133992 F 602 0.00 1376 reject_low 18 ALIGNMENT 904 Y12-4g09.q1k chr07 35 1121 773924 775024 F 1087 95.86 1376 accept 0 ALIGNMENT 0 Y12-4g09.q1k chr06 871 272 161806 161805 C 600 0.00 1376 reject_low 19 ALIGNMENT 0 Y12-4g09.q1k chr13 151 62 357131 357130 C 90 0.00 1376 reject_low 15 ALIGNMENT 0 Y12-4g09.q1k chr05 155 154 436063 443701 C 2 0.00 1376 reject_low 26 ALIGNMENT 0 Y12-4g09.q1k chr16 539 871 856970 856969 F 333 0.00 1376 reject_low 10 ALIGNMENT 0 Y12-4g09.q1k chr11 557 871 219633 219632 F 315 0.00 1376 reject_low 1 ALIGNMENT 21 Y12-4g09.q1k chr05 153 126 443702 443729 C 28 92.86 1376|1,0 reject_low 25,26 ALIGNMENT 0 Y12-4g09.q1k chr08 871 280 116416 116415 C 592 0.00 1376 reject_low 13 ALIGNMENT 78 Y12-4g09.q1k chr16 278 152 850625 850751 C 127 89.76 1376 reject_low 12 ALIGNMENT 0 Y12-4g09.q1k chr06 279 871 143937 143936 F 593 0.00 1376 reject_low 24 ALIGNMENT 0 Y12-4g09.q1k chr16 62 465 856898 856897 F 404 0.00 1376 reject_low 10 ALIGNMENT 0 Y12-4g09.q1k chr05 871 279 448981 448980 C 593 0.00 1376 reject_low 11 ALIGNMENT 70 Y12-4g09.q1k chr16 466 538 856898 856970 F 73 100.00 1376 reject_low 10 ALIGNMENT 0 Y12-4g09.q1k chr05 871 280 443393 443392 C 592 0.00 1376 reject_low 25 ALIGNMENT 0 Y12-4g09.q1k chr08 62 151 133876 133875 F 90 0.00 1376 reject_low 18 ALIGNMENT 0 Y12-4g09.q1k chr06 269 871 143856 143855 F 603 0.00 1376 reject_low 23 ALIGNMENT 70 Y12-4g09.q1k chr06 538 466 204912 204984 C 73 100.00 1376 reject_low 9 ALIGNMENT 0 Y12-4g09.q1k chr06 62 208 143868 143867 F 147 0.00 1376 reject_low 24 ALIGNMENT 76 Y12-4g09.q1k chr11 462 556 219537 219633 F 95 94.74 1376 reject_low 1 ALIGNMENT 0 Y12-4g09.q1k chr07 279 871 876284 876283 F 593 0.00 1376 reject_low 16 ALIGNMENT 0 Y12-4g09.q1k chr10 871 548 197224 197223 C 324 0.00 1376 reject_low 5 ALIGNMENT 75 Y12-4g09.q1k chr07 152 278 541563 541689 F 127 88.98 1376 reject_low 14 ALIGNMENT 0 Y12-4g09.q1k chr06 62 155 138119 138118 F 94 0.00 1376 reject_low 22 ALIGNMENT 0 Y12-4g09.q1k chr13 871 539 321147 321146 C 333 0.00 1376 reject_low 7 ALIGNMENT 0 Y12-4g09.q1k chr07 62 151 876157 876156 F 90 0.00 1376 reject_low 16 ALIGNMENT 0 Y12-4g09.q1k chr07 279 871 541689 541688 F 593 0.00 1376 reject_low 14 ALIGNMENT 0 Y12-4g09.q1k chr10 465 62 197305 197304 C 404 0.00 1376 reject_low 5 ALIGNMENT 0 Y12-4g09.q1k chr11 62 461 219537 219536 F 400 0.00 1376 reject_low 1 ALIGNMENT 0 Y12-4g09.q1k chr06 269 871 138229 138228 F 603 0.00 1376 reject_low 22 ALIGNMENT 45 Y12-4g09.q1k chr05 268 156 435952 436062 C 113 83.19 1376 reject_low 26 ALIGNMENT 0 Y12-4g09.q1k chr07 62 151 541563 541562 F 90 0.00 1376 reject_low 14 ALIGNMENT 51 Y12-4g09.q1k chr06 156 268 143746 143856 F 113 84.96 1376 reject_low 23 ALIGNMENT 73 Y12-4g09.q1k chr13 279 152 357003 357130 C 128 88.28 1376 reject_low 15 ALIGNMENT 0 Y12-4g09.q1k chr16 151 62 850752 850751 C 90 0.00 1376 reject_low 12 ALIGNMENT 37 Y12-4g09.q1k chr06 209 278 143868 143937 F 70 88.57 1376 reject_low 24 ALIGNMENT 0 Y12-4g09.q1k chr05 151 62 449107 449106 C 90 0.00 1376 reject_low 11 ALIGNMENT 903 Y12-4g10.p1k chr16 27 1205 105713 106876 F 1179 94.06 1463 accept 0 ALIGNMENT 960 Y12-4g10.q1k chr16 1134 33 109925 111034 C 1102 96.73 1424 accept 0 ALIGNMENT 0 Y12-4g12.p1k chr05 62 389 469451 469450 F 328 0.00 1468 reject_low 7 ALIGNMENT 78 Y12-4g12.p1k chr07 471 390 73821 73902 C 82 98.78 1468 reject_low 8 ALIGNMENT 0 Y12-4g12.p1k chr16 875 240 436104 436103 C 636 0.00 1468 reject_low 2 ALIGNMENT 0 Y12-4g12.p1k chr10 62 390 378276 378275 F 329 0.00 1468 reject_low 13 ALIGNMENT 0 Y12-4g12.p1k chr08 378 62 85381 85380 C 317 0.00 1468 reject_low 5 ALIGNMENT 0 Y12-4g12.p1k chr13 62 146 378915 378914 F 85 0.00 1468 reject_low 1 ALIGNMENT 77 Y12-4g12.p1k chr10 391 471 378276 378356 F 81 98.77 1468 reject_low 13 ALIGNMENT 81 Y12-4g12.p1k chr13 471 390 586628 586709 C 82 100.00 1468 reject_low 6 ALIGNMENT 0 Y12-4g12.p1k chr11 389 62 307864 307863 C 328 0.00 1468 reject_low 9 ALIGNMENT 0 Y12-4g12.p1k chr07 383 206 412378 412542 C 178 0.00 1468 reject_low 15 ALIGNMENT 0 Y12-4g12.p1k chr11 62 390 379323 379322 F 329 0.00 1468 reject_low 14 ALIGNMENT 0 Y12-4g12.p1k chr12 875 471 687856 687855 C 405 0.00 1468 reject_low 10 ALIGNMENT 0 Y12-4g12.p1k chr07 389 62 73903 73902 C 328 0.00 1468 reject_low 8 ALIGNMENT 77 Y12-4g12.p1k chr05 391 471 438696 438776 F 81 98.77 1468 reject_low 12 ALIGNMENT 0 Y12-4g12.p1k chr13 214 215 372694 378624 C 0 0.00 1468 accept_trans 0 ALIGNMENT 74 Y12-4g12.p1k chr11 391 464 379323 379396 F 74 100.00 1468 reject_low 14 ALIGNMENT 48 Y12-4g12.p1k chr13 147 236 378915 379004 F 90 86.67 1468 reject_low 1 ALIGNMENT 862 Y12-4g12.p1k chr13 1245 210 371666 372698 C 1036 95.56 1468|0,5 accept_trans 0 ALIGNMENT 78 Y12-4g12.p1k chr11 471 390 307782 307863 C 82 98.78 1468 reject_low 9 ALIGNMENT 0 Y12-4g12.p1k chr11 875 472 307783 307782 C 404 0.00 1468 reject_low 9 ALIGNMENT 0 Y12-4g12.p1k chr07 143 62 412605 412604 C 82 0.00 1468 reject_low 15 ALIGNMENT 0 Y12-4g12.p1k chr07 875 472 73822 73821 C 404 0.00 1468 reject_low 8 ALIGNMENT 0 Y12-4g12.p1k chr05 472 875 438776 438775 F 404 0.00 1468 reject_low 12 ALIGNMENT 79 Y12-4g12.p1k chr13 469 391 420582 420660 C 79 100.00 1468 reject_low 11 ALIGNMENT 0 Y12-4g12.p1k chr16 143 62 436198 436197 C 82 0.00 1468 reject_low 2 ALIGNMENT 81 Y12-4g12.p1k chr07 372 470 823469 823566 F 99 94.95 1468 reject_low 3 ALIGNMENT 0 Y12-4g12.p1k chr13 875 472 586629 586628 C 404 0.00 1468 reject_low 6 ALIGNMENT 0 Y12-4g12.p1k chr08 875 472 85288 85287 C 404 0.00 1468 reject_low 5 ALIGNMENT 0 Y12-4g12.p1k chr13 237 875 379004 379003 F 639 0.00 1468 reject_low 1 ALIGNMENT 80 Y12-4g12.p1k chr05 390 470 469451 469531 F 81 100.00 1468 reject_low 7 ALIGNMENT 0 Y12-4g12.p1k chr10 472 875 378356 378355 F 404 0.00 1468 reject_low 13 ALIGNMENT 78 Y12-4g12.p1k chr15 469 377 663807 663899 C 93 94.62 1468 reject_low 4 ALIGNMENT 79 Y12-4g12.p1k chr12 470 391 687855 687934 C 80 100.00 1468 reject_low 10 ALIGNMENT 181 Y12-4g12.p1k chr13 218 14 378621 378826 C 205 98.54 1468|4,0 accept_trans 0 ALIGNMENT 0 Y12-4g12.p1k chr07 875 465 412298 412297 C 411 0.00 1468 reject_low 15 ALIGNMENT 0 Y12-4g12.p1k chr05 62 390 438696 438695 F 329 0.00 1468 reject_low 12 ALIGNMENT 0 Y12-4g12.p1k chr15 875 470 663808 663807 C 406 0.00 1468 reject_low 4 ALIGNMENT 0 Y12-4g12.p1k chr13 390 62 420661 420660 C 329 0.00 1468 reject_low 11 ALIGNMENT 0 Y12-4g12.p1k chr05 471 875 469531 469530 F 405 0.00 1468 reject_low 7 ALIGNMENT 0 Y12-4g12.p1k chr15 376 62 663900 663899 C 315 0.00 1468 reject_low 4 ALIGNMENT 38 Y12-4g12.p1k chr16 239 144 436103 436197 C 96 83.33 1468 reject_low 2 ALIGNMENT 78 Y12-4g12.p1k chr07 464 384 412297 412377 C 81 98.77 1468 reject_low 15 ALIGNMENT 0 Y12-4g12.p1k chr07 62 371 823469 823468 F 310 0.00 1468 reject_low 3 ALIGNMENT 940 Y12-4g12.q1k chr13 37 1189 369972 371122 F 1153 95.06 1423 accept_trans 0 ALIGNMENT 0 Y12-4g12.p1k chr07 471 875 823566 823565 F 405 0.00 1468 reject_low 3 ALIGNMENT 0 Y12-4g12.p1k chr12 390 62 687935 687934 C 329 0.00 1468 reject_low 10 ALIGNMENT 0 Y12-4g12.p1k chr11 465 875 379396 379395 F 411 0.00 1468 reject_low 14 ALIGNMENT 0 Y12-4g12.p1k chr13 389 62 586710 586709 C 328 0.00 1468 reject_low 6 ALIGNMENT 0 Y12-4g12.p1k chr13 875 470 420583 420582 C 406 0.00 1468 reject_low 11 ALIGNMENT 80 Y12-4g12.p1k chr08 471 379 85287 85380 C 93 95.70 1468 reject_low 5 ALIGNMENT 39 Y12-4g12.p1k chr07 205 144 412543 412604 C 62 90.32 1468 reject_low 15 ALIGNMENT 943 Y12-4g14.q1k chr02 35 1173 589164 590319 F 1139 94.64 1370 accept 0 ALIGNMENT 991 Y12-4g14.p1k chr02 1162 19 592339 593485 C 1144 96.94 1404 accept 0 ALIGNMENT 1011 Y12-4g15.q1k chr01 1200 38 130046 131216 C 1163 96.39 1356 accept 0 ALIGNMENT 1004 Y12-4g15.p1k chr01 23 1305 126401 127684 F 1283 94.08 1449 accept 0 ALIGNMENT 963 Y12-4g16.p1k chr08 1138 21 445772 446905 C 1118 96.51 1363 accept 0 ALIGNMENT 209 Y12-4g17.q1k chr11 628 301 329220 329532 C 328 93.60 1234 accept 0 ALIGNMENT 761 Y12-4g17.p1k chr11 31 1183 325312 326462 F 1153 90.63 1369 accept 0 ALIGNMENT 1009 Y12-4g18.q1k chr07 1201 32 772613 773796 C 1170 97.18 1367 accept 0 ALIGNMENT 955 Y12-4g18.p1k chr07 16 1151 768786 769937 F 1136 96.39 1371 accept 0 ALIGNMENT 971 Y12-4g19.q1k chr07 1142 36 278525 279644 C 1107 97.29 1331 accept 0 ALIGNMENT 995 Y12-4g19.p1k chr07 21 1230 275250 276461 F 1210 95.62 1361 accept 0 ALIGNMENT 964 Y12-4g20.p1k chr07 23 1198 1014146 1015341 F 1176 95.49 1339 accept 0 ALIGNMENT 951 Y12-4g20.q1k chr07 1182 35 1017411 1018576 C 1148 94.86 1335 accept 0 ALIGNMENT 981 Y12-4g21.q1k chr14 1211 41 173824 175007 C 1171 95.99 1297 accept 0 ALIGNMENT 1037 Y12-4g21.p1k chr14 27 1230 169994 171206 F 1204 96.35 1337 accept 0 ALIGNMENT 0 Y12-4g23.q1k chr04 640 709 140470 140539 F 70 0.00 1299 reject_low 2 ALIGNMENT 1032 Y12-4g23.p1k chr05 1236 20 19934 21159 C 1217 95.73 1304 accept 0 ALIGNMENT 981 Y12-4g23.q1k chr05 48 1175 16608 17744 F 1128 96.01 1299 accept 0 ALIGNMENT 31 Y12-4g23.q1k chr04 431 639 140261 140469 F 209 73.21 1299 reject_low 2 ALIGNMENT 0 Y12-4g23.q1k chr04 758 830 140587 140586 F 73 0.00 1299 reject_low 2 ALIGNMENT 23 Y12-4g23.q1k chr04 710 757 140540 140587 F 48 85.42 1299 reject_low 2 ALIGNMENT 0 Y12-4g23.q1k chr04 62 430 140261 140260 F 369 0.00 1299 reject_low 2 ALIGNMENT 992 Y12-4g23.p1k chr14 20 1222 774730 775940 F 1203 94.93 1304 reject_low 1 ALIGNMENT 1027 Y12-4g24.q1k chr05 28 1157 540764 541903 F 1130 98.23 1324 accept 0 ALIGNMENT 1003 Y12-4g24.p1k chr05 1214 22 545373 546575 C 1193 95.39 1285 accept 0 ALIGNMENT 364 Y12-4g24.p1k chr04 995 225 653598 654368 C 771 82.36 1285 reject_low 1 ALIGNMENT 0 Y12-4g24.p1k chr04 224 62 654369 654368 C 163 0.00 1285 reject_low 1 ALIGNMENT 557 Y12-4h01.q1k chr10 734 34 83668 84372 C 701 94.01 1026 accept 0 ALIGNMENT 1010 Y12-4h01.p1k chr10 15 1220 78668 79880 F 1206 95.52 1382 accept 0 ALIGNMENT 936 Y12-4h02.p1k chr12 19 1163 463078 464214 F 1145 95.11 1398 reject_low 1 ALIGNMENT 944 Y12-4h02.p1k chr12 19 1266 453941 455184 F 1248 93.27 1398 accept 0 ALIGNMENT 950 Y12-4h02.q1k chr12 1139 36 456709 457835 C 1104 95.83 1389 accept 0 ALIGNMENT 950 Y12-4h02.q1k chr12 1139 36 465846 466972 C 1104 95.83 1389 reject_low 1 ALIGNMENT 1004 Y12-4h03.q1k chr03 33 1171 135683 136836 F 1139 96.58 1373 accept 0 ALIGNMENT 956 Y12-4h03.p1k chr03 1125 21 138243 139357 C 1105 96.11 1365 accept 0 ALIGNMENT 1012 Y12-4h04.q1k chr10 35 1172 423088 424239 F 1138 97.54 1387 accept 0 ALIGNMENT 1017 Y12-4h04.p1k chr10 1094 22 426585 427657 C 1073 98.88 1423 accept 0 ALIGNMENT 938 Y12-4h06.p1k chr05 18 1133 35863 36984 F 1116 96.33 1392 accept 0 ALIGNMENT 939 Y12-4h06.q1k chr05 1137 25 38894 40026 C 1113 95.69 1377 accept 0 ALIGNMENT 882 Y12-4h07.q1k chr02 1085 25 680481 681529 C 1061 96.14 1411 accept 0 ALIGNMENT 1014 Y12-4h07.p1k chr02 21 1206 674953 676155 F 1186 96.54 1416 accept 0 ALIGNMENT 1008 Y12-4h08.p1k chr12 1240 23 568717 569959 C 1218 95.73 1444 accept_chi 0 ALIGNMENT 983 Y12-4h08.q1k chr04 1164 35 1323932 1325072 C 1130 96.64 1401 accept_chi 1 ALIGNMENT 1024 Y12-4h09.p1k chr07 1174 20 1028813 1029972 C 1155 97.49 1414 accept 0 ALIGNMENT 1029 Y12-4h09.q1k chr07 37 1225 1025132 1026340 F 1189 95.96 1458 accept 0 ALIGNMENT 926 Y12-4h10.q1k chr01 1165 36 123992 125133 C 1130 94.69 1430 accept 0 ALIGNMENT 1021 Y12-4h10.p1k chr01 21 1196 120097 121286 F 1176 96.60 1433 accept 0 ALIGNMENT 919 Y12-4h11.p1k chr10 1197 24 587463 588632 C 1174 94.12 1486 accept 0 ALIGNMENT 844 Y12-4h11.q1k chr10 40 1043 582473 583480 F 1004 96.02 1337 accept 0 ALIGNMENT 908 Y12-4h12.q1k chr14 1104 38 603790 604867 C 1067 95.88 1351 accept 0 ALIGNMENT 971 Y12-4h12.p1k chr14 1241 25 570211 571424 C 1217 94.33 1431 reject_low 1 ALIGNMENT 0 Y12-4h12.q1k chr14 62 646 720378 720377 F 585 0.00 1351 reject_low 3 ALIGNMENT 0 Y12-4h12.q1k chr08 62 639 420568 420567 F 578 0.00 1351 reject_low 2 ALIGNMENT 0 Y12-4h12.q1k chr08 678 880 420605 420604 F 203 0.00 1351 reject_low 2 ALIGNMENT 20 Y12-4h12.q1k chr08 640 677 420568 420605 F 38 94.74 1351 reject_low 2 ALIGNMENT 0 Y12-4h12.q1k chr14 678 880 720408 720407 F 203 0.00 1351 reject_low 3 ALIGNMENT 20 Y12-4h12.q1k chr14 647 677 720378 720408 F 31 96.77 1351 reject_low 3 ALIGNMENT 1007 Y12-4h12.p1k chr14 25 1241 600829 602042 F 1217 95.40 1431 accept 0 ALIGNMENT 808 Y12-4h13.p1k chr14 1008 16 520533 521532 C 993 95.17 1390 ambiguous_trans 21 ALIGNMENT 805 Y12-4h13.p1k chr13 16 1008 376249 377248 F 993 95.07 1390 ambiguous_trans 22 ALIGNMENT 811 Y12-4h13.p1k chr12 1008 16 594516 595515 C 993 95.27 1390 ambiguous_trans 14 ALIGNMENT 985 Y12-4h13.p1k chr02 1187 16 222224 223408 C 1172 96.33 1390 ambiguous_trans 1 ALIGNMENT 976 Y12-4h13.p1k chr13 16 1187 360551 361735 F 1172 96.08 1390 ambiguous_trans 2 ALIGNMENT 806 Y12-4h13.p1k chr10 1168 16 479170 480333 C 1153 91.50 1390 ambiguous_trans 5 ALIGNMENT 817 Y12-4h13.p1k chr13 1008 16 197704 198703 C 993 95.47 1390 ambiguous_trans 9 ALIGNMENT 811 Y12-4h13.p1k chr10 1008 16 473750 474749 C 993 95.27 1390 ambiguous_trans 12 ALIGNMENT 811 Y12-4h13.p1k chr07 1008 16 537137 538136 C 993 95.27 1390 ambiguous_trans 11 ALIGNMENT 806 Y12-4h13.p1k chr16 16 1168 808190 809353 F 1153 91.50 1390 ambiguous_trans 6 ALIGNMENT 939 Y12-4h13.p1k chr04 1182 16 804087 805265 C 1167 95.12 1390 ambiguous_trans_ua 4 ALIGNMENT 805 Y12-4h13.p1k chr16 1008 16 845781 846780 C 993 95.07 1390 ambiguous_trans 23 ALIGNMENT 808 Y12-4h13.p1k chr04 16 1008 649046 650045 F 993 95.17 1390 ambiguous_trans 16 ALIGNMENT 958 Y12-4h13.p1k chr14 16 1187 100157 101341 F 1172 95.56 1390 ambiguous_trans 3 ALIGNMENT 820 Y12-4h13.p1k chr15 1008 16 119075 120074 C 993 95.57 1390 ambiguous_trans 8 ALIGNMENT 802 Y12-4h13.p1k chr04 1008 16 1097135 1098134 C 993 94.96 1390 ambiguous_trans 24 ALIGNMENT 932 Y12-4h13.q1k chr14 32 1123 94019 95120 F 1092 95.79 1360 accept 0 ALIGNMENT 811 Y12-4h13.p1k chr16 16 1008 854178 855177 F 993 95.27 1390 ambiguous_trans 15 ALIGNMENT 808 Y12-4h13.p1k chr04 1008 16 1208063 1209062 C 993 95.17 1390 ambiguous_trans 17 ALIGNMENT 814 Y12-4h13.p1k chr16 1008 16 57824 58823 C 993 95.37 1390 ambiguous_trans 10 ALIGNMENT 808 Y12-4h13.p1k chr12 1008 16 652195 653194 C 993 95.17 1390 ambiguous_trans 19 ALIGNMENT 808 Y12-4h13.p1k chr05 16 1008 496044 497043 F 993 95.17 1390 ambiguous_trans 18 ALIGNMENT 799 Y12-4h13.p1k chr04 16 1008 881847 882846 F 993 94.86 1390 ambiguous_trans 25 ALIGNMENT 811 Y12-4h13.p1k chr12 16 1008 479527 480526 F 993 95.27 1390 ambiguous_trans 13 ALIGNMENT 808 Y12-4h13.p1k chr13 1008 16 185537 186536 C 993 95.17 1390 ambiguous_trans 20 ALIGNMENT 820 Y12-4h13.p1k chr05 16 1008 446945 447944 F 993 95.57 1390 ambiguous_trans 7 ALIGNMENT 0 Y12-4h14.p1k chrm 62 260 53229 53228 F 199 0.00 1498 reject_low 3 ALIGNMENT 863 Y12-4h14.q1k chrm 1109 38 17353 18433 C 1072 97.48 1347 accept 0 ALIGNMENT 678 Y12-4h14.p1k chrm 19 1148 13383 14465 F 1130 93.10 1498 accept 0 ALIGNMENT 0 Y12-4h14.p1k chrm 62 297 13628 13627 F 236 0.00 1498 reject_low 1 ALIGNMENT 0 Y12-4h14.p1k chrm 255 62 81390 81389 C 194 0.00 1498 reject_low 4 ALIGNMENT 0 Y12-4h14.p1k chrm 359 821 13688 13687 F 463 0.00 1498 reject_low 1 ALIGNMENT 0 Y12-4h14.q1k chrm 756 541 15168 15374 C 216 0.00 1347 reject_low 1 ALIGNMENT 36 Y12-4h14.p1k chrm 302 250 56255 56309 C 53 90.57 1498 reject_low 2 ALIGNMENT 0 Y12-4h14.p1k chrm 301 821 53267 53266 F 521 0.00 1498 reject_low 3 ALIGNMENT 0 Y12-4h14.p1k chrm 821 292 81355 81354 C 530 0.00 1498 reject_low 4 ALIGNMENT 22 Y12-4h14.p1k chrm 291 256 81354 81389 C 36 91.67 1498 reject_low 4 ALIGNMENT 26 Y12-4h14.q1k chrm 138 38 15786 15886 C 101 78.22 1347 reject_low 1 ALIGNMENT 26 Y12-4h14.q1k chrm 959 757 14965 15167 C 203 75.86 1347 reject_low 1 ALIGNMENT 0 Y12-4h14.q1k chrm 482 139 15433 15785 C 344 0.00 1347 reject_low 1 ALIGNMENT 28 Y12-4h14.p1k chrm 261 300 53229 53267 F 40 95.00 1498 reject_low 3 ALIGNMENT 0 Y12-4h14.p1k chrm 249 62 56310 56309 C 188 0.00 1498 reject_low 2 ALIGNMENT 44 Y12-4h14.p1k chrm 298 358 13628 13688 F 61 100.00 1498 reject_low 1 ALIGNMENT 0 Y12-4h14.p1k chrm 821 303 56256 56255 C 519 0.00 1498 reject_low 2 ALIGNMENT 26 Y12-4h14.q1k chrm 540 483 15375 15432 C 58 84.48 1347 reject_low 1 ALIGNMENT 1002 Y12-4h15.p1k chr07 1210 18 754205 755410 C 1193 95.98 1417 accept 0 ALIGNMENT 974 Y12-4h15.q1k chr07 36 1226 750289 751483 F 1191 94.54 1442 accept 0 ALIGNMENT 1041 Y12-4h16.p1k chr13 1241 19 79379 80612 C 1223 96.08 1428 accept 0 ALIGNMENT 948 Y12-4h16.q1k chr13 27 1119 74952 76068 F 1093 96.71 1345 accept 0 ALIGNMENT 0 Y12-4h17.p1k chr04 870 532 1175424 1175423 C 339 0.00 1394 reject_low 8 ALIGNMENT 0 Y12-4h17.p1k chr08 62 856 146324 146323 F 795 0.00 1394 reject_low 6 ALIGNMENT 957 Y12-4h17.q1k chr07 1154 34 1029216 1030343 C 1121 95.81 1327 accept_chi 0 ALIGNMENT 0 Y12-4h17.p1k chr02 856 62 198058 198057 C 795 0.00 1394 reject_low 4 ALIGNMENT 0 Y12-4h17.p1k chr16 856 62 856882 856881 C 795 0.00 1394 reject_low 7 ALIGNMENT 0 Y12-4h17.p1k chr04 856 62 668432 668431 C 795 0.00 1394 reject_low 5 ALIGNMENT 103 Y12-4h17.p1k chr08 857 1080 146324 146552 F 224 83.93 1394 reject_low 6 ALIGNMENT 25 Y12-4h17.p1k chr04 531 489 1175423 1175465 C 43 90.70 1394 reject_low 8 ALIGNMENT 104 Y12-4h17.p1k chr04 1081 857 668202 668431 C 225 83.56 1394 reject_low 5 ALIGNMENT 102 Y12-4h17.p1k chr16 1080 857 856653 856881 C 224 83.48 1394 reject_low 7 ALIGNMENT 0 Y12-4h17.p1k chr04 62 864 1175133 1175132 F 803 0.00 1394 reject_low 9 ALIGNMENT 85 Y12-4h17.p1k chr07 1136 897 845349 845596 C 240 80.42 1394 reject_low 2 ALIGNMENT 83 Y12-4h17.p1k chr04 865 1033 1175133 1175306 F 169 85.21 1394 reject_low 9 ALIGNMENT 0 Y12-4h17.p1k chr04 488 62 1175466 1175465 C 427 0.00 1394 reject_low 8 ALIGNMENT 119 Y12-4h17.p1k chr16 1081 857 880493 880722 C 225 85.78 1394 reject_low 3 ALIGNMENT 997 Y12-4h17.p1k chr15 1310 21 354004 355312 C 1290 94.34 1394 accept_chi 1 ALIGNMENT 104 Y12-4h17.p1k chr02 1081 857 197828 198057 C 225 83.56 1394 reject_low 4 ALIGNMENT 0 Y12-4h17.p1k chr16 856 62 880723 880722 C 795 0.00 1394 reject_low 3 ALIGNMENT 0 Y12-4h17.p1k chr07 896 62 845597 845596 C 835 0.00 1394 reject_low 2 ALIGNMENT 951 Y12-4h18.p1k chr15 1118 22 550230 551343 C 1097 96.44 1352 accept 0 ALIGNMENT 889 Y12-4h18.q1k chr15 37 1031 546320 547328 F 995 97.69 1303 accept 0 ALIGNMENT 974 Y12-4h19.p1k chr14 27 1181 696724 697893 F 1155 95.84 1338 accept 0 ALIGNMENT 981 Y12-4h20.q1k chr03 36 1191 176292 177461 F 1156 96.89 1370 accept 0 ALIGNMENT 1007 Y12-4h20.p1k chr03 1182 21 181387 182559 C 1162 96.82 1340 accept 0 ALIGNMENT 0 Y12-4h21.p1k chr12 270 850 490543 490542 F 581 0.00 1330 reject_low 3 ALIGNMENT 1065 Y12-4h21.p1k chr12 18 1235 452323 453559 F 1218 96.39 1330 accept_chi 1 ALIGNMENT 972 Y12-4h21.q1k chr02 39 1257 74385 75606 F 1219 93.27 1350 accept_chi 0 ALIGNMENT 1065 Y12-4h21.p1k chr12 18 1235 461460 462696 F 1218 96.39 1330 accept_chi 2 ALIGNMENT 241 Y12-4h21.p1k chr12 18 269 490291 490543 F 252 98.81 1330 reject_low 3 ALIGNMENT 0 Y12-4h22.q1k chr15 881 777 980679 980678 C 105 0.00 1332 reject_low 9 ALIGNMENT 0 Y12-4h22.q1k chr13 62 666 196061 196060 F 605 0.00 1332 reject_low 3 ALIGNMENT 0 Y12-4h22.q1k chr15 664 62 464562 464561 C 603 0.00 1332 reject_low 5 ALIGNMENT 0 Y12-4h22.q1k chr01 673 62 139257 139256 C 612 0.00 1332 reject_low 7 ALIGNMENT 0 Y12-4h22.q1k chr08 62 673 388896 388895 F 612 0.00 1332 reject_low 8 ALIGNMENT 97 Y12-4h22.q1k chr08 674 776 388896 388998 F 103 98.06 1332 reject_low 8 ALIGNMENT 102 Y12-4h22.q1k chr12 776 666 92547 92657 C 111 97.30 1332 reject_low 4 ALIGNMENT 0 Y12-4h22.q1k chr14 673 62 568219 568218 C 612 0.00 1332 reject_low 2 ALIGNMENT 0 Y12-4h22.q1k chr15 881 779 301096 301095 C 103 0.00 1332 reject_low 6 ALIGNMENT 98 Y12-4h22.q1k chr15 778 667 301095 301205 C 112 96.43 1332 reject_low 6 ALIGNMENT 104 Y12-4h22.q1k chr13 667 776 196061 196170 F 110 98.18 1332 reject_low 3 ALIGNMENT 0 Y12-4h22.q1k chr14 881 785 547089 547088 C 97 0.00 1332 reject_low 1 ALIGNMENT 81 Y12-4h22.q1k chr15 776 667 980678 980789 C 110 91.82 1332 reject_low 9 ALIGNMENT 0 Y12-4h22.q1k chr14 881 785 568110 568109 C 97 0.00 1332 reject_low 2 ALIGNMENT 0 Y12-4h22.q1k chr15 881 777 464452 464451 C 105 0.00 1332 reject_low 5 ALIGNMENT 0 Y12-4h22.q1k chr15 666 62 980790 980789 C 605 0.00 1332 reject_low 9 ALIGNMENT 100 Y12-4h22.q1k chr14 784 674 547088 547197 C 111 97.30 1332 reject_low 1 ALIGNMENT 0 Y12-4h22.q1k chr12 665 62 92658 92657 C 604 0.00 1332 reject_low 4 ALIGNMENT 0 Y12-4h22.q1k chr14 673 62 547198 547197 C 612 0.00 1332 reject_low 1 ALIGNMENT 0 Y12-4h22.q1k chr15 666 62 301206 301205 C 605 0.00 1332 reject_low 6 ALIGNMENT 0 Y12-4h22.q1k chr13 777 881 196170 196169 F 105 0.00 1332 reject_low 3 ALIGNMENT 0 Y12-4h22.q1k chr12 881 777 92548 92547 C 105 0.00 1332 reject_low 4 ALIGNMENT 0 Y12-4h22.q1k chr08 777 881 388998 388997 F 105 0.00 1332 reject_low 8 ALIGNMENT 988 Y12-4h22.q1k chr06 1146 27 100988 102120 C 1120 96.79 1332 accept 0 ALIGNMENT 97 Y12-4h22.q1k chr15 776 665 464451 464561 C 112 96.43 1332 reject_low 5 ALIGNMENT 945 Y12-4h22.p1k chr06 18 1173 97345 98504 F 1156 95.33 1323 accept 0 ALIGNMENT 101 Y12-4h22.q1k chr01 777 674 139153 139256 C 104 99.04 1332 reject_low 7 ALIGNMENT 0 Y12-4h22.q1k chr01 881 778 139154 139153 C 104 0.00 1332 reject_low 7 ALIGNMENT 100 Y12-4h22.q1k chr14 784 674 568109 568218 C 111 97.30 1332 reject_low 2 ALIGNMENT 852 Y12-4h23.q1k chr12 35 1193 459966 461167 F 1159 92.84 1318 accept 0 ALIGNMENT 910 Y12-4h23.p1k chr12 985 17 455665 456641 C 969 98.66 1238 reject_low 1 ALIGNMENT 0 Y12-4h23.q1k chr12 62 957 489754 489753 F 896 0.00 1318 reject_low 2 ALIGNMENT 0 Y12-4h23.q1k chr12 62 587 451419 451418 F 526 0.00 1318 reject_low 1 ALIGNMENT 910 Y12-4h23.p1k chr12 985 17 464802 465778 C 969 98.66 1238 accept 0 ALIGNMENT 138 Y12-4h23.q1k chr12 958 1193 489754 489998 F 236 87.71 1318 reject_low 2 ALIGNMENT 461 Y12-4h23.q1k chr12 588 1193 451419 452030 F 606 93.56 1318 reject_low 1 ALIGNMENT 0 Y12-4h24.p1k chr08 644 872 382311 382310 F 229 0.00 1290 reject_low 1 ALIGNMENT 0 Y12-4h24.p1k chr08 62 324 381993 381992 F 263 0.00 1290 reject_low 1 ALIGNMENT 297 Y12-4h24.p1k chr08 325 643 381993 382311 F 319 98.12 1290 reject_low 1 ALIGNMENT 1029 Y12-4h24.p1k chr14 1208 18 331258 332463 C 1191 96.47 1290 accept 0 ALIGNMENT 999 Y12-4h24.q1k chr14 35 1139 327083 328199 F 1105 97.65 1322 accept 0 ALIGNMENT 0 Y12-4i01.p1k chr02 870 445 780240 780239 C 426 0.00 1395 reject_low 7 ALIGNMENT 0 Y12-4i01.p1k chr14 425 62 579990 579989 C 364 0.00 1395 reject_low 6 ALIGNMENT 0 Y12-4i01.p1k chr13 460 870 588637 588636 F 411 0.00 1395 reject_low 2 ALIGNMENT 0 Y12-4i01.p1k chr02 391 62 780451 780450 C 330 0.00 1395 reject_low 1 ALIGNMENT 0 Y12-4i01.p1k chr15 62 422 936836 936835 F 361 0.00 1395 reject_low 5 ALIGNMENT 0 Y12-4i01.p1k chr04 62 427 1346522 1346521 F 366 0.00 1395 reject_low 4 ALIGNMENT 27 Y12-4i01.p1k chr02 460 421 455751 455790 C 40 92.50 1395 reject_low 3 ALIGNMENT 0 Y12-4i01.p1k chr04 461 870 1346554 1346553 F 410 0.00 1395 reject_low 4 ALIGNMENT 0 Y12-4i01.p1k chr15 454 870 936866 936865 F 417 0.00 1395 reject_low 5 ALIGNMENT 25 Y12-4i01.p1k chr04 428 460 1346522 1346554 F 33 100.00 1395 reject_low 4 ALIGNMENT 28 Y12-4i01.p1k chr13 392 459 588570 588637 F 68 83.82 1395 reject_low 2 ALIGNMENT 24 Y12-4i01.p1k chr15 423 453 936836 936866 F 31 96.77 1395 reject_low 5 ALIGNMENT 0 Y12-4i01.p1k chr02 870 457 780387 780386 C 414 0.00 1395 reject_low 1 ALIGNMENT 0 Y12-4i01.p1k chr02 423 62 780260 780259 C 362 0.00 1395 reject_low 7 ALIGNMENT 0 Y12-4i01.p1k chr14 870 462 579955 579954 C 409 0.00 1395 reject_low 6 ALIGNMENT 20 Y12-4i01.p1k chr02 444 424 780239 780259 C 21 100.00 1395 reject_low 7 ALIGNMENT 1040 Y12-4i01.q1k chr08 1195 39 70136 71300 C 1157 97.15 1354 accept 0 ALIGNMENT 0 Y12-4i01.p1k chr13 62 391 588570 588569 F 330 0.00 1395 reject_low 2 ALIGNMENT 1005 Y12-4i01.p1k chr08 20 1239 66153 67388 F 1220 94.92 1395 accept 0 ALIGNMENT 0 Y12-4i01.p1k chr02 870 461 455752 455751 C 410 0.00 1395 reject_low 3 ALIGNMENT 29 Y12-4i01.p1k chr02 456 392 780386 780450 C 65 84.62 1395 reject_low 1 ALIGNMENT 21 Y12-4i01.p1k chr14 461 426 579954 579989 C 36 94.44 1395 reject_low 6 ALIGNMENT 0 Y12-4i01.p1k chr02 420 62 455791 455790 C 359 0.00 1395 reject_low 3 ALIGNMENT 471 Y12-4i02.p1k chr02 629 1 277582 278213 C 629 92.85 902 accept 0 ALIGNMENT 1050 Y12-4i02.q1k chr02 38 1261 274703 275938 F 1224 95.75 1401 accept 0 ALIGNMENT 0 Y12-4i03.p1k chr04 717 62 568951 568950 C 656 0.00 1378 reject_low 7 ALIGNMENT 74 Y12-4i03.p1k chr10 791 718 355288 355361 C 74 100.00 1378 reject_low 8 ALIGNMENT 0 Y12-4i03.p1k chr13 792 861 131898 131897 F 70 0.00 1378 reject_low 10 ALIGNMENT 74 Y12-4i03.p1k chr13 718 791 131825 131898 F 74 100.00 1378 reject_low 10 ALIGNMENT 76 Y12-4i03.p1k chr07 703 791 828712 828801 F 89 95.51 1378 reject_low 2 ALIGNMENT 0 Y12-4i03.p1k chr05 861 790 138667 138666 C 72 0.00 1378 reject_low 3 ALIGNMENT 0 Y12-4i03.p1k chr10 861 792 355289 355288 C 70 0.00 1378 reject_low 8 ALIGNMENT 0 Y12-4i03.p1k chr07 803 804 735985 736330 C 0 0.00 1378 accept 0 ALIGNMENT 728 Y12-4i03.p1k chr07 805 30 736329 737104 C 776 98.97 1378|2,0 accept 0 ALIGNMENT 0 Y12-4i03.p1k chr04 861 792 568878 568877 C 70 0.00 1378 reject_low 7 ALIGNMENT 0 Y12-4i03.p1k chr13 792 861 747964 747963 F 70 0.00 1378 reject_low 5 ALIGNMENT 74 Y12-4i03.p1k chr10 718 791 374422 374495 F 74 100.00 1378 reject_low 9 ALIGNMENT 0 Y12-4i03.p1k chr02 717 62 405944 405943 C 656 0.00 1378 reject_low 6 ALIGNMENT 0 Y12-4i03.p1k chr07 792 861 828801 828800 F 70 0.00 1378 reject_low 2 ALIGNMENT 77 Y12-4i03.p1k chr05 789 710 138666 138745 C 80 98.75 1378 reject_low 3 ALIGNMENT 0 Y12-4i03.p1k chr05 709 62 138746 138745 C 648 0.00 1378 reject_low 3 ALIGNMENT 0 Y12-4i03.p1k chr11 792 861 162565 162564 F 70 0.00 1378 reject_low 4 ALIGNMENT 188 Y12-4i03.p1k chr07 1138 802 735636 735986 C 337 88.13 1378|0,2 accept 0 ALIGNMENT 0 Y12-4i03.p1k chr11 62 711 162486 162485 F 650 0.00 1378 reject_low 4 ALIGNMENT 0 Y12-4i03.p1k chr07 703 62 405559 405558 C 642 0.00 1378 reject_low 1 ALIGNMENT 0 Y12-4i03.p1k chr10 717 62 355362 355361 C 656 0.00 1378 reject_low 8 ALIGNMENT 0 Y12-4i03.p1k chr10 792 861 374495 374494 F 70 0.00 1378 reject_low 9 ALIGNMENT 77 Y12-4i03.p1k chr11 712 791 162486 162565 F 80 98.75 1378 reject_low 4 ALIGNMENT 77 Y12-4i03.p1k chr13 712 791 747885 747964 F 80 98.75 1378 reject_low 5 ALIGNMENT 0 Y12-4i03.p1k chr10 62 717 374422 374421 F 656 0.00 1378 reject_low 9 ALIGNMENT 74 Y12-4i03.p1k chr04 791 718 568877 568950 C 74 100.00 1378 reject_low 7 ALIGNMENT 74 Y12-4i03.p1k chr02 791 718 405870 405943 C 74 100.00 1378 reject_low 6 ALIGNMENT 1049 Y12-4i03.q1k chr07 33 1204 731265 732454 F 1172 97.18 1363 accept 0 ALIGNMENT 0 Y12-4i03.p1k chr13 62 711 747885 747884 F 650 0.00 1378 reject_low 5 ALIGNMENT 0 Y12-4i03.p1k chr02 861 792 405871 405870 C 70 0.00 1378 reject_low 6 ALIGNMENT 79 Y12-4i03.p1k chr07 791 704 405471 405558 C 88 96.59 1378 reject_low 1 ALIGNMENT 0 Y12-4i03.p1k chr07 62 702 828712 828711 F 641 0.00 1378 reject_low 2 ALIGNMENT 0 Y12-4i03.p1k chr07 861 792 405472 405471 C 70 0.00 1378 reject_low 1 ALIGNMENT 0 Y12-4i03.p1k chr13 62 717 131825 131824 F 656 0.00 1378 reject_low 10 ALIGNMENT 951 Y12-4i04.p1k chr14 18 1153 81546 82696 F 1136 95.95 1387 accept 0 ALIGNMENT 1036 Y12-4i04.q1k chr14 1164 34 84232 85364 C 1131 97.70 1425 accept 0 ALIGNMENT 1027 Y12-4i07.q1k chr07 35 1192 449402 450561 F 1158 97.06 1366 accept 0 ALIGNMENT 1009 Y12-4i07.p1k chr07 1123 20 451829 452943 C 1104 97.74 1426 accept 0 ALIGNMENT 944 Y12-4i08.p1k chr04 1088 21 287998 289083 C 1068 97.00 1381 accept 0 ALIGNMENT 0 Y12-4i09.p1k chr12 62 713 451419 451418 F 652 0.00 1443 reject_low 1 ALIGNMENT 275 Y12-4i09.p1k chr12 714 1142 451419 451860 F 429 91.14 1443 reject_low 1 ALIGNMENT 797 Y12-4i09.p1k chr12 20 1142 459824 460997 F 1123 92.61 1443 accept 0 ALIGNMENT 1043 Y12-4i09.q1k chr12 1197 38 463540 464711 C 1160 97.33 1375 accept 0 ALIGNMENT 1043 Y12-4i09.q1k chr12 1197 38 454403 455574 C 1160 97.33 1375 reject_low 1 ALIGNMENT 987 Y12-4i10.p1k chr07 25 1186 128845 130024 F 1162 96.39 1416 accept 0 ALIGNMENT 891 Y12-4i11.q1k chr04 1049 29 736976 738018 C 1021 97.45 1279 accept 0 ALIGNMENT 70 Y12-4i11.p1k chr07 323 246 93711 93788 C 78 97.44 1454 reject_low 1 ALIGNMENT 0 Y12-4i11.p1k chr07 245 62 93789 93788 C 184 0.00 1454 reject_low 1 ALIGNMENT 1008 Y12-4i11.p1k chr04 17 1233 733022 734251 F 1217 95.56 1454 accept 0 ALIGNMENT 0 Y12-4i11.p1k chr07 866 324 93712 93711 C 543 0.00 1454 reject_low 1 ALIGNMENT 1020 Y12-4i12.q1k chr12 1211 34 855270 856449 C 1178 95.08 1421 accept 0 ALIGNMENT 1035 Y12-4i12.p1k chr12 18 1155 851295 852437 F 1138 98.33 1426 accept 0 ALIGNMENT 1003 Y12-4i13.p1k chr13 1182 19 757471 758644 C 1164 95.70 1416 accept 0 ALIGNMENT 976 Y12-4i13.q1k chr13 38 1117 753530 754624 F 1080 97.59 1326 accept 0 ALIGNMENT 180 Y12-4i13.q1k chr15 38 257 900551 900770 F 220 94.55 1326 reject_low 1 ALIGNMENT 0 Y12-4i13.q1k chr15 258 878 900770 900769 F 621 0.00 1326 reject_low 1 ALIGNMENT 999 Y12-4i14.p1k chr10 19 1225 720306 721531 F 1207 95.53 1425 accept 0 ALIGNMENT 913 Y12-4i14.q1k chr10 1099 35 723376 724451 C 1065 96.15 1343 accept 0 ALIGNMENT 0 Y12-4i15.p1k chr07 388 387 434529 434574 F 0 0.00 1406 accept 0 ALIGNMENT 632 Y12-4i15.p1k chr07 385 1180 434572 435386 F 796 94.72 1406|3,0 accept 0 ALIGNMENT 338 Y12-4i15.p1k chr07 22 390 434164 434531 F 369 97.83 1406|0,3 accept 0 ALIGNMENT 944 Y12-4i15.q1k chr07 1143 38 437804 438924 C 1106 96.29 1326 accept 0 ALIGNMENT 549 Y12-4i16.p1k chr10 21 1111 577277 578355 F 1091 84.78 1405 accept 0 ALIGNMENT 974 Y12-4i17.q1k chr11 1190 39 449082 450249 C 1152 96.35 1327 accept 0 ALIGNMENT 983 Y12-4i17.p1k chr11 18 1143 445521 446649 F 1126 97.51 1366 accept 0 ALIGNMENT 974 Y12-4i18.q1k chr04 28 1179 328086 329248 F 1152 95.92 1384 accept 0 ALIGNMENT 945 Y12-4i18.p1k chr04 1092 16 330769 331859 C 1077 96.84 1336 accept 0 ALIGNMENT 1014 Y12-4i19.p1k chr15 1185 21 988396 989557 C 1165 96.48 1373 accept 0 ALIGNMENT 1075 Y12-4i19.q1k chr15 37 1260 985029 986257 F 1224 96.49 1354 accept 0 ALIGNMENT 0 Y12-4i20.p1k chr15 62 227 699834 699833 F 166 0.00 1422 reject_low 2 ALIGNMENT 912 Y12-4i20.q1k chr15 1207 35 463102 464285 C 1173 93.95 1367 accept 0 ALIGNMENT 306 Y12-4i20.p1k chr15 228 932 699834 700538 F 705 81.56 1422 reject_low 2 ALIGNMENT 412 Y12-4i20.p1k chr12 968 23 612362 613307 C 946 81.61 1422 reject_low 1 ALIGNMENT 1077 Y12-4i20.p1k chr15 23 1351 460339 461663 F 1329 94.58 1422 accept 0 ALIGNMENT 871 Y12-4i21.q1k chr15 1092 60 888141 889190 C 1033 95.74 1268 accept 0 ALIGNMENT 1002 Y12-4i21.p1k chr15 23 1178 883586 884755 F 1156 96.71 1329 accept 0 ALIGNMENT 960 Y12-4i22.p1k chr04 23 1164 1458023 1459185 F 1142 95.88 1301 accept 0 ALIGNMENT 990 Y12-4i22.q1k chr07 36 1267 710921 712166 F 1232 94.16 1391 ambiguous_trans 2 ALIGNMENT 995 Y12-4i22.q1k chr09 36 1267 209017 210261 F 1232 94.32 1391 ambiguous_trans 1 ALIGNMENT 0 Y12-4i23.p1k chr15 894 643 117703 117702 C 252 0.00 1317 ambiguous_trans 11 ALIGNMENT 0 Y12-4i23.p1k chr05 646 894 449319 449318 F 249 0.00 1317 ambiguous_trans 16 ALIGNMENT 29 Y12-4i23.p1k chr14 642 613 102549 102578 C 30 100.00 1317 ambiguous_trans_ua 26 ALIGNMENT 534 Y12-4i23.p1k chr10 642 17 472377 473010 C 626 96.17 1317 ambiguous_trans 14 ALIGNMENT 0 Y12-4i23.p1k chr05 894 592 449347 449346 C 303 0.00 1317 ambiguous_trans_ua 24 ALIGNMENT 561 Y12-4i23.p1k chr05 17 642 497783 498416 F 626 97.60 1317 ambiguous_trans 10 ALIGNMENT 0 Y12-4i23.p1k chr14 612 62 102579 102578 C 551 0.00 1317 ambiguous_trans_ua 26 ALIGNMENT 590 Y12-4i23.p1k chr13 648 17 184164 184797 C 632 98.73 1317 ambiguous_trans 1 ALIGNMENT 51 Y12-4i23.p1k chr05 591 485 449346 449452 C 107 85.98 1317 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-4i23.p1k chr16 590 62 56409 56408 C 529 0.00 1317 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-4i23.p1k chr07 643 894 823311 823310 F 252 0.00 1317 ambiguous_trans 3 ALIGNMENT 564 Y12-4i23.p1k chr13 17 642 377988 378621 F 626 97.76 1317 ambiguous_trans 8 ALIGNMENT 463 Y12-4i23.p1k chr05 17 645 448684 449319 F 629 92.37 1317 ambiguous_trans 16 ALIGNMENT 543 Y12-4i23.p1k chr15 642 17 117702 118335 C 626 96.65 1317 ambiguous_trans 11 ALIGNMENT 0 Y12-4i23.p1k chr05 484 62 449453 449452 C 423 0.00 1317 ambiguous_trans_ua 24 ALIGNMENT 584 Y12-4i23.p1k chr08 17 642 549010 549637 F 626 98.72 1317 ambiguous_trans 5 ALIGNMENT 460 Y12-4i23.p1k chr16 642 17 56452 57084 C 626 92.33 1317 ambiguous_trans 18 ALIGNMENT 0 Y12-4i23.p1k chr13 894 649 184165 184164 C 246 0.00 1317 ambiguous_trans 1 ALIGNMENT 510 Y12-4i23.p1k chr07 642 17 535764 536397 C 626 95.05 1317 ambiguous_trans 15 ALIGNMENT 536 Y12-4i23.p1k chr14 17 642 101896 102523 F 626 96.33 1317 ambiguous_trans 13 ALIGNMENT 0 Y12-4i23.p1k chr15 394 62 594760 594759 C 333 0.00 1317 ambiguous_trans_ua 23 ALIGNMENT 436 Y12-4i23.p1k chr01 17 642 165531 166163 F 626 91.21 1317 ambiguous_trans 21 ALIGNMENT 0 Y12-4i23.p1k chr02 894 643 259577 259576 C 252 0.00 1317 ambiguous_trans 4 ALIGNMENT 0 Y12-4i23.p1k chr16 599 62 56452 56451 C 538 0.00 1317 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-4i23.p1k chr01 62 330 160259 160258 F 269 0.00 1317 ambiguous_trans 22 ALIGNMENT 81 Y12-4i23.p1k chr15 524 395 594630 594759 C 130 90.00 1317 ambiguous_trans_ua 23 ALIGNMENT 564 Y12-4i23.p1k chr16 642 17 844408 845041 C 626 97.76 1317 ambiguous_trans 9 ALIGNMENT 0 Y12-4i23.p1k chr04 894 643 1095763 1095762 C 252 0.00 1317 ambiguous_trans 7 ALIGNMENT 590 Y12-4i23.p1k chr02 642 17 259576 260203 C 626 99.04 1317 ambiguous_trans 4 ALIGNMENT 594 Y12-4i23.p1k chr15 646 17 594817 595448 C 630 99.05 1317 ambiguous_trans 2 ALIGNMENT 0 Y12-4i23.p1k chr14 643 894 102523 102522 F 252 0.00 1317 ambiguous_trans 13 ALIGNMENT 0 Y12-4i23.p1k chr08 643 894 549637 549636 F 252 0.00 1317 ambiguous_trans 5 ALIGNMENT 533 Y12-4i23.p1k chr16 17 644 855917 856552 F 628 96.02 1317 ambiguous_trans 12 ALIGNMENT 0 Y12-4i23.p1k chr14 894 643 102550 102549 C 252 0.00 1317 ambiguous_trans_ua 26 ALIGNMENT 0 Y12-4i23.p1k chr15 894 647 594818 594817 C 248 0.00 1317 ambiguous_trans 2 ALIGNMENT 0 Y12-4i23.p1k chr05 643 894 498416 498415 F 252 0.00 1317 ambiguous_trans 10 ALIGNMENT 440 Y12-4i23.p1k chr04 17 642 883586 884215 F 626 91.53 1317 ambiguous_trans 20 ALIGNMENT 0 Y12-4i23.p1k chr01 643 894 166163 166162 F 252 0.00 1317 ambiguous_trans 21 ALIGNMENT 0 Y12-4i23.p1k chr16 645 894 856552 856551 F 250 0.00 1317 ambiguous_trans 12 ALIGNMENT 0 Y12-4i23.p1k chr16 894 643 844409 844408 C 252 0.00 1317 ambiguous_trans 9 ALIGNMENT 189 Y12-4i23.p1k chr01 331 642 160259 160575 F 312 89.42 1317 ambiguous_trans 22 ALIGNMENT 0 Y12-4i23.p1k chr07 894 643 535765 535764 C 252 0.00 1317 ambiguous_trans 15 ALIGNMENT 564 Y12-4i23.p1k chr04 642 17 1095762 1096395 C 626 97.76 1317 ambiguous_trans 7 ALIGNMENT 0 Y12-4i23.p1k chr10 894 643 472378 472377 C 252 0.00 1317 ambiguous_trans 14 ALIGNMENT 0 Y12-4i23.p1k chr16 894 643 56358 56357 C 252 0.00 1317 ambiguous_trans_ua 27 ALIGNMENT 593 Y12-4i23.p1k chr07 17 642 822684 823311 F 626 99.20 1317 ambiguous_trans 3 ALIGNMENT 440 Y12-4i23.p1k chr04 17 642 650785 651414 F 626 91.53 1317 ambiguous_trans 19 ALIGNMENT 0 Y12-4i23.p1k chr16 894 643 56453 56452 C 252 0.00 1317 ambiguous_trans 18 ALIGNMENT 0 Y12-4i23.p1k chr15 894 525 594631 594630 C 370 0.00 1317 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-4i23.p1k chr16 894 643 56410 56409 C 252 0.00 1317 ambiguous_trans_ua 25 ALIGNMENT 466 Y12-4i23.p1k chr13 642 17 196332 196964 C 626 92.65 1317 ambiguous_trans 17 ALIGNMENT 20 Y12-4i23.p1k chr16 642 591 56357 56408 C 52 82.69 1317 ambiguous_trans_ua 27 ALIGNMENT 0 Y12-4i23.p1k chr01 643 894 160575 160574 F 252 0.00 1317 ambiguous_trans 22 ALIGNMENT 0 Y12-4i23.p1k chr13 643 894 378621 378620 F 252 0.00 1317 ambiguous_trans 8 ALIGNMENT 0 Y12-4i23.p1k chr12 644 894 221007 221006 F 251 0.00 1317 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-4i23.p1k chr13 894 643 196333 196332 C 252 0.00 1317 ambiguous_trans 17 ALIGNMENT 0 Y12-4i23.p1k chr04 643 894 651414 651413 F 252 0.00 1317 ambiguous_trans 19 ALIGNMENT 562 Y12-4i23.p1k chr12 17 643 220373 221007 F 627 97.61 1317 ambiguous_trans_ua 6 ALIGNMENT 0 Y12-4i23.p1k chr04 643 894 884215 884214 F 252 0.00 1317 ambiguous_trans 20 ALIGNMENT 962 Y12-4i23.q1k chr07 1209 37 705074 706254 C 1173 95.14 1301 accept 0 ALIGNMENT 37 Y12-4i23.p1k chr16 642 600 56409 56451 C 43 97.67 1317 ambiguous_trans_ua 25 ALIGNMENT 1044 Y12-4i24.p1k chr04 1299 23 1267041 1268316 C 1277 94.60 1331 accept 0 ALIGNMENT 1028 Y12-4i24.q1k chr04 35 1248 1264335 1265558 F 1214 96.05 1321 accept 0 ALIGNMENT 1006 Y12-4j01.p1k chr04 1268 18 135046 136321 C 1251 94.96 1395 accept 0 ALIGNMENT 428 Y12-4j01.q1k chr04 47 945 131167 132061 F 899 83.09 1334 accept 0 ALIGNMENT 0 Y12-4j02.q1k chr02 878 387 427651 427650 C 492 0.00 1379 reject_low 1 ALIGNMENT 0 Y12-4j02.q1k chr01 333 878 226844 226843 F 546 0.00 1379 reject_low 2 ALIGNMENT 958 Y12-4j02.p1k chr02 24 1107 423965 425062 F 1084 97.14 1335 accept 0 ALIGNMENT 995 Y12-4j02.q1k chr02 1178 26 428695 429860 C 1153 95.40 1379 accept 0 ALIGNMENT 219 Y12-4j02.q1k chr08 26 332 553184 553492 F 307 90.88 1379 reject_low 3 ALIGNMENT 219 Y12-4j02.q1k chr01 26 332 226536 226844 F 307 90.88 1379 reject_low 2 ALIGNMENT 0 Y12-4j02.q1k chr08 333 878 553492 553491 F 546 0.00 1379 reject_low 3 ALIGNMENT 250 Y12-4j02.q1k chr02 386 26 427650 428010 C 361 90.86 1379 reject_low 1 ALIGNMENT 913 Y12-4j03.p1k chr02 1048 24 742056 743090 C 1025 97.07 1337 accept_chi 1 ALIGNMENT 1025 Y12-4j03.q1k chr12 1247 37 858277 859499 C 1211 95.62 1465 accept_chi 0 ALIGNMENT 925 Y12-4j04.p1k chr16 23 1176 404531 405704 F 1154 94.97 1388 accept 0 ALIGNMENT 91 Y12-4j04.p1k chr02 944 1156 604931 605150 F 213 82.16 1388 reject_low 1 ALIGNMENT 0 Y12-4j04.p1k chr02 62 943 604931 604930 F 882 0.00 1388 reject_low 1 ALIGNMENT 978 Y12-4j04.q1k chr16 1142 35 409080 410199 C 1108 96.75 1418 accept 0 ALIGNMENT 0 Y12-4j06.q1k chr07 62 686 70179 70178 F 625 0.00 1404 reject_low 4 ALIGNMENT 0 Y12-4j06.q1k chr08 697 62 365409 365408 C 636 0.00 1404 reject_low 6 ALIGNMENT 0 Y12-4j06.q1k chr15 697 62 428038 428037 C 636 0.00 1404 reject_low 7 ALIGNMENT 23 Y12-4j06.q1k chr15 720 624 427928 428024 C 97 78.35 1404 reject_low 1 ALIGNMENT 0 Y12-4j06.q1k chr08 836 724 365384 365383 C 113 0.00 1404 reject_low 6 ALIGNMENT 23 Y12-4j06.q1k chr08 723 689 365428 365462 C 35 91.43 1404 reject_low 5 ALIGNMENT 0 Y12-4j06.q1k chr08 836 724 365429 365428 C 113 0.00 1404 reject_low 5 ALIGNMENT 0 Y12-4j06.q1k chr15 836 724 428013 428012 C 113 0.00 1404 reject_low 7 ALIGNMENT 0 Y12-4j06.q1k chr04 724 836 604278 604277 F 113 0.00 1404 reject_low 2 ALIGNMENT 25 Y12-4j06.q1k chr04 687 723 604242 604278 F 37 91.89 1404 reject_low 2 ALIGNMENT 0 Y12-4j06.q1k chr04 836 724 834008 834007 C 113 0.00 1404 reject_low 3 ALIGNMENT 0 Y12-4j06.q1k chr04 686 62 834044 834043 C 625 0.00 1404 reject_low 3 ALIGNMENT 0 Y12-4j06.q1k chr15 836 721 427929 427928 C 116 0.00 1404 reject_low 1 ALIGNMENT 25 Y12-4j06.q1k chr07 687 720 70179 70212 F 34 94.12 1404 reject_low 4 ALIGNMENT 0 Y12-4j06.q1k chr07 721 836 70212 70211 F 116 0.00 1404 reject_low 4 ALIGNMENT 968 Y12-4j06.q1k chr01 32 1161 115827 116969 F 1130 95.84 1404 accept 0 ALIGNMENT 0 Y12-4j06.q1k chr08 688 62 365463 365462 C 627 0.00 1404 reject_low 5 ALIGNMENT 991 Y12-4j06.p1k chr01 1202 18 120017 121216 C 1185 95.61 1409 accept 0 ALIGNMENT 21 Y12-4j06.q1k chr15 723 698 428012 428037 C 26 96.15 1404 reject_low 7 ALIGNMENT 25 Y12-4j06.q1k chr04 723 687 834007 834043 C 37 91.89 1404 reject_low 3 ALIGNMENT 21 Y12-4j06.q1k chr08 723 698 365383 365408 C 26 96.15 1404 reject_low 6 ALIGNMENT 0 Y12-4j06.q1k chr15 623 62 428025 428024 C 562 0.00 1404 reject_low 1 ALIGNMENT 0 Y12-4j06.q1k chr04 62 686 604242 604241 F 625 0.00 1404 reject_low 2 ALIGNMENT 955 Y12-4j07.p1k chr12 21 1096 741984 743078 F 1076 97.68 1411 accept 0 ALIGNMENT 867 Y12-4j07.q1k chr12 1070 36 745015 746058 C 1035 96.14 1339 accept 0 ALIGNMENT 0 Y12-4j08.q1k chr02 845 249 1598 1597 C 597 0.00 1392 reject_low 63 ALIGNMENT 73 Y12-4j08.q1k chr02 179 32 1486 1634 C 148 85.81 1392 reject_low 159 ALIGNMENT 93 Y12-4j08.q1k chr08 43 240 560417 560614 F 198 84.34 1392 reject_low 133 ALIGNMENT 0 Y12-4j08.q1k chr06 845 253 1073 1072 C 593 0.00 1392 reject_low 270 ALIGNMENT 0 Y12-4j08.q1k chr09 845 241 2022 2021 C 605 0.00 1392 reject_low 257 ALIGNMENT 0 Y12-4j08.p1k chr02 417 1018 4211 4216 F 602 0.00 1388 reject_low 314 ALIGNMENT 0 Y12-4j08.q1k chr12 172 62 7729 7728 C 111 0.00 1392 reject_low 307 ALIGNMENT 71 Y12-4j08.q1k chr15 35 179 1089508 1089653 F 145 85.52 1392 reject_low 174 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946386 946385 F 594 0.00 1392 reject_low 69 ALIGNMENT 0 Y12-4j08.q1k chr05 62 172 574915 574914 F 111 0.00 1392 reject_low 260 ALIGNMENT 71 Y12-4j08.q1k chr14 179 35 1574 1719 C 145 85.52 1392 reject_low 173 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 2080 2079 C 594 0.00 1392 reject_low 288 ALIGNMENT 909 Y12-4j08.q1k chr08 42 1113 560632 561717 F 1072 95.52 1392 reject_low 21 ALIGNMENT 0 Y12-4j08.q1k chr15 72 845 1089653 1089652 F 774 0.00 1392 reject_low 254 ALIGNMENT 51 Y12-4j08.q1k chr06 179 42 893 1030 C 138 81.16 1392 reject_low 228 ALIGNMENT 0 Y12-4j08.q1k chr09 209 62 2088 2087 C 148 0.00 1392 reject_low 265 ALIGNMENT 0 Y12-4j08.p1k chr13 62 137 3708 3707 F 76 0.00 1388 reject_low 313 ALIGNMENT 0 Y12-4j08.p1k chr16 267 248 944271 944266 C 20 0.00 1388 reject_low 312 ALIGNMENT 112 Y12-4j08.q1k chr05 215 32 1470 1654 C 184 89.67 1392 reject_low 81 ALIGNMENT 51 Y12-4j08.q1k chr12 32 107 1076613 1076689 F 76 92.11 1392 reject_low 205 ALIGNMENT 0 Y12-4j08.q1k chr07 180 845 1089394 1089393 F 666 0.00 1392 reject_low 169 ALIGNMENT 112 Y12-4j08.q1k chr16 42 251 946069 946278 F 210 86.67 1392 reject_low 91 ALIGNMENT 0 Y12-4j08.q1k chr15 216 845 1089653 1089652 F 630 0.00 1392 reject_low 125 ALIGNMENT 0 Y12-4j08.q1k chr09 845 72 1687 1686 C 774 0.00 1392 reject_low 249 ALIGNMENT 0 Y12-4j08.q1k chr14 845 253 1934 1933 C 593 0.00 1392 reject_low 274 ALIGNMENT 152 Y12-4j08.q1k chr08 32 251 560585 560805 F 220 92.27 1392 reject_low 30 ALIGNMENT 33 Y12-4j08.q1k chr12 187 252 1076265 1076330 F 66 84.85 1392 reject_low 297 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1069990 1069989 F 594 0.00 1392 reject_low 39 ALIGNMENT 53 Y12-4j08.p1k chr16 416 360 944168 944224 C 57 98.25 1388 reject_low 312 ALIGNMENT 75 Y12-4j08.q1k chr02 248 66 1705 1887 C 183 82.51 1392 reject_low 178 ALIGNMENT 913 Y12-4j08.q1k chr02 1113 35 610 1703 C 1079 95.46 1392 reject_low 23 ALIGNMENT 0 Y12-4j08.q1k chr05 144 845 575317 575316 F 702 0.00 1392 reject_low 189 ALIGNMENT 145 Y12-4j08.q1k chr07 42 251 1089149 1089358 F 210 91.90 1392 reject_low 38 ALIGNMENT 91 Y12-4j08.q1k chr12 32 215 1069842 1070026 F 184 85.87 1392 reject_low 121 ALIGNMENT 50 Y12-4j08.p1k chr06 1019 1101 3053 3139 F 83 87.95 1388 reject_low 310 ALIGNMENT 43 Y12-4j08.q1k chr12 240 173 7661 7728 C 68 89.71 1392 reject_low 307 ALIGNMENT 80 Y12-4j08.q1k chr15 42 248 1089300 1089506 F 207 81.64 1392 reject_low 164 ALIGNMENT 909 Y12-4j08.q1k chr12 1113 42 6450 7535 C 1072 95.52 1392 reject_low 28 ALIGNMENT 113 Y12-4j08.q1k chr04 32 251 1530196 1530416 F 220 86.36 1392 reject_low 72 ALIGNMENT 0 Y12-4j08.p1k chr02 298 359 4138 4153 F 62 0.00 1388 reject_low 314 ALIGNMENT 0 Y12-4j08.q1k chr16 845 252 1772 1771 C 594 0.00 1392 reject_low 232 ALIGNMENT 0 Y12-4j08.q1k chr14 845 252 1755 1754 C 594 0.00 1392 reject_low 110 ALIGNMENT 0 Y12-4j08.q1k chr12 216 845 1076689 1076688 F 630 0.00 1392 reject_low 122 ALIGNMENT 145 Y12-4j08.q1k chr12 42 251 1076444 1076653 F 210 91.90 1392 reject_low 40 ALIGNMENT 935 Y12-4j08.p1k chr07 1101 30 1085916 1086996 C 1072 96.27 1388 reject_low 6 ALIGNMENT 0 Y12-4j08.q1k chr02 845 257 1770 1769 C 589 0.00 1392 reject_low 197 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946350 946349 F 594 0.00 1392 reject_low 59 ALIGNMENT 935 Y12-4j08.p1k chr05 1101 30 571839 572919 C 1072 96.27 1388 reject_low 5 ALIGNMENT 29 Y12-4j08.q1k chr10 71 32 1669 1709 C 40 95.00 1392 reject_low 250 ALIGNMENT 0 Y12-4j08.q1k chr06 845 241 941 940 C 605 0.00 1392 reject_low 160 ALIGNMENT 921 Y12-4j08.q1k chr10 1113 33 793 1888 C 1081 95.65 1392 reject_low 12 ALIGNMENT 0 Y12-4j08.p1k chr16 137 62 944346 944345 C 76 0.00 1388 reject_low 312 ALIGNMENT 0 Y12-4j08.q1k chr09 845 180 1687 1686 C 666 0.00 1392 reject_low 45 ALIGNMENT 0 Y12-4j08.p1k chr08 267 248 558724 558719 C 20 0.00 1388 reject_low 316 ALIGNMENT 0 Y12-4j08.q1k chr07 62 186 1089006 1089005 F 125 0.00 1392 reject_low 278 ALIGNMENT 130 Y12-4j08.q1k chr05 251 42 1578 1787 C 210 89.52 1392 reject_low 57 ALIGNMENT 71 Y12-4j08.q1k chr12 79 240 1069638 1069799 F 162 83.33 1392 reject_low 185 ALIGNMENT 50 Y12-4j08.p1k chr12 1019 1101 9551 9637 F 83 87.95 1388 reject_low 309,311 ALIGNMENT 935 Y12-4j08.p1k chr14 30 1101 3972 5052 F 1072 96.27 1388 reject_low 7 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946422 946421 F 594 0.00 1392 reject_low 53 ALIGNMENT 906 Y12-4j08.q1k chr14 1113 42 698 1783 C 1072 95.43 1392 reject_low 25 ALIGNMENT 119 Y12-4j08.q1k chr08 42 248 560524 560730 F 207 87.92 1392 reject_low 82 ALIGNMENT 0 Y12-4j08.p1k chr06 248 267 2948 2943 F 20 0.00 1388 reject_low 310 ALIGNMENT 0 Y12-4j08.q1k chr02 845 252 1631 1630 C 594 0.00 1392 reject_low 64 ALIGNMENT 52 Y12-4j08.p1k chr08 138 193 3564 3619 F 56 98.21 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.q1k chr13 172 62 2070 2069 C 111 0.00 1392 reject_low 261 ALIGNMENT 983 Y12-4j08.p1k chr09 21 1101 4349 5441 F 1081 97.59 1388 reject_low 1 ALIGNMENT 0 Y12-4j08.q1k chr13 845 216 1668 1667 C 630 0.00 1392 reject_low 123 ALIGNMENT 0 Y12-4j08.q1k chr15 62 107 1089258 1089257 F 46 0.00 1392 reject_low 229 ALIGNMENT 33 Y12-4j08.q1k chr10 252 64 2172 2360 C 189 74.60 1392 reject_low 277 ALIGNMENT 915 Y12-4j08.q1k chr04 42 1113 1530279 1531364 F 1072 95.71 1392 reject_low 14 ALIGNMENT 26 Y12-4j08.q1k chr06 107 42 893 958 C 66 81.82 1392 reject_low 284 ALIGNMENT 0 Y12-4j08.q1k chr13 845 108 1668 1667 C 738 0.00 1392 reject_low 206 ALIGNMENT 51 Y12-4j08.q1k chr16 251 142 1771 1880 C 110 84.55 1392 reject_low 232 ALIGNMENT 0 Y12-4j08.q1k chr04 249 845 1530341 1530340 F 597 0.00 1392 reject_low 161 ALIGNMENT 0 Y12-4j08.q1k chr08 845 144 1652 1651 C 702 0.00 1392 reject_low 132 ALIGNMENT 104 Y12-4j08.q1k chr12 42 248 1069709 1069915 F 207 85.51 1392 reject_low 102 ALIGNMENT 0 Y12-4j08.q1k chr12 249 845 1069915 1069914 F 597 0.00 1392 reject_low 102 ALIGNMENT 0 Y12-4j08.p1k chr12 298 359 3937 3952 F 62 0.00 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308 ALIGNMENT 43 Y12-4j08.q1k chr08 240 137 1806 1909 C 104 82.69 1392 reject_low 258 ALIGNMENT 0 Y12-4j08.q1k chr08 252 845 560769 560768 F 594 0.00 1392 reject_low 48 ALIGNMENT 0 Y12-4j08.q1k chr15 180 845 1089653 1089652 F 666 0.00 1392 reject_low 174 ALIGNMENT 0 Y12-4j08.q1k chr02 845 216 1487 1486 C 630 0.00 1392 reject_low 135 ALIGNMENT 0 Y12-4j08.p1k chr06 298 359 2974 2989 F 62 0.00 1388 reject_low 310 ALIGNMENT 0 Y12-4j08.q1k chr05 241 845 575090 575089 F 605 0.00 1392 reject_low 138 ALIGNMENT 80 Y12-4j08.q1k chr12 42 248 1076336 1076542 F 207 81.64 1392 reject_low 163 ALIGNMENT 0 Y12-4j08.q1k chr02 845 249 1706 1705 C 597 0.00 1392 reject_low 178 ALIGNMENT 0 Y12-4j08.q1k chr15 252 845 1089473 1089472 F 594 0.00 1392 reject_low 137 ALIGNMENT 110 Y12-4j08.q1k chr10 251 32 1849 2069 C 220 85.91 1392 reject_low 86 ALIGNMENT 0 Y12-4j08.q1k chr12 845 253 7578 7577 C 593 0.00 1392 reject_low 305 ALIGNMENT 113 Y12-4j08.q1k chr15 32 251 1089361 1089581 F 220 86.36 1392 reject_low 79 ALIGNMENT 0 Y12-4j08.q1k chr16 845 108 1484 1483 C 738 0.00 1392 reject_low 209 ALIGNMENT 119 Y12-4j08.q1k chr09 256 57 1897 2096 C 200 88.50 1392 reject_low 54 ALIGNMENT 0 Y12-4j08.p1k chr05 64 63 4070 4088 F 0 0.00 1388 reject_low 10 ALIGNMENT 95 Y12-4j08.q1k chr13 251 32 1847 2067 C 220 83.64 1392 reject_low 109 ALIGNMENT 101 Y12-4j08.q1k chr10 251 41 2029 2239 C 211 84.83 1392 reject_low 105 ALIGNMENT 0 Y12-4j08.q1k chr05 252 845 575245 575244 F 594 0.00 1392 reject_low 73 ALIGNMENT 145 Y12-4j08.q1k chr14 251 42 1610 1819 C 210 91.90 1392 reject_low 42 ALIGNMENT 59 Y12-4j08.q1k chr12 35 143 1076580 1076689 F 109 87.16 1392 reject_low 192 ALIGNMENT 0 Y12-4j08.q1k chr13 845 252 1704 1703 C 594 0.00 1392 reject_low 41 ALIGNMENT 0 Y12-4j08.q1k chr08 845 241 1843 1842 C 605 0.00 1392 reject_low 264 ALIGNMENT 0 Y12-4j08.q1k chr07 252 845 1089322 1089321 F 594 0.00 1392 reject_low 74 ALIGNMENT 0 Y12-4j08.q1k chr12 62 186 1069638 1069637 F 125 0.00 1392 reject_low 279 ALIGNMENT 100 Y12-4j08.q1k chr05 251 42 1686 1895 C 210 84.76 1392 reject_low 112 ALIGNMENT 83 Y12-4j08.q1k chr05 42 248 574964 575170 F 207 82.13 1392 reject_low 150 ALIGNMENT 24 Y12-4j08.p1k chr08 297 268 558694 558723 C 30 93.33 1388 reject_low 316 ALIGNMENT 83 Y12-4j08.q1k chr14 248 42 1721 1927 C 207 82.13 1392 reject_low 154 ALIGNMENT 0 Y12-4j08.q1k chr06 845 241 977 976 C 605 0.00 1392 reject_low 218 ALIGNMENT 0 Y12-4j08.q1k chr02 845 108 1487 1486 C 738 0.00 1392 reject_low 198 ALIGNMENT 0 Y12-4j08.q1k chr13 845 241 2003 2002 C 605 0.00 1392 reject_low 261 ALIGNMENT 51 Y12-4j08.q1k chr13 107 32 1667 1743 C 76 92.11 1392 reject_low 206 ALIGNMENT 128 Y12-4j08.q1k chr02 248 42 1597 1803 C 207 89.37 1392 reject_low 63 ALIGNMENT 0 Y12-4j08.q1k chr14 845 108 1575 1574 C 738 0.00 1392 reject_low 207 ALIGNMENT 134 Y12-4j08.q1k chr10 256 32 1880 2105 C 225 88.89 1392 reject_low 31 ALIGNMENT 0 Y12-4j08.q1k chr08 845 108 1652 1651 C 738 0.00 1392 reject_low 179 ALIGNMENT 0 Y12-4j08.q1k chr08 216 845 560841 560840 F 630 0.00 1392 reject_low 120 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 1795 1794 C 594 0.00 1392 reject_low 65 ALIGNMENT 0 Y12-4j08.q1k chr13 845 252 1848 1847 C 594 0.00 1392 reject_low 109 ALIGNMENT 0 Y12-4j08.p1k chr13 298 359 3813 3828 F 62 0.00 1388 reject_low 313 ALIGNMENT 0 Y12-4j08.q1k chr12 249 845 1076542 1076541 F 597 0.00 1392 reject_low 163 ALIGNMENT 0 Y12-4j08.q1k chr12 845 249 7474 7473 C 597 0.00 1392 reject_low 304 ALIGNMENT 0 Y12-4j08.q1k chr07 241 845 1089167 1089166 F 605 0.00 1392 reject_low 180 ALIGNMENT 113 Y12-4j08.q1k chr14 251 32 1646 1866 C 220 86.36 1392 reject_low 78 ALIGNMENT 106 Y12-4j08.q1k chr16 32 179 946346 946494 F 148 93.24 1392 reject_low 84 ALIGNMENT 0 Y12-4j08.q1k chr02 845 252 1559 1558 C 594 0.00 1392 reject_low 70 ALIGNMENT 0 Y12-4j08.q1k chr08 249 845 560730 560729 F 597 0.00 1392 reject_low 82 ALIGNMENT 90 Y12-4j08.q1k chr16 43 240 945962 946159 F 198 83.84 1392 reject_low 142 ALIGNMENT 95 Y12-4j08.q1k chr14 251 32 1754 1974 C 220 83.64 1392 reject_low 110 ALIGNMENT 82 Y12-4j08.q1k chr10 143 32 1669 1781 C 112 93.75 1392 reject_low 130 ALIGNMENT 88 Y12-4j08.q1k chr08 215 42 1651 1824 C 174 85.63 1392 reject_low 144 ALIGNMENT 82 Y12-4j08.q1k chr06 240 45 940 1135 C 196 82.65 1392 reject_low 160 ALIGNMENT 0 Y12-4j08.q1k chr04 253 845 1530237 1530236 F 593 0.00 1392 reject_low 217 ALIGNMENT 29 Y12-4j08.p1k chr16 247 215 944267 944299 C 33 96.97 1388 reject_low 312 ALIGNMENT 0 Y12-4j08.p1k chr02 62 137 4033 4032 F 76 0.00 1388 reject_low 314 ALIGNMENT 51 Y12-4j08.q1k chr04 32 107 1530412 1530488 F 76 92.11 1392 reject_low 199 ALIGNMENT 0 Y12-4j08.q1k chr15 108 845 1089653 1089652 F 738 0.00 1392 reject_low 208 ALIGNMENT 29 Y12-4j08.p1k chr05 549 583 4555 4589 F 35 94.29 1388 reject_low 10 ALIGNMENT 83 Y12-4j08.q1k chr12 248 42 1938 2144 C 207 82.13 1392 reject_low 152 ALIGNMENT 0 Y12-4j08.q1k chr12 186 62 7751 7750 C 125 0.00 1392 reject_low 308 ALIGNMENT 27 Y12-4j08.q1k chr15 216 252 1089258 1089294 F 37 91.89 1392 reject_low 281 ALIGNMENT 71 Y12-4j08.q1k chr12 35 179 1076544 1076689 F 145 85.52 1392 reject_low 171 ALIGNMENT 0 Y12-4j08.q1k chr13 845 253 2027 2026 C 593 0.00 1392 reject_low 273 ALIGNMENT 87 Y12-4j08.q1k chr04 43 240 1530064 1530261 F 198 83.33 1392 reject_low 146 ALIGNMENT 95 Y12-4j08.q1k chr05 32 251 574917 575137 F 220 83.64 1392 reject_low 107 ALIGNMENT 52 Y12-4j08.p1k chr12 138 193 3832 3887 F 56 98.21 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308,311 ALIGNMENT 0 Y12-4j08.q1k chr16 845 241 1819 1818 C 605 0.00 1392 reject_low 266 ALIGNMENT 0 Y12-4j08.q1k chr14 845 249 1722 1721 C 597 0.00 1392 reject_low 154 ALIGNMENT 0 Y12-4j08.q1k chr16 62 186 945962 945961 F 125 0.00 1392 reject_low 275 ALIGNMENT 0 Y12-4j08.p1k chr12 194 214 3888 3877 F 21 0.00 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308,311 ALIGNMENT 0 Y12-4j08.p1k chr02 194 214 4089 4078 F 21 0.00 1388 reject_low 314 ALIGNMENT 33 Y12-4j08.q1k chr13 252 187 2026 2091 C 66 84.85 1392 reject_low 273 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 2102 2101 C 594 0.00 1392 reject_low 222 ALIGNMENT 0 Y12-4j08.q1k chr12 845 253 2151 2150 C 593 0.00 1392 reject_low 296 ALIGNMENT 0 Y12-4j08.q1k chr08 252 845 560661 560660 F 594 0.00 1392 reject_low 87 ALIGNMENT 90 Y12-4j08.q1k chr14 240 43 1801 1998 C 198 83.84 1392 reject_low 141 ALIGNMENT 0 Y12-4j08.q1k chr08 144 845 560841 560840 F 702 0.00 1392 reject_low 191 ALIGNMENT 43 Y12-4j08.q1k chr04 173 240 1530086 1530153 F 68 89.71 1392 reject_low 259 ALIGNMENT 0 Y12-4j08.q1k chr04 252 845 1530452 1530451 F 594 0.00 1392 reject_low 36 ALIGNMENT 0 Y12-4j08.q1k chr16 141 62 1881 1880 C 80 0.00 1392 reject_low 232 ALIGNMENT 0 Y12-4j08.q1k chr12 845 108 1684 1683 C 738 0.00 1392 reject_low 183 ALIGNMENT 0 Y12-4j08.q1k chr16 253 845 946135 946134 F 593 0.00 1392 reject_low 213 ALIGNMENT 0 Y12-4j08.q1k chr12 845 216 1684 1683 C 630 0.00 1392 reject_low 92 ALIGNMENT 51 Y12-4j08.q1k chr14 107 32 1574 1650 C 76 92.11 1392 reject_low 207 ALIGNMENT 0 Y12-4j08.q1k chr10 845 144 1670 1669 C 702 0.00 1392 reject_low 130 ALIGNMENT 34 Y12-4j08.q1k chr07 187 240 1089006 1089059 F 54 88.89 1392 reject_low 278 ALIGNMENT 0 Y12-4j08.q1k chr12 78 72 2216 7325 C 7 0.00 1392 reject_low 292 ALIGNMENT 882 Y12-4j08.q1k chr08 1113 42 775 1860 C 1072 94.68 1392 reject_low 26 ALIGNMENT 51 Y12-4j08.q1k chr02 107 32 1486 1562 C 76 92.11 1392 reject_low 198 ALIGNMENT 0 Y12-4j08.q1k chr13 845 253 1919 1918 C 593 0.00 1392 reject_low 211 ALIGNMENT 0 Y12-4j08.q1k chr12 249 845 1076578 1076577 F 597 0.00 1392 reject_low 103 ALIGNMENT 0 Y12-4j08.q1k chr05 845 216 1471 1470 C 630 0.00 1392 reject_low 81 ALIGNMENT 0 Y12-4j08.q1k chr08 62 78 560417 560416 F 17 0.00 1392 reject_low 215 ALIGNMENT 913 Y12-4j08.q1k chr12 1113 35 807 1900 C 1079 95.46 1392 reject_low 24 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 1756 1755 C 594 0.00 1392 reject_low 55 ALIGNMENT 0 Y12-4j08.p1k chr08 248 267 3643 3638 F 20 0.00 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.p1k chr12 194 214 9423 9412 F 21 0.00 1388 reject_low 309 ALIGNMENT 59 Y12-4j08.q1k chr15 35 143 1089544 1089653 F 109 87.16 1392 reject_low 195 ALIGNMENT 137 Y12-4j08.q1k chr05 251 32 1506 1726 C 220 90.00 1392 reject_low 35 ALIGNMENT 61 Y12-4j08.q1k chr02 251 114 1738 1875 C 138 83.33 1392 reject_low 219 ALIGNMENT 0 Y12-4j08.q1k chr16 845 252 1556 1555 C 594 0.00 1392 reject_low 80 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 2066 2065 C 594 0.00 1392 reject_low 181 ALIGNMENT 45 Y12-4j08.q1k chr09 240 168 2021 2093 C 73 89.04 1392 reject_low 257 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 1759 1758 C 594 0.00 1392 reject_low 51 ALIGNMENT 0 Y12-4j08.q1k chr12 249 845 1069879 1069878 F 597 0.00 1392 reject_low 162 ALIGNMENT 0 Y12-4j08.q1k chr14 845 241 1910 1909 C 605 0.00 1392 reject_low 262 ALIGNMENT 127 Y12-4j08.q1k chr10 251 42 1777 1986 C 210 89.05 1392 reject_low 66 ALIGNMENT 0 Y12-4j08.q1k chr09 845 216 1687 1686 C 630 0.00 1392 reject_low 32 ALIGNMENT 0 Y12-4j08.q1k chr14 845 252 1611 1610 C 594 0.00 1392 reject_low 42 ALIGNMENT 55 Y12-4j08.q1k chr12 251 137 7614 7728 C 115 85.22 1392 reject_low 306 ALIGNMENT 0 Y12-4j08.q1k chr05 62 136 574915 574914 F 75 0.00 1392 reject_low 224 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1687 1686 C 594 0.00 1392 reject_low 112 ALIGNMENT 925 Y12-4j08.q1k chr05 1102 32 607 1690 C 1071 95.99 1392 reject_low 13 ALIGNMENT 0 Y12-4j08.q1k chr05 98 62 2055 2054 C 37 0.00 1392 reject_low 282 ALIGNMENT 0 Y12-4j08.q1k chr12 241 845 1076462 1076461 F 605 0.00 1392 reject_low 147 ALIGNMENT 142 Y12-4j08.q1k chr10 215 32 1669 1853 C 184 95.11 1392 reject_low 33 ALIGNMENT 54 Y12-4j08.q1k chr05 107 32 1470 1546 C 76 93.42 1392 reject_low 182 ALIGNMENT 0 Y12-4j08.q1k chr16 213 62 1881 1880 C 152 0.00 1392 reject_low 280 ALIGNMENT 0 Y12-4j08.p1k chr12 298 359 3937 9487 F 62 0.00 1388 reject_low 311 ALIGNMENT 0 Y12-4j08.q1k chr07 62 78 1089006 1089005 F 17 0.00 1392 reject_low 180 ALIGNMENT 130 Y12-4j08.q1k chr10 179 32 1669 1817 C 148 98.65 1392 reject_low 46 ALIGNMENT 0 Y12-4j08.q1k chr05 72 845 575317 575316 F 774 0.00 1392 reject_low 246 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 1723 1722 C 594 0.00 1392 reject_low 49 ALIGNMENT 107 Y12-4j08.q1k chr16 248 42 1594 1800 C 207 85.99 1392 reject_low 100 ALIGNMENT 24 Y12-4j08.p1k chr12 268 297 9442 9471 F 30 93.33 1388 reject_low 309 ALIGNMENT 24 Y12-4j08.p1k chr12 268 297 3907 3936 F 30 93.33 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308,311 ALIGNMENT 0 Y12-4j08.q1k chr08 241 845 560506 560505 F 605 0.00 1392 reject_low 269 ALIGNMENT 0 Y12-4j08.q1k chr14 78 62 1999 1998 C 17 0.00 1392 reject_low 212 ALIGNMENT 0 Y12-4j08.q1k chr12 845 249 1939 1938 C 597 0.00 1392 reject_low 152 ALIGNMENT 128 Y12-4j08.q1k chr10 251 32 1741 1961 C 220 88.64 1392 reject_low 52 ALIGNMENT 47 Y12-4j08.q1k chr07 151 251 1089006 1089106 F 101 84.16 1392 reject_low 243 ALIGNMENT 98 Y12-4j08.q1k chr08 42 248 560488 560694 F 207 84.54 1392 reject_low 127 ALIGNMENT 55 Y12-4j08.q1k chr06 251 42 1001 1210 C 210 77.62 1392 reject_low 221 ALIGNMENT 0 Y12-4j08.q1k chr07 216 845 1089394 1089393 F 630 0.00 1392 reject_low 119 ALIGNMENT 0 Y12-4j08.q1k chr12 845 253 2043 2042 C 593 0.00 1392 reject_low 292 ALIGNMENT 70 Y12-4j08.q1k chr12 143 32 1683 1795 C 112 90.18 1392 reject_low 157 ALIGNMENT 88 Y12-4j08.q1k chr09 240 93 1949 2096 C 148 88.51 1392 reject_low 149 ALIGNMENT 29 Y12-4j08.q1k chr13 71 32 1667 1707 C 40 95.00 1392 reject_low 252 ALIGNMENT 0 Y12-4j08.q1k chr04 253 845 1530129 1530128 F 593 0.00 1392 reject_low 271 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1076509 1076508 F 594 0.00 1392 reject_low 116 ALIGNMENT 113 Y12-4j08.q1k chr16 251 32 1555 1775 C 220 86.36 1392 reject_low 80 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 7615 7614 C 594 0.00 1392 reject_low 306 ALIGNMENT 90 Y12-4j08.q1k chr13 240 43 1894 2091 C 198 83.84 1392 reject_low 140 ALIGNMENT 0 Y12-4j08.q1k chr12 845 241 2019 2018 C 605 0.00 1392 reject_low 139 ALIGNMENT 59 Y12-4j08.q1k chr02 143 35 1486 1595 C 109 87.16 1392 reject_low 187 ALIGNMENT 0 Y12-4j08.q1k chr13 136 62 2070 2069 C 75 0.00 1392 reject_low 225 ALIGNMENT 53 Y12-4j08.p1k chr06 360 416 2990 3046 F 57 98.25 1388 reject_low 310 ALIGNMENT 52 Y12-4j08.p1k chr08 193 138 558743 558798 C 56 98.21 1388 reject_low 316 ALIGNMENT 44 Y12-4j08.q1k chr12 151 251 1069638 1069738 F 101 83.17 1392 reject_low 256 ALIGNMENT 0 Y12-4j08.q1k chr10 845 241 2005 2004 C 605 0.00 1392 reject_low 94 ALIGNMENT 0 Y12-4j08.q1k chr16 845 252 1520 1519 C 594 0.00 1392 reject_low 44 ALIGNMENT 125 Y12-4j08.q1k chr12 251 32 1755 1975 C 220 88.18 1392 reject_low 55 ALIGNMENT 40 Y12-4j08.q1k chr08 240 173 1842 1909 C 68 88.24 1392 reject_low 264 ALIGNMENT 47 Y12-4j08.p1k chr08 1101 1019 558528 558614 C 83 86.75 1388 reject_low 316 ALIGNMENT 37 Y12-4j08.q1k chr15 180 240 1089258 1089318 F 61 88.52 1392 reject_low 268 ALIGNMENT 64 Y12-4j08.q1k chr14 252 79 1825 1998 C 174 81.03 1392 reject_low 212 ALIGNMENT 88 Y12-4j08.q1k chr05 251 45 1758 1964 C 207 83.09 1392 reject_low 143 ALIGNMENT 0 Y12-4j08.q1k chr08 252 845 560805 560804 F 594 0.00 1392 reject_low 30 ALIGNMENT 92 Y12-4j08.q1k chr04 32 251 1530088 1530308 F 220 83.18 1392 reject_low 114 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1076401 1076400 F 594 0.00 1392 reject_low 289 ALIGNMENT 386 Y12-4j08.p1k chr05 640 1101 4586 5056 F 462 95.45 1388 reject_low 10 ALIGNMENT 0 Y12-4j08.q1k chr14 845 253 1826 1825 C 593 0.00 1392 reject_low 212 ALIGNMENT 0 Y12-4j08.q1k chr08 196 62 1922 1921 C 135 0.00 1392 reject_low 276 ALIGNMENT 0 Y12-4j08.q1k chr08 108 845 560841 560840 F 738 0.00 1392 reject_low 202 ALIGNMENT 0 Y12-4j08.q1k chr12 216 845 1070026 1070025 F 630 0.00 1392 reject_low 121 ALIGNMENT 0 Y12-4j08.q1k chr09 845 241 1950 1949 C 605 0.00 1392 reject_low 149 ALIGNMENT 0 Y12-4j08.q1k chr08 845 252 1724 1723 C 594 0.00 1392 reject_low 176 ALIGNMENT 0 Y12-4j08.p1k chr16 359 298 944225 944240 C 62 0.00 1388 reject_low 312 ALIGNMENT 0 Y12-4j08.q1k chr02 149 62 1876 1875 C 88 0.00 1392 reject_low 197 ALIGNMENT 0 Y12-4j08.q1k chr07 144 845 1089394 1089393 F 702 0.00 1392 reject_low 190 ALIGNMENT 0 Y12-4j08.q1k chr04 62 172 1530086 1530085 F 111 0.00 1392 reject_low 259 ALIGNMENT 0 Y12-4j08.q1k chr08 72 845 560841 560840 F 774 0.00 1392 reject_low 248 ALIGNMENT 51 Y12-4j08.q1k chr12 32 107 1069950 1070026 F 76 92.11 1392 reject_low 294 ALIGNMENT 0 Y12-4j08.q1k chr12 136 62 7729 7728 C 75 0.00 1392 reject_low 306 ALIGNMENT 104 Y12-4j08.q1k chr12 42 248 1076372 1076578 F 207 85.51 1392 reject_low 103 ALIGNMENT 71 Y12-4j08.q1k chr13 179 35 1667 1812 C 145 85.52 1392 reject_low 172 ALIGNMENT 50 Y12-4j08.p1k chr13 1019 1101 3892 3978 F 83 87.95 1388 reject_low 313 ALIGNMENT 30 Y12-4j08.q1k chr05 252 99 1901 2054 C 154 75.32 1392 reject_low 282 ALIGNMENT 492 Y12-4j08.p1k chr12 533 30 1067125 1067628 C 504 99.40 1388 reject_low 9 ALIGNMENT 53 Y12-4j08.p1k chr02 360 416 4154 4210 F 57 98.25 1388 reject_low 314 ALIGNMENT 29 Y12-4j08.q1k chr02 71 32 1486 1526 C 40 95.00 1392 reject_low 244 ALIGNMENT 0 Y12-4j08.q1k chr05 249 845 575170 575169 F 597 0.00 1392 reject_low 150 ALIGNMENT 0 Y12-4j08.q1k chr12 180 845 1076689 1076688 F 666 0.00 1392 reject_low 171 ALIGNMENT 142 Y12-4j08.q1k chr09 215 32 1686 1870 C 184 95.11 1392 reject_low 32 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1615 1614 C 594 0.00 1392 reject_low 47 ALIGNMENT 0 Y12-4j08.q1k chr16 845 144 1484 1483 C 702 0.00 1392 reject_low 196 ALIGNMENT 0 Y12-4j08.q1k chr07 252 845 1089214 1089213 F 594 0.00 1392 reject_low 136 ALIGNMENT 0 Y12-4j08.q1k chr02 845 241 1678 1677 C 605 0.00 1392 reject_low 113 ALIGNMENT 29 Y12-4j08.q1k chr05 32 71 575277 575317 F 40 95.00 1392 reject_low 246 ALIGNMENT 78 Y12-4j08.q1k chr15 72 240 1089258 1089426 F 169 84.02 1392 reject_low 177 ALIGNMENT 0 Y12-4j08.q1k chr07 252 845 1089106 1089105 F 594 0.00 1392 reject_low 243 ALIGNMENT 0 Y12-4j08.p1k chr06 62 137 2869 2868 F 76 0.00 1388 reject_low 310 ALIGNMENT 70 Y12-4j08.q1k chr16 32 143 946382 946494 F 112 90.18 1392 reject_low 158 ALIGNMENT 100 Y12-4j08.q1k chr02 240 42 1677 1875 C 199 85.43 1392 reject_low 113 ALIGNMENT 123 Y12-4j08.q1k chr16 35 251 946241 946458 F 217 88.02 1392 reject_low 61 ALIGNMENT 67 Y12-4j08.q1k chr05 143 32 1470 1582 C 112 89.29 1392 reject_low 166 ALIGNMENT 59 Y12-4j08.q1k chr14 143 35 1574 1683 C 109 87.16 1392 reject_low 194 ALIGNMENT 91 Y12-4j08.q1k chr04 32 215 1530304 1530488 F 184 85.87 1392 reject_low 117 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1723 1722 C 594 0.00 1392 reject_low 106 ALIGNMENT 52 Y12-4j08.q1k chr15 108 252 1089258 1089402 F 145 80.69 1392 reject_low 229 ALIGNMENT 0 Y12-4j08.q1k chr02 845 144 1487 1486 C 702 0.00 1392 reject_low 187 ALIGNMENT 0 Y12-4j08.q1k chr12 78 62 7751 7750 C 17 0.00 1392 reject_low 305 ALIGNMENT 29 Y12-4j08.p1k chr06 215 247 2915 2947 F 33 96.97 1388 reject_low 310 ALIGNMENT 134 Y12-4j08.q1k chr05 251 32 1614 1834 C 220 89.55 1392 reject_low 47 ALIGNMENT 43 Y12-4j08.q1k chr13 240 173 2002 2069 C 68 89.71 1392 reject_low 261 ALIGNMENT 104 Y12-4j08.q1k chr10 240 32 2004 2213 C 209 85.65 1392 reject_low 94 ALIGNMENT 91 Y12-4j08.q1k chr12 32 215 1076505 1076689 F 184 85.87 1392 reject_low 122 ALIGNMENT 52 Y12-4j08.q1k chr07 115 252 1089006 1089143 F 138 81.16 1392 reject_low 230 ALIGNMENT 0 Y12-4j08.q1k chr02 845 72 1487 1486 C 774 0.00 1392 reject_low 244 ALIGNMENT 0 Y12-4j08.q1k chr05 252 845 575281 575280 F 594 0.00 1392 reject_low 37 ALIGNMENT 0 Y12-4j08.q1k chr06 845 216 894 893 C 630 0.00 1392 reject_low 216 ALIGNMENT 29 Y12-4j08.q1k chr09 71 32 1686 1726 C 40 95.00 1392 reject_low 249 ALIGNMENT 29 Y12-4j08.q1k chr12 71 32 7326 7366 C 40 95.00 1392 reject_low 292,296 ALIGNMENT 0 Y12-4j08.q1k chr07 62 222 1089006 1089005 F 161 0.00 1392 reject_low 286 ALIGNMENT 55 Y12-4j08.q1k chr16 137 251 945984 946098 F 115 85.22 1392 reject_low 227 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1579 1578 C 594 0.00 1392 reject_low 57 ALIGNMENT 83 Y12-4j08.q1k chr07 42 248 1089041 1089247 F 207 82.13 1392 reject_low 151 ALIGNMENT 91 Y12-4j08.q1k chr13 215 32 1667 1851 C 184 85.87 1392 reject_low 123 ALIGNMENT 0 Y12-4j08.q1k chr08 845 241 1807 1806 C 605 0.00 1392 reject_low 258 ALIGNMENT 29 Y12-4j08.p1k chr12 583 549 1067094 1067128 C 35 94.29 1388 reject_low 9 ALIGNMENT 0 Y12-4j08.q1k chr14 845 241 1802 1801 C 605 0.00 1392 reject_low 141 ALIGNMENT 57 Y12-4j08.q1k chr08 107 32 1651 1727 C 76 94.74 1392 reject_low 179 ALIGNMENT 0 Y12-4j08.q1k chr14 845 216 1575 1574 C 630 0.00 1392 reject_low 124 ALIGNMENT 51 Y12-4j08.q1k chr15 32 107 1089577 1089653 F 76 92.11 1392 reject_low 208 ALIGNMENT 83 Y12-4j08.q1k chr13 248 42 1814 2020 C 207 82.13 1392 reject_low 153 ALIGNMENT 57 Y12-4j08.q1k chr16 252 106 1734 1880 C 147 81.63 1392 reject_low 220 ALIGNMENT 0 Y12-4j08.q1k chr05 62 186 574893 574892 F 125 0.00 1392 reject_low 272 ALIGNMENT 112 Y12-4j08.q1k chr05 251 42 1650 1859 C 210 86.67 1392 reject_low 90 ALIGNMENT 90 Y12-4j08.q1k chr08 179 42 1651 1788 C 138 90.58 1392 reject_low 134 ALIGNMENT 52 Y12-4j08.q1k chr12 137 251 1076287 1076401 F 115 84.35 1392|4,0 reject_low 289 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 1831 1830 C 594 0.00 1392 reject_low 88 ALIGNMENT 28 Y12-4j08.q1k chr16 252 214 1842 1880 C 39 92.31 1392 reject_low 280 ALIGNMENT 0 Y12-4j08.q1k chr16 845 253 1843 1842 C 593 0.00 1392 reject_low 280 ALIGNMENT 461 Y12-4j08.p1k chr05 64 533 4089 4558 F 470 99.57 1388 reject_low 10 ALIGNMENT 80 Y12-4j08.q1k chr12 42 248 1069673 1069879 F 207 81.64 1392 reject_low 162 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 1958 1957 C 594 0.00 1392 reject_low 58 ALIGNMENT 112 Y12-4j08.q1k chr16 42 215 946321 946494 F 174 90.23 1392 reject_low 93 ALIGNMENT 29 Y12-4j08.p1k chr08 247 215 558720 558752 C 33 96.97 1388 reject_low 316 ALIGNMENT 59 Y12-4j08.q1k chr05 35 143 575208 575317 F 109 87.16 1392 reject_low 189 ALIGNMENT 0 Y12-4j08.q1k chr08 172 62 1910 1909 C 111 0.00 1392 reject_low 264 ALIGNMENT 38 Y12-4j08.q1k chr02 240 186 1821 1875 C 55 90.91 1392 reject_low 267 ALIGNMENT 67 Y12-4j08.q1k chr05 251 42 1830 2039 C 210 79.52 1392 reject_low 186 ALIGNMENT 51 Y12-4j08.q1k chr16 107 32 1483 1559 C 76 92.11 1392 reject_low 209 ALIGNMENT 0 Y12-4j08.q1k chr08 845 252 1688 1687 C 594 0.00 1392 reject_low 115 ALIGNMENT 64 Y12-4j08.q1k chr12 252 79 7577 7750 C 174 81.03 1392 reject_low 305 ALIGNMENT 0 Y12-4j08.q1k chr07 108 845 1089394 1089393 F 738 0.00 1392 reject_low 201 ALIGNMENT 0 Y12-4j08.q1k chr12 845 180 1684 1683 C 666 0.00 1392 reject_low 83 ALIGNMENT 0 Y12-4j08.q1k chr10 845 108 1670 1669 C 738 0.00 1392 reject_low 204 ALIGNMENT 33 Y12-4j08.q1k chr12 252 187 7685 7750 C 66 84.85 1392 reject_low 308 ALIGNMENT 51 Y12-4j08.q1k chr05 32 107 575241 575317 F 76 92.11 1392 reject_low 200 ALIGNMENT 0 Y12-4j08.q1k chr02 845 252 1739 1738 C 594 0.00 1392 reject_low 219 ALIGNMENT 0 Y12-4j08.q1k chr04 180 845 1530488 1530487 F 666 0.00 1392 reject_low 167 ALIGNMENT 59 Y12-4j08.q1k chr12 143 35 7326 7435 C 109 87.16 1392|3,0 reject_low 288 ALIGNMENT 107 Y12-4j08.q1k chr10 251 32 1813 2033 C 220 85.45 1392 reject_low 89 ALIGNMENT 104 Y12-4j08.q1k chr15 42 248 1089336 1089542 F 207 85.51 1392 reject_low 104 ALIGNMENT 139 Y12-4j08.q1k chr10 251 42 1705 1914 C 210 90.95 1392 reject_low 50 ALIGNMENT 92 Y12-4j08.q1k chr12 32 251 1076289 1076509 F 220 83.18 1392 reject_low 116 ALIGNMENT 0 Y12-4j08.p1k chr12 62 137 3832 3831 F 76 0.00 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308,311 ALIGNMENT 0 Y12-4j08.q1k chr12 845 241 7554 7553 C 605 0.00 1392 reject_low 303 ALIGNMENT 0 Y12-4j08.q1k chr12 108 172 1070027 1076286 F 65 0.00 1392 reject_low 294 ALIGNMENT 110 Y12-4j08.q1k chr09 251 32 1866 2086 C 220 85.91 1392 reject_low 85 ALIGNMENT 0 Y12-4j08.q1k chr10 845 253 2173 2172 C 593 0.00 1392 reject_low 277 ALIGNMENT 919 Y12-4j08.q1k chr16 32 1113 946274 947370 F 1082 95.56 1392 reject_low 17 ALIGNMENT 33 Y12-4j08.q1k chr05 187 252 574893 574958 F 66 84.85 1392 reject_low 272 ALIGNMENT 107 Y12-4j08.q1k chr07 42 248 1089077 1089283 F 207 85.99 1392 reject_low 97 ALIGNMENT 47 Y12-4j08.p1k chr08 1019 1101 3748 3834 F 83 86.75 1388 reject_low 315 ALIGNMENT 38 Y12-4j08.q1k chr16 240 178 1818 1880 C 63 88.89 1392 reject_low 266 ALIGNMENT 49 Y12-4j08.p1k chr13 138 193 3708 3763 F 56 96.43 1388 reject_low 313 ALIGNMENT 0 Y12-4j08.q1k chr05 845 241 1878 1877 C 605 0.00 1392 reject_low 239 ALIGNMENT 386 Y12-4j08.p1k chr12 1101 640 1066627 1067097 C 462 95.45 1388 reject_low 9 ALIGNMENT 163 Y12-4j08.q1k chr05 251 33 1542 1761 C 219 94.06 1392 reject_low 29 ALIGNMENT 55 Y12-4j08.q1k chr12 251 137 2079 2193 C 115 85.22 1392|0,4 reject_low 288 ALIGNMENT 93 Y12-4j08.q1k chr16 251 35 1663 1880 C 217 83.41 1392 reject_low 128 ALIGNMENT 0 Y12-4j08.q1k chr12 177 176 1070024 1076290 F 0 0.00 1392 reject_low 291 ALIGNMENT 0 Y12-4j08.q1k chr14 845 72 1575 1574 C 774 0.00 1392 reject_low 253 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946278 946277 F 594 0.00 1392 reject_low 91 ALIGNMENT 52 Y12-4j08.p1k chr12 138 193 9367 9422 F 56 98.21 1388 reject_low 309 ALIGNMENT 0 Y12-4j08.q1k chr15 62 179 1089258 1089257 F 118 0.00 1392 reject_low 268 ALIGNMENT 35 Y12-4j08.q1k chr09 251 210 2046 2087 C 42 97.62 1392 reject_low 265 ALIGNMENT 0 Y12-4j08.p1k chr08 417 1018 3742 3747 F 602 0.00 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.q1k chr07 249 845 1089247 1089246 F 597 0.00 1392 reject_low 151 ALIGNMENT 121 Y12-4j08.q1k chr12 251 42 1791 2000 C 210 88.10 1392 reject_low 71 ALIGNMENT 0 Y12-4j08.q1k chr07 252 845 1089358 1089357 F 594 0.00 1392 reject_low 38 ALIGNMENT 113 Y12-4j08.q1k chr07 32 251 1089102 1089322 F 220 86.36 1392 reject_low 74 ALIGNMENT 0 Y12-4j08.q1k chr08 62 172 560439 560438 F 111 0.00 1392 reject_low 269 ALIGNMENT 0 Y12-4j08.q1k chr07 249 845 1089283 1089282 F 597 0.00 1392 reject_low 97 ALIGNMENT 950 Y12-4j08.p1k chr04 1101 30 1527010 1528090 C 1072 96.74 1388 reject_low 3 ALIGNMENT 145 Y12-4j08.q1k chr05 42 251 575072 575281 F 210 91.90 1392 reject_low 37 ALIGNMENT 0 Y12-4j08.q1k chr05 253 845 574958 574957 F 593 0.00 1392 reject_low 272 ALIGNMENT 0 Y12-4j08.q1k chr10 845 241 1933 1932 C 605 0.00 1392 reject_low 62 ALIGNMENT 64 Y12-4j08.q1k chr16 79 252 945962 946135 F 174 81.03 1392 reject_low 213 ALIGNMENT 0 Y12-4j08.q1k chr12 253 845 1076330 1076329 F 593 0.00 1392 reject_low 297 ALIGNMENT 52 Y12-4j08.q1k chr04 137 251 1530086 1530200 F 115 84.35 1392 reject_low 231 ALIGNMENT 130 Y12-4j08.q1k chr10 240 42 1932 2130 C 199 90.45 1392 reject_low 62 ALIGNMENT 34 Y12-4j08.q1k chr12 187 240 1069638 1069691 F 54 88.89 1392 reject_low 279 ALIGNMENT 90 Y12-4j08.q1k chr05 43 240 574893 575090 F 198 83.84 1392 reject_low 138 ALIGNMENT 0 Y12-4j08.q1k chr08 252 845 560589 560588 F 594 0.00 1392 reject_low 215 ALIGNMENT 0 Y12-4j08.q1k chr07 253 845 1089035 1089034 F 593 0.00 1392 reject_low 286 ALIGNMENT 55 Y12-4j08.q1k chr05 137 251 574915 575029 F 115 85.22 1392 reject_low 224 ALIGNMENT 0 Y12-4j08.q1k chr16 845 249 1595 1594 C 597 0.00 1392 reject_low 100 ALIGNMENT 0 Y12-4j08.p1k chr08 62 137 3564 3563 F 76 0.00 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.p1k chr12 248 267 3911 3906 F 20 0.00 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308,311 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 1867 1866 C 594 0.00 1392 reject_low 85 ALIGNMENT 0 Y12-4j08.q1k chr04 249 845 1530377 1530376 F 597 0.00 1392 reject_low 101 ALIGNMENT 0 Y12-4j08.q1k chr15 252 845 1089365 1089364 F 594 0.00 1392 reject_low 242 ALIGNMENT 0 Y12-4j08.p1k chr12 548 534 1067129 1067124 C 15 0.00 1388 reject_low 9 ALIGNMENT 0 Y12-4j08.q1k chr04 241 845 1530153 1530152 F 605 0.00 1392 reject_low 259 ALIGNMENT 0 Y12-4j08.q1k chr12 845 72 1684 1683 C 774 0.00 1392 reject_low 236 ALIGNMENT 0 Y12-4j08.q1k chr12 72 78 1070027 1076264 F 7 0.00 1392 reject_low 295 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 1972 1971 C 594 0.00 1392 reject_low 108 ALIGNMENT 83 Y12-4j08.q1k chr16 248 42 1630 1836 C 207 82.13 1392 reject_low 155 ALIGNMENT 128 Y12-4j08.q1k chr16 32 251 946202 946422 F 220 88.64 1392 reject_low 53 ALIGNMENT 0 Y12-4j08.q1k chr12 845 249 1903 1902 C 597 0.00 1392 reject_low 95 ALIGNMENT 0 Y12-4j08.q1k chr08 845 180 1652 1651 C 666 0.00 1392 reject_low 134 ALIGNMENT 0 Y12-4j08.p1k chr05 534 548 4559 4554 F 15 0.00 1388 reject_low 10 ALIGNMENT 95 Y12-4j08.q1k chr12 251 32 1971 2191 C 220 83.64 1392 reject_low 108 ALIGNMENT 0 Y12-4j08.q1k chr09 845 144 1687 1686 C 702 0.00 1392 reject_low 129 ALIGNMENT 0 Y12-4j08.p1k chr08 137 62 558799 558798 C 76 0.00 1388 reject_low 316 ALIGNMENT 0 Y12-4j08.p1k chr08 359 298 558678 558693 C 62 0.00 1388 reject_low 316 ALIGNMENT 0 Y12-4j08.q1k chr15 144 845 1089653 1089652 F 702 0.00 1392 reject_low 195 ALIGNMENT 91 Y12-4j08.q1k chr12 215 32 7326 7510 C 184 85.87 1392 reject_low 302 ALIGNMENT 113 Y12-4j08.q1k chr12 32 251 1069734 1069954 F 220 86.36 1392 reject_low 75 ALIGNMENT 29 Y12-4j08.p1k chr12 215 247 9413 9445 F 33 96.97 1388 reject_low 309 ALIGNMENT 0 Y12-4j08.q1k chr13 78 62 2092 2091 C 17 0.00 1392 reject_low 211 ALIGNMENT 128 Y12-4j08.q1k chr09 251 32 1758 1978 C 220 88.64 1392 reject_low 51 ALIGNMENT 0 Y12-4j08.p1k chr06 194 214 2925 2914 F 21 0.00 1388 reject_low 310 ALIGNMENT 0 Y12-4j08.q1k chr12 253 845 1069667 1069666 F 593 0.00 1392 reject_low 287 ALIGNMENT 0 Y12-4j08.q1k chr04 241 845 1530261 1530260 F 605 0.00 1392 reject_low 146 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 7363 7362 C 594 0.00 1392 reject_low 298 ALIGNMENT 0 Y12-4j08.q1k chr12 140 141 2190 7328 C 0 0.00 1392 reject_low 288 ALIGNMENT 24 Y12-4j08.p1k chr06 268 297 2944 2973 F 30 93.33 1388 reject_low 310 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 1742 1741 C 594 0.00 1392 reject_low 52 ALIGNMENT 0 Y12-4j08.q1k chr16 108 845 946494 946493 F 738 0.00 1392 reject_low 184 ALIGNMENT 0 Y12-4j08.q1k chr12 62 150 1069638 1069637 F 89 0.00 1392 reject_low 256 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 1720 1719 C 594 0.00 1392 reject_low 68 ALIGNMENT 71 Y12-4j08.q1k chr05 35 179 575172 575317 F 145 85.52 1392 reject_low 168 ALIGNMENT 0 Y12-4j08.q1k chr16 177 62 1881 1880 C 116 0.00 1392 reject_low 266 ALIGNMENT 85 Y12-4j08.q1k chr05 179 32 1470 1618 C 148 88.51 1392 reject_low 131 ALIGNMENT 115 Y12-4j08.q1k chr02 251 33 1558 1777 C 219 86.76 1392 reject_low 70 ALIGNMENT 140 Y12-4j08.q1k chr02 251 32 1522 1742 C 220 90.45 1392 reject_low 34 ALIGNMENT 915 Y12-4j08.q1k chr15 42 1113 1089444 1090529 F 1072 95.71 1392 reject_low 16 ALIGNMENT 52 Y12-4j08.p1k chr16 193 138 944290 944345 C 56 98.21 1388 reject_low 312 ALIGNMENT 130 Y12-4j08.q1k chr09 179 32 1686 1834 C 148 98.65 1392 reject_low 45 ALIGNMENT 51 Y12-4j08.q1k chr07 32 107 1089318 1089394 F 76 92.11 1392 reject_low 201 ALIGNMENT 125 Y12-4j08.q1k chr16 32 240 946094 946303 F 209 89.00 1392 reject_low 56 ALIGNMENT 0 Y12-4j08.q1k chr14 186 62 1999 1998 C 125 0.00 1392 reject_low 274 ALIGNMENT 139 Y12-4j08.q1k chr09 251 42 1722 1931 C 210 90.95 1392 reject_low 49 ALIGNMENT 107 Y12-4j08.q1k chr12 248 42 7437 7643 C 207 85.99 1392 reject_low 300 ALIGNMENT 0 Y12-4j08.p1k chr16 214 194 944300 944289 C 21 0.00 1388 reject_low 312 ALIGNMENT 0 Y12-4j08.q1k chr16 62 172 945984 945983 F 111 0.00 1392 reject_low 263 ALIGNMENT 0 Y12-4j08.q1k chr08 136 62 1910 1909 C 75 0.00 1392 reject_low 258 ALIGNMENT 0 Y12-4j08.q1k chr04 62 136 1530086 1530085 F 75 0.00 1392 reject_low 231 ALIGNMENT 29 Y12-4j08.q1k chr14 71 32 1574 1614 C 40 95.00 1392 reject_low 253 ALIGNMENT 54 Y12-4j08.q1k chr16 32 107 946418 946494 F 76 93.42 1392 reject_low 184 ALIGNMENT 51 Y12-4j08.q1k chr08 32 107 560765 560841 F 76 92.11 1392 reject_low 202 ALIGNMENT 0 Y12-4j08.q1k chr06 845 241 1049 1048 C 605 0.00 1392 reject_low 240 ALIGNMENT 64 Y12-4j08.q1k chr13 252 79 1918 2091 C 174 81.03 1392 reject_low 211 ALIGNMENT 120 Y12-4j08.q1k chr12 251 35 1719 1936 C 217 87.56 1392 reject_low 68 ALIGNMENT 91 Y12-4j08.q1k chr07 32 215 1089210 1089394 F 184 85.87 1392 reject_low 119 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946206 946205 F 594 0.00 1392 reject_low 111 ALIGNMENT 127 Y12-4j08.q1k chr02 251 42 1630 1839 C 210 89.05 1392 reject_low 64 ALIGNMENT 29 Y12-4j08.q1k chr16 71 32 1483 1523 C 40 95.00 1392 reject_low 255 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 1706 1705 C 594 0.00 1392 reject_low 50 ALIGNMENT 0 Y12-4j08.q1k chr13 845 252 1956 1955 C 594 0.00 1392 reject_low 225 ALIGNMENT 0 Y12-4j08.q1k chr12 845 241 1875 1874 C 605 0.00 1392 reject_low 60 ALIGNMENT 0 Y12-4j08.p1k chr12 62 137 9367 9366 F 76 0.00 1388 reject_low 309 ALIGNMENT 134 Y12-4j08.q1k chr08 32 251 560549 560769 F 220 89.55 1392 reject_low 48 ALIGNMENT 0 Y12-4j08.q1k chr05 845 108 1471 1470 C 738 0.00 1392 reject_low 182 ALIGNMENT 43 Y12-4j08.q1k chr16 173 240 945984 946051 F 68 89.71 1392 reject_low 263 ALIGNMENT 0 Y12-4j08.q1k chr04 144 845 1530488 1530487 F 702 0.00 1392 reject_low 188 ALIGNMENT 122 Y12-4j08.q1k chr12 240 32 1874 2083 C 209 88.52 1392 reject_low 60 ALIGNMENT 32 Y12-4j08.q1k chr08 252 197 1866 1921 C 56 87.50 1392 reject_low 276 ALIGNMENT 0 Y12-4j08.q1k chr14 845 144 1575 1574 C 702 0.00 1392 reject_low 194 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 1814 1813 C 594 0.00 1392 reject_low 89 ALIGNMENT 0 Y12-4j08.q1k chr07 253 845 1089143 1089142 F 593 0.00 1392 reject_low 230 ALIGNMENT 915 Y12-4j08.q1k chr12 42 1113 1069817 1070902 F 1072 95.71 1392 accept_tel 0 ALIGNMENT 91 Y12-4j08.q1k chr08 32 215 560657 560841 F 184 85.87 1392 reject_low 120 ALIGNMENT 113 Y12-4j08.q1k chr05 32 251 575025 575245 F 220 86.36 1392 reject_low 73 ALIGNMENT 0 Y12-4j08.q1k chr04 108 845 1530488 1530487 F 738 0.00 1392 reject_low 199 ALIGNMENT 0 Y12-4j08.q1k chr16 241 845 946303 946302 F 605 0.00 1392 reject_low 56 ALIGNMENT 90 Y12-4j08.q1k chr12 240 43 2018 2215 C 198 83.84 1392 reject_low 139 ALIGNMENT 92 Y12-4j08.q1k chr08 251 32 1687 1907 C 220 83.18 1392 reject_low 115 ALIGNMENT 0 Y12-4j08.q1k chr12 62 78 1069638 1069637 F 17 0.00 1392 reject_low 185 ALIGNMENT 91 Y12-4j08.q1k chr15 32 215 1089469 1089653 F 184 85.87 1392 reject_low 125 ALIGNMENT 55 Y12-4j08.q1k chr10 251 42 2101 2310 C 210 77.62 1392 reject_low 222 ALIGNMENT 0 Y12-4j08.q1k chr16 144 845 946494 946493 F 702 0.00 1392 reject_low 158 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 7399 7398 C 594 0.00 1392 reject_low 299 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 7507 7506 C 594 0.00 1392 reject_low 301 ALIGNMENT 0 Y12-4j08.q1k chr13 845 241 1895 1894 C 605 0.00 1392 reject_low 140 ALIGNMENT 89 Y12-4j08.q1k chr15 41 251 1089263 1089473 F 211 82.94 1392 reject_low 137 ALIGNMENT 32 Y12-4j08.q1k chr16 32 71 946454 946494 F 40 97.50 1392 reject_low 237 ALIGNMENT 53 Y12-4j08.p1k chr08 360 416 3685 3741 F 57 98.25 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.q1k chr05 180 845 575317 575316 F 666 0.00 1392 reject_low 168 ALIGNMENT 0 Y12-4j08.q1k chr12 186 72 2216 7325 C 115 0.00 1392 reject_low 296 ALIGNMENT 34 Y12-4j08.q1k chr06 252 63 1072 1261 C 190 74.74 1392 reject_low 270 ALIGNMENT 915 Y12-4j08.q1k chr12 42 1113 1076480 1077565 F 1072 95.71 1392 reject_low 15 ALIGNMENT 0 Y12-4j08.q1k chr05 845 241 1806 1805 C 605 0.00 1392 reject_low 214 ALIGNMENT 0 Y12-4j08.q1k chr15 249 845 1089542 1089541 F 597 0.00 1392 reject_low 104 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1831 1830 C 594 0.00 1392 reject_low 186 ALIGNMENT 0 Y12-4j08.q1k chr07 241 845 1089059 1089058 F 605 0.00 1392 reject_low 278 ALIGNMENT 63 Y12-4j08.q1k chr08 79 251 560417 560589 F 173 80.92 1392 reject_low 215 ALIGNMENT 0 Y12-4j08.p1k chr12 417 1018 4010 4015 F 602 0.00 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308 ALIGNMENT 29 Y12-4j08.p1k chr12 215 247 3878 3910 F 33 96.97 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308,311 ALIGNMENT 0 Y12-4j08.q1k chr02 113 62 1876 1875 C 52 0.00 1392 reject_low 219 ALIGNMENT 59 Y12-4j08.q1k chr16 143 35 1483 1592 C 109 87.16 1392 reject_low 196 ALIGNMENT 74 Y12-4j08.q1k chr07 79 240 1089006 1089167 F 162 83.95 1392 reject_low 180 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1076653 1076652 F 594 0.00 1392 reject_low 40 ALIGNMENT 80 Y12-4j08.q1k chr04 42 248 1530135 1530341 F 207 81.64 1392 reject_low 161 ALIGNMENT 0 Y12-4j08.q1k chr05 249 845 575206 575205 F 597 0.00 1392 reject_low 96 ALIGNMENT 82 Y12-4j08.q1k chr16 240 70 1710 1880 C 171 84.80 1392 reject_low 165 ALIGNMENT 29 Y12-4j08.q1k chr08 32 71 560801 560841 F 40 95.00 1392 reject_low 248 ALIGNMENT 53 Y12-4j08.p1k chr08 416 360 558621 558677 C 57 98.25 1388 reject_low 316 ALIGNMENT 0 Y12-4j08.q1k chr10 845 216 1670 1669 C 630 0.00 1392 reject_low 33 ALIGNMENT 24 Y12-4j08.p1k chr02 268 297 4108 4137 F 30 93.33 1388 reject_low 314 ALIGNMENT 49 Y12-4j08.q1k chr12 115 252 1069638 1069775 F 138 80.43 1392 reject_low 233 ALIGNMENT 22 Y12-4j08.q1k chr02 252 207 1845 1890 C 46 84.78 1392 reject_low 285 ALIGNMENT 0 Y12-4j08.q1k chr12 72 845 1076689 1076688 F 774 0.00 1392 reject_low 251 ALIGNMENT 107 Y12-4j08.q1k chr13 248 42 1778 1984 C 207 85.99 1392 reject_low 98 ALIGNMENT 0 Y12-4j08.p1k chr05 584 639 4590 4585 F 56 0.00 1388 reject_low 10 ALIGNMENT 0 Y12-4j08.q1k chr10 845 72 1670 1669 C 774 0.00 1392 reject_low 250 ALIGNMENT 82 Y12-4j08.q1k chr09 143 32 1686 1798 C 112 93.75 1392 reject_low 129 ALIGNMENT 90 Y12-4j08.q1k chr07 43 251 1089006 1089214 F 209 83.25 1392 reject_low 136 ALIGNMENT 0 Y12-4j08.q1k chr12 845 241 2127 2126 C 605 0.00 1392 reject_low 290,293 ALIGNMENT 95 Y12-4j08.q1k chr12 251 32 7506 7726 C 220 83.64 1392 reject_low 301 ALIGNMENT 0 Y12-4j08.q1k chr04 62 186 1530064 1530063 F 125 0.00 1392 reject_low 271 ALIGNMENT 0 Y12-4j08.q1k chr08 845 253 1867 1866 C 593 0.00 1392 reject_low 276 ALIGNMENT 0 Y12-4j08.q1k chr12 62 222 1069638 1069637 F 161 0.00 1392 reject_low 287 ALIGNMENT 0 Y12-4j08.q1k chr02 185 62 1876 1875 C 124 0.00 1392 reject_low 267 ALIGNMENT 53 Y12-4j08.p1k chr12 360 416 3953 4009 F 57 98.25 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308 ALIGNMENT 0 Y12-4j08.q1k chr16 845 241 1711 1710 C 605 0.00 1392 reject_low 165 ALIGNMENT 0 Y12-4j08.q1k chr09 845 257 1898 1897 C 589 0.00 1392 reject_low 54 ALIGNMENT 59 Y12-4j08.q1k chr08 35 143 560732 560841 F 109 87.16 1392 reject_low 191 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1759 1758 C 594 0.00 1392 reject_low 143 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1543 1542 C 594 0.00 1392 reject_low 29 ALIGNMENT 71 Y12-4j08.q1k chr12 179 35 7326 7471 C 145 85.52 1392|3,0 reject_low 290 ALIGNMENT 43 Y12-4j08.q1k chr05 173 240 574915 574982 F 68 89.71 1392 reject_low 260 ALIGNMENT 0 Y12-4j08.q1k chr13 186 62 2092 2091 C 125 0.00 1392 reject_low 273 ALIGNMENT 71 Y12-4j08.q1k chr12 35 179 1069881 1070026 F 145 85.52 1392|0,3 reject_low 291 ALIGNMENT 83 Y12-4j08.q1k chr12 248 42 7473 7679 C 207 82.13 1392 reject_low 304 ALIGNMENT 55 Y12-4j08.q1k chr14 251 137 1862 1976 C 115 85.22 1392 reject_low 226 ALIGNMENT 59 Y12-4j08.q1k chr07 35 143 1089285 1089394 F 109 87.16 1392 reject_low 190 ALIGNMENT 47 Y12-4j08.q1k chr05 240 63 1877 2054 C 178 77.53 1392 reject_low 239 ALIGNMENT 0 Y12-4j08.q1k chr05 845 180 1471 1470 C 666 0.00 1392 reject_low 131 ALIGNMENT 0 Y12-4j08.q1k chr12 845 216 7327 7326 C 630 0.00 1392 reject_low 302 ALIGNMENT 0 Y12-4j08.q1k chr05 62 78 574893 574892 F 17 0.00 1392 reject_low 210 ALIGNMENT 20 Y12-4j08.q1k chr12 223 252 1069638 1069667 F 30 90.00 1392 reject_low 287 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 2047 2046 C 594 0.00 1392 reject_low 265 ALIGNMENT 53 Y12-4j08.p1k chr12 360 416 9488 9544 F 57 98.25 1388 reject_low 311 ALIGNMENT 29 Y12-4j08.q1k chr12 32 71 1076649 1076689 F 40 95.00 1392 reject_low 251 ALIGNMENT 0 Y12-4j08.q1k chr16 216 845 946494 946493 F 630 0.00 1392 reject_low 93 ALIGNMENT 0 Y12-4j08.q1k chr12 845 144 1684 1683 C 702 0.00 1392 reject_low 157 ALIGNMENT 935 Y12-4j08.p1k chr16 30 1101 3881 4961 F 1072 96.27 1388 reject_low 8 ALIGNMENT 24 Y12-4j08.p1k chr16 297 268 944241 944270 C 30 93.33 1388 reject_low 312 ALIGNMENT 113 Y12-4j08.q1k chr12 251 32 7398 7618 C 220 86.36 1392 reject_low 299 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 1778 1777 C 594 0.00 1392 reject_low 66 ALIGNMENT 83 Y12-4j08.q1k chr16 42 248 946033 946239 F 207 82.13 1392 reject_low 156 ALIGNMENT 0 Y12-4j08.q1k chr16 249 845 946239 946238 F 597 0.00 1392 reject_low 156 ALIGNMENT 51 Y12-4j08.q1k chr12 107 32 7326 7402 C 76 92.11 1392 reject_low 293 ALIGNMENT 127 Y12-4j08.q1k chr09 251 42 1794 2003 C 210 89.05 1392 reject_low 65 ALIGNMENT 0 Y12-4j08.q1k chr12 253 845 1076438 1076437 F 593 0.00 1392 reject_low 295 ALIGNMENT 130 Y12-4j08.q1k chr16 42 251 946141 946350 F 210 89.52 1392 reject_low 59 ALIGNMENT 50 Y12-4j08.p1k chr16 1101 1019 944075 944161 C 83 87.95 1388 reject_low 312 ALIGNMENT 0 Y12-4j08.q1k chr12 845 241 7662 7661 C 605 0.00 1392 reject_low 307 ALIGNMENT 0 Y12-4j08.q1k chr14 136 62 1977 1976 C 75 0.00 1392 reject_low 226 ALIGNMENT 145 Y12-4j08.q1k chr15 42 251 1089408 1089617 F 210 91.90 1392 reject_low 43 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 1850 1849 C 594 0.00 1392 reject_low 86 ALIGNMENT 983 Y12-4j08.p1k chr10 21 1101 4332 5424 F 1081 97.59 1388 reject_low 2 ALIGNMENT 0 Y12-4j08.q1k chr08 249 845 560694 560693 F 597 0.00 1392 reject_low 127 ALIGNMENT 0 Y12-4j08.q1k chr12 241 845 1076354 1076353 F 605 0.00 1392 reject_low 291,294 ALIGNMENT 0 Y12-4j08.q1k chr13 845 249 1815 1814 C 597 0.00 1392 reject_low 153 ALIGNMENT 43 Y12-4j08.q1k chr12 173 240 1076287 1076354 F 68 89.71 1392|4,0 reject_low 291,294 ALIGNMENT 0 Y12-4j08.q1k chr16 845 216 1484 1483 C 630 0.00 1392 reject_low 126 ALIGNMENT 0 Y12-4j08.q1k chr16 845 180 1484 1483 C 666 0.00 1392 reject_low 175 ALIGNMENT 112 Y12-4j08.q1k chr12 215 42 1683 1856 C 174 90.23 1392 reject_low 92 ALIGNMENT 0 Y12-4j08.q1k chr04 252 845 1530200 1530199 F 594 0.00 1392 reject_low 231 ALIGNMENT 127 Y12-4j08.q1k chr12 251 42 1827 2036 C 210 89.05 1392 reject_low 67 ALIGNMENT 0 Y12-4j08.q1k chr12 241 845 1069691 1069690 F 605 0.00 1392 reject_low 279 ALIGNMENT 0 Y12-4j08.q1k chr15 241 845 1089318 1089317 F 605 0.00 1392 reject_low 268 ALIGNMENT 0 Y12-4j08.q1k chr15 252 845 1089581 1089580 F 594 0.00 1392 reject_low 79 ALIGNMENT 0 Y12-4j08.q1k chr02 845 253 1846 1845 C 593 0.00 1392 reject_low 285 ALIGNMENT 0 Y12-4j08.q1k chr08 241 845 560470 560469 F 605 0.00 1392 reject_low 283 ALIGNMENT 0 Y12-4j08.q1k chr12 172 108 2194 7325 C 65 0.00 1392 reject_low 293 ALIGNMENT 130 Y12-4j08.q1k chr10 251 42 1957 2166 C 210 89.52 1392 reject_low 58 ALIGNMENT 0 Y12-4j08.q1k chr13 845 252 1740 1739 C 594 0.00 1392 reject_low 77 ALIGNMENT 145 Y12-4j08.q1k chr04 42 251 1530243 1530452 F 210 91.90 1392 reject_low 36 ALIGNMENT 0 Y12-4j08.p1k chr08 1018 417 558615 558620 C 602 0.00 1388 reject_low 316 ALIGNMENT 70 Y12-4j08.q1k chr10 251 45 2065 2271 C 207 80.19 1392 reject_low 181 ALIGNMENT 0 Y12-4j08.q1k chr16 845 253 1735 1734 C 593 0.00 1392 reject_low 220 ALIGNMENT 31 Y12-4j08.q1k chr08 187 240 560417 560470 F 54 87.04 1392 reject_low 283 ALIGNMENT 0 Y12-4j08.p1k chr16 1018 417 944162 944167 C 602 0.00 1388 reject_low 312 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1651 1650 C 594 0.00 1392 reject_low 90 ALIGNMENT 0 Y12-4j08.q1k chr08 241 845 560614 560613 F 605 0.00 1392 reject_low 133 ALIGNMENT 0 Y12-4j08.p1k chr13 194 214 3764 3753 F 21 0.00 1388 reject_low 313 ALIGNMENT 0 Y12-4j08.p1k chr08 214 194 558753 558742 C 21 0.00 1388 reject_low 316 ALIGNMENT 29 Y12-4j08.q1k chr04 32 71 1530448 1530488 F 40 95.00 1392 reject_low 245 ALIGNMENT 0 Y12-4j08.q1k chr15 253 845 1089402 1089401 F 593 0.00 1392 reject_low 229 ALIGNMENT 0 Y12-4j08.q1k chr06 845 252 1002 1001 C 594 0.00 1392 reject_low 221 ALIGNMENT 0 Y12-4j08.q1k chr10 845 252 2030 2029 C 594 0.00 1392 reject_low 105 ALIGNMENT 0 Y12-4j08.q1k chr06 845 180 894 893 C 666 0.00 1392 reject_low 228 ALIGNMENT 0 Y12-4j08.q1k chr09 845 252 1975 1974 C 594 0.00 1392 reject_low 148 ALIGNMENT 52 Y12-4j08.p1k chr02 138 193 4033 4088 F 56 98.21 1388 reject_low 314 ALIGNMENT 0 Y12-4j08.q1k chr12 241 845 1069799 1069798 F 605 0.00 1392 reject_low 185 ALIGNMENT 107 Y12-4j08.q1k chr14 248 42 1685 1891 C 207 85.99 1392 reject_low 99 ALIGNMENT 0 Y12-4j08.q1k chr12 845 253 7686 7685 C 593 0.00 1392 reject_low 308 ALIGNMENT 29 Y12-4j08.q1k chr12 32 71 1069986 1070026 F 40 95.00 1392 reject_low 295,297 ALIGNMENT 87 Y12-4j08.q1k chr12 43 240 1076265 1076462 F 198 83.33 1392 reject_low 147 ALIGNMENT 90 Y12-4j08.q1k chr12 240 43 7553 7750 C 198 83.84 1392 reject_low 303 ALIGNMENT 0 Y12-4j08.q1k chr07 62 150 1089006 1089005 F 89 0.00 1392 reject_low 243 ALIGNMENT 0 Y12-4j08.q1k chr12 176 177 2190 7328 C 0 0.00 1392 reject_low 290 ALIGNMENT 91 Y12-4j08.q1k chr16 215 32 1483 1667 C 184 85.87 1392 reject_low 126 ALIGNMENT 145 Y12-4j08.q1k chr16 251 42 1519 1728 C 210 91.90 1392 reject_low 44 ALIGNMENT 0 Y12-4j08.q1k chr08 180 845 560841 560840 F 666 0.00 1392 reject_low 170 ALIGNMENT 0 Y12-4j08.p1k chr08 298 359 3669 3684 F 62 0.00 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.q1k chr05 252 845 575029 575028 F 594 0.00 1392 reject_low 224 ALIGNMENT 0 Y12-4j08.q1k chr12 144 845 1076689 1076688 F 702 0.00 1392 reject_low 192 ALIGNMENT 104 Y12-4j08.q1k chr04 42 248 1530171 1530377 F 207 85.51 1392 reject_low 101 ALIGNMENT 0 Y12-4j08.q1k chr05 253 845 575066 575065 F 593 0.00 1392 reject_low 210 ALIGNMENT 0 Y12-4j08.q1k chr16 62 78 945962 945961 F 17 0.00 1392 reject_low 213 ALIGNMENT 91 Y12-4j08.q1k chr05 32 215 575133 575317 F 184 85.87 1392 reject_low 118 ALIGNMENT 145 Y12-4j08.q1k chr13 251 42 1703 1912 C 210 91.90 1392 reject_low 41 ALIGNMENT 91 Y12-4j08.q1k chr02 215 42 1486 1659 C 174 86.21 1392 reject_low 135 ALIGNMENT 37 Y12-4j08.q1k chr08 173 240 560439 560506 F 68 86.76 1392 reject_low 269 ALIGNMENT 0 Y12-4j08.q1k chr09 845 108 1687 1686 C 738 0.00 1392 reject_low 203 ALIGNMENT 43 Y12-4j08.q1k chr14 240 173 1909 1976 C 68 89.71 1392 reject_low 262 ALIGNMENT 0 Y12-4j08.q1k chr16 105 62 1881 1880 C 44 0.00 1392 reject_low 220 ALIGNMENT 911 Y12-4j08.q1k chr07 42 1111 1089185 1090268 F 1070 95.61 1392 reject_low 20 ALIGNMENT 47 Y12-4j08.q1k chr15 144 251 1089258 1089365 F 108 83.33 1392 reject_low 242 ALIGNMENT 0 Y12-4j08.q1k chr16 180 845 946494 946493 F 666 0.00 1392 reject_low 84 ALIGNMENT 0 Y12-4j08.q1k chr16 845 249 1631 1630 C 597 0.00 1392 reject_low 155 ALIGNMENT 64 Y12-4j08.q1k chr05 79 252 574893 575066 F 174 81.03 1392 reject_low 210 ALIGNMENT 0 Y12-4j08.q1k chr12 62 114 1069638 1069637 F 53 0.00 1392 reject_low 233 ALIGNMENT 0 Y12-4j08.q1k chr13 845 72 1668 1667 C 774 0.00 1392 reject_low 252 ALIGNMENT 0 Y12-4j08.q1k chr05 845 144 1471 1470 C 702 0.00 1392 reject_low 166 ALIGNMENT 0 Y12-4j08.p1k chr12 298 1018 9472 9550 F 721 0.00 1388 reject_low 309 ALIGNMENT 46 Y12-4j08.q1k chr10 240 42 2148 2346 C 199 76.38 1392 reject_low 241 ALIGNMENT 0 Y12-4j08.q1k chr05 845 253 1902 1901 C 593 0.00 1392 reject_low 282 ALIGNMENT 47 Y12-4j08.p1k chr02 1019 1101 4217 4303 F 83 86.75 1388 reject_low 314 ALIGNMENT 0 Y12-4j08.q1k chr12 253 845 1069775 1069774 F 593 0.00 1392 reject_low 233 ALIGNMENT 54 Y12-4j08.q1k chr02 256 150 1769 1875 C 107 85.05 1392 reject_low 197 ALIGNMENT 106 Y12-4j08.q1k chr12 179 32 1683 1831 C 148 93.24 1392 reject_low 83 ALIGNMENT 0 Y12-4j08.p1k chr12 417 1018 9545 9550 F 602 0.00 1388 reject_low 311 ALIGNMENT 0 Y12-4j08.q1k chr10 845 180 1670 1669 C 666 0.00 1392 reject_low 46 ALIGNMENT 0 Y12-4j08.q1k chr12 141 140 1070024 1076290 F 0 0.00 1392 reject_low 289 ALIGNMENT 0 Y12-4j08.q1k chr08 845 72 1652 1651 C 774 0.00 1392 reject_low 235 ALIGNMENT 95 Y12-4j08.q1k chr05 251 32 1722 1942 C 220 83.64 1392 reject_low 106 ALIGNMENT 145 Y12-4j08.q1k chr12 251 42 7362 7571 C 210 91.90 1392 reject_low 298 ALIGNMENT 113 Y12-4j08.q1k chr13 251 32 1739 1959 C 220 86.36 1392 reject_low 77 ALIGNMENT 56 Y12-4j08.q1k chr08 251 73 1759 1937 C 179 79.33 1392 reject_low 223 ALIGNMENT 124 Y12-4j08.q1k chr16 42 251 946177 946386 F 210 88.57 1392 reject_low 69 ALIGNMENT 0 Y12-4j08.q1k chr08 62 136 560439 560438 F 75 0.00 1392 reject_low 238 ALIGNMENT 0 Y12-4j08.q1k chr16 845 252 1664 1663 C 594 0.00 1392 reject_low 128 ALIGNMENT 0 Y12-4j08.q1k chr04 216 845 1530488 1530487 F 630 0.00 1392 reject_low 117 ALIGNMENT 0 Y12-4j08.q1k chr07 62 114 1089006 1089005 F 53 0.00 1392 reject_low 230 ALIGNMENT 145 Y12-4j08.q1k chr12 42 251 1069781 1069990 F 210 91.90 1392 reject_low 39 ALIGNMENT 0 Y12-4j08.q1k chr14 845 252 1647 1646 C 594 0.00 1392 reject_low 78 ALIGNMENT 0 Y12-4j08.q1k chr16 72 845 946494 946493 F 774 0.00 1392 reject_low 237 ALIGNMENT 79 Y12-4j08.q1k chr08 143 32 1651 1763 C 112 92.86 1392 reject_low 132 ALIGNMENT 0 Y12-4j08.p1k chr12 639 584 1067098 1067093 C 56 0.00 1388 reject_low 9 ALIGNMENT 0 Y12-4j08.q1k chr02 845 241 1822 1821 C 605 0.00 1392 reject_low 267 ALIGNMENT 0 Y12-4j08.q1k chr15 62 143 1089258 1089257 F 82 0.00 1392 reject_low 242 ALIGNMENT 0 Y12-4j08.p1k chr13 248 267 3787 3782 F 20 0.00 1388 reject_low 313 ALIGNMENT 33 Y12-4j08.q1k chr12 252 187 2150 2215 C 66 84.85 1392 reject_low 296 ALIGNMENT 59 Y12-4j08.q1k chr13 143 35 1667 1776 C 109 87.16 1392 reject_low 193 ALIGNMENT 850 Y12-4j08.q1k chr06 1113 32 17 1113 C 1082 93.44 1392 reject_low 27 ALIGNMENT 64 Y12-4j08.q1k chr12 252 79 2042 2215 C 174 81.03 1392 reject_low 292 ALIGNMENT 0 Y12-4j08.q1k chr14 845 180 1575 1574 C 666 0.00 1392 reject_low 173 ALIGNMENT 0 Y12-4j08.q1k chr06 845 108 894 893 C 738 0.00 1392 reject_low 284 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 1792 1791 C 594 0.00 1392 reject_low 71 ALIGNMENT 61 Y12-4j08.q1k chr06 215 42 893 1066 C 174 80.46 1392 reject_low 216 ALIGNMENT 0 Y12-4j08.q1k chr10 845 257 1881 1880 C 589 0.00 1392 reject_low 31 ALIGNMENT 0 Y12-4j08.q1k chr04 252 845 1530416 1530415 F 594 0.00 1392 reject_low 72 ALIGNMENT 0 Y12-4j08.q1k chr09 131 62 2094 2093 C 70 0.00 1392 reject_low 148 ALIGNMENT 51 Y12-4j08.q1k chr10 107 32 1669 1745 C 76 92.11 1392 reject_low 204 ALIGNMENT 54 Y12-4j08.q1k chr12 107 32 1683 1759 C 76 93.42 1392 reject_low 183 ALIGNMENT 0 Y12-4j08.q1k chr08 845 216 1652 1651 C 630 0.00 1392 reject_low 144 ALIGNMENT 24 Y12-4j08.p1k chr08 268 297 3639 3668 F 30 93.33 1388 reject_low 315 ALIGNMENT 0 Y12-4j08.q1k chr02 845 180 1487 1486 C 666 0.00 1392 reject_low 159 ALIGNMENT 20 Y12-4j08.q1k chr07 223 252 1089006 1089035 F 30 90.00 1392 reject_low 286 ALIGNMENT 33 Y12-4j08.q1k chr04 187 252 1530064 1530129 F 66 84.85 1392 reject_low 271 ALIGNMENT 0 Y12-4j08.q1k chr12 845 249 7438 7437 C 597 0.00 1392 reject_low 300 ALIGNMENT 34 Y12-4j08.p1k chr05 21 63 4025 4069 F 43 95.35 1388 reject_low 10 ALIGNMENT 0 Y12-4j08.p1k chr08 194 214 3620 3609 F 21 0.00 1388 reject_low 315 ALIGNMENT 32 Y12-4j08.q1k chr08 71 32 1651 1691 C 40 97.50 1392 reject_low 235 ALIGNMENT 71 Y12-4j08.q1k chr08 35 179 560696 560841 F 145 85.52 1392 reject_low 170 ALIGNMENT 0 Y12-4j08.q1k chr14 845 249 1686 1685 C 597 0.00 1392 reject_low 99 ALIGNMENT 76 Y12-4j08.q1k chr08 251 42 1723 1932 C 210 80.95 1392 reject_low 176 ALIGNMENT 29 Y12-4j08.p1k chr08 215 247 3610 3642 F 33 96.97 1388 reject_low 315 ALIGNMENT 921 Y12-4j08.q1k chr09 1113 33 810 1905 C 1081 95.65 1392 reject_low 11 ALIGNMENT 909 Y12-4j08.q1k chr13 1113 42 791 1876 C 1072 95.52 1392 reject_low 22 ALIGNMENT 59 Y12-4j08.q1k chr12 35 143 1069917 1070026 F 109 87.16 1392|0,3 reject_low 289 ALIGNMENT 0 Y12-4j08.q1k chr15 253 845 1089294 1089293 F 593 0.00 1392 reject_low 281 ALIGNMENT 0 Y12-4j08.q1k chr04 72 845 1530488 1530487 F 774 0.00 1392 reject_low 245 ALIGNMENT 0 Y12-4j08.q1k chr15 252 845 1089617 1089616 F 594 0.00 1392 reject_low 43 ALIGNMENT 71 Y12-4j08.q1k chr16 179 35 1483 1628 C 145 85.52 1392 reject_low 175 ALIGNMENT 0 Y12-4j08.q1k chr05 216 845 575317 575316 F 630 0.00 1392 reject_low 118 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1069954 1069953 F 594 0.00 1392 reject_low 75 ALIGNMENT 29 Y12-4j08.q1k chr15 32 71 1089613 1089653 F 40 95.00 1392 reject_low 254 ALIGNMENT 0 Y12-4j08.q1k chr13 845 249 1779 1778 C 597 0.00 1392 reject_low 98 ALIGNMENT 0 Y12-4j08.q1k chr08 62 186 560417 560416 F 125 0.00 1392 reject_low 283 ALIGNMENT 0 Y12-4j08.q1k chr15 241 845 1089426 1089425 F 605 0.00 1392 reject_low 177 ALIGNMENT 33 Y12-4j08.q1k chr14 252 187 1933 1998 C 66 84.85 1392 reject_low 274 ALIGNMENT 50 Y12-4j08.p1k chr12 1019 1101 4016 4102 F 83 87.95 1388 reject_low 28,298,299,300,301,302,303,304,305,306,307,308 ALIGNMENT 0 Y12-4j08.q1k chr16 241 845 946051 946050 F 605 0.00 1392 reject_low 263 ALIGNMENT 0 Y12-4j08.q1k chr05 845 72 1471 1470 C 774 0.00 1392 reject_low 234 ALIGNMENT 55 Y12-4j08.q1k chr13 251 137 1955 2069 C 115 85.22 1392 reject_low 225 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946458 946457 F 594 0.00 1392 reject_low 61 ALIGNMENT 107 Y12-4j08.q1k chr08 32 251 560441 560661 F 220 85.45 1392 reject_low 87 ALIGNMENT 0 Y12-4j08.p1k chr12 248 267 9446 9441 F 20 0.00 1388 reject_low 309 ALIGNMENT 0 Y12-4j08.q1k chr13 845 180 1668 1667 C 666 0.00 1392 reject_low 172 ALIGNMENT 43 Y12-4j08.q1k chr12 240 173 2126 2193 C 68 89.71 1392|0,4 reject_low 290,293 ALIGNMENT 107 Y12-4j08.q1k chr09 251 32 1830 2050 C 220 85.45 1392 reject_low 88 ALIGNMENT 71 Y12-4j08.q1k chr07 35 179 1089249 1089394 F 145 85.52 1392 reject_low 169 ALIGNMENT 29 Y12-4j08.q1k chr07 32 71 1089354 1089394 F 40 95.00 1392 reject_low 247 ALIGNMENT 49 Y12-4j08.q1k chr08 137 251 560439 560553 F 115 83.48 1392 reject_low 238 ALIGNMENT 0 Y12-4j08.q1k chr16 241 845 946159 946158 F 605 0.00 1392 reject_low 142 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1069738 1069737 F 594 0.00 1392 reject_low 256 ALIGNMENT 0 Y12-4j08.q1k chr16 62 136 945984 945983 F 75 0.00 1392 reject_low 227 ALIGNMENT 0 Y12-4j08.q1k chr09 167 62 2094 2093 C 106 0.00 1392 reject_low 257 ALIGNMENT 0 Y12-4j08.q1k chr07 72 845 1089394 1089393 F 774 0.00 1392 reject_low 247 ALIGNMENT 53 Y12-4j08.p1k chr13 360 416 3829 3885 F 57 98.25 1388 reject_low 313 ALIGNMENT 0 Y12-4j08.q1k chr04 252 845 1530308 1530307 F 594 0.00 1392 reject_low 114 ALIGNMENT 0 Y12-4j08.q1k chr13 845 144 1668 1667 C 702 0.00 1392 reject_low 193 ALIGNMENT 52 Y12-4j08.p1k chr06 138 193 2869 2924 F 56 98.21 1388 reject_low 310 ALIGNMENT 29 Y12-4j08.p1k chr02 215 247 4079 4111 F 33 96.97 1388 reject_low 314 ALIGNMENT 950 Y12-4j08.p1k chr12 1101 30 1073211 1074291 C 1072 96.74 1388 accept_tel 0 ALIGNMENT 61 Y12-4j08.q1k chr12 79 252 1076265 1076438 F 174 80.46 1392 reject_low 295 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1069846 1069845 F 594 0.00 1392 reject_low 145 ALIGNMENT 0 Y12-4j08.q1k chr09 92 62 2097 2096 C 31 0.00 1392 reject_low 149 ALIGNMENT 32 Y12-4j08.q1k chr05 71 32 1470 1510 C 40 97.50 1392 reject_low 234 ALIGNMENT 91 Y12-4j08.q1k chr14 215 32 1574 1758 C 184 85.87 1392 reject_low 124 ALIGNMENT 33 Y12-4j08.q1k chr16 187 252 945962 946027 F 66 84.85 1392 reject_low 275 ALIGNMENT 0 Y12-4j08.q1k chr12 252 845 1076617 1076616 F 594 0.00 1392 reject_low 76 ALIGNMENT 0 Y12-4j08.p1k chr02 248 267 4112 4107 F 20 0.00 1388 reject_low 314 ALIGNMENT 0 Y12-4j08.p1k chr13 417 1018 3886 3891 F 602 0.00 1388 reject_low 313 ALIGNMENT 64 Y12-4j08.q1k chr05 240 42 1805 2003 C 199 79.40 1392 reject_low 214 ALIGNMENT 24 Y12-4j08.p1k chr13 268 297 3783 3812 F 30 93.33 1388 reject_low 313 ALIGNMENT 87 Y12-4j08.q1k chr12 43 251 1069638 1069846 F 209 82.78 1392 reject_low 145 ALIGNMENT 950 Y12-4j08.p1k chr15 1101 30 1086175 1087255 C 1072 96.74 1388 reject_low 4 ALIGNMENT 88 Y12-4j08.q1k chr09 251 132 1974 2093 C 120 93.33 1392 reject_low 148 ALIGNMENT 95 Y12-4j08.q1k chr16 32 251 945986 946206 F 220 83.64 1392 reject_low 111 ALIGNMENT 0 Y12-4j08.q1k chr08 252 845 560553 560552 F 594 0.00 1392 reject_low 238 ALIGNMENT 46 Y12-4j08.q1k chr06 240 42 1048 1246 C 199 76.38 1392 reject_low 240 ALIGNMENT 107 Y12-4j08.q1k chr05 42 248 575000 575206 F 207 85.99 1392 reject_low 96 ALIGNMENT 0 Y12-4j08.q1k chr15 249 845 1089506 1089505 F 597 0.00 1392 reject_low 164 ALIGNMENT 0 Y12-4j08.q1k chr14 172 62 1977 1976 C 111 0.00 1392 reject_low 262 ALIGNMENT 113 Y12-4j08.q1k chr12 32 251 1076397 1076617 F 220 86.36 1392 reject_low 76 ALIGNMENT 912 Y12-4j08.q1k chr05 42 1113 575108 576193 F 1072 95.62 1392 reject_low 18 ALIGNMENT 0 Y12-4j08.q1k chr05 241 845 574982 574981 F 605 0.00 1392 reject_low 260 ALIGNMENT 0 Y12-4j08.q1k chr14 845 252 1863 1862 C 594 0.00 1392 reject_low 226 ALIGNMENT 32 Y12-4j08.q1k chr12 71 32 1683 1723 C 40 97.50 1392 reject_low 236 ALIGNMENT 0 Y12-4j08.q1k chr12 108 845 1076689 1076688 F 738 0.00 1392 reject_low 205 ALIGNMENT 61 Y12-4j08.q1k chr06 240 45 976 1171 C 196 79.08 1392 reject_low 218 ALIGNMENT 0 Y12-4j08.q1k chr16 253 845 946027 946026 F 593 0.00 1392 reject_low 275 ALIGNMENT 110 Y12-4j08.q1k chr12 248 42 1902 2108 C 207 86.47 1392 reject_low 95 ALIGNMENT 0 Y12-4j08.q1k chr02 845 252 1523 1522 C 594 0.00 1392 reject_low 34 ALIGNMENT 61 Y12-4j08.q1k chr04 79 252 1530064 1530237 F 174 80.46 1392 reject_low 217 ALIGNMENT 0 Y12-4j08.q1k chr02 206 62 1891 1890 C 145 0.00 1392 reject_low 285 ALIGNMENT 0 Y12-4j08.q1k chr15 62 215 1089258 1089257 F 154 0.00 1392 reject_low 281 ALIGNMENT 0 Y12-4j08.q1k chr12 845 252 1828 1827 C 594 0.00 1392 reject_low 67 ALIGNMENT 0 Y12-4j08.q1k chr10 845 241 2149 2148 C 605 0.00 1392 reject_low 241 ALIGNMENT 0 Y12-4j08.p1k chr06 417 1018 3047 3052 F 602 0.00 1388 reject_low 310 ALIGNMENT 0 Y12-4j08.q1k chr16 845 72 1484 1483 C 774 0.00 1392 reject_low 255 ALIGNMENT 0 Y12-4j08.q1k chr08 845 252 1760 1759 C 594 0.00 1392 reject_low 223 ALIGNMENT 0 Y12-4j08.q1k chr12 72 186 1070027 1076264 F 115 0.00 1392 reject_low 297 ALIGNMENT 0 Y12-4j08.q1k chr05 845 252 1507 1506 C 594 0.00 1392 reject_low 35 ALIGNMENT 59 Y12-4j08.q1k chr04 35 143 1530379 1530488 F 109 87.16 1392 reject_low 188 ALIGNMENT 912 Y12-4j08.q1k chr16 1113 42 607 1692 C 1072 95.62 1392 reject_low 19 ALIGNMENT 51 Y12-4j08.q1k chr09 107 32 1686 1762 C 76 92.11 1392 reject_low 203 ALIGNMENT 71 Y12-4j08.q1k chr04 35 179 1530343 1530488 F 145 85.52 1392 reject_low 167 ALIGNMENT 0 Y12-4j08.q1k chr04 62 78 1530064 1530063 F 17 0.00 1392 reject_low 217 ALIGNMENT 0 Y12-4j08.q1k chr05 108 845 575317 575316 F 738 0.00 1392 reject_low 200 ALIGNMENT 0 Y12-4j08.q1k chr05 252 845 575137 575136 F 594 0.00 1392 reject_low 107 ALIGNMENT 0 Y12-4j08.q1k chr16 252 845 946098 946097 F 594 0.00 1392 reject_low 227 ALIGNMENT 29 Y12-4j08.p1k chr13 215 247 3754 3786 F 33 96.97 1388 reject_low 313 ALIGNMENT 999 Y12-4j09.p1k chr05 1218 17 253291 254495 C 1202 96.01 1414 accept 0 ALIGNMENT 920 Y12-4j09.q1k chr05 30 1199 250688 251872 F 1170 94.44 1395 accept 0 ALIGNMENT 1018 Y12-4j11.p1k chr10 1150 20 103043 104182 C 1131 97.97 1404 accept 0 ALIGNMENT 954 Y12-4j12.q1k chr09 1147 32 216698 217824 C 1116 96.86 1361 accept 0 ALIGNMENT 977 Y12-4j12.p1k chr09 27 1147 216464 217598 F 1121 96.97 1407 accept 0 ALIGNMENT 1011 Y12-4j13.q1k chr07 28 1204 1005394 1006574 F 1177 95.58 1416 accept 0 ALIGNMENT 267 Y12-4j13.q1k chr08 29 742 471716 472429 F 714 79.41 1416 reject_low 1 ALIGNMENT 970 Y12-4j13.p1k chr07 1167 23 1008751 1009913 C 1145 95.90 1393 accept 0 ALIGNMENT 0 Y12-4j13.q1k chr08 743 909 472429 472428 F 167 0.00 1416 reject_low 1 ALIGNMENT 921 Y12-4j14.q1k chr07 36 1174 89704 90865 F 1139 95.70 1397 accept 0 ALIGNMENT 0 Y12-4j14.p1k chr04 304 794 733329 733328 F 491 0.00 1413 reject_low 1 ALIGNMENT 70 Y12-4j14.p1k chr04 226 303 733252 733329 F 78 97.44 1413 reject_low 1 ALIGNMENT 0 Y12-4j14.p1k chr04 62 225 733252 733251 F 164 0.00 1413 reject_low 1 ALIGNMENT 1011 Y12-4j14.p1k chr07 1209 21 92791 93994 C 1189 95.88 1413 accept 0 ALIGNMENT 0 Y12-4j15.q1k chr13 552 856 760320 760319 F 305 0.00 1356 reject_low 1 ALIGNMENT 0 Y12-4j15.q1k chr13 106 360 759875 760129 F 255 0.00 1356 reject_low 1 ALIGNMENT 44 Y12-4j15.q1k chr13 46 105 759815 759874 F 60 91.67 1356 reject_low 1 ALIGNMENT 915 Y12-4j15.p1k chr15 1198 21 912084 913289 C 1178 94.48 1400 accept 0 ALIGNMENT 979 Y12-4j15.q1k chr15 35 1145 909336 910458 F 1111 96.40 1356 accept 0 ALIGNMENT 38 Y12-4j15.q1k chr13 361 551 760130 760320 F 191 75.39 1356 reject_low 1 ALIGNMENT 966 Y12-4j16.p1k chr01 17 1152 166255 167392 F 1136 96.30 1375 accept 0 ALIGNMENT 75 Y12-4j16.p1k chr15 107 29 854178 854256 C 79 98.73 1375 reject_low 2 ALIGNMENT 1022 Y12-4j16.q1k chr01 1163 38 169766 170904 C 1126 97.34 1369 accept 0 ALIGNMENT 74 Y12-4j16.p1k chr05 102 28 312018 312092 C 75 100.00 1375 reject_low 3 ALIGNMENT 0 Y12-4j16.p1k chr05 842 103 312019 312018 C 740 0.00 1375 reject_low 3 ALIGNMENT 0 Y12-4j16.p1k chr15 842 108 854179 854178 C 735 0.00 1375 reject_low 2 ALIGNMENT 72 Y12-4j16.p1k chr12 101 29 214884 214956 C 73 100.00 1375 reject_low 4 ALIGNMENT 0 Y12-4j16.p1k chr12 842 102 214885 214884 C 741 0.00 1375 reject_low 4 ALIGNMENT 76 Y12-4j16.p1k chr07 29 108 794422 794501 F 80 98.75 1375 reject_low 1 ALIGNMENT 0 Y12-4j16.p1k chr07 109 842 794501 794500 F 734 0.00 1375 reject_low 1 ALIGNMENT 959 Y12-4j17.q1k chr07 33 1144 601539 602664 F 1112 96.67 1355 accept_chi 1 ALIGNMENT 1025 Y12-4j17.p1k chr10 15 1184 629898 631072 F 1170 96.67 1397 accept_chi 0 ALIGNMENT 709 Y12-4j18.q1k chr16 1235 39 850947 852144 C 1197 87.13 1427 ambiguous_trans 24 ALIGNMENT 976 Y12-4j18.q1k chr02 35 1236 34082 35284 F 1202 94.68 1427 ambiguous_trans 9 ALIGNMENT 912 Y12-4j18.q1k chr04 1236 39 645814 647012 C 1198 92.99 1427 ambiguous_trans 12 ALIGNMENT 984 Y12-4j18.p1k chr10 19 1129 352867 353980 F 1111 97.57 1353 accept 0 ALIGNMENT 997 Y12-4j18.q1k chr07 35 1236 815893 817095 F 1202 95.26 1427 ambiguous_trans 4 ALIGNMENT 718 Y12-4j18.q1k chr13 39 1235 188570 189767 F 1197 87.39 1427 ambiguous_trans 22 ALIGNMENT 997 Y12-4j18.q1k chr06 35 1236 142349 143551 F 1202 95.26 1427 ambiguous_trans 2 ALIGNMENT 463 Y12-4j18.q1k chr10 39 1235 482367 483564 F 1197 80.28 1427 ambiguous_trans 25 ALIGNMENT 897 Y12-4j18.q1k chr04 1236 39 878615 879813 C 1198 92.57 1427 ambiguous_trans 14 ALIGNMENT 735 Y12-4j18.q1k chr13 39 1236 200737 201935 F 1198 88.06 1427 ambiguous_trans 21 ALIGNMENT 985 Y12-4j18.q1k chr12 35 1236 945630 946832 F 1202 94.93 1427 ambiguous_trans 7 ALIGNMENT 718 Y12-4j18.q1k chr16 39 1235 848817 850014 F 1197 87.39 1427 ambiguous_trans 23 ALIGNMENT 997 Y12-4j18.q1k chr07 1236 35 569060 570262 C 1202 95.26 1427 ambiguous_trans 3 ALIGNMENT 846 Y12-4j18.q1k chr12 39 1236 597549 598747 F 1198 91.15 1427 ambiguous_trans 17 ALIGNMENT 991 Y12-4j18.q1k chr14 1236 35 562349 563551 C 1202 95.09 1427 ambiguous_trans 5 ALIGNMENT 846 Y12-4j18.q1k chr16 1236 39 804958 806156 C 1198 91.15 1427 ambiguous_trans 18 ALIGNMENT 985 Y12-4j18.q1k chr15 35 1236 974723 975925 F 1202 94.93 1427 ambiguous_trans 8 ALIGNMENT 892 Y12-4j18.q1k chr04 35 1236 985606 986808 F 1202 92.35 1427 ambiguous_trans 15 ALIGNMENT 900 Y12-4j18.q1k chr14 39 1236 523548 524746 F 1198 92.65 1427 ambiguous_trans 13 ALIGNMENT 985 Y12-4j18.q1k chr04 1236 35 514000 515202 C 1202 94.93 1427 ambiguous_trans 6 ALIGNMENT 997 Y12-4j18.q1k chr03 35 1236 89251 90453 F 1202 95.26 1427 ambiguous_trans 1 ALIGNMENT 849 Y12-4j18.q1k chr07 1236 39 562164 563362 C 1198 91.24 1427 ambiguous_trans 16 ALIGNMENT 798 Y12-4j18.q1k chr10 39 1236 476783 477981 F 1198 89.82 1427 ambiguous_trans 19 ALIGNMENT 783 Y12-4j18.q1k chr01 1236 39 160559 161757 C 1198 89.40 1427 ambiguous_trans 20 ALIGNMENT 973 Y12-4j18.q1k chr04 35 1236 876257 877459 F 1202 94.59 1427 ambiguous_trans 10 ALIGNMENT 970 Y12-4j18.q1k chr15 1236 35 704380 705582 C 1202 94.51 1427 ambiguous_trans 11 ALIGNMENT 1053 Y12-4j19.q1k chr12 1237 38 211683 212892 C 1200 96.42 1390 accept 0 ALIGNMENT 932 Y12-4j19.p1k chr12 21 1127 208692 209812 F 1107 95.84 1339 accept 0 ALIGNMENT 918 Y12-4j20.q1k chr04 1095 35 1420942 1422011 C 1061 95.95 1329 accept 0 ALIGNMENT 1030 Y12-4j20.p1k chr04 19 1174 1416846 1418016 F 1156 97.66 1349 accept 0 ALIGNMENT 44 Y12-4j20.q1k chr15 245 36 512332 512541 C 210 74.29 1329 reject_low 1 ALIGNMENT 0 Y12-4j20.q1k chr15 853 246 512333 512332 C 608 0.00 1329 reject_low 1 ALIGNMENT 0 Y12-4j21.p1k chr14 774 180 252060 252059 C 595 0.00 1366 reject_low 1 ALIGNMENT 131 Y12-4j21.p1k chr14 179 17 252059 252222 C 163 93.87 1366 reject_low 1 ALIGNMENT 1037 Y12-4j21.q1k chr04 33 1213 40866 42056 F 1181 96.87 1337 accept 0 ALIGNMENT 919 Y12-4j21.p1k chr04 1219 17 43031 44228 C 1203 93.60 1366 accept 0 ALIGNMENT 1020 Y12-4j22.p1k chr08 16 1232 8776 9999 F 1217 95.97 1339 accept 0 ALIGNMENT 924 Y12-4j22.q1k chr08 1107 36 13234 14318 C 1072 96.74 1326 accept 0 ALIGNMENT 961 Y12-4j23.p1k chr04 1078 25 858724 859783 C 1054 97.53 1310 accept_chi 0 ALIGNMENT 908 Y12-4j23.q1k chr04 36 1099 858724 859790 F 1064 95.39 1277 accept_chi 1 ALIGNMENT 0 Y12-4k01.q1k chr06 831 916 115162 115161 F 86 0.00 1352 accept 0 ALIGNMENT 758 Y12-4k01.q1k chr06 35 830 114366 115162 F 796 99.25 1352 accept 0 ALIGNMENT 185 Y12-4k01.q1k chr06 793 1031 115155 115391 F 239 93.31 1352 reject_low 1 ALIGNMENT 974 Y12-4k01.p1k chr06 1182 14 116106 117286 C 1169 95.30 1353 accept 0 ALIGNMENT 0 Y12-4k01.q1k chr06 62 792 115155 115154 F 731 0.00 1352 reject_low 1 ALIGNMENT 703 Y12-4k02.p1k chr02 313 1180 686602 687490 F 868 94.93 1353 accept 0 ALIGNMENT 892 Y12-4k02.q1k chr02 1015 31 690091 691090 C 985 97.97 1290 accept 0 ALIGNMENT 951 Y12-4k03.q1k chr12 1226 34 246456 247658 C 1193 94.05 1361 accept 0 ALIGNMENT 940 Y12-4k03.p1k chr12 23 1075 243546 244606 F 1053 98.58 1358 accept 0 ALIGNMENT 0 Y12-4k04.p1k chr06 979 62 31730 31729 C 918 0.00 1420 reject_low 4 ALIGNMENT 72 Y12-4k04.p1k chr06 1083 980 31625 31729 C 104 91.35 1420 reject_low 4 ALIGNMENT 0 Y12-4k04.q1k chr12 643 62 490544 490543 C 582 0.00 1409 reject_low 3 ALIGNMENT 1053 Y12-4k04.q1k chr12 1190 37 452021 453182 C 1154 97.23 1409 reject_low 2 ALIGNMENT 442 Y12-4k04.q1k chr12 1190 644 489989 490543 C 547 93.78 1409 reject_low 3 ALIGNMENT 1028 Y12-4k04.p1k chr12 16 1216 458341 459548 F 1201 96.92 1420 accept 0 ALIGNMENT 1053 Y12-4k04.q1k chr12 1190 37 461158 462319 C 1154 97.23 1409 accept 0 ALIGNMENT 1028 Y12-4k04.p1k chr12 16 1216 467478 468685 F 1201 96.92 1420 reject_low 1 ALIGNMENT 963 Y12-4k05.p1k chr12 1159 16 308486 309639 C 1144 96.07 1407 accept 0 ALIGNMENT 992 Y12-4k05.q1k chr12 38 1285 304724 305985 F 1248 95.11 1375 accept 0 ALIGNMENT 988 Y12-4k06.p1k chr02 16 1132 294721 295852 F 1117 97.31 1379 accept 0 ALIGNMENT 997 Y12-4k06.q1k chr02 1217 32 298804 300011 C 1186 95.53 1389 accept 0 ALIGNMENT 1013 Y12-4k07.p1k chr11 1254 18 429852 431104 C 1237 95.63 1441 accept 0 ALIGNMENT 1048 Y12-4k07.q1k chr11 37 1277 425237 426476 F 1241 95.89 1395 accept 0 ALIGNMENT 943 Y12-4k08.q1k chr06 31 1115 47656 48756 F 1085 96.13 1346 accept 0 ALIGNMENT 1011 Y12-4k08.p1k chr06 1167 18 52067 53230 C 1150 97.65 1417 accept 0 ALIGNMENT 941 Y12-4k09.p1k chr07 1104 14 63434 64539 C 1091 97.53 1376 accept 0 ALIGNMENT 923 Y12-4k09.q1k chr07 36 1127 58953 60058 F 1092 96.79 1342 accept 0 ALIGNMENT 1036 Y12-4k10.p1k chr07 19 1208 54594 55787 F 1190 95.88 1426 accept 0 ALIGNMENT 1034 Y12-4k10.q1k chr07 1189 32 57741 58900 C 1158 96.46 1388 accept 0 ALIGNMENT 921 Y12-4k11.q1k chr14 39 1063 427381 428415 F 1025 96.98 1304 accept 0 ALIGNMENT 938 Y12-4k11.p1k chr14 1094 15 430434 431529 C 1080 97.04 1373 accept 0 ALIGNMENT 926 Y12-4k12.p1k chr04 1205 15 802984 804179 C 1191 93.79 1433 ambiguous_trans_ua 3 ALIGNMENT 577 Y12-4k12.p1k chr12 15 1134 219720 220844 F 1120 85.45 1433 ambiguous_trans_ua 21 ALIGNMENT 593 Y12-4k12.p1k chr04 15 1081 991354 992426 F 1067 86.41 1433 ambiguous_trans 16 ALIGNMENT 0 Y12-4k12.p1k chr01 62 955 160239 160238 F 894 0.00 1433 ambiguous_trans 25 ALIGNMENT 745 Y12-4k12.p1k chr14 15 1205 101243 102439 F 1191 88.92 1433 ambiguous_trans 4 ALIGNMENT 0 Y12-4k12.p1k chr13 998 62 202214 202213 C 937 0.00 1433 ambiguous_trans 27 ALIGNMENT 991 Y12-4k12.p1k chr02 1205 15 221124 222322 C 1191 95.55 1433 ambiguous_trans 1 ALIGNMENT 113 Y12-4k12.p1k chr13 956 1205 357004 357251 F 250 84.40 1433 ambiguous_trans 23 ALIGNMENT 622 Y12-4k12.p1k chr05 15 1134 448031 449155 F 1120 86.43 1433 ambiguous_trans 8 ALIGNMENT 580 Y12-4k12.p1k chr13 15 1134 377335 378459 F 1120 85.54 1433 ambiguous_trans 20 ALIGNMENT 598 Y12-4k12.p1k chr13 1205 15 184254 185450 C 1191 84.63 1433 ambiguous_trans 5 ALIGNMENT 0 Y12-4k12.p1k chr13 62 955 357004 357003 F 894 0.00 1433 ambiguous_trans 23 ALIGNMENT 0 Y12-4k12.p1k chr13 62 977 372718 372717 F 916 0.00 1433 ambiguous_trans 26 ALIGNMENT 622 Y12-4k12.p1k chr12 15 1134 480613 481737 F 1120 86.43 1433 ambiguous_trans 9 ALIGNMENT 566 Y12-4k12.p1k chr07 15 1081 566482 567554 F 1067 85.75 1433 ambiguous_trans 22 ALIGNMENT 69 Y12-4k12.p1k chr13 1134 999 202080 202213 C 136 86.76 1433 ambiguous_trans 27 ALIGNMENT 90 Y12-4k12.p1k chr01 956 1134 160239 160414 F 179 86.59 1433 ambiguous_trans 25 ALIGNMENT 616 Y12-4k12.p1k chr10 1134 15 472539 473663 C 1120 86.25 1433 ambiguous_trans 11 ALIGNMENT 0 Y12-4k12.p1k chr13 977 62 190062 190061 C 916 0.00 1433 ambiguous_trans 24 ALIGNMENT 584 Y12-4k12.p1k chr10 1081 15 478175 479247 C 1067 86.22 1433 ambiguous_trans_ua 17 ALIGNMENT 592 Y12-4k12.p1k chr02 1205 15 259660 260856 C 1191 84.47 1433 ambiguous_trans 7 ALIGNMENT 583 Y12-4k12.p1k chr04 1134 15 1095924 1097048 C 1120 85.36 1433 ambiguous_trans 18 ALIGNMENT 598 Y12-4k12.p1k chr15 1134 15 117864 118988 C 1120 85.71 1433 ambiguous_trans 15 ALIGNMENT 613 Y12-4k12.p1k chr16 15 1134 855264 856388 F 1120 86.16 1433 ambiguous_trans 14 ALIGNMENT 91 Y12-4k12.p1k chr13 1205 978 189836 190061 C 228 82.89 1433 ambiguous_trans 24 ALIGNMENT 619 Y12-4k12.p1k chr01 15 1134 164878 166002 F 1120 86.43 1433 ambiguous_trans 10 ALIGNMENT 616 Y12-4k12.p1k chr13 1134 15 196493 197617 C 1120 86.25 1433 ambiguous_trans 12 ALIGNMENT 581 Y12-4k12.p1k chr12 1081 15 651036 652108 C 1067 86.04 1433 ambiguous_trans 19 ALIGNMENT 78 Y12-4k12.p1k chr13 978 1134 372718 372871 F 157 86.62 1433 ambiguous_trans 26 ALIGNMENT 613 Y12-4k12.p1k chr07 1134 15 535926 537050 C 1120 86.25 1433 ambiguous_trans 13 ALIGNMENT 598 Y12-4k12.p1k chr15 1205 15 594905 596101 C 1191 84.63 1433 ambiguous_trans 6 ALIGNMENT 1040 Y12-4k12.q1k chr11 36 1252 80890 82122 F 1217 95.48 1392 accept 0 ALIGNMENT 984 Y12-4k12.p1k chr13 15 1205 361637 362833 F 1191 95.38 1433 ambiguous_trans 2 ALIGNMENT 0 Y12-4k13.p1k chr12 62 287 451419 451418 F 226 0.00 1389 reject_low 1 ALIGNMENT 1052 Y12-4k13.q1k chr12 1311 38 463193 464474 C 1274 94.74 1376 accept 0 ALIGNMENT 397 Y12-4k13.p1k chr12 658 1169 489754 490269 F 512 93.75 1389 reject_low 2 ALIGNMENT 730 Y12-4k13.p1k chr12 288 1169 451419 452301 F 882 95.69 1389 reject_low 1 ALIGNMENT 0 Y12-4k13.p1k chr12 62 657 489754 489753 F 596 0.00 1389 reject_low 2 ALIGNMENT 938 Y12-4k13.p1k chr12 21 1169 460274 461438 F 1149 95.30 1389 accept 0 ALIGNMENT 1052 Y12-4k13.q1k chr12 1311 38 454056 455337 C 1274 94.74 1376 reject_low 1 ALIGNMENT 0 Y12-4k14.p1k chr15 294 835 663886 663885 F 542 0.00 1402 reject_low 14 ALIGNMENT 83 Y12-4k14.p1k chr11 210 293 307780 307863 F 84 100.00 1402 reject_low 4 ALIGNMENT 0 Y12-4k14.p1k chr11 294 835 307863 307862 F 542 0.00 1402 reject_low 4 ALIGNMENT 78 Y12-4k14.p1k chr07 293 213 823486 823566 C 81 98.77 1402 reject_low 10 ALIGNMENT 78 Y12-4k14.p1k chr13 212 293 586628 586709 F 82 98.78 1402 reject_low 8 ALIGNMENT 0 Y12-4k14.q1k chr15 767 903 105710 105709 F 137 0.00 1436 reject_low 1 ALIGNMENT 0 Y12-4k14.p1k chr13 62 211 586628 586627 F 150 0.00 1402 reject_low 8 ALIGNMENT 0 Y12-4k14.p1k chr10 835 293 378277 378276 C 543 0.00 1402 reject_low 6 ALIGNMENT 77 Y12-4k14.p1k chr12 213 292 687855 687934 F 80 98.75 1402 reject_low 11 ALIGNMENT 78 Y12-4k14.p1k chr07 213 293 412291 412371 F 81 98.77 1402 reject_low 9 ALIGNMENT 0 Y12-4k14.p1k chr08 310 480 85385 92123 F 171 0.00 1402 accept_trans 0 ALIGNMENT 0 Y12-4k14.p1k chr13 62 211 372437 372436 F 150 0.00 1402 reject_low 2 ALIGNMENT 0 Y12-4k14.p1k chr13 306 835 372529 372528 F 530 0.00 1402 reject_low 2 ALIGNMENT 0 Y12-4k14.p1k chr11 62 209 307780 307779 F 148 0.00 1402 reject_low 4 ALIGNMENT 0 Y12-4k14.p1k chr12 62 212 687855 687854 F 151 0.00 1402 reject_low 11 ALIGNMENT 0 Y12-4k14.p1k chr13 294 835 586709 586708 F 542 0.00 1402 reject_low 8 ALIGNMENT 78 Y12-4k14.p1k chr05 294 213 469450 469531 C 82 98.78 1402 reject_low 7 ALIGNMENT 83 Y12-4k14.p1k chr07 202 293 73810 73902 F 92 97.83 1402 reject_low 3 ALIGNMENT 81 Y12-4k14.p1k chr10 292 212 378276 378356 C 81 100.00 1402 reject_low 6 ALIGNMENT 82 Y12-4k14.p1k chr05 292 210 438696 438778 C 83 100.00 1402 reject_low 5 ALIGNMENT 0 Y12-4k14.p1k chr07 835 294 823487 823486 C 542 0.00 1402 reject_low 10 ALIGNMENT 0 Y12-4k14.p1k chr05 835 295 469451 469450 C 541 0.00 1402 reject_low 7 ALIGNMENT 77 Y12-4k14.p1k chr11 292 216 379323 379399 C 77 100.00 1402 reject_low 12 ALIGNMENT 0 Y12-4k14.q1k chr15 62 724 105669 105668 F 663 0.00 1436 reject_low 1 ALIGNMENT 0 Y12-4k14.p1k chr07 294 835 412371 412370 F 542 0.00 1402 reject_low 9 ALIGNMENT 0 Y12-4k14.p1k chr13 293 835 420660 420659 F 543 0.00 1402 reject_low 13 ALIGNMENT 0 Y12-4k14.p1k chr07 62 201 73810 73809 F 140 0.00 1402 reject_low 3 ALIGNMENT 0 Y12-4k14.p1k chr10 211 62 378357 378356 C 150 0.00 1402 reject_low 6 ALIGNMENT 1078 Y12-4k14.q1k chr08 1244 34 95341 96554 C 1211 96.61 1436 accept_trans 0 ALIGNMENT 83 Y12-4k14.p1k chr13 212 305 372437 372529 F 94 96.81 1402 reject_low 2 ALIGNMENT 0 Y12-4k14.p1k chr07 212 62 823567 823566 C 151 0.00 1402 reject_low 10 ALIGNMENT 0 Y12-4k14.p1k chr15 62 219 663813 663812 F 158 0.00 1402 reject_low 14 ALIGNMENT 0 Y12-4k14.p1k chr05 209 62 438779 438778 C 148 0.00 1402 reject_low 5 ALIGNMENT 0 Y12-4k14.p1k chr11 835 293 379324 379323 C 543 0.00 1402 reject_low 12 ALIGNMENT 544 Y12-4k14.p1k chr08 481 1191 92124 92835 F 711 93.81 1402 accept_trans 0 ALIGNMENT 242 Y12-4k14.p1k chr08 35 309 85107 85384 F 275 97.45 1402 accept_trans 0 ALIGNMENT 0 Y12-4k14.p1k chr11 215 62 379400 379399 C 154 0.00 1402 reject_low 12 ALIGNMENT 0 Y12-4k14.p1k chr12 293 835 687934 687933 F 543 0.00 1402 reject_low 11 ALIGNMENT 74 Y12-4k14.p1k chr15 220 293 663813 663886 F 74 100.00 1402 reject_low 14 ALIGNMENT 0 Y12-4k14.p1k chr05 212 62 469532 469531 C 151 0.00 1402 reject_low 7 ALIGNMENT 0 Y12-4k14.p1k chr13 62 213 420582 420581 F 152 0.00 1402 reject_low 13 ALIGNMENT 0 Y12-4k14.p1k chr07 62 212 412291 412290 F 151 0.00 1402 reject_low 9 ALIGNMENT 76 Y12-4k14.p1k chr13 214 292 420582 420660 F 79 98.73 1402 reject_low 13 ALIGNMENT 0 Y12-4k14.p1k chr07 294 835 73902 73901 F 542 0.00 1402 reject_low 3 ALIGNMENT 26 Y12-4k14.q1k chr15 725 766 105669 105710 F 42 88.10 1436 reject_low 1 ALIGNMENT 0 Y12-4k14.p1k chr05 835 293 438697 438696 C 543 0.00 1402 reject_low 5 ALIGNMENT 930 Y12-4k15.p1k chr14 1131 12 599706 600813 C 1120 95.71 1452 reject_low 1 ALIGNMENT 0 Y12-4k15.p1k chr14 1181 1132 599639 599705 C 50 0.00 1452 reject_low 1 ALIGNMENT 964 Y12-4k15.q1k chr14 1128 36 572977 574078 C 1093 96.43 1336 accept 0 ALIGNMENT 34 Y12-4k15.p1k chr14 1360 1182 599448 599638 C 179 77.09 1452 reject_low 1 ALIGNMENT 961 Y12-4k15.q1k chr14 43 1128 598161 599254 F 1086 96.50 1336 reject_low 1 ALIGNMENT 987 Y12-4k15.p1k chr14 12 1333 571440 572751 F 1322 93.42 1452 accept 0 ALIGNMENT 915 Y12-4k16.q1k chr12 1111 40 111255 112345 C 1072 95.62 1370 accept 0 ALIGNMENT 869 Y12-4k16.p1k chr12 28 1058 107356 108400 F 1031 96.02 1356 accept 0 ALIGNMENT 1033 Y12-4k17.q1k chr02 1181 34 596457 597610 C 1148 98.08 1323 accept 0 ALIGNMENT 0 Y12-4k17.p1k chr16 327 850 378003 378002 F 524 0.00 1390 reject_low 1 ALIGNMENT 1058 Y12-4k17.p1k chr02 17 1235 592113 593334 F 1219 96.64 1390 accept 0 ALIGNMENT 291 Y12-4k17.p1k chr16 17 326 377694 378003 F 310 98.39 1390 reject_low 1 ALIGNMENT 51 Y12-4k18.q1k chr02 765 674 464005 464096 C 92 98.91 1381 reject_low 2 ALIGNMENT 0 Y12-4k18.q1k chr02 773 849 780457 780456 F 77 0.00 1381 reject_low 3 ALIGNMENT 0 Y12-4k18.q1k chr02 757 849 72406 72405 F 93 0.00 1381 reject_low 8 ALIGNMENT 0 Y12-4k18.q1k chr15 717 62 1036175 1036174 C 656 0.00 1381 reject_low 7 ALIGNMENT 29 Y12-4k18.q1k chr15 769 688 822903 822984 C 82 91.46 1381 reject_low 5 ALIGNMENT 0 Y12-4k18.q1k chr02 849 766 464006 464005 C 84 0.00 1381 reject_low 2 ALIGNMENT 949 Y12-4k18.p1k chr15 1158 18 239035 240161 C 1141 96.32 1525 accept 0 ALIGNMENT 0 Y12-4k18.q1k chr15 849 763 1036131 1036130 C 87 0.00 1381 reject_low 7 ALIGNMENT 0 Y12-4k18.q1k chr09 714 62 169508 169507 C 653 0.00 1381 reject_low 6 ALIGNMENT 0 Y12-4k18.q1k chr02 673 62 464097 464096 C 612 0.00 1381 reject_low 2 ALIGNMENT 25 Y12-4k18.q1k chr09 774 715 169448 169507 C 60 91.67 1381 reject_low 6 ALIGNMENT 22 Y12-4k18.q1k chr02 695 756 72345 72406 F 62 95.16 1381 reject_low 8 ALIGNMENT 0 Y12-4k18.q1k chr02 740 849 72407 72406 F 110 0.00 1381 reject_low 4 ALIGNMENT 0 Y12-4k18.q1k chr15 849 770 822904 822903 C 80 0.00 1381 reject_low 5 ALIGNMENT 0 Y12-4k18.q1k chr02 62 694 72345 72344 F 633 0.00 1381 reject_low 8 ALIGNMENT 643 Y12-4k18.q1k chr15 30 708 234731 235410 F 679 98.82 1381 accept 0 ALIGNMENT 37 Y12-4k18.q1k chr02 674 772 780359 780457 F 99 91.92 1381 reject_low 3 ALIGNMENT 295 Y12-4k18.q1k chr15 737 1211 235376 235866 F 475 89.26 1381 reject_low 1 ALIGNMENT 0 Y12-4k18.q1k chr02 62 675 72344 72343 F 614 0.00 1381 reject_low 4 ALIGNMENT 34 Y12-4k18.q1k chr02 676 739 72344 72407 F 64 100.00 1381 reject_low 4 ALIGNMENT 0 Y12-4k18.q1k chr02 62 673 780359 780358 F 612 0.00 1381 reject_low 3 ALIGNMENT 0 Y12-4k18.q1k chr15 687 62 822985 822984 C 626 0.00 1381 reject_low 5 ALIGNMENT 0 Y12-4k18.q1k chr09 849 775 169449 169448 C 75 0.00 1381 reject_low 6 ALIGNMENT 24 Y12-4k18.q1k chr15 762 718 1036130 1036174 C 45 97.78 1381 reject_low 7 ALIGNMENT 0 Y12-4k18.q1k chr15 709 849 235410 235409 F 141 0.00 1381 accept 0 ALIGNMENT 0 Y12-4k18.q1k chr15 62 736 235376 235375 F 675 0.00 1381 reject_low 1 ALIGNMENT 1069 Y12-4k19.q1k chr15 1274 32 619626 620879 C 1243 95.90 1327 accept 0 ALIGNMENT 956 Y12-4k19.p1k chr15 18 1133 615681 616811 F 1116 96.42 1349 accept 0 ALIGNMENT 0 Y12-4k20.p1k chr04 833 893 1088937 1088936 F 61 0.00 1399 reject_low 1 ALIGNMENT 1040 Y12-4k20.p1k chr08 22 1236 229887 231111 F 1215 96.71 1399 accept 0 ALIGNMENT 571 Y12-4k20.p1k chr04 22 832 1088126 1088937 F 811 91.99 1399 reject_low 1 ALIGNMENT 966 Y12-4k20.q1k chr08 1104 35 233530 234603 C 1070 97.01 1375 accept 0 ALIGNMENT 1029 Y12-4k21.q1k chr07 41 1211 119404 120587 F 1171 96.93 1312 accept 0 ALIGNMENT 978 Y12-4k21.p1k chr07 1131 17 123785 124902 C 1115 96.41 1333 accept 0 ALIGNMENT 0 Y12-4k22.p1k chr08 454 62 144522 144521 C 393 0.00 1337 reject_low 5 ALIGNMENT 0 Y12-4k22.p1k chr13 449 62 514653 514652 C 388 0.00 1337 reject_low 2 ALIGNMENT 0 Y12-4k22.p1k chr02 795 478 649336 649335 C 318 0.00 1337 reject_low 3 ALIGNMENT 0 Y12-4k22.p1k chr02 449 62 780467 780466 C 388 0.00 1337 reject_low 4 ALIGNMENT 0 Y12-4k22.p1k chr02 449 62 649363 649362 C 388 0.00 1337 reject_low 3 ALIGNMENT 21 Y12-4k22.p1k chr07 476 451 379166 379191 C 26 100.00 1337 reject_low 6 ALIGNMENT 1033 Y12-4k22.q1k chr14 34 1240 65824 67044 F 1207 95.94 1379 accept 0 ALIGNMENT 970 Y12-4k22.p1k chr14 1229 22 69274 70485 C 1208 94.70 1337 accept 0 ALIGNMENT 0 Y12-4k22.p1k chr07 450 62 379192 379191 C 389 0.00 1337 reject_low 6 ALIGNMENT 0 Y12-4k22.p1k chr13 795 479 514625 514624 C 317 0.00 1337 reject_low 2 ALIGNMENT 0 Y12-4k22.p1k chr07 795 477 379167 379166 C 319 0.00 1337 reject_low 6 ALIGNMENT 22 Y12-4k22.p1k chr02 476 450 780440 780466 C 27 100.00 1337 reject_low 4 ALIGNMENT 0 Y12-4k22.p1k chr11 795 480 566742 566741 C 316 0.00 1337 reject_low 1 ALIGNMENT 26 Y12-4k22.p1k chr11 479 452 566741 566768 C 28 100.00 1337 reject_low 1 ALIGNMENT 22 Y12-4k22.p1k chr02 477 450 649335 649362 C 28 100.00 1337 reject_low 3 ALIGNMENT 0 Y12-4k22.p1k chr08 795 479 144499 144498 C 317 0.00 1337 reject_low 5 ALIGNMENT 0 Y12-4k22.p1k chr02 795 477 780441 780440 C 319 0.00 1337 reject_low 4 ALIGNMENT 0 Y12-4k22.p1k chr11 451 62 566769 566768 C 390 0.00 1337 reject_low 1 ALIGNMENT 22 Y12-4k22.p1k chr08 478 455 144498 144521 C 24 100.00 1337 reject_low 5 ALIGNMENT 23 Y12-4k22.p1k chr13 478 450 514624 514652 C 29 96.55 1337 reject_low 2 ALIGNMENT 1039 Y12-4k24.p1k chr02 20 1162 305303 306455 F 1143 97.99 1299 accept 0 ALIGNMENT 1056 Y12-4k24.q1k chr02 1253 34 309767 310990 C 1220 96.23 1335 accept 0 ALIGNMENT 971 Y12-4l04.p1k chr04 136 1281 1450905 1452069 F 1146 96.16 1421 accept 0 ALIGNMENT 1013 Y12-4l04.q1k chr04 1166 33 1454624 1455770 C 1134 97.18 1367 accept 0 ALIGNMENT 736 Y12-4l05.q1k chr02 32 1145 647687 648811 F 1114 90.57 1341 accept 0 ALIGNMENT 555 Y12-4l05.p1k chr02 978 38 652649 653589 C 941 87.25 1402 accept 0 ALIGNMENT 775 Y12-4l06.p1k chr14 53 974 675136 676051 F 922 95.44 1363 accept 0 ALIGNMENT 887 Y12-4l06.q1k chr14 1100 30 679863 680938 C 1071 95.52 1387 accept 0 ALIGNMENT 933 Y12-4l07.p1k chr07 1272 16 11674 12927 C 1257 93.16 1476 ambiguous_tel 1 ALIGNMENT 990 Y12-4l07.q1k chr10 1279 27 361463 362699 C 1253 94.25 1417 accept 0 ALIGNMENT 975 Y12-4l09.q1k chr03 26 1120 157943 159042 F 1095 97.53 1372 accept 0 ALIGNMENT 1024 Y12-4l10.p1k chr04 1250 23 822039 823282 C 1228 96.42 1423 accept 0 ALIGNMENT 1000 Y12-4l10.q1k chr04 37 1149 817370 818494 F 1113 96.95 1398 accept 0 ALIGNMENT 956 Y12-4l11.p1k chr02 22 1133 439877 440985 F 1112 96.94 1420 accept 0 ALIGNMENT 1028 Y12-4l11.q1k chr02 1244 38 443283 444496 C 1207 95.69 1392 accept 0 ALIGNMENT 0 Y12-4l13.q1k chr10 766 965 541130 541129 F 200 0.00 1361 reject_low 27 ALIGNMENT 0 Y12-4l13.q1k chr14 62 642 96610 96609 F 581 0.00 1361 reject_low 8 ALIGNMENT 0 Y12-4l13.q1k chr01 951 965 160554 160553 F 15 0.00 1361 reject_low 3 ALIGNMENT 0 Y12-4l13.q1k chr16 965 951 62061 62060 C 15 0.00 1361 reject_low 5 ALIGNMENT 0 Y12-4l13.q1k chr05 951 965 443708 443707 F 15 0.00 1361 reject_low 6 ALIGNMENT 0 Y12-4l13.q1k chr13 62 654 357016 357015 F 593 0.00 1361 reject_low 10 ALIGNMENT 125 Y12-4l13.q1k chr02 872 643 327167 327393 C 230 87.83 1361 reject_low 20 ALIGNMENT 0 Y12-4l13.q1k chr01 951 965 166142 166141 F 15 0.00 1361 reject_low 2 ALIGNMENT 0 Y12-4l13.q1k chr13 937 965 362881 362880 F 29 0.00 1361 reject_low 7 ALIGNMENT 0 Y12-4l13.q1k chr13 62 641 362585 362584 F 580 0.00 1361 reject_low 7 ALIGNMENT 146 Y12-4l13.q1k chr08 643 936 543610 543905 F 294 85.71 1361 reject_low 11 ALIGNMENT 0 Y12-4l13.q1k chr07 654 62 402282 402281 C 593 0.00 1361 reject_low 14 ALIGNMENT 59 Y12-4l13.q1k chr03 643 764 83054 83176 F 122 86.07 1361 reject_low 24 ALIGNMENT 0 Y12-4l13.q1k chr06 710 711 137906 143869 C 0 0.00 1361 reject_low 30 ALIGNMENT 0 Y12-4l13.q1k chr07 965 937 401999 401998 C 29 0.00 1361 reject_low 14 ALIGNMENT 0 Y12-4l13.q1k chr07 62 642 817398 817397 F 581 0.00 1361 reject_low 9 ALIGNMENT 0 Y12-4l13.q1k chr16 62 642 436247 436246 F 581 0.00 1361 reject_low 29 ALIGNMENT 0 Y12-4l13.q1k chr03 62 642 83054 83053 F 581 0.00 1361 reject_low 24 ALIGNMENT 0 Y12-4l13.q1k chr14 937 965 96905 96904 F 29 0.00 1361 reject_low 8 ALIGNMENT 0 Y12-4l13.q1k chr10 62 651 541018 541017 F 590 0.00 1361 reject_low 27 ALIGNMENT 0 Y12-4l13.q1k chr08 765 965 133679 133678 F 201 0.00 1361 reject_low 28 ALIGNMENT 0 Y12-4l13.q1k chr16 937 965 850926 850925 F 29 0.00 1361 reject_low 16 ALIGNMENT 150 Y12-4l13.q1k chr13 642 936 362585 362881 F 295 86.10 1361 reject_low 7 ALIGNMENT 0 Y12-4l13.q1k chr02 965 873 327168 327167 C 93 0.00 1361 reject_low 20 ALIGNMENT 0 Y12-4l13.q1k chr16 940 965 436555 436554 F 26 0.00 1361 reject_low 29 ALIGNMENT 0 Y12-4l13.q1k chr06 965 929 137953 137952 C 37 0.00 1361 reject_low 22 ALIGNMENT 901 Y12-4l13.q1k chr08 1155 34 466340 467472 C 1122 95.54 1361 accept 0 ALIGNMENT 0 Y12-4l13.q1k chr05 62 642 443393 443392 F 581 0.00 1361 reject_low 6 ALIGNMENT 150 Y12-4l13.q1k chr13 655 936 357016 357299 F 282 86.88 1361 reject_low 10 ALIGNMENT 43 Y12-4l13.q1k chr07 781 666 817274 817387 C 116 82.76 1361 reject_low 26 ALIGNMENT 0 Y12-4l13.q1k chr16 965 932 436094 436093 C 34 0.00 1361 reject_low 25 ALIGNMENT 144 Y12-4l13.q1k chr07 936 655 401998 402281 C 282 86.17 1361 reject_low 14 ALIGNMENT 0 Y12-4l13.q1k chr01 596 965 182678 182677 F 370 0.00 1361 reject_low 1 ALIGNMENT 0 Y12-4l13.q1k chr03 965 951 82721 82720 C 15 0.00 1361 reject_low 4 ALIGNMENT 0 Y12-4l13.q1k chr06 672 62 158655 158654 C 611 0.00 1361 reject_low 21 ALIGNMENT 0 Y12-4l13.q1k chr13 662 62 184482 184481 C 601 0.00 1361 reject_low 12 ALIGNMENT 0 Y12-4l13.q1k chr03 642 62 83036 83035 C 581 0.00 1361 reject_low 4 ALIGNMENT 125 Y12-4l13.q1k chr05 939 643 138254 138553 C 297 83.16 1361 reject_low 19 ALIGNMENT 0 Y12-4l13.q1k chr08 965 922 133724 133723 C 44 0.00 1361 reject_low 18 ALIGNMENT 0 Y12-4l13.q1k chr16 62 640 850623 850622 F 579 0.00 1361 reject_low 16 ALIGNMENT 27 Y12-4l13.q1k chr16 866 939 436481 436555 F 74 81.08 1361 reject_low 29 ALIGNMENT 143 Y12-4l13.q1k chr10 907 643 204047 204313 C 265 87.17 1361 reject_low 17 ALIGNMENT 0 Y12-4l13.q1k chr06 651 62 143858 143857 C 590 0.00 1361 reject_low 23 ALIGNMENT 149 Y12-4l13.q1k chr07 643 936 817398 817693 F 294 86.05 1361 reject_low 9 ALIGNMENT 0 Y12-4l13.q1k chr03 765 965 83176 83175 F 201 0.00 1361 reject_low 24 ALIGNMENT 0 Y12-4l13.q1k chr02 642 62 327394 327393 C 581 0.00 1361 reject_low 20 ALIGNMENT 0 Y12-4l13.q1k chr10 965 908 204048 204047 C 58 0.00 1361 reject_low 17 ALIGNMENT 24 Y12-4l13.q1k chr06 712 643 143868 143937 C 70 82.86 1361|2,0 reject_low 30 ALIGNMENT 64 Y12-4l13.q1k chr06 928 652 143579 143857 C 277 78.34 1361 reject_low 23 ALIGNMENT 0 Y12-4l13.q1k chr05 965 940 138255 138254 C 26 0.00 1361 reject_low 19 ALIGNMENT 125 Y12-4l13.q1k chr06 899 673 158429 158654 C 227 87.67 1361 reject_low 21 ALIGNMENT 0 Y12-4l13.q1k chr16 816 62 436208 436207 C 755 0.00 1361 reject_low 25 ALIGNMENT 0 Y12-4l13.q1k chr02 965 937 221077 221076 C 29 0.00 1361 reject_low 15 ALIGNMENT 37 Y12-4l13.q1k chr10 652 765 541018 541130 F 114 80.70 1361 reject_low 27 ALIGNMENT 137 Y12-4l13.q1k chr03 950 643 82720 83035 C 308 84.42 1361 reject_low 4 ALIGNMENT 0 Y12-4l13.q1k chr16 851 865 436454 436480 F 15 0.00 1361 reject_low 29 ALIGNMENT 0 Y12-4l13.q1k chr08 62 642 543610 543609 F 581 0.00 1361 reject_low 11 ALIGNMENT 0 Y12-4l13.q1k chr10 965 922 540732 540731 C 44 0.00 1361 reject_low 13 ALIGNMENT 0 Y12-4l13.q1k chr06 965 929 143580 143579 C 37 0.00 1361 reject_low 23 ALIGNMENT 57 Y12-4l13.q1k chr01 530 595 182613 182678 F 66 96.97 1361 reject_low 1 ALIGNMENT 0 Y12-4l13.q1k chr06 651 62 138231 138230 C 590 0.00 1361 reject_low 22 ALIGNMENT 143 Y12-4l13.q1k chr02 936 655 221076 221361 C 282 86.17 1361 reject_low 15 ALIGNMENT 0 Y12-4l13.q1k chr08 937 965 543905 543904 F 29 0.00 1361 reject_low 11 ALIGNMENT 0 Y12-4l13.q1k chr16 642 62 62376 62375 C 581 0.00 1361 reject_low 5 ALIGNMENT 115 Y12-4l13.q1k chr16 643 850 436247 436453 F 208 87.98 1361 reject_low 29 ALIGNMENT 0 Y12-4l13.q1k chr13 937 965 357299 357298 F 29 0.00 1361 reject_low 10 ALIGNMENT 0 Y12-4l13.q1k chr06 965 900 158430 158429 C 66 0.00 1361 reject_low 21 ALIGNMENT 0 Y12-4l13.q1k chr01 62 529 182613 182612 F 468 0.00 1361 reject_low 1 ALIGNMENT 64 Y12-4l13.q1k chr06 928 652 137952 138230 C 277 78.34 1361 reject_low 22 ALIGNMENT 134 Y12-4l13.q1k chr08 921 653 133723 133992 C 269 85.50 1361 reject_low 18 ALIGNMENT 0 Y12-4l13.q1k chr08 62 713 133629 133628 F 652 0.00 1361 reject_low 28 ALIGNMENT 80 Y12-4l13.q1k chr06 921 709 137702 137907 C 213 83.10 1361|0,2 reject_low 30 ALIGNMENT 0 Y12-4l13.q1k chr01 62 642 160239 160238 F 581 0.00 1361 reject_low 3 ALIGNMENT 137 Y12-4l13.q1k chr01 643 950 160239 160554 F 308 84.42 1361 reject_low 3 ALIGNMENT 146 Y12-4l13.q1k chr13 936 663 184206 184481 C 274 86.86 1361 reject_low 12 ALIGNMENT 0 Y12-4l13.q1k chr01 62 641 165826 165825 F 580 0.00 1361 reject_low 2 ALIGNMENT 0 Y12-4l13.q1k chr02 654 62 221362 221361 C 593 0.00 1361 reject_low 15 ALIGNMENT 0 Y12-4l13.q1k chr07 665 62 817388 817387 C 604 0.00 1361 reject_low 26 ALIGNMENT 21 Y12-4l13.q1k chr08 714 764 133629 133679 F 51 82.35 1361 reject_low 28 ALIGNMENT 0 Y12-4l13.q1k chr07 937 965 817693 817692 F 29 0.00 1361 reject_low 9 ALIGNMENT 0 Y12-4l13.q1k chr10 642 62 204314 204313 C 581 0.00 1361 reject_low 17 ALIGNMENT 40 Y12-4l13.q1k chr16 931 817 436093 436207 C 115 81.74 1361 reject_low 25 ALIGNMENT 0 Y12-4l13.q1k chr13 965 937 184207 184206 C 29 0.00 1361 reject_low 12 ALIGNMENT 138 Y12-4l13.q1k chr01 642 950 165826 166142 F 309 84.47 1361 reject_low 2 ALIGNMENT 0 Y12-4l13.q1k chr06 642 62 143938 143937 C 581 0.00 1361 reject_low 30 ALIGNMENT 0 Y12-4l13.q1k chr06 965 922 137703 137702 C 44 0.00 1361 reject_low 30 ALIGNMENT 146 Y12-4l13.q1k chr10 921 645 540731 541008 C 277 86.64 1361 reject_low 13 ALIGNMENT 958 Y12-4l13.p1k chr08 22 1180 462128 463271 F 1159 95.60 1453 accept 0 ALIGNMENT 152 Y12-4l13.q1k chr14 643 936 96610 96905 F 294 86.39 1361 reject_low 8 ALIGNMENT 0 Y12-4l13.q1k chr10 644 62 541009 541008 C 583 0.00 1361 reject_low 13 ALIGNMENT 0 Y12-4l13.q1k chr05 642 62 138554 138553 C 581 0.00 1361 reject_low 19 ALIGNMENT 137 Y12-4l13.q1k chr16 950 643 62060 62375 C 308 84.42 1361 reject_low 5 ALIGNMENT 131 Y12-4l13.q1k chr05 643 950 443393 443708 F 308 83.77 1361 reject_low 6 ALIGNMENT 0 Y12-4l13.q1k chr07 965 782 817275 817274 C 184 0.00 1361 reject_low 26 ALIGNMENT 0 Y12-4l13.q1k chr08 652 62 133993 133992 C 591 0.00 1361 reject_low 18 ALIGNMENT 133 Y12-4l13.q1k chr16 641 936 850623 850926 F 296 84.46 1361 reject_low 16 ALIGNMENT 1018 Y12-4l14.p1k chr04 1252 19 274779 276018 C 1234 95.46 1410 accept 0 ALIGNMENT 991 Y12-4l14.q1k chr04 34 1177 271969 273130 F 1144 96.24 1388 accept 0 ALIGNMENT 944 Y12-4l15.q1k chr12 1118 38 454593 455694 C 1081 97.04 1378 reject_low 2 ALIGNMENT 0 Y12-4l15.p1k chr12 62 189 489754 489753 F 128 0.00 1376 reject_low 3 ALIGNMENT 1030 Y12-4l15.p1k chr12 14 1150 451608 452757 F 1137 97.63 1376 accept 0 ALIGNMENT 947 Y12-4l15.q1k chr12 1148 38 463694 464831 C 1111 96.49 1378 accept 0,1 ALIGNMENT 1030 Y12-4l15.p1k chr12 14 1150 460745 461894 F 1137 97.63 1376 accept 1 ALIGNMENT 757 Y12-4l15.p1k chr12 190 980 489754 490543 F 791 98.86 1376 reject_low 3 ALIGNMENT 972 Y12-4l16.p1k chr04 21 1189 134220 135411 F 1169 95.30 1395 accept 0 ALIGNMENT 322 Y12-4l16.p1k chr04 21 415 228217 228612 F 395 94.18 1395 reject_low 1 ALIGNMENT 0 Y12-4l16.p1k chr04 416 839 228612 228611 F 424 0.00 1395 reject_low 1 ALIGNMENT 999 Y12-4l16.q1k chr04 1182 38 138226 139382 C 1145 97.03 1384 accept 0 ALIGNMENT 827 Y12-4l17.p1k chr12 22 1123 459970 461113 F 1102 93.47 1373 accept 0 ALIGNMENT 1033 Y12-4l17.q1k chr12 1236 34 455125 456339 C 1203 95.84 1384 reject_low 1 ALIGNMENT 0 Y12-4l17.p1k chr12 62 938 489754 489753 F 877 0.00 1373 reject_low 2 ALIGNMENT 445 Y12-4l17.p1k chr12 570 1123 451419 451976 F 554 95.13 1373 reject_low 1 ALIGNMENT 124 Y12-4l17.p1k chr12 939 1123 489754 489944 F 185 90.27 1373 reject_low 2 ALIGNMENT 1036 Y12-4l17.q1k chr12 1258 34 464235 465476 C 1225 95.43 1384 accept 0 ALIGNMENT 0 Y12-4l17.p1k chr12 62 569 451419 451418 F 508 0.00 1373 reject_low 1 ALIGNMENT 21 Y12-4l18.q1k chr07 481 508 949248 949275 F 28 100.00 1417 reject_low 1 ALIGNMENT 971 Y12-4l18.p1k chr08 21 1108 336329 337424 F 1088 96.97 1362 accept 0 ALIGNMENT 1032 Y12-4l18.q1k chr08 1267 38 339311 340542 C 1230 95.45 1417 accept 0 ALIGNMENT 0 Y12-4l18.q1k chr07 509 858 949275 949274 F 350 0.00 1417 reject_low 1 ALIGNMENT 0 Y12-4l18.q1k chr07 62 480 949248 949247 F 419 0.00 1417 reject_low 1 ALIGNMENT 991 Y12-4l19.q1k chr08 1200 35 234303 235480 C 1166 95.54 1346 accept 0 ALIGNMENT 1016 Y12-4l19.p1k chr08 20 1227 229974 231189 F 1208 96.27 1371 accept 0 ALIGNMENT 0 Y12-4l19.p1k chr04 745 866 1088937 1088936 F 122 0.00 1371 reject_low 1 ALIGNMENT 499 Y12-4l19.p1k chr04 20 744 1088213 1088937 F 725 91.59 1371 reject_low 1 ALIGNMENT 1047 Y12-4l20.p1k chr10 1256 21 148048 149287 C 1236 96.12 1391 accept 0 ALIGNMENT 955 Y12-4l20.q1k chr10 34 1201 145296 146477 F 1168 94.26 1373 accept 0 ALIGNMENT 22 Y12-4l21.p1k chr05 806 741 111861 111926 C 66 78.79 1335 reject_low 1 ALIGNMENT 20 Y12-4l21.p1k chr05 1130 1096 111533 111567 C 35 88.57 1335 reject_low 1 ALIGNMENT 987 Y12-4l21.q1k chr10 1155 34 492679 493818 C 1122 97.15 1323 accept 0 ALIGNMENT 0 Y12-4l21.p1k chr05 1095 807 111568 111860 C 289 0.00 1335 reject_low 1 ALIGNMENT 966 Y12-4l21.p1k chr10 17 1162 489489 490638 F 1146 95.99 1335 accept 0 ALIGNMENT 0 Y12-4l21.p1k chr05 740 62 111927 111926 C 679 0.00 1335 reject_low 1 ALIGNMENT 979 Y12-4l22.p1k chr04 1241 23 1396743 1397953 C 1219 94.91 1360 accept 0 ALIGNMENT 906 Y12-4l22.q1k chr04 36 1031 1394285 1395291 F 996 97.69 1287 accept 0 ALIGNMENT 1013 Y12-4l23.p1k chr14 1297 15 367048 368318 C 1283 94.47 1338 accept 0 ALIGNMENT 989 Y12-4l23.q1k chr14 28 1215 362676 363862 F 1188 95.20 1314 accept 0 ALIGNMENT 781 Y12-4l24.q1k chr12 219 1197 451419 452431 F 979 94.38 1325 reject_low 1 ALIGNMENT 0 Y12-4l24.q1k chr12 62 566 489754 489753 F 505 0.00 1325 reject_low 2 ALIGNMENT 999 Y12-4l24.p1k chr12 1266 16 464115 465355 C 1251 94.40 1323 reject_bad_break 0 ALIGNMENT 26 Y12-4l24.q1k chr12 34 64 460365 460395 F 31 100.00 1325 reject_bad_break 0 ALIGNMENT 999 Y12-4l24.p1k chr12 1266 16 454978 456218 C 1251 94.40 1323 reject_low 1 ALIGNMENT 491 Y12-4l24.q1k chr12 567 1197 489754 490399 F 631 93.82 1325 reject_low 2 ALIGNMENT 0 Y12-4l24.q1k chr12 65 76 460396 460412 F 12 0.00 1325 reject_bad_break 0 ALIGNMENT 0 Y12-4l24.q1k chr12 62 218 451419 451418 F 157 0.00 1325 reject_low 1 ALIGNMENT 916 Y12-4l24.q1k chr12 77 1197 460413 461568 F 1121 95.00 1325 reject_bad_break 0 ALIGNMENT 1000 Y12-4m01.p1k chr04 16 1225 624209 625424 F 1210 95.37 1395 accept 0 ALIGNMENT 950 Y12-4m01.q1k chr04 1124 32 627709 628824 C 1093 96.89 1271 accept 0 ALIGNMENT 995 Y12-4m02.p1k chr15 19 1218 413688 414902 F 1200 95.58 1360 accept_chi 0 ALIGNMENT 1016 Y12-4m02.q1k chr12 1244 33 454101 455326 C 1212 95.46 1353 manual 2 ALIGNMENT 1018 Y12-4m02.q1k chr12 1263 33 463217 464463 C 1231 95.13 1353 manual 1 ALIGNMENT 1063 Y12-4m03.q1k chr10 1293 27 243780 245036 C 1267 95.82 1355 accept 0 ALIGNMENT 997 Y12-4m03.p1k chr10 16 1243 238913 240148 F 1228 94.87 1398 accept 0 ALIGNMENT 917 Y12-4m04.p1k chr04 1128 23 1144574 1145669 C 1106 96.56 1403 accept 0 ALIGNMENT 1028 Y12-4m04.q1k chr04 30 1170 1140581 1141728 F 1141 97.90 1328 accept 0 ALIGNMENT 1058 Y12-4m05.p1k chr04 1215 15 66599 67803 C 1201 96.50 1398 accept 0 ALIGNMENT 999 Y12-4m05.q1k chr04 30 1102 63270 64347 F 1073 98.04 1376 accept 0 ALIGNMENT 593 Y12-4m06.p1k chr13 26 918 494675 495560 F 893 90.37 1461 accept 0 ALIGNMENT 981 Y12-4m07.q1k chr16 1203 27 348082 349276 C 1177 95.84 1365 accept_chi 1 ALIGNMENT 1026 Y12-4m07.p1k chr15 14 1168 87605 88769 F 1155 97.66 1395 accept_chi 0 ALIGNMENT 985 Y12-4m08.p1k chr12 1202 15 454552 455738 C 1188 95.54 1412 reject_low 1 ALIGNMENT 735 Y12-4m08.q1k chr12 28 1078 459821 460923 F 1051 92.01 1377 accept 0 ALIGNMENT 191 Y12-4m08.q1k chr12 738 1078 451419 451786 F 341 87.68 1377 reject_low 1 ALIGNMENT 996 Y12-4m08.p1k chr12 1265 15 463622 464875 C 1251 94.48 1412 accept 0 ALIGNMENT 0 Y12-4m08.q1k chr12 62 737 451419 451418 F 676 0.00 1377 reject_low 1 ALIGNMENT 827 Y12-4m09.p1k chr07 1148 68 70207 71277 C 1081 93.25 1439 accept 0 ALIGNMENT 1063 Y12-4m09.q1k chr07 37 1269 66552 67792 F 1233 96.27 1377 accept 0 ALIGNMENT 974 Y12-4m11.p1k chr04 16 1120 267486 268608 F 1105 97.38 1380 accept 0 ALIGNMENT 989 Y12-4m11.q1k chr04 1267 42 270579 271823 C 1226 94.37 1372 accept 0 ALIGNMENT 21 Y12-4m11.q1k chr02 42 99 72348 72405 F 58 86.21 1372 reject_low 1 ALIGNMENT 0 Y12-4m11.q1k chr02 100 849 72405 72404 F 750 0.00 1372 reject_low 1 ALIGNMENT 991 Y12-4m13.q1k chr12 1182 40 869335 870480 C 1143 97.29 1364 accept 0 ALIGNMENT 1042 Y12-4m13.p1k chr12 16 1266 865502 866747 F 1251 96.08 1422 accept 0 ALIGNMENT 1018 Y12-4m14.q1k chr12 36 1196 466281 467463 F 1161 96.64 1387 reject_low 1 ALIGNMENT 1027 Y12-4m14.p1k chr12 1279 20 462080 463330 C 1260 94.84 1441 accept 0 ALIGNMENT 1018 Y12-4m14.q1k chr12 36 1196 457144 458326 F 1161 96.64 1387 accept 0 ALIGNMENT 1021 Y12-4m14.p1k chr12 1194 20 453027 454193 C 1175 96.43 1441 reject_low 2 ALIGNMENT 1017 Y12-4m15.q1k chr13 40 1175 415782 416920 F 1136 97.71 1354 accept 0 ALIGNMENT 0 Y12-4m15.p1k chr05 255 903 469532 469531 F 649 0.00 1421 reject_low 3 ALIGNMENT 0 Y12-4m15.p1k chr12 165 62 687943 687942 C 104 0.00 1421 reject_low 1 ALIGNMENT 76 Y12-4m15.p1k chr08 253 174 85288 85367 C 80 98.75 1421 reject_low 12 ALIGNMENT 0 Y12-4m15.p1k chr15 903 253 663808 663807 C 651 0.00 1421 reject_low 13 ALIGNMENT 0 Y12-4m15.p1k chr12 903 256 687854 687853 C 648 0.00 1421 reject_low 1 ALIGNMENT 0 Y12-4m15.p1k chr11 248 903 379396 379395 F 656 0.00 1421 reject_low 10 ALIGNMENT 0 Y12-4m15.p1k chr10 62 168 378271 378270 F 107 0.00 1421 reject_low 5 ALIGNMENT 0 Y12-4m15.p1k chr13 173 62 586709 586708 C 112 0.00 1421 reject_low 8 ALIGNMENT 0 Y12-4m15.p1k chr07 903 254 73823 73822 C 650 0.00 1421 reject_low 11 ALIGNMENT 76 Y12-4m15.p1k chr15 252 174 663807 663885 C 79 98.73 1421 reject_low 13 ALIGNMENT 0 Y12-4m15.p1k chr07 903 256 412290 412289 C 648 0.00 1421 reject_low 2 ALIGNMENT 79 Y12-4m15.p1k chr10 169 253 378271 378355 F 85 97.65 1421 reject_low 5 ALIGNMENT 0 Y12-4m15.p1k chr10 254 903 378355 378354 F 650 0.00 1421 reject_low 5 ALIGNMENT 79 Y12-4m15.p1k chr07 255 165 412289 412379 C 91 95.60 1421 reject_low 2 ALIGNMENT 0 Y12-4m15.p1k chr05 254 903 438775 438774 F 650 0.00 1421 reject_low 9 ALIGNMENT 79 Y12-4m15.p1k chr13 253 174 586629 586708 C 80 100.00 1421 reject_low 8 ALIGNMENT 0 Y12-4m15.p1k chr13 903 254 372439 372438 C 650 0.00 1421 reject_low 7 ALIGNMENT 0 Y12-4m15.p1k chr11 163 62 307873 307872 C 102 0.00 1421 reject_low 4 ALIGNMENT 83 Y12-4m15.p1k chr05 166 254 469444 469532 F 89 97.75 1421 reject_low 3 ALIGNMENT 0 Y12-4m15.p1k chr13 173 62 372518 372517 C 112 0.00 1421 reject_low 7 ALIGNMENT 0 Y12-4m15.p1k chr07 254 903 823566 823565 F 650 0.00 1421 reject_low 6 ALIGNMENT 0 Y12-4m15.p1k chr07 164 62 412380 412379 C 103 0.00 1421 reject_low 2 ALIGNMENT 79 Y12-4m15.p1k chr07 174 253 823487 823566 F 80 100.00 1421 reject_low 6 ALIGNMENT 0 Y12-4m15.p1k chr07 173 62 73902 73901 C 112 0.00 1421 reject_low 11 ALIGNMENT 0 Y12-4m15.p1k chr05 62 172 438695 438694 F 111 0.00 1421 reject_low 9 ALIGNMENT 76 Y12-4m15.p1k chr11 169 247 379318 379396 F 79 98.73 1421 reject_low 10 ALIGNMENT 78 Y12-4m15.p1k chr11 253 164 307783 307872 C 90 95.56 1421 reject_low 4 ALIGNMENT 0 Y12-4m15.p1k chr08 173 62 85368 85367 C 112 0.00 1421 reject_low 12 ALIGNMENT 0 Y12-4m15.p1k chr08 903 254 85289 85288 C 650 0.00 1421 reject_low 12 ALIGNMENT 1012 Y12-4m15.p1k chr13 1264 22 419561 420814 C 1243 95.33 1421 accept 0 ALIGNMENT 79 Y12-4m15.p1k chr13 253 174 372438 372517 C 80 100.00 1421 reject_low 7 ALIGNMENT 0 Y12-4m15.p1k chr07 62 173 823487 823486 F 112 0.00 1421 reject_low 6 ALIGNMENT 0 Y12-4m15.p1k chr15 173 62 663886 663885 C 112 0.00 1421 reject_low 13 ALIGNMENT 0 Y12-4m15.p1k chr11 62 168 379318 379317 F 107 0.00 1421 reject_low 10 ALIGNMENT 0 Y12-4m15.p1k chr11 903 254 307784 307783 C 650 0.00 1421 reject_low 4 ALIGNMENT 0 Y12-4m15.p1k chr13 903 254 586630 586629 C 650 0.00 1421 reject_low 8 ALIGNMENT 0 Y12-4m15.p1k chr05 62 165 469444 469443 F 104 0.00 1421 reject_low 3 ALIGNMENT 76 Y12-4m15.p1k chr07 253 174 73822 73901 C 80 98.75 1421 reject_low 11 ALIGNMENT 87 Y12-4m15.p1k chr12 255 166 687853 687942 C 90 98.89 1421 reject_low 1 ALIGNMENT 78 Y12-4m15.p1k chr05 173 253 438695 438775 F 81 98.77 1421 reject_low 9 ALIGNMENT 1040 Y12-4m17.p1k chr05 23 1204 319223 320410 F 1182 97.21 1396 accept 0 ALIGNMENT 1031 Y12-4m17.q1k chr05 1212 34 321999 323170 C 1179 96.95 1351 accept 0 ALIGNMENT 975 Y12-4m18.q1k chr15 1169 34 898286 899439 C 1136 96.65 1366 accept 0 ALIGNMENT 963 Y12-4m18.p1k chr15 17 1229 895544 896768 F 1213 95.05 1366 accept 0 ALIGNMENT 1004 Y12-4m19.p1k chr14 15 1167 112774 113943 F 1153 96.53 1355 accept 0 ALIGNMENT 1042 Y12-4m19.q1k chr14 1232 38 117422 118628 C 1195 96.40 1351 accept 0 ALIGNMENT 1007 Y12-4m20.p1k chr05 1146 21 83039 84179 C 1126 97.16 1348 accept 0 ALIGNMENT 1070 Y12-4m20.q1k chr05 38 1292 79876 81145 F 1255 96.10 1392 accept 0 ALIGNMENT 68 Y12-4m21.q1k chr15 866 974 1073349 1073457 F 109 88.07 1337 reject_low 1 ALIGNMENT 1022 Y12-4m21.p1k chr15 1221 19 1076339 1077553 C 1203 96.09 1342 reject_low 1 ALIGNMENT 0 Y12-4m21.q1k chr15 866 865 1073324 1073348 F 0 0.00 1337 reject_low 1 ALIGNMENT 764 Y12-4m21.q1k chr15 37 865 1072489 1073323 F 829 98.19 1337 reject_low 1 ALIGNMENT 1017 Y12-4m21.p1k chr16 15 1264 13577 14841 F 1250 94.80 1342 accept 0 ALIGNMENT 994 Y12-4m21.q1k chr16 1214 37 17203 18378 C 1178 96.01 1337 accept 0 ALIGNMENT 33 Y12-4m22.q1k chr02 459 556 463999 464096 F 98 84.69 1436 reject_low 1 ALIGNMENT 826 Y12-4m22.q1k chr14 1016 29 332789 333776 C 988 95.85 1436 accept 0 ALIGNMENT 0 Y12-4m22.q1k chr06 463 62 160595 160594 C 402 0.00 1436 reject_low 3 ALIGNMENT 0 Y12-4m22.q1k chr02 464 62 780463 780462 C 403 0.00 1436 reject_low 2 ALIGNMENT 903 Y12-4m22.p1k chr14 17 1156 330651 331779 F 1140 94.65 1352 accept 0 ALIGNMENT 0 Y12-4m22.q1k chr02 693 566 780363 780362 C 128 0.00 1436 reject_low 2 ALIGNMENT 23 Y12-4m22.q1k chr02 565 465 780362 780462 C 101 81.19 1436 reject_low 2 ALIGNMENT 0 Y12-4m22.q1k chr02 62 458 463999 463998 F 397 0.00 1436 reject_low 1 ALIGNMENT 0 Y12-4m22.q1k chr06 693 504 160556 160555 C 190 0.00 1436 reject_low 3 ALIGNMENT 21 Y12-4m22.q1k chr06 503 464 160555 160594 C 40 92.50 1436 reject_low 3 ALIGNMENT 0 Y12-4m22.q1k chr02 557 693 464096 464095 F 137 0.00 1436 reject_low 1 ALIGNMENT 1045 Y12-4m23.q1k chr13 37 1225 555259 556443 F 1189 97.06 1317 accept 0 ALIGNMENT 938 Y12-4m23.p1k chr13 1168 20 558434 559570 C 1149 95.65 1338 accept 0 ALIGNMENT 0 Y12-4n01.q1k chr13 632 62 587739 587738 C 571 0.00 1374 reject_low 10 ALIGNMENT 22 Y12-4n01.q1k chr16 701 742 897089 897130 F 42 97.62 1374 reject_low 12 ALIGNMENT 22 Y12-4n01.q1k chr13 742 633 587629 587738 C 110 85.45 1374 reject_low 10 ALIGNMENT 0 Y12-4n01.q1k chr16 613 62 650611 650610 C 552 0.00 1374 reject_low 8 ALIGNMENT 26 Y12-4n01.q1k chr15 691 752 1037505 1037566 F 62 93.55 1374 reject_low 9 ALIGNMENT 0 Y12-4n01.q1k chr05 680 898 142989 142988 F 219 0.00 1374 reject_low 4 ALIGNMENT 0 Y12-4n01.q1k chr09 62 633 105278 105277 F 572 0.00 1374 reject_low 5 ALIGNMENT 1034 Y12-4n01.p1k chr13 14 1199 500815 502014 F 1186 97.13 1350 accept_chi 0 ALIGNMENT 0 Y12-4n01.q1k chr09 762 898 105834 105833 F 137 0.00 1374 reject_low 7 ALIGNMENT 0 Y12-4n01.q1k chr05 62 608 142919 142918 F 547 0.00 1374 reject_low 4 ALIGNMENT 840 Y12-4n01.q1k chr04 1259 29 389889 391099 C 1231 92.53 1374 accept_chi 1 ALIGNMENT 0 Y12-4n01.q1k chr15 62 690 1037505 1037504 F 629 0.00 1374 reject_low 9 ALIGNMENT 0 Y12-4n01.q1k chr02 669 62 68351 68350 C 608 0.00 1374 reject_low 11 ALIGNMENT 0 Y12-4n01.q1k chr09 741 898 105384 105383 F 158 0.00 1374 reject_low 5 ALIGNMENT 0 Y12-4n01.q1k chr13 898 743 86943 86942 C 156 0.00 1374 reject_low 3 ALIGNMENT 0 Y12-4n01.q1k chr07 664 898 467756 467755 F 235 0.00 1374 reject_low 6 ALIGNMENT 20 Y12-4n01.q1k chr02 752 670 68268 68350 C 83 86.75 1374 reject_low 11 ALIGNMENT 0 Y12-4n01.q1k chr13 898 743 587630 587629 C 156 0.00 1374 reject_low 10 ALIGNMENT 0 Y12-4n01.q1k chr13 625 62 87059 87058 C 564 0.00 1374 reject_low 3 ALIGNMENT 22 Y12-4n01.q1k chr16 752 614 650472 650610 C 139 84.89 1374 reject_low 8 ALIGNMENT 22 Y12-4n01.q1k chr09 703 761 105776 105834 F 59 91.53 1374 reject_low 7 ALIGNMENT 0 Y12-4n01.q1k chr16 743 898 897130 897129 F 156 0.00 1374 reject_low 12 ALIGNMENT 38 Y12-4n01.q1k chr13 742 626 86942 87058 C 117 89.74 1374 reject_low 3 ALIGNMENT 0 Y12-4n01.q1k chr13 671 62 587739 587738 C 610 0.00 1374 reject_low 2 ALIGNMENT 0 Y12-4n01.q1k chr02 898 753 68269 68268 C 146 0.00 1374 reject_low 11 ALIGNMENT 0 Y12-4n01.q1k chr16 898 753 650473 650472 C 146 0.00 1374 reject_low 8 ALIGNMENT 0 Y12-4n01.q1k chr07 62 612 467706 467705 F 551 0.00 1374 reject_low 6 ALIGNMENT 39 Y12-4n01.q1k chr13 769 672 587641 587738 C 98 89.80 1374 reject_low 2 ALIGNMENT 34 Y12-4n01.q1k chr09 634 740 105278 105384 F 107 89.72 1374 reject_low 5 ALIGNMENT 0 Y12-4n01.q1k chr15 753 898 1037566 1037565 F 146 0.00 1374 reject_low 9 ALIGNMENT 0 Y12-4n01.q1k chr09 62 702 105776 105775 F 641 0.00 1374 reject_low 7 ALIGNMENT 24 Y12-4n01.q1k chr05 609 679 142919 142989 F 71 90.14 1374 reject_low 4 ALIGNMENT 0 Y12-4n01.q1k chr16 62 700 897089 897088 F 639 0.00 1374 reject_low 12 ALIGNMENT 20 Y12-4n01.q1k chr07 613 663 467706 467756 F 51 94.12 1374 reject_low 6 ALIGNMENT 0 Y12-4n01.q1k chr13 898 770 587642 587641 C 129 0.00 1374 reject_low 2 ALIGNMENT 1054 Y12-4n02.q1k chr16 32 1190 235963 237133 F 1159 98.02 1373 accept 0 ALIGNMENT 984 Y12-4n02.p1k chr16 1229 27 238893 240121 C 1203 95.18 1351 accept 0 ALIGNMENT 128 Y12-4n03.q1k chr16 371 860 100629 101108 F 490 77.14 1442 accept 0 ALIGNMENT 0 Y12-4n04.p1k chr07 571 445 287353 287352 C 127 0.00 1396 reject_low 5 ALIGNMENT 0 Y12-4n04.p1k chr07 329 98 287467 287466 C 232 0.00 1396 reject_low 5 ALIGNMENT 0 Y12-4n04.p1k chr16 320 98 56289 56288 C 223 0.00 1396 reject_low 1 ALIGNMENT 780 Y12-4n04.p1k chr10 1167 16 415121 416270 C 1152 90.89 1396 accept 0 ALIGNMENT 0 Y12-4n04.p1k chr11 98 329 302558 302557 F 232 0.00 1396 reject_low 4 ALIGNMENT 120 Y12-4n04.p1k chr13 451 324 379291 379418 C 128 98.44 1396 reject_low 3 ALIGNMENT 105 Y12-4n04.p1k chr07 444 330 287352 287466 C 115 97.39 1396 reject_low 5 ALIGNMENT 0 Y12-4n04.p1k chr13 323 98 379419 379418 C 226 0.00 1396 reject_low 3 ALIGNMENT 0 Y12-4n04.p1k chr16 571 453 56158 56157 C 119 0.00 1396 reject_low 1 ALIGNMENT 0 Y12-4n04.p1k chr11 453 571 302680 302679 F 119 0.00 1396 reject_low 4 ALIGNMENT 0 Y12-4n04.p1k chr13 571 452 379292 379291 C 120 0.00 1396 reject_low 3 ALIGNMENT 109 Y12-4n04.p1k chr11 330 452 302558 302680 F 123 96.75 1396 reject_low 4 ALIGNMENT 113 Y12-4n04.p1k chr07 461 330 878694 878825 C 132 96.21 1396 reject_low 2 ALIGNMENT 883 Y12-4n04.q1k chr10 32 1115 411892 412983 F 1084 94.74 1392 accept 0 ALIGNMENT 0 Y12-4n04.p1k chr07 329 98 878826 878825 C 232 0.00 1396 reject_low 2 ALIGNMENT 0 Y12-4n04.p1k chr07 571 462 878695 878694 C 110 0.00 1396 reject_low 2 ALIGNMENT 120 Y12-4n04.p1k chr16 452 321 56157 56288 C 132 97.73 1396 reject_low 1 ALIGNMENT 922 Y12-4n05.q1k chr16 1104 31 728906 729992 C 1074 96.74 1390 accept 0 ALIGNMENT 934 Y12-4n05.p1k chr16 16 1113 724877 725987 F 1098 96.27 1357 accept 0 ALIGNMENT 20 Y12-4n06.q1k chr09 89 119 350015 350045 F 31 90.32 1429 reject_low 2 ALIGNMENT 0 Y12-4n06.q1k chr09 62 88 350015 350014 F 27 0.00 1429 reject_low 2 ALIGNMENT 971 Y12-4n06.p1k chr12 1143 19 88744 89888 C 1125 96.53 1347 accept_chi 1 ALIGNMENT 991 Y12-4n06.q1k chr04 1125 29 1433659 1434767 C 1097 97.45 1429 accept_chi 0 ALIGNMENT 0 Y12-4n06.q1k chr09 120 790 350045 350044 F 671 0.00 1429 reject_low 2 ALIGNMENT 986 Y12-4n07.p1k chr11 18 1178 287038 288213 F 1161 96.64 1412 accept 0 ALIGNMENT 1009 Y12-4n07.q1k chr11 1149 30 288882 290012 C 1120 97.41 1397 accept 0 ALIGNMENT 1069 Y12-4n08.q1k chr09 1308 31 398615 399897 C 1278 95.23 1464 accept 0 ALIGNMENT 927 Y12-4n08.p1k chr09 17 1163 394660 395794 F 1147 95.12 1395 accept 0 ALIGNMENT 981 Y12-4n09.q1k chr12 1173 33 675173 676326 C 1141 97.02 1381 accept 0 ALIGNMENT 873 Y12-4n09.p1k chr12 17 1165 671009 672152 F 1149 94.34 1443 accept 0 ALIGNMENT 28 Y12-4n10.p1k chr04 549 622 513514 513587 F 74 82.43 1377 reject_low 58 ALIGNMENT 20 Y12-4n10.p1k chr03 765 862 90436 90532 F 98 77.55 1377 reject_low 50 ALIGNMENT 0 Y12-4n10.q1k chr05 754 62 494654 494653 C 693 0.00 1402 reject_low 44 ALIGNMENT 85 Y12-4n10.q1k chr13 755 999 200094 200339 F 245 80.82 1402 reject_low 48 ALIGNMENT 292 Y12-4n10.p1k chr10 289 623 203704 204037 F 335 98.21 1377 reject_low 49 ALIGNMENT 0 Y12-4n10.p1k chr15 727 623 664814 664813 C 105 0.00 1377 reject_low 23 ALIGNMENT 298 Y12-4n10.p1k chr15 289 621 704064 704396 F 333 98.80 1377 reject_low 5 ALIGNMENT 0 Y12-4n10.p1k chr03 622 625 168929 169019 F 4 0.00 1377 reject_low 14 ALIGNMENT 52 Y12-4n10.p1k chr10 822 989 204038 204213 F 168 80.95 1377 reject_low 49 ALIGNMENT 0 Y12-4n10.p1k chr08 764 62 92097 92096 C 703 0.00 1377 reject_low 53 ALIGNMENT 932 Y12-4n10.q1k chr14 1156 31 563781 564914 C 1126 95.74 1402 reject_low 9 ALIGNMENT 0 Y12-4n10.p1k chr01 622 727 166163 166162 F 106 0.00 1377 reject_low 32 ALIGNMENT 929 Y12-4n10.q1k chr03 31 1156 87888 89021 F 1126 95.65 1402 reject_low 4 ALIGNMENT 272 Y12-4n10.p1k chr03 296 621 168602 168928 F 326 96.93 1377 reject_low 14 ALIGNMENT 142 Y12-4n10.p1k chr03 20 198 168418 168594 F 179 95.53 1377 reject_low 14 ALIGNMENT 0 Y12-4n10.p1k chr03 62 295 124138 124137 F 234 0.00 1377 reject_low 42 ALIGNMENT 28 Y12-4n10.p1k chr03 1085 968 168596 168716 C 118 77.97 1377 reject_low 63 ALIGNMENT 81 Y12-4n10.q1k chr10 755 1087 476140 476476 F 333 77.48 1402 reject_low 47 ALIGNMENT 0 Y12-4n10.p1k chr03 727 401 84627 84626 C 327 0.00 1377 reject_low 57 ALIGNMENT 0 Y12-4n10.q1k chr13 62 754 187927 187926 F 693 0.00 1402 reject_low 39 ALIGNMENT 0 Y12-4n10.p1k chr01 622 727 160575 160574 F 106 0.00 1377 reject_low 19 ALIGNMENT 0 Y12-4n10.q1k chr04 754 62 647656 647655 C 693 0.00 1402 reject_low 38 ALIGNMENT 20 Y12-4n10.p1k chr15 862 765 704301 704397 C 98 77.55 1377 reject_low 54 ALIGNMENT 0 Y12-4n10.p1k chr04 623 727 519644 519643 F 105 0.00 1377 reject_low 26 ALIGNMENT 0 Y12-4n10.p1k chr03 727 622 90438 90437 C 106 0.00 1377 reject_low 4 ALIGNMENT 34 Y12-4n10.p1k chr03 400 310 84626 84717 C 91 81.32 1377 reject_low 57 ALIGNMENT 911 Y12-4n10.q1k chr15 31 1183 973360 974523 F 1153 94.54 1402 reject_low 8 ALIGNMENT 279 Y12-4n10.p1k chr07 624 299 811449 811773 C 326 97.85 1377 reject_low 28 ALIGNMENT 0 Y12-4n10.p1k chr10 62 288 203704 203703 F 227 0.00 1377 reject_low 49 ALIGNMENT 0 Y12-4n10.p1k chr13 622 727 168681 168680 F 106 0.00 1377 reject_low 24 ALIGNMENT 0 Y12-4n10.p1k chr08 622 727 389512 389511 F 106 0.00 1377 reject_low 22 ALIGNMENT 207 Y12-4n10.p1k chr01 296 621 160246 160575 F 326 90.49 1377 reject_low 19 ALIGNMENT 860 Y12-4n10.q1k chr02 31 1103 32719 33795 F 1073 94.69 1402 reject_low 13 ALIGNMENT 20 Y12-4n10.p1k chr07 765 862 817078 817174 F 98 77.55 1377 reject_low 52 ALIGNMENT 0 Y12-4n10.p1k chr07 727 622 817080 817079 C 106 0.00 1377 accept_trans 0 ALIGNMENT 893 Y12-4n10.q1k chr04 1103 31 515489 516565 C 1073 95.71 1402 reject_low 6 ALIGNMENT 86 Y12-4n10.q1k chr05 999 755 445309 445554 C 245 80.82 1402 reject_low 16 ALIGNMENT 0 Y12-4n10.p1k chr04 622 727 514016 514015 F 106 0.00 1377 reject_low 6 ALIGNMENT 279 Y12-4n10.p1k chr03 621 289 84810 85141 C 333 97.00 1377 reject_low 29 ALIGNMENT 956 Y12-4n10.q1k chr12 1210 34 977425 978615 C 1177 95.33 1402 reject_low 3 ALIGNMENT 914 Y12-4n10.q1k chr12 31 1156 944267 945400 F 1126 95.20 1402 reject_low 11 ALIGNMENT 298 Y12-4n10.p1k chr12 285 627 731666 732008 F 343 97.96 1377 reject_low 18 ALIGNMENT 93 Y12-4n10.q1k chr13 755 1087 187927 188263 F 333 78.68 1402 reject_low 39 ALIGNMENT 92 Y12-4n10.p1k chr03 1085 766 124132 124462 C 320 79.69 1377 reject_low 15 ALIGNMENT 0 Y12-4n10.p1k chr03 288 62 85142 85141 C 227 0.00 1377 reject_low 29 ALIGNMENT 43 Y12-4n10.p1k chr01 626 678 182910 182962 F 53 94.34 1377 reject_bad_break 1 ALIGNMENT 0 Y12-4n10.p1k chr09 727 622 246218 246217 C 106 0.00 1377 reject_low 21 ALIGNMENT 0 Y12-4n10.p1k chr03 727 622 84811 84810 C 106 0.00 1377 reject_low 29 ALIGNMENT 0 Y12-4n10.p1k chr09 287 62 246551 246550 C 226 0.00 1377 reject_low 21 ALIGNMENT 0 Y12-4n10.p1k chr03 62 193 168929 168928 F 132 0.00 1377 reject_low 31 ALIGNMENT 107 Y12-4n10.p1k chr03 623 299 151516 151838 C 325 81.54 1377 reject_low 60 ALIGNMENT 20 Y12-4n10.p1k chr03 629 594 169194 169229 C 36 88.89 1377 reject_low 63 ALIGNMENT 0 Y12-4n10.q1k chr13 754 62 359161 359160 C 693 0.00 1402 reject_low 43 ALIGNMENT 0 Y12-4n10.p1k chr07 423 727 817532 817531 F 305 0.00 1377 reject_low 55 ALIGNMENT 0 Y12-4n10.p1k chr10 298 62 538339 538338 C 237 0.00 1377 reject_low 30 ALIGNMENT 33 Y12-4n10.p1k chr07 1063 927 817422 817563 C 137 78.10 1377 reject_low 35 ALIGNMENT 21 Y12-4n10.p1k chr03 862 764 168833 168930 C 99 77.78 1377 reject_low 63 ALIGNMENT 0 Y12-4n10.p1k chr05 62 288 431486 431485 F 227 0.00 1377 reject_low 16 ALIGNMENT 69 Y12-4n10.p1k chr03 913 766 142926 143077 C 148 86.49 1377 reject_low 60,61 ALIGNMENT 0 Y12-4n10.p1k chr10 364 62 204237 204236 C 303 0.00 1377 reject_low 56 ALIGNMENT 0 Y12-4n10.p1k chr03 62 764 90436 90435 F 703 0.00 1377 reject_low 50 ALIGNMENT 0 Y12-4n10.p1k chr10 624 821 204038 204037 F 198 0.00 1377 reject_low 49 ALIGNMENT 914 Y12-4n10.q1k chr15 1156 31 705812 706945 C 1126 95.20 1402 reject_low 5 ALIGNMENT 65 Y12-4n10.p1k chr07 309 422 817418 817532 F 114 87.72 1377 reject_low 55 ALIGNMENT 95 Y12-4n10.q1k chr04 1164 755 880038 880456 C 410 77.32 1402 reject_low 36 ALIGNMENT 0 Y12-4n10.p1k chr05 283 62 62480 62479 C 222 0.00 1377 reject_low 17 ALIGNMENT 0 Y12-4n10.p1k chr07 727 625 811450 811449 C 103 0.00 1377 reject_low 28 ALIGNMENT 207 Y12-4n10.p1k chr01 296 621 165834 166163 F 326 90.49 1377 reject_low 32 ALIGNMENT 0 Y12-4n10.p1k chr01 679 727 182962 182961 F 49 0.00 1377 reject_bad_break 1 ALIGNMENT 0 Y12-4n10.q1k chr01 754 62 162401 162400 C 693 0.00 1402 reject_low 19 ALIGNMENT 0 Y12-4n10.p1k chr03 279 62 149815 149814 C 218 0.00 1377 reject_low 61 ALIGNMENT 64 Y12-4n10.p1k chr03 340 622 142798 143078 F 283 77.39 1377 reject_low 59 ALIGNMENT 44 Y12-4n10.p1k chr04 842 766 513510 513586 C 77 89.61 1377 reject_low 34 ALIGNMENT 0 Y12-4n10.p1k chr03 593 62 169230 169229 C 532 0.00 1377 reject_low 63 ALIGNMENT 286 Y12-4n10.p1k chr04 299 621 513695 514016 F 323 98.76 1377 reject_low 6 ALIGNMENT 0 Y12-4n10.p1k chr07 926 62 817564 817563 C 865 0.00 1377 reject_low 35 ALIGNMENT 61 Y12-4n10.p1k chr10 567 365 204036 204236 C 203 80.79 1377 reject_low 56 ALIGNMENT 20 Y12-4n10.p1k chr01 862 765 160480 160576 C 98 77.55 1377 reject_low 62 ALIGNMENT 0 Y12-4n10.p1k chr03 288 62 90769 90768 C 227 0.00 1377 reject_low 4 ALIGNMENT 956 Y12-4n10.q1k chr07 1210 31 570432 571625 C 1180 95.25 1402 reject_low 2 ALIGNMENT 307 Y12-4n10.p1k chr08 289 621 389180 389512 F 333 99.70 1377 reject_low 22 ALIGNMENT 309 Y12-4n10.p1k chr05 625 284 62138 62479 C 342 99.12 1377 reject_low 17 ALIGNMENT 0 Y12-4n10.p1k chr08 622 727 92095 92094 F 106 0.00 1377 reject_low 27 ALIGNMENT 55 Y12-4n10.p1k chr03 194 280 168929 169015 F 87 89.66 1377 reject_low 31 ALIGNMENT 0 Y12-4n10.p1k chr15 288 62 665147 665146 C 227 0.00 1377 reject_low 23 ALIGNMENT 88 Y12-4n10.q1k chr10 755 999 481724 481969 F 245 81.22 1402 reject_low 46 ALIGNMENT 0 Y12-4n10.p1k chr03 967 863 168717 168832 C 105 0.00 1377 reject_low 63 ALIGNMENT 301 Y12-4n10.p1k chr13 289 621 168349 168681 F 333 99.10 1377 reject_low 24 ALIGNMENT 0 Y12-4n10.p1k chr04 62 548 513514 513513 F 487 0.00 1377 reject_low 58 ALIGNMENT 281 Y12-4n10.p1k chr10 622 299 538016 538338 C 324 98.15 1377 reject_low 30 ALIGNMENT 0 Y12-4n10.p1k chr08 62 288 389180 389179 F 227 0.00 1377 reject_low 22 ALIGNMENT 22 Y12-4n10.p1k chr03 766 796 169202 169232 F 31 93.55 1377 reject_low 14,31 ALIGNMENT 0 Y12-4n10.p1k chr04 623 727 513587 513586 F 105 0.00 1377 reject_low 58 ALIGNMENT 0 Y12-4n10.p1k chr04 764 62 514018 514017 C 703 0.00 1377 reject_low 51 ALIGNMENT 0 Y12-4n10.p1k chr10 727 568 204037 204036 C 160 0.00 1377 reject_low 56 ALIGNMENT 0 Y12-4n10.p1k chr03 199 295 168595 168601 F 97 0.00 1377 reject_low 14 ALIGNMENT 0 Y12-4n10.p1k chr15 62 288 704064 704063 F 227 0.00 1377 reject_low 5 ALIGNMENT 0 Y12-4n10.p1k chr03 622 727 124462 124461 F 106 0.00 1377 reject_low 42 ALIGNMENT 20 Y12-4n10.p1k chr04 862 765 513921 514017 C 98 77.55 1377 reject_low 51 ALIGNMENT 0 Y12-4n10.q1k chr04 754 62 880457 880456 C 693 0.00 1402 reject_low 36 ALIGNMENT 180 Y12-4n10.p1k chr01 20 280 182648 182905 F 261 91.95 1377 reject_bad_break 1 ALIGNMENT 0 Y12-4n10.q1k chr10 62 754 481724 481723 F 693 0.00 1402 reject_low 46 ALIGNMENT 0 Y12-4n10.p1k chr15 622 727 710024 710023 F 106 0.00 1377 reject_low 25 ALIGNMENT 0 Y12-4n10.p1k chr01 926 62 165993 165992 C 865 0.00 1377 reject_low 33 ALIGNMENT 88 Y12-4n10.q1k chr13 1087 755 358824 359160 C 333 78.08 1402 reject_low 43 ALIGNMENT 0 Y12-4n10.p1k chr12 62 284 731666 731665 F 223 0.00 1377 reject_low 18 ALIGNMENT 0 Y12-4n10.p1k chr05 727 626 62139 62138 C 102 0.00 1377 reject_low 17 ALIGNMENT 0 Y12-4n10.p1k chr03 765 624 143078 151515 C 142 0.00 1377 reject_low 60 ALIGNMENT 0 Y12-4n10.q1k chr10 62 754 476140 476139 F 693 0.00 1402 reject_low 47 ALIGNMENT 0 Y12-4n10.p1k chr12 288 62 941521 941520 C 227 0.00 1377 reject_low 20 ALIGNMENT 0 Y12-4n10.p1k chr01 281 625 182906 182909 F 345 0.00 1377 reject_bad_break 1 ALIGNMENT 0 Y12-4n10.p1k chr03 670 765 169064 169201 F 96 0.00 1377 reject_low 14,31 ALIGNMENT 0 Y12-4n10.p1k chr12 628 727 732008 732007 F 100 0.00 1377 reject_low 18 ALIGNMENT 0 Y12-4n10.p1k chr04 62 298 513695 513694 F 237 0.00 1377 reject_low 6 ALIGNMENT 73 Y12-4n10.p1k chr03 588 280 149513 149814 C 309 78.64 1377 reject_low 61 ALIGNMENT 0 Y12-4n10.p1k chr03 309 62 84718 84717 C 248 0.00 1377 reject_low 57 ALIGNMENT 83 Y12-4n10.p1k chr03 766 1074 151518 151836 F 309 79.61 1377 reject_low 59 ALIGNMENT 91 Y12-4n10.q1k chr16 1087 755 852451 852787 C 333 78.38 1402 reject_low 41 ALIGNMENT 0 Y12-4n10.p1k chr03 62 339 142798 142797 F 278 0.00 1377 reject_low 59 ALIGNMENT 0 Y12-4n10.p1k chr07 311 62 817388 817387 C 250 0.00 1377 accept_trans 0 ALIGNMENT 920 Y12-4n10.q1k chr04 31 1183 984243 985406 F 1153 94.80 1402 reject_low 7 ALIGNMENT 41 Y12-4n10.p1k chr03 626 669 169020 169063 F 44 97.73 1377 reject_low 14,31 ALIGNMENT 39 Y12-4n10.p1k chr01 1085 927 160240 160404 C 159 77.99 1377 reject_low 62 ALIGNMENT 284 Y12-4n10.p1k chr12 630 289 941180 941520 C 342 96.78 1377 reject_low 20 ALIGNMENT 89 Y12-4n10.q1k chr05 999 755 494408 494653 C 245 81.22 1402 reject_low 44 ALIGNMENT 938 Y12-4n10.q1k chr06 31 1138 140986 142100 F 1108 96.30 1402 reject_low 10 ALIGNMENT 306 Y12-4n10.p1k chr09 621 288 246217 246550 C 334 99.40 1377 reject_low 21 ALIGNMENT 0 Y12-4n10.p1k chr01 62 295 160246 160245 F 234 0.00 1377 reject_low 19 ALIGNMENT 911 Y12-4n10.q1k chr04 31 1138 874894 876008 F 1108 95.49 1402 reject_low 12 ALIGNMENT 0 Y12-4n10.q1k chr13 62 754 200094 200093 F 693 0.00 1402 reject_low 48 ALIGNMENT 0 Y12-4n10.p1k chr07 62 764 817078 817077 F 703 0.00 1377 reject_low 52 ALIGNMENT 86 Y12-4n10.q1k chr01 1164 755 161982 162400 C 410 76.59 1402 reject_low 19 ALIGNMENT 0 Y12-4n10.p1k chr03 623 765 143079 151517 F 143 0.00 1377 reject_low 59 ALIGNMENT 298 Y12-4n10.p1k chr15 289 621 709692 710024 F 333 98.80 1377 reject_low 25 ALIGNMENT 39 Y12-4n10.p1k chr01 1085 927 165828 165992 C 159 77.99 1377 reject_low 33 ALIGNMENT 0 Y12-4n10.q1k chr13 754 62 374859 374858 C 693 0.00 1402 reject_low 45 ALIGNMENT 0 Y12-4n10.q1k chr16 754 62 852788 852787 C 693 0.00 1402 reject_low 41 ALIGNMENT 0 Y12-4n10.q1k chr05 754 62 445555 445554 C 693 0.00 1402 reject_low 16 ALIGNMENT 0 Y12-4n10.p1k chr04 62 288 519312 519311 F 227 0.00 1377 reject_low 26 ALIGNMENT 0 Y12-4n10.p1k chr08 62 291 91766 91765 F 230 0.00 1377 reject_low 27 ALIGNMENT 20 Y12-4n10.p1k chr08 862 765 92000 92096 C 98 77.55 1377 reject_low 53 ALIGNMENT 0 Y12-4n10.p1k chr05 623 727 431819 431818 F 105 0.00 1377 reject_low 16 ALIGNMENT 93 Y12-4n10.q1k chr16 755 1087 848174 848510 F 333 78.68 1402 reject_low 40 ALIGNMENT 0 Y12-4n10.p1k chr03 298 62 151839 151838 C 237 0.00 1377 reject_low 60 ALIGNMENT 302 Y12-4n10.p1k chr15 622 289 664813 665146 C 334 99.10 1377 reject_low 23 ALIGNMENT 86 Y12-4n10.q1k chr16 1164 755 806381 806799 C 410 76.59 1402 reject_low 37 ALIGNMENT 103 Y12-4n10.p1k chr03 296 621 124138 124462 F 326 80.67 1377 reject_low 42 ALIGNMENT 94 Y12-4n10.q1k chr04 1087 755 647319 647655 C 333 78.68 1402 reject_low 38 ALIGNMENT 0 Y12-4n10.p1k chr13 62 288 168349 168348 F 227 0.00 1377 reject_low 24 ALIGNMENT 0 Y12-4n10.p1k chr15 622 727 704396 704395 F 106 0.00 1377 reject_low 5 ALIGNMENT 0 Y12-4n10.p1k chr07 298 62 811774 811773 C 237 0.00 1377 reject_low 28 ALIGNMENT 0 Y12-4n10.p1k chr03 765 589 143078 149512 C 177 0.00 1377 reject_low 61 ALIGNMENT 0 Y12-4n10.p1k chr01 926 863 160405 160479 C 64 0.00 1377 reject_low 62 ALIGNMENT 0 Y12-4n10.p1k chr03 281 625 169016 169019 F 345 0.00 1377 reject_low 31 ALIGNMENT 0 Y12-4n10.p1k chr15 764 62 704398 704397 C 703 0.00 1377 reject_low 54 ALIGNMENT 0 Y12-4n10.p1k chr03 763 630 168931 169193 C 134 0.00 1377 reject_low 63 ALIGNMENT 0 Y12-4n10.p1k chr12 727 631 941181 941180 C 97 0.00 1377 reject_low 20 ALIGNMENT 0 Y12-4n10.p1k chr15 62 288 709692 709691 F 227 0.00 1377 reject_low 25 ALIGNMENT 0 Y12-4n10.q1k chr16 62 754 848174 848173 F 693 0.00 1402 reject_low 40 ALIGNMENT 956 Y12-4n10.q1k chr07 31 1210 814530 815723 F 1180 95.25 1402 accept_trans 0 ALIGNMENT 0 Y12-4n10.p1k chr01 62 295 165834 165833 F 234 0.00 1377 reject_low 32 ALIGNMENT 0 Y12-4n10.q1k chr16 754 62 806800 806799 C 693 0.00 1402 reject_low 37 ALIGNMENT 276 Y12-4n10.p1k chr07 621 312 817079 817387 C 310 99.03 1377 accept_trans 0 ALIGNMENT 282 Y12-4n10.p1k chr03 621 289 90437 90768 C 333 97.30 1377 reject_low 4 ALIGNMENT 0 Y12-4n10.p1k chr07 62 308 817418 817417 F 247 0.00 1377 reject_low 55 ALIGNMENT 0 Y12-4n10.p1k chr04 765 62 513587 513586 C 704 0.00 1377 reject_low 34 ALIGNMENT 0 Y12-4n10.p1k chr03 765 62 124463 124462 C 704 0.00 1377 reject_low 15 ALIGNMENT 302 Y12-4n10.p1k chr05 289 622 431486 431819 F 334 99.10 1377 reject_low 16 ALIGNMENT 0 Y12-4n10.p1k chr10 727 623 538017 538016 C 105 0.00 1377 reject_low 30 ALIGNMENT 0 Y12-4n10.p1k chr01 764 62 160577 160576 C 703 0.00 1377 reject_low 62 ALIGNMENT 294 Y12-4n10.p1k chr04 289 622 519312 519644 F 334 98.50 1377 reject_low 26 ALIGNMENT 89 Y12-4n10.q1k chr13 999 755 374613 374858 C 245 81.22 1402 reject_low 45 ALIGNMENT 296 Y12-4n10.p1k chr08 292 621 91766 92095 F 330 98.79 1377 reject_low 27 ALIGNMENT 851 Y12-4n12.q1k chr15 38 1133 533508 534617 F 1096 93.52 1376 accept 0 ALIGNMENT 498 Y12-4n12.p1k chr15 1000 26 537583 538539 C 975 85.95 1387 accept 0 ALIGNMENT 59 Y12-4n13.q1k chr13 905 977 808244 808316 F 73 93.15 1385 reject_low 10 ALIGNMENT 0 Y12-4n13.q1k chr02 904 62 350898 350897 C 843 0.00 1385 reject_low 8 ALIGNMENT 798 Y12-4n13.q1k chr04 1128 28 520815 521890 C 1101 92.82 1385 accept_trans 0 ALIGNMENT 0 Y12-4n13.q1k chr05 897 62 250365 250364 C 836 0.00 1385 reject_low 3 ALIGNMENT 0 Y12-4n13.p1k chr04 62 838 511760 511759 F 777 0.00 1437 reject_low 2 ALIGNMENT 0 Y12-4n13.q1k chr04 62 902 645145 645144 F 841 0.00 1385 reject_low 4 ALIGNMENT 0 Y12-4n13.q1k chr12 62 904 448650 448649 F 843 0.00 1385 reject_low 7 ALIGNMENT 0 Y12-4n13.q1k chr05 62 905 131082 131081 F 844 0.00 1385 reject_low 9 ALIGNMENT 60 Y12-4n13.q1k chr05 906 972 131082 131148 F 67 95.52 1385 reject_low 9 ALIGNMENT 64 Y12-4n13.q1k chr02 979 905 350823 350897 C 75 94.67 1385 reject_low 8 ALIGNMENT 20 Y12-4n13.p1k chr04 839 883 511760 511804 F 45 82.22 1437 reject_low 2 ALIGNMENT 73 Y12-4n13.q1k chr04 895 977 802714 802797 F 83 96.39 1385 reject_low 1 ALIGNMENT 74 Y12-4n13.q1k chr04 903 981 645145 645223 F 79 97.47 1385 reject_low 4 ALIGNMENT 73 Y12-4n13.q1k chr08 977 903 134314 134388 C 75 98.67 1385 reject_low 6 ALIGNMENT 73 Y12-4n13.q1k chr03 903 977 168293 168367 F 75 98.67 1385 reject_low 5 ALIGNMENT 0 Y12-4n13.q1k chr08 902 62 134389 134388 C 841 0.00 1385 reject_low 6 ALIGNMENT 71 Y12-4n13.q1k chr12 905 977 448650 448722 F 73 98.63 1385 reject_low 7 ALIGNMENT 0 Y12-4n13.q1k chr13 62 904 808244 808243 F 843 0.00 1385 reject_low 10 ALIGNMENT 972 Y12-4n13.p1k chr04 18 1226 510902 512096 F 1209 95.12 1437 accept_trans 0 ALIGNMENT 0 Y12-4n13.q1k chr04 62 894 802714 802713 F 833 0.00 1385 reject_low 1 ALIGNMENT 75 Y12-4n13.q1k chr05 977 898 250285 250364 C 80 97.50 1385 reject_low 3 ALIGNMENT 0 Y12-4n13.q1k chr03 62 902 168293 168292 F 841 0.00 1385 reject_low 5 ALIGNMENT 20 Y12-4n15.p1k chr07 716 688 448896 448924 C 29 96.55 1414 reject_low 5 ALIGNMENT 0 Y12-4n15.p1k chr07 802 717 448897 448896 C 86 0.00 1414 reject_low 5 ALIGNMENT 0 Y12-4n15.p1k chr05 680 62 377480 377479 C 619 0.00 1414 reject_low 3 ALIGNMENT 0 Y12-4n15.p1k chr05 802 715 377447 377446 C 88 0.00 1414 reject_low 3 ALIGNMENT 0 Y12-4n15.p1k chr07 687 62 448925 448924 C 626 0.00 1414 reject_low 5 ALIGNMENT 21 Y12-4n15.p1k chr05 714 681 377446 377479 C 34 94.12 1414 reject_low 3 ALIGNMENT 919 Y12-4n15.p1k chr11 1276 15 522727 523985 C 1262 92.47 1414 accept 0 ALIGNMENT 0 Y12-4n15.p1k chr01 683 62 113320 113319 C 622 0.00 1414 reject_low 4 ALIGNMENT 20 Y12-4n15.p1k chr09 725 691 369835 369869 C 35 94.29 1414 reject_low 1 ALIGNMENT 0 Y12-4n15.p1k chr14 711 802 70056 70055 F 92 0.00 1414 reject_low 2 ALIGNMENT 957 Y12-4n15.q1k chr11 26 1181 518678 519834 F 1156 94.90 1443 accept 0 ALIGNMENT 0 Y12-4n15.p1k chr09 802 726 369836 369835 C 77 0.00 1414 reject_low 1 ALIGNMENT 20 Y12-4n15.p1k chr01 716 684 113287 113319 C 33 93.94 1414 reject_low 4 ALIGNMENT 23 Y12-4n15.p1k chr14 682 710 70028 70056 F 29 100.00 1414 reject_low 2 ALIGNMENT 0 Y12-4n15.p1k chr14 62 681 70028 70027 F 620 0.00 1414 reject_low 2 ALIGNMENT 0 Y12-4n15.p1k chr01 802 717 113288 113287 C 86 0.00 1414 reject_low 4 ALIGNMENT 0 Y12-4n15.p1k chr09 690 62 369870 369869 C 629 0.00 1414 reject_low 1 ALIGNMENT 1040 Y12-4n17.p1k chr15 21 1223 482762 483970 F 1203 96.43 1379 accept 0 ALIGNMENT 1002 Y12-4n17.q1k chr15 1147 27 488073 489201 C 1121 96.79 1363 accept 0 ALIGNMENT 700 Y12-4n18.p1k chr12 28 1060 460069 461117 F 1033 91.29 1438 accept 0 ALIGNMENT 0 Y12-4n18.p1k chr12 62 859 489754 489753 F 798 0.00 1438 reject_low 2 ALIGNMENT 109 Y12-4n18.p1k chr12 860 1060 489754 489948 F 201 87.56 1438 reject_low 2 ALIGNMENT 0 Y12-4n18.p1k chr12 62 486 451419 451418 F 425 0.00 1438 reject_low 1 ALIGNMENT 1023 Y12-4n18.q1k chr12 1180 27 464317 465485 C 1154 96.79 1368 accept 0 ALIGNMENT 375 Y12-4n18.p1k chr12 487 1060 451419 451980 F 574 90.59 1438 reject_low 1 ALIGNMENT 1023 Y12-4n18.q1k chr12 1180 27 455180 456348 C 1154 96.79 1368 reject_low 1 ALIGNMENT 1006 Y12-4n19.q1k chr02 1220 35 549739 550937 C 1186 96.29 1360 accept 0 ALIGNMENT 1011 Y12-4n19.p1k chr02 18 1191 545804 546993 F 1174 96.76 1360 accept 0 ALIGNMENT 1046 Y12-4n20.q1k chr07 1294 34 63024 64291 C 1261 96.19 1429 accept 0 ALIGNMENT 966 Y12-4n20.p1k chr07 22 1142 60683 61818 F 1121 96.97 1347 accept 0 ALIGNMENT 936 Y12-4n21.q1k chr07 32 1217 659854 661033 F 1186 94.86 1361 accept 0 ALIGNMENT 994 Y12-4n21.p1k chr07 1288 16 663006 664279 C 1273 94.50 1346 accept 0 ALIGNMENT 0 Y12-4n22.p1k chr10 62 791 7449 7448 F 730 0.00 1333 reject_low 4 ALIGNMENT 175 Y12-4n22.p1k chr06 789 1103 5208 5523 F 315 87.94 1333 reject_low 15 ALIGNMENT 0 Y12-4n22.p1k chrm 790 864 26434 26433 F 75 0.00 1333 accept 0 ALIGNMENT 0 Y12-4n22.p1k chr02 794 62 812691 812690 C 733 0.00 1333 reject_low 11 ALIGNMENT 193 Y12-4n22.p1k chr10 1103 788 744824 745139 C 316 89.87 1333 reject_low 8 ALIGNMENT 201 Y12-4n22.p1k chr10 792 1183 7449 7847 F 392 86.22 1333 reject_low 4 ALIGNMENT 0 Y12-4n22.p1k chr04 791 62 1524928 1524927 C 730 0.00 1333 reject_low 3 ALIGNMENT 0 Y12-4n22.p1k chr03 787 62 316103 316102 C 726 0.00 1333 reject_low 2 ALIGNMENT 0 Y12-4n22.p1k chr04 62 794 587 586 F 733 0.00 1333 reject_low 9 ALIGNMENT 0 Y12-4n22.p1k chr14 62 791 7108 7107 F 730 0.00 1333 reject_low 6 ALIGNMENT 171 Y12-4n22.p1k chr14 1075 792 783314 783598 C 284 89.08 1333 reject_low 18 ALIGNMENT 195 Y12-4n22.p1k chr04 795 1103 587 897 F 309 90.29 1333 reject_low 9 ALIGNMENT 0 Y12-4n22.p1k chr08 62 792 5185 5184 F 731 0.00 1333 reject_low 7 ALIGNMENT 170 Y12-4n22.p1k chr07 1103 788 1083648 1083963 C 316 87.34 1333 reject_low 17 ALIGNMENT 205 Y12-4n22.p1k chr08 793 1077 5185 5470 F 285 92.98 1333 reject_low 7 ALIGNMENT 0 Y12-4n22.p1k chr09 62 791 7466 7465 F 730 0.00 1333 reject_low 10 ALIGNMENT 652 Y12-4n22.p1k chrm 19 789 25659 26434 F 771 98.96 1333 accept 0 ALIGNMENT 194 Y12-4n22.p1k chr09 792 1103 7466 7777 F 312 90.06 1333 reject_low 10 ALIGNMENT 178 Y12-4n22.p1k chr11 1103 788 665549 665865 C 316 87.97 1333 reject_low 14 ALIGNMENT 0 Y12-4n22.p1k chr12 791 62 1064599 1064598 C 730 0.00 1333 reject_low 1 ALIGNMENT 0 Y12-4n22.p1k chr16 62 787 6899 6898 F 726 0.00 1333 reject_low 5 ALIGNMENT 187 Y12-4n22.p1k chr05 1103 788 569601 569917 C 316 89.24 1333 reject_low 13 ALIGNMENT 956 Y12-4n22.q1k chr03 33 1338 304839 306143 F 1306 92.42 1391 reject_low 2 ALIGNMENT 0 Y12-4n22.p1k chr14 791 62 783599 783598 C 730 0.00 1333 reject_low 18 ALIGNMENT 218 Y12-4n22.p1k chr04 1183 792 1524528 1524927 C 392 87.76 1333 reject_low 3 ALIGNMENT 193 Y12-4n22.p1k chr03 1155 788 315731 316102 C 368 86.41 1333 reject_low 2 ALIGNMENT 0 Y12-4n22.p1k chr07 787 62 1083964 1083963 C 726 0.00 1333 reject_low 17 ALIGNMENT 207 Y12-4n22.p1k chr14 792 1103 7108 7421 F 312 91.35 1333 reject_low 6 ALIGNMENT 0 Y12-4n22.p1k chr06 62 788 5208 5207 F 727 0.00 1333 reject_low 15 ALIGNMENT 0 Y12-4n22.p1k chr13 787 62 923862 923861 C 726 0.00 1333 reject_low 19 ALIGNMENT 161 Y12-4n22.p1k chr13 1076 788 923573 923861 C 289 87.89 1333 reject_low 19 ALIGNMENT 0 Y12-4n22.p1k chr08 787 62 556432 556431 C 726 0.00 1333 reject_low 20 ALIGNMENT 0 Y12-4n22.p1k chr13 62 794 6027 6026 F 733 0.00 1333 reject_low 12 ALIGNMENT 156 Y12-4n22.p1k chr08 1075 788 556141 556431 C 288 87.15 1333 reject_low 20 ALIGNMENT 192 Y12-4n22.p1k chr13 795 1103 6027 6337 F 309 89.97 1333 reject_low 12 ALIGNMENT 182 Y12-4n22.p1k chr12 1162 792 1064222 1064598 C 371 85.44 1333 reject_low 1 ALIGNMENT 192 Y12-4n22.p1k chr02 1103 795 812380 812690 C 309 89.97 1333 reject_low 11 ALIGNMENT 0 Y12-4n22.p1k chr05 787 62 569918 569917 C 726 0.00 1333 reject_low 13 ALIGNMENT 0 Y12-4n22.p1k chr10 787 62 745140 745139 C 726 0.00 1333 reject_low 8 ALIGNMENT 182 Y12-4n22.p1k chr16 788 1174 6899 7293 F 387 84.75 1333 reject_low 5 ALIGNMENT 1010 Y12-4n22.q1k chr12 33 1338 1060236 1061540 F 1306 93.80 1391 reject_low 1 ALIGNMENT 0 Y12-4n22.p1k chr02 62 792 6289 6288 F 731 0.00 1333 reject_low 16 ALIGNMENT 0 Y12-4n22.p1k chr11 787 62 665866 665865 C 726 0.00 1333 reject_low 14 ALIGNMENT 182 Y12-4n22.p1k chr02 793 1075 6289 6572 F 283 90.46 1333 reject_low 16 ALIGNMENT 1070 Y12-4n23.q1k chr14 36 1213 242426 243612 F 1178 97.54 1309 accept 0 ALIGNMENT 1008 Y12-4n23.p1k chr14 1235 22 245349 246571 C 1214 95.55 1310 accept 0 ALIGNMENT 992 Y12-4n24.p1k chr15 26 1209 264410 265611 F 1184 96.20 1285 accept 0 ALIGNMENT 973 Y12-4n24.q1k chr15 1162 35 267337 268481 C 1128 96.54 1328 accept 0 ALIGNMENT 0 Y12-4o01.p1k chr04 290 803 513533 513532 F 514 0.00 1382 reject_low 20 ALIGNMENT 73 Y12-4o01.p1k chr03 289 32 169255 169517 C 258 79.07 1382 reject_low 8 ALIGNMENT 97 Y12-4o01.p1k chr03 319 21 149502 149796 C 299 80.94 1382 reject_low 2 ALIGNMENT 76 Y12-4o01.p1k chr10 289 32 483602 483864 C 258 79.46 1382 reject_low 7 ALIGNMENT 35 Y12-4o01.p1k chr13 545 161 481364 481750 C 385 72.47 1382 reject_low 1 ALIGNMENT 0 Y12-4o01.p1k chr13 290 803 357282 357281 F 514 0.00 1382 reject_low 12 ALIGNMENT 67 Y12-4o01.p1k chr03 32 289 124153 124409 F 258 79.46 1382 reject_low 14 ALIGNMENT 58 Y12-4o01.p1k chr04 32 289 513277 513533 F 258 77.91 1382 reject_low 20 ALIGNMENT 0 Y12-4o01.p1k chr03 290 803 124409 124408 F 514 0.00 1382 reject_low 14 ALIGNMENT 70 Y12-4o01.p1k chr11 32 289 517117 517373 F 258 79.84 1382 reject_low 11 ALIGNMENT 0 Y12-4o01.p1k chr07 803 138 774040 774039 C 666 0.00 1382 reject_low 23 ALIGNMENT 0 Y12-4o01.p1k chr12 803 305 650863 650862 C 499 0.00 1382 reject_low 6 ALIGNMENT 0 Y12-4o01.p1k chr01 803 322 189440 189439 C 482 0.00 1382 reject_low 21 ALIGNMENT 0 Y12-4o01.p1k chr07 803 290 535269 535268 C 514 0.00 1382 reject_low 10 ALIGNMENT 25 Y12-4o01.p1k chr10 321 218 538036 538141 C 104 77.88 1382 reject_low 27 ALIGNMENT 0 Y12-4o01.p1k chr01 322 803 166144 166143 F 482 0.00 1382 reject_low 5 ALIGNMENT 64 Y12-4o01.p1k chr08 32 289 116438 116694 F 258 79.07 1382 reject_low 17 ALIGNMENT 0 Y12-4o01.p1k chr04 290 803 434698 434697 F 514 0.00 1382 reject_low 3 ALIGNMENT 0 Y12-4o01.p1k chr03 803 290 151571 151570 C 514 0.00 1382 reject_low 19 ALIGNMENT 0 Y12-4o01.p1k chr10 803 290 483603 483602 C 514 0.00 1382 reject_low 7 ALIGNMENT 0 Y12-4o01.p1k chr10 399 307 537947 543394 C 93 0.00 1382 reject_low 26 ALIGNMENT 0 Y12-4o01.p1k chr14 119 803 632109 632108 F 685 0.00 1382 reject_low 18 ALIGNMENT 24 Y12-4o01.p1k chr10 515 400 537831 537946 C 116 76.72 1382 reject_low 26,27 ALIGNMENT 58 Y12-4o01.p1k chr03 289 32 151570 151826 C 258 77.91 1382 reject_low 19 ALIGNMENT 54 Y12-4o01.p1k chr01 289 32 183189 183446 C 258 77.52 1382 reject_low 22 ALIGNMENT 0 Y12-4o01.p1k chr08 290 803 116694 116693 F 514 0.00 1382 reject_low 17 ALIGNMENT 1014 Y12-4o01.q1k chr13 1247 34 485193 486406 C 1214 95.63 1293 accept 0 ALIGNMENT 60 Y12-4o01.p1k chr14 32 118 632022 632109 F 87 90.80 1382 reject_low 18 ALIGNMENT 0 Y12-4o01.p1k chr04 803 290 802954 802953 C 514 0.00 1382 reject_low 16 ALIGNMENT 709 Y12-4o01.p1k chr13 24 960 481227 482188 F 937 94.02 1382 accept 0 ALIGNMENT 0 Y12-4o01.p1k chr10 803 516 537832 537831 C 288 0.00 1382 reject_low 26,27 ALIGNMENT 65 Y12-4o01.p1k chr04 289 32 802953 803208 C 258 79.07 1382 reject_low 16 ALIGNMENT 70 Y12-4o01.p1k chr13 32 289 357026 357282 F 258 79.84 1382 reject_low 12 ALIGNMENT 0 Y12-4o01.p1k chr13 160 62 481751 481750 C 99 0.00 1382 reject_low 1 ALIGNMENT 84 Y12-4o01.p1k chr01 32 321 160261 160556 F 290 79.66 1382 reject_low 4 ALIGNMENT 0 Y12-4o01.p1k chr03 803 290 169256 169255 C 514 0.00 1382 reject_low 8 ALIGNMENT 72 Y12-4o01.p1k chr12 304 32 650862 651137 C 273 78.02 1382 reject_low 6 ALIGNMENT 0 Y12-4o01.p1k chr10 314 360 537955 538012 F 47 0.00 1382 reject_low 25 ALIGNMENT 48 Y12-4o01.p1k chr01 321 32 189439 189729 C 290 75.17 1382 reject_low 21 ALIGNMENT 67 Y12-4o01.p1k chr15 32 289 980277 980533 F 258 79.46 1382 reject_low 15 ALIGNMENT 69 Y12-4o01.p1k chr10 71 313 537714 537954 F 243 79.84 1382 reject_low 25 ALIGNMENT 0 Y12-4o01.p1k chr10 436 803 538087 538086 F 368 0.00 1382 reject_low 25 ALIGNMENT 0 Y12-4o01.p1k chr03 290 803 168875 168874 F 514 0.00 1382 reject_low 9 ALIGNMENT 0 Y12-4o01.p1k chr01 803 290 183190 183189 C 514 0.00 1382 reject_low 22 ALIGNMENT 29 Y12-4o01.p1k chr10 361 435 538013 538087 F 75 82.67 1382 reject_low 25 ALIGNMENT 0 Y12-4o01.p1k chr01 322 803 160556 160555 F 482 0.00 1382 reject_low 4 ALIGNMENT 37 Y12-4o01.p1k chr16 32 181 436269 436420 F 150 78.00 1382 reject_low 24 ALIGNMENT 59 Y12-4o01.p1k chr10 306 32 543395 543671 C 275 76.73 1382 reject_low 26 ALIGNMENT 0 Y12-4o01.p1k chr10 217 62 538142 538141 C 156 0.00 1382 reject_low 27 ALIGNMENT 70 Y12-4o01.p1k chr14 32 289 96632 96888 F 258 79.84 1382 reject_low 13 ALIGNMENT 70 Y12-4o01.p1k chr07 289 32 535268 535524 C 258 79.46 1382 reject_low 10 ALIGNMENT 0 Y12-4o01.p1k chr14 290 803 96888 96887 F 514 0.00 1382 reject_low 13 ALIGNMENT 71 Y12-4o01.p1k chr03 32 289 168617 168875 F 258 78.29 1382 reject_low 9 ALIGNMENT 139 Y12-4o01.p1k chr04 32 289 434442 434698 F 258 86.82 1382 reject_low 3 ALIGNMENT 0 Y12-4o01.p1k chr15 290 803 980533 980532 F 514 0.00 1382 reject_low 15 ALIGNMENT 84 Y12-4o01.p1k chr01 32 321 165849 166144 F 290 79.66 1382 reject_low 5 ALIGNMENT 51 Y12-4o01.p1k chr07 137 32 774039 774145 C 106 83.96 1382 reject_low 23 ALIGNMENT 0 Y12-4o01.p1k chr16 182 803 436420 436419 F 622 0.00 1382 reject_low 24 ALIGNMENT 0 Y12-4o01.p1k chr13 803 546 481365 481364 C 258 0.00 1382 reject_low 1 ALIGNMENT 0 Y12-4o01.p1k chr11 290 803 517373 517372 F 514 0.00 1382 reject_low 11 ALIGNMENT 0 Y12-4o01.p1k chr03 803 320 149503 149502 C 484 0.00 1382 reject_low 2 ALIGNMENT 0 Y12-4o01.p1k chr10 399 322 537947 538035 C 78 0.00 1382 reject_low 27 ALIGNMENT 1052 Y12-4o02.q1k chr12 1280 27 463196 464453 C 1254 95.45 1315 accept 0 ALIGNMENT 150 Y12-4o02.p1k chr12 16 176 468768 468930 F 161 98.14 1452 reject_low 2 ALIGNMENT 0 Y12-4o02.p1k chr12 177 430 468930 468929 F 254 0.00 1452 reject_low 2 ALIGNMENT 467 Y12-4o02.p1k chr12 16 752 459631 460394 F 737 89.82 1452 accept 0 ALIGNMENT 0 Y12-4o02.p1k chr12 192 430 489481 489480 F 239 0.00 1452 reject_low 3 ALIGNMENT 0 Y12-4o02.p1k chr12 177 430 482162 482161 F 254 0.00 1452 reject_low 5 ALIGNMENT 116 Y12-4o02.p1k chr12 58 176 482044 482162 F 119 99.16 1452 reject_low 5 ALIGNMENT 116 Y12-4o02.p1k chr12 58 176 485696 485814 F 119 99.16 1452 reject_low 6 ALIGNMENT 0 Y12-4o02.p1k chr12 177 430 472582 472581 F 254 0.00 1452 reject_low 4 ALIGNMENT 116 Y12-4o02.p1k chr12 58 176 472464 472582 F 119 99.16 1452 reject_low 4 ALIGNMENT 0 Y12-4o02.p1k chr12 177 430 485814 485813 F 254 0.00 1452 reject_low 6 ALIGNMENT 125 Y12-4o02.p1k chr12 58 191 489348 489481 F 134 97.76 1452 reject_low 3 ALIGNMENT 1046 Y12-4o02.q1k chr12 1259 27 454080 455316 C 1233 95.78 1315 reject_low 1 ALIGNMENT 1008 Y12-4o03.p1k chr10 20 1191 676747 677919 F 1172 96.76 1367 accept 0 ALIGNMENT 970 Y12-4o03.q1k chr10 1128 40 680658 681757 C 1089 96.97 1306 accept 0 ALIGNMENT 1012 Y12-4o04.q1k chr07 33 1135 556300 557411 F 1103 98.46 1329 accept 0 ALIGNMENT 296 Y12-4o04.q1k chr12 41 409 819775 820143 F 369 93.77 1329 reject_low 1 ALIGNMENT 1007 Y12-4o04.p1k chr07 1220 31 560352 561546 C 1190 96.22 1355 accept 0 ALIGNMENT 0 Y12-4o04.q1k chr12 410 907 820143 820142 F 498 0.00 1329 reject_low 1 ALIGNMENT 978 Y12-4o05.q1k chr10 1211 37 270518 271695 C 1175 96.51 1361 accept 0 ALIGNMENT 1010 Y12-4o05.p1k chr10 18 1282 267579 268844 F 1265 95.02 1433 accept 0 ALIGNMENT 1032 Y12-4o06.q1k chr12 1268 30 235019 236255 C 1239 95.80 1403 accept 0 ALIGNMENT 1004 Y12-4o06.p1k chr12 19 1261 230251 231492 F 1243 95.17 1415 accept 0 ALIGNMENT 24 Y12-4o07.q1k chr12 256 315 701200 701259 F 60 96.67 1330 reject_low 5 ALIGNMENT 0 Y12-4o07.q1k chr12 316 886 701259 701258 F 571 0.00 1330 reject_low 5 ALIGNMENT 391 Y12-4o07.q1k chr13 33 508 668032 668492 F 476 96.01 1330 reject_low 1 ALIGNMENT 0 Y12-4o07.q1k chr13 316 886 87010 87009 F 571 0.00 1330 reject_low 2 ALIGNMENT 0 Y12-4o07.q1k chr09 249 62 105834 105833 C 188 0.00 1330 reject_low 3 ALIGNMENT 1051 Y12-4o07.p1k chr13 1234 20 671934 673167 C 1215 96.21 1369 accept 0 ALIGNMENT 0 Y12-4o07.q1k chr12 62 255 701200 701199 F 194 0.00 1330 reject_low 5 ALIGNMENT 0 Y12-4o07.q1k chr04 62 255 778756 778755 F 194 0.00 1330 reject_low 4 ALIGNMENT 0 Y12-4o07.q1k chr10 886 314 470038 470037 C 573 0.00 1330 reject_low 6 ALIGNMENT 29 Y12-4o07.q1k chr09 316 250 105767 105833 C 67 95.52 1330 reject_low 3 ALIGNMENT 25 Y12-4o07.q1k chr04 256 329 778756 778827 F 74 94.59 1330 reject_low 4 ALIGNMENT 30 Y12-4o07.q1k chr13 250 315 86945 87010 F 66 96.97 1330 reject_low 2 ALIGNMENT 23 Y12-4o07.q1k chr10 313 256 470037 470094 C 58 96.55 1330 reject_low 6 ALIGNMENT 0 Y12-4o07.q1k chr13 509 886 668492 668491 F 378 0.00 1330 reject_low 1 ALIGNMENT 0 Y12-4o07.q1k chr09 886 317 105768 105767 C 570 0.00 1330 reject_low 3 ALIGNMENT 0 Y12-4o07.q1k chr13 62 249 86945 86944 F 188 0.00 1330 reject_low 2 ALIGNMENT 0 Y12-4o07.q1k chr10 255 62 470095 470094 C 194 0.00 1330 reject_low 6 ALIGNMENT 928 Y12-4o07.q1k chr13 59 1178 668058 669167 F 1120 95.62 1330 accept 0 ALIGNMENT 0 Y12-4o07.q1k chr04 330 886 778827 778826 F 557 0.00 1330 reject_low 4 ALIGNMENT 953 Y12-4o08.q1k chr15 1186 33 886780 887938 C 1154 96.27 1360 accept 0 ALIGNMENT 1015 Y12-4o08.p1k chr15 22 1263 882546 883788 F 1242 94.93 1405 accept 0 ALIGNMENT 881 Y12-4o09.p1k chr04 995 22 1424143 1425126 C 974 98.36 1267 accept_chi 1 ALIGNMENT 972 Y12-4o09.q1k chr04 38 1149 1224581 1225706 F 1112 96.85 1340 accept_chi 0 ALIGNMENT 921 Y12-4o11.p1k chr12 33 1164 603230 604376 F 1132 95.05 1347 accept 0 ALIGNMENT 1025 Y12-4o11.q1k chr12 1247 34 606287 607510 C 1214 95.72 1349 accept 0 ALIGNMENT 1047 Y12-4o12.p1k chr13 20 1218 80488 81699 F 1199 97.08 1394 accept 0 ALIGNMENT 989 Y12-4o12.q1k chr13 1232 37 83542 84740 C 1196 96.32 1380 accept 0 ALIGNMENT 76 Y12-4o13.p1k chr07 404 483 794422 794501 F 80 98.75 1392 reject_low 1 ALIGNMENT 0 Y12-4o13.p1k chr05 402 62 312093 312092 C 341 0.00 1392 reject_low 3 ALIGNMENT 942 Y12-4o13.q1k chr01 1127 30 168943 170054 C 1098 96.27 1308 accept_trans 0 ALIGNMENT 0 Y12-4o13.p1k chr07 62 403 794422 794421 F 342 0.00 1392 reject_low 1 ALIGNMENT 0 Y12-4o13.p1k chr05 729 478 312019 312018 C 252 0.00 1392 reject_low 3 ALIGNMENT 0 Y12-4o13.p1k chr07 484 729 794501 794500 F 246 0.00 1392 reject_low 1 ALIGNMENT 0 Y12-4o13.p1k chr12 403 62 214957 214956 C 342 0.00 1392 reject_low 4 ALIGNMENT 0 Y12-4o13.p1k chr15 729 483 854179 854178 C 247 0.00 1392 reject_low 2 ALIGNMENT 0 Y12-4o13.p1k chr01 304 303 160238 166167 F 0 0.00 1392 accept_trans 0 ALIGNMENT 72 Y12-4o13.p1k chr12 476 404 214884 214956 C 73 100.00 1392 reject_low 4 ALIGNMENT 653 Y12-4o13.p1k chr01 302 1137 166166 166993 F 836 94.14 1392|2,0 accept_trans 0 ALIGNMENT 0 Y12-4o13.p1k chr15 403 62 854257 854256 C 342 0.00 1392 reject_low 2 ALIGNMENT 0 Y12-4o13.p1k chr12 729 477 214885 214884 C 253 0.00 1392 reject_low 4 ALIGNMENT 74 Y12-4o13.p1k chr05 477 403 312018 312092 C 75 100.00 1392 reject_low 3 ALIGNMENT 256 Y12-4o13.p1k chr01 18 305 159951 160239 F 288 98.26 1392|0,2 accept_trans 0 ALIGNMENT 75 Y12-4o13.p1k chr15 482 404 854178 854256 C 79 98.73 1392 reject_low 2 ALIGNMENT 929 Y12-4o14.p1k chr11 22 1159 179462 180612 F 1138 95.17 1374 accept 0 ALIGNMENT 984 Y12-4o14.q1k chr11 1237 29 182404 183604 C 1209 95.70 1420 accept 0 ALIGNMENT 0 Y12-4o15.p1k chr04 820 451 541 540 C 370 0.00 1350 reject_low 10 ALIGNMENT 0 Y12-4o15.p1k chr02 688 690 793864 793887 F 3 0.00 1350 accept_tel 0 ALIGNMENT 0 Y12-4o15.p1k chr09 820 451 7419 7418 C 370 0.00 1350 reject_low 14 ALIGNMENT 23 Y12-4o15.p1k chr02 413 450 812701 812737 F 38 89.47 1350 reject_low 11 ALIGNMENT 20 Y12-4o15.p1k chr04 413 450 1524940 1524976 F 38 86.84 1350 reject_low 17 ALIGNMENT 23 Y12-4o15.p1k chr07 423 450 1083976 1084002 F 28 96.43 1350 reject_low 16 ALIGNMENT 0 Y12-4o15.p1k chr07 413 422 1083946 1083975 F 10 0.00 1350 reject_low 16 ALIGNMENT 0 Y12-4o15.p1k chr01 820 451 433 432 C 370 0.00 1350 reject_low 19 ALIGNMENT 0 Y12-4o15.p1k chr13 412 412 6017 6039 C 1 0.00 1350 reject_low 12 ALIGNMENT 0 Y12-4o15.p1k chr02 747 820 793943 793942 F 74 0.00 1350 accept_tel 0 ALIGNMENT 252 Y12-4o15.p1k chr04 411 19 600 991 C 393 90.84 1350 reject_low 10 ALIGNMENT 0 Y12-4o15.p1k chr15 413 422 1084225 1084254 F 10 0.00 1350 reject_low 20 ALIGNMENT 0 Y12-4o15.p1k chr13 820 451 5981 5980 C 370 0.00 1350 reject_low 12 ALIGNMENT 0 Y12-4o15.p1k chr03 820 451 737 736 C 370 0.00 1350 reject_low 18 ALIGNMENT 0 Y12-4o15.p1k chr12 820 398 11796 11795 C 423 0.00 1350 reject_low 6 ALIGNMENT 182 Y12-4o15.p1k chr13 103 412 923535 923843 F 310 89.03 1350 reject_low 8 ALIGNMENT 234 Y12-4o15.p1k chr12 55 412 1064226 1064584 F 358 90.78 1350 reject_low 4 ALIGNMENT 0 Y12-4o15.p1k chr04 451 820 1524976 1524975 F 370 0.00 1350 reject_low 17 ALIGNMENT 256 Y12-4o15.p1k chr08 411 19 5199 5592 C 393 91.09 1350 reject_low 13 ALIGNMENT 0 Y12-4o15.p1k chr11 413 820 665847 665846 F 408 0.00 1350 reject_low 7 ALIGNMENT 236 Y12-4o15.p1k chr07 19 412 1083553 1083945 F 394 89.34 1350 reject_low 16 ALIGNMENT 24 Y12-4o15.p1k chr09 450 413 7418 7453 C 38 92.11 1350 reject_low 14 ALIGNMENT 260 Y12-4o15.p1k chr10 412 55 7463 7819 C 358 93.30 1350 reject_low 15 ALIGNMENT 0 Y12-4o15.p1k chr09 412 413 7454 7479 C 0 0.00 1350 reject_low 14 ALIGNMENT 0 Y12-4o15.p1k chr07 820 407 483 482 C 414 0.00 1350 reject_low 5 ALIGNMENT 23 Y12-4o15.p1k chr01 450 413 432 468 C 38 89.47 1350 reject_low 19 ALIGNMENT 0 Y12-4o15.p1k chr01 412 413 469 494 C 0 0.00 1350 reject_low 19 ALIGNMENT 0 Y12-4o15.p1k chr13 62 102 923535 923534 F 41 0.00 1350 reject_low 8 ALIGNMENT 251 Y12-4o15.p1k chr10 19 397 744730 745107 F 379 91.56 1350 reject_low 1 ALIGNMENT 0 Y12-4o15.p1k chr16 820 451 6861 6860 C 370 0.00 1350 reject_low 21 ALIGNMENT 260 Y12-4o15.p1k chr09 412 55 7480 7836 C 358 93.30 1350 reject_low 14 ALIGNMENT 0 Y12-4o15.p1k chr14 412 413 7096 7121 C 0 0.00 1350 reject_low 9 ALIGNMENT 23 Y12-4o15.p1k chr13 450 413 5980 6016 C 38 89.47 1350 reject_low 12 ALIGNMENT 0 Y12-4o15.p1k chr04 412 412 577 599 C 1 0.00 1350 reject_low 10 ALIGNMENT 0 Y12-4o15.p1k chr02 451 820 812737 812736 F 370 0.00 1350 reject_low 11 ALIGNMENT 0 Y12-4o15.p1k chr10 398 820 745107 745106 F 423 0.00 1350 reject_low 1 ALIGNMENT 0 Y12-4o15.p1k chr09 413 820 439370 439369 F 408 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-4o15.p1k chr02 62 451 793568 793567 F 390 0.00 1350 accept_tel 0 ALIGNMENT 24 Y12-4o15.p1k chr10 450 413 7401 7436 C 38 92.11 1350 reject_low 15 ALIGNMENT 66 Y12-4o15.p1k chr02 452 606 793568 793721 F 155 81.94 1350 accept_tel 0 ALIGNMENT 224 Y12-4o15.p1k chr03 397 55 808 1149 C 343 90.96 1350 reject_low 18 ALIGNMENT 0 Y12-4o15.p1k chr16 422 413 6887 6916 C 10 0.00 1350 reject_low 21 ALIGNMENT 0 Y12-4o15.p1k chr12 413 820 1064584 1064583 F 408 0.00 1350 reject_low 4 ALIGNMENT 0 Y12-4o15.p1k chr13 413 820 923843 923842 F 408 0.00 1350 reject_low 8 ALIGNMENT 20 Y12-4o15.p1k chr15 423 450 1084255 1084281 F 28 92.86 1350 reject_low 20 ALIGNMENT 0 Y12-4o15.p1k chr03 413 820 316084 316083 F 408 0.00 1350 reject_low 3 ALIGNMENT 43 Y12-4o15.p1k chr02 691 746 793888 793943 F 56 92.86 1350 accept_tel 0 ALIGNMENT 0 Y12-4o15.p1k chr14 820 451 7061 7060 C 370 0.00 1350 reject_low 9 ALIGNMENT 23 Y12-4o15.p1k chr04 450 413 540 576 C 38 89.47 1350 reject_low 10 ALIGNMENT 201 Y12-4o15.p1k chr11 112 412 665547 665847 F 301 91.36 1350 reject_low 7 ALIGNMENT 23 Y12-4o15.p1k chr03 450 413 736 772 C 38 89.47 1350 reject_low 18 ALIGNMENT 24 Y12-4o15.p1k chr14 450 413 7060 7095 C 38 92.11 1350 reject_low 9 ALIGNMENT 259 Y12-4o15.p1k chr14 412 19 7122 7515 C 394 91.37 1350 reject_low 9 ALIGNMENT 0 Y12-4o15.p1k chr08 820 451 5136 5135 C 370 0.00 1350 reject_low 13 ALIGNMENT 243 Y12-4o15.p1k chr15 55 412 1083866 1084224 F 358 91.62 1350 reject_low 20 ALIGNMENT 249 Y12-4o15.p1k chr02 19 411 812286 812677 F 393 90.59 1350 reject_low 11 ALIGNMENT 0 Y12-4o15.p1k chr11 62 111 665547 665546 F 50 0.00 1350 reject_low 7 ALIGNMENT 0 Y12-4o15.p1k chr02 412 412 812678 812700 F 1 0.00 1350 reject_low 11 ALIGNMENT 20 Y12-4o15.p1k chr08 450 413 5135 5171 C 38 89.47 1350 reject_low 13 ALIGNMENT 20 Y12-4o15.p1k chr16 450 423 6860 6886 C 28 92.86 1350 reject_low 21 ALIGNMENT 246 Y12-4o15.p1k chr09 19 412 438976 439370 F 394 90.10 1350 reject_low 2 ALIGNMENT 241 Y12-4o15.p1k chr04 55 412 1524556 1524913 F 358 91.62 1350 reject_low 17 ALIGNMENT 0 Y12-4o15.p1k chr03 412 398 773 807 C 15 0.00 1350 reject_low 18 ALIGNMENT 0 Y12-4o15.p1k chr07 451 820 1084002 1084001 F 370 0.00 1350 reject_low 16 ALIGNMENT 219 Y12-4o15.p1k chr01 412 55 495 853 C 358 89.39 1350 reject_low 19 ALIGNMENT 40 Y12-4o15.p1k chr02 633 687 793809 793863 F 55 90.91 1350 accept_tel 0 ALIGNMENT 0 Y12-4o15.p1k chr10 820 451 7402 7401 C 370 0.00 1350 reject_low 15 ALIGNMENT 0 Y12-4o15.p1k chr15 451 820 1084281 1084280 F 370 0.00 1350 reject_low 20 ALIGNMENT 249 Y12-4o15.p1k chr13 411 19 6040 6431 C 393 90.59 1350 reject_low 12 ALIGNMENT 0 Y12-4o15.p1k chr04 413 412 1524914 1524939 F 0 0.00 1350 reject_low 17 ALIGNMENT 0 Y12-4o15.p1k chr02 607 632 793722 793808 F 26 0.00 1350 accept_tel 0 ALIGNMENT 208 Y12-4o15.p1k chr12 397 55 11795 12137 C 343 89.21 1350 reject_low 6 ALIGNMENT 0 Y12-4o15.p1k chr10 412 413 7437 7462 C 0 0.00 1350 reject_low 15 ALIGNMENT 243 Y12-4o15.p1k chr16 412 55 6917 7275 C 358 91.62 1350 reject_low 21 ALIGNMENT 247 Y12-4o15.p1k chr03 55 412 315727 316084 F 358 91.90 1350 reject_low 3 ALIGNMENT 226 Y12-4o15.p1k chr07 406 55 482 833 C 352 90.34 1350 reject_low 5 ALIGNMENT 0 Y12-4o15.p1k chr08 412 412 5172 5198 C 1 0.00 1350 reject_low 13 ALIGNMENT 1060 Y12-4o16.p1k chr07 20 1215 940599 941807 F 1196 97.16 1377 accept 0 ALIGNMENT 1017 Y12-4o16.q1k chr07 1183 34 945544 946701 C 1150 97.04 1383 accept 0 ALIGNMENT 1054 Y12-4o17.p1k chr11 19 1253 414519 415756 F 1235 96.68 1383 accept 0 ALIGNMENT 1004 Y12-4o17.q1k chr11 1184 37 418560 419723 C 1148 97.30 1324 accept 0 ALIGNMENT 0 Y12-4o18.q1k chr12 62 104 451419 451418 F 43 0.00 1389 reject_low 1 ALIGNMENT 563 Y12-4o18.q1k chr12 478 1192 489754 490486 F 715 93.99 1389 reject_low 2 ALIGNMENT 0 Y12-4o18.q1k chr12 62 477 489754 489753 F 416 0.00 1389 reject_low 2 ALIGNMENT 897 Y12-4o18.q1k chr12 105 1197 451419 452523 F 1093 95.33 1389 reject_low 1 ALIGNMENT 968 Y12-4o18.q1k chr12 31 1197 460482 461660 F 1167 95.63 1389 accept 0 ALIGNMENT 990 Y12-4o18.p1k chr12 1141 23 464819 465954 C 1119 96.96 1330 accept 0 ALIGNMENT 990 Y12-4o18.p1k chr12 1141 23 455682 456817 C 1119 96.96 1330 reject_low 1 ALIGNMENT 1010 Y12-4o19.p1k chr01 24 1243 47354 48568 F 1220 95.74 1396 accept 0 ALIGNMENT 1054 Y12-4o19.q1k chr01 1233 39 51599 52797 C 1195 96.74 1374 accept 0 ALIGNMENT 1030 Y12-4o20.q1k chr10 25 1273 573653 574910 F 1249 95.28 1402 accept 0 ALIGNMENT 1037 Y12-4o20.p1k chr10 1218 24 577532 578730 C 1195 96.15 1354 accept 0 ALIGNMENT 945 Y12-4o21.p1k chr02 19 1128 378810 379927 F 1110 96.13 1306 accept 0 ALIGNMENT 1030 Y12-4o21.q1k chr02 1281 36 381772 383024 C 1246 95.35 1313 accept 0 ALIGNMENT 954 Y12-4o22.p1k chr14 1175 21 554471 555631 C 1155 95.32 1315 accept 0 ALIGNMENT 936 Y12-4o22.q1k chr14 29 1250 550655 551856 F 1222 94.52 1371 accept 0 ALIGNMENT 1058 Y12-4o23.p1k chr12 17 1230 264520 265745 F 1214 96.95 1319 accept 0 ALIGNMENT 1020 Y12-4o23.q1k chr12 1215 30 268280 269474 C 1186 96.88 1290 accept 0 ALIGNMENT 749 Y12-4o24.p1k chr12 257 1045 489754 490543 F 789 98.48 1315 reject_low 3 ALIGNMENT 1079 Y12-4o24.p1k chr12 52 1285 460718 461955 F 1234 96.52 1315 accept 1 ALIGNMENT 991 Y12-4o24.q1k chr12 1293 33 463838 465105 C 1261 94.13 1335 accept 0,1 ALIGNMENT 0 Y12-4o24.p1k chr12 62 256 489754 489753 F 195 0.00 1315 reject_low 3 ALIGNMENT 959 Y12-4o24.q1k chr12 1184 33 454816 455968 C 1152 95.49 1335 reject_low 2 ALIGNMENT 1079 Y12-4o24.p1k chr12 52 1285 451581 452818 F 1234 96.52 1315 accept 0 ALIGNMENT 946 Y12-4p01.q1k chr04 30 1183 1296543 1297718 F 1154 94.97 1331 accept 0 ALIGNMENT 764 Y12-4p01.p1k chr04 952 21 1300603 1301520 C 932 95.82 1414 accept 0 ALIGNMENT 435 Y12-4p02.q1k chr15 1022 69 45952 46887 C 954 83.65 1343 accept 0 ALIGNMENT 853 Y12-4p03.p1k chr04 1106 25 821528 822604 C 1082 94.45 1379 accept 0 ALIGNMENT 737 Y12-4p03.q1k chr04 30 972 817973 818917 F 943 93.64 1298 accept 0 ALIGNMENT 889 Y12-4p04.q1k chr09 33 1056 120758 121795 F 1024 97.46 1298 accept 0 ALIGNMENT 990 Y12-4p04.p1k chr09 1208 20 125188 126390 C 1189 95.63 1342 accept 0 ALIGNMENT 346 Y12-4p08.p1k chr02 700 1190 300165 300670 F 491 91.24 1358 reject_low 1 ALIGNMENT 0 Y12-4p08.p1k chr02 62 699 300165 300164 F 638 0.00 1358 reject_low 1 ALIGNMENT 997 Y12-4p08.p1k chr04 24 1190 471174 472354 F 1167 96.14 1358 accept 0 ALIGNMENT 941 Y12-4p08.q1k chr04 1213 31 474180 475379 C 1183 95.35 1356 accept 0 ALIGNMENT 0 Y12-4p09.p1k chr02 399 297 91546 91648 C 103 0.00 1402 reject_low 2 ALIGNMENT 0 Y12-4p09.p1k chr02 785 460 91487 91486 C 326 0.00 1402 reject_low 2 ALIGNMENT 45 Y12-4p09.q1k chr02 1096 1251 88523 88681 F 156 77.56 1445 reject_low 2 ALIGNMENT 58 Y12-4p09.p1k chr02 296 128 91649 91817 C 169 79.29 1402 reject_low 2 ALIGNMENT 0 Y12-4p09.p1k chr02 127 62 91818 91817 C 66 0.00 1402 reject_low 2 ALIGNMENT 95 Y12-4p09.q1k chr01 30 214 141255 141438 F 185 84.86 1445 reject_low 1 ALIGNMENT 967 Y12-4p09.q1k chr05 1251 24 363538 364769 C 1228 94.06 1445 accept 0 ALIGNMENT 0 Y12-4p09.q1k chr01 215 787 141438 141437 F 573 0.00 1445 reject_low 1 ALIGNMENT 27 Y12-4p09.p1k chr02 459 400 91486 91545 C 60 83.33 1402 reject_low 2 ALIGNMENT 1007 Y12-4p09.p1k chr05 18 1183 360599 361770 F 1166 96.48 1402 accept 0 ALIGNMENT 0 Y12-4p09.q1k chr02 62 1095 88523 88522 F 1034 0.00 1445 reject_low 2 ALIGNMENT 988 Y12-4p10.p1k chr07 21 1121 590679 591787 F 1101 97.64 1368 accept 0 ALIGNMENT 882 Y12-4p10.q1k chr07 1098 30 595132 596225 C 1069 96.16 1343 accept 0 ALIGNMENT 1067 Y12-4p11.p1k chr15 1195 20 1010461 1011643 C 1176 97.62 1389 accept 0 ALIGNMENT 1008 Y12-4p11.q1k chr15 33 1226 1007140 1008349 F 1194 95.81 1362 accept 0 ALIGNMENT 23 Y12-4p11.p1k chr08 177 211 420572 420606 F 35 97.14 1389 reject_low 1 ALIGNMENT 0 Y12-4p11.p1k chr08 62 176 420572 420571 F 115 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-4p11.p1k chr08 212 864 420606 420605 F 653 0.00 1389 reject_low 1 ALIGNMENT 1011 Y12-4p12.p1k chr16 1141 23 696583 697710 C 1119 97.59 1346 accept 0 ALIGNMENT 1026 Y12-4p12.q1k chr16 28 1168 693338 694491 F 1141 97.28 1365 accept 0 ALIGNMENT 1040 Y12-4p13.q1k chr05 30 1250 107480 108707 F 1221 96.40 1393 accept 0 ALIGNMENT 995 Y12-4p13.p1k chr05 1216 17 112488 113687 C 1200 95.75 1398 accept 0 ALIGNMENT 1026 Y12-4p14.q1k chr08 35 1244 426101 427315 F 1210 96.20 1421 accept 0 ALIGNMENT 964 Y12-4p14.p1k chr08 1205 17 431153 432344 C 1189 94.95 1381 accept 0 ALIGNMENT 1009 Y12-4p15.p1k chr16 1200 18 900880 902057 C 1183 95.77 1416 accept 0 ALIGNMENT 1008 Y12-4p15.q1k chr16 33 1225 898475 899685 F 1193 95.39 1360 accept 0 ALIGNMENT 996 Y12-4p16.q1k chr13 31 1241 567558 568789 F 1211 95.46 1383 accept 0 ALIGNMENT 993 Y12-4p16.p1k chr13 1161 22 570830 571963 C 1140 97.02 1392 accept 0 ALIGNMENT 1006 Y12-4p17.p1k chr09 21 1267 183892 185136 F 1247 94.87 1398 accept 0 ALIGNMENT 999 Y12-4p17.q1k chr09 1160 30 186610 187747 C 1131 96.82 1405 accept 0 ALIGNMENT 0 Y12-4p18.q1k chr10 864 479 115927 115926 C 386 0.00 1419 reject_low 12 ALIGNMENT 0 Y12-4p18.q1k chr09 480 864 197669 197668 F 385 0.00 1419 reject_low 19 ALIGNMENT 0 Y12-4p18.q1k chr05 395 62 487401 487400 C 334 0.00 1419 reject_low 17 ALIGNMENT 0 Y12-4p18.q1k chr10 395 62 116009 116008 C 334 0.00 1419 reject_low 12 ALIGNMENT 0 Y12-4p18.q1k chr02 62 181 259771 259770 F 120 0.00 1419 reject_low 3 ALIGNMENT 0 Y12-4p18.q1k chr09 62 396 197587 197586 F 335 0.00 1419 reject_low 19 ALIGNMENT 0 Y12-4p18.q1k chr13 483 864 290883 290882 F 382 0.00 1419 reject_low 9 ALIGNMENT 46 Y12-4p18.q1k chr03 35 316 82749 83036 F 282 75.18 1419 reject_low 2 ALIGNMENT 0 Y12-4p18.q1k chr15 62 181 595016 595015 F 120 0.00 1419 reject_low 4 ALIGNMENT 0 Y12-4p18.q1k chr07 472 864 541926 541925 F 393 0.00 1419 reject_low 20 ALIGNMENT 0 Y12-4p18.q1k chr03 317 864 83036 83035 F 548 0.00 1419 reject_low 2 ALIGNMENT 46 Y12-4p18.q1k chr02 182 293 259771 259885 F 112 83.93 1419 reject_low 3 ALIGNMENT 0 Y12-4p18.q1k chr03 220 62 124228 124227 C 159 0.00 1419 reject_low 5 ALIGNMENT 0 Y12-4p18.q1k chr02 294 864 259885 259884 F 571 0.00 1419 reject_low 3 ALIGNMENT 0 Y12-4p18.q1k chr11 392 62 141101 141100 C 331 0.00 1419 reject_low 11 ALIGNMENT 0 Y12-4p18.q1k chr11 181 62 517232 517231 C 120 0.00 1419 reject_low 6 ALIGNMENT 0 Y12-4p18.q1k chr03 864 307 124141 124140 C 558 0.00 1419 reject_low 5 ALIGNMENT 74 Y12-4p18.q1k chr16 481 399 210180 210262 C 83 96.39 1419 reject_low 13 ALIGNMENT 77 Y12-4p18.q1k chr05 472 396 487324 487400 C 77 100.00 1419 reject_low 17 ALIGNMENT 0 Y12-4p18.q1k chr03 864 481 82452 82451 C 384 0.00 1419 reject_low 7 ALIGNMENT 0 Y12-4p18.q1k chr02 62 397 645161 645160 F 336 0.00 1419 reject_low 16 ALIGNMENT 0 Y12-4p18.q1k chr05 480 864 177178 177177 F 385 0.00 1419 reject_low 10 ALIGNMENT 0 Y12-4p18.q1k chr02 480 864 645242 645241 F 385 0.00 1419 reject_low 16 ALIGNMENT 26 Y12-4p18.q1k chr12 221 293 796992 797066 F 73 80.82 1419 reject_low 21 ALIGNMENT 0 Y12-4p18.q1k chr05 62 397 177097 177096 F 336 0.00 1419 reject_low 10 ALIGNMENT 0 Y12-4p18.q1k chr03 392 62 82539 82538 C 331 0.00 1419 reject_low 7 ALIGNMENT 74 Y12-4p18.q1k chr07 398 471 541853 541926 F 74 100.00 1419 reject_low 20 ALIGNMENT 145 Y12-4p18.q1k chr05 32 201 354187 354356 F 170 97.65 1419|0,3 accept 0 ALIGNMENT 0 Y12-4p18.q1k chr09 473 864 370487 370486 F 392 0.00 1419 reject_low 8 ALIGNMENT 42 Y12-4p18.q1k chr03 306 221 124140 124227 C 86 86.05 1419 reject_low 5 ALIGNMENT 0 Y12-4p18.q1k chr03 293 864 85118 85117 F 572 0.00 1419 reject_low 14 ALIGNMENT 0 Y12-4p18.q1k chr05 864 473 487325 487324 C 392 0.00 1419 reject_low 17 ALIGNMENT 0 Y12-4p18.q1k chr16 398 62 210263 210262 C 337 0.00 1419 reject_low 13 ALIGNMENT 0 Y12-4p18.q1k chr09 62 391 370407 370406 F 330 0.00 1419 reject_low 8 ALIGNMENT 0 Y12-4p18.q1k chr05 199 198 354354 354729 F 0 0.00 1419 accept 0 ALIGNMENT 0 Y12-4p18.q1k chr16 864 482 210181 210180 C 383 0.00 1419 reject_low 13 ALIGNMENT 73 Y12-4p18.q1k chr07 399 471 328586 328658 F 73 100.00 1419 reject_low 18 ALIGNMENT 0 Y12-4p18.q1k chr07 864 483 401520 401519 C 382 0.00 1419 reject_low 1 ALIGNMENT 62 Y12-4p18.q1k chr09 397 479 197587 197669 F 83 91.57 1419 reject_low 19 ALIGNMENT 79 Y12-4p18.q1k chr11 471 393 141022 141100 C 79 100.00 1419 reject_low 11 ALIGNMENT 79 Y12-4p18.q1k chr03 480 393 82451 82538 C 88 96.59 1419 reject_low 7 ALIGNMENT 43 Y12-4p18.q1k chr07 182 293 535410 535524 F 112 83.04 1419 reject_low 20 ALIGNMENT 0 Y12-4p18.q1k chr07 62 398 328586 328585 F 337 0.00 1419 reject_low 18 ALIGNMENT 21 Y12-4p18.q1k chr03 35 292 84860 85118 F 258 73.26 1419 reject_low 14 ALIGNMENT 0 Y12-4p18.q1k chr07 472 864 328658 328657 F 393 0.00 1419 reject_low 18 ALIGNMENT 912 Y12-4p18.p1k chr05 1014 19 358688 359695 C 996 98.09 1321 accept 0 ALIGNMENT 78 Y12-4p18.q1k chr09 392 472 370407 370487 F 81 98.77 1419 reject_low 8 ALIGNMENT 0 Y12-4p18.q1k chr12 62 220 796992 796991 F 159 0.00 1419 reject_low 21 ALIGNMENT 0 Y12-4p18.q1k chr07 294 397 535525 541852 F 104 0.00 1419 reject_low 20 ALIGNMENT 72 Y12-4p18.q1k chr12 399 470 797178 797249 F 72 100.00 1419 reject_low 21 ALIGNMENT 0 Y12-4p18.q1k chr11 864 472 141023 141022 C 393 0.00 1419 reject_low 11 ALIGNMENT 0 Y12-4p18.q1k chr03 293 864 90745 90744 F 572 0.00 1419 reject_low 15 ALIGNMENT 0 Y12-4p18.q1k chr15 294 864 595130 595129 F 571 0.00 1419 reject_low 4 ALIGNMENT 0 Y12-4p18.q1k chr12 294 398 797067 797177 F 105 0.00 1419 reject_low 21 ALIGNMENT 818 Y12-4p18.q1k chr05 196 1187 354727 355708 F 992 95.46 1419|3,0 accept 0 ALIGNMENT 94 Y12-4p18.q1k chr07 482 316 401519 401686 C 167 86.83 1419 reject_low 1 ALIGNMENT 82 Y12-4p18.q1k chr05 398 479 177097 177178 F 82 100.00 1419 reject_low 10 ALIGNMENT 0 Y12-4p18.q1k chr11 864 294 517118 517117 C 571 0.00 1419 reject_low 6 ALIGNMENT 0 Y12-4p18.q1k chr07 62 181 535410 535409 F 120 0.00 1419 reject_low 20 ALIGNMENT 76 Y12-4p18.q1k chr02 398 479 645161 645242 F 82 97.56 1419 reject_low 16 ALIGNMENT 43 Y12-4p18.q1k chr11 293 182 517117 517231 C 112 83.04 1419 reject_low 6 ALIGNMENT 0 Y12-4p18.q1k chr13 62 395 290797 290796 F 334 0.00 1419 reject_low 9 ALIGNMENT 46 Y12-4p18.q1k chr15 182 293 595016 595130 F 112 83.93 1419 reject_low 4 ALIGNMENT 21 Y12-4p18.q1k chr03 35 292 90487 90745 F 258 73.26 1419 reject_low 15 ALIGNMENT 0 Y12-4p18.q1k chr12 471 864 797249 797248 F 394 0.00 1419 reject_low 21 ALIGNMENT 75 Y12-4p18.q1k chr13 396 482 290797 290883 F 87 95.40 1419 reject_low 9 ALIGNMENT 0 Y12-4p18.q1k chr07 315 62 401687 401686 C 254 0.00 1419 reject_low 1 ALIGNMENT 80 Y12-4p18.q1k chr10 478 396 115926 116008 C 83 98.80 1419 reject_low 12 ALIGNMENT 1061 Y12-4p19.p1k chr09 19 1290 82695 83970 F 1272 95.28 1361 accept 0 ALIGNMENT 1021 Y12-4p19.q1k chr09 1219 30 85658 86851 C 1190 96.05 1386 accept 0 ALIGNMENT 930 Y12-4p21.p1k chr11 1153 15 61422 62571 C 1139 95.61 1319 accept 0 ALIGNMENT 957 Y12-4p21.q1k chr11 29 1106 56505 57568 F 1078 97.68 1416 accept 0 ALIGNMENT 960 Y12-4p22.q1k chr07 1227 30 50619 51824 C 1198 95.08 1353 accept 0 ALIGNMENT 949 Y12-4p22.p1k chr07 22 1140 47086 48199 F 1119 96.34 1338 accept 0 ALIGNMENT 1013 Y12-4p23.q1k chr08 32 1261 517875 519099 F 1230 95.45 1339 accept 0 ALIGNMENT 1048 Y12-4p23.p1k chr08 1301 21 520818 522100 C 1281 94.93 1313 accept 0 ALIGNMENT 984 Y12-5a01.q1k chr16 41 1150 590475 591592 F 1110 97.21 1256 accept_chi 0 ALIGNMENT 968 Y12-5a01.p1k chr05 1150 20 152270 153414 C 1131 96.29 1265 accept_chi 1 ALIGNMENT 49 Y12-5a02.p1k chr06 79 20 31622 31682 C 60 95.00 1343 reject_low 7 ALIGNMENT 0 Y12-5a02.p1k chr12 458 847 468930 468929 F 390 0.00 1343 reject_low 2 ALIGNMENT 0 Y12-5a02.p1k chr12 458 847 472582 472581 F 390 0.00 1343 reject_low 4 ALIGNMENT 866 Y12-5a02.q1k chr12 1019 30 454920 455895 C 990 97.27 1409 reject_low 1 ALIGNMENT 0 Y12-5a02.p1k chr12 473 847 489481 489480 F 375 0.00 1343 reject_low 3 ALIGNMENT 0 Y12-5a02.p1k chr06 847 80 31623 31622 C 768 0.00 1343 reject_low 7 ALIGNMENT 0 Y12-5a02.p1k chr12 458 847 482162 482161 F 390 0.00 1343 reject_low 5 ALIGNMENT 119 Y12-5a02.p1k chr12 339 457 482044 482162 F 119 100.00 1343 reject_low 5 ALIGNMENT 119 Y12-5a02.p1k chr12 339 457 485696 485814 F 119 100.00 1343 reject_low 6 ALIGNMENT 128 Y12-5a02.p1k chr12 339 472 489348 489481 F 134 98.51 1343 reject_low 3 ALIGNMENT 119 Y12-5a02.p1k chr12 339 457 472464 472582 F 119 100.00 1343 reject_low 4 ALIGNMENT 0 Y12-5a02.p1k chr12 458 847 485814 485813 F 390 0.00 1343 reject_low 6 ALIGNMENT 866 Y12-5a02.q1k chr12 1019 30 464057 465032 C 990 97.27 1409 accept 0 ALIGNMENT 0 Y12-5a02.p1k chr12 62 338 489348 489347 F 277 0.00 1343 reject_low 3 ALIGNMENT 855 Y12-5a02.p1k chr12 20 1173 459355 460545 F 1154 92.98 1343 accept 0 ALIGNMENT 0 Y12-5a02.p1k chr12 62 338 485696 485695 F 277 0.00 1343 reject_low 6 ALIGNMENT 0 Y12-5a02.p1k chr12 62 338 482044 482043 F 277 0.00 1343 reject_low 5 ALIGNMENT 422 Y12-5a02.p1k chr12 20 457 468492 468930 F 438 99.54 1343 reject_low 2 ALIGNMENT 0 Y12-5a02.p1k chr12 62 338 472464 472463 F 277 0.00 1343 reject_low 4 ALIGNMENT 0 Y12-5a03.p1k chr14 62 526 560684 560683 F 465 0.00 1287 reject_low 3 ALIGNMENT 0 Y12-5a03.p1k chr10 609 875 59173 59172 F 267 0.00 1287 reject_low 11 ALIGNMENT 76 Y12-5a03.p1k chr15 529 607 354034 354112 F 79 98.73 1287 reject_low 10 ALIGNMENT 0 Y12-5a03.p1k chr09 526 62 325827 325826 C 465 0.00 1287 reject_low 2 ALIGNMENT 0 Y12-5a03.p1k chr15 875 609 113801 113800 C 267 0.00 1287 reject_low 4 ALIGNMENT 0 Y12-5a03.p1k chr14 875 610 104804 104803 C 266 0.00 1287 reject_low 6 ALIGNMENT 0 Y12-5a03.p1k chr02 875 608 266379 266378 C 268 0.00 1287 reject_low 7 ALIGNMENT 0 Y12-5a03.p1k chr10 62 534 59100 59099 F 473 0.00 1287 reject_low 11 ALIGNMENT 0 Y12-5a03.p1k chr15 526 62 113882 113881 C 465 0.00 1287 reject_low 4 ALIGNMENT 0 Y12-5a03.p1k chr02 527 62 266458 266457 C 466 0.00 1287 reject_low 7 ALIGNMENT 76 Y12-5a03.p1k chr14 609 527 104803 104886 C 83 97.59 1287 reject_low 6 ALIGNMENT 0 Y12-5a03.p1k chr03 875 609 295480 295479 C 267 0.00 1287 reject_low 8 ALIGNMENT 76 Y12-5a03.p1k chr04 529 608 434254 434334 F 80 98.75 1287 reject_low 9 ALIGNMENT 78 Y12-5a03.p1k chr15 608 527 113800 113881 C 82 98.78 1287 reject_low 4 ALIGNMENT 1008 Y12-5a03.q1k chr16 36 1231 324008 325209 F 1196 95.74 1231 accept_chi 0 ALIGNMENT 86 Y12-5a03.p1k chr09 612 527 325741 325826 C 86 100.00 1287 reject_low 2 ALIGNMENT 0 Y12-5a03.p1k chr08 610 875 116176 116175 F 266 0.00 1287 reject_low 5 ALIGNMENT 0 Y12-5a03.p1k chr14 612 875 560770 560769 F 264 0.00 1287 reject_low 3 ALIGNMENT 0 Y12-5a03.p1k chr04 609 875 434334 434333 F 267 0.00 1287 reject_low 9 ALIGNMENT 74 Y12-5a03.p1k chr10 535 608 59100 59173 F 74 100.00 1287 reject_low 11 ALIGNMENT 78 Y12-5a03.p1k chr08 529 609 116096 116176 F 81 98.77 1287 reject_low 5 ALIGNMENT 0 Y12-5a03.p1k chr15 62 528 354034 354033 F 467 0.00 1287 reject_low 10 ALIGNMENT 0 Y12-5a03.p1k chr04 62 528 434254 434253 F 467 0.00 1287 reject_low 9 ALIGNMENT 0 Y12-5a03.p1k chr08 62 528 116096 116095 F 467 0.00 1287 reject_low 5 ALIGNMENT 75 Y12-5a03.p1k chr14 527 611 560684 560770 F 85 96.47 1287 reject_low 3 ALIGNMENT 77 Y12-5a03.p1k chr02 607 528 266378 266457 C 80 98.75 1287 reject_low 7 ALIGNMENT 0 Y12-5a03.p1k chr09 875 613 325742 325741 C 263 0.00 1287 reject_low 2 ALIGNMENT 857 Y12-5a03.p1k chr09 1193 21 174440 175643 C 1173 92.41 1287 accept_chi 1 ALIGNMENT 0 Y12-5a03.p1k chr14 526 62 104887 104886 C 465 0.00 1287 reject_low 6 ALIGNMENT 0 Y12-5a03.p1k chr15 608 875 354112 354111 F 268 0.00 1287 reject_low 10 ALIGNMENT 0 Y12-5a03.p1k chr03 528 62 295559 295558 C 467 0.00 1287 reject_low 8 ALIGNMENT 77 Y12-5a03.p1k chr03 608 529 295479 295558 C 80 98.75 1287 reject_low 8 ALIGNMENT 0 Y12-5a04.p1k chr12 62 512 459865 459864 F 451 0.00 1350 reject_low 1 ALIGNMENT 355 Y12-5a04.p1k chr08 16 431 26486 26902 F 416 96.15 1350 accept 0 ALIGNMENT 98 Y12-5a04.p1k chr12 513 779 459865 460134 F 267 80.90 1350 reject_low 1 ALIGNMENT 655 Y12-5a04.q1k chr08 796 31 30339 31102 C 766 96.61 1423 accept 0 ALIGNMENT 862 Y12-5a05.q1k chr12 1035 33 1049730 1050715 C 1003 97.51 1236 accept 0 ALIGNMENT 665 Y12-5a05.p1k chr12 18 769 1045388 1046141 F 752 97.61 1295 accept 0 ALIGNMENT 1008 Y12-5a06.q1k chr02 1201 36 269197 270357 C 1166 96.14 1228 accept 0 ALIGNMENT 866 Y12-5a06.p1k chr02 20 1015 266416 267425 F 996 97.19 1263 accept 0 ALIGNMENT 627 Y12-5a07.p1k chr01 18 723 117199 117906 F 706 97.73 1264 accept 0 ALIGNMENT 881 Y12-5a07.q1k chr01 1027 34 121537 122521 C 994 97.28 1255 accept 0 ALIGNMENT 0 Y12-5a08.p1k chr02 62 568 266968 266967 F 507 0.00 1329 reject_low 1 ALIGNMENT 0 Y12-5a08.q1k chr02 584 167 269812 269811 C 418 0.00 1270 reject_low 1 ALIGNMENT 423 Y12-5a08.q1k chr16 590 32 514731 515289 C 559 92.49 1270 accept 0 ALIGNMENT 310 Y12-5a08.q1k chr02 1018 585 269386 269811 C 434 92.17 1270 reject_low 1 ALIGNMENT 449 Y12-5a08.p1k chr16 18 535 509472 509989 F 518 96.72 1329 accept 0 ALIGNMENT 150 Y12-5a08.p1k chr02 569 856 266968 267254 F 288 85.42 1329 reject_low 1 ALIGNMENT 981 Y12-5a09.q1k chr12 1243 32 464483 465709 C 1212 94.55 1266 manual 1 ALIGNMENT 977 Y12-5a09.q1k chr12 1160 32 455438 456572 C 1129 96.10 1266 manual 2 ALIGNMENT 781 Y12-5a09.p1k chr04 205 1249 1408140 1409198 F 1045 93.01 1297 accept_chi 0 ALIGNMENT 29 Y12-5a10.p1k chr11 16 79 517366 517429 F 64 85.94 1369 accept_chi 1 ALIGNMENT 0 Y12-5a10.p1k chr11 80 737 517429 517428 F 658 0.00 1369 accept_chi 1 ALIGNMENT 902 Y12-5a10.q1k chr09 1072 30 303340 304374 C 1043 96.93 1371 accept_chi 0 ALIGNMENT 997 Y12-5a11.p1k chr12 1115 25 753942 755038 C 1091 98.17 1239 accept 0 ALIGNMENT 993 Y12-5a11.q1k chr12 40 1225 750766 751955 F 1186 96.71 1232 accept 0 ALIGNMENT 677 Y12-5a12.p1k chr12 745 22 463595 464317 C 724 98.34 1388 accept_chi 2 ALIGNMENT 879 Y12-5a12.q1k chr12 28 1066 578136 579168 F 1039 96.73 1269 accept_chi 0 ALIGNMENT 677 Y12-5a12.p1k chr12 745 22 454458 455180 C 724 98.34 1388 accept_chi 1 ALIGNMENT 960 Y12-5a13.p1k chr13 1116 26 566172 567276 C 1091 97.07 1236 accept 0 ALIGNMENT 897 Y12-5a13.q1k chr13 36 1032 561900 562897 F 997 97.49 1213 accept 0 ALIGNMENT 864 Y12-5a14.p1k chr02 1070 24 761668 762728 C 1047 96.56 1268 accept 0 ALIGNMENT 767 Y12-5a14.q1k chr02 33 886 758161 759014 F 854 97.66 1221 accept 0 ALIGNMENT 789 Y12-5a15.p1k chr16 25 892 673207 674075 F 868 97.35 1251 accept 0 ALIGNMENT 727 Y12-5a15.q1k chr16 820 33 676044 676831 C 788 98.22 1326 accept 0 ALIGNMENT 924 Y12-5a16.q1k chr14 1143 27 416602 417709 C 1117 96.06 1363 accept 0 ALIGNMENT 41 Y12-5a16.p1k chr15 721 784 723818 723881 F 64 89.06 1308 reject_low 1 ALIGNMENT 0 Y12-5a16.p1k chr15 785 829 723881 723880 F 45 0.00 1308 reject_low 1 ALIGNMENT 969 Y12-5a16.p1k chr14 31 1187 413741 414907 F 1157 95.25 1308 accept 0 ALIGNMENT 0 Y12-5a16.p1k chr15 62 720 723818 723817 F 659 0.00 1308 reject_low 1 ALIGNMENT 972 Y12-5a17.p1k chr14 25 1135 23949 25065 F 1111 97.12 1268 accept 0 ALIGNMENT 969 Y12-5a17.q1k chr14 1136 39 27454 28566 C 1098 97.36 1193 accept 0 ALIGNMENT 915 Y12-5a18.q1k chr14 30 1126 653215 654300 F 1097 95.26 1255 accept 0 ALIGNMENT 923 Y12-5a18.p1k chr14 1128 19 657413 658542 C 1110 95.77 1280 accept 0 ALIGNMENT 22 Y12-5a19.p1k chr09 27 49 394819 394841 F 23 100.00 1238 reject_bad_break 0 ALIGNMENT 831 Y12-5a19.p1k chr09 50 1033 394829 395817 F 984 95.22 1238 reject_bad_break 0 ALIGNMENT 891 Y12-5a19.q1k chr09 1049 35 397980 398985 C 1015 96.85 1208 reject_bad_break 0 ALIGNMENT 0 Y12-5a19.p1k chr09 50 49 394842 394828 F 0 0.00 1238 reject_bad_break 0 ALIGNMENT 770 Y12-5a20.p1k chr07 17 930 264432 265340 F 914 95.95 1424 accept 0 ALIGNMENT 519 Y12-5a20.q1k chr07 869 4 268758 269606 C 866 89.03 1199 accept 0 ALIGNMENT 990 Y12-5a21.p1k chr12 1184 20 947225 948392 C 1165 96.05 1192 accept_trans 0 ALIGNMENT 1031 Y12-5a21.q1k chr12 36 1261 938293 939516 F 1226 95.68 1288 accept_trans 0 ALIGNMENT 699 Y12-5a22.p1k chr13 827 23 87934 88731 C 805 97.76 1293 accept 0 ALIGNMENT 759 Y12-5a22.q1k chr13 36 890 84678 85529 F 855 98.01 1393 accept 0 ALIGNMENT 447 Y12-5a23.q1k chr12 38 962 938306 939215 F 925 84.32 1355 accept_trans 0 ALIGNMENT 233 Y12-5a23.p1k chr12 1029 401 947481 948106 C 629 79.65 1308 accept_trans 0 ALIGNMENT 929 Y12-5a24.p1k chr10 1119 21 398094 399191 C 1099 95.81 1319 accept 0 ALIGNMENT 967 Y12-5a24.q1k chr10 39 1116 393994 395060 F 1078 97.77 1167 accept 0 ALIGNMENT 0 Y12-5b01.q1k chr04 62 373 16074 16073 F 312 0.00 1182 reject_low 1 ALIGNMENT 0 Y12-5b01.q1k chr06 409 490 12834 12915 F 82 0.00 1182 accept 0 ALIGNMENT 360 Y12-5b01.q1k chr06 491 1014 12916 13442 F 524 90.27 1182 accept 0 ALIGNMENT 0 Y12-5b01.q1k chr10 373 62 729642 729641 C 312 0.00 1182 reject_low 2 ALIGNMENT 0 Y12-5b01.q1k chr06 232 373 12643 12798 F 142 0.00 1182 accept 0 ALIGNMENT 367 Y12-5b01.q1k chr04 374 1155 16074 16864 F 782 83.63 1182 reject_low 1 ALIGNMENT 25 Y12-5b01.q1k chr14 124 231 14434 14545 F 108 76.85 1182 reject_low 3 ALIGNMENT 0 Y12-5b01.q1k chr14 232 373 14546 14701 F 142 0.00 1182 reject_low 3 ALIGNMENT 25 Y12-5b01.q1k chr06 124 231 12531 12642 F 108 76.85 1182 accept 0 ALIGNMENT 0 Y12-5b01.q1k chr14 409 490 14737 14818 F 82 0.00 1182 reject_low 3 ALIGNMENT 21 Y12-5b01.q1k chr14 374 408 14702 14736 F 35 88.57 1182 reject_low 3 ALIGNMENT 21 Y12-5b01.q1k chr06 374 408 12799 12833 F 35 88.57 1182 accept 0 ALIGNMENT 630 Y12-5b01.p1k chr06 991 27 17649 18598 C 965 90.47 1453 accept 0 ALIGNMENT 0 Y12-5b01.q1k chr06 62 123 12531 12530 F 62 0.00 1182 accept 0 ALIGNMENT 354 Y12-5b01.q1k chr10 1014 374 728998 729641 C 641 86.58 1182 reject_low 2 ALIGNMENT 0 Y12-5b01.q1k chr14 62 123 14434 14433 F 62 0.00 1182 reject_low 3 ALIGNMENT 356 Y12-5b01.q1k chr14 491 1020 14819 15352 F 530 89.81 1182 reject_low 3 ALIGNMENT 43 Y12-5b02.q1k chr10 57 246 367226 367415 F 190 74.21 1339 reject_low 11 ALIGNMENT 22 Y12-5b02.q1k chr10 285 327 367511 367553 F 43 83.72 1339|11,0 reject_low 10,11,12 ALIGNMENT 88 Y12-5b02.q1k chr10 182 363 367180 367361 F 182 82.97 1339 reject_low 3 ALIGNMENT 0 Y12-5b02.q1k chr10 422 879 366792 366791 F 458 0.00 1339 reject_low 6 ALIGNMENT 44 Y12-5b02.q1k chr10 188 335 366673 366820 F 148 77.03 1339 reject_low 9 ALIGNMENT 0 Y12-5b02.q1k chr10 62 110 367337 367336 F 49 0.00 1339 reject_low 12 ALIGNMENT 43 Y12-5b02.q1k chr10 230 421 366886 367077 F 192 74.48 1339 reject_low 5 ALIGNMENT 0 Y12-5b02.q1k chr10 62 229 366886 366885 F 168 0.00 1339 reject_low 5 ALIGNMENT 0 Y12-5b02.q1k chr10 247 284 367416 367510 F 38 0.00 1339 reject_low 11 ALIGNMENT 998 Y12-5b02.q1k chr10 33 1177 367087 368238 F 1145 96.42 1339 accept 0 ALIGNMENT 0 Y12-5b02.q1k chr10 361 879 367301 367300 F 519 0.00 1339 reject_low 8 ALIGNMENT 0 Y12-5b02.q1k chr10 361 879 366788 366787 F 519 0.00 1339 reject_low 7 ALIGNMENT 173 Y12-5b02.q1k chr10 33 335 366802 367105 F 303 86.14 1339 reject_low 1 ALIGNMENT 0 Y12-5b02.q1k chr10 62 343 366715 366714 F 282 0.00 1339 reject_low 6 ALIGNMENT 0 Y12-5b02.q1k chr10 62 187 366673 366672 F 126 0.00 1339 reject_low 9 ALIGNMENT 26 Y12-5b02.q1k chr10 344 421 366715 366792 F 78 78.21 1339 reject_low 6 ALIGNMENT 0 Y12-5b02.q1k chr10 336 879 367105 367104 F 544 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-5b02.q1k chr10 62 170 367112 367111 F 109 0.00 1339 reject_low 8 ALIGNMENT 0 Y12-5b02.q1k chr10 499 879 367382 367381 F 381 0.00 1339 reject_low 2 ALIGNMENT 0 Y12-5b02.q1k chr10 328 879 367553 367552 F 552 0.00 1339 reject_low 10,11,12 ALIGNMENT 0 Y12-5b02.q1k chr10 256 284 367482 367510 F 29 0.00 1339 reject_low 12 ALIGNMENT 31 Y12-5b02.q1k chr10 111 255 367337 367481 F 145 73.79 1339 reject_low 12 ALIGNMENT 47 Y12-5b02.q1k chr10 110 498 366994 367382 F 389 70.95 1339 reject_low 2 ALIGNMENT 0 Y12-5b02.q1k chr10 62 124 367237 367236 F 63 0.00 1339 reject_low 10 ALIGNMENT 53 Y12-5b02.q1k chr10 245 360 366673 366788 F 116 81.90 1339 reject_low 7 ALIGNMENT 45 Y12-5b02.q1k chr10 171 360 367112 367301 F 190 74.74 1339 reject_low 8 ALIGNMENT 88 Y12-5b02.q1k chr10 125 306 367237 367418 F 182 82.97 1339|0,11 reject_low 10 ALIGNMENT 0 Y12-5b02.q1k chr10 62 181 367180 367179 F 120 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-5b02.q1k chr10 62 115 366829 366828 F 54 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-5b02.q1k chr10 364 879 367361 367360 F 516 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-5b02.q1k chr10 296 295 367408 367521 F 0 0.00 1339 reject_low 10 ALIGNMENT 1042 Y12-5b02.p1k chr10 1257 18 369219 370469 C 1240 95.97 1335 accept 0 ALIGNMENT 0 Y12-5b02.q1k chr10 62 109 366994 366993 F 48 0.00 1339 reject_low 2 ALIGNMENT 0 Y12-5b02.q1k chr10 422 879 367077 367076 F 458 0.00 1339 reject_low 5 ALIGNMENT 73 Y12-5b02.q1k chr10 116 360 366829 367073 F 245 76.73 1339 reject_low 4 ALIGNMENT 0 Y12-5b02.q1k chr10 62 244 366673 366672 F 183 0.00 1339 reject_low 7 ALIGNMENT 0 Y12-5b02.q1k chr10 361 879 367073 367072 F 519 0.00 1339 reject_low 4 ALIGNMENT 0 Y12-5b02.q1k chr10 336 879 366820 366819 F 544 0.00 1339 reject_low 9 ALIGNMENT 0 Y12-5b03.q1k chr14 325 466 14546 14701 F 142 0.00 1281 reject_low 3 ALIGNMENT 25 Y12-5b03.q1k chr06 217 324 12531 12642 F 108 76.85 1281 accept 0 ALIGNMENT 0 Y12-5b03.q1k chr10 466 62 729642 729641 C 405 0.00 1281 reject_low 1 ALIGNMENT 0 Y12-5b03.q1k chr14 502 583 14737 14818 F 82 0.00 1281 reject_low 3 ALIGNMENT 21 Y12-5b03.q1k chr14 467 501 14702 14736 F 35 88.57 1281 reject_low 3 ALIGNMENT 0 Y12-5b03.q1k chr06 502 583 12834 12915 F 82 0.00 1281 accept 0 ALIGNMENT 21 Y12-5b03.q1k chr06 467 501 12799 12833 F 35 88.57 1281 accept 0 ALIGNMENT 526 Y12-5b03.q1k chr04 467 1281 16074 16899 F 815 88.83 1281 reject_low 2 ALIGNMENT 0 Y12-5b03.q1k chr06 62 216 12531 12530 F 155 0.00 1281 accept 0 ALIGNMENT 991 Y12-5b03.p1k chr06 1191 23 17421 18606 C 1169 95.64 1317 accept 0 ALIGNMENT 546 Y12-5b03.q1k chr14 584 1281 14819 15527 F 698 93.12 1281 reject_low 3 ALIGNMENT 0 Y12-5b03.q1k chr04 62 466 16074 16073 F 405 0.00 1281 reject_low 2 ALIGNMENT 25 Y12-5b03.q1k chr14 217 324 14434 14545 F 108 76.85 1281 reject_low 3 ALIGNMENT 0 Y12-5b03.q1k chr14 62 216 14434 14433 F 155 0.00 1281 reject_low 3 ALIGNMENT 0 Y12-5b03.q1k chr06 325 466 12643 12798 F 142 0.00 1281 accept 0 ALIGNMENT 540 Y12-5b03.q1k chr06 584 1281 12916 13624 F 698 92.84 1281 accept 0 ALIGNMENT 544 Y12-5b03.q1k chr10 1281 467 728816 729641 C 815 89.57 1281 reject_low 1 ALIGNMENT 881 Y12-5b05.p1k chr15 1050 24 923238 924264 C 1027 96.20 1317 accept 0 ALIGNMENT 875 Y12-5b05.q1k chr15 29 1009 919661 920629 F 981 97.35 1298 accept 0 ALIGNMENT 20 Y12-5b07.q1k chr05 803 843 81208 81248 F 41 92.68 1306 reject_low 1 ALIGNMENT 832 Y12-5b07.q1k chr04 1060 37 864724 865746 C 1024 95.70 1306 accept 0 ALIGNMENT 0 Y12-5b07.q1k chr05 62 802 81208 81207 F 741 0.00 1306 reject_low 1 ALIGNMENT 796 Y12-5b07.p1k chr04 16 1006 860826 861811 F 991 94.55 1358 accept 0 ALIGNMENT 851 Y12-5b08.p1k chr10 1136 29 313219 314319 C 1108 93.14 1357 accept 0 ALIGNMENT 849 Y12-5b08.q1k chr10 33 1131 309792 310870 F 1099 94.90 1301 accept 0 ALIGNMENT 98 Y12-5b09.q1k chr15 73 184 301095 301205 F 112 96.43 1316 reject_low 6 ALIGNMENT 0 Y12-5b09.q1k chr15 187 808 464561 464560 F 622 0.00 1316 reject_low 5 ALIGNMENT 102 Y12-5b09.q1k chr12 75 185 92547 92657 F 111 97.30 1316 reject_low 4 ALIGNMENT 101 Y12-5b09.q1k chr01 74 177 139153 139256 F 104 99.04 1316 reject_low 7 ALIGNMENT 100 Y12-5b09.q1k chr14 67 177 568109 568218 F 111 97.30 1316 reject_low 2 ALIGNMENT 100 Y12-5b09.q1k chr14 67 177 547088 547197 F 111 97.30 1316 reject_low 1 ALIGNMENT 0 Y12-5b09.q1k chr01 178 808 139256 139255 F 631 0.00 1316 reject_low 7 ALIGNMENT 97 Y12-5b09.q1k chr08 177 75 388896 388998 C 103 98.06 1316 reject_low 8 ALIGNMENT 0 Y12-5b09.q1k chr13 808 185 196062 196061 C 624 0.00 1316 reject_low 3 ALIGNMENT 104 Y12-5b09.q1k chr13 184 75 196061 196170 C 110 98.18 1316 reject_low 3 ALIGNMENT 871 Y12-5b09.p1k chr06 1066 21 105745 106787 C 1046 95.12 1363 accept 0 ALIGNMENT 81 Y12-5b09.q1k chr15 75 184 980678 980789 F 110 91.82 1316 reject_low 9 ALIGNMENT 0 Y12-5b09.q1k chr08 808 178 388897 388896 C 631 0.00 1316 reject_low 8 ALIGNMENT 0 Y12-5b09.q1k chr14 178 808 547197 547196 F 631 0.00 1316 reject_low 1 ALIGNMENT 0 Y12-5b09.q1k chr15 185 808 301205 301204 F 624 0.00 1316 reject_low 6 ALIGNMENT 0 Y12-5b09.q1k chr15 185 808 980789 980788 F 624 0.00 1316 reject_low 9 ALIGNMENT 1020 Y12-5b09.q1k chr06 27 1233 101322 102524 F 1207 95.86 1316 accept 0 ALIGNMENT 97 Y12-5b09.q1k chr15 75 186 464451 464561 F 112 96.43 1316 reject_low 5 ALIGNMENT 0 Y12-5b09.q1k chr12 186 808 92657 92656 F 623 0.00 1316 reject_low 4 ALIGNMENT 0 Y12-5b09.q1k chr14 178 808 568218 568217 F 631 0.00 1316 reject_low 2 ALIGNMENT 782 Y12-5b10.q1k chr15 942 24 248885 249806 C 919 95.97 1385 accept 0 ALIGNMENT 806 Y12-5b10.p1k chr15 23 1012 245259 246247 F 990 95.45 1424 accept 0 ALIGNMENT 701 Y12-5b11.q1k chr08 30 827 492619 493417 F 798 97.99 1346 accept_chi 0 ALIGNMENT 613 Y12-5b11.p1k chr05 706 24 230934 231615 C 683 97.80 1332 accept_chi 1 ALIGNMENT 937 Y12-5b12.q1k chr16 30 1096 301567 302631 F 1067 96.81 1272 accept 0 ALIGNMENT 921 Y12-5b12.p1k chr16 1212 22 305131 306316 C 1191 94.04 1321 accept 0 ALIGNMENT 0 Y12-5b13.q1k chr04 62 694 844564 844563 F 633 0.00 1280 reject_low 2 ALIGNMENT 0 Y12-5b13.q1k chr04 723 798 844591 844590 F 76 0.00 1280 reject_low 2 ALIGNMENT 0 Y12-5b13.q1k chr04 62 760 844498 844497 F 699 0.00 1280 reject_low 1 ALIGNMENT 22 Y12-5b13.q1k chr04 695 722 844564 844591 F 28 92.86 1280 reject_low 2 ALIGNMENT 22 Y12-5b13.q1k chr04 761 788 844498 844525 F 28 92.86 1280 reject_low 1 ALIGNMENT 839 Y12-5b13.p1k chr04 1000 22 846835 847817 C 979 96.42 1273 accept 0 ALIGNMENT 883 Y12-5b13.q1k chr04 31 1004 843835 844796 F 974 97.84 1280 accept 0 ALIGNMENT 827 Y12-5b14.p1k chr11 18 964 174954 175896 F 947 97.04 1374 accept 0 ALIGNMENT 902 Y12-5b14.q1k chr11 1087 32 179413 180464 C 1056 96.21 1269 accept 0 ALIGNMENT 841 Y12-5b15.p1k chr07 1008 16 658724 659721 C 993 96.68 1306 accept 0 ALIGNMENT 905 Y12-5b15.q1k chr07 31 1035 653915 654919 F 1005 97.01 1344 accept 0 ALIGNMENT 952 Y12-5b16.p1k chr15 1131 27 1029336 1030445 C 1105 96.29 1321 accept 0 ALIGNMENT 1022 Y12-5b16.q1k chr15 39 1172 1026209 1027350 F 1134 97.80 1304 accept 0 ALIGNMENT 924 Y12-5b18.q1k chr10 37 1072 432018 433057 F 1036 97.59 1254 accept 0 ALIGNMENT 939 Y12-5b18.p1k chr10 1239 21 436176 437397 C 1219 93.77 1318 accept 0 ALIGNMENT 53 Y12-5b20.q1k chr08 642 586 558621 558677 C 57 98.25 1231 reject_low 16 ALIGNMENT 0 Y12-5b20.q1k chr12 643 871 9544 9543 F 229 0.00 1231 reject_low 18 ALIGNMENT 0 Y12-5b20.q1k chr08 493 474 558724 558719 C 20 0.00 1231 reject_low 16 ALIGNMENT 52 Y12-5b20.q1k chr08 419 364 558743 558798 C 56 98.21 1231 reject_low 16 ALIGNMENT 0 Y12-5b20.q1k chr06 524 585 2974 2989 F 62 0.00 1231 reject_low 14 ALIGNMENT 0 Y12-5b20.q1k chr05 760 774 4559 4554 F 15 0.00 1231 ambiguous_tel 11 ALIGNMENT 24 Y12-5b20.q1k chr08 523 494 558694 558723 C 30 93.33 1231 reject_low 16 ALIGNMENT 0 Y12-5b20.q1k chr08 474 493 3643 3638 F 20 0.00 1231 reject_low 15 ALIGNMENT 24 Y12-5b20.q1k chr12 494 523 3907 3936 F 30 93.33 1231 reject_low 17,18 ALIGNMENT 24 Y12-5b20.q1k chr06 494 523 2944 2973 F 30 93.33 1231 reject_low 14 ALIGNMENT 941 Y12-5b20.q1k chr14 34 1144 3750 4871 F 1111 95.50 1231 ambiguous_tel 8 ALIGNMENT 979 Y12-5b20.q1k chr09 34 1144 4138 5260 F 1111 96.67 1231 ambiguous_tel 1 ALIGNMENT 658 Y12-5b20.q1k chr05 34 759 3814 4558 F 726 97.11 1231 ambiguous_tel 11 ALIGNMENT 0 Y12-5b20.q1k chr06 643 871 3046 3045 F 229 0.00 1231 reject_low 14 ALIGNMENT 950 Y12-5b20.q1k chr12 1144 34 1073392 1074513 C 1111 95.77 1231 ambiguous_tel 4 ALIGNMENT 0 Y12-5b20.q1k chr08 871 643 558622 558621 C 229 0.00 1231 reject_low 16 ALIGNMENT 0 Y12-5b20.q1k chr08 585 524 558678 558693 C 62 0.00 1231 reject_low 16 ALIGNMENT 52 Y12-5b20.q1k chr02 364 419 4033 4088 F 56 98.21 1231 reject_low 13 ALIGNMENT 0 Y12-5b20.q1k chr08 440 420 558753 558742 C 21 0.00 1231 reject_low 16 ALIGNMENT 0 Y12-5b20.q1k chr06 62 363 2869 2868 F 302 0.00 1231 reject_low 14 ALIGNMENT 950 Y12-5b20.q1k chr15 1144 34 1086356 1087477 C 1111 95.77 1231 ambiguous_tel 5 ALIGNMENT 0 Y12-5b20.q1k chr08 420 440 3620 3609 F 21 0.00 1231 reject_low 15 ALIGNMENT 162 Y12-5b20.q1k chr05 866 1144 4586 4875 F 279 87.81 1231 ambiguous_tel 11 ALIGNMENT 29 Y12-5b20.q1k chr16 473 441 944267 944299 C 33 96.97 1231 reject_low 19 ALIGNMENT 950 Y12-5b20.q1k chr04 1144 34 1527191 1528312 C 1111 95.77 1231 ambiguous_tel 3 ALIGNMENT 0 Y12-5b20.q1k chr12 865 810 1067098 1067093 C 56 0.00 1231 ambiguous_tel 10 ALIGNMENT 710 Y12-5b20.q1k chr12 759 34 1067125 1067850 C 726 99.45 1231 ambiguous_tel 10 ALIGNMENT 0 Y12-5b20.q1k chr08 363 62 558799 558798 C 302 0.00 1231 reject_low 16 ALIGNMENT 0 Y12-5b20.q1k chr02 643 871 4210 4209 F 229 0.00 1231 reject_low 13 ALIGNMENT 29 Y12-5b20.q1k chr12 441 473 3878 3910 F 33 96.97 1231 reject_low 17,18 ALIGNMENT 24 Y12-5b20.q1k chr08 494 523 3639 3668 F 30 93.33 1231 reject_low 15 ALIGNMENT 24 Y12-5b20.q1k chr02 494 523 4108 4137 F 30 93.33 1231 reject_low 13 ALIGNMENT 52 Y12-5b20.q1k chr08 364 419 3564 3619 F 56 98.21 1231 reject_low 15 ALIGNMENT 24 Y12-5b20.q1k chr13 494 523 3783 3812 F 30 93.33 1231 reject_low 20 ALIGNMENT 53 Y12-5b20.q1k chr02 586 642 4154 4210 F 57 98.25 1231 reject_low 13 ALIGNMENT 0 Y12-5b20.q1k chr08 62 363 3564 3563 F 302 0.00 1231 reject_low 15 ALIGNMENT 29 Y12-5b20.q1k chr08 473 441 558720 558752 C 33 96.97 1231 reject_low 16 ALIGNMENT 52 Y12-5b20.q1k chr12 364 419 3832 3887 F 56 98.21 1231 reject_low 17,18 ALIGNMENT 53 Y12-5b20.q1k chr16 642 586 944168 944224 C 57 98.25 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr16 493 474 944271 944266 C 20 0.00 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr16 871 643 944169 944168 C 229 0.00 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr12 524 585 3937 9487 F 62 0.00 1231 reject_low 18 ALIGNMENT 29 Y12-5b20.q1k chr08 441 473 3610 3642 F 33 96.97 1231 reject_low 15 ALIGNMENT 53 Y12-5b20.q1k chr12 586 642 3953 4009 F 57 98.25 1231 reject_low 17 ALIGNMENT 889 Y12-5b20.p1k chr03 1185 15 2277 3441 C 1171 92.91 1283 ambiguous_trans 0 ALIGNMENT 0 Y12-5b20.q1k chr06 420 440 2925 2914 F 21 0.00 1231 reject_low 14 ALIGNMENT 0 Y12-5b20.q1k chr16 363 62 944346 944345 C 302 0.00 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr12 474 493 9446 9441 F 20 0.00 1231 reject_low 12 ALIGNMENT 979 Y12-5b20.q1k chr10 34 1144 4121 5243 F 1111 96.67 1231 ambiguous_tel 2 ALIGNMENT 0 Y12-5b20.q1k chr02 524 585 4138 4153 F 62 0.00 1231 reject_low 13 ALIGNMENT 53 Y12-5b20.q1k chr06 586 642 2990 3046 F 57 98.25 1231 reject_low 14 ALIGNMENT 0 Y12-5b20.q1k chr02 474 493 4112 4107 F 20 0.00 1231 reject_low 13 ALIGNMENT 0 Y12-5b20.q1k chr12 524 585 3937 3952 F 62 0.00 1231 reject_low 17 ALIGNMENT 0 Y12-5b20.q1k chr12 62 363 9367 9366 F 302 0.00 1231 reject_low 12 ALIGNMENT 0 Y12-5b20.q1k chr13 62 363 3708 3707 F 302 0.00 1231 reject_low 20 ALIGNMENT 941 Y12-5b20.q1k chr05 1144 34 572020 573141 C 1111 95.50 1231 ambiguous_tel 6 ALIGNMENT 0 Y12-5b20.q1k chr08 524 585 3669 3684 F 62 0.00 1231 reject_low 15 ALIGNMENT 52 Y12-5b20.q1k chr06 364 419 2869 2924 F 56 98.21 1231 reject_low 14 ALIGNMENT 29 Y12-5b20.q1k chr12 441 473 9413 9445 F 33 96.97 1231 reject_low 12 ALIGNMENT 49 Y12-5b20.q1k chr13 364 419 3708 3763 F 56 96.43 1231 reject_low 20 ALIGNMENT 0 Y12-5b20.q1k chr13 420 440 3764 3753 F 21 0.00 1231 reject_low 20 ALIGNMENT 0 Y12-5b20.q1k chr13 643 871 3885 3884 F 229 0.00 1231 reject_low 20 ALIGNMENT 0 Y12-5b20.q1k chr13 524 585 3813 3828 F 62 0.00 1231 reject_low 20 ALIGNMENT 29 Y12-5b20.q1k chr02 441 473 4079 4111 F 33 96.97 1231 reject_low 13 ALIGNMENT 29 Y12-5b20.q1k chr12 809 775 1067094 1067128 C 35 94.29 1231 ambiguous_tel 10 ALIGNMENT 24 Y12-5b20.q1k chr12 494 523 9442 9471 F 30 93.33 1231 reject_low 12 ALIGNMENT 29 Y12-5b20.q1k chr13 441 473 3754 3786 F 33 96.97 1231 reject_low 20 ALIGNMENT 53 Y12-5b20.q1k chr13 586 642 3829 3885 F 57 98.25 1231 reject_low 20 ALIGNMENT 52 Y12-5b20.q1k chr16 419 364 944290 944345 C 56 98.21 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr12 420 440 3888 3877 F 21 0.00 1231 reject_low 17,18 ALIGNMENT 0 Y12-5b20.q1k chr02 62 363 4033 4032 F 302 0.00 1231 reject_low 13 ALIGNMENT 29 Y12-5b20.q1k chr05 775 809 4555 4589 F 35 94.29 1231 ambiguous_tel 11 ALIGNMENT 0 Y12-5b20.q1k chr12 774 760 1067129 1067124 C 15 0.00 1231 ambiguous_tel 10 ALIGNMENT 0 Y12-5b20.q1k chr05 810 865 4590 4585 F 56 0.00 1231 ambiguous_tel 11 ALIGNMENT 941 Y12-5b20.q1k chr16 34 1144 3659 4780 F 1111 95.50 1231 ambiguous_tel 9 ALIGNMENT 0 Y12-5b20.q1k chr16 585 524 944225 944240 C 62 0.00 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr12 524 871 9471 9470 F 348 0.00 1231 reject_low 12 ALIGNMENT 0 Y12-5b20.q1k chr06 474 493 2948 2943 F 20 0.00 1231 reject_low 14 ALIGNMENT 941 Y12-5b20.q1k chr07 1144 34 1086097 1087218 C 1111 95.50 1231 ambiguous_tel 7 ALIGNMENT 52 Y12-5b20.q1k chr12 364 419 9367 9422 F 56 98.21 1231 reject_low 12 ALIGNMENT 53 Y12-5b20.q1k chr12 586 642 9488 9544 F 57 98.25 1231 reject_low 18 ALIGNMENT 0 Y12-5b20.q1k chr12 62 363 3832 3831 F 302 0.00 1231 reject_low 17,18 ALIGNMENT 0 Y12-5b20.q1k chr16 440 420 944300 944289 C 21 0.00 1231 reject_low 19 ALIGNMENT 53 Y12-5b20.q1k chr08 586 642 3685 3741 F 57 98.25 1231 reject_low 15 ALIGNMENT 0 Y12-5b20.q1k chr12 643 871 4009 4008 F 229 0.00 1231 reject_low 17 ALIGNMENT 0 Y12-5b20.q1k chr12 474 493 3911 3906 F 20 0.00 1231 reject_low 17,18 ALIGNMENT 162 Y12-5b20.q1k chr12 1144 866 1066808 1067097 C 279 87.81 1231 ambiguous_tel 10 ALIGNMENT 0 Y12-5b20.q1k chr02 420 440 4089 4078 F 21 0.00 1231 reject_low 13 ALIGNMENT 0 Y12-5b20.q1k chr13 474 493 3787 3782 F 20 0.00 1231 reject_low 20 ALIGNMENT 29 Y12-5b20.q1k chr06 441 473 2915 2947 F 33 96.97 1231 reject_low 14 ALIGNMENT 24 Y12-5b20.q1k chr16 523 494 944241 944270 C 30 93.33 1231 reject_low 19 ALIGNMENT 0 Y12-5b20.q1k chr08 643 871 3741 3740 F 229 0.00 1231 reject_low 15 ALIGNMENT 0 Y12-5b20.q1k chr12 420 440 9423 9412 F 21 0.00 1231 reject_low 12 ALIGNMENT 932 Y12-5b21.q1k chr08 1171 36 326518 327660 C 1136 94.89 1329 accept 0 ALIGNMENT 837 Y12-5b21.p1k chr08 45 1044 321728 322749 F 1000 96.20 1172 accept 0 ALIGNMENT 984 Y12-5b22.q1k chr11 38 1153 649855 650984 F 1116 97.22 1313 accept 0 ALIGNMENT 796 Y12-5b22.p1k chr11 1006 25 654268 655257 C 982 93.89 1153 accept 0 ALIGNMENT 972 Y12-5b23.q1k chr05 38 1159 560227 561348 F 1122 96.35 1165 accept 0 ALIGNMENT 980 Y12-5b24.p1k chr04 26 1128 1415205 1416306 F 1103 96.83 1268 accept 0 ALIGNMENT 1028 Y12-5b24.q1k chr04 1157 36 1418838 1419962 C 1122 97.42 1158 accept 0 ALIGNMENT 0 Y12-5c01.q1k chr05 737 932 175788 175787 F 196 0.00 1230 reject_low 4 ALIGNMENT 590 Y12-5c01.q1k chr05 498 1228 175622 176353 F 731 93.98 1230 accept 0 ALIGNMENT 24 Y12-5c01.q1k chr02 551 518 372271 372304 C 34 94.12 1230 reject_low 10 ALIGNMENT 149 Y12-5c01.q1k chr05 498 715 175658 175875 F 218 90.83 1230 reject_low 3 ALIGNMENT 0 Y12-5c01.q1k chr05 665 932 175860 175859 F 268 0.00 1230 reject_low 5 ALIGNMENT 945 Y12-5c01.p1k chr05 1165 21 179075 180230 C 1145 95.90 1246 accept 0 ALIGNMENT 0 Y12-5c01.q1k chr05 62 534 175587 175586 F 473 0.00 1230 reject_low 4 ALIGNMENT 68 Y12-5c01.q1k chr05 499 628 175731 175860 F 130 86.15 1230 reject_low 7 ALIGNMENT 0 Y12-5c01.q1k chr05 737 932 175716 175715 F 196 0.00 1230 reject_low 8 ALIGNMENT 36 Y12-5c01.q1k chr05 499 592 175767 175860 F 94 81.91 1230 reject_low 9 ALIGNMENT 0 Y12-5c01.q1k chr05 629 932 175860 175859 F 304 0.00 1230 reject_low 7 ALIGNMENT 0 Y12-5c01.q1k chr05 62 497 175658 175657 F 436 0.00 1230 reject_low 3 ALIGNMENT 0 Y12-5c01.q1k chr05 737 932 175752 175751 F 196 0.00 1230 reject_low 6 ALIGNMENT 0 Y12-5c01.q1k chr15 932 452 346658 346657 C 481 0.00 1230 reject_low 2 ALIGNMENT 0 Y12-5c01.q1k chr05 62 498 175695 175694 F 437 0.00 1230 reject_low 5 ALIGNMENT 86 Y12-5c01.q1k chr05 570 736 175586 175752 F 167 85.03 1230 reject_low 6 ALIGNMENT 0 Y12-5c01.q1k chr05 742 932 175829 175828 F 191 0.00 1230 reject_low 1 ALIGNMENT 0 Y12-5c01.q1k chr05 716 932 175875 175874 F 217 0.00 1230 reject_low 3 ALIGNMENT 0 Y12-5c01.q1k chr05 62 498 175767 175766 F 437 0.00 1230 reject_low 9 ALIGNMENT 0 Y12-5c01.q1k chr05 62 498 175731 175730 F 437 0.00 1230 reject_low 7 ALIGNMENT 0 Y12-5c01.q1k chr05 62 497 175622 175621 F 436 0.00 1230 accept 0 ALIGNMENT 0 Y12-5c01.q1k chr02 517 62 372305 372304 C 456 0.00 1230 reject_low 10 ALIGNMENT 120 Y12-5c01.q1k chr05 535 736 175587 175788 F 202 87.62 1230 reject_low 4 ALIGNMENT 0 Y12-5c01.q1k chr05 62 605 175586 175585 F 544 0.00 1230 reject_low 8 ALIGNMENT 106 Y12-5c01.q1k chr05 499 664 175695 175860 F 166 89.76 1230 reject_low 5 ALIGNMENT 0 Y12-5c01.q1k chr15 154 62 346954 346953 C 93 0.00 1230 reject_low 2 ALIGNMENT 0 Y12-5c01.q1k chr05 62 569 175586 175585 F 508 0.00 1230 reject_low 6 ALIGNMENT 0 Y12-5c01.q1k chr02 932 552 372272 372271 C 381 0.00 1230 reject_low 10 ALIGNMENT 0 Y12-5c01.q1k chr05 593 932 175860 175859 F 340 0.00 1230 reject_low 9 ALIGNMENT 581 Y12-5c01.q1k chr05 39 741 175127 175829 F 703 94.74 1230 reject_low 1 ALIGNMENT 54 Y12-5c01.q1k chr05 606 736 175586 175716 F 131 81.68 1230 reject_low 8 ALIGNMENT 195 Y12-5c01.q1k chr15 451 155 346657 346953 C 297 88.89 1230 reject_low 2 ALIGNMENT 918 Y12-5c02.q1k chr12 28 1092 154913 155966 F 1065 97.00 1302 accept 0 ALIGNMENT 906 Y12-5c02.p1k chr12 1203 52 158397 159556 C 1152 93.58 1330 accept 0 ALIGNMENT 963 Y12-5c04.q1k chr12 1173 34 782263 783401 C 1140 95.70 1272 accept 0 ALIGNMENT 653 Y12-5c04.p1k chr12 22 778 778688 779438 F 757 96.43 1328 accept 0 ALIGNMENT 30 Y12-5c05.p1k chr04 850 692 992479 992637 C 159 78.62 1280 reject_low 12 ALIGNMENT 29 Y12-5c05.p1k chr03 693 850 90437 90594 F 158 78.48 1280 reject_low 18 ALIGNMENT 29 Y12-5c05.p1k chr05 124 188 448986 449050 F 65 86.15 1280 reject_low 5 ALIGNMENT 20 Y12-5c05.p1k chr05 171 140 443028 443059 C 32 90.62 1280 reject_low 30 ALIGNMENT 0 Y12-5c05.p1k chr07 775 383 876010 876009 C 393 0.00 1280 reject_low 29 ALIGNMENT 61 Y12-5c05.p1k chr05 693 840 138221 138367 F 148 83.78 1280 reject_low 4 ALIGNMENT 20 Y12-5c05.p1k chr12 292 328 592896 592932 F 37 86.49 1280 reject_low 32 ALIGNMENT 0 Y12-5c05.p1k chr05 291 172 442889 443027 C 120 0.00 1280 reject_low 30 ALIGNMENT 27 Y12-5c05.p1k chr05 382 292 442800 442888 C 91 80.22 1280 reject_low 30 ALIGNMENT 0 Y12-5c05.p1k chr05 189 775 449050 449049 F 587 0.00 1280 reject_low 5 ALIGNMENT 0 Y12-5c05.p1k chr04 775 760 513520 513519 C 16 0.00 1280 reject_low 26 ALIGNMENT 0 Y12-5c05.p1k chr05 302 62 62554 62553 C 241 0.00 1280 reject_low 8 ALIGNMENT 30 Y12-5c05.p1k chr04 688 850 1352629 1352791 F 163 78.53 1280 reject_low 9 ALIGNMENT 0 Y12-5c05.p1k chr10 775 383 540732 540731 C 393 0.00 1280 reject_low 28 ALIGNMENT 0 Y12-5c05.p1k chr12 62 139 592730 592729 F 78 0.00 1280 reject_low 32 ALIGNMENT 0 Y12-5c05.p1k chr12 179 291 592769 592895 F 113 0.00 1280 reject_low 32 ALIGNMENT 0 Y12-5c05.p1k chr04 691 62 992638 992637 C 630 0.00 1280 reject_low 12 ALIGNMENT 30 Y12-5c05.p1k chr12 692 850 941188 941346 F 159 78.62 1280 reject_low 13 ALIGNMENT 0 Y12-5c05.p1k chr04 692 62 514017 514016 C 631 0.00 1280 reject_low 19 ALIGNMENT 0 Y12-5c05.p1k chr03 62 692 84294 84293 F 631 0.00 1280 reject_low 16 ALIGNMENT 0 Y12-5c05.p1k chr07 281 189 876109 876212 C 93 0.00 1280 reject_low 29 ALIGNMENT 0 Y12-5c05.p1k chr04 691 62 513588 513587 C 630 0.00 1280 reject_low 26 ALIGNMENT 0 Y12-5c05.p1k chr04 62 742 992651 992650 F 681 0.00 1280 reject_low 23 ALIGNMENT 29 Y12-5c05.p1k chr04 850 693 645673 645830 C 158 78.48 1280 reject_low 20 ALIGNMENT 0 Y12-5c05.p1k chr12 62 691 941188 941187 F 630 0.00 1280 reject_low 13 ALIGNMENT 0 Y12-5c05.p1k chr05 62 692 487829 487828 F 631 0.00 1280 reject_low 21 ALIGNMENT 22 Y12-5c05.p1k chr07 188 124 876213 876278 C 65 83.08 1280 reject_low 29 ALIGNMENT 0 Y12-5c05.p1k chr05 692 62 443730 443729 C 631 0.00 1280 reject_low 14 ALIGNMENT 479 Y12-5c05.p1k chr12 588 20 599065 599634 C 569 97.01 1280|2,0 accept_trans 0 ALIGNMENT 29 Y12-5c05.p1k chr03 693 850 84294 84451 F 158 78.48 1280 reject_low 16 ALIGNMENT 0 Y12-5c05.p1k chr05 716 775 443388 443387 F 60 0.00 1280 reject_low 27 ALIGNMENT 0 Y12-5c05.p1k chr05 692 62 449317 449316 C 631 0.00 1280 reject_low 15 ALIGNMENT 35 Y12-5c05.p1k chr05 124 188 443399 443463 F 65 87.69 1280 reject_low 1 ALIGNMENT 0 Y12-5c05.p1k chr07 123 62 876279 876278 C 62 0.00 1280 reject_low 29 ALIGNMENT 0 Y12-5c05.p1k chr12 329 692 592933 593146 F 364 0.00 1280 reject_low 32 ALIGNMENT 23 Y12-5c05.p1k chr11 140 182 313269 313311 F 43 88.37 1280 reject_low 31 ALIGNMENT 28 Y12-5c05.p1k chr04 759 692 513519 513587 C 68 82.35 1280 reject_low 26 ALIGNMENT 0 Y12-5c05.p1k chr03 62 690 84066 84065 F 629 0.00 1280 reject_low 24 ALIGNMENT 29 Y12-5c05.p1k chr12 693 850 593147 593304 F 158 76.58 1280 reject_low 32 ALIGNMENT 0 Y12-5c05.p1k chr12 775 189 598995 598994 C 587 0.00 1280 reject_low 6 ALIGNMENT 28 Y12-5c05.p1k chr05 855 693 443568 443729 C 163 77.30 1280 reject_low 14 ALIGNMENT 47 Y12-5c05.p1k chr10 693 862 540680 540848 F 170 79.41 1280 reject_low 7 ALIGNMENT 0 Y12-5c05.p1k chr04 688 62 651419 651418 C 627 0.00 1280 reject_low 11 ALIGNMENT 0 Y12-5c05.p1k chr11 384 691 313529 313836 F 308 0.00 1280 reject_low 31 ALIGNMENT 0 Y12-5c05.p1k chr12 586 587 593144 599066 C 0 0.00 1280 accept_trans 0 ALIGNMENT 22 Y12-5c05.p1k chr12 140 178 592730 592768 F 39 89.74 1280 reject_low 32 ALIGNMENT 28 Y12-5c05.p1k chr03 691 850 84066 84225 F 160 78.12 1280 reject_low 24 ALIGNMENT 37 Y12-5c05.p1k chr11 248 383 313388 313528 F 136 80.15 1280 reject_low 31 ALIGNMENT 0 Y12-5c05.p1k chr11 62 139 313269 313268 F 78 0.00 1280 reject_low 31 ALIGNMENT 21 Y12-5c05.p1k chr11 692 850 313837 313995 F 159 76.73 1280 reject_low 31 ALIGNMENT 0 Y12-5c05.p1k chr05 62 123 448986 448985 F 62 0.00 1280 reject_low 5 ALIGNMENT 0 Y12-5c05.p1k chr05 62 123 443399 443398 F 62 0.00 1280 reject_low 1 ALIGNMENT 24 Y12-5c05.p1k chr10 178 127 540950 541001 C 52 88.46 1280 reject_low 28 ALIGNMENT 0 Y12-5c05.p1k chr05 775 383 138273 138272 C 393 0.00 1280 reject_low 3 ALIGNMENT 29 Y12-5c05.p1k chr05 693 850 487829 487986 F 158 78.48 1280 reject_low 21 ALIGNMENT 0 Y12-5c05.p1k chr11 183 247 313312 313387 F 65 0.00 1280 reject_low 31 ALIGNMENT 59 Y12-5c05.p1k chr07 862 692 823142 823312 C 171 81.29 1280 reject_low 2 ALIGNMENT 0 Y12-5c05.p1k chr05 189 775 443463 443462 F 587 0.00 1280 reject_low 1 ALIGNMENT 0 Y12-5c05.p1k chr04 692 62 645831 645830 C 631 0.00 1280 reject_low 20 ALIGNMENT 254 Y12-5c05.p1k chr12 956 584 592776 593146 C 373 91.15 1280|0,3 accept_trans 0 ALIGNMENT 0 Y12-5c05.p1k chr03 62 692 90437 90436 F 631 0.00 1280 reject_low 18 ALIGNMENT 29 Y12-5c05.p1k chr08 850 693 91938 92095 C 158 78.48 1280 reject_low 22 ALIGNMENT 0 Y12-5c05.p1k chr05 62 692 443366 443365 F 631 0.00 1280 reject_low 27 ALIGNMENT 0 Y12-5c05.p1k chr10 62 692 540680 540679 F 631 0.00 1280 reject_low 7 ALIGNMENT 29 Y12-5c05.p1k chr04 850 693 513859 514016 C 158 78.48 1280 reject_low 19 ALIGNMENT 0 Y12-5c05.p1k chr10 126 62 541002 541001 C 65 0.00 1280 reject_low 28 ALIGNMENT 0 Y12-5c05.p1k chr05 775 383 442801 442800 C 393 0.00 1280 reject_low 30 ALIGNMENT 0 Y12-5c05.p1k chr05 62 692 138221 138220 F 631 0.00 1280 reject_low 4 ALIGNMENT 29 Y12-5c05.p1k chr12 188 124 598994 599058 C 65 86.15 1280 reject_low 6 ALIGNMENT 20 Y12-5c05.p1k chr07 382 282 876009 876108 C 101 76.24 1280 reject_low 29 ALIGNMENT 0 Y12-5c05.p1k chr05 775 338 62520 62519 C 438 0.00 1280 reject_low 8 ALIGNMENT 0 Y12-5c05.p1k chr03 62 692 84810 84809 F 631 0.00 1280 reject_low 17 ALIGNMENT 0 Y12-5c05.p1k chr07 691 62 823313 823312 C 630 0.00 1280 reject_low 2 ALIGNMENT 28 Y12-5c05.p1k chr05 855 693 449155 449316 C 163 77.30 1280 reject_low 15 ALIGNMENT 0 Y12-5c05.p1k chr04 62 687 1352629 1352628 F 626 0.00 1280 reject_low 9 ALIGNMENT 0 Y12-5c05.p1k chr08 692 62 92096 92095 C 631 0.00 1280 reject_low 22 ALIGNMENT 0 Y12-5c05.p1k chr10 291 179 540821 540949 C 113 0.00 1280 reject_low 28 ALIGNMENT 0 Y12-5c05.p1k chr05 139 62 443060 443059 C 78 0.00 1280 reject_low 30 ALIGNMENT 33 Y12-5c05.p1k chr07 743 841 876009 876105 F 99 82.83 1280 reject_low 10 ALIGNMENT 29 Y12-5c05.p1k chr04 850 689 651257 651418 C 162 78.40 1280 reject_low 11 ALIGNMENT 27 Y12-5c05.p1k chr05 382 292 138272 138361 C 91 79.12 1280 reject_low 3 ALIGNMENT 21 Y12-5c05.p1k chr05 337 303 62519 62553 C 35 88.57 1280 reject_low 8 ALIGNMENT 0 Y12-5c05.p1k chr05 62 690 62140 62139 F 629 0.00 1280 reject_low 25 ALIGNMENT 0 Y12-5c05.p1k chr12 123 62 599059 599058 C 62 0.00 1280 reject_low 6 ALIGNMENT 28 Y12-5c05.p1k chr05 691 850 62140 62299 F 160 78.12 1280 reject_low 25 ALIGNMENT 36 Y12-5c05.p1k chr10 382 292 540731 540820 C 91 82.42 1280 reject_low 28 ALIGNMENT 834 Y12-5c05.q1k chr12 33 1121 588777 589856 F 1089 94.40 1281 accept_trans 0 ALIGNMENT 0 Y12-5c05.p1k chr07 62 742 876009 876008 F 681 0.00 1280 reject_low 10 ALIGNMENT 21 Y12-5c05.p1k chr05 693 715 443366 443388 F 23 100.00 1280 reject_low 27 ALIGNMENT 29 Y12-5c05.p1k chr03 693 850 84810 84967 F 158 78.48 1280 reject_low 17 ALIGNMENT 0 Y12-5c05.p1k chr05 291 62 138362 138361 C 230 0.00 1280 reject_low 3 ALIGNMENT 30 Y12-5c05.p1k chr04 743 828 992651 992735 F 86 81.40 1280 reject_low 23 ALIGNMENT 772 Y12-5c06.q1k chr14 1018 28 457928 458917 C 991 94.25 1292 accept 0 ALIGNMENT 426 Y12-5c06.p1k chr14 62 728 453893 454551 F 667 90.25 1481 accept 0 ALIGNMENT 1054 Y12-5c07.p1k chr12 20 1266 764812 766063 F 1247 95.51 1337 accept 0 ALIGNMENT 950 Y12-5c07.q1k chr12 1234 37 767586 768769 C 1198 95.16 1235 accept 0 ALIGNMENT 866 Y12-5c08.p1k chr04 1057 14 1457305 1458362 C 1044 95.69 1334 accept 0 ALIGNMENT 20 Y12-5c08.q1k chr12 825 790 515780 515815 C 36 86.11 1225 reject_low 1 ALIGNMENT 386 Y12-5c08.q1k chr04 30 998 1453146 1454105 F 969 81.32 1225 accept 0 ALIGNMENT 105 Y12-5c08.q1k chr12 701 356 515904 516246 C 346 77.75 1225 reject_low 1 ALIGNMENT 0 Y12-5c08.q1k chr12 789 702 515816 515903 C 88 0.00 1225 reject_low 1 ALIGNMENT 69 Y12-5c10.q1k chrm 282 92 68504 68701 C 191 83.25 450 reject_low 1 ALIGNMENT 0 Y12-5c10.q1k chrm 91 62 68702 68701 C 30 0.00 450 reject_low 1 ALIGNMENT 28 Y12-5c10.q1k chrm 50 134 44998 45085 F 85 83.53 450 reject_low 2 ALIGNMENT 143 Y12-5c10.p1k chrm 234 20 34331 34539 C 215 94.88 1587 accept 0 ALIGNMENT 0 Y12-5c10.q1k chrm 177 450 85664 85663 F 274 0.00 450 reject_low 5 ALIGNMENT 0 Y12-5c10.q1k chrm 114 62 84250 84249 C 53 0.00 450 reject_low 4 ALIGNMENT 0 Y12-5c10.q1k chrm 127 128 2606 4159 C 0 0.00 450 reject_low 7 ALIGNMENT 0 Y12-5c10.q1k chrm 186 450 44250 44249 F 265 0.00 450 reject_low 6 ALIGNMENT 29 Y12-5c10.q1k chrm 106 176 85597 85664 F 71 87.32 450 reject_low 5 ALIGNMENT 32 Y12-5c10.q1k chrm 176 115 84193 84249 C 62 90.32 450 reject_low 4 ALIGNMENT 160 Y12-5c10.q1k chrm 223 449 34329 34548 F 227 96.04 450 accept 0 ALIGNMENT 0 Y12-5c10.q1k chrm 450 283 68505 68504 C 168 0.00 450 reject_low 1 ALIGNMENT 0 Y12-5c10.q1k chrm 450 177 2553 2552 C 274 0.00 450 reject_low 7 ALIGNMENT 24 Y12-5c10.q1k chrm 158 185 44223 44250 F 28 100.00 450 reject_low 6 ALIGNMENT 0 Y12-5c10.q1k chrm 222 222 34288 34328 F 1 0.00 450 accept 0 ALIGNMENT 38 Y12-5c10.q1k chrm 176 120 2552 2613 C 57 91.23 450|0,8 reject_low 7 ALIGNMENT 23 Y12-5c10.q1k chrm 127 246 55496 55606 F 120 81.67 450 reject_low 3 ALIGNMENT 0 Y12-5c10.q1k chrm 135 450 45085 45084 F 316 0.00 450 reject_low 2 ALIGNMENT 0 Y12-5c10.q1k chrm 62 157 44223 44222 F 96 0.00 450 reject_low 6 ALIGNMENT 0 Y12-5c10.q1k chrm 450 177 84194 84193 C 274 0.00 450 reject_low 4 ALIGNMENT 35 Y12-5c10.q1k chrm 134 63 4153 4227 C 72 86.11 450|7,0 reject_low 7 ALIGNMENT 171 Y12-5c10.q1k chrm 37 221 34103 34287 F 185 100.00 450 accept 0 ALIGNMENT 0 Y12-5c10.q1k chrm 62 126 55496 55495 F 65 0.00 450 reject_low 3 ALIGNMENT 0 Y12-5c10.q1k chrm 62 105 85597 85596 F 44 0.00 450 reject_low 5 ALIGNMENT 0 Y12-5c10.q1k chrm 247 450 55606 55605 F 204 0.00 450 reject_low 3 ALIGNMENT 542 Y12-5c11.q1k chr14 864 37 426187 427005 C 828 89.86 1308 accept 0 ALIGNMENT 747 Y12-5c11.p1k chr14 16 904 422813 423702 F 889 95.84 1320 accept 0 ALIGNMENT 131 Y12-5c11.q1k chr15 477 816 523208 523546 F 340 80.29 1308 reject_low 1 ALIGNMENT 0 Y12-5c12.q1k chr16 865 502 452460 452459 C 364 0.00 1325 reject_low 1 ALIGNMENT 1069 Y12-5c12.q1k chr02 37 1284 561781 563041 F 1248 96.71 1325 accept 0 ALIGNMENT 79 Y12-5c12.q1k chr16 501 59 452459 452901 C 443 73.14 1325 reject_low 1 ALIGNMENT 1077 Y12-5c12.p1k chr02 1228 18 565548 566763 C 1211 97.44 1363 accept 0 ALIGNMENT 697 Y12-5c14.q1k chr09 13 1111 42669 43756 F 1099 90.63 1255 accept 0 ALIGNMENT 704 Y12-5c15.q1k chr09 844 38 28622 29424 C 807 97.15 1332 reject_bad_break 0 ALIGNMENT 28 Y12-5c15.p1k chr09 893 950 27558 27614 F 58 84.48 1274 reject_bad_break 0 ALIGNMENT 0 Y12-5c15.p1k chr09 855 892 27532 27557 F 38 0.00 1274 reject_bad_break 0 ALIGNMENT 345 Y12-5c15.p1k chr09 30 854 26710 27531 F 825 81.70 1274 reject_bad_break 0 ALIGNMENT 1039 Y12-5c16.q1k chr15 1228 32 173252 174456 C 1197 96.66 1258 accept 0 ALIGNMENT 1040 Y12-5c16.p1k chr15 18 1219 169913 171107 F 1202 96.76 1335 accept 0 ALIGNMENT 779 Y12-5c17.q1k chr15 48 994 121327 122272 F 947 95.46 1265 ambiguous_trans 23 ALIGNMENT 801 Y12-5c17.q1k chr15 48 1048 598440 599442 F 1001 94.61 1265 ambiguous_trans 16 ALIGNMENT 779 Y12-5c17.q1k chr13 48 994 199956 200901 F 947 95.46 1265 ambiguous_trans 22 ALIGNMENT 862 Y12-5c17.q1k chr02 36 1048 263186 264200 F 1013 96.25 1265 ambiguous_trans 11 ALIGNMENT 849 Y12-5c17.q1k chr14 36 1042 522755 523761 F 1007 95.93 1265 ambiguous_trans 12 ALIGNMENT 955 Y12-5c17.p1k chr07 1154 29 709448 710575 C 1126 96.09 1213 ambiguous_trans 0 ALIGNMENT 834 Y12-5c17.q1k chr04 48 1102 1210315 1211376 F 1055 94.41 1265 ambiguous_trans 8 ALIGNMENT 774 Y12-5c17.q1k chr16 48 1042 848036 849030 F 995 93.77 1265 ambiguous_trans 25 ALIGNMENT 777 Y12-5c17.q1k chr13 1042 48 374002 374996 C 995 93.87 1265 ambiguous_trans 19 ALIGNMENT 774 Y12-5c17.q1k chr13 48 1042 187789 188783 F 995 93.77 1265 ambiguous_trans 24 ALIGNMENT 834 Y12-5c17.q1k chr12 48 1102 654449 655510 F 1055 94.41 1265 ambiguous_trans 9 ALIGNMENT 903 Y12-5c17.q1k chr14 1138 36 97802 98916 C 1103 95.47 1265 ambiguous_trans 4 ALIGNMENT 943 Y12-5c17.p1k chr09 1154 29 207544 208671 C 1126 95.74 1213 ambiguous_trans 1 ALIGNMENT 834 Y12-5c17.q1k chr04 1102 48 987954 989015 C 1055 94.41 1265 ambiguous_trans 7 ALIGNMENT 738 Y12-5c17.q1k chr16 1042 48 805943 806937 C 995 92.56 1265 ambiguous_trans 27 ALIGNMENT 933 Y12-5c17.q1k chr13 1138 36 358196 359310 C 1103 96.37 1265 ambiguous_trans 3 ALIGNMENT 846 Y12-5c17.q1k chr08 1042 36 544910 545916 C 1007 95.83 1265 ambiguous_trans 14 ALIGNMENT 865 Y12-5c17.q1k chr07 1048 36 818690 819704 C 1013 96.35 1265 ambiguous_trans 10 ALIGNMENT 843 Y12-5c17.q1k chr07 48 1138 539389 540491 F 1091 93.86 1265 ambiguous_trans 5 ALIGNMENT 840 Y12-5c17.q1k chr10 48 1138 481586 482688 F 1091 93.77 1265 ambiguous_trans 6 ALIGNMENT 750 Y12-5c17.q1k chr10 48 1042 476002 476996 F 995 92.96 1265 ambiguous_trans 26 ALIGNMENT 782 Y12-5c17.q1k chr16 48 994 60076 61021 F 947 95.56 1265 ambiguous_trans 18 ALIGNMENT 777 Y12-5c17.q1k chr16 1042 48 851931 852925 C 995 93.87 1265 ambiguous_trans 20 ALIGNMENT 933 Y12-5c17.q1k chr02 36 1138 224649 225763 F 1103 96.28 1265 ambiguous_trans 2 ALIGNMENT 779 Y12-5c17.q1k chr05 994 48 444747 445692 C 947 95.46 1265 ambiguous_trans 21 ALIGNMENT 782 Y12-5c17.q1k chr12 994 48 477329 478274 C 947 95.56 1265 ambiguous_trans 17 ALIGNMENT 846 Y12-5c17.q1k chr05 1042 36 493797 494803 C 1007 95.83 1265 ambiguous_trans 13 ALIGNMENT 837 Y12-5c17.q1k chr12 1042 36 216387 217393 C 1007 95.53 1265 ambiguous_trans_ua 15 ALIGNMENT 1010 Y12-5c19.q1k chr04 1235 34 1404550 1405753 C 1202 96.51 1241 accept 0 ALIGNMENT 974 Y12-5c19.p1k chr04 26 1207 1400472 1401646 F 1182 95.35 1234 accept 0 ALIGNMENT 0 Y12-5c21.q1k chr14 834 281 282778 282777 C 554 0.00 1220 reject_low 6 ALIGNMENT 0 Y12-5c21.q1k chr14 834 281 282658 282657 C 554 0.00 1220 reject_low 2 ALIGNMENT 0 Y12-5c21.q1k chr14 834 281 282838 282837 C 554 0.00 1220 reject_low 8 ALIGNMENT 179 Y12-5c21.q1k chr14 280 32 282597 282845 C 249 92.37 1220 reject_low 1 ALIGNMENT 49 Y12-5c21.q1k chr14 100 32 282537 282605 C 69 92.75 1220 reject_low 7 ALIGNMENT 65 Y12-5c21.q1k chr14 280 191 282777 282866 C 90 92.22 1220 reject_low 6 ALIGNMENT 0 Y12-5c21.q1k chr14 190 62 282867 282866 C 129 0.00 1220 reject_low 6 ALIGNMENT 899 Y12-5c21.q1k chr14 1087 32 281742 282785 C 1056 96.78 1220 accept 0 ALIGNMENT 125 Y12-5c21.q1k chr14 280 135 282717 282862 C 146 96.58 1220 reject_low 4 ALIGNMENT 95 Y12-5c21.q1k chr14 160 32 282537 282665 C 129 93.02 1220 reject_low 5 ALIGNMENT 0 Y12-5c21.q1k chr14 834 221 282538 282537 C 614 0.00 1220 reject_low 3 ALIGNMENT 25 Y12-5c21.q1k chr14 280 255 282837 282862 C 26 100.00 1220 reject_low 8 ALIGNMENT 162 Y12-5c21.q1k chr14 280 71 282657 282866 C 210 93.81 1220 reject_low 2 ALIGNMENT 131 Y12-5c21.q1k chr14 220 32 282537 282725 C 189 91.53 1220 reject_low 3 ALIGNMENT 0 Y12-5c21.q1k chr14 834 281 282598 282597 C 554 0.00 1220 reject_low 1 ALIGNMENT 0 Y12-5c21.q1k chr14 834 161 282538 282537 C 674 0.00 1220 reject_low 5 ALIGNMENT 0 Y12-5c21.q1k chr14 134 62 282863 282862 C 73 0.00 1220 reject_low 4 ALIGNMENT 959 Y12-5c21.p1k chr14 18 1202 278519 279715 F 1185 95.11 1214 accept 0 ALIGNMENT 0 Y12-5c21.q1k chr14 834 101 282538 282537 C 734 0.00 1220 reject_low 7 ALIGNMENT 0 Y12-5c21.q1k chr14 254 62 282863 282862 C 193 0.00 1220 reject_low 8 ALIGNMENT 0 Y12-5c21.q1k chr14 834 281 282718 282717 C 554 0.00 1220 reject_low 4 ALIGNMENT 850 Y12-5c22.p1k chr04 32 1061 1379581 1380625 F 1030 96.31 1226 accept 0 ALIGNMENT 1030 Y12-5c22.q1k chr04 1216 37 1383702 1384870 C 1180 97.46 1222 accept 0 ALIGNMENT 1008 Y12-5c23.q1k chr11 1125 27 573100 574204 C 1099 97.82 1133 accept 0 ALIGNMENT 939 Y12-5c23.p1k chr11 31 1152 569942 571081 F 1122 95.99 1251 accept 0 ALIGNMENT 922 Y12-5c24.q1k chr10 35 1062 26073 27093 F 1028 97.86 1211 accept 0 ALIGNMENT 86 Y12-5d01.q1k chr13 483 397 586623 586709 C 87 100.00 1236 reject_low 3 ALIGNMENT 0 Y12-5d01.q1k chr08 660 479 85288 85287 C 182 0.00 1236 reject_low 9 ALIGNMENT 0 Y12-5d01.q1k chr13 660 479 372438 372437 C 182 0.00 1236 reject_low 2 ALIGNMENT 75 Y12-5d01.q1k chr07 471 397 412297 412371 C 75 100.00 1236 reject_low 13 ALIGNMENT 0 Y12-5d01.q1k chr15 394 62 663889 663888 C 333 0.00 1236 reject_low 6 ALIGNMENT 0 Y12-5d01.q1k chr11 394 62 307866 307865 C 333 0.00 1236 reject_low 5 ALIGNMENT 0 Y12-5d01.q1k chr10 62 397 378276 378275 F 336 0.00 1236 reject_low 7 ALIGNMENT 79 Y12-5d01.q1k chr12 477 398 687855 687934 C 80 100.00 1236 reject_low 10 ALIGNMENT 0 Y12-5d01.q1k chr05 479 660 438776 438775 F 182 0.00 1236 reject_low 12 ALIGNMENT 0 Y12-5d01.q1k chr13 660 484 586624 586623 C 177 0.00 1236 reject_low 3 ALIGNMENT 0 Y12-5d01.q1k chr13 379 62 372537 372536 C 318 0.00 1236 reject_low 2 ALIGNMENT 82 Y12-5d01.q1k chr13 478 380 372437 372536 C 99 94.95 1236 reject_low 2 ALIGNMENT 0 Y12-5d01.q1k chr07 396 62 412372 412371 C 335 0.00 1236 reject_low 13 ALIGNMENT 0 Y12-5d01.q1k chr05 478 660 469531 469530 F 183 0.00 1236 reject_low 8 ALIGNMENT 0 Y12-5d01.q1k chr07 660 479 73822 73821 C 182 0.00 1236 reject_low 4 ALIGNMENT 0 Y12-5d01.q1k chr11 660 479 307783 307782 C 182 0.00 1236 reject_low 5 ALIGNMENT 0 Y12-5d01.q1k chr05 62 397 438696 438695 F 336 0.00 1236 reject_low 12 ALIGNMENT 0 Y12-5d01.q1k chr07 62 239 823329 823328 F 178 0.00 1236 accept 0 ALIGNMENT 0 Y12-5d01.q1k chr13 660 477 420583 420582 C 184 0.00 1236 reject_low 11 ALIGNMENT 80 Y12-5d01.q1k chr11 478 395 307782 307865 C 84 98.81 1236 reject_low 5 ALIGNMENT 0 Y12-5d01.q1k chr08 396 62 85369 85368 C 335 0.00 1236 reject_low 9 ALIGNMENT 80 Y12-5d01.q1k chr05 397 477 469451 469531 F 81 100.00 1236 reject_low 8 ALIGNMENT 79 Y12-5d01.q1k chr13 476 398 420582 420660 C 79 100.00 1236 reject_low 11 ALIGNMENT 0 Y12-5d01.q1k chr07 394 62 73905 73904 C 333 0.00 1236 reject_low 4 ALIGNMENT 0 Y12-5d01.q1k chr13 396 62 586710 586709 C 335 0.00 1236 reject_low 3 ALIGNMENT 765 Y12-5d01.p1k chr07 1070 18 826816 827862 C 1053 92.69 1419 accept 0 ALIGNMENT 0 Y12-5d01.q1k chr13 397 62 420661 420660 C 336 0.00 1236 reject_low 11 ALIGNMENT 0 Y12-5d01.q1k chr12 397 62 687935 687934 C 336 0.00 1236 reject_low 10 ALIGNMENT 0 Y12-5d01.q1k chr10 480 660 378357 378356 F 181 0.00 1236 reject_low 7 ALIGNMENT 220 Y12-5d01.q1k chr07 3 245 811210 811451 F 243 98.35 1236 reject_low 1 ALIGNMENT 0 Y12-5d01.q1k chr11 62 397 379323 379322 F 336 0.00 1236 reject_low 14 ALIGNMENT 0 Y12-5d01.q1k chr15 660 477 663808 663807 C 184 0.00 1236 reject_low 6 ALIGNMENT 77 Y12-5d01.q1k chr05 398 478 438696 438776 F 81 98.77 1236 reject_low 12 ALIGNMENT 0 Y12-5d01.q1k chr12 660 478 687856 687855 C 183 0.00 1236 reject_low 10 ALIGNMENT 79 Y12-5d01.q1k chr15 476 395 663807 663888 C 82 98.78 1236 reject_low 6 ALIGNMENT 0 Y12-5d01.q1k chr05 62 396 469451 469450 F 335 0.00 1236 reject_low 8 ALIGNMENT 80 Y12-5d01.q1k chr07 478 395 73821 73904 C 84 98.81 1236 reject_low 4 ALIGNMENT 74 Y12-5d01.q1k chr11 398 471 379323 379396 F 74 100.00 1236 reject_low 14 ALIGNMENT 495 Y12-5d01.q1k chr07 240 881 823329 823957 F 642 95.17 1236 accept 0 ALIGNMENT 78 Y12-5d01.q1k chr10 398 479 378276 378357 F 82 98.78 1236 reject_low 7 ALIGNMENT 0 Y12-5d01.q1k chr11 472 660 379396 379395 F 189 0.00 1236 reject_low 14 ALIGNMENT 0 Y12-5d01.q1k chr07 660 472 412298 412297 C 189 0.00 1236 reject_low 13 ALIGNMENT 78 Y12-5d01.q1k chr08 478 397 85287 85368 C 82 98.78 1236 reject_low 9 ALIGNMENT 0 Y12-5d01.q1k chr07 246 660 811451 811450 F 415 0.00 1236 reject_low 1 ALIGNMENT 681 Y12-5d02.p1k chr08 781 17 83870 84635 C 765 97.52 1383 accept 0 ALIGNMENT 587 Y12-5d02.q1k chr08 4 987 78759 79724 F 984 89.02 1232 accept 0 ALIGNMENT 559 Y12-5d03.p1k chr08 20 690 231406 232074 F 671 95.08 1383 accept 0 ALIGNMENT 867 Y12-5d03.q1k chr08 1032 30 234335 235333 C 1003 96.51 1313 accept 0 ALIGNMENT 836 Y12-5d04.q1k chr15 964 25 54844 55792 C 940 97.02 1329 accept 0 ALIGNMENT 946 Y12-5d04.p1k chr15 20 1159 49882 51036 F 1140 95.96 1313 accept 0 ALIGNMENT 978 Y12-5d05.q1k chr12 1182 30 455061 456199 C 1153 96.36 1281 accept 0 ALIGNMENT 978 Y12-5d05.q1k chr12 1182 30 464198 465336 C 1153 96.36 1281 accept 1 ALIGNMENT 733 Y12-5d05.p1k chr12 18 878 451430 452289 F 861 96.28 1360 accept 0 ALIGNMENT 435 Y12-5d05.p1k chr12 376 878 489754 490257 F 503 96.02 1360 reject_low 2 ALIGNMENT 0 Y12-5d05.p1k chr12 62 375 489754 489753 F 314 0.00 1360 reject_low 2 ALIGNMENT 733 Y12-5d05.p1k chr12 18 878 460567 461426 F 861 96.28 1360 accept 1 ALIGNMENT 628 Y12-5d06.p1k chr05 946 31 232125 233052 C 916 90.72 1317 accept 0 ALIGNMENT 870 Y12-5d06.q1k chr05 28 1102 227641 228722 F 1075 94.79 1278 accept 0 ALIGNMENT 856 Y12-5d07.p1k chr04 1079 26 1506827 1507882 C 1054 94.50 1362 reject_bad_break 0 ALIGNMENT 0 Y12-5d07.q1k chr04 287 339 1503902 1504485 F 53 0.00 1328 reject_low 3 ALIGNMENT 243 Y12-5d07.q1k chr04 340 686 1504276 1504620 F 347 90.49 1328 reject_low 1 ALIGNMENT 31 Y12-5d07.q1k chr04 228 286 1503843 1503901 F 59 84.75 1328 reject_low 1,2,3,4 ALIGNMENT 0 Y12-5d07.q1k chr04 114 227 1503807 1503842 F 114 0.00 1328 reject_low 1,2,3,4 ALIGNMENT 33 Y12-5d07.q1k chr04 60 113 1503752 1503806 F 54 88.89 1328 reject_bad_break 0 reject_low 1,2,3,4 ALIGNMENT 128 Y12-5d07.q1k chr04 340 513 1504486 1504659 F 174 91.38 1328 reject_low 3 ALIGNMENT 0 Y12-5d07.q1k chr04 114 227 1503807 1503968 F 114 0.00 1328 reject_bad_break 0 ALIGNMENT 75 Y12-5d07.q1k chr04 735 876 1504068 1504207 F 142 85.21 1328 reject_low 4 ALIGNMENT 197 Y12-5d07.q1k chr04 554 898 1504083 1504424 F 345 86.38 1328 reject_low 2 ALIGNMENT 0 Y12-5d07.q1k chr04 287 734 1503902 1504067 F 448 0.00 1328 reject_low 4 ALIGNMENT 310 Y12-5d07.q1k chr04 228 913 1503969 1504649 F 686 83.38 1328 reject_bad_break 0 ALIGNMENT 0 Y12-5d07.q1k chr04 287 339 1503902 1504275 F 53 0.00 1328 reject_low 1 ALIGNMENT 0 Y12-5d07.q1k chr04 287 553 1503902 1504082 F 267 0.00 1328 reject_low 2 ALIGNMENT 911 Y12-5d08.q1k chr15 32 1067 818240 819267 F 1036 97.49 1281 accept 0 ALIGNMENT 858 Y12-5d08.p1k chr15 1074 18 821257 822300 C 1057 96.22 1487 accept 0 ALIGNMENT 916 Y12-5d10.p1k chr15 1122 21 995670 996768 C 1102 95.55 1340 accept 0 ALIGNMENT 933 Y12-5d10.q1k chr15 34 1182 992242 993391 F 1149 95.21 1234 accept 0 ALIGNMENT 905 Y12-5d11.p1k chr08 15 1168 262282 263430 F 1154 94.63 1375 accept 0 ALIGNMENT 979 Y12-5d11.q1k chr08 1214 29 265043 266234 C 1186 95.36 1304 accept 0 ALIGNMENT 931 Y12-5d12.q1k chr11 1144 29 543165 544266 C 1116 96.42 1391 accept 0 ALIGNMENT 893 Y12-5d12.p1k chr11 21 1036 538302 539326 F 1016 97.34 1326 accept 0 ALIGNMENT 805 Y12-5d13.p1k chr06 952 24 173233 174164 C 929 96.88 1344 accept 0 ALIGNMENT 874 Y12-5d13.q1k chr06 33 1018 169331 170306 F 986 97.67 1339 accept 0 ALIGNMENT 0 Y12-5d14.q1k chr02 867 189 236508 236507 C 679 0.00 1323 reject_low 1 ALIGNMENT 1007 Y12-5d14.q1k chr04 35 1210 914541 915702 F 1176 96.51 1323 accept 0 ALIGNMENT 78 Y12-5d14.q1k chr02 188 35 236507 236660 C 154 85.06 1323 reject_low 1 ALIGNMENT 980 Y12-5d14.p1k chr04 1217 20 917576 918780 C 1198 95.24 1314 accept 0 ALIGNMENT 20 Y12-5d15.p1k chr06 824 876 186206 186258 F 53 98.11 1263 reject_low 7 ALIGNMENT 0 Y12-5d15.p1k chr15 814 62 630529 630528 C 753 0.00 1263 reject_low 4 ALIGNMENT 20 Y12-5d15.p1k chr15 850 815 630493 630528 C 36 97.22 1263 reject_low 4 ALIGNMENT 0 Y12-5d15.p1k chr13 821 62 587707 587706 C 760 0.00 1263 reject_low 3 ALIGNMENT 0 Y12-5d15.p1k chr06 62 823 186206 186205 F 762 0.00 1263 reject_low 7 ALIGNMENT 913 Y12-5d15.p1k chr13 1104 20 86756 87861 C 1085 96.68 1263 accept 0 ALIGNMENT 0 Y12-5d15.p1k chr09 62 821 105768 105767 F 760 0.00 1263 reject_low 5 ALIGNMENT 949 Y12-5d15.q1k chr13 35 1100 81281 82362 F 1066 97.94 1230 accept 0 ALIGNMENT 26 Y12-5d15.p1k chr09 822 880 105768 105826 F 59 100.00 1263 reject_low 5 ALIGNMENT 0 Y12-5d15.p1k chr04 819 62 778827 778826 C 758 0.00 1263 reject_low 1 ALIGNMENT 0 Y12-5d15.p1k chr10 62 821 470038 470037 F 760 0.00 1263 reject_low 6 ALIGNMENT 27 Y12-5d15.p1k chr16 916 822 650471 650565 C 95 91.58 1263 reject_low 2 ALIGNMENT 0 Y12-5d15.p1k chr16 821 62 650566 650565 C 760 0.00 1263 reject_low 2 ALIGNMENT 22 Y12-5d15.p1k chr10 822 878 470038 470094 F 57 98.25 1263 reject_low 6 ALIGNMENT 40 Y12-5d15.p1k chr04 919 820 778727 778826 C 100 94.00 1263 reject_low 1 ALIGNMENT 26 Y12-5d15.p1k chr13 898 822 587630 587706 C 77 94.81 1263 reject_low 3 ALIGNMENT 855 Y12-5d16.p1k chr16 16 1035 307857 308884 F 1020 95.88 1288 accept 0 ALIGNMENT 778 Y12-5d16.q1k chr16 931 30 310844 311742 C 902 96.56 1306 accept 0 ALIGNMENT 839 Y12-5d18.p1k chr13 1035 23 769151 770164 C 1013 95.16 1297 accept 0 ALIGNMENT 840 Y12-5d18.q1k chr13 37 1005 763388 764351 F 969 97.32 1311 accept 0 ALIGNMENT 1004 Y12-5d19.p1k chr10 18 1218 465531 466732 F 1201 95.00 1271 accept 0 ALIGNMENT 0 Y12-5d19.q1k chr06 440 62 186258 186257 C 379 0.00 1324 reject_low 3 ALIGNMENT 23 Y12-5d19.q1k chr09 492 441 105770 105821 C 52 98.08 1324 reject_low 2 ALIGNMENT 24 Y12-5d19.q1k chr16 441 493 650491 650543 F 53 96.23 1324 reject_low 1 ALIGNMENT 0 Y12-5d19.q1k chr09 440 62 105822 105821 C 379 0.00 1324 reject_low 2 ALIGNMENT 0 Y12-5d19.q1k chr06 808 493 186207 186206 C 316 0.00 1324 reject_low 3 ALIGNMENT 0 Y12-5d19.q1k chr09 808 493 105771 105770 C 316 0.00 1324 reject_low 2 ALIGNMENT 823 Y12-5d19.q1k chr10 942 34 469594 470501 C 909 98.24 1324 accept 0 ALIGNMENT 0 Y12-5d19.q1k chr16 62 440 650491 650490 F 379 0.00 1324 reject_low 1 ALIGNMENT 0 Y12-5d19.q1k chr16 494 808 650543 650542 F 315 0.00 1324 reject_low 1 ALIGNMENT 20 Y12-5d19.q1k chr06 492 441 186206 186257 C 52 96.15 1324 reject_low 3 ALIGNMENT 1002 Y12-5d20.p1k chr12 1160 22 455545 456695 C 1139 96.58 1270 manual 1 ALIGNMENT 654 Y12-5d20.q1k chr12 413 1200 489754 490543 F 788 95.05 1299 reject_low 2 ALIGNMENT 1008 Y12-5d20.q1k chr12 43 1252 451419 452630 F 1210 95.45 1299 manual 1 ALIGNMENT 1002 Y12-5d20.p1k chr12 1160 22 464682 465832 C 1139 96.58 1270 manual 0 ALIGNMENT 1012 Y12-5d20.q1k chr12 39 1252 460552 461767 F 1214 95.47 1299 manual 0 ALIGNMENT 0 Y12-5d20.q1k chr12 62 412 489754 489753 F 351 0.00 1299 reject_low 2 ALIGNMENT 0 Y12-5d21.p1k chr08 394 790 216808 216807 F 397 0.00 1247 reject_low 1 ALIGNMENT 342 Y12-5d21.p1k chr08 30 393 216445 216808 F 364 99.18 1247 reject_low 1 ALIGNMENT 0 Y12-5d21.p1k chr08 62 393 212158 212157 F 332 0.00 1247 accept 0 ALIGNMENT 0 Y12-5d21.p1k chr08 62 495 214265 214264 F 434 0.00 1247 reject_low 2 ALIGNMENT 0 Y12-5d21.q1k chr08 578 62 214256 214255 C 517 0.00 1267 reject_low 3 ALIGNMENT 811 Y12-5d21.q1k chr08 986 30 215847 216802 C 957 96.45 1267 accept 0 ALIGNMENT 442 Y12-5d21.p1k chr08 394 951 212158 212725 F 558 95.16 1247 accept 0 ALIGNMENT 298 Y12-5d21.q1k chr08 986 579 213849 214255 C 408 92.65 1267 reject_low 3 ALIGNMENT 368 Y12-5d21.p1k chr08 496 951 214265 214723 F 456 95.61 1247 reject_low 2 ALIGNMENT 0 Y12-5d22.q1k chr03 62 242 243046 243045 F 181 0.00 1294 reject_low 1 ALIGNMENT 97 Y12-5d22.q1k chr03 243 659 243046 243462 F 417 75.54 1294 reject_low 1 ALIGNMENT 0 Y12-5d22.q1k chr03 660 871 243462 243461 F 212 0.00 1294 reject_low 1 ALIGNMENT 917 Y12-5d22.q1k chr14 30 1034 680993 681994 F 1005 98.51 1294 accept 0 ALIGNMENT 996 Y12-5d22.p1k chr14 1196 22 685121 686304 C 1175 95.66 1284 accept 0 ALIGNMENT 0 Y12-5d23.p1k chr08 290 493 321978 321977 F 204 0.00 1132 reject_low 1 ALIGNMENT 224 Y12-5d23.p1k chr02 678 312 364839 365195 C 367 90.19 1132 accept 0 ALIGNMENT 184 Y12-5d23.p1k chr08 49 289 321736 321978 F 241 94.19 1132 reject_low 1 ALIGNMENT 1004 Y12-5d23.q1k chr02 41 1165 359044 360166 F 1125 97.51 1195 accept 0 ALIGNMENT 1002 Y12-5d24.p1k chr02 23 1206 143626 144815 F 1184 96.37 1314 accept 0 ALIGNMENT 1012 Y12-5d24.q1k chr02 1198 40 146807 147958 C 1159 97.07 1203 accept 0 ALIGNMENT 725 Y12-5e01.q1k chr04 850 38 1077644 1078455 C 813 97.79 1235 accept 0 ALIGNMENT 478 Y12-5e01.p1k chr04 29 589 1073403 1073963 F 561 96.26 1362 accept 0 ALIGNMENT 770 Y12-5e02.q1k chr10 1010 23 96459 97439 C 988 94.03 1197 accept 0 ALIGNMENT 932 Y12-5e03.q1k chr04 36 1054 1442375 1443385 F 1019 98.82 1228 accept 0 ALIGNMENT 0 Y12-5e03.q1k chr04 1055 1127 1443386 1443444 F 73 0.00 1228 accept 0 ALIGNMENT 902 Y12-5e03.p1k chr04 1130 19 1447249 1448361 C 1112 95.77 1277 accept 0 ALIGNMENT 21 Y12-5e03.q1k chr04 1128 1202 1443445 1443509 F 75 85.33 1228 accept 0 ALIGNMENT 1002 Y12-5e05.p1k chr04 1221 18 562861 564068 C 1204 95.43 1310 accept 0 ALIGNMENT 770 Y12-5e05.q1k chr04 35 1110 560414 561485 F 1076 91.73 1262 accept 0 ALIGNMENT 63 Y12-5e07.p1k chr04 22 113 915832 915924 F 92 90.22 1268 reject_low 1 ALIGNMENT 861 Y12-5e07.q1k chr02 37 983 231312 232256 F 947 98.20 1197 accept 0 ALIGNMENT 0 Y12-5e07.p1k chr04 114 875 915924 915923 F 762 0.00 1268 reject_low 1 ALIGNMENT 998 Y12-5e07.p1k chr02 1176 22 234320 235487 C 1155 96.97 1268 accept 0 ALIGNMENT 23 Y12-5e08.p1k chr15 482 536 110791 110845 F 55 90.91 1309 reject_low 2 ALIGNMENT 0 Y12-5e08.p1k chr15 537 690 110845 110844 F 154 0.00 1309 reject_low 2 ALIGNMENT 371 Y12-5e08.q1k chr12 775 360 108978 109398 C 416 97.12 1194 reject_low 1 ALIGNMENT 0 Y12-5e08.p1k chr15 62 481 110791 110790 F 420 0.00 1309 reject_low 2 ALIGNMENT 0 Y12-5e08.q1k chr12 845 776 108979 108978 C 70 0.00 1194 reject_low 1 ALIGNMENT 896 Y12-5e08.q1k chr12 1115 35 108648 109723 C 1081 95.37 1194 accept 0 ALIGNMENT 25 Y12-5e08.q1k chr12 550 577 109176 109203 F 28 100.00 1194 reject_low 3 ALIGNMENT 0 Y12-5e08.q1k chr12 62 549 109176 109175 F 488 0.00 1194 reject_low 3 ALIGNMENT 0 Y12-5e08.q1k chr12 578 845 109203 109202 F 268 0.00 1194 reject_low 3 ALIGNMENT 712 Y12-5e08.p1k chr12 21 1004 104956 105934 F 984 93.19 1309 accept 0 ALIGNMENT 0 Y12-5e08.q1k chr12 359 62 109399 109398 C 298 0.00 1194 reject_low 1 ALIGNMENT 930 Y12-5e10.p1k chr11 21 1102 630347 631431 F 1082 96.40 1354 accept 0 ALIGNMENT 1060 Y12-5e10.q1k chr11 1236 38 633496 634703 C 1199 97.16 1292 accept 0 ALIGNMENT 920 Y12-5e12.p1k chr14 1068 19 295914 296958 C 1050 97.14 1388 accept 0 ALIGNMENT 892 Y12-5e12.q1k chr14 31 1101 292585 293642 F 1071 96.27 1303 accept 0 ALIGNMENT 0 Y12-5e14.p1k chr10 62 586 526282 526281 F 525 0.00 1329 reject_low 1 ALIGNMENT 101 Y12-5e14.p1k chr10 587 858 526282 526553 F 272 80.15 1329 reject_low 1 ALIGNMENT 0 Y12-5e14.p1k chr10 859 895 526553 526552 F 37 0.00 1329 reject_low 1 ALIGNMENT 977 Y12-5e14.p1k chr05 1123 19 79389 80502 C 1105 96.83 1329 accept 0 ALIGNMENT 432 Y12-5e15.q1k chr07 934 279 556524 557164 C 656 91.01 1354 accept 0 ALIGNMENT 977 Y12-5e16.q1k chr09 36 1202 42656 43841 F 1167 96.06 1242 accept 0 ALIGNMENT 1006 Y12-5e16.p1k chr09 1129 22 46517 47624 C 1108 97.65 1317 accept 0 ALIGNMENT 994 Y12-5e17.p1k chr02 1223 18 311585 312802 C 1206 94.86 1226 accept 0 ALIGNMENT 987 Y12-5e17.q1k chr02 37 1248 308423 309642 F 1212 94.97 1286 accept 0 ALIGNMENT 976 Y12-5e18.p1k chr16 25 1247 539630 540851 F 1223 95.18 1292 accept 0 ALIGNMENT 973 Y12-5e18.q1k chr16 1134 34 542746 543852 C 1101 97.37 1310 accept 0 ALIGNMENT 883 Y12-5e19.p1k chr16 1100 23 839801 840857 C 1078 95.55 1280 accept 0 ALIGNMENT 925 Y12-5e19.q1k chr16 40 1203 836929 838112 F 1164 95.02 1204 accept 0 ALIGNMENT 1021 Y12-5e20.p1k chr05 1174 18 27169 28329 C 1157 96.72 1277 accept 0 ALIGNMENT 914 Y12-5e20.q1k chr05 31 1045 24199 25206 F 1015 98.03 1275 accept 0 ALIGNMENT 1018 Y12-5e22.q1k chr15 38 1212 1025008 1026174 F 1175 97.11 1218 accept 0 ALIGNMENT 993 Y12-5e22.p1k chr15 1148 20 1029718 1030854 C 1129 96.37 1274 accept 0 ALIGNMENT 908 Y12-5e23.p1k chr13 1177 22 190980 192127 C 1156 95.76 1199 accept_trans 0 ALIGNMENT 986 Y12-5e23.q1k chr13 40 1167 180955 182074 F 1128 97.43 1168 accept_trans 0 ALIGNMENT 948 Y12-5e24.p1k chr05 19 1204 239414 240612 F 1186 95.11 1223 accept 0 ALIGNMENT 899 Y12-5e24.q1k chr05 1068 32 242286 243318 C 1037 96.43 1260 accept 0 ALIGNMENT 950 Y12-5f02.p1k chr06 1238 27 95158 96360 C 1212 93.98 1341 accept_chi 0 ALIGNMENT 582 Y12-5f02.q1k chr15 860 41 60236 61054 C 820 91.34 1149 accept_chi 1 ALIGNMENT 75 Y12-5f03.q1k chr07 525 451 412297 412371 C 75 100.00 1234 reject_low 13 ALIGNMENT 0 Y12-5f03.q1k chr13 891 538 586624 586623 C 354 0.00 1234 reject_low 3 ALIGNMENT 0 Y12-5f03.q1k chr07 450 62 412372 412371 C 389 0.00 1234 reject_low 13 ALIGNMENT 80 Y12-5f03.q1k chr05 451 531 469451 469531 F 81 100.00 1234 reject_low 8 ALIGNMENT 86 Y12-5f03.q1k chr13 537 451 586623 586709 C 87 100.00 1234 reject_low 3 ALIGNMENT 0 Y12-5f03.q1k chr07 891 533 73822 73821 C 359 0.00 1234 reject_low 4 ALIGNMENT 0 Y12-5f03.q1k chr13 891 533 372438 372437 C 359 0.00 1234 reject_low 2 ALIGNMENT 80 Y12-5f03.q1k chr07 532 449 73821 73904 C 84 98.81 1234 reject_low 4 ALIGNMENT 0 Y12-5f03.q1k chr08 891 533 85288 85287 C 359 0.00 1234 reject_low 9 ALIGNMENT 0 Y12-5f03.q1k chr08 450 62 85369 85368 C 389 0.00 1234 reject_low 9 ALIGNMENT 0 Y12-5f03.q1k chr05 62 450 469451 469450 F 389 0.00 1234 reject_low 8 ALIGNMENT 74 Y12-5f03.q1k chr11 452 525 379323 379396 F 74 100.00 1234 reject_low 14 ALIGNMENT 0 Y12-5f03.q1k chr07 300 891 811451 811450 F 592 0.00 1234 reject_low 1 ALIGNMENT 0 Y12-5f03.q1k chr11 891 533 307783 307782 C 359 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-5f03.q1k chr10 62 451 378276 378275 F 390 0.00 1234 reject_low 7 ALIGNMENT 0 Y12-5f03.q1k chr07 891 526 412298 412297 C 366 0.00 1234 reject_low 13 ALIGNMENT 0 Y12-5f03.q1k chr13 433 62 372537 372536 C 372 0.00 1234 reject_low 2 ALIGNMENT 0 Y12-5f03.q1k chr07 62 293 823329 823328 F 232 0.00 1234 accept 0 ALIGNMENT 1003 Y12-5f03.p1k chr07 1157 18 826724 827872 C 1140 97.19 1337 accept 0 ALIGNMENT 0 Y12-5f03.q1k chr12 891 532 687856 687855 C 360 0.00 1234 reject_low 10 ALIGNMENT 0 Y12-5f03.q1k chr12 451 62 687935 687934 C 390 0.00 1234 reject_low 10 ALIGNMENT 80 Y12-5f03.q1k chr11 532 449 307782 307865 C 84 98.81 1234 reject_low 5 ALIGNMENT 0 Y12-5f03.q1k chr15 891 531 663808 663807 C 361 0.00 1234 reject_low 6 ALIGNMENT 79 Y12-5f03.q1k chr15 530 449 663807 663888 C 82 98.78 1234 reject_low 6 ALIGNMENT 0 Y12-5f03.q1k chr10 534 891 378357 378356 F 358 0.00 1234 reject_low 7 ALIGNMENT 0 Y12-5f03.q1k chr05 62 451 438696 438695 F 390 0.00 1234 reject_low 12 ALIGNMENT 79 Y12-5f03.q1k chr13 530 452 420582 420660 C 79 100.00 1234 reject_low 11 ALIGNMENT 0 Y12-5f03.q1k chr11 448 62 307866 307865 C 387 0.00 1234 reject_low 5 ALIGNMENT 0 Y12-5f03.q1k chr11 526 891 379396 379395 F 366 0.00 1234 reject_low 14 ALIGNMENT 0 Y12-5f03.q1k chr13 451 62 420661 420660 C 390 0.00 1234 reject_low 11 ALIGNMENT 0 Y12-5f03.q1k chr13 891 531 420583 420582 C 361 0.00 1234 reject_low 11 ALIGNMENT 0 Y12-5f03.q1k chr11 62 451 379323 379322 F 390 0.00 1234 reject_low 14 ALIGNMENT 79 Y12-5f03.q1k chr12 531 452 687855 687934 C 80 100.00 1234 reject_low 10 ALIGNMENT 774 Y12-5f03.q1k chr07 294 1234 823329 824274 F 941 95.32 1234 accept 0 ALIGNMENT 78 Y12-5f03.q1k chr08 532 451 85287 85368 C 82 98.78 1234 reject_low 9 ALIGNMENT 0 Y12-5f03.q1k chr05 532 891 469531 469530 F 360 0.00 1234 reject_low 8 ALIGNMENT 253 Y12-5f03.q1k chr07 39 299 811191 811451 F 261 100.00 1234 reject_low 1 ALIGNMENT 77 Y12-5f03.q1k chr05 452 532 438696 438776 F 81 98.77 1234 reject_low 12 ALIGNMENT 0 Y12-5f03.q1k chr05 533 891 438776 438775 F 359 0.00 1234 reject_low 12 ALIGNMENT 78 Y12-5f03.q1k chr10 452 533 378276 378357 F 82 98.78 1234 reject_low 7 ALIGNMENT 82 Y12-5f03.q1k chr13 532 434 372437 372536 C 99 94.95 1234 reject_low 2 ALIGNMENT 0 Y12-5f03.q1k chr15 448 62 663889 663888 C 387 0.00 1234 reject_low 6 ALIGNMENT 0 Y12-5f03.q1k chr13 450 62 586710 586709 C 389 0.00 1234 reject_low 3 ALIGNMENT 0 Y12-5f03.q1k chr07 448 62 73905 73904 C 387 0.00 1234 reject_low 4 ALIGNMENT 266 Y12-5f04.p1k chr04 490 20 888272 888736 C 471 86.62 1495 accept 0 ALIGNMENT 920 Y12-5f05.q1k chr04 1184 37 934506 935655 C 1148 94.86 1289 accept 0 ALIGNMENT 881 Y12-5f05.p1k chr04 28 1042 929360 930382 F 1015 96.95 1275 accept 0 ALIGNMENT 852 Y12-5f07.p1k chr11 1001 22 452617 453610 C 980 97.55 1283 accept 0 ALIGNMENT 938 Y12-5f07.q1k chr11 38 1114 448240 449313 F 1077 96.75 1170 accept 0 ALIGNMENT 756 Y12-5f08.p1k chr07 1062 25 211238 212281 C 1038 92.20 1303 accept 0 ALIGNMENT 799 Y12-5f08.q1k chr07 33 1175 208390 209508 F 1143 91.43 1188 accept 0 ALIGNMENT 0 Y12-5f08.q1k chr07 133 689 423987 423986 F 557 0.00 1188 reject_low 1 ALIGNMENT 65 Y12-5f08.q1k chr07 690 1045 423987 424343 F 356 73.03 1188 reject_low 1 ALIGNMENT 702 Y12-5f09.p1k chr12 16 848 776010 776834 F 833 96.88 1459 accept 0 ALIGNMENT 966 Y12-5f09.q1k chr12 1150 27 780320 781442 C 1124 96.89 1275 accept 0 ALIGNMENT 898 Y12-5f12.q1k chr15 1147 33 671785 672890 C 1115 95.34 1350 accept 0 ALIGNMENT 832 Y12-5f12.p1k chr15 22 1170 669036 670176 F 1149 93.04 1339 accept 0 ALIGNMENT 921 Y12-5f13.p1k chr02 18 1132 460659 461776 F 1115 95.43 1325 accept 0 ALIGNMENT 879 Y12-5f14.p1k chr16 20 968 506397 507349 F 949 98.10 1358 accept 0 ALIGNMENT 837 Y12-5f15.q1k chr04 26 988 921432 922386 F 963 97.92 1286 accept 0 ALIGNMENT 986 Y12-5f15.p1k chr04 1179 16 925855 927006 C 1164 95.88 1341 accept 0 ALIGNMENT 1016 Y12-5f16.p1k chr03 14 1182 72359 73543 F 1169 96.66 1311 accept 0 ALIGNMENT 885 Y12-5f16.q1k chr03 1033 33 75554 76551 C 1001 97.40 1265 accept 0 ALIGNMENT 908 Y12-5f17.p1k chr02 28 1112 165906 166985 F 1085 96.41 1299 accept_chi 0 ALIGNMENT 832 Y12-5f17.q1k chr14 968 30 218212 219154 C 939 97.87 1350 accept_chi 1 ALIGNMENT 966 Y12-5f18.q1k chr13 1140 36 513477 514599 C 1105 97.10 1306 accept_chi 0 ALIGNMENT 673 Y12-5f18.p1k chr04 81 996 1008002 1008918 F 916 92.69 1243 accept_chi 1 ALIGNMENT 833 Y12-5f19.q1k chr06 30 981 16580 17521 F 952 96.95 1339 accept 0 ALIGNMENT 999 Y12-5f19.p1k chr06 1177 50 20452 21585 C 1128 97.16 1248 accept 0 ALIGNMENT 978 Y12-5f20.p1k chr07 29 1128 341744 342847 F 1100 96.82 1275 accept 0 ALIGNMENT 1010 Y12-5f20.q1k chr07 1184 36 345427 346581 C 1149 96.87 1272 accept 0 ALIGNMENT 1006 Y12-5f22.p1k chr16 19 1195 409456 410641 F 1177 96.01 1254 accept 0 ALIGNMENT 905 Y12-5f22.q1k chr16 1047 34 413241 414255 C 1014 97.44 1231 accept 0 ALIGNMENT 0 Y12-5f24.p1k chr12 836 459 451420 451419 C 378 0.00 1247 reject_low 2 ALIGNMENT 733 Y12-5f24.p1k chr12 1168 37 459817 460973 C 1132 90.37 1247 accept 0 ALIGNMENT 956 Y12-5f24.q1k chr12 32 1141 466041 467139 F 1110 96.94 1246 reject_low 1 ALIGNMENT 956 Y12-5f24.q1k chr12 32 1141 456904 458002 F 1110 96.94 1246 accept 0 ALIGNMENT 345 Y12-5f24.p1k chr12 458 37 451419 451836 C 422 96.21 1247 reject_low 2 ALIGNMENT 1032 Y12-5g01.q1k chr01 36 1148 157019 158134 F 1113 98.20 1148 accept_trans 0 ALIGNMENT 947 Y12-5g01.p1k chr01 1151 26 166295 167424 C 1126 96.00 1248 accept_trans 0 ALIGNMENT 928 Y12-5g02.q1k chr04 1050 30 1053703 1054718 C 1021 98.24 1237 accept 0 ALIGNMENT 724 Y12-5g02.p1k chr04 25 949 1048872 1049792 F 925 93.84 1313 accept 0 ALIGNMENT 960 Y12-5g03.q1k chr02 39 1158 63826 64951 F 1120 96.25 1158 accept_chi 0 ALIGNMENT 739 Y12-5g03.p1k chr14 145 1179 152893 153939 F 1035 91.50 1264 accept_chi 1 ALIGNMENT 976 Y12-5g04.q1k chr04 1182 33 1069094 1070244 C 1150 96.61 1188 accept 0 ALIGNMENT 810 Y12-5g04.p1k chr04 212 1259 1064520 1065578 F 1048 93.89 1368 accept 0 ALIGNMENT 1019 Y12-5g06.q1k chr03 1160 35 71744 72872 C 1126 97.42 1280 accept 0 ALIGNMENT 1023 Y12-5g06.p1k chr03 32 1214 68976 70160 F 1183 96.28 1350 accept 0 ALIGNMENT 392 Y12-5g07.q1k chr12 456 37 667995 668414 C 420 99.29 1334 reject_bad_break 0 ALIGNMENT 429 Y12-5g07.q1k chr12 1031 463 667460 668018 C 569 93.67 1334 reject_bad_break 0 ALIGNMENT 874 Y12-5g07.p1k chr12 27 1047 663791 664801 F 1021 96.38 1343 reject_bad_break 0 ALIGNMENT 0 Y12-5g07.q1k chr12 462 457 668019 667994 C 6 0.00 1334 reject_bad_break 0 ALIGNMENT 1009 Y12-5g08.q1k chr07 1160 35 492533 493673 C 1126 96.98 1313 accept 0 ALIGNMENT 1029 Y12-5g08.p1k chr07 18 1251 487994 489235 F 1234 95.30 1354 accept 0 ALIGNMENT 927 Y12-5g09.q1k chr09 1143 33 200707 201804 C 1111 96.13 1274 accept 0 ALIGNMENT 933 Y12-5g09.p1k chr09 18 1078 195498 196560 F 1061 97.17 1284 accept 0 ALIGNMENT 960 Y12-5g10.p1k chr04 1219 28 105148 106326 C 1192 95.05 1383 accept 0 ALIGNMENT 931 Y12-5g10.q1k chr04 36 1125 100717 101795 F 1090 96.97 1326 accept 0 ALIGNMENT 890 Y12-5g11.p1k chr01 1032 21 104835 105844 C 1012 96.94 1315 accept 0 ALIGNMENT 954 Y12-5g11.q1k chr01 34 1132 101497 102589 F 1099 97.00 1238 accept 0 ALIGNMENT 621 Y12-5g12.p1k chr11 16 950 67631 68570 F 935 90.27 1405 accept 0 ALIGNMENT 829 Y12-5g12.q1k chr11 1010 34 72120 73095 C 977 96.32 1291 accept 0 ALIGNMENT 376 Y12-5g13.q1k chr08 557 43 3743 4284 C 515 92.04 1258 reject_low 12 ALIGNMENT 54 Y12-5g13.q1k chr05 43 101 571406 571463 F 59 98.31 1258 reject_low 10 ALIGNMENT 731 Y12-5g13.q1k chr09 1017 39 4897 5895 C 979 92.85 1258 ambiguous_tel 1 ALIGNMENT 367 Y12-5g13.q1k chr08 43 557 558078 558619 F 515 91.46 1258 reject_low 17 ALIGNMENT 664 Y12-5g13.p1k chr16 820 24 946631 947426 C 797 95.11 1318 reject_low 13 ALIGNMENT 667 Y12-5g13.p1k chr04 820 24 1530625 1531420 C 797 95.23 1318 ambiguous_tel 3 ALIGNMENT 372 Y12-5g13.q1k chr16 43 557 943624 944166 F 515 91.84 1258 reject_low 13 ALIGNMENT 376 Y12-5g13.q1k chr12 557 43 9546 10087 C 515 92.04 1258 reject_low 15 ALIGNMENT 732 Y12-5g13.q1k chr05 921 135 4601 5386 C 787 98.09 1258 reject_low 9 ALIGNMENT 367 Y12-5g13.q1k chr02 557 43 4212 4753 C 515 91.46 1258 reject_low 11 ALIGNMENT 0 Y12-5g13.q1k chr06 703 556 3051 3050 C 148 0.00 1258 reject_low 18 ALIGNMENT 667 Y12-5g13.p1k chr12 820 24 1076826 1077621 C 797 95.23 1318 ambiguous_tel 4 ALIGNMENT 664 Y12-5g13.p1k chr07 820 24 1089531 1090326 C 797 95.11 1318 ambiguous_tel 8 ALIGNMENT 661 Y12-5g13.p1k chr13 24 820 735 1530 F 797 94.98 1318 reject_low 16 ALIGNMENT 0 Y12-5g13.q1k chr08 558 703 558619 558618 F 146 0.00 1258 reject_low 17 ALIGNMENT 0 Y12-5g13.q1k chr12 703 558 9547 9546 C 146 0.00 1258 reject_low 15 ALIGNMENT 670 Y12-5g13.p1k chr10 24 820 737 1532 F 797 95.36 1318 ambiguous_tel 2 ALIGNMENT 658 Y12-5g13.p1k chr14 24 820 642 1437 F 797 94.86 1318 ambiguous_tel 7 ALIGNMENT 664 Y12-5g13.p1k chr05 820 24 575454 576249 C 797 95.11 1318 reject_low 10 ALIGNMENT 684 Y12-5g13.q1k chr16 1017 43 4418 5411 C 975 91.38 1258 ambiguous_tel 6 ALIGNMENT 661 Y12-5g13.p1k chr12 24 820 751 1546 F 797 94.98 1318 reject_low 14 ALIGNMENT 667 Y12-5g13.p1k chr08 24 820 719 1514 F 797 95.23 1318 reject_low 12 ALIGNMENT 670 Y12-5g13.p1k chr09 24 820 754 1549 F 797 95.36 1318 ambiguous_tel 1 ALIGNMENT 731 Y12-5g13.q1k chr10 1017 39 4880 5878 C 979 92.85 1258 ambiguous_tel 2 ALIGNMENT 0 Y12-5g13.q1k chr16 558 703 944166 944165 F 146 0.00 1258 reject_low 13 ALIGNMENT 667 Y12-5g13.p1k chr12 820 24 1070163 1070958 C 797 95.23 1318 ambiguous_tel 0 ALIGNMENT 0 Y12-5g13.q1k chr08 703 558 3744 3743 C 146 0.00 1258 reject_low 12 ALIGNMENT 376 Y12-5g13.q1k chr13 557 43 3887 4428 C 515 92.04 1258 reject_low 16 ALIGNMENT 664 Y12-5g13.p1k chr16 24 820 551 1346 F 797 95.11 1318 ambiguous_tel 6 ALIGNMENT 673 Y12-5g13.p1k chr02 24 820 554 1349 F 797 95.48 1318 reject_low 11 ALIGNMENT 376 Y12-5g13.q1k chr12 557 43 4011 4552 C 515 92.04 1258 reject_low 14 ALIGNMENT 55 Y12-5g13.q1k chr05 101 39 5400 5461 C 63 96.83 1258 reject_low 9 ALIGNMENT 0 Y12-5g13.q1k chr05 102 134 571464 571476 F 33 0.00 1258 reject_low 10 ALIGNMENT 667 Y12-5g13.p1k chr05 24 820 538 1333 F 797 95.23 1318 reject_low 9 ALIGNMENT 0 Y12-5g13.q1k chr12 703 558 4012 4011 C 146 0.00 1258 reject_low 14 ALIGNMENT 625 Y12-5g13.p1k chr06 65 820 2 756 F 756 94.97 1318 reject_low 18 ALIGNMENT 667 Y12-5g13.p1k chr15 820 24 1089790 1090585 C 797 95.23 1318 ambiguous_tel 5 ALIGNMENT 699 Y12-5g13.q1k chr15 43 1017 1085725 1086718 F 975 91.90 1258 ambiguous_tel 5 ALIGNMENT 0 Y12-5g13.q1k chr02 703 558 4213 4212 C 146 0.00 1258 reject_low 11 ALIGNMENT 699 Y12-5g13.q1k chr04 43 1017 1526560 1527553 F 975 91.90 1258 ambiguous_tel 3 ALIGNMENT 0 Y12-5g13.q1k chr13 703 558 3888 3887 C 146 0.00 1258 reject_low 16 ALIGNMENT 801 Y12-5g13.q1k chr12 39 921 1066205 1067082 F 883 97.62 1258 ambiguous_tel 0 ALIGNMENT 661 Y12-5g13.p1k chr12 24 820 6394 7189 F 797 94.98 1318 reject_low 15 ALIGNMENT 661 Y12-5g13.p1k chr08 820 24 560978 561773 C 797 94.98 1318 reject_low 17 ALIGNMENT 684 Y12-5g13.q1k chr14 1017 43 4509 5502 C 975 91.38 1258 ambiguous_tel 7 ALIGNMENT 684 Y12-5g13.q1k chr07 43 1006 1085466 1086449 F 964 91.60 1258 ambiguous_tel 8 ALIGNMENT 699 Y12-5g13.q1k chr12 43 1017 1072761 1073754 F 975 91.90 1258 ambiguous_tel 4 ALIGNMENT 370 Y12-5g13.q1k chr06 555 43 3050 3590 C 513 91.81 1258 reject_low 18 ALIGNMENT 0 Y12-5g13.q1k chr05 134 102 5387 5399 C 33 0.00 1258 reject_low 9 ALIGNMENT 625 Y12-5g13.q1k chr05 135 1006 571477 572372 F 872 91.63 1258 reject_low 10 ALIGNMENT 800 Y12-5g14.p1k chr16 893 17 400285 401161 C 877 97.95 1350 accept 0 ALIGNMENT 864 Y12-5g14.q1k chr16 30 969 396358 397295 F 940 98.51 1273 accept 0 ALIGNMENT 0 Y12-5g15.q1k chr12 772 62 820144 820143 C 711 0.00 1229 reject_low 1 ALIGNMENT 989 Y12-5g15.p1k chr07 31 1138 553476 554595 F 1108 97.47 1231 accept 0 ALIGNMENT 961 Y12-5g15.q1k chr07 1173 40 556260 557410 C 1134 96.38 1229 accept 0 ALIGNMENT 193 Y12-5g15.q1k chr12 1131 773 819775 820143 C 359 85.52 1229 reject_low 1 ALIGNMENT 0 Y12-5g16.p1k chr02 643 62 801722 801721 C 582 0.00 1332 accept 0 ALIGNMENT 906 Y12-5g16.q1k chr02 30 1064 796686 797722 F 1035 96.71 1304 accept 0 ALIGNMENT 53 Y12-5g16.p1k chr16 1053 665 932167 932561 C 389 72.75 1332 reject_low 1 ALIGNMENT 0 Y12-5g16.p1k chr16 664 62 932562 932561 C 603 0.00 1332 reject_low 1 ALIGNMENT 364 Y12-5g16.p1k chr02 1158 644 801211 801721 C 515 91.26 1332 accept 0 ALIGNMENT 1002 Y12-5g17.q1k chr13 36 1239 825084 826278 F 1204 95.76 1254 accept 0 ALIGNMENT 864 Y12-5g17.p1k chr13 1108 29 828066 829172 C 1080 94.91 1213 accept 0 ALIGNMENT 89 Y12-5g20.p1k chr07 351 261 561658 561748 C 91 100.00 1281 reject_low 7 ALIGNMENT 92 Y12-5g20.p1k chr12 352 259 167934 168027 C 94 100.00 1281 reject_low 2 ALIGNMENT 789 Y12-5g20.q1k chr13 30 925 255537 256434 F 896 97.54 1299 accept 0 ALIGNMENT 90 Y12-5g20.p1k chr01 352 261 182507 182598 C 92 100.00 1281 reject_low 5 ALIGNMENT 0 Y12-5g20.p1k chr04 352 867 437858 437857 F 516 0.00 1281 reject_low 1 ALIGNMENT 0 Y12-5g20.p1k chr02 62 261 227078 227077 F 200 0.00 1281 reject_low 4 ALIGNMENT 0 Y12-5g20.p1k chr07 260 62 561749 561748 C 199 0.00 1281 reject_low 7 ALIGNMENT 83 Y12-5g20.p1k chr04 345 262 980966 981049 C 84 100.00 1281 reject_low 10 ALIGNMENT 0 Y12-5g20.p1k chr09 353 867 248937 248936 F 515 0.00 1281 reject_low 11 ALIGNMENT 0 Y12-5g20.p1k chr04 352 867 1305710 1305709 F 516 0.00 1281 reject_low 9 ALIGNMENT 0 Y12-5g20.p1k chr04 867 346 980967 980966 C 522 0.00 1281 reject_low 10 ALIGNMENT 0 Y12-5g20.p1k chr01 260 62 182599 182598 C 199 0.00 1281 reject_low 5 ALIGNMENT 0 Y12-5g20.p1k chr12 867 353 167935 167934 C 515 0.00 1281 reject_low 2 ALIGNMENT 0 Y12-5g20.p1k chr12 258 62 168028 168027 C 197 0.00 1281 reject_low 2 ALIGNMENT 91 Y12-5g20.p1k chr05 259 351 86601 86693 F 93 100.00 1281 reject_low 3 ALIGNMENT 0 Y12-5g20.p1k chr04 62 261 1305620 1305619 F 200 0.00 1281 reject_low 9 ALIGNMENT 0 Y12-5g20.p1k chr08 867 353 133011 133010 C 515 0.00 1281 reject_low 8 ALIGNMENT 0 Y12-5g20.p1k chr08 260 62 133102 133101 C 199 0.00 1281 reject_low 8 ALIGNMENT 90 Y12-5g20.p1k chr02 262 353 227078 227169 F 92 100.00 1281 reject_low 4 ALIGNMENT 0 Y12-5g20.p1k chr01 867 353 182508 182507 C 515 0.00 1281 reject_low 5 ALIGNMENT 84 Y12-5g20.p1k chr08 352 261 133010 133101 C 92 97.83 1281 reject_low 8 ALIGNMENT 0 Y12-5g20.p1k chr04 261 62 981050 981049 C 200 0.00 1281 reject_low 10 ALIGNMENT 84 Y12-5g20.p1k chr04 262 351 1305620 1305710 F 90 98.89 1281 reject_low 9 ALIGNMENT 52 Y12-5g20.p1k chr09 269 352 248854 248937 F 84 88.10 1281 reject_low 11 ALIGNMENT 0 Y12-5g20.p1k chr10 867 353 523918 523917 C 515 0.00 1281 reject_low 6 ALIGNMENT 89 Y12-5g20.p1k chr04 255 351 437762 437858 F 97 97.94 1281 reject_low 1 ALIGNMENT 0 Y12-5g20.p1k chr05 352 867 86693 86692 F 516 0.00 1281 reject_low 3 ALIGNMENT 0 Y12-5g20.p1k chr02 354 867 227169 227168 F 514 0.00 1281 reject_low 4 ALIGNMENT 0 Y12-5g20.p1k chr09 62 268 248854 248853 F 207 0.00 1281 reject_low 11 ALIGNMENT 1032 Y12-5g20.p1k chr13 1216 22 258281 259480 C 1195 96.57 1281 accept 0 ALIGNMENT 89 Y12-5g20.p1k chr10 352 262 523917 524007 C 91 100.00 1281 reject_low 6 ALIGNMENT 0 Y12-5g20.p1k chr05 62 258 86601 86600 F 197 0.00 1281 reject_low 3 ALIGNMENT 0 Y12-5g20.p1k chr07 867 352 561659 561658 C 516 0.00 1281 reject_low 7 ALIGNMENT 0 Y12-5g20.p1k chr04 62 254 437762 437761 F 193 0.00 1281 reject_low 1 ALIGNMENT 0 Y12-5g20.p1k chr10 261 62 524008 524007 C 200 0.00 1281 reject_low 6 ALIGNMENT 661 Y12-5g21.p1k chr11 18 783 173211 173973 F 766 96.34 1283 accept 0 ALIGNMENT 958 Y12-5g21.q1k chr11 1123 34 176891 177976 C 1090 97.52 1184 accept 0 ALIGNMENT 663 Y12-5g22.p1k chr13 38 791 467735 468488 F 754 97.35 1269 accept 0 ALIGNMENT 628 Y12-5g22.q1k chr13 807 30 469614 470387 C 778 94.34 1305 accept 0 ALIGNMENT 1001 Y12-5g23.q1k chr05 1189 40 345843 346991 C 1150 97.04 1189 accept 0 ALIGNMENT 934 Y12-5g23.p1k chr05 35 1050 342952 343969 F 1016 98.23 1210 accept 0 ALIGNMENT 944 Y12-5g24.q1k chr04 1200 53 55873 57005 C 1148 96.34 1248 accept 0 ALIGNMENT 128 Y12-5g24.p1k chr04 143 321 51228 51415 F 179 92.74 874 accept 0 ALIGNMENT 0 Y12-5g24.q1k chr14 871 84 217183 217182 C 788 0.00 1248 reject_low 1 ALIGNMENT 21 Y12-5g24.q1k chr14 83 51 217182 217214 C 33 100.00 1248 reject_low 1 ALIGNMENT 773 Y12-5h01.q1k chr05 945 30 513695 514608 C 916 95.41 1227 accept 0 ALIGNMENT 532 Y12-5h01.p1k chr05 13 702 510085 510776 F 690 93.48 1385 accept 0 ALIGNMENT 808 Y12-5h02.q1k chr08 31 991 112385 113331 F 961 96.67 1268 accept 0 ALIGNMENT 491 Y12-5h02.p1k chr08 702 19 116843 117527 C 684 91.81 1325 accept 0 ALIGNMENT 1020 Y12-5h03.q1k chr02 37 1190 233668 234815 F 1154 97.31 1197 accept 0 ALIGNMENT 800 Y12-5h03.p1k chr02 1036 19 237304 238326 C 1018 94.99 1326 accept 0 ALIGNMENT 1008 Y12-5h04.q1k chr09 36 1126 48092 49177 F 1091 98.08 1215 accept 0 ALIGNMENT 1034 Y12-5h04.p1k chr09 1240 17 49999 51224 C 1224 95.42 1364 accept 0 ALIGNMENT 967 Y12-5h06.p1k chr14 19 1190 161939 163118 F 1172 95.73 1354 accept 0 ALIGNMENT 1045 Y12-5h06.q1k chr14 1252 35 165147 166361 C 1218 96.31 1265 accept 0 ALIGNMENT 0 Y12-5h07.q1k chr04 522 62 645568 645567 C 461 0.00 1319 reject_low 22 ALIGNMENT 0 Y12-5h07.q1k chr07 825 183 319427 319426 C 643 0.00 1319 reject_low 19 ALIGNMENT 98 Y12-5h07.q1k chr14 38 182 546929 547078 F 145 90.34 1319 reject_low 3 ALIGNMENT 1019 Y12-5h07.p1k chr12 1166 17 660205 661364 C 1150 96.70 1335 accept 0 ALIGNMENT 95 Y12-5h07.q1k chr01 38 182 182804 182953 F 145 89.66 1319 reject_low 8 ALIGNMENT 95 Y12-5h07.q1k chr07 38 182 707389 707538 F 145 89.66 1319 reject_low 10 ALIGNMENT 92 Y12-5h07.q1k chr02 38 182 197908 198057 F 145 88.97 1319 reject_low 15 ALIGNMENT 0 Y12-5h07.q1k chr03 290 62 168905 168904 C 229 0.00 1319 reject_low 1 ALIGNMENT 20 Y12-5h07.q1k chr14 571 527 726637 726680 C 45 86.67 1319 reject_low 23 ALIGNMENT 95 Y12-5h07.q1k chr16 38 182 856732 856881 F 145 89.66 1319 reject_low 12 ALIGNMENT 95 Y12-5h07.q1k chr05 182 38 492434 492583 C 145 89.66 1319 reject_low 9 ALIGNMENT 0 Y12-5h07.q1k chr04 825 183 645236 645235 C 643 0.00 1319 reject_low 20 ALIGNMENT 92 Y12-5h07.q1k chr15 38 183 854464 854613 F 146 89.04 1319 reject_low 13 ALIGNMENT 0 Y12-5h07.q1k chr07 184 825 712550 712549 F 642 0.00 1319 reject_low 5 ALIGNMENT 0 Y12-5h07.q1k chr09 184 825 210645 210644 F 642 0.00 1319 reject_low 6 ALIGNMENT 0 Y12-5h07.q1k chr15 184 825 854613 854612 F 642 0.00 1319 reject_low 13 ALIGNMENT 0 Y12-5h07.q1k chr03 183 825 169063 169062 F 643 0.00 1319 reject_low 21 ALIGNMENT 0 Y12-5h07.q1k chr05 825 186 434625 434624 C 640 0.00 1319 reject_low 2 ALIGNMENT 994 Y12-5h07.q1k chr12 33 1155 657217 658344 F 1123 97.33 1319 accept 0 ALIGNMENT 0 Y12-5h07.q1k chr07 183 825 736327 736326 F 643 0.00 1319 reject_low 17 ALIGNMENT 0 Y12-5h07.q1k chr02 183 825 198057 198056 F 643 0.00 1319 reject_low 15 ALIGNMENT 89 Y12-5h07.q1k chr04 182 38 645235 645384 C 145 88.28 1319 reject_low 20 ALIGNMENT 0 Y12-5h07.q1k chr04 184 825 668432 668431 F 642 0.00 1319 reject_low 4 ALIGNMENT 96 Y12-5h07.q1k chr11 183 38 202289 202439 C 146 89.73 1319 reject_low 7 ALIGNMENT 92 Y12-5h07.q1k chr04 182 38 945949 946098 C 145 88.97 1319 reject_low 16 ALIGNMENT 0 Y12-5h07.q1k chr09 183 825 205556 205555 F 643 0.00 1319 reject_low 11 ALIGNMENT 96 Y12-5h07.q1k chr04 38 183 668282 668432 F 146 89.73 1319 reject_low 4 ALIGNMENT 0 Y12-5h07.q1k chr11 825 184 202290 202289 C 642 0.00 1319 reject_low 7 ALIGNMENT 84 Y12-5h07.q1k chr03 53 182 168929 169063 F 130 89.23 1319 reject_low 21 ALIGNMENT 0 Y12-5h07.q1k chr03 825 423 168772 168771 C 403 0.00 1319 reject_low 1 ALIGNMENT 95 Y12-5h07.q1k chr09 38 182 205407 205556 F 145 89.66 1319 reject_low 11 ALIGNMENT 98 Y12-5h07.q1k chr05 185 38 434624 434776 C 148 89.86 1319 reject_low 2 ALIGNMENT 92 Y12-5h07.q1k chr14 41 182 726429 726575 F 142 89.44 1319 reject_low 18 ALIGNMENT 93 Y12-5h07.q1k chr05 182 40 249929 250076 C 143 89.51 1319 reject_low 14 ALIGNMENT 52 Y12-5h07.q1k chr03 422 291 168771 168904 C 132 82.58 1319 reject_low 1 ALIGNMENT 0 Y12-5h07.q1k chr01 183 825 182953 182952 F 643 0.00 1319 reject_low 8 ALIGNMENT 0 Y12-5h07.q1k chr05 825 183 492435 492434 C 643 0.00 1319 reject_low 9 ALIGNMENT 0 Y12-5h07.q1k chr04 825 572 645520 645519 C 254 0.00 1319 reject_low 22 ALIGNMENT 20 Y12-5h07.q1k chr04 571 523 645519 645567 C 49 85.71 1319 reject_low 22 ALIGNMENT 90 Y12-5h07.q1k chr07 182 40 319426 319573 C 143 88.81 1319 reject_low 19 ALIGNMENT 96 Y12-5h07.q1k chr07 38 183 712400 712550 F 146 89.73 1319 reject_low 5 ALIGNMENT 0 Y12-5h07.q1k chr14 183 825 547078 547077 F 643 0.00 1319 reject_low 3 ALIGNMENT 0 Y12-5h07.q1k chr05 825 183 249930 249929 C 643 0.00 1319 reject_low 14 ALIGNMENT 0 Y12-5h07.q1k chr14 825 572 726638 726637 C 254 0.00 1319 reject_low 23 ALIGNMENT 0 Y12-5h07.q1k chr14 183 825 726575 726574 F 643 0.00 1319 reject_low 18 ALIGNMENT 92 Y12-5h07.q1k chr07 38 182 736178 736327 F 145 88.97 1319 reject_low 17 ALIGNMENT 96 Y12-5h07.q1k chr09 38 183 210495 210645 F 146 89.73 1319 reject_low 6 ALIGNMENT 0 Y12-5h07.q1k chr16 183 825 856881 856880 F 643 0.00 1319 reject_low 12 ALIGNMENT 0 Y12-5h07.q1k chr07 183 825 707538 707537 F 643 0.00 1319 reject_low 10 ALIGNMENT 0 Y12-5h07.q1k chr04 825 183 945950 945949 C 643 0.00 1319 reject_low 16 ALIGNMENT 0 Y12-5h07.q1k chr14 526 62 726681 726680 C 465 0.00 1319 reject_low 23 ALIGNMENT 939 Y12-5h09.q1k chr14 30 1150 753023 754151 F 1121 95.72 1260 accept 0 ALIGNMENT 0 Y12-5h09.q1k chr09 468 416 13063 13106 C 53 0.00 1260 reject_low 2 ALIGNMENT 64 Y12-5h09.q1k chr02 466 867 189947 190348 F 402 72.64 1260 reject_low 4 ALIGNMENT 0 Y12-5h09.q1k chr02 62 84 189593 189592 F 23 0.00 1260 reject_low 4 ALIGNMENT 0 Y12-5h09.q1k chr10 880 319 13164 13163 C 562 0.00 1260 reject_low 3 ALIGNMENT 176 Y12-5h09.q1k chr10 318 30 13163 13451 C 289 87.89 1260 reject_low 3 ALIGNMENT 950 Y12-5h09.p1k chr14 1146 20 756553 757684 C 1127 95.83 1332 accept 0 ALIGNMENT 42 Y12-5h09.q1k chr02 85 318 189593 189826 F 234 73.93 1260 reject_low 4 ALIGNMENT 319 Y12-5h09.q1k chr03 30 1049 301002 302035 F 1020 78.43 1260 reject_low 1 ALIGNMENT 150 Y12-5h09.q1k chr09 1042 469 12488 13062 C 574 76.66 1260 reject_low 2 ALIGNMENT 22 Y12-5h09.q1k chr09 415 390 13107 13132 C 26 96.15 1260 reject_low 2 ALIGNMENT 176 Y12-5h09.q1k chr09 318 30 13180 13468 C 289 87.89 1260 reject_low 2 ALIGNMENT 0 Y12-5h09.q1k chr09 389 319 13133 13179 C 71 0.00 1260 reject_low 2 ALIGNMENT 0 Y12-5h09.q1k chr02 319 465 189827 189946 F 147 0.00 1260 reject_low 4 ALIGNMENT 931 Y12-5h10.q1k chr12 1141 33 143484 144587 C 1109 96.57 1312 accept 0 ALIGNMENT 928 Y12-5h10.p1k chr12 22 1210 140321 141499 F 1189 94.62 1385 accept 0 ALIGNMENT 957 Y12-5h11.q1k chr12 1261 33 1046626 1047847 C 1229 94.96 1266 accept 0 ALIGNMENT 904 Y12-5h11.p1k chr12 19 1090 1043806 1044878 F 1072 96.46 1354 accept 0 ALIGNMENT 0 Y12-5h12.p1k chr08 824 62 216809 216808 C 763 0.00 1388 reject_low 1,3 ALIGNMENT 0 Y12-5h12.q1k chr08 62 398 212158 212157 F 337 0.00 1339 accept 0 ALIGNMENT 0 Y12-5h12.q1k chr08 399 716 216808 216807 F 318 0.00 1339 reject_low 1 ALIGNMENT 0 Y12-5h12.q1k chr08 62 500 214265 214264 F 439 0.00 1339 reject_low 3 ALIGNMENT 0 Y12-5h12.p1k chr08 823 723 214266 214265 C 101 0.00 1388 accept 0 ALIGNMENT 132 Y12-5h12.p1k chr08 1165 825 216474 216808 C 341 82.70 1388 reject_low 1,3 ALIGNMENT 633 Y12-5h12.p1k chr08 722 19 214265 214972 C 704 98.30 1388 accept 0 ALIGNMENT 300 Y12-5h12.q1k chr08 501 868 214265 214629 F 368 96.20 1339 reject_low 3 ALIGNMENT 348 Y12-5h12.q1k chr08 29 398 216439 216808 F 370 99.19 1339 reject_low 1 ALIGNMENT 707 Y12-5h12.p1k chr08 824 19 212158 212974 C 806 97.64 1388 reject_low 2 ALIGNMENT 374 Y12-5h12.q1k chr08 399 868 212158 212631 F 470 95.53 1339 accept 0 ALIGNMENT 970 Y12-5h13.q1k chr10 34 1117 117241 118320 F 1084 97.42 1238 accept 0 ALIGNMENT 0 Y12-5h13.p1k chr10 387 790 121540 121539 F 404 0.00 1285 reject_low 1 ALIGNMENT 0 Y12-5h13.p1k chr11 790 391 141863 141862 C 400 0.00 1285 reject_low 2 ALIGNMENT 0 Y12-5h13.p1k chr11 167 62 142085 142084 C 106 0.00 1285 reject_low 2 ALIGNMENT 0 Y12-5h13.p1k chr10 62 152 121307 121306 F 91 0.00 1285 reject_low 1 ALIGNMENT 90 Y12-5h13.p1k chr11 390 168 141862 142084 C 223 80.27 1285 reject_low 2 ALIGNMENT 910 Y12-5h13.p1k chr10 1070 24 121553 122611 C 1047 97.04 1285 accept 0 ALIGNMENT 152 Y12-5h13.p1k chr10 153 386 121307 121540 F 234 88.46 1285 reject_low 1 ALIGNMENT 904 Y12-5h15.p1k chr05 17 1125 192457 193557 F 1109 94.68 1333 accept 0 ALIGNMENT 988 Y12-5h15.q1k chr05 1215 33 197407 198585 C 1183 96.11 1277 accept 0 ALIGNMENT 0 Y12-5h16.p1k chr02 689 405 780416 780415 C 285 0.00 1409 reject_low 1 ALIGNMENT 0 Y12-5h16.p1k chr02 405 689 464043 464042 F 285 0.00 1409 reject_low 4 ALIGNMENT 0 Y12-5h16.p1k chr11 62 356 381293 381292 F 295 0.00 1409 reject_low 9 ALIGNMENT 24 Y12-5h16.p1k chr15 394 362 235379 235411 C 33 100.00 1409 reject_low 7 ALIGNMENT 0 Y12-5h16.p1k chr02 62 364 464004 464003 F 303 0.00 1409 reject_low 4 ALIGNMENT 0 Y12-5h16.p1k chr04 405 689 923087 923086 F 285 0.00 1409 reject_low 6 ALIGNMENT 0 Y12-5h16.p1k chr11 395 689 381330 381329 F 295 0.00 1409 reject_low 9 ALIGNMENT 22 Y12-5h16.p1k chr11 357 394 381293 381330 F 38 94.74 1409 reject_low 9 ALIGNMENT 0 Y12-5h16.p1k chr05 405 689 83209 83208 F 285 0.00 1409 reject_low 2 ALIGNMENT 0 Y12-5h16.p1k chr06 689 392 160560 160559 C 298 0.00 1409 reject_low 8 ALIGNMENT 0 Y12-5h16.p1k chr04 356 62 747536 747535 C 295 0.00 1409 reject_low 3 ALIGNMENT 32 Y12-5h16.p1k chr02 404 356 780415 780463 C 49 97.96 1409 reject_low 1 ALIGNMENT 0 Y12-5h16.p1k chr06 356 62 160594 160593 C 295 0.00 1409 reject_low 8 ALIGNMENT 0 Y12-5h16.p1k chr02 356 62 780361 780360 C 295 0.00 1409 reject_low 5 ALIGNMENT 837 Y12-5h16.q1k chr09 964 31 172117 173041 C 934 97.97 1345 accept 0 ALIGNMENT 23 Y12-5h16.p1k chr06 391 357 160559 160593 C 35 97.14 1409 reject_low 8 ALIGNMENT 0 Y12-5h16.p1k chr07 355 62 379037 379036 C 294 0.00 1409 reject_low 10 ALIGNMENT 682 Y12-5h16.p1k chr09 15 786 169108 169891 F 772 97.02 1409 accept 0 ALIGNMENT 0 Y12-5h16.p1k chr04 62 358 923042 923041 F 297 0.00 1409 reject_low 6 ALIGNMENT 0 Y12-5h16.p1k chr02 355 62 780464 780463 C 294 0.00 1409 reject_low 1 ALIGNMENT 0 Y12-5h16.p1k chr04 689 402 747492 747491 C 288 0.00 1409 reject_low 3 ALIGNMENT 26 Y12-5h16.p1k chr04 401 357 747491 747535 C 45 95.56 1409 reject_low 3 ALIGNMENT 32 Y12-5h16.p1k chr05 356 404 83161 83209 F 49 97.96 1409 reject_low 2 ALIGNMENT 21 Y12-5h16.p1k chr04 359 404 923042 923087 F 46 91.30 1409 reject_low 6 ALIGNMENT 0 Y12-5h16.p1k chr15 689 395 235380 235379 C 295 0.00 1409 reject_low 7 ALIGNMENT 0 Y12-5h16.p1k chr07 689 386 379008 379007 C 304 0.00 1409 reject_low 10 ALIGNMENT 22 Y12-5h16.p1k chr02 365 404 464004 464043 F 40 95.00 1409 reject_low 4 ALIGNMENT 20 Y12-5h16.p1k chr02 405 357 780312 780360 C 49 87.76 1409 reject_low 5 ALIGNMENT 0 Y12-5h16.p1k chr15 361 62 235412 235411 C 300 0.00 1409 reject_low 7 ALIGNMENT 0 Y12-5h16.p1k chr02 689 406 780313 780312 C 284 0.00 1409 reject_low 5 ALIGNMENT 20 Y12-5h16.p1k chr07 385 356 379007 379036 C 30 96.67 1409 reject_low 10 ALIGNMENT 0 Y12-5h16.p1k chr05 62 355 83161 83160 F 294 0.00 1409 reject_low 2 ALIGNMENT 1019 Y12-5h17.q1k chr09 36 1193 237862 239028 F 1158 96.98 1272 accept 0 ALIGNMENT 942 Y12-5h17.p1k chr09 1123 24 240919 242027 C 1100 95.82 1272 accept 0 ALIGNMENT 996 Y12-5h18.p1k chr15 1267 18 240623 241865 C 1250 94.48 1309 accept 0 ALIGNMENT 956 Y12-5h18.q1k chr15 31 1082 237154 238208 F 1052 97.81 1287 accept 0 ALIGNMENT 1100 Y12-5h19.q1k chr12 1262 28 456518 457767 C 1235 97.09 1280 accept 0 ALIGNMENT 1100 Y12-5h19.q1k chr12 1262 28 465655 466904 C 1235 97.09 1280 accept 1 ALIGNMENT 1020 Y12-5h19.p1k chr12 16 1146 461882 463029 F 1131 97.35 1249 accept 1 ALIGNMENT 1020 Y12-5h19.p1k chr12 16 1146 452745 453892 F 1131 97.35 1249 accept 0 ALIGNMENT 306 Y12-5h20.q1k chr13 811 32 513816 514592 C 780 80.64 1513 accept_chi 1 ALIGNMENT 880 Y12-5h20.p1k chr03 1207 35 248364 249572 C 1173 92.58 1263 accept_chi 0 ALIGNMENT 933 Y12-5h23.p1k chr12 1154 20 466925 468062 C 1135 95.24 1221 accept 1 ALIGNMENT 919 Y12-5h23.q1k chr12 31 1117 463334 464412 F 1087 95.86 1238 accept 1 ALIGNMENT 933 Y12-5h23.p1k chr12 1154 20 457788 458925 C 1135 95.24 1221 accept 0 ALIGNMENT 919 Y12-5h23.q1k chr12 31 1117 454197 455275 F 1087 95.86 1238 accept 0 ALIGNMENT 579 Y12-5h24.p1k chr10 75 867 140063 140860 F 793 92.18 1322 accept 0 ALIGNMENT 972 Y12-5h24.q1k chr10 1141 34 145263 146369 C 1108 96.75 1230 accept 0 ALIGNMENT 0 Y12-5i01.q1k chr07 427 62 823567 823566 C 366 0.00 1308 reject_low 4 ALIGNMENT 77 Y12-5i01.q1k chr11 428 508 307783 307863 F 81 98.77 1308 reject_low 11 ALIGNMENT 0 Y12-5i01.q1k chr11 433 62 379397 379396 C 372 0.00 1308 reject_low 14 ALIGNMENT 76 Y12-5i01.q1k chr10 507 428 378276 378355 C 80 98.75 1308 reject_low 13 ALIGNMENT 0 Y12-5i01.q1k chr15 62 428 663807 663806 F 367 0.00 1308 reject_low 2 ALIGNMENT 0 Y12-5i01.q1k chr13 509 881 372518 372517 F 373 0.00 1308 reject_low 5 ALIGNMENT 0 Y12-5i01.q1k chr15 520 881 663896 663895 F 362 0.00 1308 reject_low 2 ALIGNMENT 0 Y12-5i01.q1k chr15 570 62 664057 664056 C 509 0.00 1308 reject_low 1 ALIGNMENT 0 Y12-5i01.q1k chr10 427 62 378356 378355 C 366 0.00 1308 reject_low 13 ALIGNMENT 25 Y12-5i01.q1k chr15 612 571 664015 664056 C 42 88.10 1308 reject_low 1 ALIGNMENT 0 Y12-5i01.q1k chr13 509 881 586709 586708 F 373 0.00 1308 reject_low 6 ALIGNMENT 0 Y12-5i01.q1k chr11 509 881 307863 307862 F 373 0.00 1308 reject_low 11 ALIGNMENT 0 Y12-5i01.q1k chr07 62 427 73822 73821 F 366 0.00 1308 reject_low 10 ALIGNMENT 0 Y12-5i01.q1k chr07 509 881 412371 412370 F 373 0.00 1308 reject_low 9 ALIGNMENT 80 Y12-5i01.q1k chr13 428 508 372438 372518 F 81 100.00 1308 reject_low 5 ALIGNMENT 0 Y12-5i01.q1k chr13 508 881 420660 420659 F 374 0.00 1308 reject_low 8 ALIGNMENT 80 Y12-5i01.q1k chr13 428 508 586629 586709 F 81 100.00 1308 reject_low 6 ALIGNMENT 0 Y12-5i01.q1k chr11 62 427 307783 307782 F 366 0.00 1308 reject_low 11 ALIGNMENT 0 Y12-5i01.q1k chr07 62 426 412290 412289 F 365 0.00 1308 reject_low 9 ALIGNMENT 79 Y12-5i01.q1k chr13 429 507 420582 420660 F 79 100.00 1308 reject_low 8 ALIGNMENT 0 Y12-5i01.q1k chr12 62 426 687854 687853 F 365 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-5i01.q1k chr13 62 427 586629 586628 F 366 0.00 1308 reject_low 6 ALIGNMENT 77 Y12-5i01.q1k chr07 428 508 73822 73902 F 81 98.77 1308 reject_low 10 ALIGNMENT 78 Y12-5i01.q1k chr08 428 509 85288 85369 F 82 98.78 1308 reject_low 7 ALIGNMENT 0 Y12-5i01.q1k chr08 62 427 85288 85287 F 366 0.00 1308 reject_low 7 ALIGNMENT 0 Y12-5i01.q1k chr12 516 881 687942 687941 F 366 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-5i01.q1k chr05 427 62 438776 438775 C 366 0.00 1308 reject_low 12 ALIGNMENT 80 Y12-5i01.q1k chr07 508 428 823486 823566 C 81 100.00 1308 reject_low 4 ALIGNMENT 0 Y12-5i01.q1k chr07 881 509 823487 823486 C 373 0.00 1308 reject_low 4 ALIGNMENT 0 Y12-5i01.q1k chr07 509 881 73902 73901 F 373 0.00 1308 reject_low 10 ALIGNMENT 82 Y12-5i01.q1k chr12 427 515 687854 687942 F 89 97.75 1308 reject_low 3 ALIGNMENT 0 Y12-5i01.q1k chr15 881 613 664016 664015 C 269 0.00 1308 reject_low 1 ALIGNMENT 0 Y12-5i01.q1k chr05 881 508 438697 438696 C 374 0.00 1308 reject_low 12 ALIGNMENT 0 Y12-5i01.q1k chr08 510 881 85369 85368 F 372 0.00 1308 reject_low 7 ALIGNMENT 0 Y12-5i01.q1k chr10 881 508 378277 378276 C 374 0.00 1308 reject_low 13 ALIGNMENT 74 Y12-5i01.q1k chr11 507 434 379323 379396 C 74 100.00 1308 reject_low 14 ALIGNMENT 834 Y12-5i01.q1k chr05 1091 33 468855 469935 C 1059 94.62 1308 accept 0 ALIGNMENT 0 Y12-5i01.q1k chr11 881 508 379324 379323 C 374 0.00 1308 reject_low 14 ALIGNMENT 75 Y12-5i01.q1k chr07 427 508 412290 412371 F 82 97.56 1308 reject_low 9 ALIGNMENT 1011 Y12-5i01.p1k chr05 20 1283 464403 465663 F 1264 94.62 1284 accept 0 ALIGNMENT 76 Y12-5i01.q1k chr05 507 428 438696 438775 C 80 98.75 1308 reject_low 12 ALIGNMENT 0 Y12-5i01.q1k chr13 62 427 372438 372437 F 366 0.00 1308 reject_low 5 ALIGNMENT 80 Y12-5i01.q1k chr15 429 519 663807 663896 F 91 96.70 1308 reject_low 2 ALIGNMENT 0 Y12-5i01.q1k chr13 62 428 420582 420581 F 367 0.00 1308 reject_low 8 ALIGNMENT 886 Y12-5i02.p1k chr14 1136 16 304722 305837 C 1121 93.93 1341 accept 0 ALIGNMENT 875 Y12-5i02.q1k chr14 31 1062 301559 302594 F 1032 96.12 1365 accept 0 ALIGNMENT 391 Y12-5i03.q1k chr07 33 765 550543 551275 F 733 85.40 1266 reject_low 1 ALIGNMENT 968 Y12-5i03.q1k chr12 33 1151 812215 813322 F 1119 97.05 1266 accept 0 ALIGNMENT 796 Y12-5i03.p1k chr12 1367 446 816281 817214 C 922 96.64 1476 accept 0 ALIGNMENT 0 Y12-5i03.q1k chr07 766 826 551275 551274 F 61 0.00 1266 reject_low 1 ALIGNMENT 942 Y12-5i04.q1k chr16 28 1200 188512 189671 F 1173 95.31 1289 accept 0 ALIGNMENT 833 Y12-5i04.p1k chr16 946 18 192838 193766 C 929 98.17 1377 accept 0 ALIGNMENT 771 Y12-5i06.q1k chr15 12 970 838017 838971 F 959 94.68 1291 accept 0 ALIGNMENT 730 Y12-5i06.p1k chr15 950 18 841701 842635 C 933 94.32 1413 accept 0 ALIGNMENT 908 Y12-5i07.q1k chr13 1031 36 716145 717137 C 996 98.39 1183 accept 0 ALIGNMENT 876 Y12-5i07.p1k chr13 23 1071 712773 713819 F 1049 95.61 1301 accept 0 ALIGNMENT 692 Y12-5i08.q1k chr14 944 34 118687 119601 C 911 92.76 1215 accept 0 ALIGNMENT 987 Y12-5i08.p1k chr14 19 1183 115065 116235 F 1165 95.45 1368 accept 0 ALIGNMENT 1045 Y12-5i09.q1k chr12 38 1218 359109 360296 F 1181 96.78 1221 accept 0 ALIGNMENT 894 Y12-5i09.p1k chr12 1037 23 363378 364406 C 1015 97.64 1243 accept 0 ALIGNMENT 949 Y12-5i10.q1k chr15 35 1182 31702 32845 F 1148 95.21 1273 accept 0 ALIGNMENT 975 Y12-5i10.p1k chr15 1181 24 34526 35692 C 1158 95.85 1336 accept 0 ALIGNMENT 885 Y12-5i11.p1k chr02 21 1038 479498 480528 F 1018 97.25 1231 accept 0 ALIGNMENT 874 Y12-5i11.q1k chr02 1004 40 484374 485336 C 965 98.24 1266 accept 0 ALIGNMENT 1022 Y12-5i12.q1k chr02 32 1246 418567 419780 F 1215 95.88 1246 accept 0 ALIGNMENT 999 Y12-5i12.p1k chr02 1231 24 422586 423801 C 1208 96.27 1326 accept 0 ALIGNMENT 350 Y12-5i13.q1k chr09 34 817 182708 183483 F 784 82.78 1301 accept 0 ALIGNMENT 326 Y12-5i13.p1k chr09 1065 406 185768 186425 C 660 84.39 1345 accept 0 ALIGNMENT 0 Y12-5i14.q1k chr08 169 820 365426 365425 F 652 0.00 1285 reject_low 1 ALIGNMENT 20 Y12-5i14.q1k chr08 142 168 365400 365426 F 27 92.59 1285 reject_low 1 ALIGNMENT 880 Y12-5i14.q1k chr12 33 1042 583527 584530 F 1010 97.03 1285 accept 0 ALIGNMENT 0 Y12-5i14.q1k chr08 62 141 365400 365399 F 80 0.00 1285 reject_low 1 ALIGNMENT 967 Y12-5i14.p1k chr12 1145 21 586201 587322 C 1125 96.09 1350 accept 0 ALIGNMENT 846 Y12-5i15.p1k chr14 25 1091 516460 517526 F 1067 94.66 1267 accept 0 ALIGNMENT 786 Y12-5i15.q1k chr14 880 34 527886 528731 C 847 98.82 1264 accept 0 ALIGNMENT 0 Y12-5i16.q1k chr12 809 883 472582 472581 F 75 0.00 1297 reject_low 5 ALIGNMENT 94 Y12-5i16.q1k chr06 430 323 31622 31729 C 108 98.15 1297 reject_low 4 ALIGNMENT 956 Y12-5i16.p1k chr12 1208 20 454809 456009 C 1189 94.28 1291 reject_low 1 ALIGNMENT 119 Y12-5i16.q1k chr12 690 808 472464 472582 F 119 100.00 1297 reject_low 5 ALIGNMENT 0 Y12-5i16.q1k chr12 62 689 485696 485695 F 628 0.00 1297 reject_low 7 ALIGNMENT 0 Y12-5i16.q1k chr12 62 689 489348 489347 F 628 0.00 1297 reject_low 3 ALIGNMENT 929 Y12-5i16.q1k chr12 35 1131 459020 460130 F 1097 96.72 1297 accept 0 ALIGNMENT 0 Y12-5i16.q1k chr12 809 883 468930 468929 F 75 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-5i16.q1k chr12 62 689 482044 482043 F 628 0.00 1297 reject_low 6 ALIGNMENT 0 Y12-5i16.q1k chr12 62 689 472464 472463 F 628 0.00 1297 reject_low 5 ALIGNMENT 0 Y12-5i16.q1k chr06 883 431 31623 31622 C 453 0.00 1297 reject_low 4 ALIGNMENT 128 Y12-5i16.q1k chr12 690 823 489348 489481 F 134 98.51 1297 reject_low 3 ALIGNMENT 119 Y12-5i16.q1k chr12 690 808 482044 482162 F 119 100.00 1297 reject_low 6 ALIGNMENT 0 Y12-5i16.q1k chr12 809 883 482162 482161 F 75 0.00 1297 reject_low 6 ALIGNMENT 0 Y12-5i16.q1k chr06 322 62 31730 31729 C 261 0.00 1297 reject_low 4 ALIGNMENT 956 Y12-5i16.p1k chr12 1208 20 463946 465146 C 1189 94.28 1291 accept 0 ALIGNMENT 0 Y12-5i16.q1k chr12 824 883 489481 489480 F 60 0.00 1297 reject_low 3 ALIGNMENT 119 Y12-5i16.q1k chr12 690 808 485696 485814 F 119 100.00 1297 reject_low 7 ALIGNMENT 0 Y12-5i16.q1k chr12 809 883 485814 485813 F 75 0.00 1297 reject_low 7 ALIGNMENT 737 Y12-5i16.q1k chr12 35 808 468157 468930 F 774 99.61 1297 reject_low 2 ALIGNMENT 1003 Y12-5i17.p1k chr15 19 1234 185908 187121 F 1216 95.23 1245 accept 0 ALIGNMENT 1023 Y12-5i17.q1k chr15 1191 36 190553 191704 C 1156 97.49 1317 accept 0 ALIGNMENT 941 Y12-5i18.q1k chr13 1157 28 36219 37341 C 1130 95.75 1347 accept 0 ALIGNMENT 1010 Y12-5i18.p1k chr13 20 1235 30853 32077 F 1216 95.81 1304 accept 0 ALIGNMENT 982 Y12-5i19.q1k chr13 1175 36 35627 36770 C 1140 95.96 1225 accept 0 ALIGNMENT 971 Y12-5i19.p1k chr13 22 1070 31157 32212 F 1049 98.47 1203 accept 0 ALIGNMENT 624 Y12-5i20.p1k chr06 406 1163 46161 46922 F 758 95.12 1286 accept 0 ALIGNMENT 725 Y12-5i20.q1k chr06 823 3 49557 50369 C 821 97.20 1283 accept 0 ALIGNMENT 937 Y12-5i21.q1k chr02 1196 36 728280 729437 C 1161 95.61 1201 accept 0 ALIGNMENT 840 Y12-5i21.p1k chr02 33 1050 723689 724717 F 1018 95.19 1215 accept 0 ALIGNMENT 0 Y12-5i22.q1k chr04 62 902 878481 878480 F 841 0.00 1224 reject_low 7 ALIGNMENT 0 Y12-5i22.q1k chr13 902 62 768698 768697 C 841 0.00 1224 reject_low 17 ALIGNMENT 0 Y12-5i22.q1k chr02 823 62 9084 9083 C 762 0.00 1224 reject_low 2 ALIGNMENT 0 Y12-5i22.q1k chr03 902 62 84219 84218 C 841 0.00 1224 reject_low 25 ALIGNMENT 0 Y12-5i22.q1k chr14 902 62 524881 524880 C 841 0.00 1224 reject_low 19 ALIGNMENT 0 Y12-5i22.q1k chr04 902 62 1206845 1206844 C 841 0.00 1224 reject_low 9 ALIGNMENT 0 Y12-5i22.q1k chr15 902 62 970433 970432 C 841 0.00 1224 reject_low 22 ALIGNMENT 0 Y12-5i22.q1k chr10 902 62 538168 538167 C 841 0.00 1224 reject_low 15 ALIGNMENT 0 Y12-5i22.q1k chr03 902 62 84445 84444 C 841 0.00 1224 reject_low 5 ALIGNMENT 0 Y12-5i22.q1k chr04 947 62 520578 520577 C 886 0.00 1224 reject_low 24 ALIGNMENT 32 Y12-5i22.q1k chr03 1043 903 84300 84444 C 141 77.30 1224 reject_low 5 ALIGNMENT 32 Y12-5i22.q1k chr08 903 1043 91945 92089 F 141 77.30 1224 reject_low 13 ALIGNMENT 35 Y12-5i22.q1k chr04 1043 948 520479 520577 C 96 82.29 1224 reject_low 24 ALIGNMENT 0 Y12-5i22.q1k chr02 910 864 9046 9045 C 47 0.00 1224 reject_low 2 ALIGNMENT 27 Y12-5i22.q1k chr03 1005 903 84112 84218 C 103 78.64 1224 reject_low 25 ALIGNMENT 32 Y12-5i22.q1k chr14 903 1043 567843 567987 F 141 77.30 1224 reject_low 21 ALIGNMENT 32 Y12-5i22.q1k chr10 1043 903 538023 538167 C 141 77.30 1224 reject_low 15 ALIGNMENT 32 Y12-5i22.q1k chr02 1043 903 9099 9243 C 141 77.30 1224 reject_low 4 ALIGNMENT 32 Y12-5i22.q1k chr03 903 1043 168778 168922 F 141 77.30 1224 reject_low 6 ALIGNMENT 49 Y12-5i22.q1k chr01 988 1095 138935 139043 F 108 85.19 1224 reject_low 1 ALIGNMENT 991 Y12-5i22.q1k chr10 1224 39 416241 417428 C 1186 96.80 1224 accept 0 ALIGNMENT 32 Y12-5i22.q1k chr15 1043 903 970288 970432 C 141 77.30 1224 reject_low 22 ALIGNMENT 32 Y12-5i22.q1k chr04 1043 903 1352640 1352784 C 141 77.30 1224 reject_low 10 ALIGNMENT 0 Y12-5i22.q1k chr01 62 902 160425 160424 F 841 0.00 1224 reject_low 3 ALIGNMENT 32 Y12-5i22.q1k chr14 1043 903 519170 519314 C 141 77.30 1224 reject_low 18 ALIGNMENT 0 Y12-5i22.q1k chr02 902 62 9244 9243 C 841 0.00 1224 reject_low 4 ALIGNMENT 0 Y12-5i22.q1k chr07 62 902 562030 562029 F 841 0.00 1224 reject_low 12 ALIGNMENT 32 Y12-5i22.q1k chr14 903 1043 562215 562359 F 141 77.30 1224 reject_low 20 ALIGNMENT 32 Y12-5i22.q1k chr07 903 1043 562030 562174 F 141 77.30 1224 reject_low 12 ALIGNMENT 0 Y12-5i22.q1k chr01 62 987 138935 138934 F 926 0.00 1224 reject_low 1 ALIGNMENT 0 Y12-5i22.q1k chr03 62 902 168778 168777 F 841 0.00 1224 reject_low 6 ALIGNMENT 32 Y12-5i22.q1k chr08 903 1043 389362 389506 F 141 77.30 1224 reject_low 14 ALIGNMENT 32 Y12-5i22.q1k chr15 1043 903 975915 976059 C 141 77.30 1224 reject_low 23 ALIGNMENT 32 Y12-5i22.q1k chr04 1043 903 981171 981315 C 141 77.30 1224 reject_low 8 ALIGNMENT 0 Y12-5i22.q1k chr04 902 62 1352785 1352784 C 841 0.00 1224 reject_low 10 ALIGNMENT 32 Y12-5i22.q1k chr12 1043 903 650832 650976 C 141 77.30 1224 reject_low 16 ALIGNMENT 987 Y12-5i22.p1k chr10 19 1221 413355 414562 F 1203 95.18 1263 accept 0 ALIGNMENT 32 Y12-5i22.q1k chr05 903 1043 135789 135933 F 141 77.30 1224 reject_low 11 ALIGNMENT 0 Y12-5i22.q1k chr05 62 902 135789 135788 F 841 0.00 1224 reject_low 11 ALIGNMENT 0 Y12-5i22.q1k chr04 902 62 981316 981315 C 841 0.00 1224 reject_low 8 ALIGNMENT 0 Y12-5i22.q1k chr15 902 62 976060 976059 C 841 0.00 1224 reject_low 23 ALIGNMENT 32 Y12-5i22.q1k chr04 903 1043 878481 878625 F 141 77.30 1224 reject_low 7 ALIGNMENT 32 Y12-5i22.q1k chr01 903 1043 160425 160569 F 141 77.30 1224 reject_low 3 ALIGNMENT 32 Y12-5i22.q1k chr14 1043 903 524736 524880 C 141 77.30 1224 reject_low 19 ALIGNMENT 32 Y12-5i22.q1k chr13 1043 903 768553 768697 C 141 77.30 1224 reject_low 17 ALIGNMENT 32 Y12-5i22.q1k chr04 1043 903 1206700 1206844 C 141 77.30 1224 reject_low 9 ALIGNMENT 0 Y12-5i22.q1k chr08 62 902 91945 91944 F 841 0.00 1224 reject_low 13 ALIGNMENT 0 Y12-5i22.q1k chr08 62 902 389362 389361 F 841 0.00 1224 reject_low 14 ALIGNMENT 0 Y12-5i22.q1k chr14 62 902 562215 562214 F 841 0.00 1224 reject_low 20 ALIGNMENT 0 Y12-5i22.q1k chr12 902 62 650977 650976 C 841 0.00 1224 reject_low 16 ALIGNMENT 0 Y12-5i22.q1k chr14 902 62 519315 519314 C 841 0.00 1224 reject_low 18 ALIGNMENT 0 Y12-5i22.q1k chr14 62 902 567843 567842 F 841 0.00 1224 reject_low 21 ALIGNMENT 25 Y12-5i22.q1k chr02 863 824 9045 9083 C 40 90.00 1224 reject_low 2 ALIGNMENT 354 Y12-5i23.q1k chr12 737 1190 489754 490206 F 454 93.61 1194 reject_low 2 ALIGNMENT 972 Y12-5i23.p1k chr12 1118 17 465093 466197 C 1102 96.64 1204 accept 0 ALIGNMENT 0 Y12-5i23.q1k chr12 62 736 489754 489753 F 675 0.00 1194 reject_low 2 ALIGNMENT 972 Y12-5i23.p1k chr12 1118 17 455956 457060 C 1102 96.64 1204 reject_low 1 ALIGNMENT 0 Y12-5i23.q1k chr12 62 388 451419 451418 F 327 0.00 1194 reject_low 1 ALIGNMENT 917 Y12-5i23.q1k chr12 46 1190 460209 461375 F 1145 94.50 1194 accept 0 ALIGNMENT 643 Y12-5i23.q1k chr12 389 1190 451419 452238 F 802 94.39 1194 reject_low 1 ALIGNMENT 1017 Y12-5i24.q1k chr12 1130 34 452890 453985 C 1097 97.99 1195 reject_low 1 ALIGNMENT 0 Y12-5i24.p1k chr12 212 719 451419 451418 F 508 0.00 1247 reject_low 1 ALIGNMENT 671 Y12-5i24.p1k chr12 205 1209 460013 461047 F 1005 90.85 1247 accept 0 ALIGNMENT 1017 Y12-5i24.q1k chr12 1130 34 462027 463122 C 1097 97.99 1195 accept 0 ALIGNMENT 287 Y12-5i24.p1k chr12 720 1238 451419 451939 F 519 87.28 1247 reject_low 1 ALIGNMENT 813 Y12-5j01.p1k chr09 958 22 358372 359308 C 937 97.12 1377 accept 0 ALIGNMENT 888 Y12-5j01.q1k chr09 25 1063 354634 355666 F 1039 96.63 1412 accept 0 ALIGNMENT 0 Y12-5j02.p1k chr12 249 734 468930 468929 F 486 0.00 1342 reject_low 2 ALIGNMENT 0 Y12-5j02.p1k chr12 62 129 485696 485695 F 68 0.00 1342 reject_low 6 ALIGNMENT 0 Y12-5j02.p1k chr12 264 734 489481 489480 F 471 0.00 1342 reject_low 3 ALIGNMENT 735 Y12-5j02.p1k chr12 18 1087 459562 460667 F 1070 91.03 1342 accept 0 ALIGNMENT 128 Y12-5j02.p1k chr12 130 263 489348 489481 F 134 98.51 1342 reject_low 3 ALIGNMENT 0 Y12-5j02.p1k chr12 62 129 489348 489347 F 68 0.00 1342 reject_low 3 ALIGNMENT 815 Y12-5j02.q1k chr12 958 30 454962 455902 C 929 97.09 1312 reject_low 1 ALIGNMENT 815 Y12-5j02.q1k chr12 958 30 464099 465039 C 929 97.09 1312 accept 0 ALIGNMENT 0 Y12-5j02.p1k chr12 62 129 472464 472463 F 68 0.00 1342 reject_low 4 ALIGNMENT 119 Y12-5j02.p1k chr12 130 248 485696 485814 F 119 100.00 1342 reject_low 6 ALIGNMENT 225 Y12-5j02.p1k chr12 18 248 468699 468930 F 231 99.13 1342 reject_low 2 ALIGNMENT 0 Y12-5j02.p1k chr12 249 734 485814 485813 F 486 0.00 1342 reject_low 6 ALIGNMENT 0 Y12-5j02.p1k chr12 249 734 482162 482161 F 486 0.00 1342 reject_low 5 ALIGNMENT 0 Y12-5j02.p1k chr12 249 734 472582 472581 F 486 0.00 1342 reject_low 4 ALIGNMENT 119 Y12-5j02.p1k chr12 130 248 482044 482162 F 119 100.00 1342 reject_low 5 ALIGNMENT 0 Y12-5j02.p1k chr12 62 129 482044 482043 F 68 0.00 1342 reject_low 5 ALIGNMENT 119 Y12-5j02.p1k chr12 130 248 472464 472582 F 119 100.00 1342 reject_low 4 ALIGNMENT 906 Y12-5j03.p1k chr16 21 1127 144466 145586 F 1107 95.12 1353 accept 0 ALIGNMENT 1030 Y12-5j03.q1k chr16 1253 32 147307 148526 C 1222 95.66 1263 accept 0 ALIGNMENT 830 Y12-5j06.p1k chr05 940 17 161551 162472 C 924 97.51 1404 accept 0 ALIGNMENT 965 Y12-5j06.q1k chr05 34 1224 156935 158112 F 1191 95.80 1289 accept 0 ALIGNMENT 969 Y12-5j07.p1k chr10 17 1130 571115 572221 F 1114 96.68 1376 accept 0 ALIGNMENT 882 Y12-5j07.q1k chr10 1037 30 574494 575499 C 1008 97.02 1194 accept 0 ALIGNMENT 945 Y12-5j08.p1k chr11 21 1117 232000 233104 F 1097 96.54 1358 accept 0 ALIGNMENT 1046 Y12-5j08.q1k chr11 1185 36 235773 236919 C 1150 97.74 1198 accept 0 ALIGNMENT 903 Y12-5j09.q1k chr12 1050 32 464736 465737 C 1019 97.45 1346 manual 1 ALIGNMENT 903 Y12-5j09.q1k chr12 1050 32 455599 456600 C 1019 97.45 1346 manual 0 ALIGNMENT 1073 Y12-5j09.p1k chr12 16 1235 462101 463326 F 1220 96.80 1340 manual 1 ALIGNMENT 1077 Y12-5j09.p1k chr12 16 1248 452964 454204 F 1233 96.67 1340 manual 0 ALIGNMENT 610 Y12-5j10.p1k chr13 823 26 635402 636192 C 798 93.73 1454 accept 0 ALIGNMENT 882 Y12-5j10.q1k chr13 30 1103 632263 633327 F 1074 95.62 1354 accept 0 ALIGNMENT 605 Y12-5j10.q1k chr16 1063 120 97678 98627 C 944 89.62 1354 reject_low 1 ALIGNMENT 0 Y12-5j10.q1k chr16 119 62 98628 98627 C 58 0.00 1354 reject_low 1 ALIGNMENT 971 Y12-5j11.q1k chr16 1177 34 318745 319877 C 1144 96.94 1249 accept 0 ALIGNMENT 855 Y12-5j11.p1k chr16 23 1032 315779 316780 F 1010 96.83 1349 accept 0 ALIGNMENT 1031 Y12-5j12.q1k chr12 1203 22 968067 969250 C 1182 97.12 1222 accept 0 ALIGNMENT 918 Y12-5j12.p1k chr12 14 1154 964537 965664 F 1141 95.35 1353 accept 0 ALIGNMENT 893 Y12-5j13.q1k chr08 1065 27 362706 363735 C 1039 96.63 1250 accept_chi 0 ALIGNMENT 864 Y12-5j13.p1k chr01 25 1084 68978 70033 F 1060 94.91 1322 accept_chi 1 ALIGNMENT 956 Y12-5j15.p1k chr02 14 1125 409878 410991 F 1112 96.67 1340 accept 0 ALIGNMENT 893 Y12-5j15.q1k chr02 1051 27 414591 415619 C 1025 96.49 1283 accept 0 ALIGNMENT 687 Y12-5j17.p1k chr13 17 1123 6787 7880 F 1107 89.25 1318 reject_low 5 ALIGNMENT 707 Y12-5j17.p1k chr02 1214 17 810750 811930 C 1198 88.48 1318 reject_low 2 ALIGNMENT 728 Y12-5j17.p1k chr07 1189 18 1082036 1083186 C 1172 89.08 1318 reject_low 3 ALIGNMENT 727 Y12-5j17.p1k chr14 17 1280 7874 9117 F 1264 87.90 1318 accept_tel 0 ALIGNMENT 705 Y12-5j17.p1k chr10 1125 17 743276 744371 C 1109 89.81 1318 reject_low 4 ALIGNMENT 631 Y12-5j17.p1k chr09 1189 17 437477 438615 C 1173 86.96 1318 reject_low 6 ALIGNMENT 0 Y12-5j17.p1k chr07 62 850 3153 3152 F 789 0.00 1318 reject_low 9 ALIGNMENT 930 Y12-5j17.q1k chr14 1091 27 11056 12119 C 1065 96.43 1369 accept_tel 0 ALIGNMENT 612 Y12-5j17.p1k chr08 17 1051 5943 6969 F 1035 88.02 1318 reject_low 8 ALIGNMENT 621 Y12-5j17.p1k chr04 17 1125 1350 2440 F 1109 87.20 1318 reject_low 7 ALIGNMENT 833 Y12-5j17.p1k chr06 17 1235 5973 7170 F 1219 91.22 1318 reject_low 1 ALIGNMENT 36 Y12-5j17.p1k chr07 851 945 3153 3247 F 95 78.95 1318 reject_low 9 ALIGNMENT 921 Y12-5j17.q1k chr06 1091 27 9149 10212 C 1065 96.15 1369 reject_low 1 ALIGNMENT 872 Y12-5j18.p1k chr15 1006 28 934108 935083 C 979 97.34 1303 accept 0 ALIGNMENT 924 Y12-5j18.q1k chr15 30 1147 930765 931868 F 1118 95.35 1358 accept 0 ALIGNMENT 176 Y12-5j19.q1k chr09 53 578 237868 238381 F 526 79.66 1442 accept 0 ALIGNMENT 1016 Y12-5j20.q1k chr10 1266 33 197748 198996 C 1234 96.03 1275 ambiguous_trans 1 ALIGNMENT 1004 Y12-5j20.q1k chr16 33 1266 441580 442825 F 1234 95.62 1275 ambiguous_trans 2 ALIGNMENT 985 Y12-5j20.p1k chr04 1171 19 496172 497338 C 1153 96.44 1269 accept 0 ALIGNMENT 990 Y12-5j20.q1k chr08 1214 33 85874 87064 C 1182 96.45 1275 ambiguous_trans 3 ALIGNMENT 29 Y12-5j22.q1k chr08 82 37 365360 365405 C 46 89.13 1193 reject_low 27 ALIGNMENT 0 Y12-5j22.p1k chr04 487 62 434699 434698 C 426 0.00 1244 reject_low 4 ALIGNMENT 34 Y12-5j22.q1k chr13 35 95 354159 354219 F 61 86.89 1193 reject_low 11 ALIGNMENT 0 Y12-5j22.q1k chr07 880 100 112936 112935 C 781 0.00 1193 reject_low 34 ALIGNMENT 0 Y12-5j22.q1k chr15 880 119 427927 427926 C 762 0.00 1193 reject_low 7 ALIGNMENT 0 Y12-5j22.p1k chr10 851 117 59696 59695 C 735 0.00 1244 reject_low 32 ALIGNMENT 40 Y12-5j22.q1k chr07 52 116 70163 70227 F 65 89.23 1193 reject_low 9 ALIGNMENT 0 Y12-5j22.q1k chr13 96 880 354219 354218 F 785 0.00 1193 reject_low 11 ALIGNMENT 38 Y12-5j22.p1k chr14 166 35 519359 519490 C 132 78.79 1244 reject_low 20 ALIGNMENT 0 Y12-5j22.p1k chr16 851 172 56646 56645 C 680 0.00 1244 reject_low 10 ALIGNMENT 41 Y12-5j22.p1k chr13 171 62 202112 202221 C 110 81.82 1244 reject_low 23 ALIGNMENT 44 Y12-5j22.p1k chr16 171 35 56645 56781 C 137 80.29 1244 reject_low 10 ALIGNMENT 0 Y12-5j22.p1k chr07 851 174 402149 402148 C 678 0.00 1244 reject_low 14 ALIGNMENT 0 Y12-5j22.p1k chr14 851 167 519360 519359 C 685 0.00 1244 reject_low 20 ALIGNMENT 35 Y12-5j22.p1k chr11 588 488 313425 313525 C 101 82.18 1244 reject_low 5 ALIGNMENT 26 Y12-5j22.q1k chr05 97 69 308999 309027 C 29 100.00 1193 reject_low 33 ALIGNMENT 43 Y12-5j22.p1k chr07 171 49 876140 876263 C 123 81.30 1244 reject_low 21 ALIGNMENT 42 Y12-5j22.q1k chr15 118 37 427974 428055 C 82 85.37 1193 reject_low 8 ALIGNMENT 49 Y12-5j22.q1k chr15 118 36 427926 428008 C 83 87.95 1193 reject_low 7 ALIGNMENT 45 Y12-5j22.p1k chr13 43 171 378299 378427 F 129 81.40 1244 reject_low 16 ALIGNMENT 35 Y12-5j22.q1k chr16 107 36 187342 187413 C 72 84.72 1193 reject_low 19 ALIGNMENT 0 Y12-5j22.q1k chr08 880 83 365361 365360 C 798 0.00 1193 reject_low 27 ALIGNMENT 0 Y12-5j22.p1k chr04 176 851 434566 434565 F 676 0.00 1244 reject_low 13 ALIGNMENT 0 Y12-5j22.q1k chr08 880 117 252897 252896 C 764 0.00 1193 reject_low 22 ALIGNMENT 38 Y12-5j22.p1k chr04 588 488 434598 434698 C 101 83.17 1244 reject_low 4 ALIGNMENT 0 Y12-5j22.q1k chr07 117 880 70227 70226 F 764 0.00 1193 reject_low 9 ALIGNMENT 0 Y12-5j22.p1k chr07 851 185 793406 793405 C 667 0.00 1244 reject_low 28 ALIGNMENT 23 Y12-5j22.q1k chr07 99 63 112935 112971 C 37 89.19 1193 reject_low 34 ALIGNMENT 0 Y12-5j22.q1k chr15 880 119 427975 427974 C 762 0.00 1193 reject_low 8 ALIGNMENT 48 Y12-5j22.p1k chr11 49 209 313268 313429 F 161 80.12 1244 reject_low 6 ALIGNMENT 24 Y12-5j22.p1k chr02 377 424 36121 36167 F 48 85.42 1244 reject_low 2 ALIGNMENT 0 Y12-5j22.q1k chr16 880 108 187343 187342 C 773 0.00 1193 reject_low 19 ALIGNMENT 0 Y12-5j22.p1k chr11 487 62 313526 313525 C 426 0.00 1244 reject_low 5 ALIGNMENT 26 Y12-5j22.p1k chr07 184 88 793405 793500 C 97 78.35 1244 reject_low 28 ALIGNMENT 32 Y12-5j22.q1k chr08 120 61 252919 252978 C 60 86.67 1193 reject_low 12 ALIGNMENT 0 Y12-5j22.p1k chr04 851 589 434599 434598 C 263 0.00 1244 reject_low 4 ALIGNMENT 0 Y12-5j22.p1k chr02 425 851 36167 36166 F 427 0.00 1244 reject_low 2 ALIGNMENT 35 Y12-5j22.p1k chr04 166 35 1206889 1207020 C 132 78.03 1244 reject_low 24 ALIGNMENT 0 Y12-5j22.p1k chr05 851 166 312311 312310 C 686 0.00 1244 reject_low 31 ALIGNMENT 0 Y12-5j22.p1k chr07 87 62 793501 793500 C 26 0.00 1244 reject_low 28 ALIGNMENT 0 Y12-5j22.q1k chr08 880 121 252920 252919 C 760 0.00 1193 reject_low 12 ALIGNMENT 0 Y12-5j22.p1k chr16 851 172 844603 844602 C 680 0.00 1244 reject_low 18 ALIGNMENT 52 Y12-5j22.p1k chr15 577 455 664183 664305 C 123 82.93 1244 reject_low 1 ALIGNMENT 0 Y12-5j22.p1k chr04 851 167 1206890 1206889 C 685 0.00 1244 reject_low 24 ALIGNMENT 31 Y12-5j22.p1k chr10 116 49 59695 59762 C 68 85.29 1244 reject_low 32 ALIGNMENT 46 Y12-5j22.p1k chr04 49 175 434441 434566 F 127 81.89 1244 reject_low 13 ALIGNMENT 30 Y12-5j22.q1k chr08 116 37 252896 252975 C 80 81.25 1193 reject_low 22 ALIGNMENT 30 Y12-5j22.q1k chr13 68 107 209871 209910 F 40 95.00 1193 reject_low 30 ALIGNMENT 0 Y12-5j22.p1k chr15 851 172 117897 117896 C 680 0.00 1244 reject_low 17 ALIGNMENT 39 Y12-5j22.p1k chr07 173 33 402148 402288 C 141 78.72 1244 reject_low 14 ALIGNMENT 35 Y12-5j22.q1k chr04 104 52 810720 810772 C 53 90.57 1193 reject_low 25 ALIGNMENT 0 Y12-5j22.p1k chr02 62 376 36121 36120 F 315 0.00 1244 reject_low 2 ALIGNMENT 0 Y12-5j22.p1k chr11 851 174 163029 163028 C 678 0.00 1244 reject_low 26 ALIGNMENT 0 Y12-5j22.p1k chr08 376 62 85633 85632 C 315 0.00 1244 reject_low 3 ALIGNMENT 0 Y12-5j22.p1k chr07 172 851 823123 823122 F 680 0.00 1244 reject_low 15 ALIGNMENT 0 Y12-5j22.p1k chr13 172 851 378427 378426 F 680 0.00 1244 reject_low 16 ALIGNMENT 0 Y12-5j22.q1k chr05 880 98 309000 308999 C 783 0.00 1193 reject_low 33 ALIGNMENT 0 Y12-5j22.p1k chr11 210 851 313429 313428 F 642 0.00 1244 reject_low 6 ALIGNMENT 24 Y12-5j22.p1k chr08 424 377 85586 85632 C 48 85.42 1244 reject_low 3 ALIGNMENT 0 Y12-5j22.p1k chr13 851 172 202113 202112 C 680 0.00 1244 reject_low 23 ALIGNMENT 0 Y12-5j22.q1k chr07 75 880 70227 70226 F 806 0.00 1193 reject_low 29 ALIGNMENT 0 Y12-5j22.p1k chr08 851 425 85587 85586 C 427 0.00 1244 reject_low 3 ALIGNMENT 36 Y12-5j22.p1k chr11 173 49 163028 163153 C 125 79.20 1244 reject_low 26 ALIGNMENT 45 Y12-5j22.p1k chr15 171 43 117896 118024 C 129 81.40 1244 reject_low 17 ALIGNMENT 844 Y12-5j22.q1k chr08 1086 37 364368 365441 C 1050 95.71 1193 accept 0 ALIGNMENT 0 Y12-5j22.p1k chr07 851 172 876141 876140 C 680 0.00 1244 reject_low 21 ALIGNMENT 0 Y12-5j22.p1k chr15 454 62 664306 664305 C 393 0.00 1244 reject_low 1 ALIGNMENT 0 Y12-5j22.q1k chr04 880 105 810721 810720 C 776 0.00 1193 reject_low 25 ALIGNMENT 33 Y12-5j22.p1k chr05 165 60 312310 312415 C 106 79.25 1244 reject_low 31 ALIGNMENT 45 Y12-5j22.p1k chr16 171 43 844602 844730 C 129 81.40 1244 reject_low 18 ALIGNMENT 0 Y12-5j22.p1k chr15 851 578 664184 664183 C 274 0.00 1244 reject_low 1 ALIGNMENT 0 Y12-5j22.p1k chr11 851 589 313426 313425 C 263 0.00 1244 reject_low 5 ALIGNMENT 45 Y12-5j22.p1k chr07 43 171 822995 823123 F 129 81.40 1244 reject_low 15 ALIGNMENT 920 Y12-5j22.p1k chr08 31 1220 358678 359877 F 1190 94.54 1244 accept 0 ALIGNMENT 0 Y12-5j22.q1k chr13 108 880 209910 209909 F 773 0.00 1193 reject_low 30 ALIGNMENT 25 Y12-5j22.q1k chr07 36 74 70189 70227 F 39 89.74 1193 reject_low 29 ALIGNMENT 803 Y12-5j24.q1k chr13 30 926 85809 86706 F 897 97.32 1242 accept 0 ALIGNMENT 876 Y12-5j24.p1k chr13 1256 38 88699 89902 C 1219 92.86 1257 accept 0 ALIGNMENT 932 Y12-5k01.q1k chr14 37 1140 724621 725725 F 1104 96.20 1140 accept 0 ALIGNMENT 847 Y12-5k01.p1k chr14 1218 53 729734 730911 C 1166 92.71 1250 accept 0 ALIGNMENT 769 Y12-5k02.q1k chr12 1 892 895425 896309 F 892 97.20 1242 accept 0 ALIGNMENT 0 Y12-5k03.q1k chr10 285 862 355361 355360 F 578 0.00 1218 reject_low 8 ALIGNMENT 0 Y12-5k03.q1k chr02 285 862 405943 405942 F 578 0.00 1218 reject_low 6 ALIGNMENT 74 Y12-5k03.q1k chr10 284 211 374422 374495 C 74 100.00 1218 reject_low 9 ALIGNMENT 822 Y12-5k03.q1k chr07 197 1206 736329 737347 F 1010 95.05 1218|2,0 accept 0 ALIGNMENT 0 Y12-5k03.q1k chr10 210 62 374496 374495 C 149 0.00 1218 reject_low 9 ALIGNMENT 0 Y12-5k03.q1k chr05 293 862 138745 138744 F 570 0.00 1218 reject_low 3 ALIGNMENT 0 Y12-5k03.q1k chr07 299 862 405558 405557 F 564 0.00 1218 reject_low 1 ALIGNMENT 0 Y12-5k03.q1k chr13 210 62 747965 747964 C 149 0.00 1218 reject_low 5 ALIGNMENT 0 Y12-5k03.q1k chr04 285 862 568950 568949 F 578 0.00 1218 reject_low 7 ALIGNMENT 77 Y12-5k03.q1k chr05 213 292 138666 138745 F 80 98.75 1218 reject_low 3 ALIGNMENT 0 Y12-5k03.q1k chr07 199 198 735985 736330 F 0 0.00 1218 accept 0 ALIGNMENT 137 Y12-5k03.q1k chr07 36 200 735822 735986 F 165 95.76 1218|0,2 accept 0 ALIGNMENT 0 Y12-5k03.q1k chr05 62 212 138666 138665 F 151 0.00 1218 reject_low 3 ALIGNMENT 0 Y12-5k03.q1k chr13 210 62 131899 131898 C 149 0.00 1218 reject_low 10 ALIGNMENT 0 Y12-5k03.q1k chr11 210 62 162566 162565 C 149 0.00 1218 reject_low 4 ALIGNMENT 74 Y12-5k03.q1k chr04 211 284 568877 568950 F 74 100.00 1218 reject_low 7 ALIGNMENT 0 Y12-5k03.q1k chr11 862 291 162487 162486 C 572 0.00 1218 reject_low 4 ALIGNMENT 0 Y12-5k03.q1k chr04 62 210 568877 568876 F 149 0.00 1218 reject_low 7 ALIGNMENT 984 Y12-5k03.p1k chr07 1215 30 739657 740854 C 1186 95.36 1260 accept 0 ALIGNMENT 74 Y12-5k03.q1k chr10 211 284 355288 355361 F 74 100.00 1218 reject_low 8 ALIGNMENT 0 Y12-5k03.q1k chr02 62 210 405870 405869 F 149 0.00 1218 reject_low 6 ALIGNMENT 74 Y12-5k03.q1k chr02 211 284 405870 405943 F 74 100.00 1218 reject_low 6 ALIGNMENT 0 Y12-5k03.q1k chr13 862 285 131826 131825 C 578 0.00 1218 reject_low 10 ALIGNMENT 0 Y12-5k03.q1k chr07 62 210 405471 405470 F 149 0.00 1218 reject_low 1 ALIGNMENT 77 Y12-5k03.q1k chr11 290 211 162486 162565 C 80 98.75 1218 reject_low 4 ALIGNMENT 74 Y12-5k03.q1k chr13 284 211 131825 131898 C 74 100.00 1218 reject_low 10 ALIGNMENT 77 Y12-5k03.q1k chr13 290 211 747885 747964 C 80 98.75 1218 reject_low 5 ALIGNMENT 76 Y12-5k03.q1k chr07 299 211 828712 828801 C 89 95.51 1218 reject_low 2 ALIGNMENT 0 Y12-5k03.q1k chr10 62 210 355288 355287 F 149 0.00 1218 reject_low 8 ALIGNMENT 0 Y12-5k03.q1k chr10 862 285 374423 374422 C 578 0.00 1218 reject_low 9 ALIGNMENT 0 Y12-5k03.q1k chr13 862 291 747886 747885 C 572 0.00 1218 reject_low 5 ALIGNMENT 0 Y12-5k03.q1k chr07 210 62 828802 828801 C 149 0.00 1218 reject_low 2 ALIGNMENT 79 Y12-5k03.q1k chr07 211 298 405471 405558 F 88 96.59 1218 reject_low 1 ALIGNMENT 0 Y12-5k03.q1k chr07 862 300 828713 828712 C 563 0.00 1218 reject_low 2 ALIGNMENT 71 Y12-5k06.q1k chr08 194 337 528102 528245 F 144 83.33 1253 reject_low 1 ALIGNMENT 0 Y12-5k06.q1k chr08 723 869 528621 528620 F 147 0.00 1253 reject_low 1 ALIGNMENT 57 Y12-5k06.q1k chr08 571 722 528470 528621 F 152 80.26 1253 reject_low 1 ALIGNMENT 0 Y12-5k06.q1k chr08 338 570 528246 528469 F 233 0.00 1253 reject_low 1 ALIGNMENT 914 Y12-5k06.p1k chr11 1176 19 651685 652840 C 1158 95.51 1355 accept 0 ALIGNMENT 0 Y12-5k06.q1k chr08 62 193 528102 528101 F 132 0.00 1253 reject_low 1 ALIGNMENT 956 Y12-5k06.q1k chr11 31 1249 648813 650015 F 1219 94.75 1253 accept 0 ALIGNMENT 985 Y12-5k07.q1k chr11 1172 34 573757 574880 C 1139 97.10 1281 accept 0 ALIGNMENT 941 Y12-5k07.p1k chr11 25 1128 570386 571488 F 1104 96.56 1277 accept 0 ALIGNMENT 32 Y12-5k08.q1k chr03 356 291 169752 169817 C 66 84.85 1296 reject_low 1 ALIGNMENT 999 Y12-5k08.q1k chr13 1296 31 502300 503575 C 1266 94.71 1296 accept 0 ALIGNMENT 0 Y12-5k08.q1k chr03 290 62 169818 169817 C 229 0.00 1296 reject_low 1 ALIGNMENT 949 Y12-5k08.p1k chr13 15 1107 497104 498199 F 1093 96.25 1345 accept 0 ALIGNMENT 0 Y12-5k08.q1k chr03 869 357 169753 169752 C 513 0.00 1296 reject_low 1 ALIGNMENT 954 Y12-5k09.p1k chr08 17 1189 60682 61851 F 1173 95.57 1280 accept 0 ALIGNMENT 921 Y12-5k09.q1k chr08 1102 35 64534 65596 C 1068 96.35 1318 accept 0 ALIGNMENT 759 Y12-5k10.p1k chr04 935 21 1291802 1292717 C 915 95.52 1300 accept 0 ALIGNMENT 592 Y12-5k10.q1k chr04 35 875 1288721 1289550 F 841 91.56 1349 accept 0 ALIGNMENT 552 Y12-5k11.q1k chr14 780 31 235358 236099 C 750 93.87 1313 accept 0 ALIGNMENT 941 Y12-5k11.p1k chr14 23 1134 231518 232637 F 1112 96.22 1259 accept 0 ALIGNMENT 80 Y12-5k12.q1k chr05 498 407 443187 443278 C 92 95.65 1283 reject_low 1 ALIGNMENT 961 Y12-5k12.q1k chr07 36 1215 738747 739942 F 1180 94.58 1283 accept 0 ALIGNMENT 0 Y12-5k12.q1k chr02 62 412 197496 197495 F 351 0.00 1283 reject_low 8 ALIGNMENT 0 Y12-5k12.q1k chr05 412 62 551355 551354 C 351 0.00 1283 reject_low 10 ALIGNMENT 0 Y12-5k12.q1k chr04 408 62 668081 668080 C 347 0.00 1283 reject_low 2 ALIGNMENT 0 Y12-5k12.q1k chr09 413 62 183511 183510 C 352 0.00 1283 reject_low 11 ALIGNMENT 0 Y12-5k12.q1k chr16 62 413 819525 819524 F 352 0.00 1283 reject_low 5 ALIGNMENT 0 Y12-5k12.q1k chr16 935 496 880285 880284 C 440 0.00 1283 reject_low 3 ALIGNMENT 0 Y12-5k12.q1k chr09 62 413 210662 210661 F 352 0.00 1283 reject_low 12 ALIGNMENT 0 Y12-5k12.q1k chr14 935 498 569860 569859 C 438 0.00 1283 reject_low 6 ALIGNMENT 0 Y12-5k12.q1k chr16 497 935 819607 819606 F 439 0.00 1283 reject_low 5 ALIGNMENT 0 Y12-5k12.q1k chr16 413 62 880366 880365 C 352 0.00 1283 reject_low 3 ALIGNMENT 79 Y12-5k12.q1k chr14 414 497 602313 602395 F 84 98.81 1283 reject_low 7 ALIGNMENT 0 Y12-5k12.q1k chr12 935 498 1052059 1052058 C 438 0.00 1283 reject_low 9 ALIGNMENT 77 Y12-5k12.q1k chr09 414 496 210662 210744 F 83 97.59 1283 reject_low 12 ALIGNMENT 939 Y12-5k12.p1k chr07 1180 22 741757 742916 C 1159 93.10 1359 accept 0 ALIGNMENT 0 Y12-5k12.q1k chr05 935 496 551273 551272 C 440 0.00 1283 reject_low 10 ALIGNMENT 0 Y12-5k12.q1k chr12 497 935 734886 734885 F 439 0.00 1283 reject_low 4 ALIGNMENT 0 Y12-5k12.q1k chr14 413 62 569942 569941 C 352 0.00 1283 reject_low 6 ALIGNMENT 77 Y12-5k12.q1k chr12 497 414 1052058 1052141 C 84 97.62 1283 reject_low 9 ALIGNMENT 0 Y12-5k12.q1k chr12 62 413 734804 734803 F 352 0.00 1283 reject_low 4 ALIGNMENT 0 Y12-5k12.q1k chr05 935 499 443188 443187 C 437 0.00 1283 reject_low 1 ALIGNMENT 79 Y12-5k12.q1k chr14 497 414 569859 569941 C 84 98.81 1283 reject_low 6 ALIGNMENT 0 Y12-5k12.q1k chr14 62 413 602313 602312 F 352 0.00 1283 reject_low 7 ALIGNMENT 77 Y12-5k12.q1k chr09 496 414 183428 183510 C 83 97.59 1283 reject_low 11 ALIGNMENT 0 Y12-5k12.q1k chr05 406 62 443279 443278 C 345 0.00 1283 reject_low 1 ALIGNMENT 0 Y12-5k12.q1k chr04 935 498 667993 667992 C 438 0.00 1283 reject_low 2 ALIGNMENT 0 Y12-5k12.q1k chr14 498 935 602395 602394 F 438 0.00 1283 reject_low 7 ALIGNMENT 80 Y12-5k12.q1k chr04 497 409 667992 668080 C 89 96.63 1283 reject_low 2 ALIGNMENT 80 Y12-5k12.q1k chr12 414 496 734804 734886 F 83 98.80 1283 reject_low 4 ALIGNMENT 79 Y12-5k12.q1k chr02 413 494 197496 197577 F 82 98.78 1283 reject_low 8 ALIGNMENT 0 Y12-5k12.q1k chr02 495 935 197577 197576 F 441 0.00 1283 reject_low 8 ALIGNMENT 0 Y12-5k12.q1k chr09 935 497 183429 183428 C 439 0.00 1283 reject_low 11 ALIGNMENT 0 Y12-5k12.q1k chr09 497 935 210744 210743 F 439 0.00 1283 reject_low 12 ALIGNMENT 0 Y12-5k12.q1k chr12 413 62 1052142 1052141 C 352 0.00 1283 reject_low 9 ALIGNMENT 82 Y12-5k12.q1k chr16 495 414 880284 880365 C 82 100.00 1283 reject_low 3 ALIGNMENT 80 Y12-5k12.q1k chr16 414 496 819525 819607 F 83 98.80 1283 reject_low 5 ALIGNMENT 77 Y12-5k12.q1k chr05 495 413 551272 551354 C 83 97.59 1283 reject_low 10 ALIGNMENT 834 Y12-5k13.p1k chr16 980 26 887125 888075 C 955 96.65 1284 accept 0 ALIGNMENT 839 Y12-5k13.q1k chr16 37 1057 883178 884182 F 1021 95.89 1281 accept 0 ALIGNMENT 991 Y12-5k14.p1k chr12 26 1201 526763 527954 F 1176 95.92 1308 accept_chi 0 ALIGNMENT 935 Y12-5k14.q1k chr10 1125 25 131351 132440 C 1101 96.64 1306 accept_chi 1 ALIGNMENT 939 Y12-5k15.q1k chr08 1147 32 202866 203970 C 1116 96.15 1195 accept 0 ALIGNMENT 1010 Y12-5k15.p1k chr08 20 1207 198446 199635 F 1188 96.04 1267 accept 0 ALIGNMENT 776 Y12-5k16.q1k chr11 31 903 252033 252903 F 873 97.71 1338 accept 0 ALIGNMENT 951 Y12-5k16.p1k chr11 1088 20 254980 256041 C 1069 97.94 1356 accept 0 ALIGNMENT 916 Y12-5k17.p1k chr06 1052 18 60290 61325 C 1035 97.00 1250 accept 0 ALIGNMENT 412 Y12-5k17.q1k chr06 31 475 57585 58029 F 445 99.78 1289 accept 0 ALIGNMENT 0 Y12-5k18.q1k chr02 766 62 260224 260223 C 705 0.00 1223 ambiguous_trans 16 ALIGNMENT 89 Y12-5k18.q1k chr16 767 1055 855897 856193 F 289 78.55 1223 reject_low 25 ALIGNMENT 0 Y12-5k18.q1k chr13 766 587 184818 185009 C 180 0.00 1223 reject_low 23 ALIGNMENT 0 Y12-5k18.q1k chr16 766 62 57105 57104 C 705 0.00 1223 ambiguous_trans 20 ALIGNMENT 928 Y12-5k18.q1k chr04 1105 35 981459 982544 C 1071 97.01 1223 ambiguous_trans 9 ALIGNMENT 1061 Y12-5k18.p1k chr09 1249 26 326657 327887 C 1224 96.73 1301 accept 0 ALIGNMENT 89 Y12-5k18.q1k chr16 1098 767 56759 57104 C 332 77.71 1223 ambiguous_trans 20 ALIGNMENT 0 Y12-5k18.q1k chr16 530 62 845310 845309 C 469 0.00 1223 reject_low 24 ALIGNMENT 928 Y12-5k18.q1k chr04 35 1113 518264 519358 F 1079 96.85 1223 ambiguous_trans 7 ALIGNMENT 21 Y12-5k18.q1k chr13 586 531 185010 185065 C 56 80.36 1223 reject_low 23 ALIGNMENT 909 Y12-5k18.q1k chr15 35 1136 708644 709766 F 1102 95.83 1223 ambiguous_trans 1 ALIGNMENT 932 Y12-5k18.q1k chr07 35 1111 573325 574417 F 1077 97.03 1223 ambiguous_trans 8 ALIGNMENT 0 Y12-5k18.q1k chr16 587 766 855705 855896 F 180 0.00 1223 reject_low 25 ALIGNMENT 65 Y12-5k18.q1k chr16 767 1098 809909 810254 F 332 75.60 1223 ambiguous_trans 21 ALIGNMENT 956 Y12-5k18.q1k chr03 1111 35 85097 86189 C 1077 97.77 1223 ambiguous_trans 2 ALIGNMENT 953 Y12-5k18.q1k chr06 1111 35 138195 139287 C 1077 97.68 1223 ambiguous_trans 3 ALIGNMENT 0 Y12-5k18.q1k chr16 62 530 855649 855648 F 469 0.00 1223 reject_low 25 ALIGNMENT 935 Y12-5k18.q1k chr14 35 1111 566613 567706 F 1077 97.12 1223 ambiguous_trans 6 ALIGNMENT 904 Y12-5k18.q1k chr12 35 1105 980317 981402 F 1071 96.27 1223 ambiguous_trans 12 ALIGNMENT 92 Y12-5k18.q1k chr04 767 1055 650765 651061 F 289 78.89 1223 ambiguous_trans 17 ALIGNMENT 21 Y12-5k18.q1k chr16 586 531 845254 845309 C 56 80.36 1223 reject_low 24 ALIGNMENT 904 Y12-5k18.q1k chr04 1105 35 872110 873195 C 1071 96.27 1223 ambiguous_trans 11 ALIGNMENT 92 Y12-5k18.q1k chr02 1055 767 259927 260223 C 289 78.55 1223 ambiguous_trans 16 ALIGNMENT 21 Y12-5k18.q1k chr16 531 586 855649 855704 F 56 80.36 1223 reject_low 25 ALIGNMENT 892 Y12-5k18.q1k chr15 1105 35 970576 971661 C 1071 95.89 1223 ambiguous_trans 13 ALIGNMENT 937 Y12-5k18.q1k chr12 1113 35 941474 942568 C 1079 97.13 1223 ambiguous_trans 5 ALIGNMENT 0 Y12-5k18.q1k chr16 766 587 845062 845253 C 180 0.00 1223 reject_low 24 ALIGNMENT 0 Y12-5k18.q1k chr13 766 62 196985 196984 C 705 0.00 1223 ambiguous_trans 15 ALIGNMENT 0 Y12-5k18.q1k chr05 587 766 497571 497762 F 180 0.00 1223 reject_low 22 ALIGNMENT 0 Y12-5k18.q1k chr10 766 62 473031 473030 C 705 0.00 1223 ambiguous_trans 14 ALIGNMENT 92 Y12-5k18.q1k chr16 1055 767 844765 845061 C 289 78.55 1223 reject_low 24 ALIGNMENT 0 Y12-5k18.q1k chr04 62 766 650765 650764 F 705 0.00 1223 ambiguous_trans 17 ALIGNMENT 0 Y12-5k18.q1k chr13 530 62 185066 185065 C 469 0.00 1223 reject_low 23 ALIGNMENT 953 Y12-5k18.q1k chr07 1111 35 811739 812831 C 1077 97.68 1223 ambiguous_trans 4 ALIGNMENT 95 Y12-5k18.q1k chr13 1098 767 196639 196984 C 332 78.31 1223 ambiguous_trans 15 ALIGNMENT 21 Y12-5k18.q1k chr05 531 586 497515 497570 F 56 80.36 1223 reject_low 22 ALIGNMENT 0 Y12-5k18.q1k chr05 62 530 497515 497514 F 469 0.00 1223 reject_low 22 ALIGNMENT 0 Y12-5k18.q1k chr05 62 766 448664 448663 F 705 0.00 1223 ambiguous_trans 19 ALIGNMENT 910 Y12-5k18.q1k chr02 1105 35 29935 31020 C 1071 96.45 1223 ambiguous_trans 10 ALIGNMENT 0 Y12-5k18.q1k chr16 62 766 809909 809908 F 705 0.00 1223 ambiguous_trans 21 ALIGNMENT 95 Y12-5k18.q1k chr10 1098 767 472685 473030 C 332 78.31 1223 ambiguous_trans 14 ALIGNMENT 92 Y12-5k18.q1k chr05 767 1055 497763 498059 F 289 78.89 1223 reject_low 22 ALIGNMENT 89 Y12-5k18.q1k chr05 767 1098 448664 449009 F 332 77.71 1223 ambiguous_trans 19 ALIGNMENT 92 Y12-5k18.q1k chr13 1055 767 184521 184817 C 289 78.55 1223 reject_low 23 ALIGNMENT 0 Y12-5k18.q1k chr15 766 62 595469 595468 C 705 0.00 1223 ambiguous_trans 18 ALIGNMENT 92 Y12-5k18.q1k chr15 1055 767 595172 595468 C 289 78.55 1223 ambiguous_trans 18 ALIGNMENT 905 Y12-5k20.q1k chr02 33 1034 291544 292537 F 1002 98.00 1281 accept 0 ALIGNMENT 862 Y12-5k20.p1k chr02 1244 25 295509 296742 C 1220 92.13 1278 accept 0 ALIGNMENT 969 Y12-5k21.q1k chr14 1149 36 537436 538549 C 1114 96.68 1192 accept 0 ALIGNMENT 980 Y12-5k21.p1k chr14 25 1148 533433 534560 F 1124 97.33 1181 accept 0 ALIGNMENT 943 Y12-5k22.p1k chr07 1142 22 620488 621597 C 1121 96.07 1260 accept 0 ALIGNMENT 892 Y12-5k22.q1k chr07 28 1096 617290 618352 F 1069 95.98 1244 accept 0 ALIGNMENT 744 Y12-5k24.p1k chr02 1154 227 222549 223478 C 928 94.40 1213 ambiguous_trans 3 ALIGNMENT 761 Y12-5k24.p1k chr13 227 1213 360481 361473 F 987 93.62 1213 ambiguous_trans 1 ALIGNMENT 718 Y12-5k24.p1k chr15 1077 227 596407 597257 C 851 95.89 1213 ambiguous_trans 22 ALIGNMENT 711 Y12-5k24.p1k chr01 227 1077 163721 164572 F 851 95.65 1213 ambiguous_trans 26 ALIGNMENT 733 Y12-5k24.p1k chr13 1077 227 197923 198773 C 851 96.47 1213 ambiguous_trans 6 ALIGNMENT 730 Y12-5k24.p1k chr16 1077 227 58043 58893 C 851 96.36 1213 ambiguous_trans 7 ALIGNMENT 718 Y12-5k24.p1k chr04 227 1077 881777 882627 F 851 95.89 1213 ambiguous_trans 16 ALIGNMENT 874 Y12-5k24.q1k chr13 1041 31 839356 840360 C 1011 97.53 1231 accept 0 ALIGNMENT 718 Y12-5k24.p1k chr12 227 1077 218564 219414 F 851 95.89 1213 ambiguous_trans_ua 19 ALIGNMENT 718 Y12-5k24.p1k chr10 1077 227 479553 480403 C 851 95.89 1213 ambiguous_trans 18 ALIGNMENT 718 Y12-5k24.p1k chr14 1077 227 520752 521602 C 851 95.89 1213 ambiguous_trans 21 ALIGNMENT 740 Y12-5k24.p1k chr14 227 1182 100087 101046 F 956 93.51 1213 ambiguous_trans 2 ALIGNMENT 727 Y12-5k24.p1k chr10 1077 227 473969 474819 C 851 96.24 1213 ambiguous_trans 8 ALIGNMENT 721 Y12-5k24.p1k chr07 227 1077 565326 566176 F 851 96.00 1213 ambiguous_trans 13 ALIGNMENT 718 Y12-5k24.p1k chr16 227 1077 808120 808970 F 851 95.89 1213 ambiguous_trans 23 ALIGNMENT 736 Y12-5k24.p1k chr15 1077 227 119294 120144 C 851 96.59 1213 ambiguous_trans 5 ALIGNMENT 736 Y12-5k24.p1k chr05 227 1077 446875 447725 F 851 96.59 1213 ambiguous_trans 4 ALIGNMENT 718 Y12-5k24.p1k chr13 227 1077 376179 377029 F 851 95.89 1213 ambiguous_trans 20 ALIGNMENT 721 Y12-5k24.p1k chr16 227 1077 854108 854958 F 851 96.00 1213 ambiguous_trans 15 ALIGNMENT 718 Y12-5k24.p1k chr16 1077 227 846000 846850 C 851 95.89 1213 ambiguous_trans 24 ALIGNMENT 724 Y12-5k24.p1k chr12 1077 227 652414 653264 C 851 96.12 1213 ambiguous_trans 9 ALIGNMENT 715 Y12-5k24.p1k chr04 227 1077 990198 991048 F 851 95.77 1213 ambiguous_trans 25 ALIGNMENT 721 Y12-5k24.p1k chr07 1077 227 537356 538206 C 851 96.00 1213 ambiguous_trans 12 ALIGNMENT 721 Y12-5k24.p1k chr04 227 1077 648976 649826 F 851 96.00 1213 ambiguous_trans 10 ALIGNMENT 721 Y12-5k24.p1k chr05 227 1077 495974 496824 F 851 96.00 1213 ambiguous_trans 11 ALIGNMENT 721 Y12-5k24.p1k chr13 1077 227 185756 186606 C 851 96.00 1213 ambiguous_trans 14 ALIGNMENT 718 Y12-5k24.p1k chr08 227 1077 547087 547937 F 851 95.89 1213 ambiguous_trans 17 ALIGNMENT 922 Y12-5l01.q1k chr15 1073 26 858420 859452 C 1048 98.00 1192 accept 0 ALIGNMENT 882 Y12-5l01.p1k chr15 62 1225 854819 855990 F 1164 92.61 1314 accept 0 ALIGNMENT 695 Y12-5l02.p1k chr15 257 1122 672349 673217 F 866 95.38 1320 accept 0 ALIGNMENT 899 Y12-5l02.q1k chr15 1090 33 675063 676105 C 1058 97.26 1222 accept 0 ALIGNMENT 953 Y12-5l04.q1k chr13 30 1174 444024 445164 F 1145 95.90 1300 accept 0 ALIGNMENT 913 Y12-5l04.p1k chr13 1159 38 448149 449282 C 1122 94.83 1287 accept 0 ALIGNMENT 760 Y12-5l05.q1k chr16 1018 32 627606 628575 C 987 93.82 1290 accept 0 ALIGNMENT 390 Y12-5l05.p1k chr16 24 965 625297 626232 F 942 81.95 1303 accept 0 ALIGNMENT 990 Y12-5l06.q1k chr03 39 1193 105610 106768 F 1155 96.10 1248 accept 0 ALIGNMENT 940 Y12-5l06.p1k chr03 1141 24 108533 109663 C 1118 95.97 1292 accept 0 ALIGNMENT 0 Y12-5l08.q1k chr05 711 62 64095 64094 C 650 0.00 1319 reject_low 15 ALIGNMENT 24 Y12-5l08.q1k chr11 1041 1086 2148 2193 F 46 84.78 1319 reject_low 11 ALIGNMENT 0 Y12-5l08.q1k chr13 321 62 923415 923414 C 260 0.00 1319 reject_low 18 ALIGNMENT 0 Y12-5l08.p1k chr07 849 744 9582 9581 C 106 0.00 1358 reject_low 1 ALIGNMENT 0 Y12-5l08.q1k chr09 644 62 434369 434368 C 583 0.00 1319 accept 0 ALIGNMENT 0 Y12-5l08.q1k chr09 1040 1001 433960 434010 C 40 0.00 1319 accept 0 ALIGNMENT 138 Y12-5l08.p1k chr07 743 425 9581 9895 C 319 82.45 1358 reject_low 1 ALIGNMENT 24 Y12-5l08.q1k chr09 1086 1041 433914 433959 C 46 84.78 1319 accept 0 ALIGNMENT 0 Y12-5l08.q1k chr01 62 715 176653 176652 F 654 0.00 1319 reject_low 16 ALIGNMENT 760 Y12-5l08.q1k chr10 34 1086 8083 9149 F 1053 91.93 1319 reject_low 4 ALIGNMENT 1020 Y12-5l08.p1k chr09 23 1140 430081 431202 F 1118 97.85 1358 accept 0 ALIGNMENT 0 Y12-5l08.p1k chr07 424 62 9896 9895 C 363 0.00 1358 reject_low 1 ALIGNMENT 655 Y12-5l08.q1k chr04 1086 34 1523221 1524291 C 1053 88.79 1319 reject_low 9 ALIGNMENT 0 Y12-5l08.q1k chr16 1001 1052 8222 8284 F 52 0.00 1319 reject_low 20 ALIGNMENT 210 Y12-5l08.q1k chr16 322 1000 7531 8221 F 679 79.09 1319 reject_low 20 ALIGNMENT 758 Y12-5l08.q1k chr12 34 1086 12401 13456 F 1053 92.21 1319 reject_low 5 ALIGNMENT 0 Y12-5l08.q1k chr02 596 62 809535 809534 C 535 0.00 1319 reject_low 14 ALIGNMENT 0 Y12-5l08.q1k chr11 1001 1040 2097 2147 F 40 0.00 1319 reject_low 11 ALIGNMENT 216 Y12-5l08.q1k chr13 1000 322 922725 923414 C 679 79.53 1319 reject_low 18 ALIGNMENT 273 Y12-5l08.q1k chr07 656 1086 6230 6663 F 431 88.63 1319 reject_low 1 ALIGNMENT 166 Y12-5l08.q1k chr01 716 1085 176653 177031 F 370 83.24 1319 reject_low 16 ALIGNMENT 231 Y12-5l08.q1k chr05 1086 712 63717 64094 C 375 88.00 1319 reject_low 15 ALIGNMENT 159 Y12-5l08.q1k chr12 728 999 222701 222973 F 272 86.76 1319 reject_low 17 ALIGNMENT 763 Y12-5l08.q1k chr09 34 1086 8100 9166 F 1053 92.02 1319 reject_low 3 ALIGNMENT 0 Y12-5l08.q1k chr13 1043 1001 922671 922724 C 43 0.00 1319 reject_low 18 ALIGNMENT 27 Y12-5l08.q1k chr13 1086 1044 922628 922670 C 43 88.37 1319 reject_low 18 ALIGNMENT 156 Y12-5l08.q1k chr09 1000 645 434011 434368 C 356 83.15 1319 accept 0 ALIGNMENT 0 Y12-5l08.q1k chr07 596 62 1080791 1080790 C 535 0.00 1319 reject_low 13 ALIGNMENT 714 Y12-5l08.q1k chr02 34 1086 6923 7979 F 1053 90.69 1319 reject_low 8 ALIGNMENT 0 Y12-5l08.q1k chr15 321 62 1083611 1083610 C 260 0.00 1319 reject_low 19 ALIGNMENT 0 Y12-5l08.q1k chr15 62 217 11050 11049 F 156 0.00 1319 reject_low 10 ALIGNMENT 0 Y12-5l08.q1k chr12 62 727 222701 222700 F 666 0.00 1319 reject_low 17 ALIGNMENT 251 Y12-5l08.q1k chr07 1086 597 1080301 1080790 C 490 85.51 1319 reject_low 13 ALIGNMENT 731 Y12-5l08.q1k chr11 34 1000 1121 2096 F 967 92.97 1319 reject_low 11 ALIGNMENT 0 Y12-5l08.q1k chr16 62 321 7531 7530 F 260 0.00 1319 reject_low 20 ALIGNMENT 892 Y12-5l08.q1k chr12 1086 34 1062905 1063961 C 1053 95.82 1319 reject_low 2 ALIGNMENT 22 Y12-5l08.q1k chr16 1053 1086 8285 8318 F 34 91.18 1319 reject_low 20 ALIGNMENT 210 Y12-5l08.q1k chr15 1000 322 1082920 1083610 C 679 79.23 1319 reject_low 19 ALIGNMENT 656 Y12-5l08.q1k chr15 218 1086 11050 11921 F 869 92.87 1319 reject_low 10 ALIGNMENT 0 Y12-5l08.q1k chr15 1052 1001 1082857 1082919 C 52 0.00 1319 reject_low 19 ALIGNMENT 274 Y12-5l08.q1k chr08 582 1085 11795 12293 F 504 87.10 1319 reject_low 12 ALIGNMENT 758 Y12-5l08.q1k chr14 1086 34 781907 782962 C 1053 92.21 1319 reject_low 6 ALIGNMENT 0 Y12-5l08.q1k chr08 62 581 11795 11794 F 520 0.00 1319 reject_low 12 ALIGNMENT 22 Y12-5l08.q1k chr15 1086 1053 1082823 1082856 C 34 91.18 1319 reject_low 19 ALIGNMENT 730 Y12-5l08.q1k chr01 34 1086 1117 2180 F 1053 91.07 1319 reject_low 7 ALIGNMENT 0 Y12-5l08.q1k chr07 62 655 6230 6229 F 594 0.00 1319 reject_low 1 ALIGNMENT 242 Y12-5l08.q1k chr02 1086 597 809040 809534 C 490 84.90 1319 reject_low 14 ALIGNMENT 869 Y12-5l09.p1k chr15 36 1252 646473 647688 F 1217 92.28 1342 accept 0 ALIGNMENT 876 Y12-5l09.q1k chr15 1018 30 649677 650659 C 989 97.47 1364 accept 0 ALIGNMENT 544 Y12-5l10.q1k chr04 941 73 1112352 1113215 C 869 88.26 1387 accept 0 ALIGNMENT 847 Y12-5l11.p1k chr14 82 1204 684150 685273 F 1123 93.14 1335 accept 0 ALIGNMENT 1035 Y12-5l11.q1k chr14 1231 33 687118 688321 C 1199 96.08 1274 accept 0 ALIGNMENT 572 Y12-5l12.q1k chr04 42 798 84843 85598 F 757 93.26 1493 accept 0 ALIGNMENT 641 Y12-5l12.p1k chr04 1245 352 87824 88713 C 894 92.06 1358 accept 0 ALIGNMENT 852 Y12-5l13.p1k chr02 1022 20 764471 765464 C 1003 96.81 1393 accept 0 ALIGNMENT 767 Y12-5l13.q1k chr02 18 926 760268 761168 F 909 96.37 1297 accept 0 ALIGNMENT 776 Y12-5l14.p1k chr05 15 941 440544 441467 F 927 96.44 1362 accept_trans 0 ALIGNMENT 832 Y12-5l14.q1k chr05 982 29 449911 450857 C 954 97.27 1316 accept_trans 0 ALIGNMENT 706 Y12-5l15.q1k chr04 907 32 782998 783866 C 876 94.63 1291 accept 0 ALIGNMENT 715 Y12-5l15.p1k chr04 17 909 779442 780332 F 893 94.40 1423 accept 0 ALIGNMENT 490 Y12-5l16.p1k chr04 841 31 1094358 1095167 C 811 88.04 1391 accept 0 ALIGNMENT 856 Y12-5l16.q1k chr04 23 1013 1092243 1093229 F 991 97.58 1256 accept 0 ALIGNMENT 1049 Y12-5l17.p1k chr11 1238 24 292976 294195 C 1215 96.79 1290 accept 0 ALIGNMENT 923 Y12-5l17.q1k chr11 28 1041 289777 290786 F 1014 98.32 1267 accept 0 ALIGNMENT 1023 Y12-5l20.p1k chr12 1191 18 462313 463499 C 1174 96.25 1264 accept 0 ALIGNMENT 1023 Y12-5l20.p1k chr12 1191 18 453176 454362 C 1174 96.25 1264 reject_low 2 ALIGNMENT 1069 Y12-5l20.q1k chr12 35 1223 466621 467826 F 1189 97.65 1277 reject_low 1 ALIGNMENT 1069 Y12-5l20.q1k chr12 35 1223 457484 458689 F 1189 97.65 1277 accept 0 ALIGNMENT 885 Y12-5l21.q1k chr11 30 1053 627387 628394 F 1024 97.46 1275 accept 0 ALIGNMENT 571 Y12-5l21.p1k chr11 1132 456 631104 631790 C 677 95.72 1203 accept 0 ALIGNMENT 877 Y12-5l22.p1k chr12 1213 43 585207 586388 C 1171 93.51 1216 accept 0 ALIGNMENT 976 Y12-5l22.q1k chr12 20 1105 580315 581399 F 1086 97.42 1229 accept 0 ALIGNMENT 739 Y12-5l23.p1k chr04 1011 80 266308 267250 C 932 94.10 1191 accept 0 ALIGNMENT 891 Y12-5l23.q1k chr04 28 1053 263268 264287 F 1026 96.69 1230 accept 0 ALIGNMENT 795 Y12-5l24.q1k chr02 31 912 621514 622394 F 882 97.51 1325 accept 0 ALIGNMENT 22 Y12-5l24.p1k chr05 689 619 88347 88417 C 71 78.87 1252 reject_low 2 ALIGNMENT 0 Y12-5l24.p1k chr05 618 332 88418 88417 C 287 0.00 1252 reject_low 2 ALIGNMENT 0 Y12-5l24.p1k chr07 723 786 119036 119035 F 64 0.00 1252 reject_low 1 ALIGNMENT 0 Y12-5l24.p1k chr05 786 690 88348 88347 C 97 0.00 1252 reject_low 2 ALIGNMENT 745 Y12-5l24.p1k chr02 1249 224 626757 627793 C 1026 91.62 1252 accept 0 ALIGNMENT 0 Y12-5l24.p1k chr07 332 545 118860 118859 F 214 0.00 1252 reject_low 1 ALIGNMENT 46 Y12-5l24.p1k chr07 546 722 118860 119036 F 177 75.71 1252 reject_low 1 ALIGNMENT 902 Y12-5m02.q1k chr08 1062 34 299387 300409 C 1029 97.18 1172 accept 0 ALIGNMENT 937 Y12-5m02.p1k chr08 19 1202 296440 297638 F 1184 94.43 1297 accept 0 ALIGNMENT 816 Y12-5m03.p1k chr13 20 1065 462316 463375 F 1046 94.93 1225 accept 0 ALIGNMENT 1002 Y12-5m03.q1k chr13 1144 39 466759 467860 C 1106 98.46 1144 accept 0 ALIGNMENT 928 Y12-5m04.q1k chr14 1101 34 351605 352662 C 1068 97.66 1185 accept 0 ALIGNMENT 672 Y12-5m04.p1k chr14 152 1097 348652 349611 F 946 91.54 1287 accept 0 ALIGNMENT 758 Y12-5m05.q1k chr07 914 23 217312 218201 C 892 96.30 1406 accept 0 ALIGNMENT 738 Y12-5m05.p1k chr07 179 1063 212693 213585 F 885 95.37 1255 accept 0 ALIGNMENT 652 Y12-5m06.p1k chr12 1083 19 1045669 1046734 C 1065 88.64 1368 accept 0 ALIGNMENT 710 Y12-5m06.q1k chr12 26 924 1042488 1043379 F 899 94.77 1404 accept 0 ALIGNMENT 0 Y12-5m07.p1k chr13 287 869 196332 196331 F 583 0.00 1327 ambiguous_trans 25 ALIGNMENT 932 Y12-5m07.q1k chr07 36 1037 698985 699985 F 1002 98.80 1252 accept 0 ALIGNMENT 550 Y12-5m07.p1k chr08 1102 272 543712 544539 C 831 90.61 1327 ambiguous_trans 13 ALIGNMENT 631 Y12-5m07.p1k chr12 1102 272 215183 216016 C 831 93.98 1327 ambiguous_trans_ua 10 ALIGNMENT 659 Y12-5m07.p1k chr10 272 1181 482951 483862 F 910 92.97 1327 ambiguous_trans 4 ALIGNMENT 0 Y12-5m07.p1k chr13 287 869 184170 184169 F 583 0.00 1327 ambiguous_trans 23 ALIGNMENT 701 Y12-5m07.p1k chr02 272 1181 226026 226931 F 910 94.29 1327 ambiguous_trans 1 ALIGNMENT 401 Y12-5m07.p1k chr12 1102 272 476077 476909 C 831 84.96 1327 ambiguous_trans 20 ALIGNMENT 529 Y12-5m07.p1k chr16 272 1102 849401 850234 F 831 89.89 1327 ambiguous_trans 16 ALIGNMENT 557 Y12-5m07.p1k chr13 272 1181 189154 190059 F 910 89.01 1327 ambiguous_trans 12 ALIGNMENT 0 Y12-5m07.p1k chr13 868 287 362919 362918 C 582 0.00 1327 ambiguous_trans 22 ALIGNMENT 0 Y12-5m07.p1k chr13 869 287 378622 378621 C 583 0.00 1327 ambiguous_trans 24 ALIGNMENT 138 Y12-5m07.p1k chr13 1181 869 362610 362918 C 313 83.71 1327 ambiguous_trans 22 ALIGNMENT 529 Y12-5m07.p1k chr04 272 1102 1100752 1101585 F 831 89.89 1327 ambiguous_trans 15 ALIGNMENT 401 Y12-5m07.p1k chr13 272 1102 201321 202153 F 831 84.96 1327 ambiguous_trans 21 ALIGNMENT 401 Y12-5m07.p1k chr05 1102 272 443495 444327 C 831 84.96 1327 ambiguous_trans 19 ALIGNMENT 51 Y12-5m07.p1k chr13 870 1181 196332 196644 F 312 75.64 1327 ambiguous_trans 25 ALIGNMENT 688 Y12-5m07.p1k chr02 272 1102 264563 265390 F 831 96.27 1327 ambiguous_trans 7 ALIGNMENT 638 Y12-5m07.p1k chr13 1181 272 372720 373631 C 910 92.20 1327 ambiguous_trans 8 ALIGNMENT 535 Y12-5m07.p1k chr16 1102 272 850727 851560 C 831 90.13 1327 ambiguous_trans 14 ALIGNMENT 469 Y12-5m07.p1k chr15 272 1102 122692 123525 F 831 87.48 1327 ambiguous_trans 17 ALIGNMENT 134 Y12-5m07.p1k chr13 870 1181 184170 184477 F 312 83.33 1327 ambiguous_trans 23 ALIGNMENT 695 Y12-5m07.p1k chr13 1181 272 357028 357933 C 910 94.07 1327 ambiguous_trans 2 ALIGNMENT 659 Y12-5m07.p1k chr07 272 1181 540754 541665 F 910 92.97 1327 ambiguous_trans 3 ALIGNMENT 691 Y12-5m07.p1k chr07 1102 272 817500 818327 C 831 96.27 1327 ambiguous_trans 5 ALIGNMENT 112 Y12-5m07.p1k chr13 1181 870 378308 378621 C 312 81.73 1327 ambiguous_trans 24 ALIGNMENT 691 Y12-5m07.p1k chr15 272 1102 599805 600632 F 831 96.27 1327 ambiguous_trans 6 ALIGNMENT 670 Y12-5m07.p1k chr14 1102 272 96712 97539 C 831 95.43 1327 ambiguous_trans 9 ALIGNMENT 620 Y12-5m07.p1k chr05 1009 272 492691 493426 C 738 96.61 1327 ambiguous_trans 11 ALIGNMENT 408 Y12-5m07.p1k chr04 272 1015 986194 986934 F 744 86.96 1327 ambiguous_trans 18 ALIGNMENT 923 Y12-5m08.q1k chr12 32 1159 201036 202152 F 1128 95.57 1309 accept 0 ALIGNMENT 673 Y12-5m08.p1k chr12 1135 293 205595 206434 C 843 95.02 1349 accept 0 ALIGNMENT 741 Y12-5m09.q1k chr04 906 34 244260 245119 C 873 97.02 1298 accept 0 ALIGNMENT 964 Y12-5m09.p1k chr04 21 1181 238975 240142 F 1161 95.00 1263 accept 0 ALIGNMENT 909 Y12-5m10.p1k chr02 1132 19 436735 437836 C 1114 95.87 1343 accept 0 ALIGNMENT 973 Y12-5m10.q1k chr02 33 1113 431576 432652 F 1081 97.78 1263 accept 0 ALIGNMENT 529 Y12-5m11.q1k chr12 1072 296 1018136 1018909 C 777 90.35 1229 reject_low 1 ALIGNMENT 0 Y12-5m11.q1k chr12 295 62 1018910 1018909 C 234 0.00 1229 reject_low 1 ALIGNMENT 990 Y12-5m11.q1k chr13 34 1227 146214 147395 F 1194 95.81 1229 accept 0 ALIGNMENT 969 Y12-5m11.p1k chr13 1164 22 149561 150723 C 1143 96.24 1256 accept 0 ALIGNMENT 1002 Y12-5m13.q1k chr13 1217 37 241224 242397 C 1181 96.44 1248 accept 0 ALIGNMENT 622 Y12-5m13.p1k chr13 274 1098 238409 239230 F 825 93.58 1282 accept 0 ALIGNMENT 853 Y12-5m14.p1k chr08 82 1167 301392 302467 F 1086 93.74 1328 accept 0 ALIGNMENT 941 Y12-5m14.q1k chr08 1218 29 303067 304256 C 1190 94.37 1270 accept 0 ALIGNMENT 334 Y12-5m15.p1k vc_7 1 492 13918 14405 F 492 90.24 564 reject_vc 8 ALIGNMENT 340 Y12-5m15.p1k vc_1 492 1 1262 1749 C 492 90.65 564 reject_vc 2 ALIGNMENT 334 Y12-5m15.p1k vc_7 1 492 456 943 F 492 90.24 564 reject_vc 7 ALIGNMENT 340 Y12-5m15.p1k vc_3 492 1 1262 1749 C 492 90.65 564 reject_vc 4 ALIGNMENT 302 Y12-5m15.q1k chr12 40 343 462928 463231 F 304 100.00 343 accept 1 ALIGNMENT 340 Y12-5m15.p1k vc_6 1 492 3712 4199 F 492 90.65 564 reject_vc 6 ALIGNMENT 340 Y12-5m15.p1k vc_2 492 1 1262 1749 C 492 90.65 564 reject_vc 3 ALIGNMENT 340 Y12-5m15.p1k vc_5 492 1 4182 4669 C 492 90.65 564 reject_vc 5 ALIGNMENT 302 Y12-5m15.q1k chr12 40 343 453791 454094 F 304 100.00 343 accept 0 ALIGNMENT 824 Y12-5m16.q1k chr07 931 26 92822 93719 C 906 98.12 1357 accept 0 ALIGNMENT 681 Y12-5m16.p1k chr07 358 1272 89286 90218 F 915 95.74 1416 accept 0 ALIGNMENT 947 Y12-5m17.q1k chr14 1189 35 453467 454631 C 1155 96.45 1189 accept 0 ALIGNMENT 852 Y12-5m17.p1k chr14 79 1112 449124 450171 F 1034 95.45 1194 accept 0 ALIGNMENT 0 Y12-5m18.q1k chr15 62 830 427970 427969 F 769 0.00 1293 reject_low 2 ALIGNMENT 29 Y12-5m18.q1k chr11 831 867 576141 576177 F 37 97.30 1293 reject_low 1 ALIGNMENT 0 Y12-5m18.q1k chr15 62 827 427904 427903 F 766 0.00 1293 reject_low 3 ALIGNMENT 0 Y12-5m18.q1k chr11 62 830 576141 576140 F 769 0.00 1293 reject_low 1 ALIGNMENT 29 Y12-5m18.q1k chr15 831 867 427970 428006 F 37 97.30 1293 reject_low 2 ALIGNMENT 957 Y12-5m18.q1k chr15 1116 30 768432 769505 C 1087 97.15 1293 accept 0 ALIGNMENT 22 Y12-5m18.q1k chr15 828 867 427904 427943 F 40 90.00 1293 reject_low 3 ALIGNMENT 741 Y12-5m18.p1k chr15 288 1154 765111 765990 F 867 97.00 1266 accept 0 ALIGNMENT 925 Y12-5m19.p1k chr12 1183 17 282147 283316 C 1167 94.26 1221 accept 0 ALIGNMENT 1036 Y12-5m19.q1k chr12 27 1176 278179 279338 F 1150 97.22 1187 accept 0 ALIGNMENT 951 Y12-5m22.q1k chr09 29 1141 161369 162469 F 1113 95.96 1273 accept_chi 0 ALIGNMENT 824 Y12-5m22.p1k chr10 1176 50 224537 225673 C 1127 92.19 1210 accept_chi 1 ALIGNMENT 653 Y12-5m23.q1k chr10 34 1012 716270 717223 F 979 90.81 1214 accept 0 ALIGNMENT 526 Y12-5m23.p1k chr10 1024 420 716273 716880 C 605 96.53 1214 accept 0 ALIGNMENT 772 Y12-5m24.p1k chr02 179 1154 100104 101081 F 976 93.85 1213 accept 0 ALIGNMENT 936 Y12-5m24.q1k chr02 1126 35 103176 104261 C 1092 97.71 1214 accept 0 ALIGNMENT 923 Y12-5n01.q1k chr14 1076 35 304708 305746 C 1042 97.22 1152 accept 0 ALIGNMENT 647 Y12-5n01.p1k chr14 275 1102 301761 302608 F 828 94.08 1256 accept 0 ALIGNMENT 0 Y12-5n02.p1k chr10 443 62 75170 75169 C 382 0.00 1303 reject_low 1 ALIGNMENT 892 Y12-5n02.p1k chr12 17 1113 856628 857732 F 1097 95.26 1303 accept 0 ALIGNMENT 0 Y12-5n02.p1k chr10 775 706 74909 74908 C 70 0.00 1303 reject_low 1 ALIGNMENT 183 Y12-5n02.p1k chr10 705 444 74908 75169 C 262 90.46 1303 reject_low 1 ALIGNMENT 1000 Y12-5n02.q1k chr12 1153 32 860437 861554 C 1122 97.86 1156 accept 0 ALIGNMENT 982 Y12-5n03.q1k chr02 26 1129 293125 294218 F 1104 97.46 1157 accept 0 ALIGNMENT 972 Y12-5n03.p1k chr02 1139 26 297387 298500 C 1114 96.59 1311 accept 0 ALIGNMENT 847 Y12-5n04.q1k chr12 30 962 753176 754101 F 933 98.50 1261 accept_chi 1 ALIGNMENT 850 Y12-5n04.p1k chr09 14 1125 366347 367504 F 1112 93.53 1291 accept_chi 0 ALIGNMENT 585 Y12-5n05.p1k chr15 1125 305 84492 85300 C 821 91.96 1410 accept 0 ALIGNMENT 667 Y12-5n06.p1k chr04 1154 258 356059 356945 C 897 92.87 1387 accept 0 ALIGNMENT 754 Y12-5n08.q1k chr03 13 934 105610 106517 F 922 95.01 1307 accept 0 ALIGNMENT 814 Y12-5n09.q1k chr13 997 30 212241 213203 C 968 95.76 1319 accept 0 ALIGNMENT 986 Y12-5n10.p1k chr04 23 1138 1108692 1109821 F 1116 96.95 1313 accept 0 ALIGNMENT 1027 Y12-5n10.q1k chr04 1198 37 1112072 1113241 C 1162 97.16 1262 accept 0 ALIGNMENT 0 Y12-5n11.q1k chr15 927 387 497305 497304 C 541 0.00 1304 reject_low 1 ALIGNMENT 708 Y12-5n11.q1k chr13 1015 48 404050 405010 C 968 92.36 1304 accept 0 ALIGNMENT 22 Y12-5n11.q1k chr15 951 928 497281 497304 C 24 100.00 1304 reject_low 1 ALIGNMENT 312 Y12-5n12.p1k chr12 554 1258 451593 452291 F 705 82.84 1374 reject_low 1 ALIGNMENT 389 Y12-5n12.p1k chr12 257 1258 460419 461428 F 1002 81.34 1374 accept 0 ALIGNMENT 0 Y12-5n12.p1k chr12 522 553 451542 451592 F 32 0.00 1374 reject_low 1 ALIGNMENT 63 Y12-5n12.p1k chr12 394 521 451419 451541 F 128 85.94 1374 reject_low 1 ALIGNMENT 185 Y12-5n12.p1k chr12 763 1121 489770 490123 F 359 85.24 1374 reject_low 2 ALIGNMENT 439 Y12-5n12.q1k chr12 1003 30 463159 464097 C 974 84.70 1376 accept 0 ALIGNMENT 439 Y12-5n12.q1k chr12 1003 30 454022 454960 C 974 84.70 1376 reject_low 1 ALIGNMENT 864 Y12-5n13.q1k chr10 28 1010 446430 447410 F 983 97.05 1276 accept 0 ALIGNMENT 907 Y12-5n13.p1k chr10 1001 21 450046 451024 C 981 98.57 1357 accept 0 ALIGNMENT 888 Y12-5n14.q1k chr10 31 1112 525488 526555 F 1082 96.30 1353 accept 0 ALIGNMENT 939 Y12-5n14.p1k chr10 1201 16 529047 530238 C 1186 94.27 1310 accept 0 ALIGNMENT 924 Y12-5n15.p1k chr11 34 1201 232780 233945 F 1168 95.29 1346 accept 0 ALIGNMENT 1063 Y12-5n15.q1k chr11 1304 34 235804 237049 C 1271 96.22 1305 accept 0 ALIGNMENT 436 Y12-5n16.q1k chr04 767 33 546115 546838 C 735 87.76 1293 accept 0 ALIGNMENT 1035 Y12-5n17.q1k chr12 1187 29 123780 124952 C 1159 96.89 1224 accept 0 ALIGNMENT 776 Y12-5n17.p1k chr12 29 1222 119172 120329 F 1194 91.54 1303 accept 0 ALIGNMENT 852 Y12-5n18.p1k chr12 39 1266 939229 940443 F 1228 91.21 1299 accept_trans 0 ALIGNMENT 983 Y12-5n18.q1k chr12 1275 21 948091 949330 C 1255 94.66 1275 accept_trans 0 ALIGNMENT 1064 Y12-5n20.q1k chr04 1279 33 249769 251014 C 1247 96.39 1279 accept_chi 0 ALIGNMENT 797 Y12-5n20.p1k chr12 1188 148 922661 923694 C 1041 93.76 1272 accept_chi 1 ALIGNMENT 650 Y12-5n21.p1k chr13 1133 280 806421 807264 C 854 94.03 1245 accept 0 ALIGNMENT 915 Y12-5n21.q1k chr13 32 1200 801548 802728 F 1169 94.35 1249 accept 0 ALIGNMENT 787 Y12-5n22.p1k chr07 1229 219 463641 464645 C 1011 93.97 1237 accept 0 ALIGNMENT 966 Y12-5n22.q1k chr07 33 1166 460050 461178 F 1134 96.03 1301 accept 0 ALIGNMENT 807 Y12-5n23.p1k chr04 152 1126 707571 708550 F 975 95.08 1195 accept 0 ALIGNMENT 934 Y12-5n23.q1k chr04 1071 26 710866 711899 C 1046 97.90 1253 accept 0 ALIGNMENT 756 Y12-5n24.p1k chr04 1161 289 1455583 1456463 C 873 96.91 1230 accept 0 ALIGNMENT 974 Y12-5n24.q1k chr04 38 1209 1450512 1451668 F 1172 96.25 1249 accept 0 ALIGNMENT 0 Y12-5o01.p1k chr09 805 539 9132 9131 C 267 0.00 1250 reject_low 3 ALIGNMENT 0 Y12-5o01.p1k chr02 805 539 7945 7944 C 267 0.00 1250 reject_low 2 ALIGNMENT 23 Y12-5o01.p1k chr02 538 512 7944 7970 C 27 96.30 1250 reject_low 2 ALIGNMENT 882 Y12-5o01.q1k chr12 1001 37 972590 973549 C 965 98.76 1098 accept_chi 0 ALIGNMENT 0 Y12-5o01.p1k chr09 511 302 9158 9157 C 210 0.00 1250 reject_low 3 ALIGNMENT 0 Y12-5o01.p1k chr02 511 302 7971 7970 C 210 0.00 1250 reject_low 2 ALIGNMENT 23 Y12-5o01.p1k chr09 538 512 9131 9157 C 27 96.30 1250 reject_low 3 ALIGNMENT 703 Y12-5o01.p1k chr05 1192 273 186705 187623 C 920 93.26 1250 accept_chi 1 ALIGNMENT 566 Y12-5o03.p1k chr05 314 1100 279285 280063 F 787 93.01 1336 accept 0 ALIGNMENT 642 Y12-5o04.p1k chr05 813 17 445837 446633 C 797 94.48 1460 ambiguous_trans 9 ALIGNMENT 636 Y12-5o04.p1k chr12 17 813 653508 654304 F 797 94.23 1460 ambiguous_trans 24 ALIGNMENT 639 Y12-5o04.p1k chr16 17 813 847095 847891 F 797 94.35 1460 ambiguous_trans 23 ALIGNMENT 649 Y12-5o04.p1k chr12 882 17 217462 218322 C 866 92.96 1460 ambiguous_trans_ua 4 ALIGNMENT 639 Y12-5o04.p1k chr04 17 813 1098446 1099242 F 797 94.35 1460 ambiguous_trans 18 ALIGNMENT 639 Y12-5o04.p1k chr07 813 17 564288 565084 C 797 94.35 1460 ambiguous_trans 20 ALIGNMENT 676 Y12-5o04.p1k chr02 17 882 262254 263114 F 866 94.00 1460 ambiguous_trans 3 ALIGNMENT 606 Y12-5o04.p1k chr16 813 17 853070 853866 C 797 92.97 1460 ambiguous_trans 25 ALIGNMENT 640 Y12-5o04.p1k chr07 943 17 819719 820633 C 927 91.59 1460 ambiguous_trans 2 ALIGNMENT 678 Y12-5o04.p1k chr04 813 17 880739 881535 C 797 95.98 1460 ambiguous_trans 8 ALIGNMENT 642 Y12-5o04.p1k chr15 17 813 120386 121182 F 797 94.48 1460 ambiguous_trans 15 ALIGNMENT 679 Y12-5o04.p1k chr02 17 943 223720 224634 F 927 92.99 1460 ambiguous_trans 1 ALIGNMENT 642 Y12-5o04.p1k chr10 17 813 480645 481441 F 797 94.48 1460 ambiguous_trans 11 ALIGNMENT 639 Y12-5o04.p1k chr16 813 17 807082 807878 C 797 94.35 1460 ambiguous_trans 22 ALIGNMENT 642 Y12-5o04.p1k chr13 17 813 199015 199811 F 797 94.48 1460 ambiguous_trans 13 ALIGNMENT 642 Y12-5o04.p1k chr10 17 813 475061 475857 F 797 94.48 1460 ambiguous_trans 10 ALIGNMENT 646 Y12-5o04.p1k chr05 882 17 494872 495732 C 866 92.84 1460 ambiguous_trans 5 ALIGNMENT 639 Y12-5o04.p1k chr16 17 813 59135 59931 F 797 94.35 1460 ambiguous_trans 21 ALIGNMENT 639 Y12-5o04.p1k chr04 813 17 647938 648734 C 797 94.35 1460 ambiguous_trans 17 ALIGNMENT 646 Y12-5o04.p1k chr13 882 17 359379 360239 C 866 92.84 1460 ambiguous_trans 7 ALIGNMENT 639 Y12-5o04.p1k chr07 17 813 538448 539244 F 797 94.35 1460 ambiguous_trans 19 ALIGNMENT 639 Y12-5o04.p1k chr01 813 17 162683 163479 C 797 94.35 1460 ambiguous_trans 16 ALIGNMENT 832 Y12-5o04.q1k chr10 36 1116 380669 381744 F 1081 93.62 1228 accept 0 ALIGNMENT 642 Y12-5o04.p1k chr13 813 17 375141 375937 C 797 94.48 1460 ambiguous_trans 14 ALIGNMENT 646 Y12-5o04.p1k chr08 882 17 545985 546845 C 866 92.84 1460 ambiguous_trans 6 ALIGNMENT 642 Y12-5o04.p1k chr13 17 813 186848 187644 F 797 94.48 1460 ambiguous_trans 12 ALIGNMENT 684 Y12-5o05.q1k chr16 46 1127 324020 325077 F 1082 90.02 1291 accept 0 ALIGNMENT 940 Y12-5o06.q1k chr14 1222 30 646262 647453 C 1193 94.72 1241 accept 0 ALIGNMENT 758 Y12-5o06.p1k chr14 43 1102 643037 644117 F 1060 92.08 1312 accept 0 ALIGNMENT 111 Y12-5o07.q1k chrm 1069 742 24555 24870 C 328 83.84 1267|0,1 accept 0 ALIGNMENT 0 Y12-5o07.q1k chrm 742 743 24870 24904 C 0 0.00 1267 accept 0 ALIGNMENT 444 Y12-5o07.q1k chrm 743 155 24904 25494 C 589 96.43 1267|1,0 accept 0 ALIGNMENT 985 Y12-5o11.p1k chr12 1207 27 738896 740080 C 1181 95.51 1244 accept 0 ALIGNMENT 619 Y12-5o12.p1k chr09 13 864 145526 146375 F 852 92.84 1372 accept 0 ALIGNMENT 866 Y12-5o12.q1k chr09 982 40 149021 149966 C 943 97.77 1284 accept 0 ALIGNMENT 972 Y12-5o13.p1k chr16 23 1153 799393 800533 F 1131 96.46 1237 accept 0 ALIGNMENT 1046 Y12-5o13.q1k chr16 1235 35 810633 811824 C 1201 96.67 1237 accept 0 ALIGNMENT 956 Y12-5o14.p1k chr04 33 1235 1027755 1028957 F 1203 94.68 1316 accept 0 ALIGNMENT 941 Y12-5o14.q1k chr04 1172 28 1031234 1032372 C 1145 95.55 1281 accept 0 ALIGNMENT 885 Y12-5o15.p1k chr07 30 1226 272054 273238 F 1197 92.31 1249 accept 0 ALIGNMENT 0 Y12-5o15.p1k chr11 317 817 78844 78843 F 501 0.00 1249 reject_low 3 ALIGNMENT 20 Y12-5o15.p1k chr11 277 316 78805 78844 F 40 95.00 1249 reject_low 3 ALIGNMENT 0 Y12-5o15.p1k chr02 817 332 646080 646079 C 486 0.00 1249 reject_low 2 ALIGNMENT 0 Y12-5o15.p1k chr07 495 817 272516 272515 F 323 0.00 1249 reject_low 1 ALIGNMENT 312 Y12-5o15.p1k chr07 89 494 272113 272516 F 406 93.60 1249 reject_low 1 ALIGNMENT 20 Y12-5o15.p1k chr02 331 277 646079 646133 C 55 89.09 1249 reject_low 2 ALIGNMENT 900 Y12-5o15.q1k chr07 1037 37 275459 276455 C 1001 97.70 1226 accept 0 ALIGNMENT 0 Y12-5o17.p1k chr03 221 271 313969 314019 F 51 0.00 1213 reject_low 4 ALIGNMENT 0 Y12-5o17.p1k chr03 92 168 313917 313916 F 77 0.00 1213 reject_low 4 ALIGNMENT 0 Y12-5o17.p1k chr04 356 92 18477 18476 C 265 0.00 1213 reject_low 3 ALIGNMENT 25 Y12-5o17.p1k chr03 169 220 313917 313968 F 52 82.69 1213 reject_low 4 ALIGNMENT 683 Y12-5o17.p1k chr10 147 1177 727074 728108 F 1031 89.72 1213 reject_low 1 ALIGNMENT 313 Y12-5o17.p1k chr03 272 1047 314020 314799 F 776 81.06 1213 reject_low 4 ALIGNMENT 355 Y12-5o17.p1k chr04 1063 357 17767 18476 C 707 84.30 1213 reject_low 3 ALIGNMENT 708 Y12-5o17.p1k chr06 876 28 14685 15533 C 849 95.05 1213 accept_tel 0 ALIGNMENT 0 Y12-5o17.p1k chr14 152 92 17225 17224 C 61 0.00 1213 reject_low 2 ALIGNMENT 445 Y12-5o17.p1k chr14 1121 153 16252 17224 C 969 82.77 1213 reject_low 2 ALIGNMENT 0 Y12-5o17.p1k chr10 92 146 727074 727073 F 55 0.00 1213 reject_low 1 ALIGNMENT 67 Y12-5o18.q1k chr06 189 33 143535 143692 C 157 82.80 1230 reject_low 25 ALIGNMENT 0 Y12-5o18.q1k chr10 859 190 472378 472377 C 670 0.00 1230 reject_low 13 ALIGNMENT 107 Y12-5o18.q1k chr11 31 191 457955 458116 F 161 90.68 1230 reject_low 2 ALIGNMENT 0 Y12-5o18.q1k chr03 190 859 143077 143076 F 670 0.00 1230 reject_low 8 ALIGNMENT 0 Y12-5o18.q1k chr14 859 190 524731 524730 C 670 0.00 1230 reject_low 27 ALIGNMENT 91 Y12-5o18.q1k chr09 31 189 197327 197485 F 159 87.42 1230 reject_low 17 ALIGNMENT 87 Y12-5o18.q1k chr06 186 31 137658 137809 C 156 88.46 1230 reject_low 19 ALIGNMENT 995 Y12-5o18.q1k chr10 1128 31 539747 540838 C 1098 98.36 1230 accept 0 ALIGNMENT 0 Y12-5o18.q1k chr13 181 859 463444 463443 F 679 0.00 1230 reject_low 12 ALIGNMENT 67 Y12-5o18.q1k chr01 33 189 160418 160575 F 157 82.80 1230 reject_low 21 ALIGNMENT 0 Y12-5o18.q1k chr13 190 859 362917 362916 F 670 0.00 1230 reject_low 7 ALIGNMENT 0 Y12-5o18.q1k chr03 192 859 124464 124463 F 668 0.00 1230 reject_low 3 ALIGNMENT 0 Y12-5o18.q1k chr03 859 190 151519 151518 C 670 0.00 1230 reject_low 11 ALIGNMENT 105 Y12-5o18.q1k chr02 189 31 221040 221199 C 159 90.57 1230 reject_low 4 ALIGNMENT 0 Y12-5o18.q1k chr11 192 859 458116 458115 F 668 0.00 1230 reject_low 2 ALIGNMENT 0 Y12-5o18.q1k chr13 190 859 373033 373032 F 670 0.00 1230 reject_low 15 ALIGNMENT 67 Y12-5o18.q1k chr14 189 33 524730 524887 C 157 82.80 1230 reject_low 27 ALIGNMENT 67 Y12-5o18.q1k chr01 33 189 166006 166163 F 157 82.80 1230 reject_low 22 ALIGNMENT 67 Y12-5o18.q1k chr14 189 33 519164 519321 C 157 82.80 1230 reject_low 26 ALIGNMENT 55 Y12-5o18.q1k chr01 189 33 189420 189577 C 157 80.25 1230 reject_low 28 ALIGNMENT 0 Y12-5o18.q1k chr03 859 139 149532 149531 C 721 0.00 1230 reject_low 29 ALIGNMENT 99 Y12-5o18.q1k chr10 189 33 472377 472535 C 157 89.81 1230 reject_low 13 ALIGNMENT 102 Y12-5o18.q1k chr08 31 189 549478 549637 F 159 89.94 1230 reject_low 10 ALIGNMENT 0 Y12-5o18.q1k chr06 859 190 143536 143535 C 670 0.00 1230 reject_low 25 ALIGNMENT 99 Y12-5o18.q1k chr10 189 33 483549 483707 C 157 89.81 1230 reject_low 14 ALIGNMENT 67 Y12-5o18.q1k chr03 33 189 168771 168928 F 157 82.80 1230 reject_low 23 ALIGNMENT 0 Y12-5o18.q1k chr03 190 859 168928 168927 F 670 0.00 1230 reject_low 23 ALIGNMENT 0 Y12-5o18.q1k chr12 190 859 818403 818402 F 670 0.00 1230 reject_low 16 ALIGNMENT 0 Y12-5o18.q1k chr01 859 190 189421 189420 C 670 0.00 1230 reject_low 28 ALIGNMENT 118 Y12-5o18.q1k chr07 189 31 114943 115101 C 159 93.08 1230 reject_low 1 ALIGNMENT 102 Y12-5o18.q1k chr03 31 189 142918 143077 F 159 89.94 1230 reject_low 8 ALIGNMENT 785 Y12-5o18.p1k chr10 291 1229 535856 536797 F 939 95.74 1299 accept 0 ALIGNMENT 0 Y12-5o18.q1k chr07 190 859 823311 823310 F 670 0.00 1230 reject_low 6 ALIGNMENT 0 Y12-5o18.q1k chr01 190 859 166163 166162 F 670 0.00 1230 reject_low 22 ALIGNMENT 105 Y12-5o18.q1k chr07 31 189 817570 817729 F 159 90.57 1230 reject_low 5 ALIGNMENT 0 Y12-5o18.q1k chr02 859 190 221041 221040 C 670 0.00 1230 reject_low 4 ALIGNMENT 100 Y12-5o18.q1k chr13 31 180 463295 463444 F 150 90.67 1230 reject_low 12 ALIGNMENT 43 Y12-5o18.q1k chr03 138 30 149531 149639 C 109 83.49 1230 reject_low 29 ALIGNMENT 90 Y12-5o18.q1k chr01 189 31 183136 183295 C 159 87.42 1230 reject_low 18 ALIGNMENT 105 Y12-5o18.q1k chr07 31 189 823152 823311 F 159 90.57 1230 reject_low 6 ALIGNMENT 96 Y12-5o18.q1k chr13 33 189 372875 373033 F 157 89.17 1230 reject_low 15 ALIGNMENT 0 Y12-5o18.q1k chr09 190 859 197485 197484 F 670 0.00 1230 reject_low 17 ALIGNMENT 0 Y12-5o18.q1k chr07 190 859 817729 817728 F 670 0.00 1230 reject_low 5 ALIGNMENT 0 Y12-5o18.q1k chr07 859 190 114944 114943 C 670 0.00 1230 reject_low 1 ALIGNMENT 0 Y12-5o18.q1k chr06 859 190 137909 137908 C 670 0.00 1230 reject_low 24 ALIGNMENT 105 Y12-5o18.q1k chr13 31 189 362758 362917 F 159 90.57 1230 reject_low 7 ALIGNMENT 0 Y12-5o18.q1k chr06 859 187 137659 137658 C 673 0.00 1230 reject_low 19 ALIGNMENT 0 Y12-5o18.q1k chr01 190 859 160575 160574 F 670 0.00 1230 reject_low 21 ALIGNMENT 0 Y12-5o18.q1k chr01 859 190 183137 183136 C 670 0.00 1230 reject_low 18 ALIGNMENT 83 Y12-5o18.q1k chr10 31 160 354623 354753 F 130 90.00 1230 reject_low 20 ALIGNMENT 0 Y12-5o18.q1k chr10 161 859 354753 354752 F 699 0.00 1230 reject_low 20 ALIGNMENT 104 Y12-5o18.q1k chr03 31 191 124303 124464 F 161 90.06 1230 reject_low 3 ALIGNMENT 94 Y12-5o18.q1k chr12 31 189 818245 818403 F 159 88.05 1230 reject_low 16 ALIGNMENT 100 Y12-5o18.q1k chr03 189 31 151518 151676 C 159 89.94 1230 reject_low 11 ALIGNMENT 0 Y12-5o18.q1k chr10 859 190 483550 483549 C 670 0.00 1230 reject_low 14 ALIGNMENT 0 Y12-5o18.q1k chr07 859 190 401963 401962 C 670 0.00 1230 reject_low 9 ALIGNMENT 67 Y12-5o18.q1k chr06 189 33 137908 138065 C 157 82.80 1230 reject_low 24 ALIGNMENT 102 Y12-5o18.q1k chr07 189 31 401962 402121 C 159 89.94 1230 reject_low 9 ALIGNMENT 0 Y12-5o18.q1k chr08 190 859 549637 549636 F 670 0.00 1230 reject_low 10 ALIGNMENT 0 Y12-5o18.q1k chr14 859 190 519165 519164 C 670 0.00 1230 reject_low 26 ALIGNMENT 22 Y12-5o21.p1k chr14 1021 996 343999 344024 C 26 96.15 1203 reject_low 5 ALIGNMENT 0 Y12-5o21.p1k chr15 272 417 236234 236233 F 146 0.00 1203 reject_low 4 ALIGNMENT 23 Y12-5o21.p1k chr16 972 1012 792983 793023 F 41 87.80 1203 reject_low 2 ALIGNMENT 0 Y12-5o21.p1k chr14 830 438 343994 343993 C 393 0.00 1203 reject_low 3 ALIGNMENT 0 Y12-5o21.p1k chr02 974 272 464277 464276 C 703 0.00 1203 reject_low 1 ALIGNMENT 20 Y12-5o21.p1k chr14 437 415 343993 344015 C 23 100.00 1203 reject_low 3 ALIGNMENT 0 Y12-5o21.p1k chr14 995 272 344025 344024 C 724 0.00 1203 reject_low 5 ALIGNMENT 32 Y12-5o21.p1k chr02 1084 975 464161 464276 C 110 81.82 1203 reject_low 1 ALIGNMENT 0 Y12-5o21.p1k chr16 272 971 792983 792982 F 700 0.00 1203 reject_low 2 ALIGNMENT 20 Y12-5o21.p1k chr15 418 438 236234 236254 F 21 100.00 1203 reject_low 4 ALIGNMENT 753 Y12-5o21.p1k chr15 169 1178 235396 236410 F 1010 93.37 1203 accept 0 ALIGNMENT 0 Y12-5o21.p1k chr14 414 272 344016 344015 C 143 0.00 1203 reject_low 3 ALIGNMENT 0 Y12-5o21.p1k chr15 439 830 236254 236253 F 392 0.00 1203 reject_low 4 ALIGNMENT 992 Y12-5o21.q1k chr15 1131 35 238553 239646 C 1097 97.54 1184 accept 0 ALIGNMENT 633 Y12-5o23.q1k chr06 797 37 83420 84178 C 761 95.66 1291 accept 0 ALIGNMENT 857 Y12-5o23.p1k chr06 103 1170 78404 79467 F 1068 94.48 1174 accept 0 ALIGNMENT 21 Y12-5o24.p1k chr15 572 519 780080 780134 C 54 83.33 1207 reject_low 1 ALIGNMENT 163 Y12-5o24.p1k chr15 428 82 780252 780599 C 347 82.71 1207 reject_low 1 ALIGNMENT 948 Y12-5o24.q1k chr16 1074 33 284146 285183 C 1042 98.27 1241 accept 0 ALIGNMENT 0 Y12-5o24.p1k chr15 518 429 780135 780251 C 90 0.00 1207 reject_low 1 ALIGNMENT 872 Y12-5o24.p1k chr16 79 1186 281049 282156 F 1108 93.95 1207 accept 0 ALIGNMENT 0 Y12-5o24.p1k chr15 859 573 780081 780080 C 287 0.00 1207 reject_low 1 ALIGNMENT 0 Y12-5p01.q1k chr08 883 282 558620 558620 C 602 0.00 1103 reject_low 19 ALIGNMENT 0 Y12-5p01.q1k chr12 282 836 9544 9543 F 555 0.00 1103 reject_low 12 ALIGNMENT 0 Y12-5p01.q1k chr08 282 883 3742 3742 F 602 0.00 1103 reject_low 18 ALIGNMENT 0 Y12-5p01.q1k chr13 282 883 3886 3886 F 602 0.00 1103 reject_low 20 ALIGNMENT 29 Y12-5p01.q1k chr02 80 112 4079 4111 F 33 96.97 1103 reject_low 17 ALIGNMENT 0 Y12-5p01.q1k chr08 79 59 558753 558742 C 21 0.00 1103 reject_low 19 ALIGNMENT 473 Y12-5p01.q1k chr12 1039 505 1066572 1067097 C 535 97.38 1103 reject_low 10 ALIGNMENT 0 Y12-5p01.q1k chr12 59 79 9423 9412 F 21 0.00 1103 reject_low 11 ALIGNMENT 0 Y12-5p01.q1k chr02 59 79 4089 4078 F 21 0.00 1103 reject_low 17 ALIGNMENT 53 Y12-5p01.q1k chr16 281 225 944168 944224 C 57 98.25 1103 reject_low 15 ALIGNMENT 99 Y12-5p01.q1k chr13 884 1055 3887 4047 F 172 90.12 1103 reject_low 20 ALIGNMENT 53 Y12-5p01.q1k chr12 225 281 9488 9544 F 57 98.25 1103 reject_low 12 ALIGNMENT 99 Y12-5p01.q1k chr12 884 1055 4011 4171 F 172 90.12 1103 reject_low 13 ALIGNMENT 53 Y12-5p01.q1k chr02 225 281 4154 4210 F 57 98.25 1103 reject_low 17 ALIGNMENT 24 Y12-5p01.q1k chr08 133 162 3639 3668 F 30 93.33 1103 reject_low 18 ALIGNMENT 0 Y12-5p01.q1k chr06 282 885 3047 3049 F 604 0.00 1103 reject_low 16 ALIGNMENT 29 Y12-5p01.q1k chr12 30 58 3859 3887 F 29 100.00 1103 reject_low 12,13,14 ALIGNMENT 29 Y12-5p01.q1k chr08 58 30 558743 558771 C 29 100.00 1103 reject_low 19 ALIGNMENT 0 Y12-5p01.q1k chr08 132 113 558724 558719 C 20 0.00 1103 reject_low 19 ALIGNMENT 473 Y12-5p01.q1k chr05 505 1030 4586 5104 F 526 97.72 1103 reject_low 9 ALIGNMENT 24 Y12-5p01.q1k chr06 133 162 2944 2973 F 30 93.33 1103 reject_low 16 ALIGNMENT 29 Y12-5p01.q1k chr08 112 80 558720 558752 C 33 96.97 1103 reject_low 19 ALIGNMENT 24 Y12-5p01.q1k chr13 133 162 3783 3812 F 30 93.33 1103 reject_low 20 ALIGNMENT 901 Y12-5p01.q1k chr14 30 1055 4107 5121 F 1026 96.78 1103 ambiguous_tel 7 ALIGNMENT 24 Y12-5p01.q1k chr02 133 162 4108 4137 F 30 93.33 1103 reject_low 17 ALIGNMENT 29 Y12-5p01.q1k chr08 30 58 3591 3619 F 29 100.00 1103 reject_low 18 ALIGNMENT 0 Y12-5p01.q1k chr12 59 79 3888 3877 F 21 0.00 1103 reject_low 12,13,14 ALIGNMENT 29 Y12-5p01.q1k chr12 80 112 3878 3910 F 33 96.97 1103 reject_low 12,13,14 ALIGNMENT 53 Y12-5p01.q1k chr06 225 281 2990 3046 F 57 98.25 1103 reject_low 16 ALIGNMENT 53 Y12-5p01.q1k chr13 225 281 3829 3885 F 57 98.25 1103 reject_low 20 ALIGNMENT 24 Y12-5p01.q1k chr12 133 162 9442 9471 F 30 93.33 1103 reject_low 11 ALIGNMENT 0 Y12-5p01.q1k chr06 163 224 2974 2989 F 62 0.00 1103 reject_low 16 ALIGNMENT 901 Y12-5p01.q1k chr07 1055 30 1085847 1086861 C 1026 96.78 1103 ambiguous_tel 6 ALIGNMENT 0 Y12-5p01.q1k chr08 163 224 3669 3684 F 62 0.00 1103 reject_low 18 ALIGNMENT 29 Y12-5p01.q1k chr05 414 448 4555 4589 F 35 94.29 1103 reject_low 9 ALIGNMENT 29 Y12-5p01.q1k chr12 448 414 1067094 1067128 C 35 94.29 1103 reject_low 10 ALIGNMENT 0 Y12-5p01.q1k chr12 282 883 4010 4010 F 602 0.00 1103 reject_low 13 ALIGNMENT 901 Y12-5p01.q1k chr16 30 1055 4016 5030 F 1026 96.78 1103 ambiguous_tel 8 ALIGNMENT 948 Y12-5p01.q1k chr09 30 1055 4495 5510 F 1026 98.34 1103 ambiguous_tel 0 ALIGNMENT 29 Y12-5p01.q1k chr08 80 112 3610 3642 F 33 96.97 1103 reject_low 18 ALIGNMENT 0 Y12-5p01.q1k chr08 59 79 3620 3609 F 21 0.00 1103 reject_low 18 ALIGNMENT 96 Y12-5p01.q1k chr02 884 1055 4212 4372 F 172 89.53 1103 reject_low 17 ALIGNMENT 0 Y12-5p01.q1k chr12 163 224 3937 3952 F 62 0.00 1103 reject_low 13,14 ALIGNMENT 29 Y12-5p01.q1k chr06 80 112 2915 2947 F 33 96.97 1103 reject_low 16 ALIGNMENT 0 Y12-5p01.q1k chr08 113 132 3643 3638 F 20 0.00 1103 reject_low 18 ALIGNMENT 0 Y12-5p01.q1k chr16 224 163 944225 944240 C 62 0.00 1103 reject_low 15 ALIGNMENT 0 Y12-5p01.q1k chr06 59 79 2925 2914 F 21 0.00 1103 reject_low 16 ALIGNMENT 0 Y12-5p01.q1k chr02 163 224 4138 4153 F 62 0.00 1103 reject_low 17 ALIGNMENT 29 Y12-5p01.q1k chr16 58 30 944290 944318 C 29 100.00 1103 reject_low 15 ALIGNMENT 29 Y12-5p01.q1k chr06 30 58 2896 2924 F 29 100.00 1103 reject_low 16 ALIGNMENT 29 Y12-5p01.q1k chr12 30 58 9394 9422 F 29 100.00 1103 reject_low 11 ALIGNMENT 0 Y12-5p01.q1k chr12 113 132 9446 9441 F 20 0.00 1103 reject_low 11 ALIGNMENT 0 Y12-5p01.q1k chr05 399 413 4559 4554 F 15 0.00 1103 reject_low 9 ALIGNMENT 922 Y12-5p01.q1k chr04 1055 30 1526941 1527955 C 1026 97.47 1103 ambiguous_tel 2 ALIGNMENT 361 Y12-5p01.q1k chr12 398 30 1067125 1067493 C 369 99.46 1103 reject_low 10 ALIGNMENT 29 Y12-5p01.q1k chr12 80 112 9413 9445 F 33 96.97 1103 reject_low 11 ALIGNMENT 0 Y12-5p01.q1k chr12 504 449 1067098 1067093 C 56 0.00 1103 reject_low 10 ALIGNMENT 922 Y12-5p01.q1k chr15 1055 30 1086106 1087120 C 1026 97.47 1103 ambiguous_tel 4 ALIGNMENT 364 Y12-5p01.q1k chr05 30 398 4190 4558 F 369 99.73 1103 reject_low 9 ALIGNMENT 0 Y12-5p01.q1k chr12 113 132 3911 3906 F 20 0.00 1103 reject_low 12,13,14 ALIGNMENT 0 Y12-5p01.q1k chr06 113 132 2948 2943 F 20 0.00 1103 reject_low 16 ALIGNMENT 948 Y12-5p01.q1k chr10 30 1055 4478 5493 F 1026 98.34 1103 ambiguous_tel 1 ALIGNMENT 29 Y12-5p01.q1k chr16 112 80 944267 944299 C 33 96.97 1103 reject_low 15 ALIGNMENT 901 Y12-5p01.q1k chr05 1055 30 571770 572784 C 1026 96.78 1103 ambiguous_tel 5 ALIGNMENT 0 Y12-5p01.q1k chr05 449 504 4590 4585 F 56 0.00 1103 reject_low 9 ALIGNMENT 0 Y12-5p01.q1k chr13 59 79 3764 3753 F 21 0.00 1103 reject_low 20 ALIGNMENT 29 Y12-5p01.q1k chr02 30 58 4060 4088 F 29 100.00 1103 reject_low 17 ALIGNMENT 26 Y12-5p01.q1k chr13 30 58 3735 3763 F 29 96.55 1103 reject_low 20 ALIGNMENT 0 Y12-5p01.q1k chr16 883 282 944167 944167 C 602 0.00 1103 reject_low 15 ALIGNMENT 53 Y12-5p01.q1k chr12 225 281 3953 4009 F 57 98.25 1103 reject_low 13,14 ALIGNMENT 0 Y12-5p01.q1k chr12 163 836 9471 9470 F 674 0.00 1103 reject_low 11 ALIGNMENT 97 Y12-5p01.q1k chr06 886 1055 3050 3208 F 170 90.00 1103 reject_low 16 ALIGNMENT 99 Y12-5p01.q1k chr12 884 1055 9546 9706 F 172 90.12 1103 reject_low 14 ALIGNMENT 0 Y12-5p01.q1k chr12 163 224 3937 9487 F 62 0.00 1103 reject_low 12 ALIGNMENT 96 Y12-5p01.q1k chr08 1055 884 558459 558619 C 172 89.53 1103 reject_low 19 ALIGNMENT 0 Y12-5p01.q1k chr13 113 132 3787 3782 F 20 0.00 1103 reject_low 20 ALIGNMENT 0 Y12-5p01.q1k chr12 413 399 1067129 1067124 C 15 0.00 1103 reject_low 10 ALIGNMENT 0 Y12-5p01.q1k chr08 224 163 558678 558693 C 62 0.00 1103 reject_low 19 ALIGNMENT 24 Y12-5p01.q1k chr16 162 133 944241 944270 C 30 93.33 1103 reject_low 15 ALIGNMENT 922 Y12-5p01.q1k chr12 1055 30 1073142 1074156 C 1026 97.47 1103 ambiguous_tel 3 ALIGNMENT 0 Y12-5p01.q1k chr02 113 132 4112 4107 F 20 0.00 1103 reject_low 17 ALIGNMENT 53 Y12-5p01.q1k chr08 225 281 3685 3741 F 57 98.25 1103 reject_low 18 ALIGNMENT 0 Y12-5p01.q1k chr02 282 883 4211 4211 F 602 0.00 1103 reject_low 17 ALIGNMENT 0 Y12-5p01.q1k chr16 132 113 944271 944266 C 20 0.00 1103 reject_low 15 ALIGNMENT 0 Y12-5p01.q1k chr13 163 224 3813 3828 F 62 0.00 1103 reject_low 20 ALIGNMENT 99 Y12-5p01.q1k chr16 1055 884 944006 944166 C 172 90.12 1103 reject_low 15 ALIGNMENT 96 Y12-5p01.q1k chr08 884 1055 3743 3903 F 172 89.53 1103 reject_low 18 ALIGNMENT 29 Y12-5p01.q1k chr13 80 112 3754 3786 F 33 96.97 1103 reject_low 20 ALIGNMENT 24 Y12-5p01.q1k chr12 133 162 3907 3936 F 30 93.33 1103 reject_low 12,13,14 ALIGNMENT 24 Y12-5p01.q1k chr08 162 133 558694 558723 C 30 93.33 1103 reject_low 19 ALIGNMENT 0 Y12-5p01.q1k chr16 79 59 944300 944289 C 21 0.00 1103 reject_low 15 ALIGNMENT 53 Y12-5p01.q1k chr08 281 225 558621 558677 C 57 98.25 1103 reject_low 19 ALIGNMENT 0 Y12-5p01.q1k chr12 282 883 4010 9545 F 602 0.00 1103 reject_low 14 ALIGNMENT 984 Y12-5p04.q1k chr07 29 1122 299041 300128 F 1094 97.71 1253 accept 0 ALIGNMENT 889 Y12-5p04.p1k chr07 1230 34 302382 303590 C 1197 92.56 1291 accept 0 ALIGNMENT 811 Y12-5p05.p1k chr12 1287 236 461453 462506 C 1052 92.78 1364 accept 0 ALIGNMENT 811 Y12-5p05.p1k chr12 1287 236 452316 453369 C 1052 92.78 1364 reject_low 2 ALIGNMENT 940 Y12-5p05.q1k chr12 33 1131 467032 468126 F 1099 96.63 1240 reject_low 1 ALIGNMENT 940 Y12-5p05.q1k chr12 33 1131 457895 458989 F 1099 96.63 1240 accept 0 ALIGNMENT 953 Y12-5p06.p1k chr07 20 1181 997193 998376 F 1162 95.35 1313 accept 0 ALIGNMENT 1073 Y12-5p06.q1k chr07 1259 35 1001030 1002252 C 1225 96.57 1259 accept 0 ALIGNMENT 877 Y12-5p06.q1k chr08 1234 40 451449 452642 C 1195 91.88 1259 reject_low 1 ALIGNMENT 821 Y12-5p07.p1k chr11 1229 74 475292 476457 C 1156 91.44 1314 accept 0 ALIGNMENT 999 Y12-5p07.q1k chr11 33 1227 472344 473525 F 1195 96.15 1263 accept 0 ALIGNMENT 1026 Y12-5p08.q1k chr12 35 1261 187716 188942 F 1227 96.09 1263 accept 0 ALIGNMENT 1000 Y12-5p08.p1k chr12 1196 25 190524 191695 C 1172 96.08 1328 accept 0 ALIGNMENT 0 Y12-5p09.p1k chr07 272 381 423987 423986 F 110 0.00 1329 reject_low 1 ALIGNMENT 758 Y12-5p09.p1k chr07 201 1171 208847 209819 F 971 93.31 1329 reject_bad_break 0 ALIGNMENT 870 Y12-5p09.q1k chr07 1022 28 211786 212764 C 995 97.49 1253 reject_bad_break 0 ALIGNMENT 0 Y12-5p09.p1k chr07 1172 1257 209820 209898 F 86 0.00 1329 reject_bad_break 0 ALIGNMENT 23 Y12-5p09.p1k chr07 1258 1325 209899 209967 F 68 80.88 1329 reject_bad_break 0 ALIGNMENT 195 Y12-5p09.p1k chr07 382 1019 423987 424624 F 638 77.43 1329 reject_low 1 ALIGNMENT 1035 Y12-5p10.p1k chr02 1278 20 442631 443894 C 1259 95.71 1322 accept 0 ALIGNMENT 975 Y12-5p10.q1k chr02 33 1195 438252 439403 F 1163 96.99 1211 accept 0 ALIGNMENT 986 Y12-5p11.q1k chr08 34 1240 407107 408289 F 1207 96.19 1295 accept 0 ALIGNMENT 956 Y12-5p11.p1k chr08 1225 24 410597 411783 C 1202 95.42 1361 accept 0 ALIGNMENT 905 Y12-5p12.p1k chr03 31 1262 157814 159044 F 1232 92.13 1313 accept 0 ALIGNMENT 950 Y12-5p12.q1k chr03 1169 29 158874 160004 C 1141 95.88 1302 accept 0 ALIGNMENT 769 Y12-5p13.p1k chr05 202 1125 228451 229382 F 924 95.13 1324 accept 0 ALIGNMENT 946 Y12-5p13.q1k chr05 1159 28 232009 233138 C 1132 95.94 1263 accept 0 ALIGNMENT 1001 Y12-5p14.q1k chr16 30 1273 525091 526336 F 1244 94.29 1275 accept 0 ALIGNMENT 765 Y12-5p14.p1k chr16 1192 228 528415 529376 C 965 94.82 1367 accept 0 ALIGNMENT 939 Y12-5p15.q1k chr10 29 1127 530000 531087 F 1099 96.54 1235 accept 0 ALIGNMENT 948 Y12-5p15.p1k chr10 1191 25 533173 534338 C 1167 95.29 1295 accept 0 ALIGNMENT 881 Y12-5p16.p1k chr16 1207 72 122238 123351 C 1136 94.37 1334 accept 0 ALIGNMENT 991 Y12-5p16.q1k chr16 29 1219 117697 118899 F 1191 95.80 1229 accept 0 ALIGNMENT 959 Y12-5p17.q1k chr04 1207 35 826146 827308 C 1173 95.99 1231 accept 0 ALIGNMENT 979 Y12-5p17.p1k chr04 31 1194 823304 824475 F 1164 96.22 1237 accept 0 ALIGNMENT 1002 Y12-5p20.q1k chr14 1253 32 730728 731937 C 1222 95.91 1259 accept 0 ALIGNMENT 805 Y12-5p20.p1k chr14 197 1177 727756 728744 F 981 95.41 1269 accept 0 ALIGNMENT 0 Y12-5p21.q1k chr08 350 62 554708 554707 C 289 0.00 1249 reject_low 1 ALIGNMENT 0 Y12-5p21.q1k chr08 787 604 554456 554455 C 184 0.00 1249 reject_low 1 ALIGNMENT 912 Y12-5p21.q1k chr13 28 1052 163538 164560 F 1025 97.66 1249 accept 0 ALIGNMENT 66 Y12-5p21.q1k chr08 603 351 554455 554707 C 253 75.89 1249 reject_low 1 ALIGNMENT 747 Y12-5p21.p1k chr13 1154 294 166496 167353 C 861 96.28 1271 accept 0 ALIGNMENT 751 Y12-5p23.p1k chr08 1133 181 317777 318729 C 953 94.02 1203 accept 0 ALIGNMENT 968 Y12-5p23.q1k chr08 35 1148 313759 314870 F 1114 96.59 1200 accept 0 ALIGNMENT 677 Y12-5p24.p1k chr15 1189 284 1001711 1002608 C 906 93.49 1249 accept 0 ALIGNMENT 866 Y12-5p24.q1k chr15 33 1046 999781 1000777 F 1014 97.24 1256 accept 0 ALIGNMENT 885 Y12-6a01.p1k chr07 17 1047 218166 219187 F 1031 97.28 1127 accept 0 ALIGNMENT 1038 Y12-6a01.q1k chr07 1252 36 221930 223150 C 1217 95.81 1326 accept 0 ALIGNMENT 989 Y12-6a03.p1k chr04 1171 23 1229376 1230526 C 1149 96.34 1281 accept 0 ALIGNMENT 528 Y12-6a03.q1k chr04 142 723 1226052 1226630 F 582 97.59 1366 accept 0 ALIGNMENT 838 Y12-6a04.q1k chr05 936 30 411193 412097 C 907 98.24 1435 accept 0 ALIGNMENT 0 Y12-6a04.q1k chr05 759 734 411227 411226 C 26 0.00 1435 reject_low 1 ALIGNMENT 494 Y12-6a04.p1k chr05 12 592 407223 407800 F 581 96.73 1390 accept 0 ALIGNMENT 0 Y12-6a04.q1k chr05 686 62 411273 411272 C 625 0.00 1435 reject_low 1 ALIGNMENT 22 Y12-6a04.q1k chr05 733 687 411226 411272 C 47 82.98 1435 reject_low 1 ALIGNMENT 48 Y12-6a05.q1k chr03 980 904 168290 168367 C 77 88.31 1307 reject_low 1 ALIGNMENT 0 Y12-6a05.q1k chr10 646 62 537735 537734 C 585 0.00 1307 reject_low 25 ALIGNMENT 41 Y12-6a05.q1k chr14 452 708 519215 519476 F 257 75.88 1307 reject_low 17 ALIGNMENT 0 Y12-6a05.q1k chr11 516 62 517310 517309 C 455 0.00 1307 reject_low 10 ALIGNMENT 0 Y12-6a05.q1k chr01 859 709 160261 160260 C 151 0.00 1307 reject_low 13 ALIGNMENT 62 Y12-6a05.q1k chr07 517 708 535332 535525 F 192 79.69 1307 reject_low 9 ALIGNMENT 0 Y12-6a05.q1k chr15 709 859 595131 595130 F 151 0.00 1307 reject_low 8 ALIGNMENT 65 Y12-6a05.q1k chr14 708 517 96631 96824 C 192 80.21 1307 reject_low 6 ALIGNMENT 0 Y12-6a05.q1k chr10 660 62 354828 354827 C 599 0.00 1307 reject_low 26 ALIGNMENT 70 Y12-6a05.q1k chr03 452 709 149531 149787 F 258 79.07 1307 reject_low 3 ALIGNMENT 62 Y12-6a05.q1k chr13 708 517 362607 362800 C 192 79.69 1307 reject_low 12 ALIGNMENT 47 Y12-6a05.q1k chr04 900 966 520964 521031 F 67 91.04 1307 reject_low 27 ALIGNMENT 0 Y12-6a05.q1k chr10 62 591 483750 483749 F 530 0.00 1307 reject_low 22 ALIGNMENT 0 Y12-6a05.q1k chr10 859 709 354472 354471 C 151 0.00 1307 reject_low 19 ALIGNMENT 62 Y12-6a05.q1k chr13 708 517 357025 357218 C 192 79.69 1307 reject_low 11 ALIGNMENT 68 Y12-6a05.q1k chr02 517 708 259693 259886 F 192 80.73 1307 reject_low 4 ALIGNMENT 0 Y12-6a05.q1k chr14 709 859 525042 525041 F 151 0.00 1307 reject_low 18 ALIGNMENT 0 Y12-6a05.q1k chr14 62 451 519215 519214 F 390 0.00 1307 reject_low 17 ALIGNMENT 738 Y12-6a05.p1k chr04 21 851 640557 641386 F 831 97.35 1327 accept_trans 0 ALIGNMENT 65 Y12-6a05.q1k chr15 517 708 594938 595131 F 192 80.21 1307 reject_low 8 ALIGNMENT 0 Y12-6a05.q1k chr10 62 591 472578 472577 F 530 0.00 1307 reject_low 21 ALIGNMENT 0 Y12-6a05.q1k chr14 859 709 96632 96631 C 151 0.00 1307 reject_low 6 ALIGNMENT 0 Y12-6a05.q1k chr04 707 899 520779 520963 F 193 0.00 1307 reject_low 27 ALIGNMENT 0 Y12-6a05.q1k chr13 516 62 362801 362800 C 455 0.00 1307 reject_low 12 ALIGNMENT 0 Y12-6a05.q1k chr10 859 707 354784 354783 C 153 0.00 1307 reject_low 26 ALIGNMENT 0 Y12-6a05.q1k chr14 62 451 524781 524780 F 390 0.00 1307 reject_low 18 ALIGNMENT 0 Y12-6a05.q1k chr13 709 859 196647 196646 F 151 0.00 1307 reject_low 23 ALIGNMENT 41 Y12-6a05.q1k chr14 452 708 524781 525042 F 257 75.88 1307 reject_low 18 ALIGNMENT 0 Y12-6a05.q1k chr10 859 708 537676 537675 C 152 0.00 1307 reject_low 25 ALIGNMENT 0 Y12-6a05.q1k chr11 859 709 517117 517116 C 151 0.00 1307 reject_low 10 ALIGNMENT 0 Y12-6a05.q1k chr04 62 516 803017 803016 F 455 0.00 1307 reject_low 14 ALIGNMENT 0 Y12-6a05.q1k chr15 62 516 594938 594937 F 455 0.00 1307 reject_low 8 ALIGNMENT 0 Y12-6a05.q1k chr03 903 62 168368 168367 C 842 0.00 1307 reject_low 1 ALIGNMENT 51 Y12-6a05.q1k chr07 592 708 541553 541668 F 117 82.91 1307 reject_low 20 ALIGNMENT 0 Y12-6a05.q1k chr14 516 62 102407 102406 C 455 0.00 1307 reject_low 7 ALIGNMENT 71 Y12-6a05.q1k chr12 709 452 365831 366092 C 258 79.46 1307 reject_low 2 ALIGNMENT 0 Y12-6a05.q1k chr01 438 62 160538 160537 C 377 0.00 1307 reject_low 13 ALIGNMENT 0 Y12-6a05.q1k chr13 516 62 357219 357218 C 455 0.00 1307 reject_low 11 ALIGNMENT 24 Y12-6a05.q1k chr10 706 661 354783 354827 C 46 86.96 1307 reject_low 26 ALIGNMENT 58 Y12-6a05.q1k chr04 517 708 803017 803209 F 192 79.17 1307 reject_low 14 ALIGNMENT 0 Y12-6a05.q1k chr07 709 859 535525 535524 F 151 0.00 1307 reject_low 9 ALIGNMENT 0 Y12-6a05.q1k chr13 62 591 196532 196531 F 530 0.00 1307 reject_low 23 ALIGNMENT 39 Y12-6a05.q1k chr03 681 517 142794 142960 C 165 76.97 1307 reject_low 24 ALIGNMENT 51 Y12-6a05.q1k chr13 592 708 196532 196647 F 117 82.91 1307 reject_low 23 ALIGNMENT 0 Y12-6a05.q1k chr12 859 710 365832 365831 C 150 0.00 1307 reject_low 2 ALIGNMENT 65 Y12-6a05.q1k chr14 708 517 102213 102406 C 192 80.21 1307 reject_low 7 ALIGNMENT 0 Y12-6a05.q1k chr03 709 859 151827 151826 F 151 0.00 1307 reject_low 16 ALIGNMENT 0 Y12-6a05.q1k chr08 859 709 543632 543631 C 151 0.00 1307 reject_low 5 ALIGNMENT 0 Y12-6a05.q1k chr12 451 62 366093 366092 C 390 0.00 1307 reject_low 2 ALIGNMENT 0 Y12-6a05.q1k chr14 859 709 102214 102213 C 151 0.00 1307 reject_low 7 ALIGNMENT 0 Y12-6a05.q1k chr04 709 859 803209 803208 F 151 0.00 1307 reject_low 14 ALIGNMENT 0 Y12-6a05.q1k chr04 891 892 645231 651499 C 0 0.00 1307 accept_trans 0 ALIGNMENT 0 Y12-6a05.q1k chr03 859 709 124153 124152 C 151 0.00 1307 reject_low 15 ALIGNMENT 32 Y12-6a05.q1k chr04 439 706 520511 520778 F 268 73.88 1307 reject_low 27 ALIGNMENT 56 Y12-6a05.q1k chr03 708 517 124152 124345 C 192 78.65 1307 reject_low 15 ALIGNMENT 62 Y12-6a05.q1k chr11 708 517 517116 517309 C 192 79.69 1307 reject_low 10 ALIGNMENT 56 Y12-6a05.q1k chr03 517 708 151634 151827 F 192 78.65 1307 reject_low 16 ALIGNMENT 0 Y12-6a05.q1k chr02 62 516 259693 259692 F 455 0.00 1307 reject_low 4 ALIGNMENT 51 Y12-6a05.q1k chr10 592 708 472578 472693 F 117 82.91 1307 reject_low 21 ALIGNMENT 0 Y12-6a05.q1k chr07 709 859 541668 541667 F 151 0.00 1307 reject_low 20 ALIGNMENT 0 Y12-6a05.q1k chr10 516 62 354666 354665 C 455 0.00 1307 reject_low 19 ALIGNMENT 51 Y12-6a05.q1k chr10 592 708 483750 483865 F 117 82.91 1307 reject_low 22 ALIGNMENT 0 Y12-6a05.q1k chr03 516 62 142961 142960 C 455 0.00 1307 reject_low 24 ALIGNMENT 0 Y12-6a05.q1k chr14 709 859 519476 519475 F 151 0.00 1307 reject_low 17 ALIGNMENT 0 Y12-6a05.q1k chr08 516 62 543825 543824 C 455 0.00 1307 reject_low 5 ALIGNMENT 39 Y12-6a05.q1k chr01 708 439 160260 160537 C 270 74.81 1307 reject_low 13 ALIGNMENT 0 Y12-6a05.q1k chr13 859 709 357026 357025 C 151 0.00 1307 reject_low 11 ALIGNMENT 0 Y12-6a05.q1k chr07 62 516 535332 535331 F 455 0.00 1307 reject_low 9 ALIGNMENT 98 Y12-6a05.q1k chr04 1085 890 645037 645232 C 196 86.22 1307|0,2 accept_trans 0 ALIGNMENT 0 Y12-6a05.q1k chr10 709 859 472693 472692 F 151 0.00 1307 reject_low 21 ALIGNMENT 0 Y12-6a05.q1k chr02 709 859 259886 259885 F 151 0.00 1307 reject_low 4 ALIGNMENT 0 Y12-6a05.q1k chr14 516 62 96825 96824 C 455 0.00 1307 reject_low 6 ALIGNMENT 28 Y12-6a05.q1k chr10 707 647 537675 537734 C 61 85.25 1307 reject_low 25 ALIGNMENT 0 Y12-6a05.q1k chr03 859 682 142795 142794 C 178 0.00 1307 reject_low 24 ALIGNMENT 54 Y12-6a05.q1k chr10 708 517 354471 354665 C 192 78.65 1307 reject_low 19 ALIGNMENT 0 Y12-6a05.q1k chr04 62 438 520511 520510 F 377 0.00 1307 reject_low 27 ALIGNMENT 0 Y12-6a05.q1k chr03 516 62 124346 124345 C 455 0.00 1307 reject_low 15 ALIGNMENT 743 Y12-6a05.q1k chr04 892 27 651499 652364 C 866 97.11 1307|1,0 accept_trans 0 ALIGNMENT 0 Y12-6a05.q1k chr03 62 516 151634 151633 F 455 0.00 1307 reject_low 16 ALIGNMENT 0 Y12-6a05.q1k chr10 709 859 483865 483864 F 151 0.00 1307 reject_low 22 ALIGNMENT 0 Y12-6a05.q1k chr03 62 451 149531 149530 F 390 0.00 1307 reject_low 3 ALIGNMENT 0 Y12-6a05.q1k chr03 710 859 149787 149786 F 150 0.00 1307 reject_low 3 ALIGNMENT 0 Y12-6a05.q1k chr13 859 709 362608 362607 C 151 0.00 1307 reject_low 12 ALIGNMENT 65 Y12-6a05.q1k chr08 708 517 543631 543824 C 192 80.21 1307 reject_low 5 ALIGNMENT 0 Y12-6a05.q1k chr07 62 591 541553 541552 F 530 0.00 1307 reject_low 20 ALIGNMENT 0 Y12-6a06.p1k chr11 62 633 555256 555255 F 572 0.00 1252 reject_low 3 ALIGNMENT 45 Y12-6a06.q1k chr02 724 670 332826 332880 C 55 94.55 1361 reject_low 1 ALIGNMENT 809 Y12-6a06.q1k chr04 1011 29 491219 492229 C 983 94.71 1361 accept 0 ALIGNMENT 43 Y12-6a06.p1k chr10 1096 973 153522 153643 C 124 79.84 1252 reject_low 2 ALIGNMENT 1024 Y12-6a06.p1k chr04 21 1174 486831 487983 F 1154 97.83 1252 accept 0 ALIGNMENT 292 Y12-6a06.q1k chr02 365 35 333383 333713 C 331 96.37 1361 reject_low 1 ALIGNMENT 0 Y12-6a06.p1k chr11 824 972 555445 555594 F 149 0.00 1252 reject_low 3 ALIGNMENT 0 Y12-6a06.p1k chr10 972 824 153644 153793 C 149 0.00 1252 reject_low 2 ALIGNMENT 0 Y12-6a06.q1k chr02 669 366 332881 333382 C 304 0.00 1361 reject_low 1 ALIGNMENT 0 Y12-6a06.q1k chr02 814 725 332827 332826 C 90 0.00 1361 reject_low 1 ALIGNMENT 31 Y12-6a06.p1k chr10 823 634 153794 153982 C 190 75.26 1252 reject_low 2 ALIGNMENT 0 Y12-6a06.p1k chr10 633 62 153983 153982 C 572 0.00 1252 reject_low 2 ALIGNMENT 31 Y12-6a06.p1k chr11 634 823 555256 555444 F 190 74.21 1252 reject_low 3 ALIGNMENT 43 Y12-6a06.p1k chr11 973 1096 555595 555716 F 124 79.84 1252 reject_low 3 ALIGNMENT 635 Y12-6a07.p1k chr01 14 722 119276 119980 F 709 98.03 1357 accept 0 ALIGNMENT 901 Y12-6a07.q1k chr01 1034 35 121343 122341 C 1000 97.50 1356 accept 0 ALIGNMENT 896 Y12-6a08.q1k chr08 1024 32 466979 467964 C 993 98.29 1383 accept 0 ALIGNMENT 1008 Y12-6a08.p1k chr08 18 1204 461808 463007 F 1187 95.87 1218 accept 0 ALIGNMENT 0 Y12-6a09.p1k chr02 62 940 272533 272532 F 879 0.00 1244 reject_low 4 ALIGNMENT 29 Y12-6a09.p1k chr15 946 982 63056 63092 F 37 100.00 1244 reject_low 1 ALIGNMENT 0 Y12-6a09.p1k chr13 935 62 354233 354232 C 874 0.00 1244 reject_low 3 ALIGNMENT 21 Y12-6a09.p1k chr13 977 936 354191 354232 C 42 90.48 1244 reject_low 3 ALIGNMENT 0 Y12-6a09.p1k chr15 62 945 63056 63055 F 884 0.00 1244 reject_low 1 ALIGNMENT 23 Y12-6a09.p1k chr08 932 980 365356 365405 F 49 87.76 1244 reject_low 2 ALIGNMENT 1071 Y12-6a09.q1k chr11 29 1202 382652 383830 F 1174 97.27 1289 accept 0 ALIGNMENT 0 Y12-6a09.p1k chr08 62 931 365356 365355 F 870 0.00 1244 reject_low 2 ALIGNMENT 22 Y12-6a09.p1k chr02 941 971 272533 272563 F 31 96.77 1244 reject_low 4 ALIGNMENT 998 Y12-6a09.p1k chr11 1215 15 386555 387747 C 1201 96.09 1244 accept 0 ALIGNMENT 968 Y12-6a10.p1k chr09 1228 23 89172 90382 C 1206 95.44 1244 accept 0 ALIGNMENT 1001 Y12-6a10.q1k chr09 32 1211 85891 87069 F 1180 95.76 1359 accept 0 ALIGNMENT 1009 Y12-6a11.p1k chr14 1220 22 588003 589207 C 1199 95.83 1284 accept 0 ALIGNMENT 927 Y12-6a11.q1k chr14 40 1145 584837 585955 F 1106 95.39 1273 accept 0 ALIGNMENT 1050 Y12-6a12.q1k chr11 1146 36 262868 263977 C 1111 98.65 1357 accept 0 ALIGNMENT 1048 Y12-6a12.p1k chr11 18 1205 258047 259232 F 1188 96.80 1285 accept 0 ALIGNMENT 806 Y12-6a14.q1k chr15 1020 37 242246 243238 C 984 94.11 1278 accept 0 ALIGNMENT 966 Y12-6a14.p1k chr15 27 1187 238404 239557 F 1161 95.87 1276 accept 0 ALIGNMENT 52 Y12-6a16.q1k chr07 581 507 731137 731216 C 75 92.00 898 reject_low 2 ALIGNMENT 52 Y12-6a16.q1k chr12 496 569 975967 976043 F 74 90.54 898 reject_low 3 ALIGNMENT 50 Y12-6a16.q1k chr11 569 508 74638 74702 C 62 95.16 898 reject_low 9 ALIGNMENT 51 Y12-6a16.q1k chr14 569 507 632610 632675 C 63 95.24 898 reject_low 1 ALIGNMENT 0 Y12-6a16.q1k chr14 495 77 102802 102801 C 419 0.00 898 reject_low 4 ALIGNMENT 54 Y12-6a16.q1k chr15 569 500 487449 487521 C 70 92.86 898 reject_low 5 ALIGNMENT 52 Y12-6a16.q1k chr16 569 506 810681 810747 C 64 95.31 898 reject_low 6 ALIGNMENT 0 Y12-6a16.q1k chr15 506 77 228404 228403 C 430 0.00 898 reject_low 8 ALIGNMENT 0 Y12-6a16.q1k chr15 499 77 487522 487521 C 423 0.00 898 reject_low 5 ALIGNMENT 1008 Y12-6a16.p1k chr03 18 1232 121647 122861 F 1215 95.31 1252 accept 0 ALIGNMENT 427 Y12-6a16.q1k chr03 634 52 127645 128247 C 583 93.14 898 accept 0 ALIGNMENT 51 Y12-6a16.q1k chr15 569 507 228338 228403 C 63 95.24 898 reject_low 8 ALIGNMENT 0 Y12-6a16.q1k chr16 505 77 810748 810747 C 429 0.00 898 reject_low 6 ALIGNMENT 0 Y12-6a16.q1k chr14 506 77 632676 632675 C 430 0.00 898 reject_low 1 ALIGNMENT 0 Y12-6a16.p1k chr14 513 835 630823 630822 F 323 0.00 1252 reject_low 1 ALIGNMENT 133 Y12-6a16.p1k chr14 40 512 630351 630823 F 473 76.32 1252 reject_low 1 ALIGNMENT 51 Y12-6a16.q1k chr06 507 569 137480 137545 F 63 95.24 898 reject_low 7 ALIGNMENT 52 Y12-6a16.q1k chr14 569 496 102725 102801 C 74 90.54 898 reject_low 4 ALIGNMENT 0 Y12-6a16.q1k chr12 77 495 975967 975966 F 419 0.00 898 reject_low 3 ALIGNMENT 0 Y12-6a16.q1k chr11 507 77 74703 74702 C 431 0.00 898 reject_low 9 ALIGNMENT 0 Y12-6a16.q1k chr07 506 77 731217 731216 C 430 0.00 898 reject_low 2 ALIGNMENT 0 Y12-6a16.q1k chr06 77 506 137480 137479 F 430 0.00 898 reject_low 7 ALIGNMENT 0 Y12-6a17.q1k chr13 62 934 354176 354175 F 873 0.00 1301 reject_low 12 ALIGNMENT 0 Y12-6a17.p1k chr09 744 777 247035 247034 F 34 0.00 1298 reject_low 1 ALIGNMENT 30 Y12-6a17.q1k chr08 999 934 252923 252988 C 66 83.33 1301 reject_low 7 ALIGNMENT 0 Y12-6a17.q1k chr11 937 62 561433 561432 C 876 0.00 1301 reject_low 16 ALIGNMENT 41 Y12-6a17.q1k chr11 996 936 576141 576201 C 61 90.16 1301 reject_low 4 ALIGNMENT 26 Y12-6a17.q1k chr01 942 978 116481 116517 F 37 91.89 1301 reject_low 13 ALIGNMENT 47 Y12-6a17.q1k chr15 996 935 427979 428040 C 62 93.55 1301 reject_low 2 ALIGNMENT 0 Y12-6a17.q1k chr15 934 62 428041 428040 C 873 0.00 1301 reject_low 2 ALIGNMENT 0 Y12-6a17.q1k chr08 933 62 252989 252988 C 872 0.00 1301 reject_low 7 ALIGNMENT 0 Y12-6a17.q1k chr08 932 62 252966 252965 C 871 0.00 1301 reject_low 8 ALIGNMENT 0 Y12-6a17.q1k chr11 935 62 576202 576201 C 874 0.00 1301 reject_low 4 ALIGNMENT 201 Y12-6a17.p1k chr09 253 743 246547 247035 F 491 81.06 1298 reject_low 1 ALIGNMENT 27 Y12-6a17.q1k chr08 999 947 365437 365489 C 53 84.91 1301 reject_low 10 ALIGNMENT 0 Y12-6a17.p1k chr09 62 252 246547 246546 F 191 0.00 1298 reject_low 1 ALIGNMENT 0 Y12-6a17.q1k chr06 934 62 202500 202499 C 873 0.00 1301 reject_low 15 ALIGNMENT 0 Y12-6a17.q1k chr04 938 62 834047 834046 C 877 0.00 1301 reject_low 9 ALIGNMENT 0 Y12-6a17.q1k chr10 964 62 175689 175688 C 903 0.00 1301 reject_low 11 ALIGNMENT 34 Y12-6a17.q1k chr04 984 939 834001 834046 C 46 93.48 1301 reject_low 9 ALIGNMENT 28 Y12-6a17.q1k chr08 999 933 252899 252965 C 67 82.09 1301 reject_low 8 ALIGNMENT 0 Y12-6a17.q1k chr08 937 62 365460 365459 C 876 0.00 1301 reject_low 5 ALIGNMENT 23 Y12-6a17.q1k chr06 962 935 202472 202499 C 28 96.43 1301 reject_low 15 ALIGNMENT 41 Y12-6a17.q1k chr15 999 938 427901 427962 C 62 90.32 1301 reject_low 3 ALIGNMENT 0 Y12-6a17.q1k chr01 62 941 116481 116480 F 880 0.00 1301 reject_low 13 ALIGNMENT 35 Y12-6a17.q1k chr08 987 935 365368 365420 C 53 90.57 1301 reject_low 6 ALIGNMENT 23 Y12-6a17.q1k chr11 987 935 576114 576166 C 53 83.02 1301 reject_low 14 ALIGNMENT 22 Y12-6a17.q1k chr11 961 938 561409 561432 C 24 100.00 1301 reject_low 16 ALIGNMENT 0 Y12-6a17.q1k chr08 946 62 365490 365489 C 885 0.00 1301 reject_low 10 ALIGNMENT 0 Y12-6a17.q1k chr15 937 62 427963 427962 C 876 0.00 1301 reject_low 3 ALIGNMENT 26 Y12-6a17.q1k chr13 935 978 354176 354219 F 44 88.64 1301 reject_low 12 ALIGNMENT 38 Y12-6a17.q1k chr08 999 938 365398 365459 C 62 88.71 1301 reject_low 5 ALIGNMENT 0 Y12-6a17.q1k chr11 934 62 576167 576166 C 873 0.00 1301 reject_low 14 ALIGNMENT 832 Y12-6a17.p1k chr07 999 24 74439 75405 C 976 96.21 1298 accept 0 ALIGNMENT 23 Y12-6a17.q1k chr10 997 965 175656 175688 C 33 90.91 1301 reject_low 11 ALIGNMENT 908 Y12-6a17.q1k chr07 40 1101 69251 70328 F 1062 96.23 1301 accept 0 ALIGNMENT 0 Y12-6a17.q1k chr08 934 62 365421 365420 C 873 0.00 1301 reject_low 6 ALIGNMENT 861 Y12-6a18.p1k chr12 21 956 463110 464042 F 936 98.08 1304 accept 1 ALIGNMENT 937 Y12-6a18.q1k chr12 1179 25 466359 467521 C 1155 94.63 1335 accept 1 ALIGNMENT 861 Y12-6a18.p1k chr12 21 956 453973 454905 F 936 98.08 1304 accept 0 ALIGNMENT 937 Y12-6a18.q1k chr12 1179 25 457222 458384 C 1155 94.63 1335 accept 0 ALIGNMENT 1045 Y12-6a19.p1k chr12 1221 21 969687 970891 C 1201 96.84 1221 accept 0 ALIGNMENT 1046 Y12-6a19.q1k chr12 35 1223 966024 967208 F 1189 96.97 1296 accept 0 ALIGNMENT 919 Y12-6a21.q1k chr11 35 1067 328167 329197 F 1033 97.39 1354 accept 0 ALIGNMENT 1029 Y12-6a21.p1k chr11 1173 22 331223 332375 C 1152 97.92 1173 accept 0 ALIGNMENT 999 Y12-6a22.p1k chr14 1158 24 189129 190258 C 1135 96.92 1166 accept 0 ALIGNMENT 662 Y12-6a22.q1k chr14 28 820 186485 187282 F 793 95.33 1377 accept 0 ALIGNMENT 992 Y12-6a23.p1k chr15 1167 73 498376 499470 C 1095 98.36 1171 accept 0 ALIGNMENT 1091 Y12-6a23.q1k chr15 35 1194 494554 495713 F 1160 98.36 1194 accept 0 ALIGNMENT 507 Y12-6a24.q1k chr02 593 29 460276 460840 C 565 97.52 1326 accept 0 ALIGNMENT 1026 Y12-6a24.p1k chr02 24 1166 455848 456991 F 1143 97.20 1168 accept 0 ALIGNMENT 702 Y12-6b01.q1k chr12 793 25 385105 385874 C 769 98.44 1513 accept 0 ALIGNMENT 508 Y12-6b01.p1k chr12 36 638 381128 381728 F 603 95.69 1305 accept 0 ALIGNMENT 594 Y12-6b02.q1k chr16 849 32 488650 489456 C 818 93.03 1438 accept 0 ALIGNMENT 352 Y12-6b03.p1k chr15 463 1 721018 721475 C 463 93.52 659 accept 0 ALIGNMENT 1001 Y12-6b03.q1k chr15 34 1254 719506 720741 F 1221 94.92 1384 accept 0 ALIGNMENT 438 Y12-6b04.p1k chr07 1205 24 481167 482360 C 1182 79.70 1242 reject_low 1 ALIGNMENT 1018 Y12-6b04.q1k chr16 1180 34 488301 489459 C 1147 97.65 1313 accept 0 ALIGNMENT 1019 Y12-6b04.p1k chr16 20 1231 483234 484458 F 1212 95.38 1242 accept 0 ALIGNMENT 987 Y12-6b05.q1k chr05 32 1107 224705 225776 F 1076 98.14 1405 accept 0 ALIGNMENT 965 Y12-6b05.p1k chr05 1132 22 229088 230191 C 1111 96.22 1238 accept 0 ALIGNMENT 995 Y12-6b06.p1k chr11 1195 20 291037 292206 C 1176 96.43 1232 accept 0 ALIGNMENT 632 Y12-6b07.q1k chr14 695 31 349792 350454 C 665 98.80 1379 accept 0 ALIGNMENT 678 Y12-6b07.p1k chr14 14 787 344084 344855 F 774 97.29 1289 accept 0 ALIGNMENT 253 Y12-6b07.p1k chr08 36 739 373163 373865 F 704 79.83 1289 reject_low 1 ALIGNMENT 0 Y12-6b07.p1k chr05 680 559 405372 405371 C 122 0.00 1289 reject_low 2 ALIGNMENT 0 Y12-6b07.p1k chr05 314 62 405615 405614 C 253 0.00 1289 reject_low 2 ALIGNMENT 82 Y12-6b07.p1k chr05 558 315 405371 405614 C 244 79.10 1289 reject_low 2 ALIGNMENT 758 Y12-6b09.p1k chr12 916 15 302796 303695 C 902 96.67 1269 accept 0 ALIGNMENT 1027 Y12-6b09.q1k chr12 35 1298 298977 300223 F 1264 95.17 1389 accept 0 ALIGNMENT 0 Y12-6b10.p1k chr12 449 683 490543 490542 F 235 0.00 1235 reject_low 2 ALIGNMENT 954 Y12-6b10.p1k chr12 27 1161 461288 462423 F 1135 95.51 1235 accept 1 ALIGNMENT 954 Y12-6b10.p1k chr12 27 1161 452151 453286 F 1135 95.51 1235 accept 0 ALIGNMENT 402 Y12-6b10.p1k chr12 27 448 490119 490543 F 422 98.82 1235 reject_low 2 ALIGNMENT 32 Y12-6b11.q1k chr13 745 833 86951 87039 F 89 80.90 1346 reject_low 1 ALIGNMENT 20 Y12-6b11.q1k chr13 754 798 668255 668299 F 45 95.56 1346 reject_low 8 ALIGNMENT 0 Y12-6b11.q1k chr13 62 753 668255 668254 F 692 0.00 1346 reject_low 8 ALIGNMENT 0 Y12-6b11.q1k chr10 748 62 470094 470093 C 687 0.00 1346 reject_low 7 ALIGNMENT 23 Y12-6b11.q1k chr13 751 829 587629 587707 F 79 78.48 1346 reject_low 6 ALIGNMENT 0 Y12-6b11.q1k chr13 62 744 587644 587643 F 683 0.00 1346 reject_low 2 ALIGNMENT 0 Y12-6b11.q1k chr13 62 750 587629 587628 F 689 0.00 1346 reject_low 6 ALIGNMENT 712 Y12-6b11.q1k chr16 34 833 649757 650555 F 800 97.62 1346 accept 0 ALIGNMENT 0 Y12-6b11.q1k chr12 62 744 701182 701181 F 683 0.00 1346 reject_low 3 ALIGNMENT 29 Y12-6b11.q1k chr12 745 833 701182 701270 F 89 79.78 1346 reject_low 3 ALIGNMENT 29 Y12-6b11.q1k chr09 809 748 105766 105827 C 62 93.55 1346 reject_low 5 ALIGNMENT 0 Y12-6b11.q1k chr13 62 744 86951 86950 F 683 0.00 1346 reject_low 1 ALIGNMENT 33 Y12-6b11.q1k chr13 745 829 587644 587728 F 85 82.35 1346 reject_low 2 ALIGNMENT 0 Y12-6b11.q1k chr15 758 62 1037567 1037566 C 697 0.00 1346 reject_low 4 ALIGNMENT 959 Y12-6b11.p1k chr16 1176 20 653581 654742 C 1157 95.85 1269 accept 0 ALIGNMENT 29 Y12-6b11.q1k chr15 832 759 1037493 1037566 C 74 79.73 1346 reject_low 4 ALIGNMENT 22 Y12-6b11.q1k chr10 805 749 470037 470093 C 57 94.74 1346 reject_low 7 ALIGNMENT 0 Y12-6b11.q1k chr09 747 62 105828 105827 C 686 0.00 1346 reject_low 5 ALIGNMENT 948 Y12-6b12.q1k chr07 34 1140 301333 302440 F 1107 96.75 1301 accept_chi 0 ALIGNMENT 798 Y12-6b12.p1k chr15 980 21 1051165 1052122 C 960 95.10 1310 accept_chi 1 ALIGNMENT 713 Y12-6b14.p1k chr16 14 841 170234 171060 F 828 96.74 1362 accept 0 ALIGNMENT 934 Y12-6b16.p1k chr08 1237 23 291047 292261 C 1215 93.58 1243 accept 0 ALIGNMENT 0 Y12-6b16.p1k chr10 757 835 27993 27992 F 79 0.00 1243 reject_low 8 ALIGNMENT 942 Y12-6b16.q1k chr08 35 1089 285799 286857 F 1055 97.35 1362 accept 0 ALIGNMENT 293 Y12-6b16.p1k chr04 1116 23 1159850 1160945 C 1094 76.69 1243 reject_low 3 ALIGNMENT 0 Y12-6b16.p1k chr12 374 835 290948 290947 F 462 0.00 1243 reject_low 7 ALIGNMENT 279 Y12-6b16.p1k chr08 1111 23 287339 288429 C 1089 76.68 1243 reject_low 4 ALIGNMENT 497 Y12-6b16.p1k chr04 1116 23 1163199 1164294 C 1094 82.72 1243 reject_low 1 ALIGNMENT 0 Y12-6b16.p1k chr15 441 642 26045 26246 F 202 0.00 1243 reject_low 9 ALIGNMENT 226 Y12-6b16.p1k chr08 991 67 295051 295976 C 925 75.89 1243 reject_low 5 ALIGNMENT 62 Y12-6b16.p1k chr15 23 440 25627 26044 F 418 72.73 1243 reject_low 9 ALIGNMENT 293 Y12-6b16.p1k chr04 1116 23 1154458 1155553 C 1094 76.69 1243 reject_low 2 ALIGNMENT 20 Y12-6b16.p1k chr08 1112 1047 294929 294994 C 66 78.79 1243 reject_low 5 ALIGNMENT 0 Y12-6b16.p1k chr10 447 640 27684 27877 F 194 0.00 1243 reject_low 8 ALIGNMENT 0 Y12-6b16.p1k chr08 1046 992 294995 295050 C 55 0.00 1243 reject_low 5 ALIGNMENT 34 Y12-6b16.p1k chr15 643 743 26247 26347 F 101 79.21 1243 reject_low 9 ALIGNMENT 64 Y12-6b16.p1k chr10 301 446 27538 27683 F 146 82.88 1243 reject_low 8 ALIGNMENT 50 Y12-6b16.p1k chr10 641 756 27878 27993 F 116 82.76 1243 reject_low 8 ALIGNMENT 90 Y12-6b16.p1k chr13 25 1004 288420 289400 F 980 70.71 1243 reject_low 6 ALIGNMENT 0 Y12-6b16.p1k chr10 62 300 27538 27537 F 239 0.00 1243 reject_low 8 ALIGNMENT 91 Y12-6b16.p1k chr12 25 373 290600 290948 F 349 77.08 1243 reject_low 7 ALIGNMENT 0 Y12-6b16.p1k chr15 744 835 26347 26346 F 92 0.00 1243 reject_low 9 ALIGNMENT 919 Y12-6b17.p1k chr07 1100 22 994263 995339 C 1079 96.20 1267 accept 0 ALIGNMENT 1026 Y12-6b17.q1k chr07 33 1257 991114 992332 F 1225 95.92 1376 accept 0 ALIGNMENT 888 Y12-6b18.p1k chr04 1072 15 740825 741866 C 1058 96.50 1279 accept 0 ALIGNMENT 883 Y12-6b19.q1k chr07 32 1023 662298 663298 F 992 97.98 1285 accept 0 ALIGNMENT 977 Y12-6b20.q1k chr07 34 1205 340575 341745 F 1172 95.82 1316 accept 0 ALIGNMENT 812 Y12-6b20.p1k chr07 970 16 343626 344572 C 955 97.17 1267 accept 0 ALIGNMENT 976 Y12-6b22.p1k chr13 21 1168 536608 537760 F 1148 96.34 1168 accept 0 ALIGNMENT 773 Y12-6b24.p1k chr12 19 1156 1065242 1066331 F 1138 92.09 1156 reject_low 13 ALIGNMENT 864 Y12-6b24.q1k chr02 30 1004 2469 3441 F 975 97.03 1254 reject_low 12 ALIGNMENT 872 Y12-6b24.q1k chr05 1004 30 573868 574838 C 975 97.23 1254 reject_low 5 ALIGNMENT 895 Y12-6b24.q1k chr10 28 1004 2422 3394 F 977 97.95 1254 ambiguous_tel 0 ALIGNMENT 0 Y12-6b24.p1k chr16 62 214 942804 942803 F 153 0.00 1156 reject_low 16 ALIGNMENT 0 Y12-6b24.p1k chr08 200 62 4997 4996 C 139 0.00 1156 reject_low 18 ALIGNMENT 881 Y12-6b24.p1k chr12 1156 35 4430 5545 C 1122 94.39 1156 reject_low 10 ALIGNMENT 872 Y12-6b24.q1k chr07 1004 30 1087945 1088915 C 975 97.23 1254 reject_low 2 ALIGNMENT 940 Y12-6b24.p1k chr14 1156 35 5380 6501 C 1122 95.72 1156 reject_low 3 ALIGNMENT 818 Y12-6b24.p1k chr02 1156 35 4631 5730 C 1122 92.96 1156 reject_low 12 ALIGNMENT 883 Y12-6b24.q1k chr05 28 1004 2115 3087 F 977 97.54 1254 reject_low 17 ALIGNMENT 881 Y12-6b24.p1k chr13 1156 35 4306 5421 C 1122 94.39 1156 reject_low 9 ALIGNMENT 889 Y12-6b24.p1k chr12 35 1156 1071767 1072883 F 1122 94.39 1156 reject_low 7 ALIGNMENT 1018 Y12-6b24.p1k chr10 1156 23 5752 6886 C 1134 97.62 1156 ambiguous_tel 0 ALIGNMENT 813 Y12-6b24.p1k chr08 35 1156 557102 558200 F 1122 92.69 1156 reject_low 14 ALIGNMENT 940 Y12-6b24.p1k chr16 1156 35 5289 6410 C 1122 95.72 1156 reject_low 4 ALIGNMENT 872 Y12-6b24.q1k chr16 30 1004 1962 2932 F 975 97.23 1254 reject_low 4 ALIGNMENT 872 Y12-6b24.q1k chr12 30 1004 2270 3240 F 975 97.23 1254 reject_low 10 ALIGNMENT 940 Y12-6b24.p1k chr07 35 1156 1084467 1085588 F 1122 95.54 1156 reject_low 2 ALIGNMENT 805 Y12-6b24.p1k chr16 215 1156 942804 943746 F 942 96.07 1156 reject_low 16 ALIGNMENT 864 Y12-6b24.q1k chr08 1004 30 559390 560362 C 975 97.03 1254 reject_low 14 ALIGNMENT 1018 Y12-6b24.p1k chr09 1156 23 5769 6903 C 1134 97.62 1156 ambiguous_tel 1 ALIGNMENT 872 Y12-6b24.q1k chr14 30 1004 2053 3023 F 975 97.23 1254 reject_low 3 ALIGNMENT 889 Y12-6b24.p1k chr04 35 1156 1525566 1526682 F 1122 94.39 1156 reject_low 6 ALIGNMENT 0 Y12-6b24.p1k chr08 362 226 4952 4971 C 137 0.00 1156 reject_low 18 ALIGNMENT 856 Y12-6b24.p1k chr06 1156 36 3468 4567 C 1121 93.93 1156 reject_low 15 ALIGNMENT 678 Y12-6b24.p1k chr05 1090 103 5400 6338 C 988 92.41 1156 reject_low 17 ALIGNMENT 0 Y12-6b24.p1k chr05 102 62 6339 6338 C 41 0.00 1156 reject_low 17 ALIGNMENT 869 Y12-6b24.q1k chr12 1004 30 1068577 1069547 C 975 97.13 1254 reject_low 13 ALIGNMENT 869 Y12-6b24.q1k chr12 1004 30 1075240 1076210 C 975 97.13 1254 reject_low 7 ALIGNMENT 871 Y12-6b24.p1k chr05 19 1085 570413 571459 F 1067 95.69 1156 reject_low 5 ALIGNMENT 869 Y12-6b24.q1k chr04 1004 30 1529039 1530009 C 975 97.13 1254 reject_low 6 ALIGNMENT 889 Y12-6b24.p1k chr15 35 1156 1084731 1085847 F 1122 94.39 1156 reject_low 8 ALIGNMENT 814 Y12-6b24.q1k chr06 30 1004 1324 2277 F 975 95.90 1254 reject_low 15 ALIGNMENT 881 Y12-6b24.p1k chr12 1156 35 9965 11080 C 1122 94.39 1156 reject_low 11 ALIGNMENT 875 Y12-6b24.q1k chr13 30 1004 2146 3116 F 975 97.33 1254 reject_low 9 ALIGNMENT 892 Y12-6b24.q1k chr09 28 1004 2439 3411 F 977 97.85 1254 ambiguous_tel 1 ALIGNMENT 872 Y12-6b24.q1k chr12 30 1004 7805 8775 F 975 97.23 1254 reject_low 11 ALIGNMENT 841 Y12-6b24.q1k chr08 28 1004 1996 2972 F 977 96.21 1254 reject_low 18 ALIGNMENT 22 Y12-6b24.p1k chr08 225 201 4972 4996 C 25 96.00 1156 reject_low 18 ALIGNMENT 872 Y12-6b24.q1k chr16 1004 30 944937 945907 C 975 97.23 1254 reject_low 16 ALIGNMENT 597 Y12-6b24.p1k chr08 1156 363 4162 4951 C 794 93.45 1156 reject_low 18 ALIGNMENT 869 Y12-6b24.q1k chr15 1004 30 1088204 1089174 C 975 97.13 1254 reject_low 8 ALIGNMENT 844 Y12-6c02.q1k chr11 31 1053 366894 367938 F 1023 95.60 1335 accept 0 ALIGNMENT 690 Y12-6c02.p1k chr11 1170 280 370098 370997 C 891 93.38 1217 accept 0 ALIGNMENT 0 Y12-6c03.q1k chr07 62 215 845653 845652 F 154 0.00 1419 reject_low 11 ALIGNMENT 80 Y12-6c03.q1k chr06 216 300 162221 162305 F 85 98.82 1419 reject_low 6 ALIGNMENT 0 Y12-6c03.q1k chr07 298 795 845734 845733 F 498 0.00 1419 reject_low 11 ALIGNMENT 0 Y12-6c03.q1k chr06 215 62 181038 181037 C 154 0.00 1419 reject_low 12 ALIGNMENT 72 Y12-6c03.q1k chr15 287 216 226609 226680 C 72 100.00 1419 reject_low 14 ALIGNMENT 0 Y12-6c03.q1k chr15 795 288 226610 226609 C 508 0.00 1419 reject_low 14 ALIGNMENT 76 Y12-6c03.q1k chr07 301 208 930944 931035 C 94 95.74 1419 reject_low 5 ALIGNMENT 75 Y12-6c03.q1k chr10 306 212 396624 396717 C 95 94.74 1419 reject_low 2 ALIGNMENT 0 Y12-6c03.q1k chr03 795 301 142686 142685 C 495 0.00 1419 reject_low 9 ALIGNMENT 0 Y12-6c03.q1k chr15 297 795 282242 282241 F 499 0.00 1419 reject_low 10 ALIGNMENT 71 Y12-6c03.q1k chr03 300 216 142685 142769 C 85 95.29 1419 reject_low 9 ALIGNMENT 0 Y12-6c03.q1k chr03 215 62 142770 142769 C 154 0.00 1419 reject_low 9 ALIGNMENT 0 Y12-6c03.q1k chr13 795 288 183899 183898 C 508 0.00 1419 reject_low 16 ALIGNMENT 0 Y12-6c03.q1k chr04 62 215 83548 83547 F 154 0.00 1419 reject_low 8 ALIGNMENT 0 Y12-6c03.q1k chr07 207 62 931036 931035 C 146 0.00 1419 reject_low 5 ALIGNMENT 0 Y12-6c03.q1k chr16 292 795 572340 572339 F 504 0.00 1419 reject_low 15 ALIGNMENT 74 Y12-6c03.q1k chr15 217 296 282164 282242 F 80 98.75 1419 reject_low 10 ALIGNMENT 0 Y12-6c03.q1k chr05 795 297 61881 61880 C 499 0.00 1419 reject_low 3 ALIGNMENT 0 Y12-6c03.q1k chr15 215 62 226681 226680 C 154 0.00 1419 reject_low 14 ALIGNMENT 0 Y12-6c03.q1k chr10 211 62 396718 396717 C 150 0.00 1419 reject_low 2 ALIGNMENT 72 Y12-6c03.q1k chr16 216 288 860374 860446 F 73 100.00 1419 reject_low 13 ALIGNMENT 0 Y12-6c03.q1k chr04 292 795 992900 992899 F 504 0.00 1419 reject_low 4 ALIGNMENT 0 Y12-6c03.q1k chr15 62 216 282164 282163 F 155 0.00 1419 reject_low 10 ALIGNMENT 0 Y12-6c03.q1k chr06 795 290 180965 180964 C 506 0.00 1419 reject_low 12 ALIGNMENT 696 Y12-6c03.p1k chr11 937 33 112598 113488 C 905 94.59 1326 accept_chi 0 ALIGNMENT 0 Y12-6c03.q1k chr06 62 215 162221 162220 F 154 0.00 1419 reject_low 6 ALIGNMENT 71 Y12-6c03.q1k chr02 303 216 197616 197703 C 88 94.32 1419 reject_low 7 ALIGNMENT 73 Y12-6c03.q1k chr06 289 216 180964 181037 C 74 100.00 1419 reject_low 12 ALIGNMENT 0 Y12-6c03.q1k chr06 301 795 162305 162304 F 495 0.00 1419 reject_low 6 ALIGNMENT 0 Y12-6c03.q1k chr04 302 795 83634 83633 F 494 0.00 1419 reject_low 8 ALIGNMENT 0 Y12-6c03.q1k chr05 204 62 61973 61972 C 143 0.00 1419 reject_low 3 ALIGNMENT 70 Y12-6c03.q1k chr13 287 217 183898 183968 C 71 100.00 1419 reject_low 16 ALIGNMENT 0 Y12-6c03.q1k chr02 215 62 197704 197703 C 154 0.00 1419 reject_low 7 ALIGNMENT 71 Y12-6c03.q1k chr04 216 301 83548 83634 F 86 95.35 1419 reject_low 8 ALIGNMENT 0 Y12-6c03.q1k chr10 795 307 396625 396624 C 489 0.00 1419 reject_low 2 ALIGNMENT 0 Y12-6c03.q1k chr13 216 62 183969 183968 C 155 0.00 1419 reject_low 16 ALIGNMENT 0 Y12-6c03.q1k chr02 795 304 197617 197616 C 492 0.00 1419 reject_low 7 ALIGNMENT 0 Y12-6c03.q1k chr04 62 204 992815 992814 F 143 0.00 1419 reject_low 4 ALIGNMENT 79 Y12-6c03.q1k chr05 296 205 61880 61972 C 92 95.65 1419 reject_low 3 ALIGNMENT 71 Y12-6c03.q1k chr16 217 291 572266 572340 F 75 98.67 1419 reject_low 15 ALIGNMENT 0 Y12-6c03.q1k chr07 795 302 930945 930944 C 494 0.00 1419 reject_low 5 ALIGNMENT 760 Y12-6c03.q1k chr10 36 969 531561 532488 F 934 94.97 1419 accept_chi 1 ALIGNMENT 0 Y12-6c03.q1k chr16 62 216 572266 572265 F 155 0.00 1419 reject_low 15 ALIGNMENT 0 Y12-6c03.q1k chr16 289 795 860446 860445 F 507 0.00 1419 reject_low 13 ALIGNMENT 79 Y12-6c03.q1k chr04 205 291 992815 992900 F 87 97.70 1419 reject_low 4 ALIGNMENT 0 Y12-6c03.q1k chr16 62 215 860374 860373 F 154 0.00 1419 reject_low 13 ALIGNMENT 72 Y12-6c03.q1k chr07 216 297 845653 845734 F 82 96.34 1419 reject_low 11 ALIGNMENT 981 Y12-6c04.q1k chr03 30 1166 125412 126560 F 1137 96.92 1380 accept 0 ALIGNMENT 964 Y12-6c05.q1k chr05 34 1164 408523 409659 F 1131 96.64 1328 accept 0 ALIGNMENT 744 Y12-6c05.p1k chr05 945 13 411827 412752 C 933 94.96 1287 accept 0 ALIGNMENT 835 Y12-6c06.p1k chr15 942 16 1008374 1009301 C 927 97.52 1219 accept 0 ALIGNMENT 1012 Y12-6c06.q1k chr15 33 1269 1004767 1006013 F 1237 95.96 1388 accept 0 ALIGNMENT 953 Y12-6c08.q1k chr07 45 1285 636455 637707 F 1241 94.36 1381 accept 0 ALIGNMENT 865 Y12-6c08.p1k chr07 1050 16 641928 642965 C 1035 95.07 1243 accept 0 ALIGNMENT 854 Y12-6c09.q1k chr08 968 34 185141 186078 C 935 97.86 1308 accept 0 ALIGNMENT 685 Y12-6c09.p1k chr08 11 778 182524 183289 F 768 97.14 1428 accept 0 ALIGNMENT 0 Y12-6c11.q1k chr03 502 904 163056 163055 F 403 0.00 1409 reject_low 1 ALIGNMENT 986 Y12-6c11.p1k chr05 1114 18 127264 128360 C 1097 97.45 1296 accept 0 ALIGNMENT 0 Y12-6c11.q1k chr03 62 384 162940 162939 F 323 0.00 1409 reject_low 1 ALIGNMENT 87 Y12-6c11.q1k chr03 385 501 162940 163056 F 117 92.31 1409 reject_low 1 ALIGNMENT 980 Y12-6c11.q1k chr05 36 1200 122446 123633 F 1165 96.14 1409 accept 0 ALIGNMENT 1008 Y12-6c12.q1k chr04 1200 33 1193521 1194698 C 1168 95.98 1509 accept 0 ALIGNMENT 1061 Y12-6c12.p1k chr04 20 1302 1188996 1190283 F 1283 95.64 1304 accept 0 ALIGNMENT 996 Y12-6c13.q1k chr04 1146 33 199248 200369 C 1114 96.86 1459 accept 0 ALIGNMENT 990 Y12-6c13.p1k chr04 32 1222 196399 197586 F 1191 95.47 1283 accept 0 ALIGNMENT 941 Y12-6c14.p1k chr09 18 1202 155792 156986 F 1185 94.68 1270 accept 0 ALIGNMENT 985 Y12-6c14.q1k chr09 1123 29 158977 160087 C 1095 97.26 1496 accept 0 ALIGNMENT 21 Y12-6c15.q1k chr03 390 356 247930 247964 C 35 94.29 1307 reject_low 1 ALIGNMENT 0 Y12-6c15.q1k chr03 834 391 247931 247930 C 444 0.00 1307 reject_low 1 ALIGNMENT 707 Y12-6c15.p1k chr06 859 13 112161 113011 C 847 95.63 1283 accept 0 ALIGNMENT 887 Y12-6c15.q1k chr06 33 1140 107478 108573 F 1108 95.13 1307 accept 0 ALIGNMENT 0 Y12-6c15.q1k chr03 355 62 247965 247964 C 294 0.00 1307 reject_low 1 ALIGNMENT 689 Y12-6c16.p1k chr13 14 899 774178 775051 F 886 93.79 1358 accept 0 ALIGNMENT 977 Y12-6c16.q1k chr13 1188 27 778701 779869 C 1162 96.39 1334 accept 0 ALIGNMENT 1079 Y12-6c17.q1k chr16 1293 37 494220 495474 C 1257 96.34 1325 accept 0 ALIGNMENT 967 Y12-6c17.p1k chr16 19 1144 491458 492576 F 1126 96.09 1280 accept 0 ALIGNMENT 1074 Y12-6c18.q1k chr15 1213 34 1029245 1030427 C 1180 97.71 1348 accept 0 ALIGNMENT 754 Y12-6c18.p1k chr15 17 919 1025241 1026131 F 903 96.57 1434 accept 0 ALIGNMENT 991 Y12-6c19.p1k chr07 18 1221 1036253 1037437 F 1204 96.26 1231 accept 0 ALIGNMENT 963 Y12-6c19.q1k chr07 1206 29 1041313 1042482 C 1178 95.67 1276 accept 0 ALIGNMENT 969 Y12-6c20.p1k chr10 17 1179 593437 594586 F 1163 96.56 1219 accept 0 ALIGNMENT 1018 Y12-6c20.q1k chr10 1268 31 598410 599657 C 1238 95.48 1291 accept 0 ALIGNMENT 824 Y12-6c21.q1k chr09 62 1077 52 1055 F 1016 95.47 1274 ambiguous_tel 1 ALIGNMENT 0 Y12-6c21.p1k chr02 384 272 4037 4036 C 113 0.00 1224 reject_low 17 ALIGNMENT 0 Y12-6c21.q1k chr14 77 134 2 1 F 58 0.00 1274 reject_low 4 ALIGNMENT 0 Y12-6c21.q1k chr06 77 808 2 1 F 732 0.00 1274 reject_low 18 ALIGNMENT 0 Y12-6c21.p1k chr08 384 272 3568 3567 C 113 0.00 1224 reject_low 13 ALIGNMENT 457 Y12-6c21.p1k chr12 1002 385 3230 3835 C 618 92.56 1224 reject_low 15 ALIGNMENT 577 Y12-6c21.p1k chr05 1002 262 3077 3805 C 741 93.66 1224 reject_low 8 ALIGNMENT 0 Y12-6c21.p1k chr08 272 384 558795 558794 F 113 0.00 1224 reject_low 12 ALIGNMENT 0 Y12-6c21.p1k chr16 272 384 944342 944341 F 113 0.00 1224 reject_low 16 ALIGNMENT 631 Y12-6c21.q1k chr12 1089 223 1077310 1078172 C 867 92.73 1274 reject_low 9 ALIGNMENT 574 Y12-6c21.p1k chr12 262 1002 1074522 1075250 F 741 93.52 1224 reject_low 9 ALIGNMENT 711 Y12-6c21.q1k chr08 1089 70 561462 562479 C 1020 91.86 1274 reject_low 12 ALIGNMENT 463 Y12-6c21.p1k chr06 1002 385 2267 2872 C 618 92.88 1224 reject_low 18 ALIGNMENT 0 Y12-6c21.q1k chr02 77 222 3 2 F 146 0.00 1274 reject_low 17 ALIGNMENT 0 Y12-6c21.p1k chr13 384 272 3712 3711 C 113 0.00 1224 reject_low 14 ALIGNMENT 696 Y12-6c21.q1k chr14 135 1089 2 953 F 955 92.67 1274 reject_low 4 ALIGNMENT 0 Y12-6c21.q1k chr05 77 237 2 1 F 161 0.00 1274 reject_low 8 ALIGNMENT 700 Y12-6c21.q1k chr12 62 1089 5695 6705 F 1028 91.83 1274 reject_low 11 ALIGNMENT 0 Y12-6c21.p1k chr12 384 272 3836 3835 C 113 0.00 1224 reject_low 15 ALIGNMENT 639 Y12-6c21.q1k chr16 223 1089 3 862 F 867 92.96 1274 reject_low 7 ALIGNMENT 0 Y12-6c21.q1k chr12 222 77 1078173 1078172 C 146 0.00 1274 reject_low 9 ALIGNMENT 574 Y12-6c21.p1k chr12 262 1002 1067859 1068587 F 741 93.52 1224 reject_low 3 ALIGNMENT 460 Y12-6c21.p1k chr16 385 1002 944342 944947 F 618 92.72 1224 reject_low 16 ALIGNMENT 627 Y12-6c21.q1k chr05 238 1089 2 849 F 852 92.96 1274 reject_low 8 ALIGNMENT 186 Y12-6c21.q1k chr06 809 1089 2 272 F 281 91.46 1274 reject_low 18 ALIGNMENT 689 Y12-6c21.q1k chr05 1089 154 575938 576866 C 936 92.95 1274 reject_low 5 ALIGNMENT 684 Y12-6c21.q1k chr12 70 1089 54 1062 F 1020 91.37 1274 reject_low 15 ALIGNMENT 716 Y12-6c21.q1k chr15 1089 77 1090274 1091287 C 1013 92.10 1274 reject_low 2 ALIGNMENT 824 Y12-6c21.q1k chr10 62 1077 35 1038 F 1016 95.47 1274 ambiguous_tel 0 ALIGNMENT 574 Y12-6c21.p1k chr15 262 1002 1087486 1088214 F 741 93.52 1224 reject_low 2 ALIGNMENT 598 Y12-6c21.q1k chr04 1089 288 1531109 1531908 C 802 93.27 1274 reject_low 10 ALIGNMENT 623 Y12-6c21.q1k chr02 223 1089 3 865 F 867 92.39 1274 reject_low 17 ALIGNMENT 711 Y12-6c21.q1k chr12 1089 87 1070647 1071649 C 1003 92.12 1274 reject_low 3 ALIGNMENT 460 Y12-6c21.p1k chr02 1002 385 3431 4036 C 618 92.72 1224 reject_low 17 ALIGNMENT 598 Y12-6c21.p1k chr10 1002 262 3384 4112 C 741 94.60 1224 ambiguous_tel 0 ALIGNMENT 574 Y12-6c21.p1k chr04 262 1002 1528321 1529049 F 741 93.52 1224 reject_low 10 ALIGNMENT 577 Y12-6c21.p1k chr16 1002 262 2922 3650 C 741 93.66 1224 reject_low 7 ALIGNMENT 577 Y12-6c21.p1k chr14 1002 262 3013 3741 C 741 93.66 1224 reject_low 4 ALIGNMENT 577 Y12-6c21.p1k chr07 262 1002 1087227 1087955 F 741 93.66 1224 reject_low 6 ALIGNMENT 454 Y12-6c21.p1k chr08 1002 385 2962 3567 C 618 92.39 1224 reject_low 13 ALIGNMENT 0 Y12-6c21.q1k chr16 77 222 3 2 F 146 0.00 1274 reject_low 7 ALIGNMENT 706 Y12-6c21.q1k chr13 70 1089 30 1046 F 1020 91.76 1274 reject_low 14 ALIGNMENT 595 Y12-6c21.p1k chr09 1002 262 3401 4129 C 741 94.47 1224 ambiguous_tel 1 ALIGNMENT 714 Y12-6c21.q1k chr08 70 1089 12 1030 F 1020 91.96 1274 reject_low 13 ALIGNMENT 0 Y12-6c21.q1k chr16 138 77 948063 948062 C 62 0.00 1274 reject_low 16 ALIGNMENT 0 Y12-6c21.p1k chr12 384 272 9371 9370 C 113 0.00 1224 reject_low 11 ALIGNMENT 689 Y12-6c21.q1k chr07 1089 154 1090015 1090943 C 936 92.95 1274 reject_low 6 ALIGNMENT 0 Y12-6c21.q1k chr05 153 77 576867 576866 C 77 0.00 1274 reject_low 5 ALIGNMENT 694 Y12-6c21.q1k chr16 1089 139 947115 948062 C 951 92.74 1274 reject_low 16 ALIGNMENT 457 Y12-6c21.p1k chr12 1002 385 8765 9370 C 618 92.56 1224 reject_low 11 ALIGNMENT 0 Y12-6c21.q1k chr04 287 77 1531909 1531908 C 211 0.00 1274 reject_low 10 ALIGNMENT 0 Y12-6c21.q1k chr07 153 77 1090944 1090943 C 77 0.00 1274 reject_low 6 ALIGNMENT 460 Y12-6c21.p1k chr08 385 1002 558795 559400 F 618 92.72 1224 reject_low 12 ALIGNMENT 457 Y12-6c21.p1k chr13 1002 385 3106 3711 C 618 92.56 1224 reject_low 14 ALIGNMENT 577 Y12-6c21.p1k chr05 262 1002 573150 573878 F 741 93.66 1224 reject_low 5 ALIGNMENT 0 Y12-6c21.p1k chr06 384 272 2873 2872 C 113 0.00 1224 reject_low 18 ALIGNMENT 975 Y12-6c22.p1k chr02 1105 17 24285 25370 C 1089 97.61 1189 accept 0 ALIGNMENT 1026 Y12-6c22.q1k chr02 36 1268 20737 21979 F 1233 95.94 1306 accept 0 ALIGNMENT 533 Y12-6c24.p1k chr12 628 17 454725 455335 C 612 96.57 1270 reject_low 1 ALIGNMENT 609 Y12-6c24.q1k chr12 30 851 460330 461176 F 822 92.70 1310 accept 0 ALIGNMENT 0 Y12-6c24.q1k chr12 62 249 451419 451418 F 188 0.00 1310 reject_low 1 ALIGNMENT 533 Y12-6c24.p1k chr12 628 17 463862 464472 C 612 96.57 1270 accept 0 ALIGNMENT 0 Y12-6c24.q1k chr12 62 597 489754 489753 F 536 0.00 1310 reject_low 2 ALIGNMENT 447 Y12-6c24.q1k chr12 250 851 451419 452039 F 602 92.69 1310 reject_low 1 ALIGNMENT 159 Y12-6c24.q1k chr12 598 851 489754 490007 F 254 88.98 1310 reject_low 2 ALIGNMENT 0 Y12-6d01.q1k chr15 62 331 571958 571957 F 270 0.00 1363 reject_low 13 ALIGNMENT 77 Y12-6d01.q1k chr12 332 409 793918 793995 F 78 100.00 1363 reject_low 19 ALIGNMENT 85 Y12-6d01.q1k chr10 332 418 541422 541508 F 87 100.00 1363 reject_low 6 ALIGNMENT 0 Y12-6d01.q1k chr10 228 62 374515 374514 C 167 0.00 1363 reject_low 1 ALIGNMENT 988 Y12-6d01.q1k chr02 30 1185 405652 406804 F 1156 96.28 1363 accept 0 ALIGNMENT 70 Y12-6d01.q1k chr14 410 340 519093 519163 C 71 100.00 1363 reject_low 21 ALIGNMENT 83 Y12-6d01.q1k chr07 411 327 544573 544657 C 85 100.00 1363 reject_low 12 ALIGNMENT 0 Y12-6d01.q1k chr09 891 412 324294 324293 C 480 0.00 1363 reject_low 14 ALIGNMENT 75 Y12-6d01.q1k chr13 325 248 747887 747964 C 78 98.72 1363 reject_low 10 ALIGNMENT 88 Y12-6d01.q1k chr07 329 230 828720 828819 C 100 96.00 1363 reject_low 4 ALIGNMENT 77 Y12-6d01.q1k chr07 326 411 531608 531693 F 86 97.67 1363 reject_low 15 ALIGNMENT 0 Y12-6d01.q1k chr07 326 62 544658 544657 C 265 0.00 1363 reject_low 12 ALIGNMENT 0 Y12-6d01.q1k chr13 891 334 131814 131813 C 558 0.00 1363 reject_low 5 ALIGNMENT 0 Y12-6d01.q1k chr05 330 891 138745 138744 F 562 0.00 1363 reject_low 9 ALIGNMENT 0 Y12-6d01.q1k chr04 412 891 569040 569039 F 480 0.00 1363 reject_low 3 ALIGNMENT 0 Y12-6d01.q1k chr14 891 411 519094 519093 C 481 0.00 1363 reject_low 21 ALIGNMENT 0 Y12-6d01.q1k chr07 322 891 736416 736415 F 570 0.00 1363 reject_low 11 ALIGNMENT 74 Y12-6d01.q1k chr12 325 411 427124 427212 F 87 96.55 1363 reject_low 20 ALIGNMENT 0 Y12-6d01.q1k chr09 331 62 336418 336417 C 270 0.00 1363 reject_low 16 ALIGNMENT 78 Y12-6d01.q1k chr13 332 411 463553 463632 F 80 100.00 1363 reject_low 18 ALIGNMENT 634 Y12-6d01.p1k chr02 713 34 408083 408763 C 680 98.09 1457 accept 0 ALIGNMENT 0 Y12-6d01.q1k chr07 412 891 531693 531692 F 480 0.00 1363 reject_low 15 ALIGNMENT 0 Y12-6d01.q1k chr07 62 325 531608 531607 F 264 0.00 1363 reject_low 15 ALIGNMENT 0 Y12-6d01.q1k chr07 330 891 405552 405551 F 562 0.00 1363 reject_low 7 ALIGNMENT 0 Y12-6d01.q1k chr12 62 324 427124 427123 F 263 0.00 1363 reject_low 20 ALIGNMENT 0 Y12-6d01.q1k chr07 229 62 828820 828819 C 168 0.00 1363 reject_low 4 ALIGNMENT 0 Y12-6d01.q1k chr11 891 326 162489 162488 C 566 0.00 1363 reject_low 8 ALIGNMENT 0 Y12-6d01.q1k chr05 62 235 138653 138652 F 174 0.00 1363 reject_low 9 ALIGNMENT 0 Y12-6d01.q1k chr10 891 435 374310 374309 C 457 0.00 1363 reject_low 1 ALIGNMENT 170 Y12-6d01.q1k chr10 238 411 355278 355451 F 174 99.43 1363 reject_low 2 ALIGNMENT 0 Y12-6d01.q1k chr13 891 326 747888 747887 C 566 0.00 1363 reject_low 10 ALIGNMENT 0 Y12-6d01.q1k chr13 247 62 747965 747964 C 186 0.00 1363 reject_low 10 ALIGNMENT 0 Y12-6d01.q1k chr07 891 330 828721 828720 C 562 0.00 1363 reject_low 4 ALIGNMENT 0 Y12-6d01.q1k chr10 62 331 541422 541421 F 270 0.00 1363 reject_low 6 ALIGNMENT 81 Y12-6d01.q1k chr11 325 239 162488 162574 C 87 97.70 1363 reject_low 8 ALIGNMENT 0 Y12-6d01.q1k chr11 238 62 162575 162574 C 177 0.00 1363 reject_low 8 ALIGNMENT 0 Y12-6d01.q1k chr13 62 331 463553 463552 F 270 0.00 1363 reject_low 18 ALIGNMENT 0 Y12-6d01.q1k chr13 412 891 463632 463631 F 480 0.00 1363 reject_low 18 ALIGNMENT 0 Y12-6d01.q1k chr09 330 62 324374 324373 C 269 0.00 1363 reject_low 14 ALIGNMENT 0 Y12-6d01.q1k chr12 62 331 793918 793917 F 270 0.00 1363 reject_low 19 ALIGNMENT 79 Y12-6d01.q1k chr15 332 412 571958 572038 F 81 100.00 1363 reject_low 13 ALIGNMENT 0 Y12-6d01.q1k chr12 410 891 793995 793994 F 482 0.00 1363 reject_low 19 ALIGNMENT 0 Y12-6d01.q1k chr10 62 331 204652 204651 F 270 0.00 1363 reject_low 17 ALIGNMENT 0 Y12-6d01.q1k chr04 62 239 568869 568868 F 178 0.00 1363 reject_low 3 ALIGNMENT 0 Y12-6d01.q1k chr07 62 237 405461 405460 F 176 0.00 1363 reject_low 7 ALIGNMENT 0 Y12-6d01.q1k chr09 891 412 336339 336338 C 480 0.00 1363 reject_low 16 ALIGNMENT 78 Y12-6d01.q1k chr10 332 411 204652 204731 F 80 100.00 1363 reject_low 17 ALIGNMENT 0 Y12-6d01.q1k chr13 235 62 131910 131909 C 174 0.00 1363 reject_low 5 ALIGNMENT 0 Y12-6d01.q1k chr10 419 891 541508 541507 F 473 0.00 1363 reject_low 6 ALIGNMENT 168 Y12-6d01.q1k chr04 240 411 568869 569040 F 172 99.42 1363 reject_low 3 ALIGNMENT 0 Y12-6d01.q1k chr10 412 891 355451 355450 F 480 0.00 1363 reject_low 2 ALIGNMENT 74 Y12-6d01.q1k chr07 248 321 736343 736416 F 74 100.00 1363 reject_low 11 ALIGNMENT 0 Y12-6d01.q1k chr10 412 891 204731 204730 F 480 0.00 1363 reject_low 17 ALIGNMENT 87 Y12-6d01.q1k chr13 333 236 131813 131909 C 98 96.94 1363 reject_low 5 ALIGNMENT 0 Y12-6d01.q1k chr07 891 412 544574 544573 C 480 0.00 1363 reject_low 12 ALIGNMENT 0 Y12-6d01.q1k chr12 412 891 427212 427211 F 480 0.00 1363 reject_low 20 ALIGNMENT 78 Y12-6d01.q1k chr09 411 332 336338 336417 C 80 100.00 1363 reject_low 16 ALIGNMENT 79 Y12-6d01.q1k chr09 411 331 324293 324373 C 81 100.00 1363 reject_low 14 ALIGNMENT 0 Y12-6d01.q1k chr10 62 237 355278 355277 F 176 0.00 1363 reject_low 2 ALIGNMENT 0 Y12-6d01.q1k chr07 62 247 736343 736342 F 186 0.00 1363 reject_low 11 ALIGNMENT 0 Y12-6d01.q1k chr14 339 62 519164 519163 C 278 0.00 1363 reject_low 21 ALIGNMENT 77 Y12-6d01.q1k chr05 236 329 138653 138745 F 94 94.68 1363 reject_low 9 ALIGNMENT 204 Y12-6d01.q1k chr10 434 229 374309 374514 C 206 100.00 1363 reject_low 1 ALIGNMENT 86 Y12-6d01.q1k chr07 238 329 405461 405552 F 92 97.83 1363 reject_low 7 ALIGNMENT 0 Y12-6d01.q1k chr15 413 891 572038 572037 F 479 0.00 1363 reject_low 13 ALIGNMENT 699 Y12-6d02.p1k chr12 910 12 455228 456114 C 899 94.22 1296 accept 0 ALIGNMENT 699 Y12-6d02.p1k chr12 910 12 464365 465251 C 899 94.22 1296 accept 1 ALIGNMENT 916 Y12-6d03.q1k chr16 1107 31 264420 265510 C 1077 96.29 1322 accept 0 ALIGNMENT 900 Y12-6d04.q1k chr13 1090 29 854861 855927 C 1062 96.23 1359 accept 0 ALIGNMENT 0 Y12-6d05.q1k chr04 62 144 1201738 1201737 F 83 0.00 1409 reject_low 12 ALIGNMENT 80 Y12-6d05.q1k chr07 145 230 876397 876481 F 86 98.84 1409 reject_low 6 ALIGNMENT 90 Y12-6d05.q1k chr04 230 132 1352446 1352543 C 99 97.98 1409 reject_low 1 ALIGNMENT 0 Y12-6d05.q1k chr11 229 814 202725 202724 F 586 0.00 1409 reject_low 11 ALIGNMENT 77 Y12-6d05.q1k chr05 228 146 435740 435821 C 83 98.80 1409 reject_low 10 ALIGNMENT 89 Y12-6d05.q1k chr10 132 230 414866 414964 F 99 96.97 1409 reject_low 2 ALIGNMENT 0 Y12-6d05.q1k chr07 814 230 185712 185711 C 585 0.00 1409 reject_low 3 ALIGNMENT 0 Y12-6d05.q1k chr09 131 62 300314 300313 C 70 0.00 1409 reject_low 4 ALIGNMENT 0 Y12-6d05.q1k chr04 814 231 1352447 1352446 C 584 0.00 1409 reject_low 1 ALIGNMENT 0 Y12-6d05.q1k chr16 62 145 582058 582057 F 84 0.00 1409 reject_low 8 ALIGNMENT 70 Y12-6d05.q1k chr06 230 147 226663 226747 C 84 96.43 1409 reject_low 13 ALIGNMENT 0 Y12-6d05.q1k chr05 814 229 435741 435740 C 586 0.00 1409 reject_low 10 ALIGNMENT 0 Y12-6d05.q1k chr13 814 232 480611 480610 C 583 0.00 1409 reject_low 5 ALIGNMENT 77 Y12-6d05.q1k chr11 146 228 202644 202725 F 83 98.80 1409 reject_low 11 ALIGNMENT 78 Y12-6d05.q1k chr03 229 146 151272 151354 C 84 98.81 1409 reject_low 7 ALIGNMENT 0 Y12-6d05.q1k chr05 145 62 135499 135498 C 84 0.00 1409 reject_low 9 ALIGNMENT 0 Y12-6d05.q1k chr07 131 62 185808 185807 C 70 0.00 1409 reject_low 3 ALIGNMENT 0 Y12-6d05.q1k chr07 62 144 876397 876396 F 83 0.00 1409 reject_low 6 ALIGNMENT 0 Y12-6d05.q1k chr06 814 231 226664 226663 C 584 0.00 1409 reject_low 13 ALIGNMENT 0 Y12-6d05.q1k chr10 62 131 414866 414865 F 70 0.00 1409 reject_low 2 ALIGNMENT 78 Y12-6d05.q1k chr16 146 229 582058 582140 F 84 98.81 1409 reject_low 8 ALIGNMENT 77 Y12-6d05.q1k chr05 228 146 135417 135498 C 83 98.80 1409 reject_low 9 ALIGNMENT 0 Y12-6d05.q1k chr04 131 62 1352544 1352543 C 70 0.00 1409 reject_low 1 ALIGNMENT 0 Y12-6d05.q1k chr11 62 145 202644 202643 F 84 0.00 1409 reject_low 11 ALIGNMENT 0 Y12-6d05.q1k chr03 814 230 151273 151272 C 585 0.00 1409 reject_low 7 ALIGNMENT 0 Y12-6d05.q1k chr10 231 814 414964 414963 F 584 0.00 1409 reject_low 2 ALIGNMENT 0 Y12-6d05.q1k chr09 814 229 300220 300219 C 586 0.00 1409 reject_low 4 ALIGNMENT 0 Y12-6d05.q1k chr16 230 814 582140 582139 F 585 0.00 1409 reject_low 8 ALIGNMENT 996 Y12-6d05.p1k chr07 1180 16 124940 126119 C 1165 96.14 1182 accept 0 ALIGNMENT 0 Y12-6d05.q1k chr05 814 229 135418 135417 C 586 0.00 1409 reject_low 9 ALIGNMENT 0 Y12-6d05.q1k chr06 146 62 226748 226747 C 85 0.00 1409 reject_low 13 ALIGNMENT 0 Y12-6d05.q1k chr03 145 62 151355 151354 C 84 0.00 1409 reject_low 7 ALIGNMENT 77 Y12-6d05.q1k chr13 231 145 480610 480694 C 87 97.70 1409 reject_low 5 ALIGNMENT 76 Y12-6d05.q1k chr04 145 220 1201738 1201813 F 76 100.00 1409 reject_low 12 ALIGNMENT 0 Y12-6d05.q1k chr07 231 814 876481 876480 F 584 0.00 1409 reject_low 6 ALIGNMENT 0 Y12-6d05.q1k chr05 145 62 435822 435821 C 84 0.00 1409 reject_low 10 ALIGNMENT 86 Y12-6d05.q1k chr07 229 132 185711 185807 C 98 96.94 1409 reject_low 3 ALIGNMENT 0 Y12-6d05.q1k chr13 144 62 480695 480694 C 83 0.00 1409 reject_low 5 ALIGNMENT 0 Y12-6d05.q1k chr04 221 814 1201813 1201812 F 594 0.00 1409 reject_low 12 ALIGNMENT 836 Y12-6d05.q1k chr07 26 989 122152 123110 F 964 96.58 1409 accept 0 ALIGNMENT 83 Y12-6d05.q1k chr09 228 132 300219 300313 C 97 96.91 1409 reject_low 4 ALIGNMENT 920 Y12-6d06.p1k chr06 19 1005 176430 177411 F 987 98.48 1218 accept 0 ALIGNMENT 814 Y12-6d07.p1k chr04 998 17 1506913 1507896 C 982 94.70 1256 accept_chi 0 ALIGNMENT 482 Y12-6d07.q1k chr13 877 28 561880 562710 C 850 87.53 1439 accept_chi 1 ALIGNMENT 858 Y12-6d09.p1k chr05 25 1018 351390 352393 F 994 96.58 1309 accept 0 ALIGNMENT 924 Y12-6d09.q1k chr05 1156 27 356874 357991 C 1130 96.02 1397 accept 0 ALIGNMENT 748 Y12-6d10.p1k chr14 950 14 179628 180555 C 937 95.20 1351 accept 0 ALIGNMENT 1006 Y12-6d11.p1k chr04 29 1203 1047441 1048622 F 1175 95.91 1288 accept 0 ALIGNMENT 1009 Y12-6d11.q1k chr04 1191 32 1051161 1052331 C 1160 96.64 1483 accept 0 ALIGNMENT 1059 Y12-6d13.q1k chr08 1199 30 182351 183527 C 1170 97.44 1527 accept 0 ALIGNMENT 953 Y12-6d13.p1k chr08 18 1225 177874 179084 F 1208 94.29 1267 accept 0 ALIGNMENT 981 Y12-6d14.p1k chr11 1190 22 265641 266818 C 1169 96.32 1254 accept 0 ALIGNMENT 978 Y12-6d15.q1k chr04 1155 35 569459 570585 C 1121 96.52 1316 accept 0 ALIGNMENT 1014 Y12-6d15.p1k chr04 26 1238 566131 567352 F 1213 96.04 1261 accept 0 ALIGNMENT 1004 Y12-6d16.p1k chr16 17 1223 345489 346694 F 1207 95.86 1255 accept 0 ALIGNMENT 1039 Y12-6d16.q1k chr16 1218 31 348675 349862 C 1188 96.97 1308 accept 0 ALIGNMENT 1008 Y12-6d17.q1k chr15 1216 27 753759 754964 C 1190 96.05 1335 accept 0 ALIGNMENT 1017 Y12-6d17.p1k chr15 22 1278 750708 751963 F 1257 94.83 1293 accept 0 ALIGNMENT 676 Y12-6d18.p1k chr04 763 1 1460941 1461695 C 763 97.64 1124 accept 0 ALIGNMENT 860 Y12-6d19.q1k chr16 1221 35 806519 807703 C 1187 91.91 1319 ambiguous_trans 21 ALIGNMENT 992 Y12-6d19.q1k chr14 1221 35 98486 99670 C 1187 95.62 1319 ambiguous_trans 8 ALIGNMENT 864 Y12-6d19.q1k chr16 35 1221 59310 60494 F 1187 92.00 1319 ambiguous_trans 19 ALIGNMENT 869 Y12-6d19.q1k chr13 1221 35 374578 375762 C 1187 92.17 1319 ambiguous_trans 14 ALIGNMENT 1007 Y12-6d19.q1k chr13 1221 35 358880 360064 C 1187 96.04 1319 ambiguous_trans 2 ALIGNMENT 855 Y12-6d19.q1k chr04 35 1221 1098621 1099805 F 1187 91.74 1319 ambiguous_trans 23 ALIGNMENT 992 Y12-6d19.q1k chr08 1221 35 545486 546670 C 1187 95.62 1319 ambiguous_trans 7 ALIGNMENT 995 Y12-6d19.q1k chr12 1221 35 216963 218147 C 1187 95.70 1319 ambiguous_trans_ua 5 ALIGNMENT 992 Y12-6d19.q1k chr05 1221 35 494373 495557 C 1187 95.62 1319 ambiguous_trans 6 ALIGNMENT 864 Y12-6d19.q1k chr15 35 1221 120561 121745 F 1187 92.00 1319 ambiguous_trans 18 ALIGNMENT 858 Y12-6d19.q1k chr13 35 1221 187023 188207 F 1187 91.83 1319 ambiguous_trans 22 ALIGNMENT 998 Y12-6d19.q1k chr07 1221 35 819274 820458 C 1187 95.79 1319 ambiguous_trans 4 ALIGNMENT 864 Y12-6d19.q1k chr04 35 1221 1209549 1210733 F 1187 92.00 1319 ambiguous_trans 15 ALIGNMENT 870 Y12-6d19.q1k chr12 35 1221 596002 597186 F 1187 92.17 1319 ambiguous_trans 13 ALIGNMENT 855 Y12-6d19.q1k chr16 35 1221 847270 848454 F 1187 91.74 1319 ambiguous_trans 24 ALIGNMENT 861 Y12-6d19.q1k chr12 35 1221 653683 654867 F 1187 91.91 1319 ambiguous_trans 20 ALIGNMENT 870 Y12-6d19.p1k chr04 15 1073 618427 619475 F 1059 96.41 1219 accept 0 ALIGNMENT 1044 Y12-6d19.q1k chr02 35 1221 223895 225079 F 1187 97.05 1319 ambiguous_trans 1 ALIGNMENT 890 Y12-6d19.q1k chr04 1221 35 880176 881360 C 1187 92.75 1319 ambiguous_trans 10 ALIGNMENT 1002 Y12-6d19.q1k chr02 35 1221 262429 263616 F 1187 95.96 1319 ambiguous_trans 3 ALIGNMENT 870 Y12-6d19.q1k chr10 35 1221 480820 482004 F 1187 92.17 1319 ambiguous_trans 12 ALIGNMENT 878 Y12-6d19.q1k chr16 1221 35 852507 853691 C 1187 92.42 1319 ambiguous_trans 11 ALIGNMENT 921 Y12-6d19.q1k chr14 35 1221 522019 523185 F 1187 94.27 1319 ambiguous_trans 9 ALIGNMENT 864 Y12-6d19.q1k chr13 35 1221 199190 200374 F 1187 92.00 1319 ambiguous_trans 17 ALIGNMENT 864 Y12-6d19.q1k chr10 35 1221 475236 476420 F 1187 92.00 1319 ambiguous_trans 16 ALIGNMENT 0 Y12-6d20.q1k chr12 62 901 482049 482048 F 840 0.00 1325 reject_low 5 ALIGNMENT 59 Y12-6d20.q1k chr12 902 1011 485701 485807 F 110 87.27 1325 reject_low 6 ALIGNMENT 870 Y12-6d20.q1k chr12 32 1048 458811 459824 F 1017 97.05 1325 accept 0 ALIGNMENT 94 Y12-6d20.q1k chr06 636 529 31622 31729 C 108 98.15 1325 reject_low 3 ALIGNMENT 59 Y12-6d20.q1k chr12 902 1011 482049 482155 F 110 87.27 1325 reject_low 5 ALIGNMENT 0 Y12-6d20.q1k chr06 806 637 31623 31622 C 170 0.00 1325 reject_low 3 ALIGNMENT 59 Y12-6d20.q1k chr12 902 1011 472469 472575 F 110 87.27 1325 reject_low 4 ALIGNMENT 0 Y12-6d20.q1k chr06 528 62 31730 31729 C 467 0.00 1325 reject_low 3 ALIGNMENT 753 Y12-6d20.p1k chr12 1196 121 462722 463775 C 1076 91.54 1220 accept 0 ALIGNMENT 862 Y12-6d20.q1k chr12 32 1011 467948 468923 F 980 97.65 1325 reject_low 2 ALIGNMENT 753 Y12-6d20.p1k chr12 1196 121 453585 454638 C 1076 91.54 1220 reject_low 1 ALIGNMENT 0 Y12-6d20.q1k chr12 62 901 485701 485700 F 840 0.00 1325 reject_low 6 ALIGNMENT 0 Y12-6d20.q1k chr12 62 901 472469 472468 F 840 0.00 1325 reject_low 4 ALIGNMENT 820 Y12-6d22.p1k chr13 954 19 255177 256101 C 936 98.08 1198 accept 0 ALIGNMENT 1038 Y12-6d23.q1k chr13 1259 34 255489 256723 C 1226 96.57 1262 accept 0 ALIGNMENT 971 Y12-6d23.p1k chr13 25 1156 251069 252198 F 1132 96.29 1159 accept 0 ALIGNMENT 878 Y12-6d24.p1k chr10 1036 26 719770 720771 C 1011 97.13 1193 accept 0 ALIGNMENT 970 Y12-6d24.q1k chr10 35 1128 715699 716786 F 1094 97.26 1236 accept 0 ALIGNMENT 0 Y12-6e01.q1k chr02 186 288 197717 197716 F 103 0.00 1287 ambiguous_trans_ua 17 ALIGNMENT 315 Y12-6e01.q1k chr14 289 627 546739 547077 F 339 98.82 1287 ambiguous_trans_ua 11 ALIGNMENT 0 Y12-6e01.q1k chr16 186 245 769274 769273 F 60 0.00 1287 ambiguous_trans_ua 3 ALIGNMENT 322 Y12-6e01.q1k chr09 283 631 210299 210647 F 349 98.57 1287 ambiguous_trans 5 ALIGNMENT 0 Y12-6e01.q1k chr09 186 282 210299 210298 F 97 0.00 1287 ambiguous_trans 5 ALIGNMENT 301 Y12-6e01.q1k chr16 246 627 769274 769656 F 382 93.98 1287 ambiguous_trans_ua 3 ALIGNMENT 0 Y12-6e01.q1k chr14 186 288 726235 726234 F 103 0.00 1287 ambiguous_trans_ua 21 ALIGNMENT 293 Y12-6e01.q1k chr02 289 627 197717 198056 F 339 96.76 1287 ambiguous_trans_ua 17 ALIGNMENT 0 Y12-6e01.q1k chr04 186 283 668086 668085 F 98 0.00 1287 ambiguous_trans_ua 9 ALIGNMENT 0 Y12-6e01.q1k chr07 186 282 712204 712203 F 97 0.00 1287 ambiguous_trans 4 ALIGNMENT 300 Y12-6e01.q1k chr07 289 619 735987 736318 F 331 98.19 1287 ambiguous_trans_ua 14 ALIGNMENT 0 Y12-6e01.q1k chr04 186 286 1023129 1023128 F 101 0.00 1287 ambiguous_trans_ua 20 ALIGNMENT 84 Y12-6e01.q1k chr03 191 277 151272 151358 F 87 98.85 1287 accept_chi 2 ALIGNMENT 0 Y12-6e01.q1k chr01 186 288 182614 182613 F 103 0.00 1287 ambiguous_trans_ua 10 ALIGNMENT 0 Y12-6e01.q1k chr14 186 424 546561 546560 F 239 0.00 1287 ambiguous_trans_ua 22 ALIGNMENT 0 Y12-6e01.q1k chr04 288 186 946290 946289 C 103 0.00 1287 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-6e01.q1k chr05 288 186 434968 434967 C 103 0.00 1287 ambiguous_trans_ua 13 ALIGNMENT 0 Y12-6e01.q1k chr07 288 186 319766 319765 C 103 0.00 1287 ambiguous_trans_ua 16 ALIGNMENT 0 Y12-6e01.q1k chr03 278 587 151358 151357 F 310 0.00 1287 accept_chi 2 ALIGNMENT 0 Y12-6e01.q1k chr07 186 283 707194 707193 F 98 0.00 1287 ambiguous_trans 7 ALIGNMENT 299 Y12-6e01.q1k chr05 627 289 434628 434967 C 339 97.35 1287 ambiguous_trans_ua 13 ALIGNMENT 298 Y12-6e01.q1k chr16 299 627 856551 856880 F 329 98.18 1287 ambiguous_trans_ua 15 ALIGNMENT 23 Y12-6e01.q1k chr14 425 536 546561 546674 F 112 75.89 1287 ambiguous_trans_ua 22 ALIGNMENT 299 Y12-6e01.q1k chr04 627 289 945950 946289 C 339 97.35 1287 ambiguous_trans_ua 12 ALIGNMENT 321 Y12-6e01.q1k chr09 283 627 205211 205555 F 345 98.84 1287 ambiguous_trans 6 ALIGNMENT 284 Y12-6e01.q1k chr14 289 627 726235 726574 F 339 95.87 1287 ambiguous_trans_ua 21 ALIGNMENT 0 Y12-6e01.q1k chr15 186 283 854268 854267 F 98 0.00 1287 ambiguous_trans_ua 8 ALIGNMENT 0 Y12-6e01.q1k chr08 288 186 146665 146664 C 103 0.00 1287 ambiguous_trans_ua 18 ALIGNMENT 0 Y12-6e01.q1k chr12 186 284 373996 373995 F 99 0.00 1287 ambiguous_trans_ua 19 ALIGNMENT 0 Y12-6e01.q1k chr03 186 290 168386 168385 F 105 0.00 1287 ambiguous_trans_ua 23 ALIGNMENT 0 Y12-6e01.q1k chr07 186 288 735987 735986 F 103 0.00 1287 ambiguous_trans_ua 14 ALIGNMENT 390 Y12-6e01.q1k chr11 627 192 202291 202725 C 436 97.48 1287 ambiguous_trans_ua 1 ALIGNMENT 318 Y12-6e01.q1k chr01 289 627 182614 182952 F 339 99.12 1287 ambiguous_trans_ua 10 ALIGNMENT 0 Y12-6e01.q1k chr03 497 496 168593 168931 F 0 0.00 1287 ambiguous_trans_ua 23 ALIGNMENT 120 Y12-6e01.q1k chr03 494 627 168929 169062 F 134 97.76 1287|3,0 ambiguous_trans_ua 23 ALIGNMENT 286 Y12-6e01.q1k chr04 287 627 1023129 1023470 F 341 95.89 1287 ambiguous_trans_ua 20 ALIGNMENT 322 Y12-6e01.q1k chr07 283 631 712204 712552 F 349 98.57 1287 ambiguous_trans 4 ALIGNMENT 181 Y12-6e01.q1k chr03 291 499 168386 168595 F 209 97.13 1287|0,3 ambiguous_trans_ua 23 ALIGNMENT 297 Y12-6e01.q1k chr07 627 289 319427 319765 C 339 97.05 1287 ambiguous_trans_ua 16 ALIGNMENT 319 Y12-6e01.q1k chr07 284 627 707194 707537 F 344 98.84 1287 ambiguous_trans 7 ALIGNMENT 0 Y12-6e01.q1k chr09 186 282 205211 205210 F 97 0.00 1287 ambiguous_trans 6 ALIGNMENT 0 Y12-6e01.q1k chr14 186 288 546739 546738 F 103 0.00 1287 ambiguous_trans_ua 11 ALIGNMENT 299 Y12-6e01.q1k chr15 284 631 854268 854615 F 348 96.84 1287 ambiguous_trans_ua 8 ALIGNMENT 0 Y12-6e01.q1k chr16 186 298 856551 856550 F 113 0.00 1287 ambiguous_trans_ua 15 ALIGNMENT 1018 Y12-6e01.p1k chr05 1205 14 140748 141938 C 1192 96.22 1205 accept_chi 0 ALIGNMENT 0 Y12-6e01.q1k chr14 537 587 546674 546673 F 51 0.00 1287 ambiguous_trans_ua 22 ALIGNMENT 286 Y12-6e01.q1k chr12 285 619 373996 374330 F 335 96.72 1287 ambiguous_trans_ua 19 ALIGNMENT 293 Y12-6e01.q1k chr08 627 289 146325 146664 C 339 96.76 1287 ambiguous_trans_ua 18 ALIGNMENT 298 Y12-6e01.q1k chr04 284 631 668086 668434 F 348 96.55 1287 ambiguous_trans_ua 9 ALIGNMENT 1002 Y12-6e02.q1k chr16 1220 30 749200 750396 C 1191 95.89 1342 accept 0 ALIGNMENT 895 Y12-6e02.p1k chr16 13 1092 745360 746436 F 1080 95.93 1206 accept 0 ALIGNMENT 983 Y12-6e03.q1k chr11 28 1183 107800 108971 F 1156 96.45 1296 accept 0 ALIGNMENT 1004 Y12-6e03.p1k chr11 1223 28 112300 113493 C 1196 96.07 1233 accept 0 ALIGNMENT 205 Y12-6e05.p1k chr15 648 380 867582 867850 C 269 92.57 1347 reject_low 1 ALIGNMENT 963 Y12-6e05.q1k chr13 28 1103 727832 728921 F 1076 97.86 1338 accept 0 ALIGNMENT 698 Y12-6e05.p1k chr13 805 13 732717 733510 C 793 97.48 1347 accept 0 ALIGNMENT 0 Y12-6e05.p1k chr15 379 62 867851 867850 C 318 0.00 1347 reject_low 1 ALIGNMENT 0 Y12-6e05.p1k chr15 681 649 867583 867582 C 33 0.00 1347 reject_low 1 ALIGNMENT 1100 Y12-6e06.q1k chr10 34 1222 661390 662588 F 1189 97.90 1415 accept 0 ALIGNMENT 965 Y12-6e06.p1k chr10 1135 22 664373 665495 C 1114 96.86 1286 accept 0 ALIGNMENT 827 Y12-6e07.q1k chr09 1073 27 198792 199836 C 1047 93.98 1393 accept 0 ALIGNMENT 972 Y12-6e07.p1k chr09 26 1164 195581 196732 F 1139 96.66 1264 accept 0 ALIGNMENT 920 Y12-6e08.q1k chr10 1127 31 512793 513897 C 1097 96.63 1422 accept_chi 0 ALIGNMENT 819 Y12-6e08.p1k chr12 20 994 122070 123039 F 975 96.41 1354 accept_chi 1 ALIGNMENT 0 Y12-6e09.q1k chr04 62 193 1238773 1238772 F 132 0.00 1459 accept 0 ALIGNMENT 262 Y12-6e09.q1k chr04 194 470 1238773 1239049 F 277 100.00 1459 accept 0 ALIGNMENT 136 Y12-6e09.q1k chr13 35 193 370489 370647 F 159 97.48 1459 reject_low 2 ALIGNMENT 0 Y12-6e09.q1k chr04 442 62 1239050 1239049 C 381 0.00 1459 reject_low 3 ALIGNMENT 413 Y12-6e09.p1k chr15 436 13 575098 575519 C 424 99.53 1389 reject_low 1 ALIGNMENT 35 Y12-6e09.q1k chr04 499 443 1238992 1239049 C 57 94.74 1459 reject_low 3 ALIGNMENT 0 Y12-6e09.q1k chr13 194 481 370647 370646 F 288 0.00 1459 reject_low 2 ALIGNMENT 776 Y12-6e09.p1k chr04 868 13 1242791 1243641 C 856 97.66 1389 accept 0 ALIGNMENT 0 Y12-6e09.p1k chr15 722 437 575099 575098 C 286 0.00 1389 reject_low 1 ALIGNMENT 885 Y12-6e10.p1k chr08 1090 30 497362 498425 C 1061 94.82 1294 accept 0 ALIGNMENT 946 Y12-6e10.q1k chr08 36 1155 492848 493970 F 1120 96.96 1528 accept 0 ALIGNMENT 803 Y12-6e11.p1k chr11 10 932 612101 613018 F 923 96.75 1337 accept 0 ALIGNMENT 22 Y12-6e11.p1k chr11 839 879 612986 613026 F 41 85.37 1337|4,0 reject_low 1 ALIGNMENT 0 Y12-6e11.p1k chr11 62 811 612827 612826 F 750 0.00 1337 reject_low 1 ALIGNMENT 22 Y12-6e11.p1k chr11 812 846 612827 612861 F 35 88.57 1337|0,4 reject_low 1 ALIGNMENT 0 Y12-6e11.p1k chr11 843 842 612858 612989 F 0 0.00 1337 reject_low 1 ALIGNMENT 987 Y12-6e11.q1k chr11 1128 34 615325 616433 C 1095 97.44 1429 accept 0 ALIGNMENT 415 Y12-6e12.p1k chr04 877 370 220140 220644 C 508 94.69 1447 reject_low 1 ALIGNMENT 1014 Y12-6e12.q1k chr04 31 1197 120036 121220 F 1167 97.00 1488 accept 0 ALIGNMENT 831 Y12-6e12.p1k chr04 947 15 124284 125206 C 933 97.75 1447 accept 0 ALIGNMENT 0 Y12-6e12.p1k chr04 369 62 220645 220644 C 308 0.00 1447 reject_low 1 ALIGNMENT 995 Y12-6e14.q1k chr04 1166 29 1057970 1059121 C 1138 96.92 1468 accept 0 ALIGNMENT 1003 Y12-6e14.p1k chr04 24 1287 1054274 1055545 F 1264 94.30 1311 accept 0 ALIGNMENT 994 Y12-6e15.q1k chr16 1247 36 345288 346517 C 1212 95.38 1291 accept 0 ALIGNMENT 834 Y12-6e15.p1k chr16 11 989 343979 344952 F 979 97.14 1309 accept 0 ALIGNMENT 872 Y12-6e16.p1k chr07 19 1041 674603 675620 F 1023 96.48 1320 accept 0 ALIGNMENT 1027 Y12-6e16.q1k chr07 1293 29 679586 680862 C 1265 94.78 1343 accept 0 ALIGNMENT 359 Y12-6e17.q1k chr07 33 438 644417 644823 F 406 98.28 1303 accept 0 ALIGNMENT 0 Y12-6e17.p1k chr16 699 62 731750 731749 C 638 0.00 1343 reject_low 1 ALIGNMENT 141 Y12-6e17.p1k chr16 940 700 731508 731749 C 241 88.38 1343 reject_low 1 ALIGNMENT 732 Y12-6e17.p1k chr07 940 35 648673 649576 C 906 95.92 1343 accept 0 ALIGNMENT 30 Y12-6e18.q1k chrm 597 632 11058 11093 F 36 97.22 1359 reject_low 9 ALIGNMENT 0 Y12-6e18.q1k chrm 596 62 116 115 C 535 0.00 1359 reject_low 6 ALIGNMENT 0 Y12-6e18.q1k chrm 815 647 57014 57013 C 169 0.00 1359 reject_low 2 ALIGNMENT 0 Y12-6e18.q1k chrm 626 554 19393 19402 C 73 0.00 1359 accept 0 ALIGNMENT 0 Y12-6e18.q1k chrm 596 62 9521 9520 C 535 0.00 1359 reject_low 4 ALIGNMENT 35 Y12-6e18.q1k chrm 636 597 76 115 C 40 97.50 1359 reject_low 6 ALIGNMENT 0 Y12-6e18.q1k chrm 638 815 83105 83104 F 178 0.00 1359 reject_low 7 ALIGNMENT 0 Y12-6e18.q1k chrm 578 62 57078 57077 C 517 0.00 1359 reject_low 2 ALIGNMENT 0 Y12-6e18.q1k chrm 596 62 52363 52362 C 535 0.00 1359 reject_low 5 ALIGNMENT 39 Y12-6e18.q1k chrm 646 579 57013 57077 C 68 88.24 1359 reject_low 2 ALIGNMENT 33 Y12-6e18.q1k chrm 597 637 83065 83105 F 41 95.12 1359 reject_low 7 ALIGNMENT 0 Y12-6e18.q1k chrm 630 815 80546 80545 F 186 0.00 1359 reject_low 3 ALIGNMENT 802 Y12-6e18.p1k chrm 13 1097 15221 16303 F 1085 95.76 1297 accept 0 ALIGNMENT 0 Y12-6e18.q1k chrm 815 637 77 76 C 179 0.00 1359 reject_low 6 ALIGNMENT 232 Y12-6e18.q1k chrm 553 31 19403 19932 C 523 88.53 1359 accept 0 ALIGNMENT 59 Y12-6e18.q1k chrm 643 577 31025 31090 C 67 97.01 1359 reject_low 1 ALIGNMENT 35 Y12-6e18.q1k chrm 641 597 52319 52362 C 45 95.56 1359 reject_low 5 ALIGNMENT 0 Y12-6e18.q1k chrm 633 815 11093 11092 F 183 0.00 1359 reject_low 9 ALIGNMENT 0 Y12-6e18.q1k chrm 815 630 71213 71212 C 186 0.00 1359 reject_low 10 ALIGNMENT 0 Y12-6e18.q1k chrm 596 62 71245 71244 C 535 0.00 1359 reject_low 10 ALIGNMENT 26 Y12-6e18.q1k chrm 629 597 71212 71244 C 33 100.00 1359 reject_low 10 ALIGNMENT 31 Y12-6e18.q1k chrm 597 633 11517 11553 F 37 97.30 1359 reject_low 8 ALIGNMENT 0 Y12-6e18.q1k chrm 815 644 31026 31025 C 172 0.00 1359 reject_low 1 ALIGNMENT 32 Y12-6e18.q1k chrm 582 629 80500 80546 F 48 91.67 1359 reject_low 3 ALIGNMENT 0 Y12-6e18.q1k chrm 576 62 31091 31090 C 515 0.00 1359 reject_low 1 ALIGNMENT 0 Y12-6e18.q1k chrm 62 596 11517 11516 F 535 0.00 1359 reject_low 8 ALIGNMENT 0 Y12-6e18.q1k chrm 62 596 83065 83064 F 535 0.00 1359 reject_low 7 ALIGNMENT 0 Y12-6e18.q1k chrm 62 596 11058 11057 F 535 0.00 1359 reject_low 9 ALIGNMENT 105 Y12-6e18.q1k chrm 842 627 19176 19392 C 216 91.20 1359 accept 0 ALIGNMENT 0 Y12-6e18.q1k chrm 634 815 11553 11552 F 182 0.00 1359 reject_low 8 ALIGNMENT 0 Y12-6e18.q1k chrm 62 581 80500 80499 F 520 0.00 1359 reject_low 3 ALIGNMENT 0 Y12-6e18.q1k chrm 815 644 9475 9474 C 172 0.00 1359 reject_low 4 ALIGNMENT 0 Y12-6e18.q1k chrm 815 642 52320 52319 C 174 0.00 1359 reject_low 5 ALIGNMENT 34 Y12-6e18.q1k chrm 643 597 9474 9520 C 47 91.49 1359 reject_low 4 ALIGNMENT 908 Y12-6e19.p1k chr16 17 1105 807838 808923 F 1089 95.87 1309 ambiguous_trans 9 ALIGNMENT 909 Y12-6e19.p1k chr04 17 1105 648694 649779 F 1089 95.96 1309 ambiguous_trans 2 ALIGNMENT 1075 Y12-6e19.q1k chr14 38 1303 94860 96130 F 1266 96.76 1316 accept 0 ALIGNMENT 909 Y12-6e19.p1k chr14 17 1105 99805 100890 F 1089 95.96 1309 ambiguous_trans 4 ALIGNMENT 902 Y12-6e19.p1k chr13 17 1105 375897 376982 F 1089 95.68 1309 ambiguous_trans 20 ALIGNMENT 901 Y12-6e19.p1k chr01 17 1105 163439 164525 F 1089 95.68 1309 ambiguous_trans 21 ALIGNMENT 900 Y12-6e19.p1k chr10 1105 17 474016 475101 C 1089 95.78 1309 ambiguous_trans 22 ALIGNMENT 908 Y12-6e19.p1k chr05 17 1105 495692 496777 F 1089 95.87 1309 ambiguous_trans 8 ALIGNMENT 906 Y12-6e19.p1k chr13 1105 17 197970 199055 C 1089 95.96 1309 ambiguous_trans 13 ALIGNMENT 906 Y12-6e19.p1k chr02 1105 17 261209 262294 C 1089 95.96 1309 ambiguous_trans 10 ALIGNMENT 909 Y12-6e19.p1k chr15 1105 17 119341 120426 C 1089 96.05 1309 ambiguous_trans 5 ALIGNMENT 908 Y12-6e19.p1k chr05 17 1105 446593 447678 F 1089 95.87 1309 ambiguous_trans 7 ALIGNMENT 908 Y12-6e19.p1k chr13 17 1076 360199 361258 F 1060 96.51 1309 ambiguous_trans 14 ALIGNMENT 906 Y12-6e19.p1k chr13 1105 17 185803 186888 C 1089 95.96 1309 ambiguous_trans 12 ALIGNMENT 905 Y12-6e19.p1k chr08 17 1105 546805 547890 F 1089 95.78 1309 ambiguous_trans 16 ALIGNMENT 899 Y12-6e19.p1k chr16 1105 17 846047 847135 C 1089 95.78 1309 ambiguous_trans 23 ALIGNMENT 903 Y12-6e19.p1k chr15 1105 17 596454 597539 C 1089 95.87 1309 ambiguous_trans 19 ALIGNMENT 905 Y12-6e19.p1k chr04 17 1105 989916 991001 F 1089 95.78 1309 ambiguous_trans 15 ALIGNMENT 903 Y12-6e19.p1k chr10 1105 17 479600 480685 C 1089 95.87 1309 ambiguous_trans 18 ALIGNMENT 905 Y12-6e19.p1k chr12 17 1105 218282 219367 F 1089 95.78 1309 ambiguous_trans_ua 17 ALIGNMENT 908 Y12-6e19.p1k chr04 17 1105 881495 882580 F 1089 95.87 1309 ambiguous_trans 6 ALIGNMENT 915 Y12-6e19.p1k chr02 1105 17 222675 223760 C 1089 96.24 1309 ambiguous_trans 1 ALIGNMENT 887 Y12-6e19.p1k chr16 17 1105 853826 854911 F 1089 95.22 1309 ambiguous_trans 24 ALIGNMENT 909 Y12-6e19.p1k chr07 17 1105 565044 566129 F 1089 95.96 1309 ambiguous_trans 3 ALIGNMENT 906 Y12-6e19.p1k chr04 1105 17 1097401 1098486 C 1089 95.96 1309 ambiguous_trans 11 ALIGNMENT 953 Y12-6e20.p1k chr16 29 1135 94069 95184 F 1107 96.12 1242 accept 0 ALIGNMENT 0 Y12-6e20.q1k chr13 62 191 632352 632351 F 130 0.00 1337 reject_low 1 ALIGNMENT 523 Y12-6e20.q1k chr13 192 1112 632352 633272 F 921 87.62 1337 reject_low 1 ALIGNMENT 936 Y12-6e20.q1k chr16 1186 31 97616 98788 C 1156 95.07 1337 accept 0 ALIGNMENT 995 Y12-6e21.q1k chr12 1168 37 368547 369672 C 1132 97.61 1264 accept 0 ALIGNMENT 821 Y12-6e21.p1k chr12 15 947 364433 365357 F 933 97.75 1257 accept 0 ALIGNMENT 790 Y12-6e22.q1k chrm 30 899 16488 17354 F 870 99.08 1360 reject_bad_break 0 ALIGNMENT 0 Y12-6e22.p1k chrm 224 104 20169 20303 C 121 0.00 1465 reject_bad_break 0 ALIGNMENT 66 Y12-6e22.p1k chrm 307 225 20086 20168 C 83 97.59 1465 reject_bad_break 0 ALIGNMENT 30 Y12-6e22.p1k chrm 103 72 20304 20335 C 32 100.00 1465 reject_bad_break 0 ALIGNMENT 0 Y12-6e22.p1k chrm 380 308 20087 20086 C 73 0.00 1465 reject_bad_break 0 ALIGNMENT 989 Y12-6e23.q1k chr10 37 1165 273189 274317 F 1129 96.90 1249 accept 0 ALIGNMENT 1040 Y12-6e23.p1k chr10 1194 20 276418 277598 C 1175 96.94 1257 accept 0 ALIGNMENT 967 Y12-6e24.p1k chr10 28 1096 609033 610113 F 1069 97.75 1218 accept 0 ALIGNMENT 1001 Y12-6e24.q1k chr10 1290 35 611738 613000 C 1256 94.75 1299 accept 0 ALIGNMENT 504 Y12-6f01.p1k chr12 711 23 460213 460923 C 689 92.74 1324 accept 0 ALIGNMENT 853 Y12-6f01.q1k chr12 30 974 465908 466851 F 945 97.14 1377 reject_low 1 ALIGNMENT 0 Y12-6f01.p1k chr12 587 371 451420 451419 C 217 0.00 1324 reject_low 2 ALIGNMENT 853 Y12-6f01.q1k chr12 30 974 456771 457714 F 945 97.14 1377 accept 0 ALIGNMENT 265 Y12-6f01.p1k chr12 370 23 451419 451786 C 348 93.39 1324 reject_low 2 ALIGNMENT 265 Y12-6f03.p1k chr12 643 1238 64294 64883 F 596 82.72 1241 reject_low 1 ALIGNMENT 0 Y12-6f03.p1k chr09 885 860 69155 69154 C 26 0.00 1241 reject_low 5 ALIGNMENT 0 Y12-6f03.p1k chr11 863 885 618015 618014 F 23 0.00 1241 reject_low 7 ALIGNMENT 0 Y12-6f03.p1k chr12 643 62 499177 499176 C 582 0.00 1241 reject_low 9 ALIGNMENT 131 Y12-6f03.p1k chr12 871 644 498949 499176 C 228 85.96 1241 reject_low 9 ALIGNMENT 0 Y12-6f03.p1k chr11 62 869 617795 617794 F 808 0.00 1241 reject_low 10 ALIGNMENT 0 Y12-6f03.p1k chr09 642 62 69371 69370 C 581 0.00 1241 reject_low 5 ALIGNMENT 0 Y12-6f03.p1k chr12 62 642 64750 64749 F 581 0.00 1241 reject_low 3 ALIGNMENT 0 Y12-6f03.p1k chr12 62 674 65010 65009 F 613 0.00 1241 reject_low 6 ALIGNMENT 0 Y12-6f03.p1k chr12 62 642 64522 64521 F 581 0.00 1241 reject_low 4 ALIGNMENT 0 Y12-6f03.p1k chr12 871 872 499177 498948 C 0 0.00 1241 reject_low 9 ALIGNMENT 924 Y12-6f03.q1k chr12 1079 35 68933 69990 C 1045 97.03 1292 reject_bad_break 0 ALIGNMENT 0 Y12-6f03.p1k chr11 62 642 617796 617795 F 581 0.00 1241 reject_low 7 ALIGNMENT 117 Y12-6f03.p1k chr12 675 872 65010 65207 F 198 86.87 1241 reject_low 6 ALIGNMENT 101 Y12-6f03.p1k chr11 643 862 617796 618015 F 220 82.27 1241 reject_low 7 ALIGNMENT 68 Y12-6f03.p1k chr11 870 1078 617795 618003 F 209 78.95 1241 reject_low 10 ALIGNMENT 0 Y12-6f03.p1k chr12 1028 1167 64907 65042 F 140 0.00 1241 reject_low 4 ALIGNMENT 170 Y12-6f03.p1k chr12 643 1101 64750 65208 F 459 79.74 1241 reject_low 3 ALIGNMENT 0 Y12-6f03.p1k chr09 869 62 69372 69371 C 808 0.00 1241 reject_low 8 ALIGNMENT 102 Y12-6f03.p1k chr12 1099 872 498949 499176 C 228 82.89 1241 reject_low 9 ALIGNMENT 258 Y12-6f03.p1k chr12 643 1027 64522 64906 F 385 89.09 1241 reject_low 4 ALIGNMENT 82 Y12-6f03.p1k chr09 1091 870 69150 69371 C 222 80.18 1241 reject_low 8 ALIGNMENT 132 Y12-6f03.p1k chr12 871 1234 64066 64423 F 364 80.77 1241 reject_low 2 ALIGNMENT 0 Y12-6f03.p1k chr12 62 870 64066 64065 F 809 0.00 1241 reject_low 2 ALIGNMENT 0 Y12-6f03.p1k chr12 62 642 64294 64293 F 581 0.00 1241 reject_low 1 ALIGNMENT 0 Y12-6f03.p1k chr12 1124 1167 64546 65042 F 44 0.00 1241 reject_bad_break 0 ALIGNMENT 116 Y12-6f03.p1k chr09 859 643 69154 69370 C 217 84.79 1241 reject_low 5 ALIGNMENT 22 Y12-6f03.p1k chr12 1168 1238 65043 65111 F 71 78.87 1241 reject_bad_break 0 reject_low 4 ALIGNMENT 918 Y12-6f03.p1k chr12 21 1123 63441 64545 F 1103 95.65 1241 reject_bad_break 0 ALIGNMENT 963 Y12-6f04.q1k chr13 1172 32 598053 599198 C 1141 95.79 1336 accept 0 ALIGNMENT 862 Y12-6f04.p1k chr13 16 970 593204 594150 F 955 97.70 1286 accept 0 ALIGNMENT 995 Y12-6f05.p1k chr07 1189 24 46792 47970 C 1166 96.23 1273 accept 0 ALIGNMENT 912 Y12-6f05.q1k chr07 35 1118 42565 43663 F 1084 96.40 1406 accept 0 ALIGNMENT 887 Y12-6f06.p1k chr13 1038 16 134273 135287 C 1023 96.77 1348 accept 0 ALIGNMENT 935 Y12-6f07.q1k chr02 33 1127 673291 674396 F 1095 96.89 1376 accept_chi 1 ALIGNMENT 989 Y12-6f07.p1k chr07 1254 23 576399 577620 C 1232 95.13 1301 accept_chi 0 ALIGNMENT 924 Y12-6f08.q1k chr15 30 1145 279963 281065 F 1116 95.79 1348 accept 0 ALIGNMENT 838 Y12-6f08.p1k chr15 981 18 282648 283609 C 964 96.78 1291 accept 0 ALIGNMENT 843 Y12-6f10.p1k chr04 974 10 1051538 1052501 C 965 96.99 1275 accept 0 ALIGNMENT 0 Y12-6f11.q1k chr10 482 62 75170 75169 C 421 0.00 1665 reject_low 1 ALIGNMENT 182 Y12-6f11.q1k chr10 745 483 74908 75169 C 263 90.49 1665 reject_low 1 ALIGNMENT 0 Y12-6f11.q1k chr10 811 746 74909 74908 C 66 0.00 1665 reject_low 1 ALIGNMENT 792 Y12-6f11.q1k chr12 31 944 856604 857507 F 914 97.37 1665 accept 0 ALIGNMENT 569 Y12-6f11.p1k chr12 698 11 861939 862623 C 688 95.20 1220 accept 0 ALIGNMENT 749 Y12-6f12.p1k chr12 104 896 489754 490543 F 793 98.61 1351 reject_low 2 ALIGNMENT 904 Y12-6f12.p1k chr12 23 1006 460841 461816 F 984 98.17 1351 accept 1 ALIGNMENT 900 Y12-6f12.q1k chr12 1177 31 463636 464786 C 1147 93.72 1321 accept 1 ALIGNMENT 900 Y12-6f12.q1k chr12 1177 31 454499 455649 C 1147 93.72 1321 accept 0 ALIGNMENT 904 Y12-6f12.p1k chr12 23 1006 451704 452679 F 984 98.17 1351 accept 0 ALIGNMENT 0 Y12-6f12.p1k chr12 62 103 489754 489753 F 42 0.00 1351 reject_low 2 ALIGNMENT 870 Y12-6f13.q1k chr02 30 1033 145167 146184 F 1004 96.81 1394 accept 0 ALIGNMENT 773 Y12-6f13.p1k chr02 870 18 149850 150706 C 853 97.89 1250 accept 0 ALIGNMENT 20 Y12-6f13.p1k chr02 358 383 353620 353645 F 26 100.00 1250 reject_low 2 ALIGNMENT 20 Y12-6f13.p1k chr01 383 358 31494 31519 C 26 100.00 1250 reject_low 1 ALIGNMENT 0 Y12-6f13.p1k chr02 62 357 353620 353619 F 296 0.00 1250 reject_low 2 ALIGNMENT 0 Y12-6f13.p1k chr01 702 384 31495 31494 C 319 0.00 1250 reject_low 1 ALIGNMENT 0 Y12-6f13.p1k chr02 384 702 353645 353644 F 319 0.00 1250 reject_low 2 ALIGNMENT 0 Y12-6f13.p1k chr01 357 62 31520 31519 C 296 0.00 1250 reject_low 1 ALIGNMENT 0 Y12-6f14.p1k chr08 62 848 451326 451325 F 787 0.00 1363 reject_low 1 ALIGNMENT 86 Y12-6f14.p1k chr08 849 967 451326 451444 F 119 91.60 1363 reject_low 1 ALIGNMENT 878 Y12-6f14.p1k chr07 16 962 1000098 1001044 F 947 98.10 1363 accept 0 ALIGNMENT 999 Y12-6f15.q1k chr04 33 1134 1140993 1142096 F 1102 98.09 1344 accept 0 ALIGNMENT 922 Y12-6f15.p1k chr04 1155 16 1143868 1145004 C 1140 95.35 1236 accept 0 ALIGNMENT 1021 Y12-6f16.p1k chr14 22 1186 505615 506784 F 1165 96.74 1224 accept 0 ALIGNMENT 1014 Y12-6f16.q1k chr14 1231 32 508464 509661 C 1200 95.67 1359 accept 0 ALIGNMENT 979 Y12-6f17.q1k chr07 36 1174 138187 139335 F 1139 95.79 1349 accept 0 ALIGNMENT 1013 Y12-6f17.p1k chr07 1209 24 141362 142548 C 1186 96.37 1273 accept 0 ALIGNMENT 1021 Y12-6f18.p1k chr12 1275 25 166470 167711 C 1251 95.44 1276 accept 0 ALIGNMENT 1001 Y12-6f19.p1k chr08 17 1188 49740 50927 F 1172 96.16 1260 accept 0 ALIGNMENT 889 Y12-6f19.q1k chr08 1079 25 52649 53699 C 1055 95.73 1362 accept 0 ALIGNMENT 1041 Y12-6f20.q1k chr04 29 1198 1475627 1476788 F 1170 97.18 1332 accept 0 ALIGNMENT 931 Y12-6f20.p1k chr04 1215 18 1478363 1479547 C 1198 94.24 1255 accept 0 ALIGNMENT 977 Y12-6f21.p1k chr14 1080 20 117127 118184 C 1061 98.02 1195 accept 0 ALIGNMENT 922 Y12-6f21.q1k chr14 28 1144 113307 114412 F 1117 95.79 1335 accept 0 ALIGNMENT 908 Y12-6f22.p1k chr16 1111 34 342266 343337 C 1078 96.20 1184 accept 0 ALIGNMENT 972 Y12-6f23.q1k chr03 33 1246 163996 165187 F 1214 95.30 1289 accept 0 ALIGNMENT 914 Y12-6f23.p1k chr03 1199 17 166533 167699 C 1183 94.42 1268 accept 0 ALIGNMENT 983 Y12-6f24.p1k chr15 1220 23 612609 613819 C 1198 95.66 1229 accept 0 ALIGNMENT 801 Y12-6f24.q1k chr15 32 1034 608543 609539 F 1003 95.31 1274 accept 0 ALIGNMENT 611 Y12-6g03.q1k chr11 33 845 107805 108617 F 813 92.37 1404 accept 0 ALIGNMENT 698 Y12-6g03.p1k chr11 931 35 112604 113490 C 897 91.53 1364 accept 0 ALIGNMENT 952 Y12-6g04.q1k chr02 26 1195 394907 396100 F 1170 93.93 1325 accept 0 ALIGNMENT 967 Y12-6g05.q1k chr04 38 1154 816029 817157 F 1117 96.51 1335 accept 0 ALIGNMENT 992 Y12-6g05.p1k chr04 1198 24 819585 820770 C 1175 96.26 1244 accept 0 ALIGNMENT 850 Y12-6g06.p1k chr10 975 23 245226 246182 C 953 97.27 1219 accept 0 ALIGNMENT 975 Y12-6g06.q1k chr10 34 1158 241768 242906 F 1125 96.71 1338 accept 0 ALIGNMENT 951 Y12-6g07.q1k chr15 1181 33 396711 397873 C 1149 95.30 1290 accept 0 ALIGNMENT 753 Y12-6g07.p1k chr15 10 910 392808 393702 F 901 95.78 1358 accept 0 ALIGNMENT 957 Y12-6g09.q1k chr12 1194 33 454747 455923 C 1162 95.70 1418 accept 0 ALIGNMENT 761 Y12-6g09.p1k chr12 113 902 489754 490543 F 790 98.99 1328 reject_low 2 ALIGNMENT 0 Y12-6g09.p1k chr12 62 112 489754 489753 F 51 0.00 1328 reject_low 2 ALIGNMENT 943 Y12-6g09.p1k chr12 17 1073 451688 452733 F 1057 97.54 1328 accept 0 ALIGNMENT 957 Y12-6g09.q1k chr12 1194 33 463884 465060 C 1162 95.70 1418 accept 1 ALIGNMENT 943 Y12-6g09.p1k chr12 17 1073 460825 461870 F 1057 97.54 1328 accept 1 ALIGNMENT 0 Y12-6g11.q1k chr13 865 62 588686 588685 C 804 0.00 1316 reject_low 1 ALIGNMENT 21 Y12-6g11.q1k chr13 931 866 588620 588685 C 66 86.36 1316 reject_low 1 ALIGNMENT 975 Y12-6g11.q1k chr12 1158 35 123214 124355 C 1124 97.06 1316 accept 0 ALIGNMENT 785 Y12-6g11.p1k chr12 10 919 119495 120392 F 910 97.58 1338 accept 0 ALIGNMENT 859 Y12-6g13.q1k chr05 999 37 102537 103515 C 963 97.72 1201 accept 0 ALIGNMENT 598 Y12-6g13.p1k chr05 1 753 98653 99401 F 753 94.16 1308 accept 0 ALIGNMENT 790 Y12-6g14.p1k chr03 927 16 281726 282634 C 912 96.82 1338 accept 0 ALIGNMENT 989 Y12-6g14.q1k chr03 31 1194 277372 278540 F 1164 96.48 1313 accept 0 ALIGNMENT 953 Y12-6g15.q1k chr04 31 1185 997774 998935 F 1155 94.89 1300 accept 0 ALIGNMENT 864 Y12-6g15.p1k chr04 1008 15 998327 999320 C 994 96.68 1317 accept 0 ALIGNMENT 1035 Y12-6g17.q1k chr09 37 1165 16766 17894 F 1129 97.70 1300 reject_low 1 ALIGNMENT 247 Y12-6g17.p1k chr09 1271 770 20747 21250 C 502 84.86 1295 reject_low 1 ALIGNMENT 567 Y12-6g17.q1k chr07 71 1083 1067244 1068256 F 1013 86.08 1300 reject_low 3 ALIGNMENT 996 Y12-6g17.q1k chr15 37 1165 22506 23634 F 1129 96.55 1300 reject_low 2 ALIGNMENT 1035 Y12-6g17.q1k chr10 37 1165 16749 17877 F 1129 97.70 1300 accept 0 ALIGNMENT 268 Y12-6g17.p1k chr15 1271 770 26502 27005 C 502 86.25 1295 reject_low 2 ALIGNMENT 0 Y12-6g17.p1k chr09 769 62 21251 21250 C 708 0.00 1295 reject_low 1 ALIGNMENT 1010 Y12-6g17.p1k chr10 1271 24 20727 21975 C 1248 94.79 1295 accept 0 ALIGNMENT 0 Y12-6g17.p1k chr15 769 62 27006 27005 C 708 0.00 1295 reject_low 2 ALIGNMENT 0 Y12-6g18.p1k chr12 880 800 215102 215101 C 81 0.00 1329 ambiguous_trans_ua 12 ALIGNMENT 641 Y12-6g18.p1k chr04 25 799 1100887 1101667 F 775 96.26 1329 ambiguous_trans 15 ALIGNMENT 667 Y12-6g18.p1k chr08 799 25 543630 544404 C 775 97.29 1329 ambiguous_trans 10 ALIGNMENT 0 Y12-6g18.p1k chr05 62 486 443365 443364 F 425 0.00 1329 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-6g18.p1k chr05 880 820 443394 443393 C 61 0.00 1329 ambiguous_trans 19 ALIGNMENT 519 Y12-6g18.p1k chr05 819 25 443393 444192 C 795 90.44 1329 ambiguous_trans 19 ALIGNMENT 0 Y12-6g18.p1k chr07 820 880 541689 541688 F 61 0.00 1329 ambiguous_trans 7 ALIGNMENT 721 Y12-6g18.p1k chr02 22 799 264695 265472 F 778 99.49 1329 ambiguous_trans 6 ALIGNMENT 599 Y12-6g18.p1k chr15 25 825 122827 123633 F 801 93.51 1329 ambiguous_trans 14 ALIGNMENT 692 Y12-6g18.p1k chr07 22 819 540886 541689 F 798 97.49 1329 ambiguous_trans 7 ALIGNMENT 0 Y12-6g18.p1k chr01 880 820 165828 165827 C 61 0.00 1329 ambiguous_trans 22 ALIGNMENT 724 Y12-6g18.p1k chr07 799 22 817418 818195 C 778 99.61 1329 ambiguous_trans 4 ALIGNMENT 641 Y12-6g18.p1k chr16 25 799 849536 850316 F 775 96.26 1329 ambiguous_trans 16 ALIGNMENT 745 Y12-6g18.p1k chr13 819 22 357004 357801 C 798 99.62 1329 ambiguous_trans 2 ALIGNMENT 21 Y12-6g18.p1k chr05 487 514 443365 443392 F 28 92.86 1329 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-6g18.p1k chr02 800 880 265472 265471 F 81 0.00 1329 ambiguous_trans 6 ALIGNMENT 0 Y12-6g18.p1k chr12 880 821 475975 475974 C 60 0.00 1329 ambiguous_trans 17 ALIGNMENT 0 Y12-6g18.p1k chr13 880 820 357005 357004 C 61 0.00 1329 ambiguous_trans 2 ALIGNMENT 0 Y12-6g18.p1k chr08 880 800 543631 543630 C 81 0.00 1329 ambiguous_trans 10 ALIGNMENT 721 Y12-6g18.p1k chr14 819 22 96610 97407 C 798 98.62 1329 ambiguous_trans 3 ALIGNMENT 530 Y12-6g18.p1k chr12 820 25 475974 476774 C 796 90.83 1329 ambiguous_trans 17 ALIGNMENT 0 Y12-6g18.p1k chr15 826 880 123633 123632 F 55 0.00 1329 ambiguous_trans 14 ALIGNMENT 25 Y12-6g18.p1k chr16 645 488 850353 850508 C 158 75.32 1329 ambiguous_trans_ua 24 ALIGNMENT 0 Y12-6g18.p1k chr14 880 820 96611 96610 C 61 0.00 1329 ambiguous_trans 3 ALIGNMENT 0 Y12-6g18.p1k chr16 800 880 850316 850315 F 81 0.00 1329 ambiguous_trans 16 ALIGNMENT 0 Y12-6g18.p1k chr13 800 880 190063 190062 F 81 0.00 1329 ambiguous_trans 11 ALIGNMENT 0 Y12-6g18.p1k chr05 515 880 443392 443391 F 366 0.00 1329 ambiguous_trans_ua 25 ALIGNMENT 0 Y12-6g18.p1k chr13 799 880 202234 202233 F 82 0.00 1329 ambiguous_trans 21 ALIGNMENT 213 Y12-6g18.p1k chr01 819 488 165827 166163 C 332 90.36 1329 ambiguous_trans 22 ALIGNMENT 724 Y12-6g18.p1k chr15 22 799 599937 600714 F 778 99.61 1329 ambiguous_trans 5 ALIGNMENT 0 Y12-6g18.p1k chr16 880 824 850622 850621 C 57 0.00 1329 ambiguous_trans 9 ALIGNMENT 520 Y12-6g18.p1k chr05 625 22 492691 493294 C 604 97.19 1329 ambiguous_trans 20 ALIGNMENT 0 Y12-6g18.p1k chr01 880 820 160240 160239 C 61 0.00 1329 ambiguous_trans 18 ALIGNMENT 0 Y12-6g18.p1k chr07 62 684 817278 817277 F 623 0.00 1329 ambiguous_trans 23 ALIGNMENT 0 Y12-6g18.p1k chr10 820 880 483886 483885 F 61 0.00 1329 ambiguous_trans 8 ALIGNMENT 0 Y12-6g18.p1k chr16 880 646 850354 850353 C 235 0.00 1329 ambiguous_trans_ua 24 ALIGNMENT 659 Y12-6g18.p1k chr13 799 22 372716 373499 C 778 96.92 1329 ambiguous_trans 13 ALIGNMENT 0 Y12-6g18.p1k chr13 880 800 372717 372716 C 81 0.00 1329 ambiguous_trans 13 ALIGNMENT 667 Y12-6g18.p1k chr13 25 799 189289 190063 F 775 97.29 1329 ambiguous_trans 11 ALIGNMENT 0 Y12-6g18.p1k chr07 880 800 817419 817418 C 81 0.00 1329 ambiguous_trans 4 ALIGNMENT 0 Y12-6g18.p1k chr07 797 880 817387 817386 F 84 0.00 1329 ambiguous_trans 23 ALIGNMENT 906 Y12-6g18.q1k chr05 34 1100 426276 427356 F 1067 96.16 1257 accept 0 ALIGNMENT 57 Y12-6g18.p1k chr07 685 796 817278 817387 F 112 86.61 1329 ambiguous_trans 23 ALIGNMENT 659 Y12-6g18.p1k chr12 799 22 215101 215884 C 778 96.92 1329 ambiguous_trans_ua 12 ALIGNMENT 0 Y12-6g18.p1k chr05 880 626 492692 492691 C 255 0.00 1329 ambiguous_trans 20 ALIGNMENT 528 Y12-6g18.p1k chr01 819 25 160239 161038 C 795 90.82 1329 ambiguous_trans 18 ALIGNMENT 0 Y12-6g18.p1k chr04 800 880 1101667 1101666 F 81 0.00 1329 ambiguous_trans 15 ALIGNMENT 0 Y12-6g18.p1k chr02 820 880 226955 226954 F 61 0.00 1329 ambiguous_trans 1 ALIGNMENT 751 Y12-6g18.p1k chr02 22 819 226158 226955 F 798 99.87 1329 ambiguous_trans 1 ALIGNMENT 0 Y12-6g18.p1k chr01 487 62 166164 166163 C 426 0.00 1329 ambiguous_trans 22 ALIGNMENT 0 Y12-6g18.p1k chr16 487 62 850509 850508 C 426 0.00 1329 ambiguous_trans_ua 24 ALIGNMENT 663 Y12-6g18.p1k chr16 823 25 850621 851425 C 799 96.25 1329 ambiguous_trans 9 ALIGNMENT 0 Y12-6g18.p1k chr15 800 880 600714 600713 F 81 0.00 1329 ambiguous_trans 5 ALIGNMENT 498 Y12-6g18.p1k chr13 25 798 201456 202234 F 774 90.18 1329 ambiguous_trans 21 ALIGNMENT 692 Y12-6g18.p1k chr10 22 819 483083 483886 F 798 97.49 1329 ambiguous_trans 8 ALIGNMENT 80 Y12-6g19.q1k vc_4 301 173 5605 5732 C 129 88.37 1367 reject_vc 2 ALIGNMENT 0 Y12-6g19.q1k vc_1 302 803 2739 2740 F 502 0.00 1367 reject_vc 0 ALIGNMENT 48 Y12-6g19.q1k vc_4 1010 804 5400 5600 C 207 76.81 1367 reject_vc 2 ALIGNMENT 50 Y12-6g19.q1k vc_4 173 255 6433 6514 F 83 87.95 1367 reject_low 4 ALIGNMENT 0 Y12-6g19.q1k vc_2 302 803 2372 2373 F 502 0.00 1367 reject_vc 1 ALIGNMENT 80 Y12-6g19.q1k vc_2 173 301 2244 2371 F 129 88.37 1367 reject_vc 1 ALIGNMENT 0 Y12-6g19.q1k vc_4 803 302 5601 5604 C 502 0.00 1367 reject_vc 2 ALIGNMENT 48 Y12-6g19.q1k vc_1 804 1010 2741 2941 F 207 76.81 1367 reject_vc 0 ALIGNMENT 48 Y12-6g19.q1k vc_2 804 1010 2374 2574 F 207 76.81 1367 reject_vc 1 ALIGNMENT 80 Y12-6g19.q1k vc_1 173 301 2611 2738 F 129 88.37 1367 reject_vc 0 ALIGNMENT 50 Y12-6g19.q1k vc_4 173 255 206 287 F 83 87.95 1367 reject_low 3 ALIGNMENT 263 Y12-6g20.q1k chr05 48 652 426287 426892 F 605 82.48 1430 accept_chi 1 ALIGNMENT 410 Y12-6g20.p1k chr16 239 934 94239 94921 F 696 88.07 1411 accept_chi 0 ALIGNMENT 704 Y12-6g21.p1k chr07 897 11 1022924 1023807 C 887 94.81 1322 accept 0 ALIGNMENT 1032 Y12-6g21.q1k chr07 34 1262 1019539 1020757 F 1229 96.50 1271 accept 0 ALIGNMENT 0 Y12-6g22.p1k chr13 781 326 97955 97954 C 456 0.00 1205 reject_low 1 ALIGNMENT 137 Y12-6g22.p1k chr13 325 53 97954 98226 C 273 83.52 1205 reject_low 1 ALIGNMENT 777 Y12-6g22.q1k chr13 34 869 18437 19273 F 836 98.80 1307 accept 0 ALIGNMENT 788 Y12-6g22.p1k chr13 1027 26 21340 22357 C 1002 93.71 1205 accept 0 ALIGNMENT 985 Y12-6g23.q1k chr02 36 1226 707930 709112 F 1191 96.14 1232 accept 0 ALIGNMENT 950 Y12-6g23.p1k chr02 1160 24 711440 712564 C 1137 95.95 1188 accept 0 ALIGNMENT 552 Y12-6g24.q1k chr05 699 36 428875 429553 C 664 96.39 1125 accept 0 ALIGNMENT 916 Y12-6g24.p1k chr05 17 1115 424125 425207 F 1099 96.82 1209 accept 0 ALIGNMENT 111 Y12-6g24.p1k chr07 197 23 148235 148410 C 175 88.57 1209 reject_low 1 ALIGNMENT 0 Y12-6g24.p1k chr07 809 198 148236 148235 C 612 0.00 1209 reject_low 1 ALIGNMENT 981 Y12-6h01.q1k chr02 1118 30 250408 251499 C 1089 97.52 1334 accept 0 ALIGNMENT 722 Y12-6h01.p1k chr02 6 813 249093 249894 F 808 97.77 1347 accept 0 ALIGNMENT 742 Y12-6h02.p1k chr08 2 884 480087 480958 F 883 96.38 1282 accept 0 ALIGNMENT 985 Y12-6h03.q1k chr08 29 1202 77442 78599 F 1174 96.68 1394 accept 0 ALIGNMENT 243 Y12-6h04.q1k chr07 31 957 689407 690316 F 927 77.45 1350 accept 0 ALIGNMENT 900 Y12-6h05.q1k chr16 1091 28 24111 25183 C 1064 95.58 1336 accept 0 ALIGNMENT 690 Y12-6h05.p1k chr16 15 883 20636 21500 F 869 94.94 1364 accept 0 ALIGNMENT 990 Y12-6h06.p1k chr06 21 1180 163912 165085 F 1160 96.47 1229 accept 0 ALIGNMENT 954 Y12-6h07.q1k chr16 35 1241 618673 619879 F 1207 94.37 1370 accept 0 ALIGNMENT 915 Y12-6h07.p1k chr16 1162 16 621308 622457 C 1147 94.86 1301 accept 0 ALIGNMENT 36 Y12-6h08.q1k chr03 77 36 149662 149703 C 42 97.62 1370 reject_low 6 ALIGNMENT 0 Y12-6h08.q1k chr06 890 86 158533 158532 C 805 0.00 1370 reject_low 4 ALIGNMENT 33 Y12-6h08.q1k chr03 74 36 169749 169787 C 39 97.44 1370 reject_low 7 ALIGNMENT 37 Y12-6h08.q1k chr03 97 36 151683 151744 C 62 88.71 1370 reject_low 2 ALIGNMENT 0 Y12-6h08.q1k chr11 87 890 513327 513326 F 804 0.00 1370 reject_low 5 ALIGNMENT 0 Y12-6h08.q1k chr03 890 78 149663 149662 C 813 0.00 1370 reject_low 6 ALIGNMENT 0 Y12-6h08.q1k chr03 890 98 151684 151683 C 793 0.00 1370 reject_low 2 ALIGNMENT 0 Y12-6h08.q1k chr07 890 101 328072 328071 C 790 0.00 1370 reject_low 1 ALIGNMENT 53 Y12-6h08.q1k chr07 100 37 328071 328134 C 64 96.88 1370 reject_low 1 ALIGNMENT 40 Y12-6h08.q1k chr06 85 36 158532 158581 C 50 96.00 1370 reject_low 4 ALIGNMENT 0 Y12-6h08.q1k chr03 890 98 169375 169374 C 793 0.00 1370 reject_low 3 ALIGNMENT 974 Y12-6h08.q1k chr16 1235 42 803354 804550 C 1194 95.06 1370 accept 0 ALIGNMENT 37 Y12-6h08.q1k chr03 97 36 169374 169435 C 62 88.71 1370 reject_low 3 ALIGNMENT 903 Y12-6h08.p1k chr16 19 1062 800853 801902 F 1044 96.26 1278 accept 0 ALIGNMENT 0 Y12-6h08.q1k chr03 890 75 169750 169749 C 816 0.00 1370 reject_low 7 ALIGNMENT 38 Y12-6h08.q1k chr11 36 86 513277 513327 F 51 94.12 1370 reject_low 5 ALIGNMENT 990 Y12-6h09.q1k chr06 1160 34 150801 151939 C 1127 97.07 1469 accept 0 ALIGNMENT 870 Y12-6h09.p1k chr06 13 999 147352 148333 F 987 97.26 1319 accept 0 ALIGNMENT 824 Y12-6h10.p1k chr04 956 16 1113918 1114850 C 941 98.09 1330 accept 0 ALIGNMENT 998 Y12-6h11.q1k chr13 29 1162 573360 574495 F 1134 97.44 1398 accept 0 ALIGNMENT 866 Y12-6h11.p1k chr13 947 15 575174 576106 C 933 98.61 1317 accept 0 ALIGNMENT 22 Y12-6h13.p1k chr02 685 742 72348 72405 F 58 87.93 1269 reject_low 1 ALIGNMENT 983 Y12-6h13.p1k chr04 1195 20 271310 272496 C 1176 95.58 1269 accept 0 ALIGNMENT 0 Y12-6h13.p1k chr02 62 684 72348 72347 F 623 0.00 1269 reject_low 1 ALIGNMENT 0 Y12-6h13.p1k chr02 743 817 72405 72404 F 75 0.00 1269 reject_low 1 ALIGNMENT 1018 Y12-6h13.q1k chr04 36 1235 267485 268688 F 1200 96.33 1371 accept 0 ALIGNMENT 669 Y12-6h14.p1k chr15 1119 280 600750 601597 C 840 95.00 1245 accept 0 ALIGNMENT 848 Y12-6h15.p1k chr04 125 1235 567600 568727 F 1111 93.70 1299 accept 0 ALIGNMENT 1002 Y12-6h15.q1k chr04 1207 29 570655 571834 C 1179 96.27 1336 accept 0 ALIGNMENT 887 Y12-6h17.p1k chr02 18 1051 631985 633010 F 1034 97.20 1353 accept 0 ALIGNMENT 1025 Y12-6h17.q1k chr02 1192 33 636463 637629 C 1160 97.07 1315 accept 0 ALIGNMENT 937 Y12-6h18.p1k chr14 1155 16 249691 250848 C 1140 95.96 1258 accept 0 ALIGNMENT 1051 Y12-6h21.q1k chr07 1307 31 173717 175000 C 1277 95.14 1308 accept 0 ALIGNMENT 933 Y12-6h21.p1k chr07 17 1152 171187 172318 F 1136 95.69 1203 accept 0 ALIGNMENT 808 Y12-6h22.p1k chr10 1215 189 289657 290683 C 1027 93.77 1215 accept 0 ALIGNMENT 1005 Y12-6h23.p1k chr10 21 1139 485661 486784 F 1119 97.77 1167 accept 0 ALIGNMENT 0 Y12-6h23.p1k chr10 675 62 486350 486349 C 614 0.00 1167 reject_low 2 ALIGNMENT 32 Y12-6h23.p1k chr10 714 676 486310 486349 C 39 94.87 1167 reject_low 2 ALIGNMENT 0 Y12-6h23.p1k chr10 825 715 486311 486310 C 111 0.00 1167 reject_low 2 ALIGNMENT 881 Y12-6h23.q1k chr16 28 1092 923232 924292 F 1065 95.59 1287 ambiguous_tel 1 ALIGNMENT 928 Y12-6i02.q1k chr04 1272 33 1000780 1002026 C 1240 92.98 1369 accept 0 ALIGNMENT 960 Y12-6i02.p1k chr04 17 1082 997510 998570 F 1066 97.37 1154 accept 0 ALIGNMENT 920 Y12-6i03.p1k chr12 12 1091 1048827 1049895 F 1080 96.85 1252 accept 0 ALIGNMENT 1023 Y12-6i03.q1k chr12 1275 36 1053623 1054868 C 1240 95.73 1298 accept 0 ALIGNMENT 1041 Y12-6i04.q1k chr16 28 1277 538459 539712 F 1250 95.52 1369 accept 0 ALIGNMENT 962 Y12-6i04.p1k chr16 1149 20 542964 544095 C 1130 96.46 1210 accept 0 ALIGNMENT 937 Y12-6i05.p1k chr02 23 1155 464705 465867 F 1133 94.44 1244 accept 0 ALIGNMENT 981 Y12-6i05.q1k chr02 1140 35 468726 469843 C 1106 97.20 1322 accept 0 ALIGNMENT 952 Y12-6i07.p1k chr02 14 1095 712894 713979 F 1082 96.86 1306 accept 0 ALIGNMENT 1018 Y12-6i07.q1k chr02 1277 36 716074 717330 C 1242 95.01 1322 accept 0 ALIGNMENT 935 Y12-6i08.q1k chr13 1078 28 285504 286564 C 1051 97.91 1323 accept 0 ALIGNMENT 905 Y12-6i08.p1k chr13 23 1076 282566 283611 F 1054 96.30 1311 accept 0 ALIGNMENT 893 Y12-6i09.p1k chr09 16 1106 143485 144581 F 1091 95.42 1324 accept 0 ALIGNMENT 992 Y12-6i09.q1k chr09 1207 28 148452 149648 C 1180 95.59 1296 accept 0 ALIGNMENT 720 Y12-6i10.p1k chr15 6 892 525056 525934 F 887 95.15 1372 accept 0 ALIGNMENT 1017 Y12-6i10.q1k chr15 1197 31 528224 529395 C 1167 96.66 1360 accept 0 ALIGNMENT 0 Y12-6i11.p1k chr03 837 62 143078 143077 C 776 0.00 1399 reject_low 36 ALIGNMENT 90 Y12-6i11.p1k chr15 837 1070 117701 117937 F 234 82.91 1399 reject_low 13 ALIGNMENT 0 Y12-6i11.p1k chr05 764 62 498506 498505 C 703 0.00 1399 reject_low 4 ALIGNMENT 0 Y12-6i11.p1k chr03 665 62 127796 127795 C 604 0.00 1399 reject_low 43 ALIGNMENT 108 Y12-6i11.p1k chr06 1070 838 161900 162129 C 233 84.98 1399 reject_low 35 ALIGNMENT 0 Y12-6i11.p1k chr15 665 62 228411 228410 C 604 0.00 1399 reject_low 26 ALIGNMENT 822 Y12-6i11.q1k chr02 1130 34 263476 264567 C 1097 93.44 1345 reject_low 6 ALIGNMENT 0 Y12-6i11.p1k chr03 62 837 151518 151517 F 776 0.00 1399 reject_low 34 ALIGNMENT 751 Y12-6i11.q1k chr13 1208 34 200158 201325 C 1175 90.04 1345 reject_low 22 ALIGNMENT 0 Y12-6i11.p1k chr02 62 837 259576 259575 F 776 0.00 1399 reject_low 6 ALIGNMENT 0 Y12-6i11.p1k chr06 749 840 137555 137657 F 92 0.00 1399 reject_low 44 ALIGNMENT 0 Y12-6i11.p1k chr05 837 62 492829 492828 C 776 0.00 1399 reject_low 40 ALIGNMENT 88 Y12-6i11.p1k chr16 1070 838 856315 856550 C 233 82.83 1399 reject_low 12 ALIGNMENT 119 Y12-6i11.p1k chr13 1081 838 357094 357335 C 244 85.66 1399 reject_low 31 ALIGNMENT 718 Y12-6i11.q1k chr16 34 1208 805568 806735 F 1175 89.11 1345 reject_low 3 ALIGNMENT 930 Y12-6i11.q1k chr02 1130 34 224939 226030 C 1097 96.72 1345 reject_low 8 ALIGNMENT 70 Y12-6i11.p1k chr14 765 837 546739 546811 F 73 100.00 1399 reject_low 29 ALIGNMENT 829 Y12-6i11.q1k chr15 1208 34 598642 599809 C 1175 92.17 1345 reject_low 11 ALIGNMENT 0 Y12-6i11.p1k chr16 62 837 849999 849998 F 776 0.00 1399 reject_low 37 ALIGNMENT 0 Y12-6i11.p1k chr16 661 62 810757 810756 C 600 0.00 1399 reject_low 3 ALIGNMENT 82 Y12-6i11.p1k chr15 752 666 228325 228410 C 87 98.85 1399 reject_low 26 ALIGNMENT 75 Y12-6i11.p1k chr01 722 837 182572 182686 F 116 89.66 1399 reject_low 42 ALIGNMENT 88 Y12-6i11.p1k chr16 1070 838 850727 850962 C 233 82.83 1399 reject_low 39 ALIGNMENT 931 Y12-6i11.q1k chr13 34 1208 357929 359096 F 1175 95.06 1345 reject_low 1 ALIGNMENT 747 Y12-6i11.q1k chr15 1130 34 121605 122696 C 1097 91.25 1345 reject_low 13 ALIGNMENT 89 Y12-6i11.p1k chr13 1070 837 378386 378622 C 234 82.91 1399 reject_low 10 ALIGNMENT 726 Y12-6i11.q1k chr10 1130 34 476280 477371 C 1097 90.61 1345 reject_low 24 ALIGNMENT 0 Y12-6i11.p1k chr11 842 765 74614 74613 C 78 0.00 1399 accept 0 ALIGNMENT 70 Y12-6i11.p1k chr09 765 837 205217 205289 F 73 100.00 1399 reject_low 28 ALIGNMENT 0 Y12-6i11.p1k chr16 62 832 844403 844402 F 771 0.00 1399 reject_low 9 ALIGNMENT 751 Y12-6i11.q1k chr05 34 1208 444323 445490 F 1175 90.04 1345 reject_low 21 ALIGNMENT 846 Y12-6i11.q1k chr04 1130 34 1210593 1211684 C 1097 94.17 1345 reject_low 15 ALIGNMENT 34 Y12-6i11.p1k chr03 949 838 168818 168928 C 112 79.46 1399 reject_low 41 ALIGNMENT 846 Y12-6i11.q1k chr04 34 1130 987646 988737 F 1097 94.17 1345 reject_low 14 ALIGNMENT 763 Y12-6i11.q1k chr16 1208 34 848238 849405 C 1175 90.38 1345 reject_low 9 ALIGNMENT 699 Y12-6i11.p1k chr11 764 20 74613 75352 C 745 99.19 1399 accept 0 ALIGNMENT 90 Y12-6i11.p1k chr05 943 838 492723 492828 C 106 96.23 1399 reject_low 40 ALIGNMENT 89 Y12-6i11.p1k chr03 838 1070 169202 169437 F 233 82.83 1399 reject_low 45 ALIGNMENT 88 Y12-6i11.p1k chr13 1070 838 372798 373033 C 233 82.83 1399 reject_low 38 ALIGNMENT 846 Y12-6i11.q1k chr12 1130 34 654727 655818 C 1097 94.17 1345 reject_low 16 ALIGNMENT 118 Y12-6i11.p1k chr07 838 1081 535215 535456 F 244 85.66 1399 reject_low 2 ALIGNMENT 110 Y12-6i11.p1k chr03 1070 838 124233 124462 C 233 85.41 1399 reject_low 43 ALIGNMENT 804 Y12-6i11.q1k chr13 34 1130 373627 374718 F 1097 92.98 1345 reject_low 10 ALIGNMENT 77 Y12-6i11.p1k chr03 748 666 127713 127795 C 83 97.59 1399 reject_low 43 ALIGNMENT 75 Y12-6i11.p1k chr16 748 662 810672 810756 C 87 96.55 1399 reject_low 3 ALIGNMENT 763 Y12-6i11.q1k chr04 1198 34 1099599 1100756 C 1165 90.56 1345 reject_low 20 ALIGNMENT 763 Y12-6i11.q1k chr13 1208 34 187991 189158 C 1175 90.38 1345 reject_low 19 ALIGNMENT 0 Y12-6i11.p1k chr14 62 764 546739 546738 F 703 0.00 1399 reject_low 29 ALIGNMENT 111 Y12-6i11.p1k chr03 838 1070 151518 151746 F 233 85.84 1399 reject_low 34 ALIGNMENT 0 Y12-6i11.p1k chr03 837 62 168929 168928 C 776 0.00 1399 reject_low 41 ALIGNMENT 0 Y12-6i11.p1k chr13 837 62 362918 362917 C 776 0.00 1399 reject_low 1 ALIGNMENT 0 Y12-6i11.p1k chr13 837 62 357336 357335 C 776 0.00 1399 reject_low 31 ALIGNMENT 119 Y12-6i11.p1k chr02 838 1070 259576 259805 F 233 86.70 1399 reject_low 6 ALIGNMENT 922 Y12-6i11.q1k chr07 1208 34 539591 540758 C 1175 94.81 1345 reject_low 2 ALIGNMENT 0 Y12-6i11.p1k chr03 62 766 168386 168385 F 705 0.00 1399 reject_low 45 ALIGNMENT 0 Y12-6i11.p1k chr15 62 836 117701 117700 F 775 0.00 1399 reject_low 13 ALIGNMENT 0 Y12-6i11.p1k chr09 62 764 205217 205216 F 703 0.00 1399 reject_low 28 ALIGNMENT 0 Y12-6i11.p1k chr16 62 774 856551 856550 F 713 0.00 1399 reject_low 32 ALIGNMENT 0 Y12-6i11.p1k chr01 62 721 182572 182571 F 660 0.00 1399 reject_low 42 ALIGNMENT 724 Y12-6i11.q1k chr16 34 1208 851556 852723 F 1175 89.28 1345 reject_low 12 ALIGNMENT 0 Y12-6i11.p1k chr13 836 62 378623 378622 C 775 0.00 1399 reject_low 10 ALIGNMENT 0 Y12-6i11.p1k chr13 837 62 373034 373033 C 776 0.00 1399 reject_low 38 ALIGNMENT 0 Y12-6i11.p1k chr07 62 764 707199 707198 F 703 0.00 1399 reject_low 27 ALIGNMENT 70 Y12-6i11.p1k chr07 765 837 707199 707271 F 73 100.00 1399 reject_low 27 ALIGNMENT 96 Y12-6i11.p1k chr03 1070 838 142848 143077 C 233 83.26 1399 reject_low 36 ALIGNMENT 91 Y12-6i11.p1k chr16 833 1070 844403 844643 F 238 82.77 1399 reject_low 9 ALIGNMENT 0 Y12-6i11.p1k chr07 62 837 535215 535214 F 776 0.00 1399 reject_low 2 ALIGNMENT 119 Y12-6i11.p1k chr13 1081 838 362676 362917 C 244 85.66 1399 reject_low 1 ALIGNMENT 75 Y12-6i11.p1k chr06 668 748 137474 137554 F 81 97.53 1399 reject_low 44 ALIGNMENT 0 Y12-6i11.p1k chr06 62 667 137474 137473 F 606 0.00 1399 reject_low 44 ALIGNMENT 0 Y12-6i11.p1k chr15 842 752 487438 487437 C 91 0.00 1399 reject_low 25 ALIGNMENT 0 Y12-6i11.p1k chr01 838 837 182687 183135 F 0 0.00 1399 reject_low 42 ALIGNMENT 0 Y12-6i11.p1k chr06 837 62 162130 162129 C 776 0.00 1399 reject_low 35 ALIGNMENT 913 Y12-6i11.q1k chr10 1208 34 481788 482955 C 1175 94.55 1345 reject_low 5 ALIGNMENT 64 Y12-6i11.p1k chr06 841 1014 137658 137823 F 174 83.33 1399 reject_low 44 ALIGNMENT 98 Y12-6i11.p1k chr05 1070 765 498181 498505 C 306 80.39 1399 reject_low 4 ALIGNMENT 0 Y12-6i11.p1k chr16 837 62 856551 856550 C 776 0.00 1399 reject_low 12 ALIGNMENT 89 Y12-6i11.p1k chr16 838 1070 849999 850234 F 233 82.83 1399 reject_low 37 ALIGNMENT 118 Y12-6i11.p1k chr16 837 1070 560477 560707 F 234 86.32 1399 reject_low 33 ALIGNMENT 0 Y12-6i11.p1k chr16 837 62 850963 850962 C 776 0.00 1399 reject_low 39 ALIGNMENT 0 Y12-6i11.p1k chr07 762 62 319768 319767 C 701 0.00 1399 reject_low 30 ALIGNMENT 0 Y12-6i11.p1k chr16 62 836 560477 560476 F 775 0.00 1399 reject_low 33 ALIGNMENT 0 Y12-6i11.p1k chr03 837 749 124463 127712 C 89 0.00 1399 reject_low 43 ALIGNMENT 0 Y12-6i11.p1k chr03 838 837 168457 169201 F 0 0.00 1399 reject_low 45 ALIGNMENT 895 Y12-6i11.q1k chr14 34 1208 97535 98702 F 1175 94.04 1345 reject_low 7 ALIGNMENT 0 Y12-6i11.p1k chr15 657 62 487531 487530 C 596 0.00 1399 reject_low 25 ALIGNMENT 0 Y12-6i11.p1k chr16 842 749 810673 810672 C 94 0.00 1399 reject_low 3 ALIGNMENT 802 Y12-6i11.q1k chr12 34 1208 216012 217179 F 1175 91.49 1345 reject_low 17 ALIGNMENT 66 Y12-6i11.p1k chr07 837 763 319693 319767 C 75 97.33 1399 reject_low 30 ALIGNMENT 56 Y12-6i11.p1k chr16 775 837 856551 856613 F 63 98.41 1399 reject_low 32 ALIGNMENT 0 Y12-6i11.p1k chr15 842 753 228326 228325 C 90 0.00 1399 reject_low 26 ALIGNMENT 807 Y12-6i11.q1k chr05 34 1130 493422 494513 F 1097 93.07 1345 reject_low 4 ALIGNMENT 81 Y12-6i11.p1k chr15 751 658 487437 487530 C 94 95.74 1399 reject_low 25 ALIGNMENT 87 Y12-6i11.p1k chr01 837 1070 183135 183365 F 234 82.05 1399|1,0 reject_low 42 ALIGNMENT 747 Y12-6i11.q1k chr16 1130 34 60354 61445 C 1097 91.25 1345 reject_low 23 ALIGNMENT 59 Y12-6i11.p1k chr03 767 837 168386 168456 F 71 95.77 1399 reject_low 45 ALIGNMENT 810 Y12-6i11.q1k chr07 34 1130 818323 819414 F 1097 93.07 1345 reject_low 18 ALIGNMENT 961 Y12-6i12.p1k chr07 23 1113 795991 797095 F 1091 97.71 1389 accept 0 ALIGNMENT 1012 Y12-6i12.q1k chr07 1201 35 799307 800484 C 1167 96.32 1377 accept 0 ALIGNMENT 44 Y12-6i13.q1k chr14 112 48 783226 783290 C 65 90.77 1268 reject_low 12 ALIGNMENT 0 Y12-6i13.q1k chr16 113 882 7275 7274 F 770 0.00 1268 reject_low 10 ALIGNMENT 548 Y12-6i13.q1k chr13 41 1034 6325 7327 F 994 86.92 1268 reject_low 6 ALIGNMENT 727 Y12-6i13.q1k chr06 39 1034 5509 6509 F 996 92.17 1268 reject_low 2 ALIGNMENT 0 Y12-6i13.q1k chr14 882 113 783227 783226 C 770 0.00 1268 reject_low 12 ALIGNMENT 606 Y12-6i13.q1k chr09 1119 48 438000 439077 C 1072 87.31 1268 reject_low 1 ALIGNMENT 559 Y12-6i13.q1k chr14 41 1034 7409 8413 F 994 87.22 1268 reject_low 5 ALIGNMENT 523 Y12-6i13.q1k chr07 1034 39 1082652 1083662 C 996 85.54 1268 reject_low 8 ALIGNMENT 53 Y12-6i13.q1k chr16 32 112 7195 7275 F 81 90.12 1268 reject_low 10 ALIGNMENT 564 Y12-6i13.q1k chr10 1034 41 743831 744836 C 994 87.32 1268 reject_low 4 ALIGNMENT 0 Y12-6i13.q1k chr12 113 882 12137 12136 F 770 0.00 1268 reject_low 11 ALIGNMENT 0 Y12-6i13.q1k chr05 379 882 6791 6790 F 504 0.00 1268 reject_low 9 ALIGNMENT 44 Y12-6i13.q1k chr12 48 112 12073 12137 F 65 90.77 1268 reject_low 11 ALIGNMENT 962 Y12-6i13.p1k chr08 1201 29 10123 11313 C 1173 95.48 1267 accept 0 ALIGNMENT 577 Y12-6i13.q1k chr04 41 1034 885 1885 F 994 87.73 1268 reject_low 3 ALIGNMENT 253 Y12-6i13.q1k chr05 48 378 6461 6791 F 331 93.66 1268 reject_low 9 ALIGNMENT 547 Y12-6i13.q1k chr02 1034 41 811390 812392 C 994 86.92 1268 reject_low 7 ALIGNMENT 559 Y12-6i13.q1k chr08 41 1119 5485 6576 F 1079 85.73 1268 accept 0 ALIGNMENT 0 Y12-6i14.q1k chr04 62 254 1059912 1059911 F 193 0.00 1262 accept 0 ALIGNMENT 879 Y12-6i14.p1k chr04 1008 11 1063056 1064040 C 998 97.49 1370 accept 0 ALIGNMENT 0 Y12-6i14.q1k chr04 266 781 1059958 1059957 F 516 0.00 1262 reject_low 1 ALIGNMENT 659 Y12-6i14.q1k chr04 255 1021 1059912 1060683 F 767 97.13 1262 accept 0 ALIGNMENT 220 Y12-6i14.q1k chr04 10 265 1059703 1059958 F 256 98.44 1262 reject_low 1 ALIGNMENT 929 Y12-6i15.p1k chr08 20 1165 334035 335193 F 1146 94.76 1257 accept 0 ALIGNMENT 1040 Y12-6i15.q1k chr08 1247 37 337378 338586 C 1211 96.53 1312 accept 0 ALIGNMENT 119 Y12-6i16.q1k chr12 587 705 485696 485814 F 119 100.00 1321 reject_low 7 ALIGNMENT 0 Y12-6i16.q1k chr12 62 586 482044 482043 F 525 0.00 1321 reject_low 6 ALIGNMENT 0 Y12-6i16.q1k chr12 721 877 489481 489480 F 157 0.00 1321 reject_low 3 ALIGNMENT 0 Y12-6i16.q1k chr12 62 586 485696 485695 F 525 0.00 1321 reject_low 7 ALIGNMENT 0 Y12-6i16.q1k chr06 877 328 31623 31622 C 550 0.00 1321 reject_low 4 ALIGNMENT 0 Y12-6i16.q1k chr12 706 877 468930 468929 F 172 0.00 1321 reject_low 2 ALIGNMENT 0 Y12-6i16.q1k chr12 706 877 482162 482161 F 172 0.00 1321 reject_low 6 ALIGNMENT 94 Y12-6i16.q1k chr06 327 220 31622 31729 C 108 98.15 1321 reject_low 4 ALIGNMENT 119 Y12-6i16.q1k chr12 587 705 482044 482162 F 119 100.00 1321 reject_low 6 ALIGNMENT 0 Y12-6i16.q1k chr12 706 877 485814 485813 F 172 0.00 1321 reject_low 7 ALIGNMENT 0 Y12-6i16.q1k chr06 219 62 31730 31729 C 158 0.00 1321 reject_low 4 ALIGNMENT 119 Y12-6i16.q1k chr12 587 705 472464 472582 F 119 100.00 1321 reject_low 5 ALIGNMENT 0 Y12-6i16.q1k chr12 62 586 489348 489347 F 525 0.00 1321 reject_low 3 ALIGNMENT 0 Y12-6i16.q1k chr12 706 877 472582 472581 F 172 0.00 1321 reject_low 5 ALIGNMENT 649 Y12-6i16.q1k chr12 27 705 468251 468930 F 679 99.71 1321 reject_low 2 ALIGNMENT 882 Y12-6i16.q1k chr12 27 1088 459114 460200 F 1062 95.57 1321 accept 0 ALIGNMENT 128 Y12-6i16.q1k chr12 587 720 489348 489481 F 134 98.51 1321 reject_low 3 ALIGNMENT 955 Y12-6i16.p1k chr12 1112 17 462378 463480 C 1096 96.17 1267 accept 0 ALIGNMENT 0 Y12-6i16.q1k chr12 62 586 472464 472463 F 525 0.00 1321 reject_low 5 ALIGNMENT 967 Y12-6i16.p1k chr12 1182 17 453172 454343 C 1166 94.85 1267 reject_low 1 ALIGNMENT 847 Y12-6i17.p1k chr07 9 918 478020 478932 F 910 98.57 1276 accept 0 ALIGNMENT 1002 Y12-6i17.q1k chr07 1146 35 481210 482319 C 1112 97.48 1281 accept 0 ALIGNMENT 392 Y12-6i17.q1k chr16 35 963 483280 484208 F 929 81.38 1281 reject_low 1 ALIGNMENT 1063 Y12-6i18.q1k chr04 1207 30 63974 65154 C 1178 97.54 1327 accept 0 ALIGNMENT 939 Y12-6i18.p1k chr04 17 1079 61131 62183 F 1063 97.08 1296 accept 0 ALIGNMENT 860 Y12-6i19.q1k chr07 1173 29 468595 469767 C 1145 93.36 1282 accept 0 ALIGNMENT 640 Y12-6i19.p1k chr07 266 1154 465731 466611 F 889 92.01 1285 accept 0 ALIGNMENT 835 Y12-6i20.p1k chr09 22 1011 357246 358220 F 990 97.07 1313 accept 0 ALIGNMENT 1043 Y12-6i20.q1k chr09 1272 28 359715 360963 C 1245 95.50 1350 accept 0 ALIGNMENT 941 Y12-6i21.p1k chr04 44 1143 1188317 1189408 F 1100 96.64 1196 accept 0 ALIGNMENT 1029 Y12-6i21.q1k chr04 1225 34 1191246 1192435 C 1192 96.39 1257 accept 0 ALIGNMENT 702 Y12-6i22.p1k chr04 243 1128 122037 122937 F 886 94.70 1182 accept 0 ALIGNMENT 959 Y12-6i23.q1k chr04 37 1249 1388980 1390193 F 1213 94.72 1266 accept 0 ALIGNMENT 944 Y12-6i24.q1k chr16 35 1259 881925 883164 F 1225 93.71 1270 accept 0 ALIGNMENT 979 Y12-6j01.q1k chr12 1216 28 457536 458718 C 1189 95.46 1360 reject_low 2 ALIGNMENT 936 Y12-6j01.p1k chr12 18 1016 464774 465764 F 999 98.50 1216 accept 1 ALIGNMENT 989 Y12-6j01.q1k chr12 1332 28 466561 467855 C 1305 93.56 1360 accept 0,1 ALIGNMENT 936 Y12-6j01.p1k chr12 18 1016 455637 456627 F 999 98.50 1216 accept 0 ALIGNMENT 829 Y12-6j03.p1k chr06 970 12 120837 121786 C 959 97.71 1298 accept 0 ALIGNMENT 0 Y12-6j03.q1k chr05 492 858 290542 290541 F 367 0.00 1351 reject_low 1 ALIGNMENT 985 Y12-6j03.q1k chr06 30 1294 117657 118933 F 1265 94.23 1351 accept 0 ALIGNMENT 376 Y12-6j03.q1k chr05 30 491 290081 290542 F 462 94.37 1351 reject_low 1 ALIGNMENT 837 Y12-6j04.p1k chr04 14 986 837275 838241 F 973 96.30 1238 accept 0 ALIGNMENT 973 Y12-6j04.q1k chr04 1184 32 841713 842865 C 1153 95.49 1344 accept 0 ALIGNMENT 30 Y12-6j05.q1k chr13 720 759 209871 209910 F 40 95.00 1368 reject_low 14 ALIGNMENT 0 Y12-6j05.q1k chr08 661 62 252961 252960 C 600 0.00 1368 reject_low 4 ALIGNMENT 0 Y12-6j05.q1k chr06 714 62 202501 202500 C 653 0.00 1368 reject_low 22 ALIGNMENT 0 Y12-6j05.q1k chr15 700 715 227322 227295 F 16 0.00 1368 reject_low 23 ALIGNMENT 0 Y12-6j05.p1k chr10 311 125 120777 120776 C 187 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-6j05.q1k chr13 748 866 354219 354218 F 119 0.00 1368 reject_low 16 ALIGNMENT 0 Y12-6j05.q1k chr12 866 766 375340 375339 C 101 0.00 1368 reject_low 17 ALIGNMENT 50 Y12-6j05.q1k chr08 759 662 252863 252960 C 98 85.71 1368 reject_low 4 ALIGNMENT 22 Y12-6j05.q1k chr16 673 698 723999 724024 F 26 96.15 1368 reject_low 24 ALIGNMENT 0 Y12-6j05.q1k chr15 651 62 63095 63094 C 590 0.00 1368 reject_low 7 ALIGNMENT 0 Y12-6j05.q1k chr06 685 62 224614 224613 C 624 0.00 1368 reject_low 18 ALIGNMENT 24 Y12-6j05.q1k chr15 666 699 227288 227321 F 34 91.18 1368 reject_low 23 ALIGNMENT 0 Y12-6j05.q1k chr15 866 761 63056 63055 C 106 0.00 1368 reject_low 15 ALIGNMENT 0 Y12-6j05.q1k chr08 712 62 252979 252978 C 651 0.00 1368 reject_low 5 ALIGNMENT 29 Y12-6j05.q1k chr15 760 720 63055 63095 C 41 92.68 1368 reject_low 15 ALIGNMENT 0 Y12-6j05.q1k chr13 62 687 354160 354159 F 626 0.00 1368 reject_low 16 ALIGNMENT 22 Y12-6j05.q1k chr15 690 652 63056 63094 C 39 87.18 1368 reject_low 7 ALIGNMENT 0 Y12-6j05.q1k chr06 866 745 224556 224555 C 122 0.00 1368 reject_low 18 ALIGNMENT 0 Y12-6j05.q1k chr12 866 757 252901 252900 C 110 0.00 1368 reject_low 13 ALIGNMENT 0 Y12-6j05.q1k chr16 699 709 724025 723999 F 11 0.00 1368 reject_low 24 ALIGNMENT 0 Y12-6j05.q1k chr06 866 744 202473 202472 C 123 0.00 1368 reject_low 22 ALIGNMENT 0 Y12-6j05.q1k chr12 690 62 375414 375413 C 629 0.00 1368 reject_low 17 ALIGNMENT 0 Y12-6j05.q1k chr04 703 62 810773 810772 C 642 0.00 1368 reject_low 9 ALIGNMENT 0 Y12-6j05.q1k chr11 748 866 386821 386820 F 119 0.00 1368 reject_low 21 ALIGNMENT 31 Y12-6j05.q1k chr15 716 753 227296 227333 F 38 97.37 1368 reject_low 23 ALIGNMENT 28 Y12-6j05.q1k chr06 744 686 224555 224613 C 59 84.75 1368 reject_low 18 ALIGNMENT 0 Y12-6j05.q1k chr08 866 760 252864 252863 C 107 0.00 1368 reject_low 4 ALIGNMENT 39 Y12-6j05.q1k chr08 768 668 252884 252984 C 101 81.19 1368 reject_low 6 ALIGNMENT 66 Y12-6j05.q1k chr15 768 622 427907 428053 C 147 83.67 1368 reject_low 1 ALIGNMENT 0 Y12-6j05.q1k chr06 866 712 224559 224558 C 155 0.00 1368 reject_low 12 ALIGNMENT 0 Y12-6j05.q1k chr16 735 866 724024 724023 F 132 0.00 1368 reject_low 24 ALIGNMENT 28 Y12-6j05.p1k chr10 354 312 120734 120776 C 43 88.37 1297 reject_low 2 ALIGNMENT 0 Y12-6j05.q1k chr13 62 694 248118 248117 F 633 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-6j05.p1k chr10 315 125 120896 120895 C 191 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-6j05.q1k chr08 866 773 252920 252919 C 94 0.00 1368 reject_low 5 ALIGNMENT 0 Y12-6j05.q1k chr13 701 866 209905 209904 F 166 0.00 1368 reject_low 19 ALIGNMENT 35 Y12-6j05.q1k chr13 695 753 248118 248176 F 59 88.14 1368 reject_low 11 ALIGNMENT 0 Y12-6j05.q1k chr15 866 769 427908 427907 C 98 0.00 1368 reject_low 1 ALIGNMENT 21 Y12-6j05.q1k chr06 743 715 202472 202500 C 29 93.10 1368 reject_low 22 ALIGNMENT 0 Y12-6j05.q1k chr11 62 718 386793 386792 F 657 0.00 1368 reject_low 21 ALIGNMENT 35 Y12-6j05.q1k chr04 756 704 810720 810772 C 53 90.57 1368 reject_low 9 ALIGNMENT 0 Y12-6j05.p1k chr10 636 355 120735 120734 C 282 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-6j05.q1k chr12 866 721 252901 252900 C 146 0.00 1368 reject_low 8 ALIGNMENT 0 Y12-6j05.q1k chr08 667 62 252985 252984 C 606 0.00 1368 reject_low 6 ALIGNMENT 26 Y12-6j05.q1k chr12 720 652 252900 252968 C 69 81.16 1368 reject_low 8 ALIGNMENT 0 Y12-6j05.q1k chr13 760 866 209910 209909 F 107 0.00 1368 reject_low 14 ALIGNMENT 30 Y12-6j05.q1k chr13 665 705 248127 248167 F 41 92.68 1368 reject_low 10 ALIGNMENT 26 Y12-6j05.q1k chr12 765 691 375339 375413 C 75 80.00 1368 reject_low 17 ALIGNMENT 22 Y12-6j05.q1k chr04 699 668 810738 810769 C 32 90.62 1368 reject_low 20 ALIGNMENT 33 Y12-6j05.q1k chr12 756 687 252900 252969 C 70 84.29 1368 reject_low 13 ALIGNMENT 0 Y12-6j05.p1k chr10 636 347 120866 120865 C 290 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-6j05.q1k chr15 866 691 63057 63056 C 176 0.00 1368 reject_low 7 ALIGNMENT 978 Y12-6j05.q1k chr08 1182 26 364941 366101 C 1157 96.37 1368 accept 0 ALIGNMENT 0 Y12-6j05.q1k chr15 754 866 227333 227332 F 113 0.00 1368 reject_low 23 ALIGNMENT 0 Y12-6j05.q1k chr12 651 62 252969 252968 C 590 0.00 1368 reject_low 8 ALIGNMENT 0 Y12-6j05.q1k chr13 62 664 248127 248126 F 603 0.00 1368 reject_low 10 ALIGNMENT 0 Y12-6j05.q1k chr06 667 62 224602 224601 C 606 0.00 1368 reject_low 12 ALIGNMENT 0 Y12-6j05.q1k chr15 719 62 63096 63095 C 658 0.00 1368 reject_low 15 ALIGNMENT 0 Y12-6j05.q1k chr15 621 62 428054 428053 C 560 0.00 1368 reject_low 1 ALIGNMENT 0 Y12-6j05.q1k chr13 706 866 248167 248166 F 161 0.00 1368 reject_low 10 ALIGNMENT 32 Y12-6j05.q1k chr13 688 747 354160 354219 F 60 86.67 1368 reject_low 16 ALIGNMENT 32 Y12-6j05.q1k chr08 772 713 252919 252978 C 60 86.67 1368 reject_low 5 ALIGNMENT 0 Y12-6j05.q1k chr12 686 62 252970 252969 C 625 0.00 1368 reject_low 13 ALIGNMENT 0 Y12-6j05.q1k chr15 62 665 227288 227287 F 604 0.00 1368 reject_low 23 ALIGNMENT 0 Y12-6j05.q1k chr08 866 769 252885 252884 C 98 0.00 1368 reject_low 6 ALIGNMENT 24 Y12-6j05.q1k chr16 710 734 724000 724024 F 25 100.00 1368 reject_low 24 ALIGNMENT 25 Y12-6j05.p1k chr10 346 316 120865 120895 C 31 93.55 1297 reject_low 3 ALIGNMENT 23 Y12-6j05.q1k chr11 719 747 386793 386821 F 29 100.00 1368 reject_low 21 ALIGNMENT 0 Y12-6j05.q1k chr04 667 62 810770 810769 C 606 0.00 1368 reject_low 20 ALIGNMENT 0 Y12-6j05.q1k chr13 754 866 248176 248175 F 113 0.00 1368 reject_low 11 ALIGNMENT 0 Y12-6j05.q1k chr13 62 719 209871 209870 F 658 0.00 1368 reject_low 14 ALIGNMENT 0 Y12-6j05.q1k chr13 62 665 209871 209870 F 604 0.00 1368 reject_low 19 ALIGNMENT 743 Y12-6j05.p1k chr08 22 973 359554 360500 F 952 93.80 1297 accept 0 ALIGNMENT 0 Y12-6j05.q1k chr16 62 672 723999 723998 F 611 0.00 1368 reject_low 24 ALIGNMENT 0 Y12-6j05.q1k chr04 866 700 810739 810738 C 167 0.00 1368 reject_low 20 ALIGNMENT 0 Y12-6j05.q1k chr04 866 757 810721 810720 C 110 0.00 1368 reject_low 9 ALIGNMENT 30 Y12-6j05.q1k chr06 711 668 224558 224601 C 44 90.91 1368 reject_low 12 ALIGNMENT 22 Y12-6j05.q1k chr13 666 700 209871 209905 F 35 88.57 1368 reject_low 19 ALIGNMENT 272 Y12-6j06.p1k chr16 18 858 778919 779756 F 841 78.00 1312 reject_low 2 ALIGNMENT 399 Y12-6j06.p1k chr15 818 18 225000 225799 C 801 83.65 1312 reject_low 1 ALIGNMENT 0 Y12-6j06.p1k chr16 859 886 779756 779755 F 28 0.00 1312 reject_low 2 ALIGNMENT 0 Y12-6j06.p1k chr15 886 819 225001 225000 C 68 0.00 1312 reject_low 1 ALIGNMENT 985 Y12-6j06.p1k chr16 1137 18 53774 54879 C 1120 97.05 1312 accept 0 ALIGNMENT 0 Y12-6j08.q1k chrm 551 81 73012 73011 C 471 0.00 1441 reject_low 13 ALIGNMENT 39 Y12-6j08.q1k chrm 81 34 34286 34333 C 48 95.83 1441 reject_low 12 ALIGNMENT 39 Y12-6j08.q1k chrm 81 34 11505 11552 C 48 95.83 1441 reject_low 11 ALIGNMENT 0 Y12-6j08.q1k chrm 551 82 84488 84487 C 470 0.00 1441 reject_low 5 ALIGNMENT 0 Y12-6j08.q1k chrm 551 90 50101 50100 C 462 0.00 1441 reject_low 4 ALIGNMENT 0 Y12-6j08.q1k chrm 551 82 34287 34286 C 470 0.00 1441 reject_low 12 ALIGNMENT 0 Y12-6j08.q1k chrm 551 91 29831 29830 C 461 0.00 1441 reject_low 6 ALIGNMENT 46 Y12-6j08.q1k chrm 90 35 29830 29886 C 56 94.64 1441 reject_low 6 ALIGNMENT 33 Y12-6j08.q1k chrm 81 39 46314 46356 C 43 95.35 1441 reject_low 15 ALIGNMENT 0 Y12-6j08.q1k chrm 551 233 77519 77518 C 319 0.00 1441 reject_low 2 ALIGNMENT 34 Y12-6j08.q1k chrm 80 28 73011 73062 C 53 90.57 1441 reject_low 13 ALIGNMENT 478 Y12-6j08.q1k chr07 253 943 750455 751130 F 691 92.33 1441 accept_chi 0 ALIGNMENT 44 Y12-6j08.q1k chrm 89 28 50100 50162 C 62 91.94 1441 reject_low 4 ALIGNMENT 42 Y12-6j08.q1k chrm 32 81 71207 71256 F 50 96.00 1441 reject_low 10 ALIGNMENT 42 Y12-6j08.q1k chrm 91 34 34922 34981 C 58 91.38 1441 reject_low 7 ALIGNMENT 35 Y12-6j08.q1k chrm 81 37 83053 83097 C 45 95.56 1441 reject_low 14 ALIGNMENT 154 Y12-6j08.q1k chrm 232 28 77518 77724 C 205 97.07 1441 reject_low 2 ALIGNMENT 0 Y12-6j08.q1k chrm 82 551 12311 12310 F 470 0.00 1441 reject_low 8 ALIGNMENT 0 Y12-6j08.q1k chrm 551 92 76585 76584 C 460 0.00 1441 reject_low 3 ALIGNMENT 0 Y12-6j08.q1k chrm 551 82 46315 46314 C 470 0.00 1441 reject_low 15 ALIGNMENT 0 Y12-6j08.q1k chrm 551 82 11506 11505 C 470 0.00 1441 reject_low 11 ALIGNMENT 0 Y12-6j08.q1k chrm 551 90 48094 48093 C 462 0.00 1441 reject_low 9 ALIGNMENT 445 Y12-6j08.p1k chr06 83 777 163943 164628 F 695 89.78 1427 accept_chi 1 ALIGNMENT 0 Y12-6j08.q1k chrm 551 82 83054 83053 C 470 0.00 1441 reject_low 14 ALIGNMENT 0 Y12-6j08.q1k chrm 82 551 71256 71255 F 470 0.00 1441 reject_low 10 ALIGNMENT 38 Y12-6j08.q1k chrm 89 39 48093 48143 C 51 92.16 1441 reject_low 9 ALIGNMENT 0 Y12-6j08.q1k chr07 62 252 750455 750454 F 191 0.00 1441 accept_chi 0 ALIGNMENT 47 Y12-6j08.q1k chrm 30 81 12260 12311 F 52 98.08 1441 reject_low 8 ALIGNMENT 46 Y12-6j08.q1k chrm 91 28 76584 76647 C 64 90.62 1441 reject_low 3 ALIGNMENT 32 Y12-6j08.q1k chrm 37 78 83 124 F 42 95.24 1441 reject_low 16 ALIGNMENT 0 Y12-6j08.q1k chrm 551 92 34923 34922 C 460 0.00 1441 reject_low 7 ALIGNMENT 0 Y12-6j08.q1k chrm 79 551 124 123 F 473 0.00 1441 reject_low 16 ALIGNMENT 49 Y12-6j08.q1k chrm 81 28 84487 84540 C 54 98.15 1441 reject_low 5 ALIGNMENT 851 Y12-6j11.p1k chr16 990 13 712854 713844 C 978 96.63 1349 accept 0 ALIGNMENT 977 Y12-6j11.q1k chr16 34 1114 709424 710520 F 1081 97.69 1342 accept 0 ALIGNMENT 907 Y12-6j13.q1k chr03 29 1169 201661 202779 F 1141 95.97 1381 accept 0 ALIGNMENT 653 Y12-6j13.p1k chr03 792 22 206687 207460 C 771 96.24 1492 accept 0 ALIGNMENT 803 Y12-6j14.p1k chr02 12 954 695250 696177 F 943 96.92 1320 accept 0 ALIGNMENT 1047 Y12-6j15.p1k chr05 30 1223 342866 344066 F 1194 96.90 1259 accept 0 ALIGNMENT 983 Y12-6j15.q1k chr05 1168 32 345690 346825 C 1137 96.83 1346 accept 0 ALIGNMENT 910 Y12-6j16.q1k chr12 32 1153 273382 274504 F 1122 95.01 1523 accept 0 ALIGNMENT 1079 Y12-6j16.p1k chr12 1265 20 278276 279518 C 1246 96.23 1271 accept 0 ALIGNMENT 841 Y12-6j18.p1k chr01 1023 23 48464 49460 C 1001 96.30 1216 accept 0 ALIGNMENT 786 Y12-6j19.p1k chr08 205 1132 443277 444203 F 928 95.80 1203 accept 0 ALIGNMENT 849 Y12-6j19.q1k chr08 1078 30 447464 448506 C 1049 95.52 1403 accept 0 ALIGNMENT 931 Y12-6j20.p1k chr11 30 1199 396737 397897 F 1170 94.70 1201 accept 0 ALIGNMENT 929 Y12-6j20.q1k chr11 1089 29 400303 401364 C 1061 96.80 1366 accept 0 ALIGNMENT 711 Y12-6j21.q1k chr08 90 907 489452 490262 F 818 96.45 1490 accept 0 ALIGNMENT 639 Y12-6j22.p1k chr04 24 825 418975 419775 F 802 94.26 1189 accept 0 ALIGNMENT 652 Y12-6j23.q1k chr11 1028 32 597445 598437 C 997 89.87 1259 accept 0 ALIGNMENT 933 Y12-6j24.q1k chr01 34 1092 38425 39478 F 1059 96.79 1284 accept 0 ALIGNMENT 901 Y12-6k01.q1k chr04 1030 29 612228 613229 C 1002 98.20 1311 accept 0 ALIGNMENT 457 Y12-6k01.p1k chr04 298 864 608570 609131 F 567 95.59 1451 accept 0 ALIGNMENT 451 Y12-6k02.q1k chr10 25 725 729057 729756 F 701 88.73 1393 reject_low 3 ALIGNMENT 456 Y12-6k02.q1k chr04 725 26 15959 16657 C 700 89.00 1393 reject_low 2 ALIGNMENT 618 Y12-6k02.p1k chr14 331 1081 11600 12339 F 751 95.34 1241 accept_tel 0 ALIGNMENT 615 Y12-6k02.p1k chr06 331 1081 9693 10432 F 751 95.21 1241 reject_low 1 ALIGNMENT 487 Y12-6k02.q1k chr14 799 26 14515 15285 C 774 88.24 1393 accept_tel 0 ALIGNMENT 472 Y12-6k02.q1k chr06 725 26 12685 13382 C 700 89.71 1393 reject_low 1 ALIGNMENT 361 Y12-6k03.q1k chr13 35 454 753330 753749 F 420 95.71 1311 reject_low 1 ALIGNMENT 770 Y12-6k03.p1k chr15 1243 217 904344 905361 C 1027 93.18 1259 accept 0 ALIGNMENT 1042 Y12-6k03.q1k chr15 35 1271 900351 901592 F 1237 95.96 1311 accept 0 ALIGNMENT 0 Y12-6k03.q1k chr13 455 885 753749 753748 F 431 0.00 1311 reject_low 1 ALIGNMENT 967 Y12-6k04.q1k chr04 29 1149 1217521 1218654 F 1121 96.61 1324 accept 0 ALIGNMENT 955 Y12-6k04.p1k chr04 1233 25 1221937 1223161 C 1209 94.95 1239 accept 0 ALIGNMENT 1079 Y12-6k05.q1k chr12 1278 31 716656 717900 C 1248 96.79 1344 accept 0 ALIGNMENT 619 Y12-6k05.p1k chr12 293 1122 712725 713558 F 830 93.98 1284 accept 0 ALIGNMENT 1001 Y12-6k06.q1k chr02 29 1196 144240 145414 F 1168 96.15 1350 accept 0 ALIGNMENT 890 Y12-6k06.p1k chr02 1082 22 147119 148172 C 1061 96.32 1279 accept 0 ALIGNMENT 791 Y12-6k07.p1k chr07 5 914 180017 180913 F 910 97.14 1229 accept 0 ALIGNMENT 912 Y12-6k07.q1k chr07 1141 31 183897 184991 C 1111 96.13 1358 accept 0 ALIGNMENT 947 Y12-6k08.q1k chr05 17 1202 525183 526360 F 1186 94.44 1399 accept 0 ALIGNMENT 992 Y12-6k09.p1k chr10 1192 19 419789 420970 C 1174 95.83 1269 accept 0 ALIGNMENT 1053 Y12-6k09.q1k chr10 31 1243 417825 419044 F 1213 96.95 1307 accept 0 ALIGNMENT 926 Y12-6k10.q1k chr14 28 1128 555906 557012 F 1101 96.19 1317 accept 0 ALIGNMENT 750 Y12-6k10.p1k chr14 1203 135 558512 559579 C 1069 91.02 1300 accept 0 ALIGNMENT 0 Y12-6k11.q1k chr07 801 132 817086 817085 C 670 0.00 1397 reject_low 15 ALIGNMENT 0 Y12-6k11.q1k chr04 801 132 1352641 1352640 C 670 0.00 1397 reject_low 12 ALIGNMENT 0 Y12-6k11.q1k chr11 62 599 302558 302557 F 538 0.00 1397 reject_low 4 ALIGNMENT 115 Y12-6k11.q1k chr07 731 600 878694 878825 C 132 96.97 1397 reject_low 2 ALIGNMENT 32 Y12-6k11.q1k chr04 131 36 1206700 1206798 C 96 81.25 1397 reject_low 11 ALIGNMENT 0 Y12-6k11.q1k chr10 801 132 538024 538023 C 670 0.00 1397 reject_low 16 ALIGNMENT 0 Y12-6k11.q1k chr07 599 62 878826 878825 C 538 0.00 1397 reject_low 2 ALIGNMENT 35 Y12-6k11.q1k chr04 131 36 520479 520577 C 96 82.29 1397 reject_low 6 ALIGNMENT 32 Y12-6k11.q1k chr04 131 36 981171 981269 C 96 81.25 1397 reject_low 10 ALIGNMENT 108 Y12-6k11.q1k chr07 714 600 287352 287466 C 115 98.26 1397 reject_low 5 ALIGNMENT 0 Y12-6k11.q1k chr03 801 132 84301 84300 C 670 0.00 1397 reject_low 8 ALIGNMENT 0 Y12-6k11.q1k chr05 801 132 487836 487835 C 670 0.00 1397 reject_low 13 ALIGNMENT 0 Y12-6k11.q1k chr07 801 732 878695 878694 C 70 0.00 1397 reject_low 2 ALIGNMENT 32 Y12-6k11.q1k chr05 131 36 487835 487933 C 96 81.25 1397 reject_low 13 ALIGNMENT 0 Y12-6k11.q1k chr07 801 715 287353 287352 C 87 0.00 1397 reject_low 5 ALIGNMENT 112 Y12-6k11.q1k chr11 600 722 302558 302680 F 123 97.56 1397 reject_low 4 ALIGNMENT 762 Y12-6k11.p1k chr10 1 915 412176 413082 F 915 96.07 1309 accept 0 ALIGNMENT 0 Y12-6k11.q1k chr16 801 723 56158 56157 C 79 0.00 1397 reject_low 1 ALIGNMENT 0 Y12-6k11.q1k chr13 593 62 379419 379418 C 532 0.00 1397 reject_low 3 ALIGNMENT 890 Y12-6k11.q1k chr10 1016 33 415541 416523 C 984 98.17 1397 accept 0 ALIGNMENT 0 Y12-6k11.q1k chr03 801 132 84075 84074 C 670 0.00 1397 reject_low 7 ALIGNMENT 0 Y12-6k11.q1k chr13 801 132 768554 768553 C 670 0.00 1397 reject_low 19 ALIGNMENT 0 Y12-6k11.q1k chr12 801 132 593154 593153 C 670 0.00 1397 reject_low 17 ALIGNMENT 32 Y12-6k11.q1k chr06 131 36 137914 138012 C 96 81.25 1397 reject_low 14 ALIGNMENT 0 Y12-6k11.q1k chr07 599 62 287467 287466 C 538 0.00 1397 reject_low 5 ALIGNMENT 32 Y12-6k11.q1k chr13 131 36 768553 768651 C 96 81.25 1397 reject_low 19 ALIGNMENT 32 Y12-6k11.q1k chr12 131 36 593153 593251 C 96 81.25 1397 reject_low 17 ALIGNMENT 0 Y12-6k11.q1k chr11 723 801 302680 302679 F 79 0.00 1397 reject_low 4 ALIGNMENT 123 Y12-6k11.q1k chr13 721 594 379291 379418 C 128 99.22 1397 reject_low 3 ALIGNMENT 32 Y12-6k11.q1k chr03 131 36 84074 84172 C 96 81.25 1397 reject_low 7 ALIGNMENT 32 Y12-6k11.q1k chr07 131 36 817085 817183 C 96 81.25 1397 reject_low 15 ALIGNMENT 32 Y12-6k11.q1k chr15 131 36 970288 970386 C 96 81.25 1397 reject_low 20 ALIGNMENT 32 Y12-6k11.q1k chr03 131 36 84816 84914 C 96 81.25 1397 reject_low 9 ALIGNMENT 0 Y12-6k11.q1k chr12 801 132 941196 941195 C 670 0.00 1397 reject_low 18 ALIGNMENT 0 Y12-6k11.q1k chr13 801 722 379292 379291 C 80 0.00 1397 reject_low 3 ALIGNMENT 0 Y12-6k11.q1k chr15 801 132 970289 970288 C 670 0.00 1397 reject_low 20 ALIGNMENT 0 Y12-6k11.q1k chr06 801 132 137915 137914 C 670 0.00 1397 reject_low 14 ALIGNMENT 0 Y12-6k11.q1k chr04 801 132 1206701 1206700 C 670 0.00 1397 reject_low 11 ALIGNMENT 32 Y12-6k11.q1k chr04 131 36 1352640 1352738 C 96 81.25 1397 reject_low 12 ALIGNMENT 0 Y12-6k11.q1k chr04 801 132 981172 981171 C 670 0.00 1397 reject_low 10 ALIGNMENT 123 Y12-6k11.q1k chr16 722 591 56157 56288 C 132 98.48 1397 reject_low 1 ALIGNMENT 0 Y12-6k11.q1k chr16 590 62 56289 56288 C 529 0.00 1397 reject_low 1 ALIGNMENT 0 Y12-6k11.q1k chr04 801 132 520480 520479 C 670 0.00 1397 reject_low 6 ALIGNMENT 0 Y12-6k11.q1k chr03 801 132 84817 84816 C 670 0.00 1397 reject_low 9 ALIGNMENT 32 Y12-6k11.q1k chr12 131 36 941195 941293 C 96 81.25 1397 reject_low 18 ALIGNMENT 32 Y12-6k11.q1k chr10 131 36 538023 538121 C 96 81.25 1397 reject_low 16 ALIGNMENT 32 Y12-6k11.q1k chr03 131 36 84300 84398 C 96 81.25 1397 reject_low 8 ALIGNMENT 0 Y12-6k13.q1k chr16 441 92 769315 769314 C 350 0.00 1338 reject_low 1 ALIGNMENT 0 Y12-6k13.q1k chr04 92 441 359563 359562 F 350 0.00 1338 reject_low 4 ALIGNMENT 0 Y12-6k13.q1k chr15 564 823 438751 438750 F 260 0.00 1338 reject_low 3 ALIGNMENT 547 Y12-6k13.p1k chr11 836 13 581812 582626 C 824 89.81 1255 accept 0 ALIGNMENT 0 Y12-6k13.q1k chr12 566 823 875484 875483 F 258 0.00 1338 reject_low 2 ALIGNMENT 0 Y12-6k13.q1k chr07 823 567 700945 700944 C 257 0.00 1338 reject_low 6 ALIGNMENT 0 Y12-6k13.q1k chr16 823 566 769192 769191 C 258 0.00 1338 reject_low 1 ALIGNMENT 108 Y12-6k13.q1k chr07 566 446 700944 701062 C 121 97.52 1338 reject_low 6 ALIGNMENT 0 Y12-6k13.q1k chr07 557 823 115592 115591 F 267 0.00 1338 reject_low 5 ALIGNMENT 120 Y12-6k13.q1k chr12 445 565 875364 875484 F 121 100.00 1338 reject_low 2 ALIGNMENT 0 Y12-6k13.q1k chr07 445 92 701063 701062 C 354 0.00 1338 reject_low 6 ALIGNMENT 0 Y12-6k13.q1k chr07 92 442 115479 115478 F 351 0.00 1338 reject_low 5 ALIGNMENT 114 Y12-6k13.q1k chr07 443 556 115479 115592 F 114 100.00 1338 reject_low 5 ALIGNMENT 0 Y12-6k13.q1k chr15 92 441 438630 438629 F 350 0.00 1338 reject_low 3 ALIGNMENT 891 Y12-6k13.q1k chr11 33 1055 578185 579201 F 1023 96.68 1338 accept 0 ALIGNMENT 119 Y12-6k13.q1k chr15 442 563 438630 438751 F 122 99.18 1338 reject_low 3 ALIGNMENT 0 Y12-6k13.q1k chr12 92 444 875364 875363 F 353 0.00 1338 reject_low 2 ALIGNMENT 0 Y12-6k13.q1k chr04 566 823 359685 359684 F 258 0.00 1338 reject_low 4 ALIGNMENT 118 Y12-6k13.q1k chr04 442 565 359563 359685 F 124 99.19 1338 reject_low 4 ALIGNMENT 123 Y12-6k13.q1k chr16 565 442 769191 769314 C 124 100.00 1338 reject_low 1 ALIGNMENT 0 Y12-6k14.q1k chr11 729 807 131611 131689 F 79 0.00 1351 reject_low 1 ALIGNMENT 1003 Y12-6k14.q1k chr10 28 1233 106522 107723 F 1206 96.10 1351 accept 0 ALIGNMENT 24 Y12-6k14.q1k chr11 651 728 131533 131610 F 78 78.21 1351 reject_low 1 ALIGNMENT 574 Y12-6k14.p1k chr10 1166 298 111258 112136 C 869 90.45 1257 accept 0 ALIGNMENT 0 Y12-6k14.q1k chr11 62 650 131533 131532 F 589 0.00 1351 reject_low 1 ALIGNMENT 50 Y12-6k14.q1k chr11 808 983 131690 131866 F 176 76.70 1351 reject_low 1 ALIGNMENT 839 Y12-6k15.p1k chr11 1200 57 314742 315882 C 1144 92.74 1246 accept 0 ALIGNMENT 1014 Y12-6k15.q1k chr16 1278 36 437868 439115 C 1243 96.22 1319 ambiguous_trans 3 ALIGNMENT 1026 Y12-6k15.q1k chr10 36 1278 201461 202708 F 1243 96.62 1319 ambiguous_trans 1 ALIGNMENT 1014 Y12-6k15.q1k chr08 36 1278 89529 90776 F 1243 96.30 1319 ambiguous_trans 2 ALIGNMENT 728 Y12-6k16.p1k chr07 24 910 396604 397491 F 887 94.70 1246 accept 0 ALIGNMENT 678 Y12-6k16.q1k chr07 970 30 400228 401163 C 941 93.30 1308 accept 0 ALIGNMENT 939 Y12-6k17.q1k chr07 36 1099 613537 614586 F 1064 97.27 1342 accept 0 ALIGNMENT 661 Y12-6k17.p1k chr07 783 12 617394 618160 C 772 96.63 1216 accept 0 ALIGNMENT 97 Y12-6k18.q1k chr11 65 285 617796 618015 F 221 81.90 1315 reject_low 12 ALIGNMENT 81 Y12-6k18.q1k chr11 749 968 617795 618015 F 220 79.09 1315 reject_low 14 ALIGNMENT 124 Y12-6k18.q1k chr09 741 521 69151 69371 C 221 85.52 1315 reject_low 7 ALIGNMENT 0 Y12-6k18.q1k chr12 752 906 65207 65206 F 155 0.00 1315 reject_low 2 ALIGNMENT 109 Y12-6k18.q1k chr11 293 507 617795 618009 F 215 84.19 1315 reject_low 11 ALIGNMENT 116 Y12-6k18.q1k chr12 750 523 498949 499176 C 228 83.77 1315 reject_low 15 ALIGNMENT 0 Y12-6k18.q1k chr09 520 62 69372 69371 C 459 0.00 1315 reject_low 7 ALIGNMENT 389 Y12-6k18.q1k chr12 294 978 64066 64751 F 685 85.99 1315 reject_low 3 ALIGNMENT 0 Y12-6k18.q1k chr09 906 515 69151 69150 C 392 0.00 1315 reject_low 6 ALIGNMENT 0 Y12-6k18.q1k chr09 906 742 69152 69151 C 165 0.00 1315 reject_low 7 ALIGNMENT 0 Y12-6k18.q1k chr12 62 99 65012 65011 F 38 0.00 1315 reject_low 9 ALIGNMENT 176 Y12-6k18.q1k chr12 522 894 64066 64438 F 373 82.57 1315 reject_low 5 ALIGNMENT 113 Y12-6k18.q1k chr09 286 65 69150 69370 C 222 84.23 1315 reject_low 10 ALIGNMENT 72 Y12-6k18.q1k chr09 969 782 69150 69338 C 188 79.79 1315 reject_low 16 ALIGNMENT 128 Y12-6k18.q1k chr12 294 66 498949 499176 C 229 86.03 1315 reject_low 15 ALIGNMENT 0 Y12-6k18.q1k chr12 524 906 65207 65206 F 383 0.00 1315 reject_low 4 ALIGNMENT 207 Y12-6k18.q1k chr12 65 523 64750 65207 F 459 82.35 1315 reject_low 4 ALIGNMENT 0 Y12-6k18.q1k chr09 906 287 69151 69150 C 620 0.00 1315 reject_low 10 ALIGNMENT 0 Y12-6k18.q1k chr11 62 520 617795 617794 F 459 0.00 1315 reject_low 8 ALIGNMENT 0 Y12-6k18.q1k chr11 508 906 618009 618008 F 399 0.00 1315 reject_low 11 ALIGNMENT 0 Y12-6k18.q1k chr09 781 62 69339 69338 C 720 0.00 1315 reject_low 16 ALIGNMENT 0 Y12-6k18.q1k chr12 906 751 498950 498949 C 156 0.00 1315 reject_low 15 ALIGNMENT 0 Y12-6k18.q1k chr12 522 523 499177 498948 C 0 0.00 1315 reject_low 15 ALIGNMENT 0 Y12-6k18.q1k chr09 292 62 69372 69371 C 231 0.00 1315 reject_low 6 ALIGNMENT 149 Y12-6k18.q1k chr12 522 295 498949 499176 C 228 89.04 1315 reject_low 15 ALIGNMENT 0 Y12-6k18.q1k chr12 296 906 65207 65206 F 611 0.00 1315 reject_low 9 ALIGNMENT 967 Y12-6k18.p1k chr12 1215 19 69622 70830 C 1197 94.99 1259 accept 0 ALIGNMENT 115 Y12-6k18.q1k chr12 100 295 65012 65207 F 196 86.73 1315 reject_low 9 ALIGNMENT 129 Y12-6k18.q1k chr09 514 293 69150 69371 C 222 86.49 1315 reject_low 6 ALIGNMENT 0 Y12-6k18.q1k chr11 743 906 618016 618015 F 164 0.00 1315 reject_low 8 ALIGNMENT 83 Y12-6k18.q1k chr12 750 978 64066 64295 F 229 79.04 1315 reject_low 13 ALIGNMENT 0 Y12-6k18.q1k chr12 62 521 64066 64065 F 460 0.00 1315 reject_low 5 ALIGNMENT 122 Y12-6k18.q1k chr11 521 742 617795 618016 F 222 85.14 1315 reject_low 8 ALIGNMENT 619 Y12-6k18.q1k chr12 28 978 64029 64979 F 951 88.85 1315 reject_low 1 ALIGNMENT 0 Y12-6k18.q1k chr12 294 295 499177 498948 C 0 0.00 1315 reject_low 15 ALIGNMENT 427 Y12-6k18.q1k chr12 65 751 64522 65207 F 687 87.92 1315 reject_low 2 ALIGNMENT 61 Y12-6k18.q1k chr12 977 788 498949 499139 C 190 76.32 1315 reject_low 17 ALIGNMENT 0 Y12-6k18.q1k chr11 62 748 617795 617794 F 687 0.00 1315 reject_low 14 ALIGNMENT 0 Y12-6k18.q1k chr12 787 62 499140 499139 C 726 0.00 1315 reject_low 17 ALIGNMENT 0 Y12-6k18.q1k chr12 62 749 64066 64065 F 688 0.00 1315 reject_low 13 ALIGNMENT 0 Y12-6k18.q1k chr11 286 906 618015 618014 F 621 0.00 1315 reject_low 12 ALIGNMENT 0 Y12-6k18.q1k chr12 62 293 64066 64065 F 232 0.00 1315 reject_low 3 ALIGNMENT 817 Y12-6k18.q1k chr12 65 1223 64294 65465 F 1159 91.03 1315 accept 0 ALIGNMENT 0 Y12-6k18.q1k chr11 62 292 617795 617794 F 231 0.00 1315 reject_low 11 ALIGNMENT 823 Y12-6k19.q1k chr13 32 972 207017 207961 F 941 96.81 1263 accept 0 ALIGNMENT 614 Y12-6k19.p1k chr13 1088 263 212253 213075 C 826 92.25 1266 accept 0 ALIGNMENT 1048 Y12-6k20.q1k chr10 1286 33 45452 46716 C 1254 96.25 1331 accept 0 ALIGNMENT 729 Y12-6k20.p1k chr10 10 942 42758 43684 F 933 94.00 1337 accept 0 ALIGNMENT 791 Y12-6k22.p1k chr02 108 1056 690413 691354 F 949 95.79 1230 accept 0 ALIGNMENT 1040 Y12-6k22.q1k chr02 1269 29 693202 694424 C 1241 96.54 1311 accept 0 ALIGNMENT 1048 Y12-6k23.q1k chr13 37 1214 36113 37298 F 1178 97.03 1225 accept 0 ALIGNMENT 729 Y12-6k23.p1k chr13 1094 215 39762 40630 C 880 96.02 1170 accept 0 ALIGNMENT 71 Y12-6k24.p1k chr04 176 405 1072064 1072293 F 230 77.39 1156 reject_low 1 ALIGNMENT 943 Y12-6k24.p1k chr04 24 1055 768452 769477 F 1032 97.87 1156 accept 0 ALIGNMENT 0 Y12-6k24.p1k chr04 406 794 1072293 1072292 F 389 0.00 1156 reject_low 1 ALIGNMENT 0 Y12-6k24.p1k chr04 62 175 1072064 1072063 F 114 0.00 1156 reject_low 1 ALIGNMENT 1030 Y12-6k24.q1k chr04 1196 32 772169 773338 C 1165 97.42 1262 accept 0 ALIGNMENT 1031 Y12-6l01.q1k chr11 28 1237 389734 390944 F 1210 96.45 1354 accept 0 ALIGNMENT 685 Y12-6l01.p1k chr11 1024 209 392580 393392 C 816 95.71 1245 accept 0 ALIGNMENT 882 Y12-6l02.p1k chr07 1028 17 192290 193298 C 1012 97.13 1237 accept 0 ALIGNMENT 126 Y12-6l03.q1k chr03 184 31 303899 304052 C 154 94.16 1346 reject_low 1 ALIGNMENT 76 Y12-6l03.q1k chr10 31 184 10458 10610 F 154 83.77 1346 reject_low 2 ALIGNMENT 640 Y12-6l03.p1k chr12 265 1156 1053174 1054064 F 892 92.94 1275 accept 0 ALIGNMENT 0 Y12-6l03.q1k chr10 185 834 10610 10609 F 650 0.00 1346 reject_low 2 ALIGNMENT 1009 Y12-6l03.q1k chr12 1243 31 1058222 1059446 C 1213 96.04 1346 accept 0 ALIGNMENT 0 Y12-6l03.q1k chr03 834 185 303900 303899 C 650 0.00 1346 reject_low 1 ALIGNMENT 934 Y12-6l04.q1k chr09 44 1261 86492 87708 F 1218 93.68 1327 accept 0 ALIGNMENT 800 Y12-6l04.p1k chr09 1121 35 89446 90546 C 1087 92.92 1241 accept 0 ALIGNMENT 887 Y12-6l05.q1k chr09 1084 25 264687 265759 C 1060 95.75 1325 accept 0 ALIGNMENT 910 Y12-6l05.p1k chr09 55 1243 260976 262146 F 1189 94.20 1301 accept 0 ALIGNMENT 948 Y12-6l08.p1k chr04 16 1054 363408 364441 F 1039 98.17 1209 accept 0 ALIGNMENT 1031 Y12-6l08.q1k chr04 1231 26 366279 367497 C 1206 95.94 1321 accept 0 ALIGNMENT 513 Y12-6l09.q1k chr15 35 933 26016 26906 F 899 86.54 1413 reject_low 2 ALIGNMENT 563 Y12-6l09.q1k chr09 33 933 20259 21151 F 901 88.35 1413 reject_low 1 ALIGNMENT 560 Y12-6l09.p1k chr10 1002 271 23979 24696 C 732 94.81 1355 accept 0 ALIGNMENT 522 Y12-6l09.q1k chr10 35 933 20241 21131 F 899 86.87 1413 accept 0 ALIGNMENT 847 Y12-6l10.p1k chr08 1163 31 417154 418260 C 1133 93.56 1294 accept 0 ALIGNMENT 76 Y12-6l11.p1k chr10 644 556 422845 422934 C 89 95.51 1242 reject_low 1 ALIGNMENT 38 Y12-6l11.p1k chr09 799 720 197138 197222 C 80 87.50 1242 reject_low 10 ALIGNMENT 0 Y12-6l11.p1k chr10 638 826 391031 391030 F 189 0.00 1242 reject_low 3 ALIGNMENT 0 Y12-6l11.p1k chr05 715 62 431574 431573 C 654 0.00 1242 reject_low 16 ALIGNMENT 0 Y12-6l11.p1k chr15 811 812 970279 976242 C 0 0.00 1242 accept_trans 0 ALIGNMENT 39 Y12-6l11.p1k chr14 799 716 102194 102280 C 84 85.71 1242 reject_low 9 ALIGNMENT 0 Y12-6l11.p1k chr09 826 800 197139 197138 C 27 0.00 1242 reject_low 10 ALIGNMENT 0 Y12-6l11.p1k chr08 826 795 91771 91770 C 32 0.00 1242 reject_low 14 ALIGNMENT 0 Y12-6l11.p1k chr10 826 798 354456 354455 C 29 0.00 1242 reject_low 6 ALIGNMENT 882 Y12-6l11.q1k chr15 28 1122 967552 968633 F 1095 95.07 1438 accept_trans 0 ALIGNMENT 41 Y12-6l11.p1k chr10 797 716 354455 354538 C 82 87.80 1242 reject_low 6 ALIGNMENT 0 Y12-6l11.p1k chr13 826 800 362589 362588 C 27 0.00 1242 reject_low 11 ALIGNMENT 0 Y12-6l11.p1k chr12 715 62 476064 476063 C 654 0.00 1242 reject_low 8 ALIGNMENT 28 Y12-6l11.p1k chr08 794 716 389187 389267 C 79 82.28 1242 reject_low 15 ALIGNMENT 0 Y12-6l11.p1k chr09 826 802 300408 300407 C 25 0.00 1242 reject_low 5 ALIGNMENT 0 Y12-6l11.p1k chr05 826 800 443396 443395 C 27 0.00 1242 reject_low 12 ALIGNMENT 0 Y12-6l11.p1k chr04 559 62 1175899 1175898 C 498 0.00 1242 reject_low 4 ALIGNMENT 229 Y12-6l11.p1k chr15 1211 809 969871 970281 C 403 87.59 1242|0,3 accept_trans 0 ALIGNMENT 0 Y12-6l11.p1k chr14 715 62 632089 632088 C 654 0.00 1242 reject_low 13 ALIGNMENT 28 Y12-6l11.p1k chr08 794 716 91770 91850 C 79 82.28 1242 reject_low 14 ALIGNMENT 0 Y12-6l11.p1k chr04 826 638 1175822 1175821 C 189 0.00 1242 reject_low 4 ALIGNMENT 39 Y12-6l11.p1k chr05 799 716 448982 449068 C 84 85.71 1242 reject_low 7 ALIGNMENT 0 Y12-6l11.p1k chr10 62 558 390952 390951 F 497 0.00 1242 reject_low 3 ALIGNMENT 689 Y12-6l11.p1k chr15 813 18 976241 977034 C 796 97.49 1242|2,0 accept_trans 0 ALIGNMENT 0 Y12-6l11.p1k chr05 715 62 449069 449068 C 654 0.00 1242 reject_low 7 ALIGNMENT 0 Y12-6l11.p1k chr09 719 62 197223 197222 C 658 0.00 1242 reject_low 10 ALIGNMENT 0 Y12-6l11.p1k chr10 826 645 422846 422845 C 182 0.00 1242 reject_low 1 ALIGNMENT 39 Y12-6l11.p1k chr12 799 716 475977 476063 C 84 85.71 1242 reject_low 8 ALIGNMENT 0 Y12-6l11.p1k chr10 555 62 422935 422934 C 494 0.00 1242 reject_low 1 ALIGNMENT 0 Y12-6l11.p1k chr12 826 800 475978 475977 C 27 0.00 1242 reject_low 8 ALIGNMENT 75 Y12-6l11.p1k chr10 559 637 390952 391031 F 79 98.73 1242 reject_low 3 ALIGNMENT 0 Y12-6l11.p1k chr09 715 62 300498 300497 C 654 0.00 1242 reject_low 5 ALIGNMENT 0 Y12-6l11.p1k chr13 638 826 572954 572953 F 189 0.00 1242 reject_low 2 ALIGNMENT 0 Y12-6l11.p1k chr14 826 791 632012 632011 C 36 0.00 1242 reject_low 13 ALIGNMENT 75 Y12-6l11.p1k chr04 637 560 1175821 1175898 C 78 98.72 1242 reject_low 4 ALIGNMENT 34 Y12-6l11.p1k chr14 790 716 632011 632088 C 75 85.33 1242 reject_low 13 ALIGNMENT 0 Y12-6l11.p1k chr08 715 62 389268 389267 C 654 0.00 1242 reject_low 15 ALIGNMENT 0 Y12-6l11.p1k chr08 715 62 91851 91850 C 654 0.00 1242 reject_low 14 ALIGNMENT 33 Y12-6l11.p1k chr05 799 716 443395 443481 C 84 83.33 1242 reject_low 12 ALIGNMENT 0 Y12-6l11.p1k chr14 826 800 102195 102194 C 27 0.00 1242 reject_low 9 ALIGNMENT 38 Y12-6l11.p1k chr09 801 716 300407 300497 C 86 86.05 1242 reject_low 5 ALIGNMENT 0 Y12-6l11.p1k chr14 715 62 102281 102280 C 654 0.00 1242 reject_low 9 ALIGNMENT 78 Y12-6l11.p1k chr13 556 637 572872 572954 F 82 98.78 1242 reject_low 2 ALIGNMENT 36 Y12-6l11.p1k chr13 799 716 362588 362674 C 84 84.52 1242 reject_low 11 ALIGNMENT 0 Y12-6l11.p1k chr13 715 62 362675 362674 C 654 0.00 1242 reject_low 11 ALIGNMENT 0 Y12-6l11.p1k chr05 826 800 448983 448982 C 27 0.00 1242 reject_low 7 ALIGNMENT 0 Y12-6l11.p1k chr08 826 795 389188 389187 C 32 0.00 1242 reject_low 15 ALIGNMENT 0 Y12-6l11.p1k chr05 826 795 431494 431493 C 32 0.00 1242 reject_low 16 ALIGNMENT 0 Y12-6l11.p1k chr10 715 62 354539 354538 C 654 0.00 1242 reject_low 6 ALIGNMENT 25 Y12-6l11.p1k chr05 794 716 431493 431573 C 79 81.01 1242 reject_low 16 ALIGNMENT 0 Y12-6l11.p1k chr13 62 555 572872 572871 F 494 0.00 1242 reject_low 2 ALIGNMENT 0 Y12-6l11.p1k chr05 715 62 443482 443481 C 654 0.00 1242 reject_low 12 ALIGNMENT 947 Y12-6l12.p1k chr13 18 1202 491753 492938 F 1185 94.85 1235 accept 0 ALIGNMENT 951 Y12-6l12.q1k chr13 1203 31 495787 496947 C 1173 95.23 1393 accept 0 ALIGNMENT 0 Y12-6l13.q1k chr09 62 138 340252 340251 F 77 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-6l13.q1k chr09 743 871 340844 340972 F 129 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-6l13.q1k chr09 560 687 340661 340788 F 128 0.00 1350 reject_low 2 ALIGNMENT 20 Y12-6l13.q1k chr13 143 186 760721 760764 F 44 84.09 1350 reject_low 1 ALIGNMENT 0 Y12-6l13.q1k chr13 353 821 760930 760929 F 469 0.00 1350 reject_low 1 ALIGNMENT 24 Y12-6l13.q1k chr09 872 954 340973 341055 F 83 79.52 1350 reject_low 2 ALIGNMENT 0 Y12-6l13.q1k chr13 187 307 760765 760885 F 121 0.00 1350 reject_low 1 ALIGNMENT 21 Y12-6l13.q1k chr09 688 742 340789 340843 F 55 81.82 1350 reject_low 2 ALIGNMENT 0 Y12-6l13.q1k chr09 348 467 340461 340568 F 120 0.00 1350 reject_low 2 ALIGNMENT 649 Y12-6l13.p1k chr15 773 4 913722 914481 C 770 96.75 1360 accept 0 ALIGNMENT 0 Y12-6l13.q1k chr13 108 142 760686 760720 F 35 0.00 1350 reject_low 1 ALIGNMENT 25 Y12-6l13.q1k chr13 29 107 760607 760685 F 79 78.48 1350 reject_low 1 ALIGNMENT 21 Y12-6l13.q1k chr09 139 196 340252 340309 F 58 81.03 1350 reject_low 2 ALIGNMENT 34 Y12-6l13.q1k chr13 308 352 760886 760930 F 45 93.33 1350 reject_low 1 ALIGNMENT 22 Y12-6l13.q1k chr09 468 559 340569 340660 F 92 76.09 1350 reject_low 2 ALIGNMENT 25 Y12-6l13.q1k chr09 296 347 340409 340460 F 52 82.69 1350 reject_low 2 ALIGNMENT 0 Y12-6l13.q1k chr09 197 295 340310 340408 F 99 0.00 1350 reject_low 2 ALIGNMENT 1074 Y12-6l13.q1k chr15 24 1269 910133 911386 F 1246 96.15 1350 accept 0 ALIGNMENT 589 Y12-6l14.p1k chr16 1121 192 526414 527321 C 930 89.25 1292 accept 0 ALIGNMENT 844 Y12-6l15.q1k chr12 998 29 610504 611466 C 970 96.39 1408 accept 0 ALIGNMENT 552 Y12-6l15.p1k chr12 16 796 605953 606718 F 781 91.68 1227 accept 0 ALIGNMENT 901 Y12-6l16.p1k chr12 1207 77 409890 411018 C 1131 94.16 1223 accept 0 ALIGNMENT 0 Y12-6l16.p1k chr12 380 838 234086 234085 F 459 0.00 1223 reject_low 1 ALIGNMENT 142 Y12-6l16.p1k chr12 77 379 233788 234086 F 303 83.50 1223 reject_low 1 ALIGNMENT 916 Y12-6l16.q1k chr12 30 1137 405964 407069 F 1108 95.76 1494 accept 0 ALIGNMENT 623 Y12-6l17.p1k chr08 1020 260 516761 517527 C 761 95.01 1249 accept 0 ALIGNMENT 888 Y12-6l17.q1k chr08 12 1038 515462 516503 F 1027 96.79 1280 accept 0 ALIGNMENT 604 Y12-6l18.p1k chr07 940 217 1038755 1039472 C 724 96.41 1340 reject_bad_break 0 ALIGNMENT 21 Y12-6l18.p1k chr07 149 125 1039541 1039565 C 25 96.00 1340 reject_bad_break 0 ALIGNMENT 0 Y12-6l18.p1k chr07 216 150 1039473 1039540 C 67 0.00 1340 reject_bad_break 0 ALIGNMENT 567 Y12-6l19.p1k chr07 1005 387 364352 364970 C 619 97.74 1234 reject_low 1 ALIGNMENT 997 Y12-6l19.q1k chr16 1211 35 176739 177918 C 1177 96.43 1331 accept 0 ALIGNMENT 748 Y12-6l19.p1k chr16 166 1132 173849 174821 F 967 93.49 1234 accept 0 ALIGNMENT 0 Y12-6l19.p1k chr07 386 272 364971 364970 C 115 0.00 1234 reject_low 1 ALIGNMENT 833 Y12-6l20.p1k chr13 27 1100 335246 336310 F 1074 93.85 1274 accept 0 ALIGNMENT 0 Y12-6l20.q1k chr04 265 917 829408 829407 F 653 0.00 1320 reject_low 1 ALIGNMENT 966 Y12-6l20.q1k chr13 1155 41 338655 339774 C 1115 97.04 1320 accept 0 ALIGNMENT 129 Y12-6l20.q1k chr04 77 264 829219 829408 F 188 90.43 1320 reject_low 1 ALIGNMENT 0 Y12-6l20.q1k chr04 62 76 829219 829218 F 15 0.00 1320 reject_low 1 ALIGNMENT 877 Y12-6l21.p1k chr08 1116 41 492413 493477 C 1076 96.19 1186 accept 0 ALIGNMENT 1083 Y12-6l21.q1k chr08 35 1228 489398 490594 F 1194 97.40 1312 accept 0 ALIGNMENT 775 Y12-6l22.p1k chr04 101 1043 1127757 1128682 F 943 95.55 1235 accept 0 ALIGNMENT 403 Y12-6l23.p1k chr11 346 862 141342 141852 F 517 94.78 1153 accept_chi 1 ALIGNMENT 750 Y12-6l23.q1k chr08 150 1111 489463 490412 F 962 93.56 1419 accept_chi 0 ALIGNMENT 724 Y12-6l24.p1k chr16 217 1024 764092 764898 F 808 97.77 1097 accept 0 ALIGNMENT 848 Y12-6l24.q1k chr16 972 28 766809 767745 C 945 98.41 1314 accept 0 ALIGNMENT 866 Y12-6m01.p1k chr08 67 1233 9935 11102 F 1167 92.54 1261 accept 0 ALIGNMENT 976 Y12-6m01.q1k chr08 1236 33 12945 14139 C 1204 95.35 1296 accept 0 ALIGNMENT 899 Y12-6m02.q1k chr10 34 1049 600522 601534 F 1016 97.24 1348 accept 0 ALIGNMENT 875 Y12-6m02.p1k chr10 1077 39 603771 604826 C 1039 95.96 1286 accept 0 ALIGNMENT 769 Y12-6m03.p1k chr07 1159 192 1020009 1020973 C 968 94.42 1309 accept 0 ALIGNMENT 1076 Y12-6m03.q1k chr07 31 1291 1015382 1016638 F 1261 96.27 1320 accept 0 ALIGNMENT 851 Y12-6m04.q1k chr13 1181 34 372882 374035 C 1148 93.29 1349 ambiguous_trans 10 ALIGNMENT 580 Y12-6m04.q1k chr05 1181 42 443579 444723 C 1140 85.35 1349 ambiguous_trans 18 ALIGNMENT 74 Y12-6m04.q1k chr13 1181 1039 378470 378618 C 143 87.41 1349 ambiguous_trans 24 ALIGNMENT 893 Y12-6m04.q1k chr15 34 1188 599401 600562 F 1155 94.29 1349 ambiguous_trans 7 ALIGNMENT 630 Y12-6m04.q1k chr15 42 1181 122296 123441 F 1140 87.02 1349 ambiguous_trans 17 ALIGNMENT 698 Y12-6m04.q1k chr16 1181 34 850811 851964 C 1148 88.85 1349 ambiguous_trans 14 ALIGNMENT 692 Y12-6m04.q1k chr04 34 1181 1100348 1101501 F 1148 88.68 1349 ambiguous_trans 15 ALIGNMENT 848 Y12-6m04.q1k chr05 1166 34 492694 493830 C 1133 93.47 1349 ambiguous_trans 11 ALIGNMENT 83 Y12-6m04.q1k chr13 1039 1188 184173 184329 F 150 88.67 1349 ambiguous_trans 23 ALIGNMENT 962 Y12-6m04.q1k chr07 32 1181 540348 541503 F 1150 96.35 1349 ambiguous_trans 4 ALIGNMENT 26 Y12-6m04.q1k chr13 1039 1181 196335 196482 F 143 74.83 1349 ambiguous_trans 25 ALIGNMENT 0 Y12-6m04.q1k chr13 1038 62 362915 362914 C 977 0.00 1349 ambiguous_trans 22 ALIGNMENT 558 Y12-6m04.q1k chr04 34 1181 985790 986942 F 1148 84.58 1349 ambiguous_trans 21 ALIGNMENT 991 Y12-6m04.q1k chr02 32 1188 225620 226783 F 1157 97.06 1349 ambiguous_trans 1 ALIGNMENT 86 Y12-6m04.q1k chr13 1188 1039 362758 362914 C 150 89.33 1349 ambiguous_trans 22 ALIGNMENT 890 Y12-6m04.q1k chr02 34 1188 264159 265320 F 1155 94.20 1349 ambiguous_trans 8 ALIGNMENT 580 Y12-6m04.q1k chr12 1181 42 476161 477305 C 1140 85.35 1349 ambiguous_trans 19 ALIGNMENT 0 Y12-6m04.q1k chr13 1038 62 378619 378618 C 977 0.00 1349 ambiguous_trans 24 ALIGNMENT 700 Y12-6m04.q1k chr13 34 1188 188750 189911 F 1155 88.83 1349 ambiguous_trans 13 ALIGNMENT 982 Y12-6m04.q1k chr13 1188 32 357176 358339 C 1157 96.80 1349 ambiguous_trans 2 ALIGNMENT 0 Y12-6m04.q1k chr13 62 1038 196335 196334 F 977 0.00 1349 ambiguous_trans 25 ALIGNMENT 580 Y12-6m04.q1k chr13 42 1181 200925 202069 F 1140 85.35 1349 ambiguous_trans 20 ALIGNMENT 692 Y12-6m04.q1k chr16 34 1181 848997 850150 F 1148 88.68 1349 ambiguous_trans 16 ALIGNMENT 0 Y12-6m04.q1k chr13 62 1038 184173 184172 F 977 0.00 1349 ambiguous_trans 23 ALIGNMENT 893 Y12-6m04.q1k chr07 1188 34 817570 818731 C 1155 94.29 1349 ambiguous_trans 6 ALIGNMENT 700 Y12-6m04.q1k chr08 1188 34 543782 544943 C 1155 88.83 1349 ambiguous_trans 12 ALIGNMENT 953 Y12-6m04.q1k chr10 32 1181 482545 483700 F 1150 96.09 1349 ambiguous_trans 5 ALIGNMENT 910 Y12-6m04.p1k chr08 1116 40 69426 70516 C 1077 95.82 1288 accept 0 ALIGNMENT 851 Y12-6m04.q1k chr12 1181 34 215267 216420 C 1148 93.29 1349 ambiguous_trans_ua 9 ALIGNMENT 958 Y12-6m04.q1k chr14 1188 32 96782 97945 C 1157 96.11 1349 ambiguous_trans 3 ALIGNMENT 151 Y12-6m05.q1k chr15 753 1090 1082789 1083136 F 338 83.14 1360 reject_low 24 ALIGNMENT 910 Y12-6m05.q1k chr02 33 1139 808288 809392 F 1107 94.67 1360 reject_low 1 ALIGNMENT 260 Y12-6m05.q1k chr14 697 1090 781817 782211 F 394 89.34 1360 reject_low 11 ALIGNMENT 218 Y12-6m05.q1k chr12 753 1105 1062871 1063223 F 353 88.10 1360 reject_low 19 ALIGNMENT 0 Y12-6m05.p1k chr05 481 828 6791 6790 F 348 0.00 1303 reject_low 12 ALIGNMENT 0 Y12-6m05.q1k chr07 752 62 6698 6697 C 691 0.00 1360 reject_low 17 ALIGNMENT 0 Y12-6m05.q1k chr14 62 696 781817 781816 F 635 0.00 1360 reject_low 11 ALIGNMENT 175 Y12-6m05.q1k chr03 697 1028 307696 308036 F 332 85.54 1360 reject_low 20 ALIGNMENT 0 Y12-6m05.q1k chr13 62 753 922595 922594 F 692 0.00 1360 reject_low 23 ALIGNMENT 0 Y12-6m05.q1k chr11 696 62 2283 2282 C 635 0.00 1360 reject_low 22 ALIGNMENT 210 Y12-6m05.q1k chr07 1139 753 6311 6697 C 387 85.53 1360 reject_low 17 ALIGNMENT 151 Y12-6m05.q1k chr09 697 1090 433825 434227 F 394 80.96 1360 reject_low 3 ALIGNMENT 446 Y12-6m05.p1k chr02 1129 263 811403 812274 C 867 86.04 1303 reject_low 1 ALIGNMENT 151 Y12-6m05.q1k chr16 1090 753 8005 8352 C 338 83.14 1360 reject_low 25 ALIGNMENT 0 Y12-6m05.q1k chr02 696 62 8070 8069 C 635 0.00 1360 reject_low 9 ALIGNMENT 222 Y12-6m05.q1k chr09 1139 753 8814 9200 C 387 86.56 1360 reject_low 14 ALIGNMENT 0 Y12-6m05.q1k chr12 796 62 223062 223061 C 735 0.00 1360 reject_low 26 ALIGNMENT 0 Y12-6m05.q1k chr01 752 62 2215 2214 C 691 0.00 1360 reject_low 16 ALIGNMENT 0 Y12-6m05.q1k chr15 752 62 11956 11955 C 691 0.00 1360 reject_low 21 ALIGNMENT 90 Y12-6m05.q1k chr12 1090 797 222758 223061 C 294 78.91 1360 reject_low 26 ALIGNMENT 462 Y12-6m05.p1k chr10 1084 263 743885 744718 C 822 87.23 1303 reject_low 6 ALIGNMENT 213 Y12-6m05.q1k chr01 1139 753 1828 2214 C 387 85.79 1360 reject_low 16 ALIGNMENT 416 Y12-6m05.p1k chr07 1129 263 1082665 1083541 C 867 84.31 1303 accept_tel 0 ALIGNMENT 0 Y12-6m05.q1k chr10 752 62 9184 9183 C 691 0.00 1360 reject_low 15 ALIGNMENT 0 Y12-6m05.q1k chr16 752 62 8353 8352 C 691 0.00 1360 reject_low 25 ALIGNMENT 260 Y12-6m05.q1k chr12 1090 697 13152 13546 C 394 89.34 1360 reject_low 10 ALIGNMENT 634 Y12-6m05.p1k chr06 263 1076 5630 6448 F 814 93.73 1303 reject_low 2 ALIGNMENT 0 Y12-6m05.q1k chr09 62 696 433825 433824 F 635 0.00 1360 reject_low 3 ALIGNMENT 0 Y12-6m05.q1k chr12 696 62 13547 13546 C 635 0.00 1360 reject_low 10 ALIGNMENT 952 Y12-6m05.q1k chr07 32 1139 1079547 1080653 F 1108 95.85 1360 accept_tel 0 ALIGNMENT 446 Y12-6m05.p1k chr13 263 1129 6443 7314 F 867 86.04 1303 reject_low 5 ALIGNMENT 222 Y12-6m05.q1k chr10 1139 753 8797 9183 C 387 86.56 1360 reject_low 15 ALIGNMENT 214 Y12-6m05.q1k chr15 1090 753 11617 11955 C 338 88.46 1360 reject_low 21 ALIGNMENT 161 Y12-6m05.p1k chr05 263 480 6574 6791 F 218 92.66 1303 reject_low 12 ALIGNMENT 0 Y12-6m05.q1k chr15 62 752 1082789 1082788 F 691 0.00 1360 reject_low 24 ALIGNMENT 0 Y12-6m05.q1k chr04 62 763 1523198 1523197 F 702 0.00 1360 reject_low 18 ALIGNMENT 200 Y12-6m05.q1k chr05 688 1139 63624 64069 F 452 83.19 1360 reject_low 13 ALIGNMENT 455 Y12-6m05.p1k chr14 263 1129 7527 8400 F 867 86.27 1303 reject_low 4 ALIGNMENT 466 Y12-6m05.p1k chr04 263 1074 1003 1822 F 812 87.44 1303 reject_low 7 ALIGNMENT 151 Y12-6m05.q1k chr11 1090 697 1880 2282 C 394 80.96 1360 reject_low 22 ALIGNMENT 153 Y12-6m05.q1k chr13 754 1090 922595 922941 F 337 83.38 1360 reject_low 23 ALIGNMENT 454 Y12-6m05.p1k chr08 263 1068 5604 6414 F 806 87.22 1303 reject_low 8 ALIGNMENT 486 Y12-6m05.p1k chr09 1074 263 438156 438964 C 812 88.55 1303 reject_low 3 ALIGNMENT 20 Y12-6m05.q1k chr08 777 754 12313 12336 C 24 95.83 1360 reject_low 8 ALIGNMENT 201 Y12-6m05.q1k chr08 1139 778 11942 12303 C 362 85.91 1360 reject_low 8 ALIGNMENT 0 Y12-6m05.q1k chr09 752 62 9201 9200 C 691 0.00 1360 reject_low 14 ALIGNMENT 216 Y12-6m05.q1k chr04 764 1114 1523198 1523548 F 351 88.03 1360 reject_low 18 ALIGNMENT 0 Y12-6m05.q1k chr05 62 687 63624 63623 F 626 0.00 1360 reject_low 13 ALIGNMENT 0 Y12-6m05.q1k chr08 753 62 12337 12336 C 692 0.00 1360 reject_low 8 ALIGNMENT 0 Y12-6m05.q1k chr03 62 696 307696 307695 F 635 0.00 1360 reject_low 20 ALIGNMENT 0 Y12-6m05.q1k chr08 777 778 12304 12312 C 0 0.00 1360 reject_low 8 ALIGNMENT 0 Y12-6m05.q1k chr12 62 752 1062871 1062870 F 691 0.00 1360 reject_low 19 ALIGNMENT 246 Y12-6m05.q1k chr02 1139 697 7626 8069 C 443 86.00 1360 reject_low 9 ALIGNMENT 910 Y12-6m06.p1k chr02 182 1302 414022 415138 F 1121 94.83 1336 accept 0 ALIGNMENT 0 Y12-6m06.p1k chr02 342 227 169380 169379 C 116 0.00 1336 reject_low 1 ALIGNMENT 991 Y12-6m06.q1k chr02 1180 27 417774 418932 C 1154 96.62 1380 accept 0 ALIGNMENT 0 Y12-6m06.p1k chr02 943 919 168805 168804 C 25 0.00 1336 reject_low 1 ALIGNMENT 463 Y12-6m06.p1k chr02 918 343 168804 169379 C 576 93.92 1336 reject_low 1 ALIGNMENT 32 Y12-6m07.p1k chr10 43 170 112176 112303 F 128 75.78 1320 reject_low 1 ALIGNMENT 0 Y12-6m07.p1k chr10 171 715 112303 112302 F 545 0.00 1320 reject_low 1 ALIGNMENT 893 Y12-6m07.q1k chr04 86 1241 708788 709942 F 1156 93.51 1394 accept 0 ALIGNMENT 527 Y12-6m07.p1k chr04 1123 359 713533 714291 C 765 90.72 1320 accept 0 ALIGNMENT 622 Y12-6m08.p1k chr13 290 1024 246966 247693 F 735 96.19 1317 accept 0 ALIGNMENT 897 Y12-6m08.q1k chr13 1147 30 251100 252223 C 1118 94.72 1445 accept 0 ALIGNMENT 913 Y12-6m10.p1k chr12 16 1244 460415 461651 F 1229 93.08 1290 accept 0 ALIGNMENT 835 Y12-6m10.p1k chr12 157 1244 451419 452514 F 1088 93.75 1290 reject_low 1 ALIGNMENT 1014 Y12-6m10.q1k chr12 1272 27 455107 456342 C 1246 95.10 1374 reject_low 1 ALIGNMENT 0 Y12-6m10.p1k chr12 125 504 489754 489753 F 380 0.00 1290 reject_low 2 ALIGNMENT 0 Y12-6m10.p1k chr12 125 156 451419 451418 F 32 0.00 1290 reject_low 1 ALIGNMENT 531 Y12-6m10.p1k chr12 505 1196 489754 490436 F 692 93.64 1290 reject_low 2 ALIGNMENT 1014 Y12-6m10.q1k chr12 1272 27 464244 465479 C 1246 95.10 1374 accept 0 ALIGNMENT 0 Y12-6m11.p1k chr08 259 245 4952 4951 C 15 0.00 1308 reject_low 14 ALIGNMENT 0 Y12-6m11.p1k chr08 201 225 557371 557368 F 25 0.00 1308 reject_low 17 ALIGNMENT 658 Y12-6m11.p1k chr07 78 1078 1084613 1085624 F 1001 90.21 1308 reject_low 4 ALIGNMENT 964 Y12-6m11.q1k chr08 1264 35 561083 562321 C 1230 93.74 1305 reject_low 17 ALIGNMENT 689 Y12-6m11.p1k chr09 1078 66 5733 6756 C 1013 90.92 1308 ambiguous_tel 0 ALIGNMENT 538 Y12-6m11.p1k chr08 1078 260 4126 4951 C 819 90.48 1308 reject_low 14 ALIGNMENT 652 Y12-6m11.p1k chr13 1078 78 4270 5275 C 1001 90.11 1308 reject_low 10 ALIGNMENT 0 Y12-6m11.q1k chr06 62 617 2 1 F 556 0.00 1305 reject_low 18 ALIGNMENT 652 Y12-6m11.p1k chr12 1078 78 9929 10934 C 1001 90.11 1308 reject_low 3 ALIGNMENT 652 Y12-6m11.p1k chr12 1078 78 4394 5399 C 1001 90.11 1308 reject_low 12 ALIGNMENT 1045 Y12-6m11.q1k chr10 35 1264 194 1427 F 1230 95.77 1305 ambiguous_tel 1 ALIGNMENT 77 Y12-6m11.p1k chr08 78 200 557248 557370 F 123 87.80 1308 reject_low 17 ALIGNMENT 77 Y12-6m11.p1k chr02 200 78 5462 5584 C 123 87.80 1308 reject_low 16 ALIGNMENT 976 Y12-6m11.q1k chr12 1264 35 1070268 1071506 C 1230 94.07 1305 reject_low 13 ALIGNMENT 982 Y12-6m11.q1k chr02 35 1264 6 1244 F 1230 94.23 1305 reject_low 16 ALIGNMENT 950 Y12-6m11.q1k chr04 1264 96 1530730 1531908 C 1169 94.61 1305 reject_low 11 ALIGNMENT 79 Y12-6m11.p1k chr05 200 82 6137 6255 C 119 89.08 1308 reject_low 15 ALIGNMENT 976 Y12-6m11.q1k chr12 1264 35 1076931 1078169 C 1230 94.07 1305 reject_low 7 ALIGNMENT 0 Y12-6m11.p1k chr02 225 201 5464 5461 C 25 0.00 1308 reject_low 16 ALIGNMENT 965 Y12-6m11.q1k chr08 35 1243 171 1388 F 1209 94.21 1305 reject_low 14 ALIGNMENT 724 Y12-6m11.p1k chr05 66 970 570565 571463 F 905 94.36 1308 ambiguous_tel 2 ALIGNMENT 689 Y12-6m11.p1k chr10 1078 66 5716 6739 C 1013 90.92 1308 ambiguous_tel 1 ALIGNMENT 651 Y12-6m11.p1k chr16 111 1078 942804 943782 F 968 90.81 1308 reject_low 9 ALIGNMENT 0 Y12-6m11.q1k chr04 95 62 1531909 1531908 C 34 0.00 1305 reject_low 11 ALIGNMENT 591 Y12-6m11.p1k chr08 226 1078 557369 558236 F 853 91.56 1308 reject_low 17 ALIGNMENT 657 Y12-6m11.p1k chr04 78 1078 1525712 1526718 F 1001 90.21 1308 reject_low 11 ALIGNMENT 965 Y12-6m11.q1k chr12 31 1264 5842 7084 F 1234 93.68 1305 reject_low 3 ALIGNMENT 657 Y12-6m11.p1k chr12 78 1078 1071913 1072919 F 1001 90.21 1308 reject_low 7 ALIGNMENT 975 Y12-6m11.q1k chr05 47 1243 2 1207 F 1197 94.74 1305 reject_low 15 ALIGNMENT 976 Y12-6m11.q1k chr15 1264 35 1089895 1091133 C 1230 94.07 1305 reject_low 8 ALIGNMENT 658 Y12-6m11.p1k chr14 1078 78 5344 6355 C 1001 90.21 1308 reject_low 6 ALIGNMENT 983 Y12-6m11.q1k chr07 1264 35 1089636 1090871 C 1230 94.23 1305 reject_low 4 ALIGNMENT 0 Y12-6m11.p1k chr05 225 201 6139 6136 C 25 0.00 1308 reject_low 15 ALIGNMENT 597 Y12-6m11.p1k chr02 1078 226 4595 5463 C 853 91.68 1308 reject_low 16 ALIGNMENT 572 Y12-6m11.p1k chr06 1078 78 3432 4422 C 1001 88.11 1308 reject_low 18 ALIGNMENT 937 Y12-6m11.q1k chr12 35 1264 209 1441 F 1230 93.25 1305 reject_low 12 ALIGNMENT 977 Y12-6m11.q1k chr14 35 1264 97 1332 F 1230 94.07 1305 reject_low 6 ALIGNMENT 964 Y12-6m11.q1k chr13 35 1264 187 1425 F 1230 93.74 1305 reject_low 10 ALIGNMENT 658 Y12-6m11.p1k chr16 1078 78 5253 6264 C 1001 90.21 1308 reject_low 5 ALIGNMENT 502 Y12-6m11.q1k chr06 618 1264 2 651 F 647 93.20 1305 reject_low 18 ALIGNMENT 658 Y12-6m11.p1k chr12 226 1078 1065528 1066367 F 853 94.14 1308 reject_low 13 ALIGNMENT 983 Y12-6m11.q1k chr05 1264 35 575559 576794 C 1230 94.23 1305 ambiguous_tel 2 ALIGNMENT 635 Y12-6m11.p1k chr05 970 226 5400 6138 C 745 96.38 1308 reject_low 15 ALIGNMENT 77 Y12-6m11.p1k chr12 78 200 1065407 1065529 F 123 87.80 1308 reject_low 13 ALIGNMENT 983 Y12-6m11.q1k chr16 1264 35 946736 947971 C 1230 94.23 1305 reject_low 9 ALIGNMENT 983 Y12-6m11.q1k chr16 35 1264 6 1241 F 1230 94.23 1305 reject_low 5 ALIGNMENT 1045 Y12-6m11.q1k chr09 35 1264 211 1444 F 1230 95.77 1305 ambiguous_tel 0 ALIGNMENT 657 Y12-6m11.p1k chr15 78 1078 1084877 1085883 F 1001 90.21 1308 reject_low 8 ALIGNMENT 0 Y12-6m11.p1k chr12 201 225 1065530 1065527 F 25 0.00 1308 reject_low 13 ALIGNMENT 978 Y12-6m12.p1k chr07 1144 16 215136 216260 C 1129 96.90 1258 accept 0 ALIGNMENT 980 Y12-6m12.q1k chr07 29 1170 210444 211599 F 1142 96.50 1312 accept 0 ALIGNMENT 801 Y12-6m13.p1k chr03 181 1198 9773 10787 F 1018 93.91 1253 reject_low 1 ALIGNMENT 807 Y12-6m13.p1k chr11 1198 181 658649 659663 C 1018 94.11 1253 accept 0 ALIGNMENT 942 Y12-6m13.q1k chr11 24 1140 655864 656974 F 1117 96.51 1297 accept 0 ALIGNMENT 28 Y12-6m14.p1k chr01 134 97 12320 12357 C 38 92.11 1241 reject_low 6 ALIGNMENT 0 Y12-6m14.p1k chr08 684 806 528612 528611 F 123 0.00 1241 reject_low 3 ALIGNMENT 28 Y12-6m14.p1k chr01 134 97 24773 24810 C 38 92.11 1241 reject_low 7 ALIGNMENT 0 Y12-6m14.p1k chr01 135 806 207229 207228 F 672 0.00 1241 reject_low 5 ALIGNMENT 534 Y12-6m14.p1k chr01 683 26 24008 24665 C 658 94.07 1241 reject_low 1 ALIGNMENT 0 Y12-6m14.p1k chr01 806 135 24774 24773 C 672 0.00 1241 reject_low 7 ALIGNMENT 403 Y12-6m14.p1k chr08 33 683 527990 528612 F 651 89.09 1241 reject_low 3 ALIGNMENT 74 Y12-6m14.p1k chr11 146 285 648977 649116 F 140 84.29 1241 reject_low 4 ALIGNMENT 0 Y12-6m14.p1k chr11 92 145 648977 648976 F 54 0.00 1241 reject_low 4 ALIGNMENT 937 Y12-6m14.p1k chr01 1211 26 11053 12233 C 1186 94.35 1241 accept 0 ALIGNMENT 0 Y12-6m14.p1k chr11 286 806 649116 649115 F 521 0.00 1241 reject_low 4 ALIGNMENT 0 Y12-6m14.p1k chr01 684 806 208000 207999 F 123 0.00 1241 reject_low 2 ALIGNMENT 0 Y12-6m14.p1k chr01 806 684 24009 24008 C 123 0.00 1241 reject_low 1 ALIGNMENT 30 Y12-6m14.p1k chr01 72 134 207168 207229 F 63 84.13 1241 reject_low 5 ALIGNMENT 1009 Y12-6m14.q1k chr01 34 1188 7466 8633 F 1155 96.80 1317 accept 0 ALIGNMENT 0 Y12-6m14.p1k chr01 806 135 12321 12320 C 672 0.00 1241 reject_low 6 ALIGNMENT 438 Y12-6m14.p1k chr01 26 683 207316 208000 F 658 89.36 1241 reject_low 2 ALIGNMENT 0 Y12-6m15.p1k chr13 92 728 908133 908132 F 637 0.00 1320 reject_low 13 ALIGNMENT 27 Y12-6m15.p1k chr13 590 634 908678 908722 F 45 86.67 1320 reject_low 21 ALIGNMENT 0 Y12-6m15.p1k chr13 92 589 908246 908245 F 498 0.00 1320 reject_low 4 ALIGNMENT 201 Y12-6m15.p1k chr13 585 962 908205 908582 F 378 84.66 1320 reject_low 5 ALIGNMENT 0 Y12-6m15.p1k chr13 92 589 908678 908677 F 498 0.00 1320 reject_low 21 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908601 908600 F 493 0.00 1320 reject_low 20 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908349 908348 F 493 0.00 1320 reject_low 12 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908421 908420 F 493 0.00 1320 reject_low 8 ALIGNMENT 0 Y12-6m15.p1k chr13 92 697 908138 908137 F 606 0.00 1320 reject_low 11 ALIGNMENT 0 Y12-6m15.p1k chr13 92 589 908498 908497 F 498 0.00 1320 reject_low 15 ALIGNMENT 267 Y12-6m15.p1k chr13 585 1049 908169 908632 F 465 86.24 1320 reject_low 1 ALIGNMENT 0 Y12-6m15.p1k chr13 92 841 908138 908137 F 750 0.00 1320 reject_low 16 ALIGNMENT 0 Y12-6m15.p1k chr13 92 661 908138 908137 F 570 0.00 1320 reject_low 2 ALIGNMENT 77 Y12-6m15.p1k chr13 585 742 908565 908722 F 158 82.91 1320 reject_low 18 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908313 908312 F 493 0.00 1320 reject_low 3 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908529 908528 F 493 0.00 1320 reject_low 17 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908457 908456 F 493 0.00 1320 reject_low 14 ALIGNMENT 0 Y12-6m15.p1k chr13 92 589 908282 908281 F 498 0.00 1320 reject_low 6 ALIGNMENT 155 Y12-6m15.p1k chr13 585 850 908457 908722 F 266 86.09 1320 reject_low 14 ALIGNMENT 173 Y12-6m15.p1k chr13 662 1035 908138 908510 F 374 82.62 1320 reject_low 2 ALIGNMENT 0 Y12-6m15.p1k chr13 707 834 908722 908721 F 128 0.00 1320 reject_low 20 ALIGNMENT 0 Y12-6m15.p1k chr13 92 620 908133 908132 F 529 0.00 1320 reject_low 9 ALIGNMENT 92 Y12-6m15.p1k chr13 585 778 908529 908722 F 194 82.47 1320 reject_low 17 ALIGNMENT 0 Y12-6m15.p1k chr13 743 834 908722 908721 F 92 0.00 1320 reject_low 18 ALIGNMENT 47 Y12-6m15.p1k chr13 585 706 908601 908722 F 122 79.51 1320 reject_low 20 ALIGNMENT 0 Y12-6m15.p1k chr13 635 834 908722 908721 F 200 0.00 1320 reject_low 21 ALIGNMENT 104 Y12-6m15.p1k chr13 729 1048 908133 908451 F 320 78.12 1320 reject_low 13 ALIGNMENT 65 Y12-6m15.p1k chr13 806 934 908138 908267 F 129 83.72 1320 reject_low 19 ALIGNMENT 0 Y12-6m15.p1k chr13 92 589 908390 908389 F 498 0.00 1320 reject_low 10 ALIGNMENT 716 Y12-6m15.p1k chr13 27 1035 907574 908582 F 1009 90.88 1320 accept 0 ALIGNMENT 60 Y12-6m15.p1k chr13 842 1048 908138 908343 F 207 77.29 1320 reject_low 16 ALIGNMENT 179 Y12-6m15.p1k chr13 585 886 908421 908722 F 302 86.42 1320 reject_low 8 ALIGNMENT 0 Y12-6m15.p1k chr13 779 834 908722 908721 F 56 0.00 1320 reject_low 17 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908565 908564 F 493 0.00 1320 reject_low 18 ALIGNMENT 197 Y12-6m15.p1k chr13 590 910 908282 908603 F 321 87.23 1320 reject_low 6 ALIGNMENT 174 Y12-6m15.p1k chr13 590 1035 908246 908690 F 446 80.04 1320 reject_low 4 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908169 908168 F 493 0.00 1320 reject_low 1 ALIGNMENT 160 Y12-6m15.p1k chr13 585 934 908349 908699 F 350 82.00 1320 reject_low 12 ALIGNMENT 0 Y12-6m15.p1k chr13 92 764 908133 908132 F 673 0.00 1320 reject_low 7 ALIGNMENT 165 Y12-6m15.p1k chr13 698 932 908138 908373 F 235 90.21 1320 reject_low 11 ALIGNMENT 127 Y12-6m15.p1k chr13 765 1035 908133 908402 F 271 83.03 1320 reject_low 7 ALIGNMENT 1072 Y12-6m15.q1k chr13 1197 34 911663 912834 C 1164 97.68 1288 accept 0 ALIGNMENT 0 Y12-6m15.p1k chr13 815 834 908722 908721 F 20 0.00 1320 reject_low 15 ALIGNMENT 172 Y12-6m15.p1k chr13 590 890 908390 908690 F 301 85.71 1320 reject_low 10 ALIGNMENT 114 Y12-6m15.p1k chr13 590 814 908498 908722 F 225 83.56 1320 reject_low 15 ALIGNMENT 0 Y12-6m15.p1k chr13 92 584 908205 908204 F 493 0.00 1320 reject_low 5 ALIGNMENT 220 Y12-6m15.p1k chr13 585 934 908313 908663 F 350 87.71 1320 reject_low 3 ALIGNMENT 165 Y12-6m15.p1k chr13 621 962 908133 908474 F 342 83.04 1320 reject_low 9 ALIGNMENT 0 Y12-6m15.p1k chr13 92 805 908138 908137 F 714 0.00 1320 reject_low 19 ALIGNMENT 961 Y12-6m16.p1k chr05 1176 22 317622 318792 C 1155 95.50 1301 accept 0 ALIGNMENT 1006 Y12-6m16.q1k chr05 25 1222 314985 316197 F 1198 95.08 1323 accept 0 ALIGNMENT 996 Y12-6m17.p1k chr09 33 1182 343441 344590 F 1150 96.26 1271 accept 0 ALIGNMENT 1001 Y12-6m17.q1k chr09 1130 28 347733 348837 C 1103 98.01 1268 accept 0 ALIGNMENT 862 Y12-6m18.p1k chr04 1190 54 625625 626745 C 1137 93.76 1282 accept 0 ALIGNMENT 1025 Y12-6m18.q1k chr04 29 1160 622659 623787 F 1132 97.97 1338 accept 0 ALIGNMENT 918 Y12-6m19.q1k chr11 1151 34 235383 236511 C 1118 95.35 1258 accept 0 ALIGNMENT 653 Y12-6m19.p1k chr11 255 1079 230327 231134 F 825 94.79 1287 accept 0 ALIGNMENT 464 Y12-6m20.p1k chr12 22 884 1034660 1035523 F 863 85.05 1289 reject_low 1 ALIGNMENT 0 Y12-6m20.q1k chr12 780 62 1035524 1035523 C 719 0.00 1303 reject_low 1 ALIGNMENT 917 Y12-6m20.p1k chr13 1045 26 115837 116844 C 1020 97.75 1289 accept 0 ALIGNMENT 127 Y12-6m20.q1k chr12 1144 781 1035155 1035523 C 364 78.02 1303 reject_low 1 ALIGNMENT 1032 Y12-6m20.q1k chr13 34 1182 115239 116398 F 1149 97.13 1303 accept 0 ALIGNMENT 21 Y12-6m21.q1k chr05 527 479 83163 83211 C 49 93.88 1246 reject_low 6 ALIGNMENT 742 Y12-6m21.p1k chr11 150 1016 116096 116958 F 867 95.96 1236 accept_chi 1 ALIGNMENT 24 Y12-6m21.q1k chr13 527 479 588610 588658 C 49 95.92 1246 reject_low 3 ALIGNMENT 0 Y12-6m21.q1k chr02 528 901 780404 780403 F 374 0.00 1246 reject_low 2 ALIGNMENT 0 Y12-6m21.q1k chr05 901 528 83164 83163 C 374 0.00 1246 reject_low 6 ALIGNMENT 0 Y12-6m21.q1k chr08 526 901 48256 48255 F 376 0.00 1246 reject_low 8 ALIGNMENT 24 Y12-6m21.q1k chr02 478 527 780355 780404 F 50 94.00 1246 reject_low 2 ALIGNMENT 0 Y12-6m21.q1k chr09 478 62 169507 169506 C 417 0.00 1246 reject_low 7 ALIGNMENT 0 Y12-6m21.q1k chr08 62 481 48214 48213 F 420 0.00 1246 reject_low 8 ALIGNMENT 0 Y12-6m21.q1k chr02 528 901 72396 72395 F 374 0.00 1246 reject_low 5 ALIGNMENT 21 Y12-6m21.q1k chr09 527 479 169458 169506 C 49 93.88 1246 reject_low 7 ALIGNMENT 0 Y12-6m21.q1k chr09 901 528 169459 169458 C 374 0.00 1246 reject_low 7 ALIGNMENT 0 Y12-6m21.q1k chr13 901 528 588611 588610 C 374 0.00 1246 reject_low 3 ALIGNMENT 20 Y12-6m21.q1k chr08 482 525 48214 48256 F 44 95.45 1246 reject_low 8 ALIGNMENT 0 Y12-6m21.q1k chr04 528 901 654370 654369 F 374 0.00 1246 reject_low 4 ALIGNMENT 24 Y12-6m21.q1k chr04 491 527 654334 654370 F 37 100.00 1246 reject_low 4 ALIGNMENT 0 Y12-6m21.q1k chr05 478 62 83212 83211 C 417 0.00 1246 reject_low 6 ALIGNMENT 1010 Y12-6m21.q1k chr16 1239 35 184644 185864 C 1205 95.93 1246 accept_chi 0 ALIGNMENT 0 Y12-6m21.q1k chr02 62 477 780355 780354 F 416 0.00 1246 reject_low 2 ALIGNMENT 0 Y12-6m21.q1k chr13 478 62 588659 588658 C 417 0.00 1246 reject_low 3 ALIGNMENT 0 Y12-6m21.q1k chr02 62 478 72348 72347 F 417 0.00 1246 reject_low 5 ALIGNMENT 21 Y12-6m21.q1k chr02 479 527 72348 72396 F 49 93.88 1246 reject_low 5 ALIGNMENT 0 Y12-6m21.q1k chr04 62 490 654334 654333 F 429 0.00 1246 reject_low 4 ALIGNMENT 892 Y12-6m22.p1k chr12 44 1037 462843 463827 F 994 97.48 1231 accept 1 ALIGNMENT 1035 Y12-6m22.q1k chr12 1187 32 456502 457649 C 1156 97.32 1305 accept 0 ALIGNMENT 1035 Y12-6m22.q1k chr12 1187 32 465639 466786 C 1156 97.32 1305 accept 1 ALIGNMENT 892 Y12-6m22.p1k chr12 44 1037 453706 454690 F 994 97.48 1231 accept 0 ALIGNMENT 982 Y12-6m23.q1k chr12 1194 37 927890 929049 C 1158 96.72 1229 accept 0 ALIGNMENT 779 Y12-6m23.p1k chr12 220 1187 925002 925963 F 968 95.14 1199 accept 0 ALIGNMENT 939 Y12-6m24.p1k chr11 25 1126 659025 660127 F 1102 95.83 1181 ambiguous_tel 1 ALIGNMENT 939 Y12-6m24.p1k chr03 1126 25 9309 10411 C 1102 95.83 1181 ambiguous_tel 0 ALIGNMENT 751 Y12-6m24.q1k chr11 1005 38 662952 663899 C 968 94.63 1304 ambiguous_tel 1 ALIGNMENT 766 Y12-6m24.q1k chr03 31 1004 5470 6454 F 974 94.25 1304 ambiguous_tel 0 ALIGNMENT 917 Y12-6n01.p1k chr13 144 1248 324383 325495 F 1105 95.20 1290 accept 0 ALIGNMENT 1038 Y12-6n01.q1k chr13 1216 32 328170 329360 C 1185 97.13 1333 accept 0 ALIGNMENT 965 Y12-6n02.p1k chr02 1272 19 313038 314283 C 1254 94.26 1287 accept 0 ALIGNMENT 936 Y12-6n03.p1k chr09 55 1208 139657 140822 F 1154 94.97 1293 accept 0 ALIGNMENT 1024 Y12-6n03.q1k chr09 1249 32 142514 143744 C 1218 95.57 1345 accept 0 ALIGNMENT 676 Y12-6n04.p1k chr12 816 8 464441 465251 C 809 95.30 1193 accept 1 ALIGNMENT 511 Y12-6n04.q1k chr12 30 548 490025 490543 F 519 99.61 1298 reject_low 2 ALIGNMENT 676 Y12-6n04.p1k chr12 816 8 455304 456114 C 809 95.30 1193 accept 0 ALIGNMENT 923 Y12-6n04.q1k chr12 30 1093 461194 462269 F 1064 96.24 1298 accept 1 ALIGNMENT 0 Y12-6n04.q1k chr12 549 811 490543 490542 F 263 0.00 1298 reject_low 2 ALIGNMENT 923 Y12-6n04.q1k chr12 30 1093 452057 453132 F 1064 96.24 1298 accept 0 ALIGNMENT 1079 Y12-6n05.q1k chr12 33 1307 69937 71225 F 1275 96.08 1397 accept 0 ALIGNMENT 848 Y12-6n05.p1k chr12 1142 35 73277 74377 C 1108 93.41 1279 accept 0 ALIGNMENT 714 Y12-6n06.p1k chr12 1117 121 722940 723929 C 997 91.57 1302 accept 0 ALIGNMENT 819 Y12-6n07.q1k chr16 1059 30 535875 536942 C 1030 95.05 1395 accept 0 ALIGNMENT 701 Y12-6n07.p1k chr16 151 1096 533274 534222 F 946 92.39 1279 accept 0 ALIGNMENT 1009 Y12-6n09.p1k chr03 1212 29 72742 73912 C 1184 96.28 1289 accept 0 ALIGNMENT 958 Y12-6n09.q1k chr03 27 1153 68007 69136 F 1127 95.74 1344 accept 0 ALIGNMENT 0 Y12-6n10.p1k chr07 264 823 1076135 1076134 F 560 0.00 1330 accept 0 ALIGNMENT 214 Y12-6n10.p1k chr07 26 263 1075899 1076135 F 238 97.48 1330 accept 0 ALIGNMENT 935 Y12-6n11.q1k chr12 32 1139 848702 849789 F 1108 96.93 1404 accept 0 ALIGNMENT 1006 Y12-6n11.p1k chr12 1265 17 851841 853068 C 1249 95.92 1266 accept 0 ALIGNMENT 979 Y12-6n13.p1k chr05 21 1230 230513 231712 F 1210 95.45 1275 accept 0 ALIGNMENT 934 Y12-6n13.q1k chr05 1121 28 233031 234112 C 1094 96.80 1370 accept 0 ALIGNMENT 835 Y12-6n14.p1k chr02 1075 33 323190 324226 C 1043 94.15 1276 accept 0 ALIGNMENT 782 Y12-6n15.p1k chr12 24 1244 459808 461048 F 1221 90.42 1337 accept 0 ALIGNMENT 0 Y12-6n15.p1k chr12 62 734 451419 451418 F 673 0.00 1337 reject_low 1 ALIGNMENT 246 Y12-6n15.p1k chr12 735 1244 451419 451911 F 510 86.08 1337 reject_low 1 ALIGNMENT 1000 Y12-6n15.q1k chr12 1143 32 463256 464381 C 1112 97.30 1319 accept 0 ALIGNMENT 1000 Y12-6n15.q1k chr12 1143 32 454119 455244 C 1112 97.30 1319 reject_low 1 ALIGNMENT 1007 Y12-6n16.q1k chr07 1214 34 212190 213362 C 1181 96.44 1512 accept 0 ALIGNMENT 887 Y12-6n16.p1k chr07 23 1191 208212 209384 F 1169 94.01 1272 accept 0 ALIGNMENT 786 Y12-6n17.p1k chr02 29 1183 60293 61424 F 1155 91.26 1262 accept 0 ALIGNMENT 905 Y12-6n17.q1k chr02 1130 38 63490 64610 C 1093 95.88 1273 accept 0 ALIGNMENT 809 Y12-6n18.p1k chr04 117 1230 557752 558864 F 1114 92.37 1235 accept 0 ALIGNMENT 568 Y12-6n22.p1k chr04 1077 381 8483 9182 C 697 94.26 1272 ambiguous_tel 0 ALIGNMENT 568 Y12-6n22.p1k chr10 381 1077 736533 737232 F 697 94.26 1272 ambiguous_tel 1 ALIGNMENT 977 Y12-6n24.q1k chr04 1208 37 709310 710496 C 1172 95.48 1214 accept 0 ALIGNMENT 773 Y12-6n24.p1k chr04 271 1178 706672 707571 F 908 96.15 1244 accept 0 ALIGNMENT 1046 Y12-6o01.q1k chr02 1281 25 204044 205296 C 1257 95.39 1328 accept 0 ALIGNMENT 744 Y12-6o01.p1k chr02 258 1149 201622 202500 F 892 95.63 1201 accept 0 ALIGNMENT 524 Y12-6o02.p1k chr04 57 634 137292 137867 F 578 98.44 1310 accept 0 ALIGNMENT 282 Y12-6o02.p1k chr04 560 976 137862 138262 F 417 92.33 1310 reject_low 1 ALIGNMENT 1044 Y12-6o02.q1k chr04 1273 27 140074 141325 C 1247 95.51 1377 accept 0 ALIGNMENT 0 Y12-6o02.p1k chr04 635 711 137867 137866 F 77 0.00 1310 accept 0 ALIGNMENT 0 Y12-6o02.p1k chr04 218 559 137862 137861 F 342 0.00 1310 reject_low 1 ALIGNMENT 336 Y12-6o03.q1k chr16 254 625 436887 437258 F 372 98.12 1308 reject_low 2 ALIGNMENT 0 Y12-6o03.q1k chr09 625 774 197020 197019 F 150 0.00 1308 reject_low 4 ALIGNMENT 0 Y12-6o03.q1k chr04 253 62 437516 437515 C 192 0.00 1308 reject_low 11 ALIGNMENT 0 Y12-6o03.q1k chr08 774 625 85536 85535 C 150 0.00 1308 reject_low 16 ALIGNMENT 0 Y12-6o03.q1k chr09 62 253 196650 196649 F 192 0.00 1308 reject_low 4 ALIGNMENT 114 Y12-6o03.q1k chr08 253 117 91815 91952 C 137 97.08 1308|1,0 reject_low 13,16 ALIGNMENT 0 Y12-6o03.q1k chr15 774 672 704075 704074 C 103 0.00 1308 reject_low 24 ALIGNMENT 0 Y12-6o03.q1k chr16 62 253 442739 442738 F 192 0.00 1308 reject_low 6 ALIGNMENT 28 Y12-6o03.q1k chr14 136 90 561500 561545 C 47 91.49 1308 reject_low 30 ALIGNMENT 113 Y12-6o03.q1k chr10 253 121 203756 203888 C 133 96.99 1308 reject_low 14,15 ALIGNMENT 38 Y12-6o03.q1k chr14 672 625 562043 562090 C 48 95.83 1308 reject_low 21 ALIGNMENT 0 Y12-6o03.q1k chr14 62 240 632108 632107 F 179 0.00 1308 reject_low 9 ALIGNMENT 0 Y12-6o03.q1k chr10 624 62 203761 203760 C 563 0.00 1308 reject_low 19 ALIGNMENT 0 Y12-6o03.q1k chr14 624 62 562091 562090 C 563 0.00 1308 reject_low 21 ALIGNMENT 0 Y12-6o03.q1k chr08 253 254 85906 91814 C 0 0.00 1308 reject_low 16 ALIGNMENT 0 Y12-6o03.q1k chr05 62 249 354352 354351 F 188 0.00 1308 reject_low 7 ALIGNMENT 335 Y12-6o03.q1k chr13 624 254 503770 504140 C 371 98.11 1308 reject_low 5 ALIGNMENT 0 Y12-6o03.q1k chr08 774 672 91774 91773 C 103 0.00 1308 reject_low 25 ALIGNMENT 178 Y12-6o03.q1k chr09 34 253 246277 246497 F 220 95.45 1308 reject_low 28 ALIGNMENT 38 Y12-6o03.q1k chr06 625 672 143810 143857 F 48 95.83 1308 reject_low 23 ALIGNMENT 335 Y12-6o03.q1k chr16 254 624 442739 443109 F 371 98.11 1308 reject_low 6 ALIGNMENT 31 Y12-6o03.q1k chr09 625 671 246493 246539 F 47 91.49 1308 reject_low 28 ALIGNMENT 0 Y12-6o03.q1k chr14 625 774 632491 632490 F 150 0.00 1308 reject_low 9 ALIGNMENT 310 Y12-6o03.q1k chr04 625 254 437145 437515 C 372 95.97 1308 reject_low 11 ALIGNMENT 0 Y12-6o03.q1k chr10 673 774 538339 538338 F 102 0.00 1308 reject_low 20 ALIGNMENT 0 Y12-6o03.q1k chr08 774 626 91387 91386 C 149 0.00 1308 reject_low 13 ALIGNMENT 75 Y12-6o03.q1k chr05 124 34 449166 449256 C 91 95.60 1308 reject_low 18 ALIGNMENT 0 Y12-6o03.q1k chr15 624 62 704121 704120 C 563 0.00 1308 reject_low 24 ALIGNMENT 0 Y12-6o03.q1k chr10 120 62 203889 203888 C 59 0.00 1308 reject_low 14,15 ALIGNMENT 185 Y12-6o03.q1k chr06 34 253 137968 138187 F 220 96.36 1308 reject_low 22 ALIGNMENT 0 Y12-6o03.q1k chr06 673 774 143857 143856 F 102 0.00 1308 reject_low 23 ALIGNMENT 0 Y12-6o03.q1k chr10 774 626 197464 197463 C 149 0.00 1308 reject_low 14 ALIGNMENT 0 Y12-6o03.q1k chr06 254 624 143815 143809 F 371 0.00 1308 reject_low 23 ALIGNMENT 0 Y12-6o03.q1k chr05 252 774 354792 354791 F 523 0.00 1308 reject_low 32 ALIGNMENT 0 Y12-6o03.q1k chr04 774 626 437146 437145 C 149 0.00 1308 reject_low 11 ALIGNMENT 0 Y12-6o03.q1k chr07 62 244 931164 931163 F 183 0.00 1308 reject_low 12 ALIGNMENT 324 Y12-6o03.q1k chr05 250 628 354352 354730 F 379 96.57 1308 reject_low 7 ALIGNMENT 0 Y12-6o03.q1k chr06 673 774 138230 138229 F 102 0.00 1308 reject_low 22 ALIGNMENT 31 Y12-6o03.q1k chr06 73 233 137750 137899 F 161 78.26 1308 reject_low 29 ALIGNMENT 335 Y12-6o03.q1k chr09 254 624 196650 197020 F 371 98.11 1308 reject_low 4 ALIGNMENT 0 Y12-6o03.q1k chr05 673 774 449617 449616 F 102 0.00 1308 reject_low 26 ALIGNMENT 0 Y12-6o03.q1k chr14 774 625 561609 561608 C 150 0.00 1308 reject_low 17 ALIGNMENT 0 Y12-6o03.q1k chr14 774 673 562044 562043 C 102 0.00 1308 reject_low 21 ALIGNMENT 185 Y12-6o03.q1k chr06 34 253 143595 143814 F 220 96.36 1308 reject_low 23 ALIGNMENT 0 Y12-6o03.q1k chr05 252 629 449573 449574 F 378 0.00 1308 reject_low 26 ALIGNMENT 0 Y12-6o03.q1k chr08 252 253 91759 91815 C 0 0.00 1308 reject_low 13 ALIGNMENT 0 Y12-6o03.q1k chr14 197 62 632110 632109 C 136 0.00 1308 reject_low 31 ALIGNMENT 0 Y12-6o03.q1k chr14 89 62 561546 561545 C 28 0.00 1308 reject_low 30 ALIGNMENT 0 Y12-6o03.q1k chr09 672 774 246539 246538 F 103 0.00 1308 reject_low 28 ALIGNMENT 185 Y12-6o03.q1k chr10 34 253 538077 538296 F 220 96.36 1308 reject_low 20 ALIGNMENT 0 Y12-6o03.q1k chr14 774 137 561501 561500 C 638 0.00 1308 reject_low 30 ALIGNMENT 0 Y12-6o03.q1k chr09 254 624 246498 246492 F 371 0.00 1308 reject_low 28 ALIGNMENT 186 Y12-6o03.q1k chr05 34 251 449355 449572 F 218 96.79 1308 reject_low 26 ALIGNMENT 0 Y12-6o03.q1k chr10 774 626 203319 203318 C 149 0.00 1308 reject_low 15 ALIGNMENT 0 Y12-6o03.q1k chr05 774 125 449167 449166 C 650 0.00 1308 reject_low 18 ALIGNMENT 41 Y12-6o03.q1k chr10 625 672 538292 538339 F 48 97.92 1308 reject_low 20 ALIGNMENT 337 Y12-6o03.q1k chr15 624 34 703773 704336 C 591 89.34 1308 reject_low 1 ALIGNMENT 0 Y12-6o03.q1k chr14 774 252 632056 632055 C 523 0.00 1308 reject_low 31 ALIGNMENT 0 Y12-6o03.q1k chr09 774 252 197192 197191 C 523 0.00 1308 reject_low 27 ALIGNMENT 0 Y12-6o03.q1k chr05 629 774 354730 354729 F 146 0.00 1308 reject_low 7 ALIGNMENT 0 Y12-6o03.q1k chr13 253 62 504141 504140 C 192 0.00 1308 reject_low 5 ALIGNMENT 31 Y12-6o03.q1k chr15 671 625 704074 704120 C 47 91.49 1308 reject_low 24 ALIGNMENT 0 Y12-6o03.q1k chr16 626 774 437258 437257 F 149 0.00 1308 reject_low 2 ALIGNMENT 22 Y12-6o03.q1k chr05 190 251 354733 354792 F 62 83.87 1308 reject_low 32 ALIGNMENT 0 Y12-6o03.q1k chr02 62 253 643483 643482 F 192 0.00 1308 reject_low 8 ALIGNMENT 307 Y12-6o03.q1k chr07 245 624 931164 931543 F 380 95.26 1308 reject_low 12 ALIGNMENT 32 Y12-6o03.q1k chr09 251 34 197191 197425 C 218 74.77 1308 reject_low 27 ALIGNMENT 0 Y12-6o03.q1k chr13 774 625 503771 503770 C 150 0.00 1308 reject_low 5 ALIGNMENT 0 Y12-6o03.q1k chr02 627 774 643855 643854 F 148 0.00 1308 reject_low 8 ALIGNMENT 22 Y12-6o03.q1k chr15 212 251 703668 703708 F 40 87.50 1308 reject_low 33 ALIGNMENT 0 Y12-6o03.q1k chr06 234 774 137899 137898 F 541 0.00 1308 reject_low 29 ALIGNMENT 335 Y12-6o03.q1k chr14 624 254 561608 561978 C 371 98.11 1308 reject_low 17 ALIGNMENT 0 Y12-6o03.q1k chr08 116 62 91953 91952 C 55 0.00 1308 reject_low 13,16 ALIGNMENT 335 Y12-6o03.q1k chr02 254 624 35848 36218 F 371 98.11 1308 reject_low 3 ALIGNMENT 0 Y12-6o03.q1k chr10 253 254 203690 203755 C 0 0.00 1308 reject_low 15 ALIGNMENT 28 Y12-6o03.q1k chr08 671 625 91773 91819 C 47 89.36 1308 reject_low 25 ALIGNMENT 0 Y12-6o03.q1k chr02 62 253 35848 35847 F 192 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-6o03.q1k chr08 624 62 91820 91819 C 563 0.00 1308 reject_low 25 ALIGNMENT 957 Y12-6o03.q1k chr07 1168 32 110323 111451 C 1137 96.39 1308 accept 0 ALIGNMENT 0 Y12-6o03.q1k chr13 627 774 808907 808906 F 148 0.00 1308 reject_low 10 ALIGNMENT 34 Y12-6o03.q1k chr10 681 625 203704 203760 C 57 89.47 1308 reject_low 19 ALIGNMENT 75 Y12-6o03.q1k chr14 253 167 562086 562172 C 87 96.55 1308 reject_low 17 ALIGNMENT 338 Y12-6o03.q1k chr08 625 252 91386 91759 C 374 98.13 1308|0,1 reject_low 13 ALIGNMENT 0 Y12-6o03.q1k chr10 253 254 197835 203755 C 0 0.00 1308 reject_low 14 ALIGNMENT 325 Y12-6o03.q1k chr02 254 626 643483 643855 F 373 97.05 1308 reject_low 8 ALIGNMENT 0 Y12-6o03.q1k chr15 62 211 703668 703667 F 150 0.00 1308 reject_low 33 ALIGNMENT 0 Y12-6o03.q1k chr05 62 189 354733 354732 F 128 0.00 1308 reject_low 32 ALIGNMENT 642 Y12-6o03.p1k chr07 316 1233 107153 108056 F 918 92.37 1273 accept 0 ALIGNMENT 0 Y12-6o03.q1k chr16 62 253 436887 436886 F 192 0.00 1308 reject_low 2 ALIGNMENT 0 Y12-6o03.q1k chr14 166 62 562173 562172 C 105 0.00 1308 reject_low 17 ALIGNMENT 326 Y12-6o03.q1k chr14 241 624 632108 632491 F 384 96.35 1308 reject_low 9 ALIGNMENT 0 Y12-6o03.q1k chr07 625 774 931543 931542 F 150 0.00 1308 reject_low 12 ALIGNMENT 0 Y12-6o03.q1k chr15 252 774 703708 703707 F 523 0.00 1308 reject_low 33 ALIGNMENT 0 Y12-6o03.q1k chr10 254 624 538297 538291 F 371 0.00 1308 reject_low 20 ALIGNMENT 336 Y12-6o03.q1k chr10 625 254 203318 203689 C 372 98.12 1308 reject_low 15 ALIGNMENT 36 Y12-6o03.q1k chr14 251 198 632055 632109 C 54 90.74 1308 reject_low 31 ALIGNMENT 0 Y12-6o03.q1k chr13 62 253 808536 808535 F 192 0.00 1308 reject_low 10 ALIGNMENT 0 Y12-6o03.q1k chr14 253 254 561979 562085 C 0 0.00 1308 reject_low 17 ALIGNMENT 27 Y12-6o03.q1k chr05 630 672 449575 449617 F 43 90.70 1308 reject_low 26 ALIGNMENT 38 Y12-6o03.q1k chr06 625 672 138183 138230 F 48 95.83 1308 reject_low 22 ALIGNMENT 326 Y12-6o03.q1k chr08 624 254 85535 85905 C 371 97.30 1308 reject_low 16 ALIGNMENT 0 Y12-6o03.q1k chr10 774 682 203705 203704 C 93 0.00 1308 reject_low 19 ALIGNMENT 0 Y12-6o03.q1k chr06 254 624 138188 138182 F 371 0.00 1308 reject_low 22 ALIGNMENT 0 Y12-6o03.q1k chr16 625 774 443109 443108 F 150 0.00 1308 reject_low 6 ALIGNMENT 0 Y12-6o03.q1k chr02 625 774 36218 36217 F 150 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-6o03.q1k chr15 774 625 703774 703773 C 150 0.00 1308 reject_low 1 ALIGNMENT 336 Y12-6o03.q1k chr10 625 254 197463 197834 C 372 98.12 1308 reject_low 14 ALIGNMENT 320 Y12-6o03.q1k chr13 254 626 808536 808907 F 373 96.78 1308 reject_low 10 ALIGNMENT 610 Y12-6o04.q1k chr07 808 11 520725 521513 C 798 93.48 1216 accept 0 ALIGNMENT 631 Y12-6o04.p1k chr07 314 1063 517067 517809 F 750 95.87 1297 accept 0 ALIGNMENT 592 Y12-6o05.p1k chr07 283 1047 440014 440780 F 765 94.77 1265 accept 0 ALIGNMENT 294 Y12-6o05.q1k chr07 772 38 443155 443887 C 735 81.22 1362 accept 0 ALIGNMENT 322 Y12-6o07.p1k chr04 359 906 461293 461842 F 548 86.50 1244 accept 0 ALIGNMENT 838 Y12-6o07.q1k chr04 1266 190 465315 466384 C 1077 93.69 1299 accept 0 ALIGNMENT 1001 Y12-6o09.p1k chr16 16 1195 494288 495450 F 1180 96.44 1268 accept 0 ALIGNMENT 1047 Y12-6o09.q1k chr16 1217 29 498466 499679 C 1189 97.14 1267 accept 0 ALIGNMENT 0 Y12-6o10.q1k chr06 429 873 267206 267205 F 445 0.00 1332 ambiguous_tel 1 ALIGNMENT 250 Y12-6o10.q1k chr06 31 428 266809 267206 F 398 88.94 1332 ambiguous_tel 1 ALIGNMENT 926 Y12-6o10.p1k chr14 25 1123 61857 62951 F 1099 96.27 1257 accept 0 ALIGNMENT 0 Y12-6o10.p1k chr15 543 798 92441 92440 F 256 0.00 1257 reject_low 2 ALIGNMENT 0 Y12-6o10.p1k chr15 62 125 92025 92024 F 64 0.00 1257 reject_low 2 ALIGNMENT 353 Y12-6o10.p1k chr15 126 542 92025 92441 F 417 95.20 1257 reject_low 2 ALIGNMENT 887 Y12-6o12.q1k chr05 12 1099 463563 464640 F 1088 94.94 1342 accept 0 ALIGNMENT 940 Y12-6o12.p1k chr05 1109 13 466693 467782 C 1097 96.81 1246 accept 0 ALIGNMENT 993 Y12-6o13.q1k chr12 1147 36 455489 456589 C 1112 97.48 1308 accept 0 ALIGNMENT 972 Y12-6o13.p1k chr12 13 1126 452599 453698 F 1114 96.86 1263 accept 0 ALIGNMENT 993 Y12-6o13.q1k chr12 1147 36 464626 465726 C 1112 97.48 1308 accept 1 ALIGNMENT 972 Y12-6o13.p1k chr12 13 1126 461736 462835 F 1114 96.86 1263 accept 1 ALIGNMENT 767 Y12-6o14.p1k chr11 7 1028 563587 564597 F 1022 94.13 1158 accept 0 ALIGNMENT 1060 Y12-6o14.q1k chr11 1278 30 565987 567236 C 1249 95.60 1336 accept 0 ALIGNMENT 1044 Y12-6o15.q1k chr05 33 1282 19830 21067 F 1250 95.28 1301 accept 0 ALIGNMENT 1017 Y12-6o15.q1k chr14 1282 33 774822 776059 C 1250 94.72 1301 reject_low 1 ALIGNMENT 587 Y12-6o15.p1k chr05 985 122 23875 24725 C 864 90.86 1288 accept 0 ALIGNMENT 630 Y12-6o16.p1k chr07 869 20 70769 71605 C 850 93.06 1313 accept 0 ALIGNMENT 1022 Y12-6o16.q1k chr07 30 1245 66943 68169 F 1216 95.97 1341 accept 0 ALIGNMENT 0 Y12-6o17.q1k chr04 316 512 17315 17595 F 197 0.00 1302 reject_low 3 ALIGNMENT 935 Y12-6o17.p1k chr10 12 1159 272691 273820 F 1148 95.99 1281 accept 0 ALIGNMENT 0 Y12-6o17.q1k chr15 62 590 1717 1716 F 529 0.00 1302 reject_low 6 ALIGNMENT 0 Y12-6o17.q1k chr03 590 62 314908 314907 C 529 0.00 1302 reject_low 5 ALIGNMENT 0 Y12-6o17.q1k chr10 501 397 728177 728319 C 105 0.00 1302 reject_low 2 ALIGNMENT 232 Y12-6o17.q1k chr06 27 315 13750 14039 F 289 94.12 1302 reject_low 4 ALIGNMENT 240 Y12-6o17.q1k chr03 1087 591 314417 314907 C 497 84.10 1302 reject_low 5 ALIGNMENT 217 Y12-6o17.q1k chr04 27 315 17025 17314 F 289 92.39 1302 reject_low 3 ALIGNMENT 0 Y12-6o17.q1k chr06 316 512 14040 14323 F 197 0.00 1302 reject_low 4 ALIGNMENT 318 Y12-6o17.q1k chr04 513 1129 17596 18202 F 617 85.41 1302 reject_low 3 ALIGNMENT 192 Y12-6o17.q1k chr15 591 996 1717 2120 F 406 83.50 1302 reject_low 6 ALIGNMENT 986 Y12-6o17.q1k chr14 27 1129 15653 16746 F 1103 97.73 1302 ambiguous_tel 1 ALIGNMENT 327 Y12-6o17.q1k chr10 396 27 728320 728690 C 370 97.03 1302 reject_low 2 ALIGNMENT 298 Y12-6o17.q1k chr06 513 1066 14324 14873 F 554 85.56 1302 reject_low 4 ALIGNMENT 290 Y12-6o17.q1k chr10 1066 502 727615 728176 C 565 84.78 1302 reject_low 2 ALIGNMENT 0 Y12-6o18.q1k chr11 879 677 512968 512967 C 203 0.00 1375 reject_low 8 ALIGNMENT 74 Y12-6o18.q1k chr12 598 675 793918 793995 F 78 98.72 1375 reject_low 14 ALIGNMENT 0 Y12-6o18.q1k chr07 678 879 531693 531692 F 202 0.00 1375 reject_low 7 ALIGNMENT 67 Y12-6o18.q1k chr14 676 606 519093 519163 C 71 98.59 1375 reject_low 16 ALIGNMENT 896 Y12-6o18.q1k chr07 1124 26 544141 545225 C 1099 96.09 1375 accept_trans 0 ALIGNMENT 0 Y12-6o18.q1k chr09 879 678 324294 324293 C 202 0.00 1375 reject_low 6 ALIGNMENT 0 Y12-6o18.q1k chr10 678 879 204731 204730 F 202 0.00 1375 reject_low 10 ALIGNMENT 0 Y12-6o18.q1k chr09 597 62 336418 336417 C 536 0.00 1375 reject_low 9 ALIGNMENT 544 Y12-6o18.p1k chr07 224 960 533811 534536 F 737 93.35 1392 accept_trans 0 ALIGNMENT 0 Y12-6o18.q1k chr10 62 597 204652 204651 F 536 0.00 1375 reject_low 10 ALIGNMENT 0 Y12-6o18.q1k chr12 678 879 427212 427211 F 202 0.00 1375 reject_low 15 ALIGNMENT 0 Y12-6o18.q1k chr07 62 595 531612 531611 F 534 0.00 1375 reject_low 7 ALIGNMENT 0 Y12-6o18.q1k chr10 678 879 355451 355450 F 202 0.00 1375 reject_low 3 ALIGNMENT 79 Y12-6o18.q1k chr02 593 677 405949 406033 F 85 98.82 1375 reject_low 2 ALIGNMENT 0 Y12-6o18.q1k chr14 605 62 519164 519163 C 544 0.00 1375 reject_low 16 ALIGNMENT 75 Y12-6o18.q1k chr10 598 677 541422 541501 F 80 98.75 1375 reject_low 11 ALIGNMENT 0 Y12-6o18.q1k chr10 879 678 374333 374332 C 202 0.00 1375 reject_low 4 ALIGNMENT 0 Y12-6o18.q1k chr15 62 597 571958 571957 F 536 0.00 1375 reject_low 13 ALIGNMENT 0 Y12-6o18.q1k chr13 678 879 463632 463631 F 202 0.00 1375 reject_low 12 ALIGNMENT 0 Y12-6o18.p1k chr12 302 548 795572 795571 F 247 0.00 1392 reject_low 1 ALIGNMENT 76 Y12-6o18.q1k chr04 593 677 568956 569040 F 85 97.65 1375 reject_low 5 ALIGNMENT 75 Y12-6o18.q1k chr15 598 677 571958 572037 F 80 98.75 1375 reject_low 13 ALIGNMENT 0 Y12-6o18.q1k chr10 62 597 541422 541421 F 536 0.00 1375 reject_low 11 ALIGNMENT 76 Y12-6o18.q1k chr09 677 597 324293 324373 C 81 98.77 1375 reject_low 6 ALIGNMENT 0 Y12-6o18.q1k chr14 879 677 519094 519093 C 203 0.00 1375 reject_low 16 ALIGNMENT 0 Y12-6o18.q1k chr11 596 62 513047 513046 C 535 0.00 1375 reject_low 8 ALIGNMENT 0 Y12-6o18.q1k chr10 678 879 541501 541500 F 202 0.00 1375 reject_low 11 ALIGNMENT 75 Y12-6o18.q1k chr13 598 677 463553 463632 F 80 98.75 1375 reject_low 12 ALIGNMENT 0 Y12-6o18.q1k chr12 62 597 427133 427132 F 536 0.00 1375 reject_low 15 ALIGNMENT 79 Y12-6o18.q1k chr10 677 593 374332 374416 C 85 98.82 1375 reject_low 4 ALIGNMENT 202 Y12-6o18.p1k chr12 549 886 795572 795907 F 338 87.87 1392 reject_low 1 ALIGNMENT 75 Y12-6o18.q1k chr09 677 598 336338 336417 C 80 98.75 1375 reject_low 9 ALIGNMENT 0 Y12-6o18.q1k chr09 596 62 324374 324373 C 535 0.00 1375 reject_low 6 ALIGNMENT 0 Y12-6o18.q1k chr09 879 678 336339 336338 C 202 0.00 1375 reject_low 9 ALIGNMENT 72 Y12-6o18.q1k chr12 598 677 427133 427212 F 80 97.50 1375 reject_low 15 ALIGNMENT 74 Y12-6o18.q1k chr07 596 677 531612 531693 F 82 97.56 1375 reject_low 7 ALIGNMENT 0 Y12-6o18.q1k chr02 62 592 405949 405948 F 531 0.00 1375 reject_low 2 ALIGNMENT 0 Y12-6o18.q1k chr12 676 879 793995 793994 F 204 0.00 1375 reject_low 14 ALIGNMENT 0 Y12-6o18.q1k chr12 62 597 793918 793917 F 536 0.00 1375 reject_low 14 ALIGNMENT 0 Y12-6o18.q1k chr02 678 879 406033 406032 F 202 0.00 1375 reject_low 2 ALIGNMENT 0 Y12-6o18.q1k chr13 62 597 463553 463552 F 536 0.00 1375 reject_low 12 ALIGNMENT 75 Y12-6o18.q1k chr10 598 677 204652 204731 F 80 98.75 1375 reject_low 10 ALIGNMENT 0 Y12-6o18.q1k chr10 62 592 355367 355366 F 531 0.00 1375 reject_low 3 ALIGNMENT 0 Y12-6o18.q1k chr10 592 62 374417 374416 C 531 0.00 1375 reject_low 4 ALIGNMENT 75 Y12-6o18.q1k chr11 676 597 512967 513046 C 80 98.75 1375 reject_low 8 ALIGNMENT 79 Y12-6o18.q1k chr10 593 677 355367 355451 F 85 98.82 1375 reject_low 3 ALIGNMENT 0 Y12-6o18.q1k chr04 62 592 568956 568955 F 531 0.00 1375 reject_low 5 ALIGNMENT 0 Y12-6o18.q1k chr04 678 879 569040 569039 F 202 0.00 1375 reject_low 5 ALIGNMENT 0 Y12-6o18.q1k chr15 678 879 572037 572036 F 202 0.00 1375 reject_low 13 ALIGNMENT 649 Y12-6o19.p1k chr12 212 1081 840937 841794 F 870 93.56 1292 accept 0 ALIGNMENT 902 Y12-6o19.q1k chr12 1153 39 843565 844659 C 1115 95.52 1296 accept 0 ALIGNMENT 552 Y12-6o20.p1k chr04 1003 222 350616 351372 C 782 92.97 1297 accept 0 ALIGNMENT 970 Y12-6o20.q1k chr04 29 1259 345961 347194 F 1231 94.23 1311 accept 0 ALIGNMENT 1007 Y12-6o21.q1k chr10 28 1214 389300 390481 F 1187 96.12 1218 accept 0 ALIGNMENT 700 Y12-6o21.p1k chr10 1112 231 392601 393472 C 882 94.22 1332 accept 0 ALIGNMENT 926 Y12-6o22.p1k chr12 26 1169 452471 453599 F 1144 94.76 1223 accept 0 ALIGNMENT 841 Y12-6o22.q1k chr12 970 12 464884 465840 C 959 96.35 1269 accept 1 ALIGNMENT 926 Y12-6o22.p1k chr12 26 1169 461608 462736 F 1144 94.76 1223 accept 1 ALIGNMENT 81 Y12-6o22.p1k chr12 26 131 490439 490543 F 106 93.40 1223 reject_low 2 ALIGNMENT 841 Y12-6o22.q1k chr12 970 12 455747 456703 C 959 96.35 1269 accept 0 ALIGNMENT 0 Y12-6o22.p1k chr12 132 773 490543 490542 F 642 0.00 1223 reject_low 2 ALIGNMENT 825 Y12-6o23.q1k chr09 1012 36 153272 154244 C 977 97.13 1226 accept 0 ALIGNMENT 600 Y12-6o23.p1k chr09 314 1051 150933 151657 F 738 95.66 1359 accept 0 ALIGNMENT 689 Y12-6o24.q1k chr16 1200 28 851092 852260 C 1173 88.41 1251 ambiguous_trans 14 ALIGNMENT 971 Y12-6o24.q1k chr02 28 1200 225326 226494 F 1173 96.25 1251 ambiguous_trans 2 ALIGNMENT 675 Y12-6o24.q1k chr05 1158 28 443900 445027 C 1131 88.68 1251 ambiguous_trans 20 ALIGNMENT 829 Y12-6o24.q1k chr13 1200 28 373163 374331 C 1173 92.33 1251 ambiguous_trans 10 ALIGNMENT 658 Y12-6o24.q1k chr10 28 1158 476667 477794 F 1131 88.06 1251 ambiguous_trans 24 ALIGNMENT 826 Y12-6o24.q1k chr12 1200 28 215548 216716 C 1173 92.24 1251 ambiguous_trans_ua 11 ALIGNMENT 607 Y12-6o24.q1k chr16 1002 28 805301 806272 C 975 89.33 1251 ambiguous_trans 27 ALIGNMENT 675 Y12-6o24.q1k chr16 28 1158 60741 61868 F 1131 88.59 1251 ambiguous_trans 23 ALIGNMENT 860 Y12-6o24.q1k chr02 28 1200 263863 265031 F 1173 93.09 1251 ambiguous_trans 9 ALIGNMENT 80 Y12-6o24.p1k chr12 21 117 490445 490543 F 97 95.88 1193 reject_low 13 ALIGNMENT 953 Y12-6o24.q1k chr07 28 1200 540054 541222 F 1173 95.74 1251 ambiguous_trans 4 ALIGNMENT 664 Y12-6o24.q1k chr12 28 914 655114 655998 F 887 93.46 1251 ambiguous_trans 25 ALIGNMENT 966 Y12-6o24.p1k chr12 20 1073 452476 453522 F 1054 98.01 1193 accept 0 ALIGNMENT 686 Y12-6o24.q1k chr13 28 1200 188454 189622 F 1173 88.24 1251 ambiguous_trans 15 ALIGNMENT 966 Y12-6o24.p1k chr12 20 1073 461613 462659 F 1054 98.01 1193 accept 1 ALIGNMENT 628 Y12-6o24.q1k chr04 821 28 987558 988350 C 794 94.84 1251 ambiguous_trans 26 ALIGNMENT 935 Y12-6o24.q1k chr14 1200 28 97071 98239 C 1173 95.31 1251 ambiguous_trans 6 ALIGNMENT 675 Y12-6o24.q1k chr13 28 1158 200621 201748 F 1131 88.59 1251 ambiguous_trans 21 ALIGNMENT 944 Y12-6o24.q1k chr10 28 1200 482251 483419 F 1173 95.48 1251 ambiguous_trans 5 ALIGNMENT 829 Y12-6o24.q1k chr05 1177 28 492981 494126 C 1150 92.78 1251 ambiguous_trans 12 ALIGNMENT 686 Y12-6o24.q1k chr16 28 1200 848701 849869 F 1173 88.24 1251 ambiguous_trans 16 ALIGNMENT 863 Y12-6o24.q1k chr07 1200 28 817859 819027 C 1173 93.18 1251 ambiguous_trans 7 ALIGNMENT 0 Y12-6o24.p1k chr12 118 849 490543 490542 F 732 0.00 1193 reject_low 13 ALIGNMENT 675 Y12-6o24.q1k chr15 28 1158 121992 123119 F 1131 88.59 1251 ambiguous_trans 22 ALIGNMENT 681 Y12-6o24.q1k chr01 1158 28 160746 161873 C 1131 88.86 1251 ambiguous_trans 19 ALIGNMENT 704 Y12-6o24.q1k chr04 28 1002 1210980 1211951 F 975 92.51 1251 ambiguous_trans 18 ALIGNMENT 683 Y12-6o24.q1k chr04 28 1168 1100052 1101188 F 1141 88.69 1251 ambiguous_trans 17 ALIGNMENT 965 Y12-6o24.q1k chr13 1200 28 357465 358633 C 1173 96.08 1251 ambiguous_trans 3 ALIGNMENT 863 Y12-6o24.q1k chr15 28 1200 599105 600273 F 1173 93.18 1251 ambiguous_trans 8 ALIGNMENT 1031 Y12-6p01.q1k chr04 1226 29 153258 154469 C 1198 96.49 1352 accept 0 ALIGNMENT 852 Y12-6p01.p1k chr04 67 1029 149671 150620 F 963 97.51 1223 accept 0 ALIGNMENT 1001 Y12-6p03.q1k chr05 30 1305 467264 468531 F 1276 93.89 1328 accept 0 ALIGNMENT 682 Y12-6p03.p1k chr05 1171 260 471181 472074 C 912 93.75 1263 accept 0 ALIGNMENT 968 Y12-6p04.q1k chr07 1195 30 956469 957628 C 1166 95.71 1293 accept 0 ALIGNMENT 23 Y12-6p04.q1k chr13 193 141 587686 587738 C 53 94.34 1293 reject_low 2 ALIGNMENT 0 Y12-6p04.q1k chr04 108 62 390510 390509 C 47 0.00 1293 reject_low 1 ALIGNMENT 30 Y12-6p04.q1k chr04 194 109 390424 390509 C 86 89.53 1293 reject_low 1 ALIGNMENT 817 Y12-6p04.p1k chr07 85 1139 952681 953718 F 1055 93.93 1247 accept 0 ALIGNMENT 0 Y12-6p04.q1k chr13 888 194 587687 587686 C 695 0.00 1293 reject_low 2 ALIGNMENT 0 Y12-6p04.q1k chr13 140 62 587739 587738 C 79 0.00 1293 reject_low 2 ALIGNMENT 0 Y12-6p04.q1k chr04 888 195 390425 390424 C 694 0.00 1293 reject_low 1 ALIGNMENT 773 Y12-6p05.p1k chr12 265 1158 462943 463835 F 894 96.20 1269 reject_low 1 ALIGNMENT 1067 Y12-6p05.q1k chr12 1221 29 456271 457462 C 1193 96.73 1352 reject_low 2 ALIGNMENT 1075 Y12-6p05.q1k chr12 1268 29 465358 466599 C 1240 95.89 1352 accept 0 reject_low 1 ALIGNMENT 773 Y12-6p05.p1k chr12 265 1234 453806 454765 F 970 94.54 1269 accept 0 ALIGNMENT 282 Y12-6p06.p1k chr10 398 776 454236 454615 F 379 91.56 1357 reject_low 1 ALIGNMENT 0 Y12-6p06.p1k chr10 777 834 454615 454614 F 58 0.00 1357 reject_low 1 ALIGNMENT 197 Y12-6p06.p1k chr10 764 398 338180 338546 C 367 84.47 1357 reject_low 2 ALIGNMENT 0 Y12-6p06.p1k chr10 834 765 338181 338180 C 70 0.00 1357 reject_low 2 ALIGNMENT 721 Y12-6p06.p1k chr07 398 1355 883456 884409 F 958 93.22 1357 accept 0 ALIGNMENT 241 Y12-6p07.p1k chr11 385 905 387691 388197 F 521 83.11 1423 accept 0 ALIGNMENT 592 Y12-6p07.q1k chr11 1024 51 390217 391186 C 974 88.09 1296 accept 0 ALIGNMENT 926 Y12-6p08.q1k chr13 1134 28 348260 349384 C 1107 96.75 1497 accept 0 ALIGNMENT 726 Y12-6p08.p1k chr13 309 1211 345603 346501 F 903 95.02 1310 accept 0 ALIGNMENT 1029 Y12-6p09.q1k chr02 1279 31 500113 501361 C 1249 95.04 1334 accept 0 ALIGNMENT 716 Y12-6p09.p1k chr02 279 1129 496840 497684 F 851 96.00 1265 accept 0 ALIGNMENT 459 Y12-6p10.p1k chr12 290 960 823114 823788 F 671 93.74 1365 accept 0 ALIGNMENT 958 Y12-6p11.p1k chr12 21 1141 27748 28853 F 1121 96.61 1239 accept 0 ALIGNMENT 1002 Y12-6p11.q1k chr12 1169 30 30415 31544 C 1140 97.28 1368 accept 0 ALIGNMENT 892 Y12-6p13.p1k chr08 1067 16 100290 101338 C 1052 96.67 1239 accept 0 ALIGNMENT 1043 Y12-6p13.q1k chr08 31 1276 97010 98256 F 1246 95.43 1322 accept 0 ALIGNMENT 764 Y12-6p14.p1k chr07 22 1042 16416 17413 F 1021 94.52 1247 accept 0 ALIGNMENT 366 Y12-6p15.p1k chr16 787 269 653976 654487 C 519 92.29 1371 accept 0 ALIGNMENT 0 Y12-6p16.p1k chr07 669 912 972284 972525 F 244 0.00 1261 reject_low 4 ALIGNMENT 917 Y12-6p16.p1k chr13 14 1021 672674 673678 F 1008 97.62 1261 accept 0 ALIGNMENT 23 Y12-6p16.p1k chr07 913 947 972526 972560 F 35 94.29 1261 reject_low 4 ALIGNMENT 0 Y12-6p16.p1k chr07 62 478 972094 972093 F 417 0.00 1261 reject_low 4 ALIGNMENT 0 Y12-6p16.q1k vc_1 862 34 2497 2496 C 829 0.00 1316 reject_low 1 ALIGNMENT 0 Y12-6p16.q1k vc_4 34 862 5847 5846 F 829 0.00 1316 reject_low 3 ALIGNMENT 0 Y12-6p16.q1k vc_3 862 34 2497 2496 C 829 0.00 1316 reject_low 2 ALIGNMENT 27 Y12-6p16.q1k vc_1 33 7 2496 2522 C 27 100.00 1316 reject_low 1 ALIGNMENT 57 Y12-6p16.p1k chr07 479 668 972094 972283 F 190 76.84 1261 reject_low 4 ALIGNMENT 27 Y12-6p16.q1k vc_4 7 33 5821 5847 F 27 100.00 1316 reject_low 3 ALIGNMENT 27 Y12-6p16.q1k vc_3 33 7 2496 2522 C 27 100.00 1316 reject_low 2 ALIGNMENT 1006 Y12-6p16.q1k chr13 1204 38 676150 677316 C 1167 96.14 1316 accept 0 ALIGNMENT 0 Y12-6p17.q1k chr06 876 62 31730 31729 C 815 0.00 1321 reject_low 6 ALIGNMENT 0 Y12-6p17.p1k chr10 294 741 729910 729909 F 448 0.00 1257 reject_low 5 ALIGNMENT 77 Y12-6p17.q1k chr06 984 877 31622 31729 C 108 93.52 1321 reject_low 6 ALIGNMENT 0 Y12-6p17.p1k chr04 741 294 15806 15805 C 448 0.00 1257 reject_low 4 ALIGNMENT 924 Y12-6p17.q1k chr12 31 1149 467604 468723 F 1119 96.25 1321 manual 1 ALIGNMENT 121 Y12-6p17.p1k chr10 73 293 729691 729910 F 221 85.97 1257 reject_low 5 ALIGNMENT 928 Y12-6p17.q1k chr12 31 1267 458467 459709 F 1237 93.69 1321 manual 0 ALIGNMENT 810 Y12-6p17.p1k chr14 1094 73 13645 14653 C 1022 94.52 1257 ambiguous_tel 3 ALIGNMENT 121 Y12-6p17.p1k chr04 293 73 15805 16024 C 221 85.97 1257 reject_low 4 ALIGNMENT 821 Y12-6p17.p1k chr06 1134 73 11705 12750 C 1062 94.07 1257 ambiguous_tel 2 ALIGNMENT 927 Y12-6p18.p1k chr13 1095 19 119901 120963 C 1077 97.21 1274 accept 0 ALIGNMENT 966 Y12-6p20.q1k chr07 1187 32 681342 682488 C 1156 95.85 1318 accept 0 ALIGNMENT 630 Y12-6p20.p1k chr07 248 1006 676776 677518 F 759 95.78 1384 accept 0 ALIGNMENT 0 Y12-6p21.q1k chr08 849 358 548720 548719 C 492 0.00 1325 reject_low 24 ALIGNMENT 799 Y12-6p21.q1k chr13 25 994 184753 185711 F 970 96.19 1325 ambiguous_trans 8 ALIGNMENT 796 Y12-6p21.q1k chr01 994 25 164617 165575 C 970 96.08 1325 reject_low 19 ALIGNMENT 138 Y12-6p21.p1k chr12 526 796 216358 216626 F 271 85.61 1312 ambiguous_trans_ua 13 ALIGNMENT 793 Y12-6p21.q1k chr16 25 994 844997 845955 F 970 95.98 1325 ambiguous_trans 10 ALIGNMENT 157 Y12-6p21.p1k chr02 836 526 263917 264221 C 311 85.85 1312 ambiguous_trans 5 ALIGNMENT 796 Y12-6p21.q1k chr12 994 25 219459 220417 C 970 96.08 1325 ambiguous_trans_ua 13 ALIGNMENT 790 Y12-6p21.q1k chr02 25 994 260159 261117 F 970 95.88 1325 ambiguous_trans 5 ALIGNMENT 141 Y12-6p21.p1k chr08 526 796 544881 545149 F 271 85.98 1312 reject_low 22 ALIGNMENT 796 Y12-6p21.q1k chr10 25 994 472966 473924 F 970 96.08 1325 ambiguous_trans 3 ALIGNMENT 793 Y12-6p21.q1k chr16 994 25 855003 855961 C 970 95.98 1325 ambiguous_trans 11 ALIGNMENT 130 Y12-6p21.p1k chr12 526 836 477251 477555 F 311 83.28 1312 reject_low 30 ALIGNMENT 796 Y12-6p21.q1k chr04 994 25 991093 992051 C 970 96.08 1325 ambiguous_trans 1 ALIGNMENT 139 Y12-6p21.p1k chr16 526 836 805914 806218 F 311 84.24 1312 ambiguous_trans 9 ALIGNMENT 203 Y12-6p21.p1k chr04 521 836 987987 988296 F 316 89.87 1312 ambiguous_trans 1 ALIGNMENT 130 Y12-6p21.p1k chr13 836 526 200675 200979 C 311 83.28 1312 ambiguous_trans 16 ALIGNMENT 796 Y12-6p21.q1k chr12 25 994 593732 594690 F 970 96.08 1325 reject_low 20 ALIGNMENT 203 Y12-6p21.p1k chr04 836 521 1211034 1211343 C 316 89.87 1312 ambiguous_trans 2 ALIGNMENT 203 Y12-6p21.p1k chr12 836 521 655168 655477 C 316 89.87 1312 reject_low 26 ALIGNMENT 650 Y12-6p21.q1k chr08 994 242 547982 548720 C 753 97.74 1325 reject_low 22 ALIGNMENT 796 Y12-6p21.q1k chr13 994 25 377074 378032 C 970 96.08 1325 ambiguous_trans 14 ALIGNMENT 453 Y12-6p21.q1k chr02 55 930 221659 222530 F 876 85.16 1325 reject_low 23 ALIGNMENT 142 Y12-6p21.p1k chr13 836 526 188508 188812 C 311 84.57 1312 ambiguous_trans 8 ALIGNMENT 799 Y12-6p21.q1k chr07 994 25 566221 567179 C 970 96.19 1325 ambiguous_trans 7 ALIGNMENT 203 Y12-6p21.p1k chr10 836 521 482305 482614 C 316 89.87 1312 ambiguous_trans 3,4 ALIGNMENT 130 Y12-6p21.p1k chr05 526 836 444669 444973 F 311 83.28 1312 ambiguous_trans 15 ALIGNMENT 799 Y12-6p21.q1k chr07 994 25 821770 822728 C 970 96.19 1325 reject_low 18 ALIGNMENT 206 Y12-6p21.p1k chr07 836 521 540108 540417 C 316 90.19 1312 ambiguous_trans 0 ALIGNMENT 142 Y12-6p21.p1k chr04 836 526 1100106 1100410 C 311 84.57 1312 ambiguous_trans 6 ALIGNMENT 0 Y12-6p21.q1k chr08 241 107 548721 548720 C 135 0.00 1325 reject_low 22 ALIGNMENT 138 Y12-6p21.p1k chr13 526 796 373973 374241 F 271 85.61 1312 ambiguous_trans 14 ALIGNMENT 157 Y12-6p21.p1k chr15 836 526 599159 599463 C 311 85.85 1312 reject_low 28 ALIGNMENT 142 Y12-6p21.p1k chr16 836 526 848755 849059 C 311 84.57 1312 ambiguous_trans 10 ALIGNMENT 259 Y12-6p21.q1k chr08 357 25 548719 549054 C 333 93.99 1325 reject_low 24 ALIGNMENT 139 Y12-6p21.p1k chr10 836 526 476721 477025 C 311 84.24 1312 reject_low 29 ALIGNMENT 796 Y12-6p21.q1k chr07 25 994 536353 537311 F 970 96.08 1325 ambiguous_trans 0 ALIGNMENT 142 Y12-6p21.p1k chr07 526 836 563120 563424 F 311 84.57 1312 ambiguous_trans 7 ALIGNMENT 206 Y12-6p21.p1k chr13 521 836 358270 358579 F 316 90.19 1312 reject_low 25 ALIGNMENT 799 Y12-6p21.q1k chr04 25 994 1096351 1097309 F 970 96.19 1325 ambiguous_trans 6 ALIGNMENT 138 Y12-6p21.p1k chr05 526 796 493768 494036 F 271 85.61 1312 ambiguous_trans 12 ALIGNMENT 796 Y12-6p21.q1k chr10 25 994 478550 479508 F 970 96.08 1325 ambiguous_trans 4 ALIGNMENT 209 Y12-6p21.p1k chr02 836 521 225380 225689 C 316 90.51 1312 reject_low 23 ALIGNMENT 796 Y12-6p21.q1k chr04 25 994 1207279 1208237 F 970 96.08 1325 ambiguous_trans 2 ALIGNMENT 130 Y12-6p21.p1k chr15 836 526 122046 122350 C 311 83.28 1312 reject_low 31 ALIGNMENT 194 Y12-6p21.p1k chr14 521 836 97876 98185 F 316 88.92 1312 reject_low 27 ALIGNMENT 796 Y12-6p21.q1k chr13 25 994 196920 197878 F 970 96.08 1325 ambiguous_trans 16 ALIGNMENT 796 Y12-6p21.q1k chr05 994 25 496869 497827 C 970 96.08 1325 ambiguous_trans 12 ALIGNMENT 799 Y12-6p21.q1k chr04 994 25 649871 650829 C 970 96.19 1325 reject_low 17 ALIGNMENT 796 Y12-6p21.q1k chr16 25 994 57040 57998 F 970 96.08 1325 reject_low 21 ALIGNMENT 796 Y12-6p21.q1k chr16 994 25 809015 809973 C 970 96.08 1325 ambiguous_trans 9 ALIGNMENT 796 Y12-6p21.q1k chr05 994 25 447770 448728 C 970 96.08 1325 ambiguous_trans 15 ALIGNMENT 139 Y12-6p21.p1k chr16 526 836 851902 852206 F 311 84.24 1312 ambiguous_trans 11 ALIGNMENT 658 Y12-6p22.p1k chr12 222 988 341278 342033 F 767 96.48 1281 accept 0 ALIGNMENT 1022 Y12-6p23.q1k chr09 27 1232 220207 221416 F 1206 96.10 1232 accept 0 ALIGNMENT 636 Y12-6p23.p1k chr09 1012 218 224578 225357 C 795 96.23 1204 accept 0 ALIGNMENT 686 Y12-6p24.p1k chr08 1012 263 175805 176549 C 750 97.60 1179 accept 0 ALIGNMENT 994 Y12-6p24.q1k chr08 37 1232 171988 173190 F 1196 95.23 1232 accept 0 ALIGNMENT 413 Y12-7a01.p1k chr02 86 716 514439 515067 F 631 90.17 1458 accept 0 ALIGNMENT 673 Y12-7a03.p1k chr05 24 914 10039 10928 F 891 93.49 1448 accept_chi 0 ALIGNMENT 298 Y12-7a03.q1k chr15 220 837 674597 675209 F 618 83.82 1490 accept_chi 1 ALIGNMENT 759 Y12-7a04.p1k chr12 930 21 551229 552139 C 910 95.16 1473 accept 0 ALIGNMENT 358 Y12-7a06.q1k chr02 202 1031 762230 763052 F 830 82.89 1431 accept 0 ALIGNMENT 183 Y12-7a07.p1k chr03 17 822 196618 197423 F 806 74.94 1488 accept 0 ALIGNMENT 727 Y12-7a07.q1k chr03 1162 32 200931 202063 C 1131 90.10 1365 accept 0 ALIGNMENT 546 Y12-7a08.p1k chr02 12 641 431476 432103 F 630 96.51 1603 accept 0 ALIGNMENT 1002 Y12-7a10.p1k chr12 1145 21 456565 457705 C 1125 97.33 1424 reject_low 1 ALIGNMENT 937 Y12-7a10.q1k chr12 37 1126 462500 463585 F 1090 95.96 1377 accept 0 ALIGNMENT 1002 Y12-7a10.p1k chr12 1145 21 465702 466842 C 1125 97.33 1424 accept 0 ALIGNMENT 933 Y12-7a10.q1k chr12 37 1092 453363 454414 F 1056 96.69 1377 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr05 658 673 4323 4384 F 16 0.00 1344 reject_low 17 ALIGNMENT 0 Y12-7a11.q1k chr14 288 322 3323 3421 F 35 0.00 1344 reject_low 8 ALIGNMENT 0 Y12-7a11.q1k chr08 323 324 558991 559024 C 0 0.00 1344 reject_low 16 ALIGNMENT 61 Y12-7a11.q1k chr06 212 287 2502 2576 F 76 94.74 1344 reject_low 10 ALIGNMENT 0 Y12-7a11.q1k chr09 522 521 4007 4471 F 0 0.00 1344 reject_low 6 ALIGNMENT 187 Y12-7a11.q1k chr05 1007 674 572254 572589 C 334 86.83 1344 reject_low 7 ALIGNMENT 199 Y12-7a11.q1k chr16 674 1138 4211 4684 F 465 82.80 1344 reject_low 5 ALIGNMENT 0 Y12-7a11.q1k chr08 627 574 558724 558742 C 54 0.00 1344 reject_low 16 ALIGNMENT 87 Y12-7a11.q1k chr08 628 729 3639 3740 F 102 95.10 1344 reject_low 14 ALIGNMENT 0 Y12-7a11.q1k chr16 520 519 3526 3990 F 0 0.00 1344 reject_low 5 ALIGNMENT 0 Y12-7a11.q1k chr05 519 520 572810 573274 C 0 0.00 1344 reject_low 7 ALIGNMENT 0 Y12-7a11.q1k chr12 288 291 9075 9108 F 4 0.00 1344 reject_low 19 ALIGNMENT 196 Y12-7a11.q1k chr12 323 573 9174 9422 F 251 93.23 1344|1,0 reject_low 12 ALIGNMENT 193 Y12-7a11.q1k chr02 323 573 3840 4088 F 251 92.83 1344|1,0 reject_low 15 ALIGNMENT 75 Y12-7a11.q1k chr16 518 602 3989 4073 F 85 96.47 1344|2,0 reject_low 5 ALIGNMENT 0 Y12-7a11.q1k chr06 288 291 2577 2610 F 4 0.00 1344 reject_low 10 ALIGNMENT 0 Y12-7a11.q1k chr13 288 291 3416 3449 F 4 0.00 1344 reject_low 13 ALIGNMENT 0 Y12-7a11.q1k chr10 288 291 3694 3727 F 4 0.00 1344 reject_low 9 ALIGNMENT 78 Y12-7a11.q1k chr12 602 518 1067436 1067520 C 85 97.65 1344|0,2 reject_low 18 ALIGNMENT 48 Y12-7a11.q1k chr09 603 657 4573 4627 F 55 96.36 1344 reject_low 6 ALIGNMENT 0 Y12-7a11.q1k chr04 322 288 1528641 1528739 C 35 0.00 1344 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr06 324 323 2643 2676 F 0 0.00 1344 reject_low 10 ALIGNMENT 0 Y12-7a11.q1k chr16 291 288 944604 944637 C 4 0.00 1344 accept 0 ALIGNMENT 0 Y12-7a11.q1k chr15 602 603 1087043 1087062 C 0 0.00 1344 reject_low 3 ALIGNMENT 0 Y12-7a11.q1k chr12 324 323 3606 3639 F 0 0.00 1344 reject_low 11 ALIGNMENT 0 Y12-7a11.q1k chr16 62 211 3157 3156 F 150 0.00 1344 reject_low 5 ALIGNMENT 0 Y12-7a11.q1k chr04 519 520 1527981 1528445 C 0 0.00 1344 reject_low 1 ALIGNMENT 26 Y12-7a11.q1k chr12 1138 953 1066904 1067097 C 186 74.19 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr10 324 323 3760 3793 F 0 0.00 1344 reject_low 9 ALIGNMENT 0 Y12-7a11.q1k chr05 322 288 573470 573568 C 35 0.00 1344 reject_low 7 ALIGNMENT 0 Y12-7a11.q1k chr16 288 322 3232 3330 F 35 0.00 1344 reject_low 5 ALIGNMENT 61 Y12-7a11.q1k chr16 287 212 944638 944712 C 76 94.74 1344 accept 0 ALIGNMENT 0 Y12-7a11.q1k chr14 658 673 4240 4301 F 16 0.00 1344 reject_low 8 ALIGNMENT 0 Y12-7a11.q1k chr08 211 62 559166 559165 C 150 0.00 1344 reject_low 16 ALIGNMENT 0 Y12-7a11.q1k chr12 211 62 1068353 1068352 C 150 0.00 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr12 952 848 1067098 1067124 C 105 0.00 1344 reject_low 18 ALIGNMENT 61 Y12-7a11.q1k chr12 287 212 1068278 1068352 C 76 94.74 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr08 288 291 3272 3305 F 4 0.00 1344 reject_low 14 ALIGNMENT 147 Y12-7a11.q1k chr12 521 323 1067982 1068178 C 199 91.96 1344|2,0 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr12 325 724 9141 9140 F 400 0.00 1344 reject_low 19 ALIGNMENT 87 Y12-7a11.q1k chr12 628 729 3907 4008 F 102 95.10 1344 reject_low 11 ALIGNMENT 196 Y12-7a11.q1k chr12 323 573 3639 3887 F 251 93.23 1344|1,0 reject_low 11 ALIGNMENT 0 Y12-7a11.q1k chr12 322 288 1074842 1074940 C 35 0.00 1344 reject_low 2 ALIGNMENT 55 Y12-7a11.q1k chr09 212 287 3636 3710 F 76 92.11 1344 reject_low 6 ALIGNMENT 87 Y12-7a11.q1k chr13 628 729 3783 3884 F 102 95.10 1344 reject_low 13 ALIGNMENT 0 Y12-7a11.q1k chr14 520 519 3617 4081 F 0 0.00 1344 reject_low 8 ALIGNMENT 55 Y12-7a11.q1k chr10 212 287 3619 3693 F 76 92.11 1344 reject_low 9 ALIGNMENT 61 Y12-7a11.q1k chr12 212 287 3465 3539 F 76 94.74 1344 reject_low 11,12 ALIGNMENT 48 Y12-7a11.q1k chr07 657 603 1086729 1086783 C 55 96.36 1344 reject_low 4 ALIGNMENT 0 Y12-7a11.q1k chr16 323 324 944538 944571 C 0 0.00 1344 accept 0 ALIGNMENT 204 Y12-7a11.q1k chr10 674 1007 4673 5009 F 334 88.62 1344 reject_low 9 ALIGNMENT 0 Y12-7a11.q1k chr08 62 211 3197 3196 F 150 0.00 1344 reject_low 14 ALIGNMENT 87 Y12-7a11.q1k chr16 729 628 944169 944270 C 102 95.10 1344 accept 0 ALIGNMENT 48 Y12-7a11.q1k chr10 603 657 4556 4610 F 55 96.36 1344 reject_low 9 ALIGNMENT 75 Y12-7a11.q1k chr14 518 602 4080 4164 F 85 96.47 1344|2,0 reject_low 8 ALIGNMENT 187 Y12-7a11.q1k chr14 674 1007 4302 4637 F 334 86.83 1344 reject_low 8 ALIGNMENT 0 Y12-7a11.q1k chr12 574 627 9423 9441 F 54 0.00 1344 reject_low 12 ALIGNMENT 139 Y12-7a11.q1k chr05 674 847 4385 4558 F 174 94.25 1344 reject_low 17 ALIGNMENT 21 Y12-7a11.q1k chr12 292 324 3574 3606 F 33 87.88 1344|0,1 reject_low 11,12 ALIGNMENT 0 Y12-7a11.q1k chr07 211 62 1087721 1087720 C 150 0.00 1344 reject_low 4 ALIGNMENT 0 Y12-7a11.q1k chr05 520 519 3681 4164 F 0 0.00 1344 reject_low 17 ALIGNMENT 0 Y12-7a11.q1k chr16 603 602 4074 4093 F 0 0.00 1344 reject_low 5 ALIGNMENT 147 Y12-7a11.q1k chr12 521 323 1074645 1074841 C 199 91.96 1344|2,0 reject_low 2 ALIGNMENT 0 Y12-7a11.q1k chr12 211 62 1075016 1075015 C 150 0.00 1344 reject_low 2 ALIGNMENT 0 Y12-7a11.q1k chr13 324 323 3482 3515 F 0 0.00 1344 reject_low 13 ALIGNMENT 21 Y12-7a11.q1k chr06 292 324 2611 2643 F 33 87.88 1344|0,1 reject_low 10 ALIGNMENT 0 Y12-7a11.q1k chr05 673 658 572590 572651 C 16 0.00 1344 reject_low 7 ALIGNMENT 48 Y12-7a11.q1k chr16 603 657 4094 4148 F 55 96.36 1344 reject_low 5 ALIGNMENT 0 Y12-7a11.q1k chr08 291 288 559057 559090 C 4 0.00 1344 reject_low 16 ALIGNMENT 0 Y12-7a11.q1k chr04 602 603 1527878 1527897 C 0 0.00 1344 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr09 603 602 4553 4572 F 0 0.00 1344 reject_low 6 ALIGNMENT 58 Y12-7a11.q1k chr02 212 287 3666 3740 F 76 93.42 1344 reject_low 15 ALIGNMENT 0 Y12-7a11.q1k chr12 62 211 9000 8999 F 150 0.00 1344 reject_low 19 ALIGNMENT 0 Y12-7a11.q1k chr02 62 211 3666 3665 F 150 0.00 1344 reject_low 15 ALIGNMENT 0 Y12-7a11.q1k chr12 574 627 3888 3906 F 54 0.00 1344 reject_low 11 ALIGNMENT 150 Y12-7a11.q1k chr07 521 323 1087350 1087546 C 199 92.46 1344|2,0 reject_low 4 ALIGNMENT 21 Y12-7a11.q1k chr12 292 324 9109 9141 F 33 87.88 1344 reject_low 19 ALIGNMENT 150 Y12-7a11.q1k chr14 323 521 3422 3618 F 199 92.46 1344|0,2 reject_low 8 ALIGNMENT 0 Y12-7a11.q1k chr08 574 627 3620 3638 F 54 0.00 1344 reject_low 14 ALIGNMENT 0 Y12-7a11.q1k chr04 673 658 1527761 1527822 C 16 0.00 1344 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr07 602 603 1086784 1086803 C 0 0.00 1344 reject_low 4 ALIGNMENT 61 Y12-7a11.q1k chr16 212 287 3157 3231 F 76 94.74 1344 reject_low 5 ALIGNMENT 199 Y12-7a11.q1k chr16 573 323 944290 944538 C 251 93.63 1344|0,1 accept 0 ALIGNMENT 199 Y12-7a11.q1k chr07 1138 674 1086193 1086666 C 465 83.01 1344 reject_low 4 ALIGNMENT 193 Y12-7a11.q1k chr08 573 323 558743 558991 C 251 92.83 1344|0,1 reject_low 16 ALIGNMENT 0 Y12-7a11.q1k chr05 602 603 572707 572726 C 0 0.00 1344 reject_low 7 ALIGNMENT 48 Y12-7a11.q1k chr05 603 657 4268 4322 F 55 96.36 1344 reject_low 17 ALIGNMENT 58 Y12-7a11.q1k chr08 287 212 559091 559165 C 76 93.42 1344 reject_low 16 ALIGNMENT 75 Y12-7a11.q1k chr09 521 602 4471 4552 F 82 97.56 1344|1,0 reject_low 6 ALIGNMENT 196 Y12-7a11.q1k chr13 323 573 3515 3763 F 251 93.23 1344|1,0 reject_low 13 ALIGNMENT 24 Y12-7a11.q1k chr10 292 324 3728 3760 F 33 90.91 1344|0,1 reject_low 9 ALIGNMENT 0 Y12-7a11.q1k chr04 211 62 1528815 1528814 C 150 0.00 1344 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr12 62 211 3465 3464 F 150 0.00 1344 reject_low 11,12 ALIGNMENT 0 Y12-7a11.q1k chr13 574 627 3764 3782 F 54 0.00 1344 reject_low 13 ALIGNMENT 0 Y12-7a11.q1k chr09 658 673 4628 4689 F 16 0.00 1344 reject_low 6 ALIGNMENT 0 Y12-7a11.q1k chr06 62 211 2502 2501 F 150 0.00 1344 reject_low 10 ALIGNMENT 75 Y12-7a11.q1k chr04 602 518 1527898 1527982 C 85 96.47 1344|0,2 reject_low 1 ALIGNMENT 196 Y12-7a11.q1k chr08 323 573 3371 3619 F 251 93.23 1344|1,0 reject_low 14 ALIGNMENT 0 Y12-7a11.q1k chr05 603 602 4248 4267 F 0 0.00 1344 reject_low 17 ALIGNMENT 0 Y12-7a11.q1k chr08 324 323 3338 3371 F 0 0.00 1344 reject_low 14 ALIGNMENT 0 Y12-7a11.q1k chr05 62 211 3312 3311 F 150 0.00 1344 reject_low 17 ALIGNMENT 0 Y12-7a11.q1k chr12 288 291 3540 3573 F 4 0.00 1344 reject_low 11,12 ALIGNMENT 0 Y12-7a11.q1k chr13 62 211 3341 3340 F 150 0.00 1344 reject_low 13 ALIGNMENT 0 Y12-7a11.q1k chr09 288 291 3711 3744 F 4 0.00 1344 reject_low 6 ALIGNMENT 48 Y12-7a11.q1k chr14 603 657 4185 4239 F 55 96.36 1344 reject_low 8 ALIGNMENT 196 Y12-7a11.q1k chr06 323 573 2676 2924 F 251 93.23 1344|1,0 reject_low 10 ALIGNMENT 21 Y12-7a11.q1k chr16 324 292 944571 944603 C 33 87.88 1344|1,0 accept 0 ALIGNMENT 0 Y12-7a11.q1k chr10 62 211 3619 3618 F 150 0.00 1344 reject_low 9 ALIGNMENT 0 Y12-7a11.q1k chr07 322 288 1087547 1087645 C 35 0.00 1344 reject_low 4 ALIGNMENT 87 Y12-7a11.q1k chr06 628 729 2944 3045 F 102 95.10 1344 reject_low 10 ALIGNMENT 48 Y12-7a11.q1k chr04 657 603 1527823 1527877 C 55 96.36 1344 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr07 673 658 1086667 1086728 C 16 0.00 1344 reject_low 4 ALIGNMENT 87 Y12-7a11.q1k chr02 628 729 4108 4209 F 102 95.10 1344 reject_low 15 ALIGNMENT 75 Y12-7a11.q1k chr05 602 518 572727 572811 C 85 96.47 1344|0,2 reject_low 7 ALIGNMENT 136 Y12-7a11.q1k chr12 847 674 1067125 1067298 C 174 93.68 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr02 324 323 3807 3840 F 0 0.00 1344 reject_low 15 ALIGNMENT 61 Y12-7a11.q1k chr04 287 212 1528740 1528814 C 76 94.74 1344 reject_low 1 ALIGNMENT 61 Y12-7a11.q1k chr07 287 212 1087646 1087720 C 76 94.74 1344 reject_low 4 ALIGNMENT 21 Y12-7a11.q1k chr08 324 292 559024 559056 C 33 87.88 1344|1,0 reject_low 16 ALIGNMENT 147 Y12-7a11.q1k chr15 521 323 1087609 1087805 C 199 91.96 1344|2,0 reject_low 3 ALIGNMENT 0 Y12-7a11.q1k chr16 211 62 944713 944712 C 150 0.00 1344 accept 0 ALIGNMENT 141 Y12-7a11.q1k chr05 323 521 3486 3682 F 199 90.95 1344|1,2 reject_low 17 ALIGNMENT 211 Y12-7a11.q1k chr04 1138 674 1527287 1527760 C 465 83.87 1344 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr15 519 520 1087146 1087610 C 0 0.00 1344 reject_low 3 ALIGNMENT 0 Y12-7a11.q1k chr12 324 323 3606 9174 F 0 0.00 1344 reject_low 12 ALIGNMENT 87 Y12-7a11.q1k chr12 628 729 9442 9543 F 102 95.10 1344 reject_low 12 ALIGNMENT 24 Y12-7a11.q1k chr05 292 324 3421 3453 F 33 90.91 1344|0,1 reject_low 17 ALIGNMENT 61 Y12-7a11.q1k chr05 287 212 573569 573643 C 76 94.74 1344 reject_low 7 ALIGNMENT 0 Y12-7a11.q1k chr14 62 211 3248 3247 F 150 0.00 1344 reject_low 8 ALIGNMENT 61 Y12-7a11.q1k chr05 212 287 3312 3386 F 76 94.74 1344 reject_low 17 ALIGNMENT 0 Y12-7a11.q1k chr07 519 520 1086887 1087351 C 0 0.00 1344 reject_low 4 ALIGNMENT 0 Y12-7a11.q1k chr09 62 211 3636 3635 F 150 0.00 1344 reject_low 6 ALIGNMENT 0 Y12-7a11.q1k chr12 673 658 1073962 1074023 C 16 0.00 1344 reject_low 2 ALIGNMENT 0 Y12-7a11.q1k chr12 602 603 1074079 1074098 C 0 0.00 1344 reject_low 2 ALIGNMENT 48 Y12-7a11.q1k chr12 657 603 1074024 1074078 C 55 96.36 1344 reject_low 2 ALIGNMENT 0 Y12-7a11.q1k chr05 211 62 573644 573643 C 150 0.00 1344 reject_low 7 ALIGNMENT 0 Y12-7a11.q1k chr12 519 520 1074182 1074646 C 0 0.00 1344 reject_low 2 ALIGNMENT 75 Y12-7a11.q1k chr15 602 518 1087063 1087147 C 85 96.47 1344|0,2 reject_low 3 ALIGNMENT 0 Y12-7a11.q1k chr02 288 291 3741 3774 F 4 0.00 1344 reject_low 15 ALIGNMENT 0 Y12-7a11.q1k chr16 627 574 944271 944289 C 54 0.00 1344 accept 0 ALIGNMENT 61 Y12-7a11.q1k chr13 212 287 3341 3415 F 76 94.74 1344 reject_low 13 ALIGNMENT 48 Y12-7a11.q1k chr12 657 603 1067361 1067415 C 55 96.36 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr15 322 62 1087806 1087805 C 261 0.00 1344 reject_low 3 ALIGNMENT 24 Y12-7a11.q1k chr09 292 324 3745 3777 F 33 90.91 1344|0,1 reject_low 6 ALIGNMENT 87 Y12-7a11.q1k chr08 729 628 558622 558723 C 102 95.10 1344 reject_low 16 ALIGNMENT 0 Y12-7a11.q1k chr15 673 658 1086926 1086987 C 16 0.00 1344 reject_low 3 ALIGNMENT 153 Y12-7a11.q1k chr09 323 521 3810 4006 F 199 92.96 1344|1,0 reject_low 6 ALIGNMENT 0 Y12-7a11.q1k chr12 519 520 1067519 1067983 C 0 0.00 1344 reject_low 18 ALIGNMENT 147 Y12-7a11.q1k chr04 521 323 1528444 1528640 C 199 91.96 1344|2,0 reject_low 1 ALIGNMENT 0 Y12-7a11.q1k chr02 574 627 4089 4107 F 54 0.00 1344 reject_low 15 ALIGNMENT 150 Y12-7a11.q1k chr16 323 521 3331 3527 F 199 92.46 1344|0,2 reject_low 5 ALIGNMENT 58 Y12-7a11.q1k chr08 212 287 3197 3271 F 76 93.42 1344 reject_low 14 ALIGNMENT 211 Y12-7a11.q1k chr15 1138 674 1086452 1086925 C 465 83.87 1344 reject_low 3 ALIGNMENT 0 Y12-7a11.q1k chr10 658 673 4611 4672 F 16 0.00 1344 reject_low 9 ALIGNMENT 211 Y12-7a11.q1k chr12 1138 674 1073488 1073961 C 465 83.87 1344 reject_low 2 ALIGNMENT 0 Y12-7a11.q1k chr06 574 627 2925 2943 F 54 0.00 1344 reject_low 10 ALIGNMENT 0 Y12-7a11.q1k chr10 603 602 4536 4555 F 0 0.00 1344 reject_low 9 ALIGNMENT 75 Y12-7a11.q1k chr07 602 518 1086804 1086888 C 85 96.47 1344|0,2 reject_low 4 ALIGNMENT 61 Y12-7a11.q1k chr12 212 287 9000 9074 F 76 94.74 1344 reject_low 19 ALIGNMENT 0 Y12-7a11.q1k chr12 673 658 1067299 1067360 C 16 0.00 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr12 602 603 1067416 1067435 C 0 0.00 1344 reject_low 18 ALIGNMENT 21 Y12-7a11.q1k chr08 292 324 3306 3338 F 33 87.88 1344|0,1 reject_low 14 ALIGNMENT 836 Y12-7a11.p1k chr16 18 1072 941050 942112 F 1055 94.50 1512 accept 0 ALIGNMENT 61 Y12-7a11.q1k chr12 287 212 1074941 1075015 C 76 94.74 1344 reject_low 2 ALIGNMENT 78 Y12-7a11.q1k chr05 518 602 4163 4247 F 85 97.65 1344|2,0 reject_low 17 ALIGNMENT 21 Y12-7a11.q1k chr02 292 324 3775 3807 F 33 87.88 1344|0,1 reject_low 15 ALIGNMENT 48 Y12-7a11.q1k chr05 657 603 572652 572706 C 55 96.36 1344 reject_low 7 ALIGNMENT 219 Y12-7a11.q1k chr09 674 1138 4690 5164 F 465 84.30 1344 reject_low 6 ALIGNMENT 0 Y12-7a11.q1k chr16 658 673 4149 4210 F 16 0.00 1344 reject_low 5 ALIGNMENT 0 Y12-7a11.q1k chr10 522 521 3990 4454 F 0 0.00 1344 reject_low 9 ALIGNMENT 0 Y12-7a11.q1k chr05 288 291 3387 3420 F 4 0.00 1344 reject_low 17 ALIGNMENT 0 Y12-7a11.q1k chr09 324 323 3777 3810 F 0 0.00 1344 reject_low 6 ALIGNMENT 75 Y12-7a11.q1k chr12 602 518 1074099 1074183 C 85 96.47 1344|0,2 reject_low 2 ALIGNMENT 153 Y12-7a11.q1k chr10 323 521 3793 3989 F 199 92.96 1344|1,0 reject_low 9 ALIGNMENT 75 Y12-7a11.q1k chr10 521 602 4454 4535 F 82 97.56 1344|1,0 reject_low 9 ALIGNMENT 48 Y12-7a11.q1k chr15 657 603 1086988 1087042 C 55 96.36 1344 reject_low 3 ALIGNMENT 150 Y12-7a11.q1k chr05 521 323 573273 573469 C 199 92.46 1344|2,0 reject_low 7 ALIGNMENT 0 Y12-7a11.q1k chr14 603 602 4165 4184 F 0 0.00 1344 reject_low 8 ALIGNMENT 61 Y12-7a11.q1k chr14 212 287 3248 3322 F 76 94.74 1344 reject_low 8 ALIGNMENT 21 Y12-7a11.q1k chr13 292 324 3450 3482 F 33 87.88 1344|0,1 reject_low 13 ALIGNMENT 0 Y12-7a11.q1k chr12 322 288 1068179 1068277 C 35 0.00 1344 reject_low 18 ALIGNMENT 0 Y12-7a11.q1k chr05 324 323 3453 3486 F 0 0.00 1344 reject_low 17 ALIGNMENT 42 Y12-7a13.p1k chr10 40 114 426522 426596 F 75 86.67 1461 reject_bad_break 0 ALIGNMENT 292 Y12-7a13.p1k chr10 127 683 426585 427136 F 557 85.46 1461 reject_bad_break 0 ALIGNMENT 0 Y12-7a13.p1k chr10 115 126 426597 426584 F 12 0.00 1461 reject_bad_break 0 ALIGNMENT 0 Y12-7a15.p1k chr05 62 595 354356 354355 F 534 0.00 1394 reject_low 27 ALIGNMENT 55 Y12-7a15.p1k chr14 493 587 562049 562141 F 95 88.42 1394 reject_low 56 ALIGNMENT 1051 Y12-7a15.q1k chr04 1201 36 648439 649609 C 1166 97.51 1341 reject_low 5 ALIGNMENT 0 Y12-7a15.p1k chr08 62 957 91762 91761 F 896 0.00 1394 reject_low 43 ALIGNMENT 0 Y12-7a15.p1k chr15 674 62 704064 704063 C 613 0.00 1394 reject_low 41 ALIGNMENT 0 Y12-7a15.p1k chr01 62 486 165836 165835 F 425 0.00 1394 reject_low 49 ALIGNMENT 0 Y12-7a15.p1k chr08 595 62 85906 85905 C 534 0.00 1394 reject_low 38 ALIGNMENT 299 Y12-7a15.p1k chr10 958 596 197469 197834 C 363 95.87 1394 reject_low 31 ALIGNMENT 0 Y12-7a15.p1k chr07 62 1010 111232 111231 F 949 0.00 1394 reject_low 55 ALIGNMENT 0 Y12-7a15.p1k chr04 595 62 437516 437515 C 534 0.00 1394 reject_low 39 ALIGNMENT 0 Y12-7a15.p1k chr14 595 62 561979 561978 C 534 0.00 1394 reject_low 35 ALIGNMENT 1042 Y12-7a15.q1k chr07 1201 36 820338 821508 C 1166 97.26 1341 reject_low 20 ALIGNMENT 44 Y12-7a15.p1k chr10 959 1055 203704 203802 F 97 86.60 1394 reject_low 44 ALIGNMENT 0 Y12-7a15.p1k chr07 62 595 931174 931173 F 534 0.00 1394 reject_low 40 ALIGNMENT 0 Y12-7a15.p1k chr16 62 595 442739 442738 F 534 0.00 1394 reject_low 37 ALIGNMENT 90 Y12-7a15.p1k chr14 487 595 96619 96727 F 109 95.41 1394 reject_low 1 ALIGNMENT 0 Y12-7a15.p1k chr10 595 62 203690 203689 C 534 0.00 1394 reject_low 32 ALIGNMENT 134 Y12-7a15.p1k chr14 958 807 96456 96608 C 152 97.37 1394 reject_low 45 ALIGNMENT 0 Y12-7a15.p1k chr01 62 486 160248 160247 F 425 0.00 1394 reject_low 2 ALIGNMENT 37 Y12-7a15.p1k chr07 533 587 111232 111285 F 55 90.91 1394 reject_low 60 ALIGNMENT 299 Y12-7a15.p1k chr02 596 958 35848 36213 F 363 95.87 1394 reject_low 29 ALIGNMENT 299 Y12-7a15.p1k chr10 958 596 203324 203689 C 363 95.87 1394 reject_low 32 ALIGNMENT 0 Y12-7a15.p1k chr14 806 62 96609 96608 C 745 0.00 1394 reject_low 45 ALIGNMENT 0 Y12-7a15.p1k chr02 62 595 35848 35847 F 534 0.00 1394 reject_low 29 ALIGNMENT 0 Y12-7a15.p1k chr10 62 486 354459 354458 F 425 0.00 1394 reject_low 46 ALIGNMENT 308 Y12-7a15.p1k chr05 596 958 354356 354721 F 363 96.69 1394 reject_low 27 ALIGNMENT 0 Y12-7a15.p1k chr10 62 958 203704 203703 F 897 0.00 1394 reject_low 44 ALIGNMENT 1038 Y12-7a15.q1k chr12 36 1201 652631 653803 F 1166 97.17 1341 reject_low 23 ALIGNMENT 0 Y12-7a15.p1k chr08 596 852 116533 116532 F 257 0.00 1394 reject_low 50 ALIGNMENT 1048 Y12-7a15.q1k chr12 1201 36 218027 219197 C 1166 97.43 1341 reject_low 13 ALIGNMENT 1051 Y12-7a15.q1k chr07 1201 36 564789 565959 C 1166 97.51 1341 reject_low 7 ALIGNMENT 0 Y12-7a15.p1k chr08 483 62 133997 133996 C 422 0.00 1394 reject_low 47 ALIGNMENT 0 Y12-7a15.p1k chr08 62 486 91772 91771 F 425 0.00 1394 reject_low 51 ALIGNMENT 0 Y12-7a15.p1k chr10 595 62 197835 197834 C 534 0.00 1394 reject_low 31 ALIGNMENT 60 Y12-7a15.p1k chr10 487 587 203713 203811 F 101 89.11 1394 reject_low 54 ALIGNMENT 37 Y12-7a15.p1k chr14 981 1055 562057 562132 F 75 86.67 1394 reject_low 48 ALIGNMENT 1042 Y12-7a15.q1k chr10 36 1201 474186 475356 F 1166 97.26 1341 reject_low 21 ALIGNMENT 0 Y12-7a15.p1k chr09 62 486 197145 197144 F 425 0.00 1394 reject_low 59 ALIGNMENT 1048 Y12-7a15.q1k chr13 36 1201 185973 187143 F 1166 97.43 1341 reject_low 14 ALIGNMENT 45 Y12-7a15.p1k chr09 487 546 197145 197204 F 60 95.00 1394 reject_low 59 ALIGNMENT 293 Y12-7a15.p1k chr16 596 958 436887 437252 F 363 95.32 1394 reject_low 36 ALIGNMENT 62 Y12-7a15.p1k chr15 487 587 704073 704172 F 101 89.11 1394 reject_low 52 ALIGNMENT 0 Y12-7a15.p1k chr08 588 852 91871 91870 F 265 0.00 1394 reject_low 51 ALIGNMENT 0 Y12-7a15.p1k chr08 592 62 91761 91760 C 531 0.00 1394 reject_low 34 ALIGNMENT 0 Y12-7a15.p1k chr14 596 852 96727 96726 F 257 0.00 1394 reject_low 1 ALIGNMENT 1027 Y12-7a15.q1k chr16 1201 36 853571 854741 C 1166 96.83 1341 reject_low 24 ALIGNMENT 0 Y12-7a15.p1k chr15 62 958 704064 704063 F 897 0.00 1394 reject_low 42 ALIGNMENT 0 Y12-7a15.p1k chr05 486 62 354838 354837 C 425 0.00 1394 reject_low 58 ALIGNMENT 0 Y12-7a15.p1k chr08 588 852 133297 133296 F 265 0.00 1394 reject_low 57 ALIGNMENT 49 Y12-7a15.p1k chr15 959 1055 704064 704163 F 97 87.63 1394 reject_low 42 ALIGNMENT 90 Y12-7a15.p1k chr01 487 595 160248 160356 F 109 95.41 1394 reject_low 2 ALIGNMENT 0 Y12-7a15.p1k chr07 588 852 111285 111284 F 265 0.00 1394 reject_low 60 ALIGNMENT 1051 Y12-7a15.q1k chr15 36 1201 119511 120681 F 1166 97.51 1341 reject_low 8 ALIGNMENT 0 Y12-7a15.p1k chr05 852 575 354753 354752 C 278 0.00 1394 reject_low 58 ALIGNMENT 68 Y12-7a15.p1k chr08 487 587 91772 91871 F 101 91.09 1394 reject_low 51 ALIGNMENT 1048 Y12-7a15.q1k chr08 1201 36 546550 547720 C 1166 97.43 1341 reject_low 12 ALIGNMENT 1057 Y12-7a15.q1k chr02 36 1201 222845 224015 F 1166 97.68 1341 reject_low 3 ALIGNMENT 0 Y12-7a15.p1k chr07 593 62 111232 111231 C 532 0.00 1394 reject_low 28 ALIGNMENT 0 Y12-7a15.p1k chr14 588 852 562141 562140 F 265 0.00 1394 reject_low 56 ALIGNMENT 90 Y12-7a15.p1k chr01 487 595 165836 165944 F 109 95.41 1394 reject_low 49 ALIGNMENT 0 Y12-7a15.p1k chr13 62 595 808536 808535 F 534 0.00 1394 reject_low 26 ALIGNMENT 307 Y12-7a15.p1k chr02 590 958 643477 643848 F 369 96.21 1394 reject_low 25 ALIGNMENT 1044 Y12-7a15.q1k chr01 1201 36 163184 164355 C 1166 97.34 1341 reject_low 2 ALIGNMENT 1048 Y12-7a15.q1k chr04 1201 36 881240 882410 C 1166 97.43 1341 reject_low 10 ALIGNMENT 309 Y12-7a15.p1k chr13 596 958 808536 808900 F 363 96.69 1394 reject_low 26 ALIGNMENT 22 Y12-7a15.p1k chr07 1011 1055 111232 111276 F 45 86.67 1394 reject_low 55 ALIGNMENT 288 Y12-7a15.p1k chr04 958 596 437151 437515 C 363 94.77 1394 reject_low 39 ALIGNMENT 1051 Y12-7a15.q1k chr05 1201 36 446338 447508 C 1166 97.51 1341 reject_low 6 ALIGNMENT 0 Y12-7a15.p1k chr14 62 980 562057 562056 F 919 0.00 1394 reject_low 48 ALIGNMENT 826 Y12-7a15.p1k chr14 26 958 631547 632486 F 933 97.32 1394 accept 0 ALIGNMENT 293 Y12-7a15.p1k chr16 596 958 442739 443104 F 363 95.32 1394 reject_low 37 ALIGNMENT 0 Y12-7a15.p1k chr14 62 486 96619 96618 F 425 0.00 1394 reject_low 1 ALIGNMENT 0 Y12-7a15.p1k chr10 62 486 203713 203712 F 425 0.00 1394 reject_low 54 ALIGNMENT 0 Y12-7a15.p1k chr08 62 498 133209 133208 F 437 0.00 1394 reject_low 57 ALIGNMENT 1045 Y12-7a15.q1k chr13 1201 36 375642 376812 C 1166 97.34 1341 reject_low 17 ALIGNMENT 239 Y12-7a15.p1k chr15 958 675 703778 704063 C 284 96.13 1394 reject_low 41 ALIGNMENT 0 Y12-7a15.p1k chr08 852 596 133886 133885 C 257 0.00 1394 reject_low 47 ALIGNMENT 0 Y12-7a15.p1k chr01 596 852 160356 160355 F 257 0.00 1394 reject_low 2 ALIGNMENT 1054 Y12-7a15.q1k chr13 1201 36 359944 361114 C 1166 97.60 1341 reject_low 4 ALIGNMENT 1045 Y12-7a15.q1k chr14 36 1201 520969 522139 F 1166 97.34 1341 reject_low 18 ALIGNMENT 86 Y12-7a15.p1k chr08 595 484 133885 133996 C 112 93.75 1394 reject_low 47 ALIGNMENT 0 Y12-7a15.p1k chr10 588 852 203811 203810 F 265 0.00 1394 reject_low 54 ALIGNMENT 0 Y12-7a15.p1k chr13 595 62 504141 504140 C 534 0.00 1394 reject_low 33 ALIGNMENT 0 Y12-7a15.p1k chr15 852 572 703671 703670 C 281 0.00 1394 reject_low 53 ALIGNMENT 290 Y12-7a15.p1k chr08 958 596 85540 85905 C 363 95.04 1394 reject_low 38 ALIGNMENT 0 Y12-7a15.p1k chr15 588 852 704172 704171 F 265 0.00 1394 reject_low 52 ALIGNMENT 0 Y12-7a15.p1k chr10 596 852 354567 354566 F 257 0.00 1394 reject_low 46 ALIGNMENT 0 Y12-7a15.p1k chr07 62 532 111232 111231 F 471 0.00 1394 reject_low 60 ALIGNMENT 293 Y12-7a15.p1k chr14 958 596 561613 561978 C 363 95.32 1394 reject_low 35 ALIGNMENT 1048 Y12-7a15.q1k chr13 36 1201 198140 199310 F 1166 97.43 1341 reject_low 15 ALIGNMENT 1045 Y12-7a15.q1k chr10 36 1201 479770 480940 F 1166 97.34 1341 reject_low 16 ALIGNMENT 1051 Y12-7a15.q1k chr16 1201 36 807583 808753 C 1166 97.51 1341 reject_low 9 ALIGNMENT 1051 Y12-7a15.q1k chr14 1201 36 99550 100720 C 1166 97.51 1341 reject_low 1 ALIGNMENT 48 Y12-7a15.p1k chr08 958 1055 91762 91862 F 98 86.73 1394 reject_low 43 ALIGNMENT 301 Y12-7a15.p1k chr07 958 594 110864 111231 C 365 95.89 1394 reject_low 28 ALIGNMENT 299 Y12-7a15.p1k chr09 596 958 196650 197015 F 363 95.87 1394 reject_low 30 ALIGNMENT 48 Y12-7a15.p1k chr08 499 587 133209 133297 F 89 86.52 1394 reject_low 57 ALIGNMENT 99 Y12-7a15.p1k chr10 487 595 354459 354567 F 109 98.17 1394 reject_low 46 ALIGNMENT 46 Y12-7a15.p1k chr05 574 487 354752 354837 C 88 87.50 1394 reject_low 58 ALIGNMENT 285 Y12-7a15.p1k chr07 596 958 931174 931538 F 363 94.49 1394 reject_low 40 ALIGNMENT 0 Y12-7a15.p1k chr02 62 589 643477 643476 F 528 0.00 1394 reject_low 25 ALIGNMENT 0 Y12-7a15.p1k chr09 547 852 197204 197203 F 306 0.00 1394 reject_low 59 ALIGNMENT 299 Y12-7a15.p1k chr13 958 596 503775 504140 C 363 95.87 1394 reject_low 33 ALIGNMENT 87 Y12-7a15.p1k chr08 487 595 116425 116533 F 109 94.50 1394 reject_low 50 ALIGNMENT 0 Y12-7a15.p1k chr15 62 486 704073 704072 F 425 0.00 1394 reject_low 52 ALIGNMENT 296 Y12-7a15.p1k chr08 958 593 91392 91760 C 366 95.36 1394 reject_low 34 ALIGNMENT 1048 Y12-7a15.q1k chr04 1201 36 989661 990831 C 1166 97.43 1341 reject_low 11 ALIGNMENT 0 Y12-7a15.p1k chr16 62 595 436887 436886 F 534 0.00 1394 reject_low 36 ALIGNMENT 0 Y12-7a15.p1k chr09 62 595 196650 196649 F 534 0.00 1394 reject_low 30 ALIGNMENT 0 Y12-7a15.p1k chr01 596 852 165944 165943 F 257 0.00 1394 reject_low 49 ALIGNMENT 1045 Y12-7a15.q1k chr16 36 1201 58260 59430 F 1166 97.34 1341 reject_low 19 ALIGNMENT 0 Y12-7a15.p1k chr08 62 486 116425 116424 F 425 0.00 1394 reject_low 50 ALIGNMENT 0 Y12-7a15.p1k chr15 486 62 703755 703754 C 425 0.00 1394 reject_low 53 ALIGNMENT 63 Y12-7a15.p1k chr15 571 487 703670 703754 C 85 92.94 1394 reject_low 53 ALIGNMENT 0 Y12-7a15.p1k chr14 62 492 562049 562048 F 431 0.00 1394 reject_low 56 ALIGNMENT 1041 Y12-7a15.q1k chr16 36 1201 846217 847390 F 1166 97.26 1341 reject_low 22 ALIGNMENT 945 Y12-7a16.q1k chr11 1170 38 252782 253929 C 1133 95.41 1302 accept 0 ALIGNMENT 981 Y12-7a16.p1k chr11 19 1169 247936 249104 F 1151 95.74 1419 accept 0 ALIGNMENT 946 Y12-7a17.p1k chr04 1130 20 970730 971854 C 1111 96.67 1385 accept 0 ALIGNMENT 933 Y12-7a17.q1k chr04 36 1181 966970 968136 F 1146 95.81 1287 accept 0 ALIGNMENT 1021 Y12-7a18.p1k chr05 1199 19 356207 357397 C 1181 96.61 1410 accept 0 ALIGNMENT 966 Y12-7a18.q1k chr05 30 1278 350726 351990 F 1249 93.67 1324 accept 0 ALIGNMENT 1042 Y12-7a19.p1k chr11 23 1220 559569 560769 F 1198 96.58 1420 accept 0 ALIGNMENT 996 Y12-7a19.q1k chr11 1280 39 562837 564063 C 1242 95.65 1297 accept 0 ALIGNMENT 450 Y12-7a22.p1k chr11 23 619 192717 193314 F 597 93.13 1397 accept 0 ALIGNMENT 913 Y12-7a22.q1k chr11 1148 32 196428 197543 C 1117 95.34 1260 accept 0 ALIGNMENT 678 Y12-7b02.p1k chr04 72 1005 1506633 1507559 F 934 91.97 1454 accept 0 ALIGNMENT 396 Y12-7b03.p1k chr04 159 773 343410 344019 F 615 89.11 1536 accept 0 ALIGNMENT 728 Y12-7b04.p1k chr02 21 959 761587 762513 F 939 94.57 1666 accept 0 ALIGNMENT 610 Y12-7b04.q1k chr02 871 42 764712 765539 C 830 92.41 1391 accept 0 ALIGNMENT 165 Y12-7b05.p1k chr04 1132 841 1022824 1023130 C 292 88.70 1420|0,3 accept 0 ALIGNMENT 0 Y12-7b05.p1k chr04 843 844 1023128 1023473 C 0 0.00 1420 accept 0 ALIGNMENT 987 Y12-7b05.q1k chr04 34 1201 1019266 1020443 F 1168 96.06 1334 accept 0 ALIGNMENT 794 Y12-7b05.p1k chr04 846 20 1023471 1024298 C 827 99.64 1420|3,0 accept 0 ALIGNMENT 970 Y12-7b06.q1k chr10 35 1200 158370 159532 F 1166 95.28 1340 accept 0 ALIGNMENT 1016 Y12-7b06.p1k chr10 1151 20 162411 163555 C 1132 97.26 1404 accept 0 ALIGNMENT 675 Y12-7b07.q1k chr08 33 857 413658 414476 F 825 96.12 1432 accept 0 ALIGNMENT 781 Y12-7b07.p1k chr08 972 21 416961 417898 C 952 95.80 1613 accept 0 ALIGNMENT 987 Y12-7b08.q1k chr07 32 1192 933038 934218 F 1161 96.30 1330 accept 0 ALIGNMENT 1029 Y12-7b08.p1k chr07 1185 20 937226 938400 C 1166 95.97 1450 accept 0 ALIGNMENT 968 Y12-7b09.q1k chr15 36 1134 999188 1000297 F 1099 97.09 1310 accept 0 ALIGNMENT 943 Y12-7b09.p1k chr15 1087 24 1002280 1003354 C 1064 97.27 1410 accept 0 ALIGNMENT 979 Y12-7b10.p1k chr04 27 1121 836505 837612 F 1095 97.08 1428 accept 0 ALIGNMENT 914 Y12-7b10.q1k chr04 1179 32 839505 840674 C 1148 94.69 1318 accept 0 ALIGNMENT 943 Y12-7b11.q1k chr15 1109 41 133520 134603 C 1069 97.29 1289 accept 0 ALIGNMENT 911 Y12-7b11.p1k chr15 25 1035 130395 131418 F 1011 97.82 1385 accept 0 ALIGNMENT 374 Y12-7b12.p1k chr14 1142 496 752656 753311 C 647 86.40 1420 reject_low 2 ALIGNMENT 186 Y12-7b12.p1k chr03 971 500 300810 301287 C 472 80.30 1420 reject_low 3 ALIGNMENT 86 Y12-7b12.p1k chr02 1036 491 189282 189831 C 546 72.16 1420 reject_low 4 ALIGNMENT 0 Y12-7b12.p1k chr02 130 62 190198 190197 C 69 0.00 1420 reject_low 4 ALIGNMENT 951 Y12-7b12.p1k chr09 24 1165 12708 13862 F 1142 95.18 1420 ambiguous_tel 1 ALIGNMENT 100 Y12-7b12.q1k chr02 635 1130 187071 187565 F 496 73.79 1348 reject_low 4 ALIGNMENT 30 Y12-7b12.p1k chr02 230 131 190098 190197 C 100 78.00 1420 reject_low 4 ALIGNMENT 1062 Y12-7b12.q1k chr10 1326 44 15215 16509 C 1283 95.17 1348 ambiguous_tel 0 ALIGNMENT 0 Y12-7b12.p1k chr03 499 62 301288 301287 C 438 0.00 1420 reject_low 3 ALIGNMENT 509 Y12-7b12.q1k chr14 415 1290 750336 751219 F 876 86.64 1348 reject_low 2 ALIGNMENT 0 Y12-7b12.q1k chr14 62 414 750336 750335 F 353 0.00 1348 reject_low 2 ALIGNMENT 1059 Y12-7b12.q1k chr09 1326 44 15232 16526 C 1283 95.09 1348 ambiguous_tel 1 ALIGNMENT 951 Y12-7b12.p1k chr10 24 1165 12691 13845 F 1142 95.18 1420 ambiguous_tel 0 ALIGNMENT 0 Y12-7b12.q1k chr02 62 634 187071 187070 F 573 0.00 1348 reject_low 4 ALIGNMENT 0 Y12-7b12.p1k chr14 495 62 753312 753311 C 434 0.00 1420 reject_low 2 ALIGNMENT 0 Y12-7b12.p1k chr02 490 231 189832 190097 C 260 0.00 1420 reject_low 4 ALIGNMENT 852 Y12-7b13.q1k chr12 32 1067 466886 467932 F 1036 95.95 1296 reject_low 1 ALIGNMENT 0 Y12-7b13.p1k chr12 92 62 490544 490543 C 31 0.00 1453 reject_low 3 ALIGNMENT 852 Y12-7b13.q1k chr12 32 1067 457749 458795 F 1036 95.95 1296 accept 0 ALIGNMENT 1006 Y12-7b13.p1k chr12 1221 17 451421 452653 C 1205 95.19 1453 reject_low 2 ALIGNMENT 1008 Y12-7b13.p1k chr12 1268 17 460506 461790 C 1252 94.33 1453 accept 0 ALIGNMENT 757 Y12-7b13.p1k chr12 882 93 489754 490543 C 790 98.73 1453 reject_low 3 ALIGNMENT 0 Y12-7b15.q1k chr15 926 62 226681 226680 C 865 0.00 1356 reject_low 13 ALIGNMENT 58 Y12-7b15.q1k chr15 997 927 226609 226680 C 71 94.37 1356 reject_low 13 ALIGNMENT 0 Y12-7b15.q1k chr13 927 62 183969 183968 C 866 0.00 1356 reject_low 14 ALIGNMENT 58 Y12-7b15.q1k chr04 927 997 83548 83619 F 71 95.77 1356 reject_low 11 ALIGNMENT 59 Y12-7b15.q1k chr15 928 1006 282164 282243 F 79 93.67 1356 reject_low 3 ALIGNMENT 925 Y12-7b15.q1k chr10 1154 40 396485 397601 C 1115 95.61 1356 accept 0 ALIGNMENT 0 Y12-7b15.q1k chr07 62 912 845639 845638 F 851 0.00 1356 reject_low 1 ALIGNMENT 60 Y12-7b15.q1k chr07 913 997 845639 845724 F 85 91.76 1356 reject_low 1 ALIGNMENT 0 Y12-7b15.q1k chr16 62 925 860373 860372 F 864 0.00 1356 reject_low 10 ALIGNMENT 0 Y12-7b15.q1k chr04 62 926 992825 992824 F 865 0.00 1356 reject_low 12 ALIGNMENT 0 Y12-7b15.q1k chr10 62 922 531737 531736 F 861 0.00 1356 reject_low 7 ALIGNMENT 57 Y12-7b15.q1k chr13 998 928 183897 183968 C 71 95.77 1356 reject_low 14 ALIGNMENT 62 Y12-7b15.q1k chr05 997 923 61890 61965 C 75 94.67 1356 reject_low 5 ALIGNMENT 0 Y12-7b15.q1k chr03 926 62 142770 142769 C 865 0.00 1356 reject_low 6 ALIGNMENT 59 Y12-7b15.q1k chr16 926 997 860373 860445 F 72 95.83 1356 reject_low 10 ALIGNMENT 0 Y12-7b15.q1k chr04 62 926 83548 83547 F 865 0.00 1356 reject_low 11 ALIGNMENT 0 Y12-7b15.q1k chr15 62 927 282164 282163 F 866 0.00 1356 reject_low 3 ALIGNMENT 0 Y12-7b15.q1k chr16 62 927 572266 572265 F 866 0.00 1356 reject_low 15 ALIGNMENT 60 Y12-7b15.q1k chr02 997 925 197632 197705 C 73 95.89 1356 reject_low 8 ALIGNMENT 59 Y12-7b15.q1k chr10 923 997 531737 531812 F 75 94.67 1356 reject_low 7 ALIGNMENT 0 Y12-7b15.q1k chr06 924 62 181040 181039 C 863 0.00 1356 reject_low 2 ALIGNMENT 1019 Y12-7b15.p1k chr10 22 1219 393167 394382 F 1198 96.49 1486 accept 0 ALIGNMENT 62 Y12-7b15.q1k chr06 1006 925 180957 181039 C 82 93.90 1356 reject_low 2 ALIGNMENT 0 Y12-7b15.q1k chr05 922 62 61966 61965 C 861 0.00 1356 reject_low 5 ALIGNMENT 0 Y12-7b15.q1k chr02 924 62 197706 197705 C 863 0.00 1356 reject_low 8 ALIGNMENT 58 Y12-7b15.q1k chr04 927 997 992825 992896 F 71 95.77 1356 reject_low 12 ALIGNMENT 0 Y12-7b15.q1k chr07 922 62 931032 931031 C 861 0.00 1356 reject_low 4 ALIGNMENT 56 Y12-7b15.q1k chr16 928 997 572266 572336 F 70 95.71 1356 reject_low 15 ALIGNMENT 63 Y12-7b15.q1k chr07 998 923 930955 931031 C 76 96.05 1356 reject_low 4 ALIGNMENT 60 Y12-7b15.q1k chr03 999 927 142696 142769 C 73 95.89 1356 reject_low 6 ALIGNMENT 0 Y12-7b15.q1k chr06 62 925 162220 162219 F 864 0.00 1356 reject_low 9 ALIGNMENT 59 Y12-7b15.q1k chr06 926 997 162220 162292 F 72 95.83 1356 reject_low 9 ALIGNMENT 893 Y12-7b16.q1k chr13 39 1051 14633 15660 F 1013 97.14 1265 accept 0 ALIGNMENT 948 Y12-7b16.p1k chr13 1067 19 18831 19895 C 1049 98.19 1380 accept 0 ALIGNMENT 810 Y12-7b17.p1k chr02 19 992 123570 124568 F 974 96.10 1268 accept 0 ALIGNMENT 933 Y12-7b17.q1k chr02 1100 37 126738 127813 C 1064 97.74 1268 accept 0 ALIGNMENT 317 Y12-7b18.p1k chr05 423 29 63695 64085 C 395 94.18 1350 reject_low 15 ALIGNMENT 56 Y12-7b18.p1k chr03 413 216 289999 290193 C 198 78.28 1350 reject_low 20 ALIGNMENT 906 Y12-7b18.q1k chr12 1124 34 17526 18629 C 1091 94.96 1286 accept 0 ALIGNMENT 20 Y12-7b18.p1k chr15 945 916 1082268 1082298 C 30 93.33 1350 reject_low 17 ALIGNMENT 0 Y12-7b18.p1k chr03 215 62 290194 290193 C 154 0.00 1350 reject_low 20 ALIGNMENT 767 Y12-7b18.p1k chr12 24 1073 13082 14151 F 1050 92.00 1350 accept 0 ALIGNMENT 482 Y12-7b18.p1k chr11 29 863 1816 2662 F 835 86.47 1350 reject_low 10 ALIGNMENT 0 Y12-7b18.p1k chr16 767 915 8692 8842 F 149 0.00 1350 reject_low 18 ALIGNMENT 20 Y12-7b18.p1k chr16 916 945 8843 8873 F 30 93.33 1350 reject_low 18 ALIGNMENT 27 Y12-7b18.p1k chr04 748 634 1522867 1522980 C 115 76.52 1350 reject_low 21 ALIGNMENT 631 Y12-7b18.p1k chr10 25 863 8776 9619 F 839 92.13 1350 reject_low 5 ALIGNMENT 367 Y12-7b18.p1k chr04 420 29 1523198 1523589 C 392 98.21 1350 reject_low 21 ALIGNMENT 321 Y12-7b18.p1k chr16 36 766 7948 8691 F 731 82.08 1350 reject_low 18 ALIGNMENT 206 Y12-7b18.p1k chr01 25 396 176653 177031 F 372 85.75 1350 reject_low 16 ALIGNMENT 0 Y12-7b18.p1k chr05 855 424 63696 63695 C 432 0.00 1350 reject_low 15 ALIGNMENT 0 Y12-7b18.p1k chr02 855 432 809007 809006 C 424 0.00 1350 reject_low 14 ALIGNMENT 0 Y12-7b18.p1k chr04 855 749 1522868 1522867 C 107 0.00 1350 reject_low 21 ALIGNMENT 576 Y12-7b18.p1k chr14 860 24 781439 782281 C 837 90.20 1350 reject_low 8 ALIGNMENT 321 Y12-7b18.p1k chr15 766 36 1082450 1083193 C 731 82.08 1350 reject_low 17 ALIGNMENT 342 Y12-7b18.p1k chr07 431 29 1080267 1080669 C 403 95.29 1350 reject_low 13 ALIGNMENT 0 Y12-7b18.p1k chr01 397 855 177031 177030 F 459 0.00 1350 reject_low 16 ALIGNMENT 631 Y12-7b18.p1k chr09 25 863 8793 9636 F 839 92.13 1350 reject_low 4 ALIGNMENT 330 Y12-7b18.p1k chr02 431 29 809006 809408 C 403 94.29 1350 reject_low 14 ALIGNMENT 623 Y12-7b18.p1k chr07 25 863 6290 7132 F 839 92.01 1350 reject_low 6 ALIGNMENT 485 Y12-7b18.p1k chr09 863 36 433445 434284 C 828 86.71 1350 reject_low 9 ALIGNMENT 20 Y12-7b18.p1k chr13 945 898 922076 922126 C 48 85.42 1350 reject_low 19 ALIGNMENT 0 Y12-7b18.p1k chr03 855 414 290000 289999 C 442 0.00 1350 reject_low 20 ALIGNMENT 594 Y12-7b18.p1k chr02 24 856 7604 8445 F 833 91.12 1350 reject_low 7 ALIGNMENT 0 Y12-7b18.p1k chr15 915 767 1082299 1082449 C 149 0.00 1350 reject_low 17 ALIGNMENT 370 Y12-7b18.p1k chr15 25 681 11548 12209 F 657 86.30 1350 reject_low 12 ALIGNMENT 456 Y12-7b18.p1k chr03 863 36 307313 308156 C 828 85.63 1350 reject_low 11 ALIGNMENT 615 Y12-7b18.p1k chr12 862 19 1062440 1063285 C 844 91.71 1350 reject_low 3 ALIGNMENT 0 Y12-7b18.p1k chr07 855 432 1080268 1080267 C 424 0.00 1350 reject_low 13 ALIGNMENT 533 Y12-7b18.p1k chr08 29 998 11926 12914 F 970 85.88 1350 reject_low 1 ALIGNMENT 670 Y12-7b18.p1k chr01 25 863 1807 2647 F 839 93.56 1350 reject_low 2 ALIGNMENT 0 Y12-7b18.p1k chr15 682 855 12209 12208 F 174 0.00 1350 reject_low 12 ALIGNMENT 305 Y12-7b18.p1k chr13 766 36 922257 922998 C 731 81.53 1350 reject_low 19 ALIGNMENT 0 Y12-7b18.p1k chr13 897 767 922127 922256 C 131 0.00 1350 reject_low 19 ALIGNMENT 0 Y12-7b18.p1k chr04 633 421 1522981 1523197 C 213 0.00 1350 reject_low 21 ALIGNMENT 0 Y12-7b21.q1k chr08 62 339 116096 116095 F 278 0.00 1224 reject_low 3 ALIGNMENT 77 Y12-7b21.q1k chr03 419 340 295479 295558 C 80 98.75 1224 reject_low 6 ALIGNMENT 0 Y12-7b21.q1k chr10 62 345 59100 59099 F 284 0.00 1224 reject_low 9 ALIGNMENT 77 Y12-7b21.q1k chr02 418 339 266378 266457 C 80 98.75 1224 reject_low 5 ALIGNMENT 832 Y12-7b21.q1k chr09 1157 37 174280 175440 C 1121 92.95 1224 accept 0 ALIGNMENT 0 Y12-7b21.q1k chr15 419 835 354112 354111 F 417 0.00 1224 reject_low 8 ALIGNMENT 76 Y12-7b21.q1k chr15 340 418 354034 354112 F 79 98.73 1224 reject_low 8 ALIGNMENT 86 Y12-7b21.q1k chr09 423 338 325741 325826 C 86 100.00 1224 reject_low 10 ALIGNMENT 75 Y12-7b21.q1k chr14 338 422 560684 560770 F 85 96.47 1224 reject_low 1 ALIGNMENT 74 Y12-7b21.q1k chr10 346 419 59100 59173 F 74 100.00 1224 reject_low 9 ALIGNMENT 0 Y12-7b21.q1k chr03 835 420 295480 295479 C 416 0.00 1224 reject_low 6 ALIGNMENT 0 Y12-7b21.q1k chr04 62 339 434254 434253 F 278 0.00 1224 reject_low 7 ALIGNMENT 0 Y12-7b21.q1k chr15 835 420 113801 113800 C 416 0.00 1224 reject_low 2 ALIGNMENT 0 Y12-7b21.q1k chr02 338 62 266458 266457 C 277 0.00 1224 reject_low 5 ALIGNMENT 0 Y12-7b21.q1k chr14 423 835 560770 560769 F 413 0.00 1224 reject_low 1 ALIGNMENT 0 Y12-7b21.q1k chr10 420 835 59173 59172 F 416 0.00 1224 reject_low 9 ALIGNMENT 0 Y12-7b21.q1k chr08 421 835 116176 116175 F 415 0.00 1224 reject_low 3 ALIGNMENT 0 Y12-7b21.q1k chr02 835 419 266379 266378 C 417 0.00 1224 reject_low 5 ALIGNMENT 0 Y12-7b21.q1k chr04 420 835 434334 434333 F 416 0.00 1224 reject_low 7 ALIGNMENT 76 Y12-7b21.q1k chr14 420 338 104803 104886 C 83 97.59 1224 reject_low 4 ALIGNMENT 0 Y12-7b21.q1k chr15 337 62 113882 113881 C 276 0.00 1224 reject_low 2 ALIGNMENT 78 Y12-7b21.q1k chr08 340 420 116096 116176 F 81 98.77 1224 reject_low 3 ALIGNMENT 0 Y12-7b21.q1k chr14 835 421 104804 104803 C 415 0.00 1224 reject_low 4 ALIGNMENT 0 Y12-7b21.q1k chr09 747 424 325420 325740 C 324 0.00 1224 reject_low 10 ALIGNMENT 0 Y12-7b21.q1k chr14 337 62 104887 104886 C 276 0.00 1224 reject_low 4 ALIGNMENT 34 Y12-7b21.q1k chr09 865 748 325302 325419 C 118 76.27 1224 reject_low 10 ALIGNMENT 0 Y12-7b21.q1k chr14 62 337 560684 560683 F 276 0.00 1224 reject_low 1 ALIGNMENT 895 Y12-7b21.p1k chr09 20 1044 171606 172643 F 1025 97.07 1291 accept 0 ALIGNMENT 78 Y12-7b21.q1k chr15 419 338 113800 113881 C 82 98.78 1224 reject_low 2 ALIGNMENT 0 Y12-7b21.q1k chr09 337 62 325827 325826 C 276 0.00 1224 reject_low 10 ALIGNMENT 0 Y12-7b21.q1k chr15 62 339 354034 354033 F 278 0.00 1224 reject_low 8 ALIGNMENT 0 Y12-7b21.q1k chr03 339 62 295559 295558 C 278 0.00 1224 reject_low 6 ALIGNMENT 76 Y12-7b21.q1k chr04 340 419 434254 434334 F 80 98.75 1224 reject_low 7 ALIGNMENT 923 Y12-7b22.q1k chr12 1128 33 613870 614975 C 1096 96.44 1209 accept 0 ALIGNMENT 1007 Y12-7b22.p1k chr12 23 1178 610637 611803 F 1156 96.54 1359 accept 0 ALIGNMENT 916 Y12-7b23.p1k chr15 1164 28 1065142 1066287 C 1137 95.16 1297 accept 0 ALIGNMENT 925 Y12-7b23.q1k chr15 40 1197 1061510 1062676 F 1158 93.87 1201 accept 0 ALIGNMENT 275 Y12-7c01.p1k chr05 90 629 10107 10645 F 540 85.37 1460 accept 0 ALIGNMENT 389 Y12-7c04.p1k chr15 1143 631 219924 220446 C 513 93.18 1422|0,4 accept 0 ALIGNMENT 0 Y12-7c04.p1k chr15 634 635 220443 220732 C 0 0.00 1422 accept 0 ALIGNMENT 623 Y12-7c04.q1k chr15 83 909 216941 217760 F 827 93.59 1263|11,0 accept 0 ALIGNMENT 272 Y12-7c04.p1k chr15 638 229 220729 221134 C 410 89.27 1422|4,0 accept 0 ALIGNMENT 82 Y12-7c04.q1k chr15 2 104 216826 216930 F 103 98.06 1263|0,11 accept 0 ALIGNMENT 0 Y12-7c04.q1k chr15 94 93 216920 216951 F 0 0.00 1263 accept 0 ALIGNMENT 964 Y12-7c05.p1k chr04 1122 25 1456860 1457969 C 1098 97.63 1450 accept 0 ALIGNMENT 1015 Y12-7c05.q1k chr04 32 1355 1452717 1454055 F 1324 93.58 1390 accept 0 ALIGNMENT 981 Y12-7c06.q1k chr02 39 1178 762123 763277 F 1140 96.58 1352 accept 0 ALIGNMENT 906 Y12-7c06.p1k chr02 1039 22 765681 766711 C 1018 97.45 1378 accept 0 ALIGNMENT 887 Y12-7c07.q1k chr02 29 1112 630458 631548 F 1084 95.20 1368 accept 0 ALIGNMENT 971 Y12-7c07.p1k chr02 1205 20 635304 636496 C 1186 94.69 1497 accept 0 ALIGNMENT 994 Y12-7c09.p1k chr04 1160 22 996749 997906 C 1139 97.01 1440 accept 0 ALIGNMENT 1013 Y12-7c09.q1k chr04 38 1187 994055 995215 F 1150 97.30 1326 accept 0 ALIGNMENT 992 Y12-7c10.q1k chr07 1209 35 194576 195751 C 1175 95.49 1362 accept 0 ALIGNMENT 881 Y12-7c10.p1k chr07 18 1093 191378 192447 F 1076 95.17 1410 accept 0 ALIGNMENT 1038 Y12-7c11.q1k chr14 43 1251 367737 368958 F 1209 96.61 1361 accept 0 ALIGNMENT 1096 Y12-7c11.p1k chr14 1294 20 369494 370772 C 1275 96.31 1529 accept 0 ALIGNMENT 1015 Y12-7c12.p1k chr10 22 1178 67667 68836 F 1157 96.97 1476 accept 0 ALIGNMENT 982 Y12-7c12.q1k chr10 1207 38 72003 73195 C 1170 96.24 1344 accept 0 ALIGNMENT 315 Y12-7c13.p1k chr12 200 941 454355 455096 F 742 81.54 1448 accept 0 ALIGNMENT 0 Y12-7c15.p1k chr14 187 62 414495 414494 C 126 0.00 1455 reject_low 1 ALIGNMENT 940 Y12-7c15.p1k chr15 1101 19 722968 724052 C 1083 96.12 1455 accept 0 ALIGNMENT 44 Y12-7c15.p1k chr14 255 188 414427 414494 C 68 89.71 1455 reject_low 1 ALIGNMENT 0 Y12-7c15.p1k chr14 791 256 414428 414427 C 536 0.00 1455 reject_low 1 ALIGNMENT 971 Y12-7c15.q1k chr15 28 1204 718776 719960 F 1177 95.50 1326 accept 0 ALIGNMENT 977 Y12-7c16.p1k chr04 27 1172 612802 613952 F 1146 96.25 1440 accept 0 ALIGNMENT 914 Y12-7c16.q1k chr04 1108 37 616600 617689 C 1072 96.18 1300 accept 0 ALIGNMENT 1050 Y12-7c17.q1k chr05 25 1294 124509 125785 F 1270 95.28 1306 accept 0 ALIGNMENT 1027 Y12-7c17.p1k chr05 1197 29 127724 128912 C 1169 97.18 1427 accept 0 ALIGNMENT 937 Y12-7c18.q1k chr04 1131 37 1047084 1048193 C 1095 96.16 1287 accept 0 ALIGNMENT 983 Y12-7c18.p1k chr04 19 1170 1043948 1045116 F 1152 96.96 1392 accept 0 ALIGNMENT 954 Y12-7c19.q1k chr10 1192 40 321754 322909 C 1153 95.06 1304 accept 0 ALIGNMENT 1011 Y12-7c19.p1k chr10 21 1244 318771 320012 F 1224 95.67 1419 accept 0 ALIGNMENT 919 Y12-7c20.p1k chr05 20 1091 120489 121581 F 1072 96.64 1347 accept 0 ALIGNMENT 882 Y12-7c20.q1k chr05 1051 35 123611 124645 C 1017 96.46 1249 accept 0 ALIGNMENT 0 Y12-7c21.p1k chr16 653 62 818558 818557 C 592 0.00 1327 reject_low 1 ALIGNMENT 0 Y12-7c21.p1k chr08 681 933 252940 252939 F 253 0.00 1327 reject_low 7 ALIGNMENT 0 Y12-7c21.p1k chr08 653 933 365474 365473 F 281 0.00 1327 reject_low 6 ALIGNMENT 0 Y12-7c21.p1k chr05 62 597 79215 79214 F 536 0.00 1327 reject_low 5 ALIGNMENT 0 Y12-7c21.p1k chr16 687 933 187425 187424 F 247 0.00 1327 reject_low 8 ALIGNMENT 30 Y12-7c21.p1k chr16 623 684 252240 252301 F 62 90.32 1327 reject_low 4 ALIGNMENT 966 Y12-7c21.q1k chr16 40 1173 815282 816409 F 1134 95.94 1272 accept 0 ALIGNMENT 0 Y12-7c21.p1k chr16 62 590 187330 187329 F 529 0.00 1327 reject_low 8 ALIGNMENT 38 Y12-7c21.p1k chr16 591 680 252244 252333 F 90 90.00 1327 reject_low 2 ALIGNMENT 0 Y12-7c21.p1k chr05 62 630 79215 79214 F 569 0.00 1327 reject_low 9 ALIGNMENT 0 Y12-7c21.p1k chr16 681 933 252333 252332 F 253 0.00 1327 reject_low 2 ALIGNMENT 0 Y12-7c21.p1k chr16 685 933 252301 252300 F 249 0.00 1327 reject_low 4 ALIGNMENT 391 Y12-7c21.p1k chr16 1156 654 818043 818557 C 503 94.83 1327 reject_low 1 ALIGNMENT 20 Y12-7c21.p1k chr16 591 686 187330 187425 F 96 81.25 1327 reject_low 8 ALIGNMENT 21 Y12-7c21.p1k chr08 582 652 365404 365474 F 71 83.10 1327 reject_low 6 ALIGNMENT 29 Y12-7c21.p1k chr05 598 637 79215 79254 F 40 100.00 1327 reject_low 5 ALIGNMENT 543 Y12-7c21.p1k chr16 617 23 818531 819125 C 595 99.33 1327 accept 0 ALIGNMENT 0 Y12-7c21.p1k chr08 688 933 365476 365475 F 246 0.00 1327 reject_low 3 ALIGNMENT 0 Y12-7c21.p1k chr05 678 933 79261 79260 F 256 0.00 1327 reject_low 9 ALIGNMENT 0 Y12-7c21.p1k chr16 933 618 818532 818531 C 316 0.00 1327 accept 0 ALIGNMENT 20 Y12-7c21.p1k chr05 631 677 79215 79261 F 47 89.36 1327 reject_low 9 ALIGNMENT 0 Y12-7c21.p1k chr08 62 590 252851 252850 F 529 0.00 1327 reject_low 7 ALIGNMENT 0 Y12-7c21.p1k chr05 638 933 79254 79253 F 296 0.00 1327 reject_low 5 ALIGNMENT 0 Y12-7c21.p1k chr16 62 622 252240 252239 F 561 0.00 1327 reject_low 4 ALIGNMENT 0 Y12-7c21.p1k chr08 62 580 365370 365369 F 519 0.00 1327 reject_low 3 ALIGNMENT 31 Y12-7c21.p1k chr08 581 687 365370 365476 F 107 82.24 1327 reject_low 3 ALIGNMENT 23 Y12-7c21.p1k chr08 591 680 252851 252940 F 90 84.44 1327 reject_low 7 ALIGNMENT 0 Y12-7c21.p1k chr08 62 581 365404 365403 F 520 0.00 1327 reject_low 6 ALIGNMENT 0 Y12-7c21.p1k chr16 62 590 252244 252243 F 529 0.00 1327 reject_low 2 ALIGNMENT 915 Y12-7c22.q1k chr13 1124 43 515473 516570 C 1082 96.03 1243 accept 0 ALIGNMENT 1020 Y12-7c22.p1k chr13 23 1265 514655 515923 F 1243 95.01 1385 accept 0 ALIGNMENT 745 Y12-7c24.q1k chr13 981 44 515652 516574 C 938 95.20 1397 accept 0 ALIGNMENT 607 Y12-7d03.p1k chr12 24 854 150866 151692 F 831 93.74 1469 accept 0 ALIGNMENT 491 Y12-7d04.q1k chr14 41 757 255017 255732 F 717 90.66 1413 accept 0 ALIGNMENT 0 Y12-7d05.q1k chr10 851 353 608459 608458 C 499 0.00 1332 reject_low 1 ALIGNMENT 918 Y12-7d05.q1k chr16 1092 37 653783 654842 C 1056 96.97 1332 accept 0 ALIGNMENT 953 Y12-7d05.p1k chr16 20 1141 649315 650450 F 1122 96.79 1454 accept 0 ALIGNMENT 194 Y12-7d05.q1k chr10 352 32 608458 608778 C 321 87.23 1332 reject_low 1 ALIGNMENT 217 Y12-7d06.p1k chr01 1076 557 198518 199039 C 520 81.73 1422 accept 0 ALIGNMENT 0 Y12-7d06.q1k chr01 553 844 198664 198663 F 292 0.00 1326 accept 0 ALIGNMENT 358 Y12-7d06.q1k chr01 39 552 198152 198664 F 514 90.86 1326 accept 0 ALIGNMENT 0 Y12-7d06.p1k chr01 556 62 199040 199039 C 495 0.00 1422 accept 0 ALIGNMENT 922 Y12-7d07.q1k chr07 1045 37 536219 537232 C 1009 98.02 1299 ambiguous_trans 19 ALIGNMENT 929 Y12-7d07.q1k chr02 1094 37 259968 261038 C 1058 96.98 1299 ambiguous_trans 11 ALIGNMENT 0 Y12-7d07.q1k chr08 62 580 548719 548718 F 519 0.00 1299 ambiguous_trans 25 ALIGNMENT 933 Y12-7d07.q1k chr10 1045 37 472832 473845 C 1009 98.32 1299 ambiguous_trans 14 ALIGNMENT 0 Y12-7d07.q1k chr08 697 904 548720 548719 F 208 0.00 1299 ambiguous_trans 22 ALIGNMENT 933 Y12-7d07.q1k chr05 37 1045 447849 448862 F 1009 98.32 1299 ambiguous_trans 13 ALIGNMENT 637 Y12-7d07.q1k chr08 37 696 548061 548720 F 660 100.00 1299 ambiguous_trans 22 ALIGNMENT 935 Y12-7d07.q1k chr13 37 1094 377153 378223 F 1058 97.16 1299 ambiguous_trans 8 ALIGNMENT 935 Y12-7d07.q1k chr13 1094 37 184562 185632 C 1058 97.16 1299 ambiguous_trans 7 ALIGNMENT 1049 Y12-7d07.p1k chr14 24 1200 439482 440663 F 1177 97.11 1490 accept 0 ALIGNMENT 938 Y12-7d07.q1k chr04 37 1094 649950 651020 F 1058 97.26 1299 ambiguous_trans 1 ALIGNMENT 510 Y12-7d07.q1k chr13 37 1045 361455 362468 F 1009 84.34 1299 ambiguous_trans 23 ALIGNMENT 930 Y12-7d07.q1k chr16 37 1045 855082 856095 F 1009 98.22 1299 ambiguous_trans 17 ALIGNMENT 406 Y12-7d07.q1k chr08 581 1094 548719 549245 F 514 94.16 1299 ambiguous_trans 25 ALIGNMENT 935 Y12-7d07.q1k chr12 37 1094 219538 220608 F 1058 97.16 1299 ambiguous_trans_ua 6 ALIGNMENT 922 Y12-7d07.q1k chr10 1045 37 478416 479429 C 1009 98.02 1299 ambiguous_trans 20 ALIGNMENT 0 Y12-7d07.q1k chr02 904 884 221659 221658 C 21 0.00 1299 ambiguous_trans 24 ALIGNMENT 933 Y12-7d07.q1k chr13 1045 37 196786 197799 C 1009 98.32 1299 ambiguous_trans 15 ALIGNMENT 932 Y12-7d07.q1k chr16 1094 37 844806 845876 C 1058 97.07 1299 ambiguous_trans 10 ALIGNMENT 938 Y12-7d07.q1k chr04 1094 37 1096160 1097230 C 1058 97.26 1299 ambiguous_trans 2 ALIGNMENT 933 Y12-7d07.q1k chr04 37 1045 991172 992185 F 1009 98.32 1299 ambiguous_trans 12 ALIGNMENT 938 Y12-7d07.q1k chr07 37 1094 821849 822919 F 1058 97.26 1299 ambiguous_trans 4 ALIGNMENT 933 Y12-7d07.q1k chr16 1045 37 56906 57919 C 1009 98.32 1299 ambiguous_trans 16 ALIGNMENT 922 Y12-7d07.q1k chr01 37 1045 164696 165709 F 1009 98.02 1299 ambiguous_trans 18 ALIGNMENT 935 Y12-7d07.q1k chr04 37 1094 882751 883821 F 1058 97.16 1299 ambiguous_trans 5 ALIGNMENT 932 Y12-7d07.q1k chr15 1094 37 595213 596283 C 1058 97.07 1299 ambiguous_trans 9 ALIGNMENT 478 Y12-7d07.q1k chr02 883 37 221658 222504 C 847 86.42 1299 ambiguous_trans 24 ALIGNMENT 938 Y12-7d07.q1k chr07 37 1094 566300 567370 F 1058 97.26 1299 ambiguous_trans 3 ALIGNMENT 922 Y12-7d07.q1k chr16 37 1045 809094 810107 F 1009 98.02 1299 ambiguous_trans 21 ALIGNMENT 1035 Y12-7d08.p1k chr15 1182 24 504389 505556 C 1159 97.33 1452 accept 0 ALIGNMENT 963 Y12-7d08.q1k chr15 37 1189 500624 501782 F 1153 95.84 1348 accept 0 ALIGNMENT 134 Y12-7d09.q1k chr13 483 166 278719 279036 C 318 80.82 1341 reject_low 2 ALIGNMENT 1002 Y12-7d09.p1k chr13 18 1118 277365 278477 F 1101 98.00 1415 accept 0 ALIGNMENT 0 Y12-7d09.q1k chr13 633 484 278569 278718 C 150 0.00 1341 reject_low 2 ALIGNMENT 0 Y12-7d09.q1k chr13 905 792 278412 278411 C 114 0.00 1341 reject_low 2 ALIGNMENT 27 Y12-7d09.q1k chr13 791 634 278411 278568 C 158 73.42 1341 reject_low 2 ALIGNMENT 0 Y12-7d09.q1k chr13 165 62 279037 279036 C 104 0.00 1341 reject_low 2 ALIGNMENT 0 Y12-7d09.p1k chr13 62 579 280837 280836 F 518 0.00 1415 reject_low 1 ALIGNMENT 997 Y12-7d09.q1k chr13 1178 40 280913 282071 C 1139 96.66 1341 accept 0 ALIGNMENT 145 Y12-7d09.p1k chr13 580 944 280837 281203 F 365 80.55 1415 reject_low 1 ALIGNMENT 0 Y12-7d11.p1k chr12 996 997 696978 696957 C 0 0.00 1440 reject_bad_break 0 ALIGNMENT 0 Y12-7d11.p1k chr04 972 62 340321 340320 C 911 0.00 1440 reject_low 1 ALIGNMENT 27 Y12-7d11.p1k chr04 1013 973 340281 340320 C 41 97.56 1440 reject_low 1 ALIGNMENT 979 Y12-7d11.q1k chr12 38 1122 691750 692839 F 1085 97.79 1316 reject_bad_break 0 ALIGNMENT 66 Y12-7d11.p1k chr12 1130 997 696834 696977 C 134 87.31 1440 reject_bad_break 0 ALIGNMENT 908 Y12-7d11.p1k chr12 996 20 696958 697937 C 977 98.77 1440 reject_bad_break 0 ALIGNMENT 969 Y12-7d13.p1k chr04 1116 19 1470842 1471953 C 1098 96.99 1418 accept 0 ALIGNMENT 1014 Y12-7d13.q1k chr04 40 1171 1467997 1469147 F 1132 97.70 1336 accept 0 ALIGNMENT 1027 Y12-7d14.p1k chr04 1214 20 976546 977759 C 1195 96.49 1438 accept_chi 0 ALIGNMENT 975 Y12-7d14.q1k chr07 36 1153 184349 185475 F 1118 97.23 1334 accept_chi 1 ALIGNMENT 1011 Y12-7d15.p1k chr12 19 1175 820182 821347 F 1157 96.89 1444 accept 0 ALIGNMENT 845 Y12-7d15.q1k chr12 915 40 823483 824359 C 876 99.54 1364 accept 0 ALIGNMENT 925 Y12-7d16.q1k chr10 1061 34 501895 502926 C 1028 97.86 1297 accept 0 ALIGNMENT 1023 Y12-7d16.p1k chr10 22 1218 497919 499124 F 1197 95.66 1451 accept 0 ALIGNMENT 1012 Y12-7d18.q1k chr13 1184 38 80024 81182 C 1147 97.30 1293 accept 0 ALIGNMENT 1054 Y12-7d18.p1k chr13 21 1236 75576 76782 F 1216 96.88 1451 accept 0 ALIGNMENT 978 Y12-7d19.p1k chr10 19 1257 266418 267666 F 1239 95.24 1438 accept 0 ALIGNMENT 937 Y12-7d19.q1k chr10 1176 35 268993 270154 C 1142 95.53 1271 accept 0 ALIGNMENT 375 Y12-7d20.p1k chr01 29 781 1819 2555 F 753 85.26 1465 reject_low 1 ALIGNMENT 338 Y12-7d20.p1k chr12 759 29 1062548 1063266 C 731 83.99 1465 reject_low 2 ALIGNMENT 226 Y12-7d20.p1k chr07 438 29 1080267 1080662 C 410 87.56 1465 reject_low 13 ALIGNMENT 217 Y12-7d20.p1k chr02 438 29 809006 809401 C 410 86.83 1465 reject_low 14 ALIGNMENT 70 Y12-7d20.p1k chr12 403 225 94736 94922 C 179 80.45 1465 reject_low 19 ALIGNMENT 108 Y12-7d20.p1k chr01 29 403 176665 177031 F 375 79.20 1465 reject_low 18 ALIGNMENT 243 Y12-7d20.p1k chr04 427 29 1523198 1523582 C 399 89.47 1465 reject_low 11 ALIGNMENT 126 Y12-7d20.p1k chr16 105 457 8021 8371 F 353 81.30 1465 reject_low 17 ALIGNMENT 270 Y12-7d20.p1k chr14 781 29 781528 782268 C 753 81.01 1465 reject_low 6 ALIGNMENT 129 Y12-7d20.p1k chr13 457 29 922575 922998 C 429 79.49 1465 reject_low 20 ALIGNMENT 237 Y12-7d20.p1k chr15 29 510 11560 12028 F 482 85.27 1465 reject_low 9 ALIGNMENT 234 Y12-7d20.p1k chr08 29 510 11933 12410 F 482 85.48 1465 reject_low 10 ALIGNMENT 287 Y12-7d20.p1k chr12 29 781 13095 13837 F 753 81.67 1465 accept 0 ALIGNMENT 301 Y12-7d20.p1k chr07 29 781 6302 7040 F 753 82.20 1465 reject_low 5 ALIGNMENT 323 Y12-7d20.p1k chr10 29 781 8788 9527 F 753 83.27 1465 reject_low 3 ALIGNMENT 208 Y12-7d20.p1k chr05 430 29 63695 64078 C 402 87.06 1465 reject_low 15 ALIGNMENT 281 Y12-7d20.p1k chr09 29 687 8805 9452 F 659 83.16 1465 reject_low 7 ALIGNMENT 305 Y12-7d20.p1k chr02 29 771 7617 8351 F 743 82.64 1465 reject_low 4 ALIGNMENT 147 Y12-7d20.p1k chr03 785 236 307400 307963 C 550 77.45 1465 reject_low 12 ALIGNMENT 281 Y12-7d20.q1k chr12 744 35 17919 18625 C 710 80.42 1299 accept 0 ALIGNMENT 179 Y12-7d20.p1k chr09 785 236 433532 434091 C 550 79.09 1465 reject_low 8 ALIGNMENT 0 Y12-7d20.p1k chr13 675 458 922356 922574 C 218 0.00 1465 reject_low 20 ALIGNMENT 35 Y12-7d20.p1k chr13 774 676 922258 922355 C 99 80.81 1465 reject_low 20 ALIGNMENT 132 Y12-7d20.p1k chr15 457 87 1082770 1083138 C 371 81.13 1465 reject_low 16 ALIGNMENT 1041 Y12-7d21.q1k chr13 1197 36 716522 717684 C 1162 97.50 1264 accept 0 ALIGNMENT 988 Y12-7d21.p1k chr13 29 1303 713333 714634 F 1275 93.88 1367 accept 0 ALIGNMENT 934 Y12-7d23.p1k chr12 23 1080 963733 964809 F 1058 96.88 1301 accept_chi 1 ALIGNMENT 938 Y12-7d23.q1k chr13 1173 39 574562 575706 C 1135 95.15 1177 accept_chi 0 ALIGNMENT 538 Y12-7e02.q1k chr12 794 39 221621 222376 C 756 91.67 1429 accept 0 ALIGNMENT 695 Y12-7e02.p1k chr12 26 942 210456 211363 F 917 93.46 1567 accept 0 ALIGNMENT 759 Y12-7e03.p1k chr12 982 26 465457 466415 C 957 93.73 1372 reject_low 1 ALIGNMENT 857 Y12-7e03.q1k chr12 38 1082 461833 462869 F 1045 94.83 1419 reject_low 1 ALIGNMENT 861 Y12-7e03.q1k chr12 38 1251 452696 453904 F 1214 91.27 1419 accept 0 ALIGNMENT 759 Y12-7e03.p1k chr12 982 26 456320 457278 C 957 93.73 1372 accept 0 ALIGNMENT 968 Y12-7e05.q1k chr03 1207 34 208917 210082 C 1174 94.97 1490 accept 0 ALIGNMENT 997 Y12-7e05.p1k chr03 25 1203 203691 204888 F 1179 96.35 1469 accept 0 ALIGNMENT 29 Y12-7e06.p1k chr12 185 153 9413 9445 C 33 96.97 1471 reject_low 25 ALIGNMENT 0 Y12-7e06.p1k chr02 723 263 4037 4032 C 461 0.00 1471 reject_low 31 ALIGNMENT 854 Y12-7e06.q1k chr12 929 37 1065785 1066678 C 893 99.10 1392 reject_low 26 ALIGNMENT 0 Y12-7e06.p1k chr06 206 186 2925 2914 C 21 0.00 1471 reject_low 29 ALIGNMENT 802 Y12-7e06.q1k chr04 998 37 1526062 1527061 C 962 95.11 1392 reject_low 20 ALIGNMENT 1054 Y12-7e06.p1k chr14 1233 20 3092 4325 C 1214 96.05 1471 reject_low 3 ALIGNMENT 0 Y12-7e06.p1k chr12 206 186 9423 9412 C 21 0.00 1471 reject_low 25 ALIGNMENT 0 Y12-7e06.p1k chr02 206 186 4089 4078 C 21 0.00 1471 reject_low 31 ALIGNMENT 375 Y12-7e06.p1k chr02 1233 724 3510 4036 C 510 91.96 1471 reject_low 31 ALIGNMENT 0 Y12-7e06.p1k chr02 102 62 4138 4137 C 41 0.00 1471 reject_low 31 ALIGNMENT 819 Y12-7e06.q1k chr14 37 1052 5001 6058 F 1016 94.39 1392 reject_low 16 ALIGNMENT 0 Y12-7e06.p1k chr08 723 263 3568 3563 C 461 0.00 1471 reject_low 30 ALIGNMENT 0 Y12-7e06.p1k chr16 62 102 944241 944240 F 41 0.00 1471 reject_low 34 ALIGNMENT 0 Y12-7e06.p1k chr08 152 133 3643 3638 C 20 0.00 1471 reject_low 30 ALIGNMENT 375 Y12-7e06.p1k chr12 1233 724 8844 9370 C 510 91.96 1471 reject_low 25 ALIGNMENT 52 Y12-7e06.p1k chr02 262 207 4033 4088 C 56 98.21 1471 reject_low 31 ALIGNMENT 0 Y12-7e06.p1k chr08 263 723 558799 558794 F 461 0.00 1471 reject_low 35 ALIGNMENT 50 Y12-7e06.q1k chr12 1052 967 1065677 1065771 C 86 89.53 1392 reject_low 26 ALIGNMENT 24 Y12-7e06.p1k chr16 103 132 944241 944270 F 30 93.33 1471 reject_low 34 ALIGNMENT 677 Y12-7e06.q1k chr05 929 37 570982 571890 C 893 93.28 1392 reject_low 28 ALIGNMENT 52 Y12-7e06.p1k chr08 207 262 558743 558798 F 56 98.21 1471 reject_low 35 ALIGNMENT 858 Y12-7e06.q1k chr09 37 1052 5390 6447 F 1016 95.67 1392 reject_low 11 ALIGNMENT 858 Y12-7e06.q1k chr10 37 1052 5373 6430 F 1016 95.67 1392 reject_low 12 ALIGNMENT 0 Y12-7e06.p1k chr08 186 206 558753 558742 F 21 0.00 1471 reject_low 35 ALIGNMENT 798 Y12-7e06.q1k chr08 1052 37 557518 558579 C 1016 93.80 1392 reject_low 19 ALIGNMENT 49 Y12-7e06.p1k chr13 262 207 3708 3763 C 56 96.43 1471 reject_low 33 ALIGNMENT 0 Y12-7e06.p1k chr06 723 263 2873 2868 C 461 0.00 1471 reject_low 29 ALIGNMENT 802 Y12-7e06.q1k chr12 998 37 1072263 1073262 C 962 95.11 1392 accept_tel 0 ALIGNMENT 819 Y12-7e06.q1k chr16 37 1052 4910 5967 F 1016 94.39 1392 reject_low 17 ALIGNMENT 378 Y12-7e06.p1k chr08 1233 724 3041 3567 C 510 92.16 1471 reject_low 30 ALIGNMENT 378 Y12-7e06.p1k chr06 1233 724 2346 2872 C 510 92.16 1471 reject_low 29 ALIGNMENT 1048 Y12-7e06.p1k chr12 20 1185 1073938 1075116 F 1166 96.83 1471 reject_low 8 ALIGNMENT 24 Y12-7e06.p1k chr06 132 103 2944 2973 C 30 93.33 1471 reject_low 29 ALIGNMENT 1054 Y12-7e06.p1k chr05 20 1185 572566 573744 F 1166 97.00 1471 reject_low 5 ALIGNMENT 0 Y12-7e06.p1k chr13 102 62 3813 3812 C 41 0.00 1471 reject_low 33 ALIGNMENT 0 Y12-7e06.q1k chr12 966 930 1065772 1065784 C 37 0.00 1392 reject_low 26 ALIGNMENT 1048 Y12-7e06.p1k chr15 20 1185 1086902 1088080 F 1166 96.83 1471 reject_low 9 ALIGNMENT 1057 Y12-7e06.p1k chr12 20 1185 1067275 1068453 F 1166 97.08 1471 accept_tel 0 ALIGNMENT 52 Y12-7e06.p1k chr12 262 207 9367 9422 C 56 98.21 1471 reject_low 25 ALIGNMENT 799 Y12-7e06.q1k chr12 37 998 4051 5050 F 962 95.01 1392 reject_low 25 ALIGNMENT 0 Y12-7e06.q1k chr05 966 930 570969 570981 C 37 0.00 1392 reject_low 28 ALIGNMENT 802 Y12-7e06.q1k chr15 998 37 1085227 1086226 C 962 95.11 1392 reject_low 21 ALIGNMENT 29 Y12-7e06.p1k chr08 153 185 558720 558752 F 33 96.97 1471 reject_low 35 ALIGNMENT 0 Y12-7e06.p1k chr12 102 62 3937 3936 C 41 0.00 1471 reject_low 32 ALIGNMENT 0 Y12-7e06.q1k chr05 930 966 5882 5894 F 37 0.00 1392 reject_low 27 ALIGNMENT 29 Y12-7e06.p1k chr13 185 153 3754 3786 C 33 96.97 1471 reject_low 33 ALIGNMENT 52 Y12-7e06.p1k chr08 262 207 3564 3619 C 56 98.21 1471 reject_low 30 ALIGNMENT 0 Y12-7e06.p1k chr12 206 186 3888 3877 C 21 0.00 1471 reject_low 32 ALIGNMENT 1002 Y12-7e06.p1k chr05 1233 20 3156 4408 C 1214 94.65 1471 reject_low 10 ALIGNMENT 0 Y12-7e06.p1k chr08 102 62 3669 3668 C 41 0.00 1471 reject_low 30 ALIGNMENT 24 Y12-7e06.p1k chr02 132 103 4108 4137 C 30 93.33 1471 reject_low 31 ALIGNMENT 52 Y12-7e06.p1k chr06 262 207 2869 2924 C 56 98.21 1471 reject_low 29 ALIGNMENT 50 Y12-7e06.q1k chr05 967 1052 5895 5989 F 86 89.53 1392 reject_low 27 ALIGNMENT 0 Y12-7e06.p1k chr16 186 206 944300 944289 F 21 0.00 1471 reject_low 34 ALIGNMENT 0 Y12-7e06.p1k chr02 152 133 4112 4107 C 20 0.00 1471 reject_low 31 ALIGNMENT 0 Y12-7e06.p1k chr13 723 263 3712 3707 C 461 0.00 1471 reject_low 33 ALIGNMENT 0 Y12-7e06.p1k chr12 152 133 3911 3906 C 20 0.00 1471 reject_low 32 ALIGNMENT 0 Y12-7e06.p1k chr08 133 152 558724 558719 F 20 0.00 1471 reject_low 35 ALIGNMENT 0 Y12-7e06.p1k chr06 152 133 2948 2943 C 20 0.00 1471 reject_low 29 ALIGNMENT 803 Y12-7e06.q1k chr02 37 1052 4252 5314 F 1016 93.90 1392 reject_low 18 ALIGNMENT 799 Y12-7e06.q1k chr08 37 998 3783 4782 F 962 95.01 1392 reject_low 22 ALIGNMENT 29 Y12-7e06.p1k chr02 185 153 4079 4111 C 33 96.97 1471 reject_low 31 ALIGNMENT 0 Y12-7e06.p1k chr13 152 133 3787 3782 C 20 0.00 1471 reject_low 33 ALIGNMENT 799 Y12-7e06.q1k chr13 37 998 3927 4926 F 962 95.01 1392 reject_low 24 ALIGNMENT 24 Y12-7e06.p1k chr12 132 103 9442 9471 C 30 93.33 1471 reject_low 25 ALIGNMENT 787 Y12-7e06.q1k chr05 37 929 5005 5881 F 893 97.31 1392 reject_low 27 ALIGNMENT 0 Y12-7e06.p1k chr16 263 723 944346 944341 F 461 0.00 1471 reject_low 34 ALIGNMENT 24 Y12-7e06.p1k chr12 132 103 3907 3936 C 30 93.33 1471 reject_low 32 ALIGNMENT 1054 Y12-7e06.p1k chr07 20 1185 1086643 1087821 F 1166 97.00 1471 reject_low 6 ALIGNMENT 1054 Y12-7e06.p1k chr16 1233 20 3001 4234 C 1214 96.05 1471 reject_low 4 ALIGNMENT 29 Y12-7e06.p1k chr08 185 153 3610 3642 C 33 96.97 1471 reject_low 30 ALIGNMENT 1081 Y12-7e06.p1k chr09 1233 20 3480 4713 C 1214 96.79 1471 reject_low 1 ALIGNMENT 0 Y12-7e06.p1k chr16 133 152 944271 944266 F 20 0.00 1471 reject_low 34 ALIGNMENT 1048 Y12-7e06.p1k chr04 20 1185 1527737 1528915 F 1166 96.83 1471 reject_low 7 ALIGNMENT 0 Y12-7e06.p1k chr12 723 263 3836 3831 C 461 0.00 1471 reject_low 32 ALIGNMENT 799 Y12-7e06.q1k chr12 37 998 9586 10585 F 962 95.01 1392 reject_low 23 ALIGNMENT 0 Y12-7e06.p1k chr12 152 133 9446 9441 C 20 0.00 1471 reject_low 25 ALIGNMENT 0 Y12-7e06.p1k chr08 62 102 558694 558693 F 41 0.00 1471 reject_low 35 ALIGNMENT 819 Y12-7e06.q1k chr07 1052 37 1084910 1085967 C 1016 94.39 1392 reject_low 15 ALIGNMENT 0 Y12-7e06.p1k chr06 102 62 2974 2973 C 41 0.00 1471 reject_low 29 ALIGNMENT 24 Y12-7e06.p1k chr08 132 103 3639 3668 C 30 93.33 1471 reject_low 30 ALIGNMENT 833 Y12-7e06.q1k chr06 37 1052 3088 4146 F 1016 94.88 1392 reject_low 13 ALIGNMENT 0 Y12-7e06.p1k chr12 723 263 9371 9366 C 461 0.00 1471 reject_low 25 ALIGNMENT 378 Y12-7e06.p1k chr16 724 1185 944342 944813 F 462 94.16 1471 reject_low 34 ALIGNMENT 375 Y12-7e06.p1k chr08 724 1185 558795 559266 F 462 93.94 1471 reject_low 35 ALIGNMENT 0 Y12-7e06.p1k chr13 206 186 3764 3753 C 21 0.00 1471 reject_low 33 ALIGNMENT 375 Y12-7e06.p1k chr13 1233 724 3185 3711 C 510 91.96 1471 reject_low 33 ALIGNMENT 0 Y12-7e06.p1k chr12 102 62 9472 9471 C 41 0.00 1471 reject_low 25 ALIGNMENT 29 Y12-7e06.p1k chr06 185 153 2915 2947 C 33 96.97 1471 reject_low 29 ALIGNMENT 827 Y12-7e06.q1k chr16 1052 37 943068 944126 C 1016 94.69 1392 reject_low 14 ALIGNMENT 24 Y12-7e06.p1k chr08 103 132 558694 558723 F 30 93.33 1471 reject_low 35 ALIGNMENT 29 Y12-7e06.p1k chr16 153 185 944267 944299 F 33 96.97 1471 reject_low 34 ALIGNMENT 24 Y12-7e06.p1k chr13 132 103 3783 3812 C 30 93.33 1471 reject_low 33 ALIGNMENT 50 Y12-7e06.q1k chr05 1052 967 570874 570968 C 86 89.53 1392 reject_low 28 ALIGNMENT 29 Y12-7e06.p1k chr12 185 153 3878 3910 C 33 96.97 1471 reject_low 32 ALIGNMENT 52 Y12-7e06.p1k chr16 207 262 944290 944345 F 56 98.21 1471 reject_low 34 ALIGNMENT 52 Y12-7e06.p1k chr12 262 207 3832 3887 C 56 98.21 1471 reject_low 32 ALIGNMENT 375 Y12-7e06.p1k chr12 1233 724 3309 3835 C 510 91.96 1471 reject_low 32 ALIGNMENT 1081 Y12-7e06.p1k chr10 1233 20 3463 4696 C 1214 96.79 1471 reject_low 2 ALIGNMENT 0 Y12-7e06.p1k chr08 206 186 3620 3609 C 21 0.00 1471 reject_low 30 ALIGNMENT 453 Y12-7e07.q1k chr04 850 107 48590 49328 C 744 88.31 1453 accept 0 ALIGNMENT 933 Y12-7e08.p1k chr08 1094 24 154335 155413 C 1071 98.23 1419 accept 0 ALIGNMENT 890 Y12-7e08.q1k chr08 36 1079 149783 150847 F 1044 96.84 1279 accept 0 ALIGNMENT 1008 Y12-7e09.p1k chr02 31 1162 457502 458647 F 1132 97.44 1489 accept 0 ALIGNMENT 953 Y12-7e09.q1k chr02 1174 34 462208 463363 C 1141 95.97 1361 accept 0 ALIGNMENT 950 Y12-7e10.q1k chr04 1143 27 595967 597095 C 1117 96.42 1350 accept 0 ALIGNMENT 950 Y12-7e10.p1k chr04 22 1099 591275 592358 F 1078 97.03 1475 accept 0 ALIGNMENT 978 Y12-7e11.q1k chr04 38 1258 621753 622996 F 1221 95.17 1362 accept 0 ALIGNMENT 1036 Y12-7e11.p1k chr04 1207 22 625856 627057 C 1186 97.22 1483 accept 0 ALIGNMENT 460 Y12-7e12.p1k chr12 582 1180 489754 490364 F 599 93.49 1454 reject_low 2 ALIGNMENT 0 Y12-7e12.p1k chr12 62 581 489754 489753 F 520 0.00 1454 reject_low 2 ALIGNMENT 979 Y12-7e12.q1k chr12 1197 41 455049 456223 C 1157 95.76 1344 reject_low 1 ALIGNMENT 0 Y12-7e12.p1k chr12 62 233 451419 451418 F 172 0.00 1454 reject_low 1 ALIGNMENT 904 Y12-7e12.p1k chr12 18 1180 460333 461533 F 1163 93.72 1454 accept 0 ALIGNMENT 979 Y12-7e12.q1k chr12 1197 41 464186 465360 C 1157 95.76 1344 accept 0 ALIGNMENT 749 Y12-7e12.p1k chr12 234 1180 451419 452396 F 947 94.19 1454 reject_low 1 ALIGNMENT 998 Y12-7e14.q1k chr02 1194 37 168922 170099 C 1158 96.63 1330 accept 0 ALIGNMENT 237 Y12-7e14.q1k chr02 757 1158 414180 414595 F 402 88.06 1330 reject_low 1 ALIGNMENT 945 Y12-7e14.p1k chr02 19 1188 165814 166993 F 1170 95.56 1492 accept 0 ALIGNMENT 0 Y12-7e14.q1k chr02 62 756 414180 414179 F 695 0.00 1330 reject_low 1 ALIGNMENT 912 Y12-7e16.q1k chr15 1090 36 590112 591183 C 1055 96.49 1304 accept 0 ALIGNMENT 1043 Y12-7e16.p1k chr15 35 1182 586429 587587 F 1148 97.47 1484 accept 0 ALIGNMENT 0 Y12-7e17.p1k chr03 887 273 82453 82452 C 615 0.00 1471 reject_low 6 ALIGNMENT 0 Y12-7e17.p1k chr02 62 190 645161 645160 F 129 0.00 1471 reject_low 4 ALIGNMENT 0 Y12-7e17.p1k chr12 62 191 797178 797177 F 130 0.00 1471 reject_low 12 ALIGNMENT 0 Y12-7e17.p1k chr09 62 190 370413 370412 F 129 0.00 1471 reject_low 7 ALIGNMENT 74 Y12-7e17.p1k chr11 264 191 141022 141095 C 74 100.00 1471 reject_low 9 ALIGNMENT 0 Y12-7e17.p1k chr07 887 275 401520 401519 C 613 0.00 1471 reject_low 3 ALIGNMENT 0 Y12-7e17.p1k chr05 275 887 355012 355011 F 613 0.00 1471 reject_low 2 ALIGNMENT 0 Y12-7e17.p1k chr13 265 887 290872 290871 F 623 0.00 1471 reject_low 13 ALIGNMENT 0 Y12-7e17.p1k chr07 62 191 328586 328585 F 130 0.00 1471 reject_low 10 ALIGNMENT 73 Y12-7e17.p1k chr07 192 264 328586 328658 F 73 100.00 1471 reject_low 10 ALIGNMENT 0 Y12-7e17.p1k chr13 62 190 290799 290798 F 129 0.00 1471 reject_low 13 ALIGNMENT 77 Y12-7e17.p1k chr02 191 273 645161 645243 F 83 97.59 1471 reject_low 4 ALIGNMENT 71 Y12-7e17.p1k chr13 191 264 290799 290872 F 74 98.65 1471 reject_low 13 ALIGNMENT 76 Y12-7e17.p1k chr03 272 191 82452 82533 C 82 97.56 1471 reject_low 6 ALIGNMENT 0 Y12-7e17.p1k chr07 265 887 328658 328657 F 623 0.00 1471 reject_low 10 ALIGNMENT 76 Y12-7e17.p1k chr05 265 187 487324 487402 C 79 98.73 1471 reject_low 1 ALIGNMENT 977 Y12-7e17.p1k chr05 23 1207 176926 178111 F 1185 95.61 1471 accept 0 ALIGNMENT 84 Y12-7e17.p1k chr05 191 274 354929 355012 F 84 100.00 1471 reject_low 2 ALIGNMENT 75 Y12-7e17.p1k chr09 191 265 370413 370487 F 75 100.00 1471 reject_low 7 ALIGNMENT 0 Y12-7e17.p1k chr05 186 62 487403 487402 C 125 0.00 1471 reject_low 1 ALIGNMENT 0 Y12-7e17.p1k chr11 887 265 141023 141022 C 623 0.00 1471 reject_low 9 ALIGNMENT 0 Y12-7e17.p1k chr02 274 887 645243 645242 F 614 0.00 1471 reject_low 4 ALIGNMENT 0 Y12-7e17.p1k chr10 887 272 115927 115926 C 616 0.00 1471 reject_low 5 ALIGNMENT 72 Y12-7e17.p1k chr12 192 263 797178 797249 F 72 100.00 1471 reject_low 12 ALIGNMENT 0 Y12-7e17.p1k chr03 190 62 82534 82533 C 129 0.00 1471 reject_low 6 ALIGNMENT 0 Y12-7e17.p1k chr16 887 265 210191 210190 C 623 0.00 1471 reject_low 11 ALIGNMENT 0 Y12-7e17.p1k chr05 62 190 354929 354928 F 129 0.00 1471 reject_low 2 ALIGNMENT 0 Y12-7e17.p1k chr16 191 62 210263 210262 C 130 0.00 1471 reject_low 11 ALIGNMENT 0 Y12-7e17.p1k chr07 191 62 401602 401601 C 130 0.00 1471 reject_low 3 ALIGNMENT 0 Y12-7e17.p1k chr05 887 266 487325 487324 C 622 0.00 1471 reject_low 1 ALIGNMENT 0 Y12-7e17.p1k chr12 264 887 797249 797248 F 624 0.00 1471 reject_low 12 ALIGNMENT 0 Y12-7e17.p1k chr07 265 887 541926 541925 F 623 0.00 1471 reject_low 8 ALIGNMENT 0 Y12-7e17.p1k chr09 266 887 370487 370486 F 622 0.00 1471 reject_low 7 ALIGNMENT 0 Y12-7e17.p1k chr11 190 62 141096 141095 C 129 0.00 1471 reject_low 9 ALIGNMENT 61 Y12-7e17.p1k chr09 191 272 197588 197669 F 82 91.46 1471 reject_low 14 ALIGNMENT 73 Y12-7e17.p1k chr16 264 192 210190 210262 C 73 100.00 1471 reject_low 11 ALIGNMENT 0 Y12-7e17.p1k chr07 62 190 541853 541852 F 129 0.00 1471 reject_low 8 ALIGNMENT 0 Y12-7e17.p1k chr10 190 62 116007 116006 C 129 0.00 1471 reject_low 5 ALIGNMENT 74 Y12-7e17.p1k chr07 191 264 541853 541926 F 74 100.00 1471 reject_low 8 ALIGNMENT 0 Y12-7e17.p1k chr09 62 190 197588 197587 F 129 0.00 1471 reject_low 14 ALIGNMENT 990 Y12-7e17.q1k chr05 1240 35 181351 182570 C 1206 95.36 1309 accept 0 ALIGNMENT 80 Y12-7e17.p1k chr07 274 192 401519 401601 C 83 98.80 1471 reject_low 3 ALIGNMENT 0 Y12-7e17.p1k chr09 273 887 197669 197668 F 615 0.00 1471 reject_low 14 ALIGNMENT 78 Y12-7e17.p1k chr10 271 191 115926 116006 C 81 98.77 1471 reject_low 5 ALIGNMENT 622 Y12-7e21.p1k chr02 1177 426 766877 767637 C 752 95.61 1383|0,6 accept 0 ALIGNMENT 1013 Y12-7e21.q1k chr02 34 1183 762741 763901 F 1150 96.96 1249 accept 0 ALIGNMENT 364 Y12-7e21.p1k chr02 436 22 767670 768088 C 415 97.11 1383|5,0 accept 0 ALIGNMENT 0 Y12-7e21.p1k chr02 431 432 767632 767674 C 0 0.00 1383 accept 0 ALIGNMENT 1027 Y12-7e22.q1k chr11 1255 35 574449 575679 C 1221 95.82 1267 accept 0 ALIGNMENT 1084 Y12-7e22.p1k chr11 18 1263 573355 574612 F 1246 96.63 1416 accept 0 ALIGNMENT 859 Y12-7e24.q1k chr07 37 1150 846623 847726 F 1114 94.08 1253 accept 0 ALIGNMENT 969 Y12-7e24.p1k chr07 1243 55 852073 853254 C 1189 95.21 1380 accept 0 ALIGNMENT 621 Y12-7f02.p1k chr03 121 991 113452 114319 F 871 91.96 1457 accept 0 ALIGNMENT 680 Y12-7f02.q1k chr03 1043 43 117754 118746 C 1001 91.51 1416 accept 0 ALIGNMENT 556 Y12-7f04.p1k chr11 84 895 548912 549715 F 812 91.38 1554 accept 0 ALIGNMENT 257 Y12-7f04.q1k chr11 534 36 552880 553372 C 499 84.97 1492 accept 0 ALIGNMENT 964 Y12-7f05.q1k chr05 1137 34 305933 307048 C 1104 96.56 1463 accept 0 ALIGNMENT 0 Y12-7f05.q1k chr09 306 855 231964 231963 F 550 0.00 1463 reject_low 1 ALIGNMENT 952 Y12-7f05.p1k chr05 22 1104 302899 303996 F 1083 97.05 1388 accept 0 ALIGNMENT 239 Y12-7f05.q1k chr09 34 305 231694 231964 F 272 96.32 1463 reject_low 1 ALIGNMENT 933 Y12-7f07.q1k chr02 33 1107 400412 401500 F 1075 96.65 1286 accept 0 ALIGNMENT 949 Y12-7f07.p1k chr02 1206 19 404589 405799 C 1188 94.95 1460 accept 0 ALIGNMENT 53 Y12-7f08.p1k chr10 692 617 61834 61909 C 76 90.79 1450 reject_low 2 ALIGNMENT 55 Y12-7f08.p1k chr10 433 30 62096 62500 C 404 72.77 1450 reject_low 2 ALIGNMENT 0 Y12-7f08.p1k chr10 616 434 61910 62095 C 183 0.00 1450 reject_low 2 ALIGNMENT 976 Y12-7f08.p1k chr03 20 1177 195376 196554 F 1158 96.03 1450 accept 0 ALIGNMENT 82 Y12-7f08.q1k chr03 122 38 293028 293112 C 85 100.00 1330 reject_low 3 ALIGNMENT 0 Y12-7f08.q1k chr03 875 853 11510 11509 C 23 0.00 1330 reject_low 1 ALIGNMENT 1007 Y12-7f08.q1k chr03 1161 38 198349 199480 C 1124 97.42 1330 accept 0 ALIGNMENT 0 Y12-7f08.q1k chr03 875 123 293029 293028 C 753 0.00 1330 reject_low 3 ALIGNMENT 0 Y12-7f08.p1k chr10 893 693 61835 61834 C 201 0.00 1450 reject_low 2 ALIGNMENT 782 Y12-7f08.q1k chr03 852 38 11509 12323 C 815 99.14 1330 reject_low 1 ALIGNMENT 620 Y12-7f09.p1k chr13 1185 18 200718 201899 C 1168 86.56 1486 reject_low 14 ALIGNMENT 980 Y12-7f09.p1k chr13 18 1185 357355 358536 F 1168 96.75 1486 reject_low 2 ALIGNMENT 947 Y12-7f09.p1k chr14 18 1185 96961 98142 F 1168 95.80 1486 reject_low 25 ALIGNMENT 698 Y12-7f09.p1k chr08 18 1185 543961 545142 F 1168 88.78 1486 reject_low 27 ALIGNMENT 972 Y12-7f09.q1k chr12 36 1146 653024 654142 F 1111 96.85 1375 reject_low 23 ALIGNMENT 988 Y12-7f09.q1k chr05 1146 36 445999 447115 C 1111 97.30 1375 reject_low 13 ALIGNMENT 988 Y12-7f09.q1k chr16 1146 36 807244 808360 C 1111 97.30 1375 reject_low 17 ALIGNMENT 561 Y12-7f09.p1k chr04 1065 18 985720 986772 C 1048 86.64 1486 reject_low 28 ALIGNMENT 1013 Y12-7f09.q1k chr04 1181 36 880860 882017 C 1146 97.21 1375 reject_low 18 ALIGNMENT 979 Y12-7f09.q1k chr16 36 1146 58653 59769 F 1111 97.03 1375 reject_low 22 ALIGNMENT 701 Y12-7f09.p1k chr16 18 1185 850982 852163 F 1168 88.87 1486 reject_low 11 ALIGNMENT 988 Y12-7f09.q1k chr10 36 1146 480163 481279 F 1111 97.30 1375 reject_low 3 ALIGNMENT 593 Y12-7f09.p1k chr10 1185 18 476764 477945 C 1168 85.79 1486 reject_low 16 ALIGNMENT 620 Y12-7f09.p1k chr05 18 1185 443749 444930 F 1168 86.56 1486 reject_low 13 ALIGNMENT 653 Y12-7f09.p1k chr04 1056 18 1100286 1101330 C 1039 89.70 1486 reject_low 10 ALIGNMENT 626 Y12-7f09.p1k chr15 1185 18 122089 123270 C 1168 86.73 1486 reject_low 12 ALIGNMENT 878 Y12-7f09.p1k chr15 1185 18 599202 600383 C 1168 93.92 1486 reject_low 6 ALIGNMENT 953 Y12-7f09.p1k chr10 1185 18 482348 483529 C 1168 96.06 1486 reject_low 3 ALIGNMENT 978 Y12-7f09.q1k chr16 36 1146 846610 847729 F 1111 97.03 1375 reject_low 9 ALIGNMENT 878 Y12-7f09.p1k chr07 18 1185 817749 818930 F 1168 93.84 1486 reject_low 5 ALIGNMENT 623 Y12-7f09.p1k chr01 18 1185 160595 161776 F 1168 86.64 1486 reject_low 15 ALIGNMENT 986 Y12-7f09.p1k chr02 1185 18 225423 226604 C 1168 97.00 1486 ambiguous_trans 0 ALIGNMENT 1013 Y12-7f09.q1k chr02 36 1181 261772 262929 F 1146 97.21 1375 ambiguous_trans 1 ALIGNMENT 962 Y12-7f09.p1k chr07 1185 18 540151 541332 C 1168 96.32 1486 reject_low 24 ALIGNMENT 988 Y12-7f09.q1k chr15 36 1146 119904 121020 F 1111 97.30 1375 reject_low 12 ALIGNMENT 985 Y12-7f09.q1k chr07 1146 36 564450 565566 C 1111 97.21 1375 reject_low 21 ALIGNMENT 982 Y12-7f09.q1k chr15 36 1146 597017 598133 F 1111 97.12 1375 reject_low 6 ALIGNMENT 1019 Y12-7f09.q1k chr02 36 1181 223238 224395 F 1146 97.38 1375 ambiguous_trans 0 ALIGNMENT 985 Y12-7f09.q1k chr04 1146 36 989322 990438 C 1111 97.21 1375 reject_low 20 ALIGNMENT 992 Y12-7f09.q1k chr12 1157 36 217674 218804 C 1122 97.15 1375 reject_low 4 ALIGNMENT 854 Y12-7f09.p1k chr13 18 1185 373053 374234 F 1168 93.24 1486 reject_low 7 ALIGNMENT 988 Y12-7f09.q1k chr13 36 1146 198533 199649 F 1111 97.30 1375 reject_low 14 ALIGNMENT 985 Y12-7f09.q1k chr01 1146 36 162845 163961 C 1111 97.21 1375 reject_low 15 ALIGNMENT 854 Y12-7f09.p1k chr05 18 1185 492848 494029 F 1168 93.24 1486 reject_low 26 ALIGNMENT 698 Y12-7f09.p1k chr13 1185 18 188551 189732 C 1168 88.78 1486 reject_low 8 ALIGNMENT 985 Y12-7f09.q1k chr04 1146 36 648100 649216 C 1111 97.21 1375 reject_low 19 ALIGNMENT 875 Y12-7f09.p1k chr02 1185 18 263960 265141 C 1168 93.84 1486 ambiguous_trans 1 ALIGNMENT 988 Y12-7f09.q1k chr13 1146 36 375303 376419 C 1111 97.30 1375 reject_low 7 ALIGNMENT 854 Y12-7f09.p1k chr12 18 1185 215438 216619 F 1168 93.24 1486 reject_low 4 ALIGNMENT 988 Y12-7f09.q1k chr13 36 1146 186366 187482 F 1111 97.30 1375 reject_low 8 ALIGNMENT 548 Y12-7f09.p1k chr16 18 1185 804994 806175 F 1168 84.50 1486 reject_low 17 ALIGNMENT 986 Y12-7f09.q1k chr13 1157 36 359591 360721 C 1122 96.97 1375 reject_low 2 ALIGNMENT 698 Y12-7f09.p1k chr16 1185 18 848798 849979 C 1168 88.78 1486 reject_low 9 ALIGNMENT 943 Y12-7f09.q1k chr16 1146 36 853232 854348 C 1111 95.95 1375 reject_low 11 ALIGNMENT 982 Y12-7f09.q1k chr07 1146 36 819999 821115 C 1111 97.12 1375 reject_low 5 ALIGNMENT 985 Y12-7f09.q1k chr04 36 1146 1097964 1099080 F 1111 97.21 1375 reject_low 10 ALIGNMENT 985 Y12-7f09.q1k chr10 36 1146 474579 475695 F 1111 97.21 1375 reject_low 16 ALIGNMENT 0 Y12-7f10.p1k chr12 409 62 36318 36317 C 348 0.00 1494 reject_low 2 ALIGNMENT 114 Y12-7f10.p1k chr12 855 410 35883 36317 C 446 76.46 1494 reject_low 2 ALIGNMENT 1032 Y12-7f10.p1k chr16 22 1193 921513 922692 F 1172 96.76 1494 ambiguous_tel 1 ALIGNMENT 889 Y12-7f10.q1k chr05 34 1056 286536 287572 F 1023 96.77 1350 accept 0 ALIGNMENT 989 Y12-7f11.q1k chr07 39 1185 539735 540893 F 1147 96.95 1340 ambiguous_trans 3 ALIGNMENT 1001 Y12-7f11.q1k chr13 1185 39 357794 358952 C 1147 97.30 1340 ambiguous_trans 2 ALIGNMENT 979 Y12-7f11.p1k chr13 23 1165 834656 835813 F 1143 96.33 1414 accept 0 ALIGNMENT 777 Y12-7f11.q1k chr04 39 1112 1099733 1100807 F 1074 92.09 1340 ambiguous_trans 15 ALIGNMENT 741 Y12-7f11.q1k chr16 1112 39 805517 806591 C 1074 90.97 1340 ambiguous_trans 25 ALIGNMENT 777 Y12-7f11.q1k chr15 39 1112 121673 122747 F 1074 92.09 1340 ambiguous_trans 20 ALIGNMENT 777 Y12-7f11.q1k chr13 39 1112 188135 189209 F 1074 92.09 1340 ambiguous_trans 18 ALIGNMENT 896 Y12-7f11.q1k chr15 39 1185 598786 599944 F 1147 94.25 1340 ambiguous_trans 6 ALIGNMENT 872 Y12-7f11.q1k chr07 1185 39 818188 819346 C 1147 93.55 1340 ambiguous_trans 10 ALIGNMENT 777 Y12-7f11.q1k chr16 39 1112 60422 61496 F 1074 92.09 1340 ambiguous_trans 21 ALIGNMENT 875 Y12-7f11.q1k chr13 1185 39 373492 374650 C 1147 93.72 1340 ambiguous_trans 9 ALIGNMENT 872 Y12-7f11.q1k chr12 39 1140 654795 655900 F 1102 94.37 1340 ambiguous_trans 14 ALIGNMENT 777 Y12-7f11.q1k chr16 39 1112 848382 849456 F 1074 92.09 1340 ambiguous_trans 22 ALIGNMENT 878 Y12-7f11.q1k chr05 1185 39 493287 494445 C 1147 93.81 1340 ambiguous_trans 8 ALIGNMENT 980 Y12-7f11.q1k chr10 39 1185 481932 483090 F 1147 96.69 1340 ambiguous_trans 4 ALIGNMENT 869 Y12-7f11.q1k chr12 1185 39 215877 217035 C 1147 93.55 1340 ambiguous_trans_ua 11 ALIGNMENT 893 Y12-7f11.q1k chr02 39 1185 263544 264702 F 1147 94.16 1340 ambiguous_trans 7 ALIGNMENT 777 Y12-7f11.q1k chr05 1112 39 444272 445346 C 1074 92.09 1340 ambiguous_trans 16 ALIGNMENT 777 Y12-7f11.q1k chr13 39 1112 200302 201376 F 1074 92.09 1340 ambiguous_trans 19 ALIGNMENT 750 Y12-7f11.q1k chr16 1112 39 851505 852579 C 1074 91.25 1340 ambiguous_trans 24 ALIGNMENT 872 Y12-7f11.q1k chr04 39 1140 1210661 1211766 F 1102 94.37 1340 ambiguous_trans 13 ALIGNMENT 753 Y12-7f11.q1k chr10 39 1112 476348 477422 F 1074 91.34 1340 ambiguous_trans 23 ALIGNMENT 777 Y12-7f11.q1k chr12 1112 39 476854 477928 C 1074 92.09 1340 ambiguous_trans 17 ALIGNMENT 962 Y12-7f11.q1k chr14 1185 39 97400 98558 C 1147 96.16 1340 ambiguous_trans 5 ALIGNMENT 1001 Y12-7f11.q1k chr02 39 1185 225007 226165 F 1147 97.30 1340 ambiguous_trans 1 ALIGNMENT 872 Y12-7f11.q1k chr04 1140 39 987564 988669 C 1102 94.37 1340 ambiguous_trans 12 ALIGNMENT 900 Y12-7f12.p1k chr02 18 1065 120721 121786 F 1048 97.23 1349 accept 0 ALIGNMENT 1034 Y12-7f12.q1k chr02 1222 36 125472 126663 C 1187 96.63 1364 accept 0 ALIGNMENT 1015 Y12-7f13.p1k chr04 1152 17 258485 259634 C 1136 97.62 1426 accept 0 ALIGNMENT 980 Y12-7f13.q1k chr04 36 1165 254265 255403 F 1130 96.81 1337 accept 0 ALIGNMENT 980 Y12-7f14.p1k chr09 1172 24 164130 165292 C 1149 96.61 1455 accept 0 ALIGNMENT 909 Y12-7f14.q1k chr09 42 1107 160114 161192 F 1066 96.34 1310 accept 0 ALIGNMENT 959 Y12-7f17.q1k chr08 37 1184 353792 354951 F 1148 95.64 1297 accept 0 ALIGNMENT 1038 Y12-7f17.p1k chr08 1177 23 356811 357976 C 1155 97.58 1416 accept 0 ALIGNMENT 925 Y12-7f18.p1k chr05 1137 24 143718 144822 C 1114 96.32 1427 accept 0 ALIGNMENT 975 Y12-7f18.q1k chr05 37 1204 140657 141827 F 1168 95.46 1309 accept 0 ALIGNMENT 989 Y12-7f19.p1k chr06 28 1125 192183 193288 F 1098 97.63 1417 accept 0 ALIGNMENT 998 Y12-7f19.q1k chr06 1188 36 194956 196121 C 1153 96.27 1296 accept 0 ALIGNMENT 24 Y12-7f20.p1k chr11 701 653 528949 528997 C 49 83.67 1424 reject_low 1 ALIGNMENT 55 Y12-7f20.p1k chr11 291 119 529359 529531 C 173 77.46 1424 reject_low 1 ALIGNMENT 0 Y12-7f20.p1k chr11 878 702 528950 528949 C 177 0.00 1424 reject_low 1 ALIGNMENT 0 Y12-7f20.p1k chr11 118 62 529532 529531 C 57 0.00 1424 reject_low 1 ALIGNMENT 0 Y12-7f20.p1k chr11 652 292 528998 529358 C 361 0.00 1424 reject_low 1 ALIGNMENT 1000 Y12-7f20.q1k chr10 1302 36 177544 178820 C 1267 94.08 1326 accept 0 ALIGNMENT 1053 Y12-7f20.p1k chr10 22 1251 174113 175355 F 1230 96.26 1424 accept 0 ALIGNMENT 1037 Y12-7f22.q1k chr08 40 1249 362974 364187 F 1210 95.87 1270 accept 0 ALIGNMENT 1067 Y12-7f22.p1k chr08 1222 17 366524 367737 C 1206 96.77 1394 accept 0 ALIGNMENT 1095 Y12-7f23.p1k chr15 1228 23 390976 392187 C 1206 97.68 1365 accept 0 ALIGNMENT 981 Y12-7f23.q1k chr15 32 1237 387993 389196 F 1206 95.27 1243 accept 0 ALIGNMENT 778 Y12-7f24.q1k chr12 1001 32 466380 467341 C 970 94.74 1333 accept 1 ALIGNMENT 778 Y12-7f24.q1k chr12 1001 32 457243 458204 C 970 94.74 1333 accept 0 ALIGNMENT 376 Y12-7g03.p1k chr12 111 884 850683 851454 F 774 84.24 1479 accept 0 ALIGNMENT 887 Y12-7g04.p1k chr04 14 1152 1299419 1300571 F 1139 94.21 1480 accept 0 ALIGNMENT 788 Y12-7g04.q1k chr04 986 35 1303781 1304719 C 952 96.01 1455 accept 0 ALIGNMENT 963 Y12-7g05.q1k chr12 36 1092 126216 127282 F 1057 97.92 1289 accept 0 ALIGNMENT 978 Y12-7g05.p1k chr12 1275 21 129836 131086 C 1255 94.18 1558 accept 0 ALIGNMENT 108 Y12-7g06.q1k chr09 166 727 119559 120120 F 562 74.20 1316 reject_low 1 ALIGNMENT 1026 Y12-7g06.p1k chr15 20 1200 854921 856122 F 1181 96.70 1445 accept 0 ALIGNMENT 957 Y12-7g06.q1k chr15 1141 36 856808 857928 C 1106 97.11 1316 accept 0 ALIGNMENT 0 Y12-7g06.q1k chr09 62 165 119559 119558 F 104 0.00 1316 reject_low 1 ALIGNMENT 0 Y12-7g06.q1k chr09 728 821 120120 120119 F 94 0.00 1316 reject_low 1 ALIGNMENT 1038 Y12-7g07.p1k chr04 19 1225 43130 44348 F 1207 95.86 1509 accept 0 ALIGNMENT 0 Y12-7g07.p1k chr14 62 949 252059 252058 F 888 0.00 1509 reject_low 1 ALIGNMENT 1037 Y12-7g07.q1k chr04 1214 35 48195 49381 C 1180 96.78 1385 accept 0 ALIGNMENT 114 Y12-7g07.p1k chr14 950 1225 252059 252342 F 276 80.43 1509 reject_low 1 ALIGNMENT 1024 Y12-7g08.p1k chr06 19 1128 159140 160256 F 1110 97.84 1441 accept 0 ALIGNMENT 1004 Y12-7g08.q1k chr06 1193 37 163820 164983 C 1157 96.37 1372 accept 0 ALIGNMENT 994 Y12-7g09.p1k chr04 1308 16 1440445 1441748 C 1293 94.59 1540 accept 0 ALIGNMENT 895 Y12-7g09.q1k chr04 36 1184 1438933 1440093 F 1149 94.95 1371 accept 0 ALIGNMENT 972 Y12-7g10.q1k chr10 1111 35 335747 336828 C 1077 97.49 1348 accept 0 ALIGNMENT 924 Y12-7g10.p1k chr10 32 1083 331143 332198 F 1052 97.15 1431 accept 0 ALIGNMENT 819 Y12-7g11.q1k chr15 34 1004 315816 316814 F 971 95.67 1311 accept 0 ALIGNMENT 999 Y12-7g11.p1k chr15 1245 31 320162 321379 C 1215 95.31 1486 accept 0 ALIGNMENT 1052 Y12-7g12.q1k chr11 1216 35 43377 44570 C 1182 97.29 1362 accept 0 ALIGNMENT 1021 Y12-7g12.p1k chr11 19 1153 39169 40311 F 1135 97.00 1440 accept 0 ALIGNMENT 917 Y12-7g13.q1k chr15 35 1072 352870 353924 F 1038 97.50 1310 accept 0 ALIGNMENT 1026 Y12-7g13.p1k chr15 1148 20 356517 357653 C 1129 97.79 1463 accept 0 ALIGNMENT 967 Y12-7g14.p1k chr07 1225 15 858464 859679 C 1211 94.63 1501 accept 0 ALIGNMENT 1014 Y12-7g14.q1k chr07 45 1234 855171 856363 F 1190 95.71 1379 accept 0 ALIGNMENT 894 Y12-7g15.p1k chr13 1277 38 372706 373961 C 1240 93.06 1522 ambiguous_trans 5 ALIGNMENT 589 Y12-7g15.p1k chr04 38 1119 985864 986949 F 1082 86.88 1522 ambiguous_trans 21 ALIGNMENT 959 Y12-7g15.p1k chr14 1186 24 96716 97885 C 1163 96.30 1522 ambiguous_trans 6 ALIGNMENT 102 Y12-7g15.p1k chr13 1277 963 378294 378621 C 315 81.27 1522 ambiguous_trans 24 ALIGNMENT 0 Y12-7g15.p1k chr13 961 62 362919 362918 C 900 0.00 1522 ambiguous_trans 22 ALIGNMENT 733 Y12-7g15.p1k chr04 38 1186 1100422 1101581 F 1149 90.08 1522 ambiguous_trans 16 ALIGNMENT 942 Y12-7g15.p1k chr10 24 1186 482605 483780 F 1163 95.87 1522 ambiguous_trans 8 ALIGNMENT 55 Y12-7g15.p1k chr13 963 1255 196332 196636 F 293 76.11 1522 ambiguous_trans 25 ALIGNMENT 948 Y12-7g15.p1k chr07 24 1186 540408 541583 F 1163 96.04 1522 ambiguous_trans 7 ALIGNMENT 989 Y12-7g15.p1k chr02 24 1186 225680 226849 F 1163 97.16 1522 ambiguous_trans 3 ALIGNMENT 0 Y12-7g15.p1k chr13 962 62 378622 378621 C 901 0.00 1522 ambiguous_trans 24 ALIGNMENT 0 Y12-7g15.p1k chr13 62 1076 378663 378662 F 1015 0.00 1522 ambiguous_trans_ua 26 ALIGNMENT 957 Y12-7g15.q1k chr05 1128 36 488237 489343 C 1093 97.35 1354 accept 0 ALIGNMENT 929 Y12-7g15.p1k chr02 24 1277 264217 265482 F 1254 93.70 1522 ambiguous_trans 1 ALIGNMENT 929 Y12-7g15.p1k chr07 1277 24 817408 818673 C 1254 93.70 1522 ambiguous_trans 2 ALIGNMENT 983 Y12-7g15.p1k chr13 1186 24 357110 358279 C 1163 96.99 1522 ambiguous_trans 4 ALIGNMENT 622 Y12-7g15.p1k chr13 38 1186 200991 202149 F 1149 86.77 1522 ambiguous_trans 19 ALIGNMENT 875 Y12-7g15.p1k chr05 1099 38 492691 493756 C 1062 96.23 1522 ambiguous_trans 11 ALIGNMENT 123 Y12-7g15.p1k chr13 963 1255 184170 184469 F 293 83.96 1522 ambiguous_trans 23 ALIGNMENT 20 Y12-7g15.p1k chr13 1077 1103 378663 378689 F 27 92.59 1522 ambiguous_trans_ua 26 ALIGNMENT 755 Y12-7g15.p1k chr13 38 1277 188824 190073 F 1240 89.27 1522 ambiguous_trans 12 ALIGNMENT 676 Y12-7g15.p1k chr15 38 1186 122362 123521 F 1149 88.42 1522 ambiguous_trans 17 ALIGNMENT 622 Y12-7g15.p1k chr05 1186 38 443499 444657 C 1149 86.77 1522 ambiguous_trans 18 ALIGNMENT 926 Y12-7g15.p1k chr15 24 1186 599459 600628 F 1163 95.36 1522 ambiguous_trans 10 ALIGNMENT 613 Y12-7g15.p1k chr01 1186 38 160345 161503 C 1149 86.51 1522 ambiguous_trans 20 ALIGNMENT 892 Y12-7g15.p1k chr12 1268 38 215099 216346 C 1231 93.18 1522 ambiguous_trans_ua 9 ALIGNMENT 742 Y12-7g15.p1k chr16 1255 38 850657 851890 C 1218 89.24 1522 ambiguous_trans 14 ALIGNMENT 129 Y12-7g15.p1k chr13 1255 962 362618 362918 C 294 84.69 1522 ambiguous_trans 22 ALIGNMENT 0 Y12-7g15.p1k chr13 62 962 196332 196331 F 901 0.00 1522 ambiguous_trans 25 ALIGNMENT 735 Y12-7g15.p1k chr16 38 1277 849071 850326 F 1240 88.79 1522 ambiguous_trans 13 ALIGNMENT 753 Y12-7g15.p1k chr08 1186 38 543716 544869 C 1149 90.60 1522 ambiguous_trans 15 ALIGNMENT 0 Y12-7g15.p1k chr13 62 962 184170 184169 F 901 0.00 1522 ambiguous_trans 23 ALIGNMENT 1003 Y12-7g16.p1k chr15 1179 22 985572 986748 C 1158 96.46 1449 accept 0 ALIGNMENT 989 Y12-7g16.q1k chr15 37 1208 981745 982926 F 1172 95.99 1375 accept 0 ALIGNMENT 442 Y12-7g17.q1k chr15 35 1131 24508 25634 F 1097 82.41 1305 reject_low 2 ALIGNMENT 563 Y12-7g17.q1k chr10 35 1081 18740 19802 F 1047 87.01 1305 accept 0 ALIGNMENT 868 Y12-7g17.p1k chr10 1053 20 22609 23653 C 1034 95.74 1367 accept 0 ALIGNMENT 510 Y12-7g17.q1k chr09 35 1033 18757 19768 F 999 86.19 1305 reject_low 1 ALIGNMENT 1005 Y12-7g18.p1k chr07 22 1194 237968 239160 F 1173 96.25 1424 accept 0 ALIGNMENT 978 Y12-7g18.q1k chr07 1205 41 241589 242758 C 1165 95.97 1355 accept 0 ALIGNMENT 1089 Y12-7g19.p1k chr16 1288 18 504055 505334 C 1271 96.22 1447 accept 0 ALIGNMENT 958 Y12-7g19.q1k chr16 32 1192 500074 501255 F 1161 95.00 1314 accept 0 ALIGNMENT 1035 Y12-7g21.p1k chr14 1271 27 422632 423878 C 1245 95.58 1453 accept 0 ALIGNMENT 1024 Y12-7g21.q1k chr14 28 1211 419466 420654 F 1184 96.03 1267 accept 0 ALIGNMENT 1027 Y12-7g22.q1k chr14 1275 37 421901 423147 C 1239 95.40 1277 accept 0 ALIGNMENT 0 Y12-7g22.q1k chr15 62 180 526698 526697 F 119 0.00 1277 reject_low 1 ALIGNMENT 0 Y12-7g22.q1k chr15 643 857 527159 527158 F 215 0.00 1277 reject_low 1 ALIGNMENT 978 Y12-7g22.p1k chr14 29 1257 417567 418806 F 1229 94.96 1400 accept 0 ALIGNMENT 50 Y12-7g22.q1k chr15 181 642 526698 527159 F 462 71.21 1277 reject_low 1 ALIGNMENT 421 Y12-7h01.q1k chr02 799 40 575378 576134 C 760 86.84 1460 accept 0 ALIGNMENT 778 Y12-7h01.p1k chr02 86 1089 570732 571750 F 1004 94.32 1459 accept 0 ALIGNMENT 600 Y12-7h02.p1k chr16 1100 119 439311 440282 C 982 89.92 1544 reject_low 1 ALIGNMENT 634 Y12-7h02.p1k chr10 119 1100 200295 201265 F 982 91.14 1544 accept_trans 0 ALIGNMENT 579 Y12-7h02.p1k chr08 119 949 88363 89188 F 831 92.54 1544 reject_low 2 ALIGNMENT 673 Y12-7h03.p1k chr12 64 1053 102021 102996 F 990 91.41 1556 accept 0 ALIGNMENT 760 Y12-7h04.p1k chr07 19 1019 653005 654017 F 1001 93.71 1420 accept 0 ALIGNMENT 709 Y12-7h04.q1k chr07 941 38 658753 659644 C 904 95.13 1433 accept 0 ALIGNMENT 275 Y12-7h05.q1k chr16 656 1133 193905 194386 F 478 86.40 1364 reject_low 1 ALIGNMENT 412 Y12-7h05.q1k chr16 79 829 193403 194141 F 751 86.28 1364 accept 0 ALIGNMENT 539 Y12-7h05.p1k chr16 780 21 197804 198560 C 760 92.24 1469 accept 0 ALIGNMENT 62 Y12-7h05.q1k chr16 592 703 194031 194141 F 112 86.61 1364 reject_low 4 ALIGNMENT 92 Y12-7h05.q1k chr16 592 766 193968 194141 F 175 85.14 1364 reject_low 3 ALIGNMENT 111 Y12-7h05.q1k chr16 719 892 193905 194078 F 174 87.93 1364 reject_low 2 ALIGNMENT 1010 Y12-7h06.p1k chr10 24 1201 546413 547602 F 1178 96.10 1438 accept 0 ALIGNMENT 986 Y12-7h06.q1k chr10 1158 35 550652 551775 C 1124 96.71 1350 accept 0 ALIGNMENT 996 Y12-7h08.q1k chr04 39 1282 375291 376533 F 1244 94.77 1390 accept 0 ALIGNMENT 1044 Y12-7h08.p1k chr04 1237 22 378130 379362 C 1216 96.30 1533 accept 0 ALIGNMENT 0 Y12-7h09.q1k chr03 335 62 163057 163056 C 274 0.00 1385 reject_low 1 ALIGNMENT 952 Y12-7h09.p1k chr05 30 1219 117837 119040 F 1190 94.20 1509 accept 0 ALIGNMENT 0 Y12-7h09.q1k chr03 824 453 162941 162940 C 372 0.00 1385 reject_low 1 ALIGNMENT 938 Y12-7h09.q1k chr05 1198 36 122051 123214 C 1163 95.36 1385 accept 0 ALIGNMENT 87 Y12-7h09.q1k chr03 452 336 162940 163056 C 117 92.31 1385 reject_low 1 ALIGNMENT 847 Y12-7h10.p1k chr05 979 28 341979 342946 C 952 97.58 1350 accept 0 ALIGNMENT 931 Y12-7h10.q1k chr05 39 1162 338528 339662 F 1124 95.11 1391 accept 0 ALIGNMENT 770 Y12-7h11.q1k chr16 42 1070 929279 930325 F 1029 93.39 1335 accept 0 ALIGNMENT 909 Y12-7h11.p1k chr16 1062 20 934132 935190 C 1043 97.03 1382 accept 0 ALIGNMENT 1006 Y12-7h12.p1k chr16 24 1175 865694 866862 F 1152 97.31 1452 accept 0 ALIGNMENT 952 Y12-7h12.q1k chr16 1114 37 869497 870584 C 1078 97.22 1349 accept 0 ALIGNMENT 1000 Y12-7h13.q1k chr12 1216 32 285269 286471 C 1185 96.03 1362 accept 0 ALIGNMENT 830 Y12-7h13.p1k chr12 32 1081 281857 282926 F 1050 94.29 1405 accept 0 ALIGNMENT 929 Y12-7h14.q1k chr16 1147 35 686367 687501 C 1113 96.23 1325 accept 0 ALIGNMENT 1080 Y12-7h14.p1k chr16 25 1232 683169 684386 F 1208 97.27 1467 accept 0 ALIGNMENT 982 Y12-7h15.p1k chr10 17 1214 107397 108625 F 1198 95.74 1454 accept 0 ALIGNMENT 961 Y12-7h15.q1k chr10 1233 36 110984 112189 C 1198 94.57 1376 accept 0 ALIGNMENT 1021 Y12-7h16.p1k chr13 21 1223 54221 55434 F 1203 96.34 1480 accept 0 ALIGNMENT 950 Y12-7h16.q1k chr13 1127 35 56985 58092 C 1093 96.98 1330 accept 0 ALIGNMENT 758 Y12-7h17.p1k chr06 188 1206 29247 30260 F 1019 92.93 1505 accept 0 ALIGNMENT 310 Y12-7h17.q1k chr15 32 887 76117 76972 F 856 79.79 1334 reject_low 1 ALIGNMENT 988 Y12-7h17.q1k chr06 1243 32 32914 34133 C 1212 95.05 1334 accept 0 ALIGNMENT 1013 Y12-7h18.q1k chr04 34 1243 573741 574957 F 1210 95.95 1324 accept 0 ALIGNMENT 966 Y12-7h18.p1k chr04 1179 19 578380 579555 C 1161 95.87 1420 accept 0 ALIGNMENT 1002 Y12-7h19.q1k chr09 1296 33 133798 135077 C 1264 94.30 1309 accept 0 ALIGNMENT 968 Y12-7h19.p1k chr09 29 1126 129723 130830 F 1098 97.27 1391 accept 0 ALIGNMENT 62 Y12-7h19.q1k chr09 257 33 132656 132880 C 225 76.44 1309 reject_low 1 ALIGNMENT 0 Y12-7h19.q1k chr09 894 258 132657 132656 C 637 0.00 1309 reject_low 1 ALIGNMENT 20 Y12-7h20.p1k chr13 576 655 587627 587704 F 80 87.50 1433 reject_low 1 ALIGNMENT 925 Y12-7h20.q1k chr07 1115 37 434579 435660 C 1079 96.11 1325 accept 0 ALIGNMENT 1004 Y12-7h20.p1k chr07 21 1230 430816 432040 F 1210 95.54 1433 accept 0 ALIGNMENT 0 Y12-7h20.p1k chr13 62 575 587627 587626 F 514 0.00 1433 reject_low 1 ALIGNMENT 0 Y12-7h20.p1k chr13 656 825 587704 587703 F 170 0.00 1433 reject_low 1 ALIGNMENT 937 Y12-7h22.q1k chr04 1189 39 826241 827407 C 1151 95.66 1271 accept 0 ALIGNMENT 1011 Y12-7h22.p1k chr04 23 1192 823131 824311 F 1170 96.75 1392 accept 0 ALIGNMENT 988 Y12-7h23.p1k chr10 1141 22 337386 338523 C 1120 96.88 1324 accept 0 ALIGNMENT 172 Y12-7h23.p1k chr07 22 364 883479 883822 F 343 83.67 1324 reject_low 2 ALIGNMENT 0 Y12-7h23.p1k chr07 365 859 883822 883821 F 495 0.00 1324 reject_low 2 ALIGNMENT 959 Y12-7h23.q1k chr10 39 1173 333527 334676 F 1135 95.59 1227 accept 0 ALIGNMENT 206 Y12-7h23.p1k chr10 22 371 454259 454609 F 350 86.57 1324 reject_low 1 ALIGNMENT 0 Y12-7h23.p1k chr10 372 859 454609 454608 F 488 0.00 1324 reject_low 1 ALIGNMENT 341 Y12-7h24.q1k chr04 943 179 826562 827319 C 765 82.48 1457 accept 0 ALIGNMENT 553 Y12-7i07.p1k chr04 71 977 43188 44095 F 907 88.42 1496 accept 0 ALIGNMENT 365 Y12-7i09.q1k chr08 32 578 216220 216765 F 547 90.31 1434 accept_chi 0 ALIGNMENT 161 Y12-7i09.p1k chr07 467 138 742122 742444 C 330 84.85 1554 accept_chi 1 ALIGNMENT 283 Y12-7i10.q1k chr04 469 47 252224 252644 C 423 89.83 1434 accept 0 ALIGNMENT 31 Y12-7i11.q1k chr08 40 73 214222 214255 F 34 97.06 1367 reject_low 3 ALIGNMENT 0 Y12-7i11.p1k chr08 931 62 216809 216808 C 870 0.00 1517 accept 0 reject_low 3 ALIGNMENT 0 Y12-7i11.q1k chr08 74 731 214256 214264 F 658 0.00 1367 reject_low 3 ALIGNMENT 0 Y12-7i11.p1k chr08 860 831 214267 214266 C 30 0.00 1517 reject_low 1 ALIGNMENT 0 Y12-7i11.q1k chr08 630 782 216808 216807 F 153 0.00 1367 accept 0 ALIGNMENT 300 Y12-7i11.q1k chr08 630 1084 212158 212623 F 455 90.99 1367 reject_low 1 ALIGNMENT 728 Y12-7i11.p1k chr08 830 25 214266 215076 C 806 98.39 1517 reject_low 1 ALIGNMENT 794 Y12-7i11.p1k chr08 931 25 212158 213078 C 907 97.57 1517 reject_low 2 ALIGNMENT 142 Y12-7i11.p1k chr08 1216 932 216514 216808 C 285 85.96 1517 accept 0 reject_low 3 ALIGNMENT 547 Y12-7i11.q1k chr08 40 629 216220 216808 F 590 98.98 1367 accept 0 ALIGNMENT 227 Y12-7i11.q1k chr08 732 1084 214265 214621 F 353 90.37 1367 reject_low 3 ALIGNMENT 0 Y12-7i11.q1k chr08 62 629 212158 212157 F 568 0.00 1367 reject_low 1 ALIGNMENT 130 Y12-7i12.q1k chr04 317 65 252380 252628 C 253 85.77 1375 accept 0 ALIGNMENT 531 Y12-7i13.q1k chr12 797 4 466489 467285 C 794 89.80 1210 manual 1 ALIGNMENT 550 Y12-7i13.p1k chr12 961 31 782512 783423 C 931 88.72 1530 accept_chi 0 ALIGNMENT 530 Y12-7i13.q1k chr12 767 4 457383 458148 C 764 90.58 1210 manual 2 ALIGNMENT 785 Y12-7i16.q1k chr15 1003 36 290795 291764 C 968 95.14 1334 accept 0 ALIGNMENT 400 Y12-7i17.q1k chr07 79 765 153704 154383 F 687 87.34 1456 accept 0 ALIGNMENT 314 Y12-7i18.p1k chr14 427 20 114352 114763 C 408 93.38 1422 accept 0 ALIGNMENT 914 Y12-7i18.q1k chr14 36 1093 110847 111901 F 1058 96.31 1402 accept 0 ALIGNMENT 387 Y12-7i19.q1k chr11 30 506 43805 44280 F 477 94.55 1374 accept 0 ALIGNMENT 235 Y12-7i24.p1k chr13 33 514 514662 515120 F 482 86.51 1631 accept 0 ALIGNMENT 315 Y12-7j07.q1k chr12 40 762 823022 823753 F 723 84.23 1456 accept 0 ALIGNMENT 0 Y12-7j13.q1k chr04 450 600 437515 437514 F 151 0.00 1334 reject_low 17 ALIGNMENT 0 Y12-7j13.q1k chr02 78 62 36219 36218 C 17 0.00 1334 reject_low 6 ALIGNMENT 337 Y12-7j13.q1k chr07 78 449 110858 111229 F 372 98.39 1334 reject_low 11 ALIGNMENT 353 Y12-7j13.q1k chr02 451 79 35846 36218 C 373 99.73 1334 reject_low 6 ALIGNMENT 0 Y12-7j13.q1k chr16 78 62 443110 443109 C 17 0.00 1334 reject_low 10 ALIGNMENT 0 Y12-7j13.q1k chr07 62 77 110858 110857 F 16 0.00 1334 reject_low 11 ALIGNMENT 0 Y12-7j13.q1k chr08 450 600 91757 91756 F 151 0.00 1334 reject_low 2 ALIGNMENT 393 Y12-7j13.q1k chr16 449 1 436887 437335 C 449 97.77 1334 reject_low 3 ALIGNMENT 0 Y12-7j13.q1k chr09 78 62 197021 197020 C 17 0.00 1334 reject_low 7 ALIGNMENT 0 Y12-7j13.q1k chr15 62 78 703773 703772 F 17 0.00 1334 reject_low 19 ALIGNMENT 311 Y12-7j13.q1k chr07 453 79 931170 931543 C 375 96.00 1334 reject_low 16 ALIGNMENT 405 Y12-7j13.q1k chr10 1 449 203241 203689 F 449 98.66 1334 reject_low 1 ALIGNMENT 0 Y12-7j13.q1k chr05 78 62 354727 354726 C 17 0.00 1334 reject_low 13 ALIGNMENT 0 Y12-7j13.q1k chr14 452 600 561980 561979 F 149 0.00 1334 reject_low 8 ALIGNMENT 339 Y12-7j13.q1k chr16 449 79 442739 443109 C 371 98.65 1334 reject_low 10 ALIGNMENT 341 Y12-7j13.q1k chr14 79 451 561608 561980 F 373 98.66 1334 reject_low 8 ALIGNMENT 0 Y12-7j13.q1k chr02 600 450 643484 643483 C 151 0.00 1334 reject_low 12 ALIGNMENT 0 Y12-7j13.q1k chr14 62 78 561608 561607 F 17 0.00 1334 reject_low 8 ALIGNMENT 352 Y12-7j13.q1k chr13 79 453 503770 504144 F 375 99.47 1334 reject_low 4 ALIGNMENT 332 Y12-7j13.q1k chr14 451 79 632119 632491 C 373 97.86 1334 reject_low 14 ALIGNMENT 0 Y12-7j13.q1k chr10 450 600 197834 197833 F 151 0.00 1334 reject_low 5 ALIGNMENT 314 Y12-7j13.q1k chr04 78 449 437145 437515 F 372 96.51 1334 reject_low 17 ALIGNMENT 0 Y12-7j13.q1k chr14 238 600 96609 96608 F 363 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-7j13.q1k chr10 450 600 203689 203688 F 151 0.00 1334 reject_low 1 ALIGNMENT 0 Y12-7j13.q1k chr14 78 62 632492 632491 C 17 0.00 1334 reject_low 14 ALIGNMENT 330 Y12-7j13.q1k chr05 452 79 354353 354726 C 374 97.59 1334 reject_low 13 ALIGNMENT 70 Y12-7j13.q1k chr11 450 545 313746 313838 F 96 94.79 1334|0,3 accept 0 ALIGNMENT 0 Y12-7j13.q1k chr13 62 78 503770 503769 F 17 0.00 1334 reject_low 4 ALIGNMENT 60 Y12-7j13.q1k chr15 365 451 710025 710110 F 87 94.25 1334|3,0 reject_low 19 ALIGNMENT 0 Y12-7j13.q1k chr13 600 450 808537 808536 C 151 0.00 1334 reject_low 15 ALIGNMENT 0 Y12-7j13.q1k chr10 62 76 197462 197461 F 15 0.00 1334 reject_low 5 ALIGNMENT 0 Y12-7j13.q1k chr08 62 78 85535 85534 F 17 0.00 1334 reject_low 9 ALIGNMENT 0 Y12-7j13.q1k chr04 62 77 437145 437144 F 16 0.00 1334 reject_low 17 ALIGNMENT 0 Y12-7j13.q1k chr16 600 450 436888 436887 C 151 0.00 1334 reject_low 3 ALIGNMENT 0 Y12-7j13.q1k chr07 78 62 931544 931543 C 17 0.00 1334 reject_low 16 ALIGNMENT 0 Y12-7j13.q1k chr16 600 450 442740 442739 C 151 0.00 1334 reject_low 10 ALIGNMENT 0 Y12-7j13.q1k chr08 450 600 85905 85904 F 151 0.00 1334 reject_low 9 ALIGNMENT 0 Y12-7j13.q1k chr02 600 452 35847 35846 C 149 0.00 1334 reject_low 6 ALIGNMENT 351 Y12-7j13.q1k chr09 449 79 196650 197020 C 371 99.73 1334 reject_low 7 ALIGNMENT 0 Y12-7j13.q1k chr13 454 600 504144 504143 F 147 0.00 1334 reject_low 4 ALIGNMENT 0 Y12-7j13.q1k chr02 77 62 643855 643854 C 16 0.00 1334 reject_low 12 ALIGNMENT 0 Y12-7j13.q1k chr14 62 77 96450 96449 F 16 0.00 1334 reject_low 18 ALIGNMENT 0 Y12-7j13.q1k chr11 62 449 313746 313745 F 388 0.00 1334 accept 0 ALIGNMENT 132 Y12-7j13.q1k chr11 540 712 314170 314343 F 173 93.06 1334|3,0 accept 0 ALIGNMENT 0 Y12-7j13.q1k chr15 368 367 704062 710027 F 0 0.00 1334 reject_low 19 ALIGNMENT 261 Y12-7j13.q1k chr15 79 369 703773 704063 F 291 97.94 1334|0,2 reject_low 19 ALIGNMENT 148 Y12-7j13.q1k chr14 78 237 96450 96609 F 160 98.75 1334 reject_low 18 ALIGNMENT 329 Y12-7j13.q1k chr13 449 78 808536 808906 C 372 97.85 1334 reject_low 15 ALIGNMENT 334 Y12-7j13.q1k chr02 449 78 643483 643854 C 372 98.12 1334 reject_low 12 ALIGNMENT 353 Y12-7j13.q1k chr10 77 449 197462 197834 F 373 99.73 1334 reject_low 5 ALIGNMENT 0 Y12-7j13.q1k chr15 452 600 710110 710109 F 149 0.00 1334 reject_low 19 ALIGNMENT 393 Y12-7j13.q1k chr08 1 449 91309 91757 F 449 97.77 1334 reject_low 2 ALIGNMENT 0 Y12-7j13.q1k chr07 450 600 111229 111228 F 151 0.00 1334 reject_low 11 ALIGNMENT 0 Y12-7j13.q1k chr14 600 452 632120 632119 C 149 0.00 1334 reject_low 14 ALIGNMENT 0 Y12-7j13.q1k chr11 543 542 313836 314172 F 0 0.00 1334 accept 0 ALIGNMENT 342 Y12-7j13.q1k chr08 79 449 85535 85905 F 371 98.92 1334 reject_low 9 ALIGNMENT 0 Y12-7j13.q1k chr05 600 453 354354 354353 C 148 0.00 1334 reject_low 13 ALIGNMENT 0 Y12-7j13.q1k chr09 600 450 196651 196650 C 151 0.00 1334 reject_low 7 ALIGNMENT 0 Y12-7j13.q1k chr07 600 454 931171 931170 C 147 0.00 1334 reject_low 16 ALIGNMENT 0 Y12-7j13.q1k chr13 77 62 808907 808906 C 16 0.00 1334 reject_low 15 ALIGNMENT 1003 Y12-7j14.p1k chr07 1189 32 332764 333938 C 1158 96.72 1452 accept 0 ALIGNMENT 227 Y12-7j15.q1k chr08 150 521 85535 85905 F 372 87.90 1573 ambiguous_trans 5 ALIGNMENT 229 Y12-7j15.q1k chr08 132 521 91369 91757 F 390 87.18 1573 ambiguous_trans 1 ALIGNMENT 228 Y12-7j15.q1k chr10 149 521 197463 197834 F 373 87.94 1573 ambiguous_trans 4 ALIGNMENT 82 Y12-7j15.q1k chr14 149 308 96450 96609 F 160 84.38 1573 reject_low 18 ALIGNMENT 189 Y12-7j15.q1k chr07 521 150 931174 931543 C 372 84.68 1573 ambiguous_trans_ua 16 ALIGNMENT 238 Y12-7j15.q1k chr10 132 521 203301 203689 F 390 87.95 1573 ambiguous_trans 0 ALIGNMENT 207 Y12-7j15.q1k chr14 522 150 632120 632491 C 373 86.06 1573 ambiguous_trans_ua 13 ALIGNMENT 213 Y12-7j15.q1k chr07 149 521 110858 111229 F 373 86.60 1573 ambiguous_trans_ua 10 ALIGNMENT 228 Y12-7j15.q1k chr02 522 150 35847 36218 C 373 87.94 1573 ambiguous_trans_ua 3 ALIGNMENT 194 Y12-7j15.q1k chr04 148 521 437144 437515 F 374 85.03 1573 ambiguous_trans_ua 15 ALIGNMENT 218 Y12-7j15.q1k chr16 521 150 442739 443109 C 372 87.10 1573 ambiguous_trans 9 ALIGNMENT 207 Y12-7j15.q1k chr05 522 150 354355 354726 C 373 86.06 1573 ambiguous_trans_ua 12 ALIGNMENT 174 Y12-7j15.q1k chr15 150 440 703773 704063 F 291 87.29 1573 ambiguous_trans_ua 17 ALIGNMENT 208 Y12-7j15.q1k chr13 521 149 808536 808906 C 373 86.33 1573 ambiguous_trans_ua 14 ALIGNMENT 210 Y12-7j15.q1k chr02 521 149 643483 643854 C 373 86.33 1573 ambiguous_trans_ua 11 ALIGNMENT 227 Y12-7j15.q1k chr13 150 521 503770 504140 F 372 87.90 1573 ambiguous_trans_ua 7 ALIGNMENT 216 Y12-7j15.q1k chr14 177 522 561635 561979 F 346 88.44 1573 ambiguous_trans_ua 8 ALIGNMENT 227 Y12-7j15.q1k chr09 521 150 196650 197020 C 372 87.90 1573 ambiguous_trans_ua 6 ALIGNMENT 229 Y12-7j15.q1k chr16 521 132 436887 437275 C 390 87.18 1573 ambiguous_trans 2 ALIGNMENT 398 Y12-7j17.p1k chr02 24 624 123577 124165 F 601 90.85 1521 accept_chi 0 ALIGNMENT 369 Y12-7j17.q1k chr13 908 231 783162 783824 C 678 86.73 1450 accept_chi 1 ALIGNMENT 551 Y12-7j19.q1k chr13 873 9 783099 783959 C 865 89.13 1302 accept 0 ALIGNMENT 469 Y12-7j22.q1k chr04 887 101 826582 827360 C 787 87.93 1404 accept 0 ALIGNMENT 533 Y12-7j22.p1k chr04 129 1006 823237 824105 F 878 88.38 1471 accept 0 ALIGNMENT 180 Y12-7j23.p1k chr10 20 367 454262 454609 F 348 84.77 1429 reject_low 1 ALIGNMENT 149 Y12-7j23.p1k chr07 20 360 883482 883822 F 341 82.11 1429 reject_low 2 ALIGNMENT 714 Y12-7j23.p1k chr10 884 24 337657 338515 C 861 95.01 1429 accept 0 ALIGNMENT 0 Y12-7j23.p1k chr07 361 571 883822 883821 F 211 0.00 1429 reject_low 2 ALIGNMENT 0 Y12-7j23.p1k chr10 368 571 454609 454608 F 204 0.00 1429 reject_low 1 ALIGNMENT 618 Y12-7j24.q1k chr04 970 86 826485 827360 C 885 91.64 1382 accept 0 ALIGNMENT 740 Y12-7k01.q1k chr15 33 910 423138 424001 F 878 96.81 1640 accept 0 ALIGNMENT 927 Y12-7k03.q1k chr07 1086 33 54066 55119 C 1054 96.68 1346 accept 0 ALIGNMENT 0 Y12-7k04.q1k chr13 379 380 609248 609586 C 0 0.00 1335 reject_low 1 ALIGNMENT 28 Y12-7k04.q1k chr13 495 446 609210 609259 C 50 86.00 1335 reject_low 17 ALIGNMENT 0 Y12-7k04.q1k chr13 196 161 609686 609751 C 36 0.00 1335 reject_low 4 ALIGNMENT 21 Y12-7k04.q1k chr13 139 98 609146 609187 C 42 83.33 1335 reject_low 13 ALIGNMENT 0 Y12-7k04.q1k chr13 872 140 609147 609146 C 733 0.00 1335 reject_low 13 ALIGNMENT 0 Y12-7k04.q1k chr13 551 552 609178 609702 C 0 0.00 1335 reject_low 14 ALIGNMENT 125 Y12-7k04.q1k chr13 265 44 608945 609169 C 222 86.49 1335 reject_low 2 ALIGNMENT 22 Y12-7k04.q1k chr13 69 35 609246 609280 C 35 88.57 1335 reject_low 13 ALIGNMENT 20 Y12-7k04.q1k chr13 393 368 609906 609931 C 26 92.31 1335 reject_low 5 ALIGNMENT 84 Y12-7k04.q1k chr13 559 284 609224 609490 C 276 78.99 1335|6,0 reject_low 11 ALIGNMENT 0 Y12-7k04.q1k chr13 97 70 609188 609245 C 28 0.00 1335 reject_low 13 ALIGNMENT 106 Y12-7k04.q1k chr13 555 391 609699 609860 C 165 89.70 1335|4,0 reject_low 14 ALIGNMENT 0 Y12-7k04.q1k chr13 283 62 609836 609835 C 222 0.00 1335 reject_low 15 ALIGNMENT 0 Y12-7k04.q1k chr13 161 162 609178 609594 C 0 0.00 1335 reject_low 7 ALIGNMENT 0 Y12-7k04.q1k chr13 71 72 609292 609345 C 0 0.00 1335 reject_low 6 ALIGNMENT 44 Y12-7k04.q1k chr13 265 74 608993 609187 C 192 76.56 1335 reject_low 8 ALIGNMENT 98 Y12-7k04.q1k chr13 384 161 609582 609805 C 224 83.48 1335|5,0 reject_low 1 ALIGNMENT 0 Y12-7k04.q1k chr13 160 62 609806 609805 C 99 0.00 1335 reject_low 1 ALIGNMENT 0 Y12-7k04.q1k chr13 283 218 609491 609616 C 66 0.00 1335 reject_low 11 ALIGNMENT 616 Y12-7k04.q1k chr13 1178 74 608319 609496 C 1105 86.97 1335 accept 0 ALIGNMENT 225 Y12-7k04.q1k chr13 750 449 608754 609049 C 302 93.71 1335 reject_low 1 ALIGNMENT 0 Y12-7k04.q1k chr13 444 391 609861 609836 C 54 0.00 1335 reject_low 12 ALIGNMENT 0 Y12-7k04.q1k chr13 547 496 609182 609209 C 52 0.00 1335 reject_low 17 ALIGNMENT 51 Y12-7k04.q1k chr13 480 284 609642 609835 C 197 78.17 1335 reject_low 15 ALIGNMENT 53 Y12-7k04.q1k chr13 441 224 608982 609187 C 218 77.98 1335 reject_low 9 ALIGNMENT 39 Y12-7k04.q1k chr13 208 113 609545 609643 C 96 81.25 1335 reject_low 9 ALIGNMENT 0 Y12-7k04.q1k chr13 872 266 608946 608945 C 607 0.00 1335 reject_low 2 ALIGNMENT 0 Y12-7k04.q1k chr13 553 554 609176 609229 C 0 0.00 1335 reject_low 11 ALIGNMENT 0 Y12-7k04.q1k chr13 223 209 609188 609544 C 15 0.00 1335 reject_low 9 ALIGNMENT 0 Y12-7k04.q1k chr13 872 140 608922 608921 C 733 0.00 1335 reject_low 3 ALIGNMENT 0 Y12-7k04.q1k chr13 872 337 609028 609027 C 536 0.00 1335 reject_low 6 ALIGNMENT 966 Y12-7k04.p1k chr13 21 1206 603132 604306 F 1186 95.36 1472 accept 0 ALIGNMENT 0 Y12-7k04.q1k chr13 872 292 609046 609045 C 581 0.00 1335 reject_low 7 ALIGNMENT 0 Y12-7k04.q1k chr13 872 580 609307 609306 C 293 0.00 1335 reject_low 4 ALIGNMENT 27 Y12-7k04.q1k chr13 597 548 609132 609181 C 50 86.00 1335|0,4 reject_low 11,14,15,16,17 ALIGNMENT 0 Y12-7k04.q1k chr13 872 266 608994 608993 C 607 0.00 1335 reject_low 8 ALIGNMENT 208 Y12-7k04.q1k chr13 579 197 609306 609685 C 383 86.95 1335 reject_low 4 ALIGNMENT 27 Y12-7k04.q1k chr13 403 374 609224 609253 C 30 96.67 1335|0,6 reject_low 1 ALIGNMENT 60 Y12-7k04.q1k chr13 165 71 609591 609685 C 95 88.42 1335|4,0 reject_low 7 ALIGNMENT 0 Y12-7k04.q1k chr13 872 394 609907 609906 C 479 0.00 1335 reject_low 5 ALIGNMENT 76 Y12-7k04.q1k chr13 139 34 608921 609026 C 106 91.51 1335 reject_low 3 ALIGNMENT 0 Y12-7k04.q1k chr13 872 595 609364 609363 C 278 0.00 1335 reject_low 10 ALIGNMENT 0 Y12-7k04.q1k chr13 547 516 609182 609582 C 32 0.00 1335 reject_low 15 ALIGNMENT 0 Y12-7k04.q1k chr13 872 598 609133 609132 C 275 0.00 1335 reject_low 11,14,15,16,17 ALIGNMENT 0 Y12-7k04.q1k chr13 390 391 609861 609836 C 0 0.00 1335 reject_low 14 ALIGNMENT 0 Y12-7k04.q1k chr13 445 391 609260 609836 C 55 0.00 1335 reject_low 17 ALIGNMENT 97 Y12-7k04.q1k chr13 217 34 609617 609806 C 184 85.87 1335 reject_low 11 ALIGNMENT 0 Y12-7k04.q1k chr13 454 161 609644 609751 C 294 0.00 1335 reject_low 16 ALIGNMENT 0 Y12-7k04.q1k chr13 872 751 608755 608754 C 122 0.00 1335 reject_low 1 ALIGNMENT 0 Y12-7k04.q1k chr13 872 442 608983 608982 C 431 0.00 1335 reject_low 9 ALIGNMENT 0 Y12-7k04.q1k chr13 112 62 609644 609643 C 51 0.00 1335 reject_low 9 ALIGNMENT 0 Y12-7k04.q1k chr13 73 72 609188 609345 C 2 0.00 1335 reject_low 8 ALIGNMENT 47 Y12-7k04.q1k chr13 594 338 609363 609628 C 257 75.10 1335 reject_low 10 ALIGNMENT 0 Y12-7k04.q1k chr13 481 481 609617 609641 C 1 0.00 1335 reject_low 15 ALIGNMENT 59 Y12-7k04.q1k chr13 291 158 609045 609181 C 134 82.09 1335|0,4 reject_low 7 ALIGNMENT 0 Y12-7k04.q1k chr13 334 62 609893 609892 C 273 0.00 1335 reject_low 12,14,17 ALIGNMENT 37 Y12-7k04.q1k chr13 71 34 609346 609383 C 38 100.00 1335 reject_low 6,8 ALIGNMENT 40 Y12-7k04.q1k chr13 526 455 609572 609643 C 72 86.11 1335 reject_low 16 ALIGNMENT 0 Y12-7k04.q1k chr13 448 404 609050 609223 C 45 0.00 1335 reject_low 1 ALIGNMENT 30 Y12-7k04.q1k chr13 160 74 609752 609841 C 87 79.31 1335 reject_low 4,10,16 ALIGNMENT 0 Y12-7k04.q1k chr13 872 598 609706 609705 C 275 0.00 1335 reject_low 12 ALIGNMENT 21 Y12-7k04.q1k chr13 515 482 609583 609616 C 34 88.24 1335 reject_low 15 ALIGNMENT 83 Y12-7k04.q1k chr13 336 71 609027 609292 C 266 79.32 1335|0,1 reject_low 6 ALIGNMENT 0 Y12-7k04.q1k chr13 337 161 609629 609751 C 177 0.00 1335 reject_low 10 ALIGNMENT 0 Y12-7k04.q1k chr13 367 62 609932 609931 C 306 0.00 1335 reject_low 5 ALIGNMENT 26 Y12-7k04.q1k chr13 390 335 609837 609892 C 56 82.14 1335 reject_low 12,14,17 ALIGNMENT 30 Y12-7k04.q1k chr13 597 445 609705 609860 C 153 75.82 1335 reject_low 12 ALIGNMENT 0 Y12-7k04.q1k chr13 547 527 609182 609571 C 21 0.00 1335 reject_low 16 ALIGNMENT 933 Y12-7k05.p1k chr14 1133 23 241771 242890 C 1111 95.50 1468 accept 0 ALIGNMENT 321 Y12-7k05.q1k chr14 1 566 238406 238963 F 566 87.28 1353 accept 0 ALIGNMENT 878 Y12-7k06.q1k chr14 1227 40 230070 231265 C 1188 93.10 1322 accept 0 ALIGNMENT 956 Y12-7k06.p1k chr14 19 1151 227195 228326 F 1133 95.85 1504 accept 0 ALIGNMENT 980 Y12-7k08.p1k chr04 1225 28 766822 768031 C 1198 95.58 1496 accept 0 ALIGNMENT 881 Y12-7k08.q1k chr04 36 1015 763506 764494 F 980 98.16 1351 accept 0 ALIGNMENT 0 Y12-7k09.p1k chr16 62 795 281055 281054 F 734 0.00 1479 reject_low 1 ALIGNMENT 179 Y12-7k09.p1k chr16 796 1137 281055 281398 F 342 85.96 1479 reject_low 1 ALIGNMENT 927 Y12-7k09.q1k chr15 36 1082 776767 777822 F 1047 96.85 1325 accept 0 ALIGNMENT 982 Y12-7k09.p1k chr15 1180 18 780204 781374 C 1163 95.87 1479 accept 0 ALIGNMENT 868 Y12-7k11.p1k chr05 17 1074 421191 422249 F 1058 95.27 1532 accept 0 ALIGNMENT 902 Y12-7k11.q1k chr05 1037 36 424192 425200 C 1002 98.30 1341 accept 0 ALIGNMENT 900 Y12-7k12.p1k chr04 21 1047 246542 247573 F 1027 96.88 1439 accept 0 ALIGNMENT 871 Y12-7k12.q1k chr04 1081 40 251624 252670 C 1042 95.68 1351 accept 0 ALIGNMENT 871 Y12-7k13.p1k chr12 996 17 956306 957286 C 980 97.45 1453 accept 0 ALIGNMENT 693 Y12-7k13.q1k chr12 35 819 953143 953927 F 785 97.07 1302 accept 0 ALIGNMENT 532 Y12-7k14.q1k chr15 658 1 923871 924527 C 658 93.92 1219 accept 0 ALIGNMENT 970 Y12-7k15.q1k chr12 1187 34 457035 458207 C 1154 95.49 1294 accept 0 ALIGNMENT 970 Y12-7k15.q1k chr12 1187 34 466172 467344 C 1154 95.49 1294 accept 1 ALIGNMENT 1065 Y12-7k15.p1k chr12 22 1321 462116 463425 F 1300 95.00 1485 accept 1 ALIGNMENT 1065 Y12-7k15.p1k chr12 22 1321 452979 454288 F 1300 95.00 1485 accept 0 ALIGNMENT 931 Y12-7k16.q1k chr14 37 1068 649698 650734 F 1032 97.38 1293 accept 0 ALIGNMENT 938 Y12-7k16.p1k chr14 1083 20 653167 654234 C 1064 96.33 1461 accept 0 ALIGNMENT 905 Y12-7k17.q1k chr07 38 1140 153666 154779 F 1103 95.10 1296 accept 0 ALIGNMENT 962 Y12-7k17.p1k chr07 1178 23 157381 158551 C 1156 95.93 1424 accept 0 ALIGNMENT 484 Y12-7k18.q1k chr14 687 30 244115 244771 C 658 92.25 1412 accept 0 ALIGNMENT 456 Y12-7k20.q1k chr14 665 39 244143 244765 C 627 92.03 1317 accept 0 ALIGNMENT 928 Y12-7k21.q1k chr15 39 1132 48821 49926 F 1094 96.16 1267 accept 0 ALIGNMENT 896 Y12-7k21.p1k chr15 1184 17 53251 54396 C 1168 95.12 1434 accept 0 ALIGNMENT 918 Y12-7k23.q1k chr09 1096 39 228895 229938 C 1058 97.45 1280 accept 0 ALIGNMENT 983 Y12-7k23.p1k chr09 22 1185 225147 226327 F 1164 96.56 1344 accept 0 ALIGNMENT 783 Y12-7k24.p1k chr04 89 1145 83640 84686 F 1057 92.53 1427 accept 0 ALIGNMENT 871 Y12-7k24.q1k chr04 1038 34 87070 88065 C 1005 97.11 1311 accept 0 ALIGNMENT 490 Y12-7l02.q1k chr05 32 699 80735 81394 F 668 92.51 1405 accept 0 ALIGNMENT 137 Y12-7l03.p1k chr07 13 187 111055 111229 F 175 95.43 1467 reject_low 11 ALIGNMENT 0 Y12-7l03.p1k chr08 188 447 85905 85904 F 260 0.00 1467 reject_low 12 ALIGNMENT 305 Y12-7l03.p1k chr14 238 733 567994 568485 F 496 88.71 1467|3,0 accept 0 ALIGNMENT 120 Y12-7l03.p1k chr07 187 13 931174 931347 C 175 92.57 1467 reject_low 17 ALIGNMENT 0 Y12-7l03.p1k chr04 188 447 437515 437514 F 260 0.00 1467 reject_low 18 ALIGNMENT 140 Y12-7l03.p1k chr10 13 187 203515 203689 F 175 96.00 1467 reject_low 9 ALIGNMENT 686 Y12-7l03.q1k chr14 31 870 598309 599142 F 840 94.88 1407 reject_low 1 ALIGNMENT 0 Y12-7l03.p1k chr14 241 240 562032 567996 F 0 0.00 1467 accept 0 ALIGNMENT 0 Y12-7l03.p1k chr02 447 190 35847 35846 C 258 0.00 1467 reject_low 5 ALIGNMENT 94 Y12-7l03.p1k chr06 353 462 101362 101472 F 110 95.45 1467 reject_low 4 ALIGNMENT 27 Y12-7l03.p1k chr14 395 359 631884 631920 C 37 94.59 1467 reject_low 20 ALIGNMENT 0 Y12-7l03.p1k chr14 358 190 631921 632118 C 169 0.00 1467 reject_low 20 ALIGNMENT 684 Y12-7l03.q1k chr14 903 31 573058 573922 C 873 93.93 1407 accept 0 ALIGNMENT 112 Y12-7l03.p1k chr14 353 482 547088 547217 F 130 95.38 1467 reject_low 2 ALIGNMENT 0 Y12-7l03.p1k chr07 188 447 111229 111228 F 260 0.00 1467 reject_low 11 ALIGNMENT 0 Y12-7l03.p1k chr16 447 188 436888 436887 C 260 0.00 1467 reject_low 13 ALIGNMENT 0 Y12-7l03.p1k chr08 193 447 91762 91761 F 255 0.00 1467 reject_low 6 ALIGNMENT 131 Y12-7l03.p1k chr16 187 13 436887 437061 C 175 94.29 1467 reject_low 13 ALIGNMENT 0 Y12-7l03.p1k chr05 447 190 354355 354354 C 258 0.00 1467 reject_low 16 ALIGNMENT 102 Y12-7l03.p1k chr08 477 360 388880 388998 C 118 95.76 1467 reject_low 3 ALIGNMENT 0 Y12-7l03.p1k chr10 188 447 203689 203688 F 260 0.00 1467 reject_low 9 ALIGNMENT 0 Y12-7l03.p1k chr13 447 188 808537 808536 C 260 0.00 1467 reject_low 19 ALIGNMENT 0 Y12-7l03.p1k chr09 447 188 196651 196650 C 260 0.00 1467 reject_low 7 ALIGNMENT 0 Y12-7l03.p1k chr02 447 188 643484 643483 C 260 0.00 1467 reject_low 15 ALIGNMENT 124 Y12-7l03.p1k chr05 189 13 354354 354530 C 177 92.66 1467 reject_low 16 ALIGNMENT 0 Y12-7l03.p1k chr14 130 352 547088 547087 F 223 0.00 1467 reject_low 2 ALIGNMENT 142 Y12-7l03.p1k chr02 189 13 35846 36022 C 177 96.05 1467 reject_low 5 ALIGNMENT 128 Y12-7l03.p1k chr02 187 13 643483 643657 C 175 93.71 1467 reject_low 15 ALIGNMENT 189 Y12-7l03.p1k chr14 13 242 561804 562033 F 230 96.52 1467|0,2 accept 0 ALIGNMENT 0 Y12-7l03.p1k chr16 447 188 442740 442739 C 260 0.00 1467 reject_low 14 ALIGNMENT 131 Y12-7l03.p1k chr16 187 13 442739 442913 C 175 94.29 1467 reject_low 14 ALIGNMENT 140 Y12-7l03.p1k chr10 13 187 197660 197834 F 175 96.00 1467 reject_low 8 ALIGNMENT 133 Y12-7l03.p1k chr08 13 192 91583 91762 F 180 93.89 1467 reject_low 6 ALIGNMENT 0 Y12-7l03.p1k chr06 130 352 101362 101361 F 223 0.00 1467 reject_low 4 ALIGNMENT 0 Y12-7l03.p1k chr07 447 188 931175 931174 C 260 0.00 1467 reject_low 17 ALIGNMENT 0 Y12-7l03.p1k chr08 359 130 388999 388998 C 230 0.00 1467 reject_low 3 ALIGNMENT 117 Y12-7l03.p1k chr13 187 13 808536 808709 C 175 92.00 1467 reject_low 19 ALIGNMENT 140 Y12-7l03.p1k chr13 13 187 503966 504140 F 175 96.00 1467 reject_low 10 ALIGNMENT 140 Y12-7l03.p1k chr09 187 13 196650 196824 C 175 96.00 1467 reject_low 7 ALIGNMENT 0 Y12-7l03.p1k chr13 188 447 504140 504139 F 260 0.00 1467 reject_low 10 ALIGNMENT 117 Y12-7l03.p1k chr04 13 187 437342 437515 F 175 92.00 1467 reject_low 18 ALIGNMENT 0 Y12-7l03.p1k chr10 188 447 197834 197833 F 260 0.00 1467 reject_low 8 ALIGNMENT 0 Y12-7l03.p1k chr14 447 396 631885 631884 C 52 0.00 1467 reject_low 20 ALIGNMENT 137 Y12-7l03.p1k chr08 13 187 85731 85905 F 175 95.43 1467 reject_low 12 ALIGNMENT 124 Y12-7l03.p1k chr14 189 13 632119 632295 C 177 92.66 1467 reject_low 20 ALIGNMENT 860 Y12-7l04.q1k chr02 29 1023 344211 345210 F 995 96.98 1374 accept 0 ALIGNMENT 716 Y12-7l04.p1k chr05 18 844 27867 28677 F 827 97.46 1670 ambiguous_tel 1 ALIGNMENT 922 Y12-7l05.q1k chr05 1180 40 500162 501315 C 1141 94.92 1328 accept 0 ALIGNMENT 1012 Y12-7l05.p1k chr16 1208 22 437722 438917 C 1187 97.22 1455 ambiguous_trans 3 ALIGNMENT 1022 Y12-7l05.p1k chr10 22 1208 201659 202854 F 1187 97.47 1455 ambiguous_trans 1 ALIGNMENT 1012 Y12-7l05.p1k chr08 22 1208 89727 90922 F 1187 97.22 1455 ambiguous_trans 2 ALIGNMENT 334 Y12-7l06.q1k chr04 484 38 15805 16251 C 447 92.84 1352 reject_low 2 ALIGNMENT 0 Y12-7l06.q1k chr04 803 485 15806 15805 C 319 0.00 1352 reject_low 2 ALIGNMENT 921 Y12-7l06.p1k chr14 20 1116 10987 12090 F 1097 95.44 1466 ambiguous_tel 0 ALIGNMENT 873 Y12-7l06.q1k chr14 1057 38 13868 14879 C 1020 96.57 1352 ambiguous_tel 0 ALIGNMENT 870 Y12-7l06.q1k chr06 1057 38 11964 12976 C 1020 96.37 1352 ambiguous_tel 1 ALIGNMENT 909 Y12-7l06.p1k chr06 20 1116 9080 10183 F 1097 95.08 1466 ambiguous_tel 1 ALIGNMENT 0 Y12-7l06.q1k chr10 485 803 729910 729909 F 319 0.00 1352 reject_low 3 ALIGNMENT 334 Y12-7l06.q1k chr10 38 484 729464 729910 F 447 92.84 1352 reject_low 3 ALIGNMENT 927 Y12-7l07.p1k chr12 1052 23 827197 828231 C 1030 97.38 1445 accept 0 ALIGNMENT 881 Y12-7l07.q1k chr12 38 1129 823022 824137 F 1092 95.70 1342 accept 0 ALIGNMENT 923 Y12-7l09.p1k chr04 23 1159 755915 757070 F 1137 96.13 1448 accept 0 ALIGNMENT 952 Y12-7l09.q1k chr04 1201 36 759845 761027 C 1166 95.28 1347 accept 0 ALIGNMENT 942 Y12-7l10.q1k chr02 1118 32 392660 393743 C 1087 96.87 1362 accept 0 ALIGNMENT 950 Y12-7l10.p1k chr02 21 1200 389184 390364 F 1180 95.34 1511 accept 0 ALIGNMENT 808 Y12-7l11.p1k chr02 967 20 481826 482771 C 948 96.52 1501 accept 0 ALIGNMENT 60 Y12-7l11.p1k chr16 638 413 702878 703103 C 226 76.55 1501 reject_low 1 ALIGNMENT 0 Y12-7l11.p1k chr16 412 62 703104 703103 C 351 0.00 1501 reject_low 1 ALIGNMENT 857 Y12-7l11.q1k chr02 40 1087 479352 480399 F 1048 95.42 1392 accept 0 ALIGNMENT 0 Y12-7l11.p1k chr16 730 639 702879 702878 C 92 0.00 1501 reject_low 1 ALIGNMENT 871 Y12-7l12.p1k chr07 19 1040 845159 846191 F 1022 96.18 1415 accept 0 ALIGNMENT 0 Y12-7l12.p1k chr03 514 62 142770 142769 C 453 0.00 1415 reject_low 12 ALIGNMENT 0 Y12-7l12.p1k chr12 466 812 374306 374305 F 347 0.00 1415 reject_low 5 ALIGNMENT 0 Y12-7l12.p1k chr05 812 587 61891 61890 C 226 0.00 1415 reject_low 10 ALIGNMENT 0 Y12-7l12.p1k chr16 62 146 880382 880381 F 85 0.00 1415 reject_low 1 ALIGNMENT 74 Y12-7l12.p1k chr05 586 507 61890 61969 C 80 97.50 1415 reject_low 10 ALIGNMENT 156 Y12-7l12.p1k chr12 146 465 373999 374306 F 320 85.94 1415 reject_low 5 ALIGNMENT 0 Y12-7l12.p1k chr14 466 812 547045 547044 F 347 0.00 1415 reject_low 6 ALIGNMENT 122 Y12-7l12.p1k chr04 465 316 1175158 1175307 C 150 94.67 1415 reject_low 9 ALIGNMENT 0 Y12-7l12.p1k chr06 812 587 180967 180966 C 226 0.00 1415 reject_low 16 ALIGNMENT 0 Y12-7l12.p1k chr15 587 812 282234 282233 F 226 0.00 1415 reject_low 17 ALIGNMENT 153 Y12-7l12.p1k chr14 146 465 546738 547045 F 320 85.62 1415 reject_low 6 ALIGNMENT 0 Y12-7l12.p1k chr05 506 62 61970 61969 C 445 0.00 1415 reject_low 10 ALIGNMENT 0 Y12-7l12.p1k chr15 62 210 226751 226750 F 149 0.00 1415 reject_low 19 ALIGNMENT 70 Y12-7l12.p1k chr15 516 586 282164 282234 F 71 100.00 1415 reject_low 17 ALIGNMENT 0 Y12-7l12.p1k chr15 62 515 282164 282163 F 454 0.00 1415 reject_low 17 ALIGNMENT 872 Y12-7l12.q1k chr07 1006 35 848340 849317 C 972 97.22 1372 accept 0 ALIGNMENT 121 Y12-7l12.p1k chr15 211 480 354183 354449 F 270 83.70 1415 reject_low 20 ALIGNMENT 0 Y12-7l12.p1k chr06 513 62 181039 181038 C 452 0.00 1415 reject_low 16 ALIGNMENT 0 Y12-7l12.p1k chr15 481 812 354449 354448 F 332 0.00 1415 reject_low 20 ALIGNMENT 0 Y12-7l12.p1k chr16 466 499 856849 860358 F 34 0.00 1415 reject_low 18 ALIGNMENT 73 Y12-7l12.p1k chr16 516 592 572266 572342 F 77 98.70 1415 reject_low 15 ALIGNMENT 0 Y12-7l12.p1k chr02 466 812 198024 198023 F 347 0.00 1415 reject_low 2 ALIGNMENT 72 Y12-7l12.p1k chr03 595 515 142690 142769 C 81 97.53 1415 reject_low 12 ALIGNMENT 0 Y12-7l12.p1k chr15 514 62 226681 226680 C 453 0.00 1415 reject_low 13 ALIGNMENT 0 Y12-7l12.p1k chr01 466 812 182920 182919 F 347 0.00 1415 reject_low 7 ALIGNMENT 149 Y12-7l12.p1k chr01 147 465 182614 182920 F 319 85.27 1415 reject_low 7 ALIGNMENT 0 Y12-7l12.p1k chr02 62 146 197717 197716 F 85 0.00 1415 reject_low 2 ALIGNMENT 84 Y12-7l12.p1k chr16 500 586 860359 860445 F 87 98.85 1415 reject_low 18 ALIGNMENT 0 Y12-7l12.p1k chr04 812 466 1175159 1175158 C 347 0.00 1415 reject_low 9 ALIGNMENT 73 Y12-7l12.p1k chr06 586 514 180966 181038 C 73 100.00 1415 reject_low 16 ALIGNMENT 0 Y12-7l12.p1k chr16 62 515 572266 572265 F 454 0.00 1415 reject_low 15 ALIGNMENT 0 Y12-7l12.p1k chr02 513 62 197705 197704 C 452 0.00 1415 reject_low 11 ALIGNMENT 0 Y12-7l12.p1k chr06 62 510 162217 162216 F 449 0.00 1415 reject_low 14 ALIGNMENT 0 Y12-7l12.p1k chr15 812 595 226602 226601 C 218 0.00 1415 reject_low 13 ALIGNMENT 144 Y12-7l12.p1k chr16 160 465 856554 856848 F 306 85.29 1415 reject_low 18 ALIGNMENT 0 Y12-7l12.p1k chr16 587 812 860445 860444 F 226 0.00 1415 reject_low 18 ALIGNMENT 0 Y12-7l12.p1k chr14 466 812 726542 726541 F 347 0.00 1415 reject_low 8 ALIGNMENT 73 Y12-7l12.p1k chr15 594 515 226601 226680 C 80 97.50 1415 reject_low 13 ALIGNMENT 0 Y12-7l12.p1k chr16 593 812 572342 572341 F 220 0.00 1415 reject_low 15 ALIGNMENT 0 Y12-7l12.p1k chr02 812 596 197624 197623 C 217 0.00 1415 reject_low 11 ALIGNMENT 75 Y12-7l12.p1k chr02 595 514 197623 197704 C 82 97.56 1415 reject_low 11 ALIGNMENT 0 Y12-7l12.p1k chr08 144 62 146667 146666 C 83 0.00 1415 reject_low 3 ALIGNMENT 0 Y12-7l12.p1k chr04 315 62 1175308 1175307 C 254 0.00 1415 reject_low 9 ALIGNMENT 0 Y12-7l12.p1k chr15 340 812 226878 226877 F 473 0.00 1415 reject_low 19 ALIGNMENT 0 Y12-7l12.p1k chr04 146 62 946290 946289 C 85 0.00 1415 reject_low 4 ALIGNMENT 0 Y12-7l12.p1k chr06 587 812 162292 162291 F 226 0.00 1415 reject_low 14 ALIGNMENT 158 Y12-7l12.p1k chr04 463 147 945984 946289 C 317 86.12 1415 reject_low 4 ALIGNMENT 169 Y12-7l12.p1k chr16 147 465 880382 880689 F 319 87.15 1415 reject_low 1 ALIGNMENT 0 Y12-7l12.p1k chr16 466 812 880689 880688 F 347 0.00 1415 reject_low 1 ALIGNMENT 0 Y12-7l12.p1k chr04 812 464 945985 945984 C 349 0.00 1415 reject_low 4 ALIGNMENT 0 Y12-7l12.p1k chr01 62 146 182614 182613 F 85 0.00 1415 reject_low 7 ALIGNMENT 163 Y12-7l12.p1k chr02 147 465 197717 198024 F 319 86.52 1415 reject_low 2 ALIGNMENT 0 Y12-7l12.p1k chr14 62 145 546738 546737 F 84 0.00 1415 reject_low 6 ALIGNMENT 159 Y12-7l12.p1k chr08 465 145 146357 146666 C 321 85.98 1415 reject_low 3 ALIGNMENT 56 Y12-7l12.p1k chr15 211 339 226751 226878 F 129 82.95 1415 reject_low 19 ALIGNMENT 0 Y12-7l12.p1k chr08 812 466 146358 146357 C 347 0.00 1415 reject_low 3 ALIGNMENT 0 Y12-7l12.p1k chr15 206 210 354187 354182 F 5 0.00 1415 reject_low 20 ALIGNMENT 0 Y12-7l12.p1k chr03 812 596 142691 142690 C 217 0.00 1415 reject_low 12 ALIGNMENT 0 Y12-7l12.p1k chr15 62 146 354128 354127 F 85 0.00 1415 reject_low 20 ALIGNMENT 26 Y12-7l12.p1k chr15 147 205 354128 354186 F 59 84.75 1415 reject_low 20 ALIGNMENT 0 Y12-7l12.p1k chr12 62 145 373999 373998 F 84 0.00 1415 reject_low 5 ALIGNMENT 76 Y12-7l12.p1k chr06 511 586 162217 162292 F 76 100.00 1415 reject_low 14 ALIGNMENT 142 Y12-7l12.p1k chr14 147 465 726235 726542 F 319 84.33 1415 reject_low 8 ALIGNMENT 0 Y12-7l12.p1k chr14 62 146 726235 726234 F 85 0.00 1415 reject_low 8 ALIGNMENT 0 Y12-7l12.p1k chr16 62 159 856554 856553 F 98 0.00 1415 reject_low 18 ALIGNMENT 907 Y12-7l14.q1k chr07 1154 37 359838 360968 C 1118 95.08 1304 accept 0 ALIGNMENT 963 Y12-7l14.p1k chr07 27 1213 356200 357384 F 1187 95.37 1490 accept 0 ALIGNMENT 345 Y12-7l15.q1k chr14 144 516 561608 561980 F 373 98.93 1284 reject_low 9 ALIGNMENT 357 Y12-7l15.q1k chr10 142 514 197462 197834 F 373 100.00 1284 reject_low 6 ALIGNMENT 0 Y12-7l15.q1k chr09 143 62 197021 197020 C 82 0.00 1284 reject_low 8 ALIGNMENT 436 Y12-7l15.q1k chr08 40 514 91282 91757 F 475 98.95 1284 reject_low 3 ALIGNMENT 0 Y12-7l15.q1k chr14 62 142 96450 96449 F 81 0.00 1284 reject_low 19 ALIGNMENT 146 Y12-7l15.q1k chr14 143 302 96450 96609 F 160 98.12 1284 reject_low 19 ALIGNMENT 0 Y12-7l15.q1k chr08 515 811 85905 85904 F 297 0.00 1284 reject_low 10 ALIGNMENT 0 Y12-7l15.q1k chr14 517 811 561980 561979 F 295 0.00 1284 reject_low 9 ALIGNMENT 308 Y12-7l15.q1k chr07 518 144 931170 931543 C 375 95.73 1284 reject_low 17 ALIGNMENT 0 Y12-7l15.q1k chr16 143 62 443110 443109 C 82 0.00 1284 reject_low 11 ALIGNMENT 0 Y12-7l15.q1k chr05 143 62 354727 354726 C 82 0.00 1284 reject_low 14 ALIGNMENT 448 Y12-7l15.q1k chr10 40 514 203214 203689 F 475 99.79 1284 reject_low 2 ALIGNMENT 0 Y12-7l15.q1k chr11 62 514 313746 313745 F 453 0.00 1284 accept_chi 1 ALIGNMENT 346 Y12-7l15.q1k chr08 144 514 85535 85905 F 371 99.19 1284 reject_low 10 ALIGNMENT 0 Y12-7l15.q1k chr14 303 811 96609 96608 F 509 0.00 1284 reject_low 19 ALIGNMENT 355 Y12-7l15.q1k chr13 144 518 503770 504144 F 375 99.73 1284 reject_low 5 ALIGNMENT 0 Y12-7l15.q1k chr16 811 515 436888 436887 C 297 0.00 1284 reject_low 4 ALIGNMENT 0 Y12-7l15.q1k chr08 515 811 91757 91756 F 297 0.00 1284 reject_low 3 ALIGNMENT 0 Y12-7l15.q1k chr10 515 811 197834 197833 F 297 0.00 1284 reject_low 6 ALIGNMENT 0 Y12-7l15.q1k chr02 143 62 36219 36218 C 82 0.00 1284 reject_low 7 ALIGNMENT 436 Y12-7l15.q1k chr16 514 40 436887 437362 C 475 98.95 1284 reject_low 4 ALIGNMENT 0 Y12-7l15.q1k chr13 811 515 808537 808536 C 297 0.00 1284 reject_low 16 ALIGNMENT 390 Y12-7l15.q1k chr11 605 1122 314170 314696 F 518 93.05 1284|3,0 accept_chi 1 ALIGNMENT 0 Y12-7l15.q1k chr04 62 142 437145 437144 F 81 0.00 1284 reject_low 18 ALIGNMENT 312 Y12-7l15.q1k chr04 143 514 437145 437515 F 372 96.24 1284 reject_low 18 ALIGNMENT 0 Y12-7l15.q1k chr15 433 432 704062 710027 F 0 0.00 1284 reject_low 20 ALIGNMENT 0 Y12-7l15.q1k chr16 811 515 442740 442739 C 297 0.00 1284 reject_low 11 ALIGNMENT 70 Y12-7l15.q1k chr11 515 610 313746 313838 F 96 94.79 1284|0,3 accept_chi 1 ALIGNMENT 0 Y12-7l15.q1k chr05 811 518 354354 354353 C 294 0.00 1284 reject_low 14 ALIGNMENT 0 Y12-7l15.q1k chr07 62 142 110858 110857 F 81 0.00 1284 reject_low 12 ALIGNMENT 0 Y12-7l15.q1k chr15 517 811 710110 710109 F 295 0.00 1284 reject_low 20 ALIGNMENT 336 Y12-7l15.q1k chr14 516 144 632119 632491 C 373 98.12 1284 reject_low 13 ALIGNMENT 924 Y12-7l15.p1k chr05 24 1107 508023 509122 F 1084 96.77 1416 accept_chi 0 ALIGNMENT 0 Y12-7l15.q1k chr10 515 811 203689 203688 F 297 0.00 1284 reject_low 2 ALIGNMENT 0 Y12-7l15.q1k chr07 143 62 931544 931543 C 82 0.00 1284 reject_low 17 ALIGNMENT 0 Y12-7l15.q1k chr07 515 811 111229 111228 F 297 0.00 1284 reject_low 12 ALIGNMENT 0 Y12-7l15.q1k chr15 62 143 703773 703772 F 82 0.00 1284 reject_low 20 ALIGNMENT 0 Y12-7l15.q1k chr13 62 143 503770 503769 F 82 0.00 1284 reject_low 5 ALIGNMENT 343 Y12-7l15.q1k chr16 514 144 442739 443109 C 371 98.92 1284 reject_low 11 ALIGNMENT 0 Y12-7l15.q1k chr02 811 517 35847 35846 C 295 0.00 1284 reject_low 7 ALIGNMENT 0 Y12-7l15.q1k chr13 142 62 808907 808906 C 81 0.00 1284 reject_low 16 ALIGNMENT 0 Y12-7l15.q1k chr11 608 607 313836 314172 F 0 0.00 1284 accept_chi 1 ALIGNMENT 357 Y12-7l15.q1k chr02 516 144 35846 36218 C 373 100.00 1284 reject_low 7 ALIGNMENT 333 Y12-7l15.q1k chr05 517 144 354353 354726 C 374 97.86 1284 reject_low 14 ALIGNMENT 327 Y12-7l15.q1k chr13 514 143 808536 808906 C 372 97.58 1284 reject_low 16 ALIGNMENT 265 Y12-7l15.q1k chr15 144 434 703773 704063 F 291 98.28 1284|0,2 reject_low 20 ALIGNMENT 0 Y12-7l15.q1k chr08 62 143 85535 85534 F 82 0.00 1284 reject_low 10 ALIGNMENT 0 Y12-7l15.q1k chr02 142 62 643855 643854 C 81 0.00 1284 reject_low 15 ALIGNMENT 0 Y12-7l15.q1k chr07 811 519 931171 931170 C 293 0.00 1284 reject_low 17 ALIGNMENT 0 Y12-7l15.q1k chr02 811 515 643484 643483 C 297 0.00 1284 reject_low 15 ALIGNMENT 337 Y12-7l15.q1k chr02 514 143 643483 643854 C 372 98.39 1284 reject_low 15 ALIGNMENT 0 Y12-7l15.q1k chr14 143 62 632492 632491 C 82 0.00 1284 reject_low 13 ALIGNMENT 0 Y12-7l15.q1k chr04 515 811 437515 437514 F 297 0.00 1284 reject_low 18 ALIGNMENT 0 Y12-7l15.q1k chr09 811 515 196651 196650 C 297 0.00 1284 reject_low 8 ALIGNMENT 0 Y12-7l15.q1k chr14 811 517 632120 632119 C 295 0.00 1284 reject_low 13 ALIGNMENT 60 Y12-7l15.q1k chr15 430 516 710025 710110 F 87 94.25 1284|3,0 reject_low 20 ALIGNMENT 0 Y12-7l15.q1k chr14 62 143 561608 561607 F 82 0.00 1284 reject_low 9 ALIGNMENT 0 Y12-7l15.q1k chr13 519 811 504144 504143 F 293 0.00 1284 reject_low 5 ALIGNMENT 340 Y12-7l15.q1k chr07 143 514 110858 111229 F 372 98.66 1284 reject_low 12 ALIGNMENT 0 Y12-7l15.q1k chr10 62 141 197462 197461 F 80 0.00 1284 reject_low 6 ALIGNMENT 355 Y12-7l15.q1k chr09 514 144 196650 197020 C 371 100.00 1284 reject_low 8 ALIGNMENT 912 Y12-7l16.q1k chr01 1100 38 88798 89870 C 1063 97.08 1287 accept 0 ALIGNMENT 879 Y12-7l16.p1k chr01 18 1056 83973 85013 F 1039 95.67 1397 accept 0 ALIGNMENT 957 Y12-7l17.q1k chr10 1195 38 653188 654350 C 1158 95.16 1295 accept 0 ALIGNMENT 963 Y12-7l17.p1k chr10 18 1237 649677 650899 F 1220 94.26 1510 accept 0 ALIGNMENT 0 Y12-7l18.q1k chr12 710 819 468930 468929 F 110 0.00 1268 reject_low 2 ALIGNMENT 645 Y12-7l18.q1k chr12 31 709 468250 468930 F 679 99.56 1268 reject_low 2 ALIGNMENT 119 Y12-7l18.q1k chr12 591 709 485696 485814 F 119 100.00 1268 reject_low 7 ALIGNMENT 119 Y12-7l18.q1k chr12 591 709 482044 482162 F 119 100.00 1268 reject_low 6 ALIGNMENT 0 Y12-7l18.q1k chr12 62 590 482044 482043 F 529 0.00 1268 reject_low 6 ALIGNMENT 0 Y12-7l18.q1k chr12 710 819 482162 482161 F 110 0.00 1268 reject_low 6 ALIGNMENT 0 Y12-7l18.q1k chr06 819 332 31623 31622 C 488 0.00 1268 reject_low 4 ALIGNMENT 0 Y12-7l18.q1k chr12 710 819 472582 472581 F 110 0.00 1268 reject_low 5 ALIGNMENT 0 Y12-7l18.q1k chr12 725 819 489481 489480 F 95 0.00 1268 reject_low 3 ALIGNMENT 128 Y12-7l18.q1k chr12 591 724 489348 489481 F 134 98.51 1268 reject_low 3 ALIGNMENT 94 Y12-7l18.q1k chr06 331 224 31622 31729 C 108 98.15 1268 reject_low 4 ALIGNMENT 976 Y12-7l18.p1k chr12 1231 18 464262 465478 C 1214 94.65 1428 accept 0 ALIGNMENT 119 Y12-7l18.q1k chr12 591 709 472464 472582 F 119 100.00 1268 reject_low 5 ALIGNMENT 0 Y12-7l18.q1k chr12 710 819 485814 485813 F 110 0.00 1268 reject_low 7 ALIGNMENT 0 Y12-7l18.q1k chr12 62 590 472464 472463 F 529 0.00 1268 reject_low 5 ALIGNMENT 0 Y12-7l18.q1k chr12 62 590 489348 489347 F 529 0.00 1268 reject_low 3 ALIGNMENT 0 Y12-7l18.q1k chr12 62 590 485696 485695 F 529 0.00 1268 reject_low 7 ALIGNMENT 836 Y12-7l18.q1k chr12 31 1041 459113 460147 F 1011 95.94 1268 accept 0 ALIGNMENT 0 Y12-7l18.q1k chr06 223 62 31730 31729 C 162 0.00 1268 reject_low 4 ALIGNMENT 976 Y12-7l18.p1k chr12 1151 18 455213 456341 C 1134 96.30 1428 reject_low 1 ALIGNMENT 988 Y12-7l19.q1k chr13 1177 40 782874 784020 C 1138 96.49 1307 accept 0 ALIGNMENT 987 Y12-7l19.p1k chr13 18 1184 779629 780809 F 1167 96.49 1425 accept 0 ALIGNMENT 965 Y12-7l21.q1k chr02 44 1171 378439 379579 F 1128 96.45 1258 accept 0 ALIGNMENT 953 Y12-7l21.p1k chr02 1162 30 382353 383488 C 1133 96.12 1377 accept 0 ALIGNMENT 981 Y12-7l22.p1k chr15 1167 26 887593 888746 C 1142 96.67 1362 accept 0 ALIGNMENT 1005 Y12-7l22.q1k chr15 38 1221 882601 883791 F 1184 95.52 1261 accept 0 ALIGNMENT 1010 Y12-7l23.p1k chr04 1266 26 192910 194165 C 1241 95.33 1380 accept 0 ALIGNMENT 892 Y12-7l23.q1k chr04 44 1140 190093 191204 F 1097 95.26 1225 accept 0 ALIGNMENT 890 Y12-7m03.q1k chr13 1119 26 523506 524597 C 1094 95.98 1430 accept 0 ALIGNMENT 431 Y12-7m03.p1k chr13 107 865 519750 520495 F 759 87.88 1478 accept 0 ALIGNMENT 672 Y12-7m04.q1k chr14 906 36 26763 27630 C 871 94.14 1437 accept 0 ALIGNMENT 517 Y12-7m05.q1k chr04 36 800 1399552 1400320 F 765 90.46 1337 accept 1 ALIGNMENT 522 Y12-7m05.p1k chr05 54 756 10072 10772 F 703 92.89 1531 ambiguous_tel 0 ALIGNMENT 893 Y12-7m06.p1k chr04 15 1187 1139079 1140254 F 1173 93.61 1445 accept 0 ALIGNMENT 938 Y12-7m06.q1k chr04 1142 39 1143772 1144884 C 1104 96.29 1350 accept 0 ALIGNMENT 952 Y12-7m08.q1k chr09 33 1137 423395 424504 F 1105 96.20 1355 accept 0 ALIGNMENT 828 Y12-7m08.p1k chr09 1153 23 427751 428907 C 1131 92.40 1444 accept 0 ALIGNMENT 954 Y12-7m10.q1k chr07 39 1109 589906 590980 F 1071 97.29 1331 accept 0 ALIGNMENT 915 Y12-7m10.p1k chr07 1085 19 595413 596474 C 1067 97.09 1545 accept 0 ALIGNMENT 55 Y12-7m11.q1k chr07 410 524 1088992 1089106 F 115 85.22 1390 reject_low 316 ALIGNMENT 0 Y12-7m11.q1k chr12 190 798 1076678 1076677 F 609 0.00 1390 reject_low 309 ALIGNMENT 0 Y12-7m11.q1k chr15 62 99 1089229 1089228 F 38 0.00 1390 reject_low 22 ALIGNMENT 223 Y12-7m11.q1k chr12 524 136 1827 2215 C 389 87.40 1390|0,9 reject_low 398 ALIGNMENT 185 Y12-7m11.q1k chr16 172 513 945962 946303 F 342 86.26 1390 reject_low 116 ALIGNMENT 218 Y12-7m11.q1k chr02 488 42 1486 1932 C 447 84.34 1390 reject_low 91 ALIGNMENT 0 Y12-7m11.q1k chr15 190 798 1089642 1089641 F 609 0.00 1390 reject_low 312 ALIGNMENT 72 Y12-7m11.q1k chr15 63 225 1089480 1089642 F 163 82.21 1390 reject_low 269 ALIGNMENT 0 Y12-7m11.q1k chr12 514 798 1076462 1076461 F 285 0.00 1390 reject_low 402 ALIGNMENT 0 Y12-7m11.q1k chr12 417 798 1076689 1076688 F 382 0.00 1390 reject_low 61 ALIGNMENT 0 Y12-7m11.q1k chr16 798 154 1495 1494 C 645 0.00 1390 reject_low 333 ALIGNMENT 0 Y12-7m11.q1k chr16 268 62 1883 1882 C 207 0.00 1390 reject_low 225 ALIGNMENT 33 Y12-7m11.q1k chr16 525 460 1842 1907 C 66 84.85 1390 reject_low 378 ALIGNMENT 43 Y12-7m11.q1k chr16 446 513 945984 946051 F 68 89.71 1390 reject_low 365 ALIGNMENT 0 Y12-7m11.q1k chr05 525 798 575029 575028 F 274 0.00 1390 reject_low 315 ALIGNMENT 0 Y12-7m11.q1k chr12 798 526 7686 7685 C 273 0.00 1390 reject_low 373 ALIGNMENT 148 Y12-7m11.q1k chr05 524 120 1650 2054 C 405 80.49 1390 reject_low 150 ALIGNMENT 0 Y12-7m11.q1k chr16 315 62 1908 1907 C 254 0.00 1390 reject_low 253 ALIGNMENT 102 Y12-7m11.q1k chr07 280 524 1088970 1089214 F 245 82.86 1390 reject_low 212 ALIGNMENT 0 Y12-7m11.q1k chr09 798 453 1687 1686 C 346 0.00 1390 reject_low 48 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1076401 1076400 F 274 0.00 1390 reject_low 394,405 ALIGNMENT 0 Y12-7m11.q1k chr05 119 62 2055 2054 C 58 0.00 1390 reject_low 150 ALIGNMENT 681 Y12-7m11.q1k chr13 1111 100 1078 2091 C 1012 90.02 1390 reject_low 21 ALIGNMENT 0 Y12-7m11.q1k chr12 526 798 1069775 1069774 F 273 0.00 1390 reject_low 298 ALIGNMENT 94 Y12-7m11.q1k chr12 44 277 1069798 1070031 F 234 80.77 1390|0,4 reject_low 408,409 ALIGNMENT 0 Y12-7m11.q1k chr08 409 62 1910 1909 C 348 0.00 1390 reject_low 366 ALIGNMENT 41 Y12-7m11.q1k chr15 59 128 1089584 1089653 F 70 87.14 1390 reject_low 351 ALIGNMENT 0 Y12-7m11.q1k chr05 526 798 575066 575065 F 273 0.00 1390 reject_low 289 ALIGNMENT 0 Y12-7m11.q1k chr12 62 171 1069602 1069601 F 110 0.00 1390 reject_low 134 ALIGNMENT 146 Y12-7m11.q1k chr12 344 63 1683 1964 C 282 85.11 1390 reject_low 149 ALIGNMENT 0 Y12-7m11.q1k chr12 445 62 7729 7728 C 384 0.00 1390 reject_low 359 ALIGNMENT 149 Y12-7m11.q1k chr09 344 48 1686 1982 C 297 84.51 1390 reject_low 143 ALIGNMENT 0 Y12-7m11.q1k chr02 429 62 2157 2156 C 368 0.00 1390 reject_low 368 ALIGNMENT 0 Y12-7m11.q1k chr13 279 62 2092 2091 C 218 0.00 1390 reject_low 214 ALIGNMENT 0 Y12-7m11.q1k chr15 129 798 1089653 1089652 F 670 0.00 1390 reject_low 351 ALIGNMENT 0 Y12-7m11.q1k chr10 196 62 2321 2320 C 135 0.00 1390 reject_low 196 ALIGNMENT 58 Y12-7m11.q1k chr09 524 410 2118 2232 C 115 86.09 1390 reject_low 419 ALIGNMENT 0 Y12-7m11.q1k chr16 62 445 945984 945983 F 384 0.00 1390 reject_low 365 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 2030 2029 C 274 0.00 1390 reject_low 208 ALIGNMENT 55 Y12-7m11.q1k chr16 410 524 945984 946098 F 115 85.22 1390 reject_low 321 ALIGNMENT 743 Y12-7m11.q1k chr05 1096 42 895 1952 C 1055 91.00 1390 reject_low 18 ALIGNMENT 43 Y12-7m11.q1k chr12 446 513 1069624 1069691 F 68 89.71 1390 reject_low 360 ALIGNMENT 0 Y12-7m11.q1k chr09 409 230 2233 2244 C 180 0.00 1390 reject_low 419 ALIGNMENT 209 Y12-7m11.q1k chr02 416 44 1486 1858 C 373 86.60 1390 reject_low 97 ALIGNMENT 104 Y12-7m11.q1k chr05 308 63 1470 1715 C 246 81.71 1390 reject_low 198 ALIGNMENT 0 Y12-7m11.q1k chr08 314 62 1933 1932 C 253 0.00 1390 reject_low 273 ALIGNMENT 109 Y12-7m11.q1k chr09 513 278 2021 2256 C 236 84.32 1390 reject_low 418 ALIGNMENT 0 Y12-7m11.q1k chr09 798 417 1687 1686 C 382 0.00 1390 reject_low 73 ALIGNMENT 0 Y12-7m11.q1k chr14 459 62 1999 1998 C 398 0.00 1390 reject_low 376 ALIGNMENT 0 Y12-7m11.q1k chr04 62 459 1530064 1530063 F 398 0.00 1390 reject_low 370 ALIGNMENT 0 Y12-7m11.q1k chr16 381 798 946494 946493 F 418 0.00 1390 reject_low 105 ALIGNMENT 0 Y12-7m11.q1k chr15 62 351 1089229 1089228 F 290 0.00 1390 reject_low 299 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1687 1686 C 274 0.00 1390 reject_low 159 ALIGNMENT 0 Y12-7m11.q1k chr10 798 190 1681 1680 C 609 0.00 1390 reject_low 275 ALIGNMENT 77 Y12-7m11.q1k chr02 308 63 1486 1731 C 246 78.05 1390 reject_low 261 ALIGNMENT 90 Y12-7m11.q1k chr07 316 513 1088970 1089167 F 198 83.84 1390 reject_low 249 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1069846 1069845 F 274 0.00 1390 reject_low 229 ALIGNMENT 63 Y12-7m11.q1k chr05 225 63 1481 1643 C 163 80.37 1390 reject_low 285 ALIGNMENT 0 Y12-7m11.q1k chr15 62 268 1089254 1089253 F 207 0.00 1390 reject_low 235 ALIGNMENT 0 Y12-7m11.q1k chr16 525 798 946278 946277 F 274 0.00 1390 reject_low 177 ALIGNMENT 137 Y12-7m11.q1k chr02 344 63 1486 1767 C 282 84.04 1390 reject_low 160 ALIGNMENT 0 Y12-7m11.q1k chr06 79 62 1266 1265 C 18 0.00 1390 reject_low 279 ALIGNMENT 0 Y12-7m11.q1k chr05 309 798 575317 575316 F 490 0.00 1390 reject_low 152 ALIGNMENT 777 Y12-7m11.p1k chr10 14 1085 4870 5962 F 1072 92.54 1549 reject_low 1 ALIGNMENT 163 Y12-7m11.q1k chr05 380 44 1470 1806 C 337 83.98 1390 reject_low 120 ALIGNMENT 32 Y12-7m11.q1k chr09 525 470 2189 2244 C 56 87.50 1390 reject_low 421 ALIGNMENT 0 Y12-7m11.q1k chr05 371 62 2055 2054 C 310 0.00 1390 reject_low 388 ALIGNMENT 55 Y12-7m11.q1k chr14 524 410 1862 1976 C 115 85.22 1390 reject_low 319 ALIGNMENT 0 Y12-7m11.q1k chr06 299 62 1262 1261 C 238 0.00 1390 reject_low 355 ALIGNMENT 0 Y12-7m11.p1k chr06 62 474 3050 3049 F 413 0.00 1549 reject_low 28 ALIGNMENT 49 Y12-7m11.q1k chr15 63 153 1089552 1089642 F 91 85.71 1390 reject_low 332 ALIGNMENT 0 Y12-7m11.q1k chr12 279 278 2216 7320 C 2 0.00 1390 reject_low 406 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1507 1506 C 274 0.00 1390 reject_low 41 ALIGNMENT 237 Y12-7m11.q1k chr09 524 42 1758 2240 C 483 84.47 1390 reject_low 57 ALIGNMENT 0 Y12-7m11.q1k chr10 798 530 1881 1880 C 269 0.00 1390 reject_low 101 ALIGNMENT 0 Y12-7m11.q1k chr16 459 62 1908 1907 C 398 0.00 1390 reject_low 378 ALIGNMENT 55 Y12-7m11.q1k chr12 524 410 7614 7728 C 115 85.22 1390 reject_low 317 ALIGNMENT 0 Y12-7m11.q1k chr16 62 99 945962 945961 F 38 0.00 1390 reject_low 96 ALIGNMENT 102 Y12-7m11.q1k chr13 524 280 1847 2091 C 245 82.86 1390 reject_low 214 ALIGNMENT 0 Y12-7m11.q1k chr15 62 459 1089229 1089228 F 398 0.00 1390 reject_low 377 ALIGNMENT 55 Y12-7m11.q1k chr10 524 301 2101 2324 C 224 77.23 1390 reject_low 338 ALIGNMENT 0 Y12-7m11.q1k chr15 417 798 1089653 1089652 F 382 0.00 1390 reject_low 62 ALIGNMENT 684 Y12-7m11.q1k chr05 100 1111 574893 575906 F 1012 90.12 1390 reject_low 19 ALIGNMENT 115 Y12-7m11.q1k chr12 277 59 1678 1896 C 219 84.93 1390 reject_low 179 ALIGNMENT 0 Y12-7m11.q1k chr15 525 798 1089581 1089580 F 274 0.00 1390 reject_low 135 ALIGNMENT 32 Y12-7m11.q1k chr08 525 470 1866 1921 C 56 87.50 1390 reject_low 381 ALIGNMENT 69 Y12-7m11.q1k chr09 225 63 1697 1859 C 163 81.60 1390 reject_low 277 ALIGNMENT 0 Y12-7m11.q1k chr04 62 409 1530086 1530085 F 348 0.00 1390 reject_low 334 ALIGNMENT 0 Y12-7m11.q1k chr08 278 62 1933 1932 C 217 0.00 1390 reject_low 236 ALIGNMENT 122 Y12-7m11.q1k chr14 344 48 1574 1870 C 297 81.48 1390 reject_low 172 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 1831 1830 C 274 0.00 1390 reject_low 90 ALIGNMENT 99 Y12-7m11.q1k chr04 280 524 1530064 1530308 F 245 82.45 1390 reject_low 228 ALIGNMENT 326 Y12-7m11.p1k chr06 475 1085 3050 3678 F 611 87.07 1549 reject_low 28 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 2027 2026 C 274 0.00 1390 reject_low 288 ALIGNMENT 69 Y12-7m11.q1k chr10 225 63 1680 1842 C 163 81.60 1390 reject_low 278 ALIGNMENT 0 Y12-7m11.q1k chr15 62 171 1089229 1089228 F 110 0.00 1390 reject_low 135 ALIGNMENT 676 Y12-7m11.q1k chr14 1106 100 990 1998 C 1007 89.97 1390 reject_low 24 ALIGNMENT 0 Y12-7m11.q1k chr12 315 309 2216 7325 C 7 0.00 1390 reject_low 400 ALIGNMENT 0 Y12-7m11.q1k chr10 798 514 2005 2004 C 285 0.00 1390 reject_low 196 ALIGNMENT 0 Y12-7m11.q1k chr05 62 351 574893 574892 F 290 0.00 1390 reject_low 289 ALIGNMENT 0 Y12-7m11.q1k chr07 278 798 1089399 1089398 F 521 0.00 1390 reject_low 201 ALIGNMENT 0 Y12-7m11.q1k chr14 798 522 1686 1685 C 277 0.00 1390 reject_low 190 ALIGNMENT 157 Y12-7m11.q1k chr12 44 380 1069690 1070026 F 337 83.38 1390 reject_low 405 ALIGNMENT 125 Y12-7m11.q1k chr16 208 524 945962 946278 F 317 81.70 1390 reject_low 177 ALIGNMENT 94 Y12-7m11.q1k chr14 277 44 1569 1802 C 234 80.77 1390 reject_low 205 ALIGNMENT 348 Y12-7m11.q1k chr02 524 42 1522 2004 C 483 92.13 1390 reject_low 37 ALIGNMENT 43 Y12-7m11.q1k chr12 513 446 7661 7728 C 68 89.71 1390 reject_low 359 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 1523 1522 C 274 0.00 1390 reject_low 37 ALIGNMENT 0 Y12-7m11.q1k chr05 129 798 575317 575316 F 670 0.00 1390 reject_low 345 ALIGNMENT 0 Y12-7m11.q1k chr02 321 62 2157 2156 C 260 0.00 1390 reject_low 238 ALIGNMENT 180 Y12-7m11.q1k chr02 452 44 1486 1894 C 409 82.64 1390 reject_low 113 ALIGNMENT 744 Y12-7m11.p1k chr04 1079 14 1526478 1527563 C 1066 91.65 1549 reject_low 5 ALIGNMENT 0 Y12-7m11.q1k chr08 62 171 560417 560416 F 110 0.00 1390 reject_low 110 ALIGNMENT 0 Y12-7m11.q1k chr08 798 525 1760 1759 C 274 0.00 1390 reject_low 322 ALIGNMENT 725 Y12-7m11.p1k chr07 1085 30 1085378 1086450 C 1056 91.19 1549 reject_low 7 ALIGNMENT 0 Y12-7m11.q1k chr02 798 526 1882 1881 C 273 0.00 1390 reject_low 184 ALIGNMENT 86 Y12-7m11.q1k chr16 63 308 946249 946494 F 246 79.27 1390 reject_low 245 ALIGNMENT 202 Y12-7m11.q1k chr10 529 89 1880 2320 C 441 83.45 1390 reject_low 101 ALIGNMENT 87 Y12-7m11.q1k chr15 316 513 1089229 1089426 F 198 83.33 1390 reject_low 258 ALIGNMENT 90 Y12-7m11.q1k chr05 316 513 574893 575090 F 198 83.84 1390 reject_low 248 ALIGNMENT 0 Y12-7m11.q1k chr06 798 417 894 893 C 382 0.00 1390 reject_low 40 ALIGNMENT 0 Y12-7m11.q1k chr14 351 62 1999 1998 C 290 0.00 1390 reject_low 293 ALIGNMENT 114 Y12-7m11.q1k chr02 277 63 1481 1695 C 215 85.12 1390 reject_low 182 ALIGNMENT 0 Y12-7m11.q1k chr08 525 798 560589 560588 F 274 0.00 1390 reject_low 296 ALIGNMENT 43 Y12-7m11.q1k chr16 513 446 1818 1885 C 68 89.71 1390 reject_low 364 ALIGNMENT 0 Y12-7m11.q1k chr12 62 135 1069602 1069601 F 74 0.00 1390 reject_low 86 ALIGNMENT 101 Y12-7m11.q1k chr12 521 269 1938 2190 C 253 82.21 1390|0,5 reject_low 407 ALIGNMENT 0 Y12-7m11.q1k chr14 798 129 1575 1574 C 670 0.00 1390 reject_low 350 ALIGNMENT 0 Y12-7m11.p1k chr08 472 62 558620 558619 C 411 0.00 1549 reject_low 35 ALIGNMENT 165 Y12-7m11.q1k chr06 237 44 892 1085 C 194 95.88 1390 reject_low 112 ALIGNMENT 0 Y12-7m11.q1k chr08 453 798 560841 560840 F 346 0.00 1390 reject_low 95 ALIGNMENT 0 Y12-7m11.q1k chr16 798 525 1520 1519 C 274 0.00 1390 reject_low 84 ALIGNMENT 0 Y12-7m11.q1k chr09 139 62 2299 2298 C 78 0.00 1390 reject_low 401,416,417,418,419,420,421 ALIGNMENT 0 Y12-7m11.q1k chr02 798 226 1498 1497 C 573 0.00 1390 reject_low 239 ALIGNMENT 0 Y12-7m11.q1k chr07 154 798 1089383 1089382 F 645 0.00 1390 reject_low 326 ALIGNMENT 0 Y12-7m11.q1k chr08 62 207 560417 560416 F 146 0.00 1390 reject_low 166 ALIGNMENT 56 Y12-7m11.q1k chr09 153 48 1697 1802 C 106 84.91 1390 reject_low 283 ALIGNMENT 242 Y12-7m11.q1k chr12 44 416 1076317 1076689 F 373 89.54 1390 reject_low 61 ALIGNMENT 101 Y12-7m11.q1k chr07 269 521 1088995 1089247 F 253 82.21 1390 reject_low 221 ALIGNMENT 0 Y12-7m11.q1k chr13 798 417 1668 1667 C 382 0.00 1390 reject_low 53 ALIGNMENT 55 Y12-7m11.q1k chr15 63 189 1089516 1089642 F 127 81.89 1390 reject_low 312 ALIGNMENT 564 Y12-7m11.q1k chr08 1096 269 1076 1906 C 828 90.34 1390 reject_low 27 ALIGNMENT 0 Y12-7m11.q1k chr10 336 62 2325 2324 C 275 0.00 1390 reject_low 385 ALIGNMENT 0 Y12-7m11.q1k chr08 798 514 1807 1806 C 285 0.00 1390 reject_low 366 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 1742 1741 C 274 0.00 1390 reject_low 58 ALIGNMENT 0 Y12-7m11.q1k chr16 129 798 946494 946493 F 670 0.00 1390 reject_low 342 ALIGNMENT 0 Y12-7m11.q1k chr12 62 315 1069602 1069601 F 254 0.00 1390 reject_low 257 ALIGNMENT 182 Y12-7m11.q1k chr12 513 172 1874 2215 C 342 85.96 1390|0,9 reject_low 399 ALIGNMENT 196 Y12-7m11.q1k chr16 44 380 946158 946494 F 337 87.24 1390 reject_low 105 ALIGNMENT 0 Y12-7m11.q1k chr06 278 62 1247 1246 C 217 0.00 1390 reject_low 300 ALIGNMENT 0 Y12-7m11.q1k chr10 798 381 1670 1669 C 418 0.00 1390 reject_low 139 ALIGNMENT 0 Y12-7m11.q1k chr02 798 522 1706 1705 C 277 0.00 1390 reject_low 102 ALIGNMENT 265 Y12-7m11.q1k chr08 136 524 560417 560805 F 389 91.00 1390 reject_low 50 ALIGNMENT 157 Y12-7m11.q1k chr10 380 44 1669 2005 C 337 83.38 1390 reject_low 139 ALIGNMENT 0 Y12-7m11.q1k chr14 409 62 1977 1976 C 348 0.00 1390 reject_low 319 ALIGNMENT 132 Y12-7m11.q1k chr12 44 308 1076425 1076689 F 265 84.15 1390 reject_low 154 ALIGNMENT 0 Y12-7m11.q1k chr05 453 798 575317 575316 F 346 0.00 1390 reject_low 63 ALIGNMENT 49 Y12-7m11.q1k chr08 153 63 1662 1752 C 91 85.71 1390 reject_low 327 ALIGNMENT 20 Y12-7m11.q1k chr12 81 59 1694 1716 C 23 95.65 1390 reject_low 391 ALIGNMENT 0 Y12-7m11.q1k chr08 798 453 1652 1651 C 346 0.00 1390 reject_low 178 ALIGNMENT 0 Y12-7m11.q1k chr04 62 445 1530086 1530085 F 384 0.00 1390 reject_low 356 ALIGNMENT 0 Y12-7m11.q1k chr12 129 798 1076689 1076688 F 670 0.00 1390 reject_low 348 ALIGNMENT 63 Y12-7m11.q1k chr08 352 524 560417 560589 F 173 80.92 1390 reject_low 296 ALIGNMENT 0 Y12-7m11.q1k chr06 223 62 1266 1265 C 162 0.00 1390 reject_low 286 ALIGNMENT 0 Y12-7m11.q1k chr08 798 190 1663 1662 C 609 0.00 1390 reject_low 244 ALIGNMENT 70 Y12-7m11.q1k chr06 513 224 976 1265 C 290 76.55 1390 reject_low 286 ALIGNMENT 232 Y12-7m11.q1k chr16 452 42 1483 1893 C 411 86.86 1390 reject_low 67 ALIGNMENT 0 Y12-7m11.q1k chr06 798 238 893 892 C 561 0.00 1390 reject_low 112 ALIGNMENT 197 Y12-7m11.q1k chr08 172 524 560417 560769 F 353 86.97 1390 reject_low 110 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1615 1614 C 274 0.00 1390 reject_low 104 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 1814 1813 C 274 0.00 1390 reject_low 59 ALIGNMENT 237 Y12-7m11.q1k chr10 524 42 1813 2295 C 483 84.47 1390 reject_low 59 ALIGNMENT 0 Y12-7m11.q1k chr12 381 409 1070027 1076286 F 29 0.00 1390 reject_low 405 ALIGNMENT 101 Y12-7m11.q1k chr12 521 269 7473 7725 C 253 82.21 1390 reject_low 222 ALIGNMENT 37 Y12-7m11.q1k chr08 446 513 560439 560506 F 68 86.76 1390 reject_low 369 ALIGNMENT 79 Y12-7m11.q1k chr12 225 44 1694 1875 C 182 81.87 1390 reject_low 241 ALIGNMENT 0 Y12-7m11.q1k chr16 798 381 1484 1483 C 418 0.00 1390 reject_low 131 ALIGNMENT 0 Y12-7m11.q1k chr07 525 798 1089106 1089105 F 274 0.00 1390 reject_low 316 ALIGNMENT 0 Y12-7m11.q1k chr15 526 798 1089294 1089293 F 273 0.00 1390 reject_low 377 ALIGNMENT 0 Y12-7m11.q1k chr12 798 522 1939 1938 C 277 0.00 1390 reject_low 407 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 1759 1758 C 274 0.00 1390 reject_low 57 ALIGNMENT 90 Y12-7m11.q1k chr12 513 316 2018 2215 C 198 83.84 1390 reject_low 400 ALIGNMENT 0 Y12-7m11.q1k chr09 798 309 1687 1686 C 490 0.00 1390 reject_low 180 ALIGNMENT 76 Y12-7m11.q1k chr08 524 315 1723 1932 C 210 80.95 1390 reject_low 273 ALIGNMENT 0 Y12-7m11.q1k chr07 62 445 1088992 1088991 F 384 0.00 1390 reject_low 358 ALIGNMENT 0 Y12-7m11.q1k chr10 798 309 1670 1669 C 490 0.00 1390 reject_low 181 ALIGNMENT 0 Y12-7m11.q1k chr15 62 135 1089229 1089228 F 74 0.00 1390 reject_low 87 ALIGNMENT 120 Y12-7m11.q1k chr07 208 521 1088970 1089283 F 314 81.21 1390 reject_low 187 ALIGNMENT 0 Y12-7m11.q1k chr16 526 798 946135 946134 F 273 0.00 1390 reject_low 295 ALIGNMENT 219 Y12-7m11.q1k chr12 524 100 1791 2215 C 425 85.41 1390 reject_low 98 ALIGNMENT 539 Y12-7m11.q1k chr06 1096 152 318 1265 C 945 86.56 1390 reject_low 29 ALIGNMENT 0 Y12-7m11.q1k chr05 798 514 1878 1877 C 285 0.00 1390 reject_low 354 ALIGNMENT 725 Y12-7m11.q1k chr09 1111 44 1097 2166 C 1068 90.17 1390 reject_low 16 ALIGNMENT 33 Y12-7m11.q1k chr13 525 460 2026 2091 C 66 84.85 1390 reject_low 375 ALIGNMENT 111 Y12-7m11.q1k chr10 308 44 1669 1933 C 265 81.51 1390 reject_low 181 ALIGNMENT 671 Y12-7m11.p1k chr05 1085 30 571318 572373 C 1056 90.06 1549 reject_low 10 ALIGNMENT 228 Y12-7m11.q1k chr09 524 42 1794 2276 C 483 83.85 1390 reject_low 71 ALIGNMENT 0 Y12-7m11.q1k chr13 798 154 1679 1678 C 645 0.00 1390 reject_low 330 ALIGNMENT 229 Y12-7m11.q1k chr12 42 452 1069616 1070026 F 411 86.62 1390|0,3 reject_low 397 ALIGNMENT 23 Y12-7m11.q1k chr09 193 140 2245 2298 C 54 81.48 1390|9,0 reject_low 401,416,417,418,419,420,421 ALIGNMENT 49 Y12-7m11.q1k chr04 63 153 1530387 1530477 F 91 85.71 1390 reject_low 324 ALIGNMENT 0 Y12-7m11.q1k chr14 798 525 1647 1646 C 274 0.00 1390 reject_low 125 ALIGNMENT 33 Y12-7m11.q1k chr07 460 525 1088970 1089035 F 66 84.85 1390 reject_low 372 ALIGNMENT 0 Y12-7m11.q1k chr14 798 514 1910 1909 C 285 0.00 1390 reject_low 362 ALIGNMENT 37 Y12-7m11.q1k chr10 513 337 2148 2324 C 177 75.71 1390 reject_low 385 ALIGNMENT 0 Y12-7m11.q1k chr08 525 798 560661 560660 F 274 0.00 1390 reject_low 195 ALIGNMENT 0 Y12-7m11.q1k chr12 207 62 7751 7750 C 146 0.00 1390 reject_low 188 ALIGNMENT 0 Y12-7m11.q1k chr10 798 278 1665 1664 C 521 0.00 1390 reject_low 247 ALIGNMENT 0 Y12-7m11.q1k chr10 798 489 1670 1669 C 310 0.00 1390 reject_low 39 ALIGNMENT 52 Y12-7m11.q1k chr12 410 524 1069624 1069738 F 115 84.35 1390 reject_low 335 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 2066 2065 C 274 0.00 1390 reject_low 280 ALIGNMENT 0 Y12-7m11.q1k chr07 522 798 1089247 1089246 F 277 0.00 1390 reject_low 221 ALIGNMENT 33 Y12-7m11.q1k chr15 460 525 1089229 1089294 F 66 84.85 1390 reject_low 377 ALIGNMENT 0 Y12-7m11.q1k chr09 121 62 2233 2232 C 60 0.00 1390 reject_low 90 ALIGNMENT 317 Y12-7m11.p1k chr12 473 1085 4011 4640 F 613 86.62 1549 reject_low 11 ALIGNMENT 0 Y12-7m11.q1k chr02 465 62 2157 2156 C 404 0.00 1390 reject_low 380 ALIGNMENT 64 Y12-7m11.q1k chr05 352 525 574893 575066 F 174 81.03 1390 reject_low 289 ALIGNMENT 0 Y12-7m11.q1k chr07 526 798 1089143 1089142 F 273 0.00 1390 reject_low 290 ALIGNMENT 94 Y12-7m11.q1k chr15 44 277 1089425 1089658 F 234 80.77 1390 reject_low 206 ALIGNMENT 0 Y12-7m11.q1k chr08 798 226 1663 1662 C 573 0.00 1390 reject_low 119 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 7615 7614 C 274 0.00 1390 reject_low 317 ALIGNMENT 0 Y12-7m11.q1k chr10 798 154 1681 1680 C 645 0.00 1390 reject_low 284 ALIGNMENT 0 Y12-7m11.q1k chr06 187 62 1266 1265 C 126 0.00 1390 reject_low 219 ALIGNMENT 0 Y12-7m11.q1k chr16 135 62 1908 1907 C 74 0.00 1390 reject_low 84 ALIGNMENT 49 Y12-7m11.q1k chr08 63 153 560740 560830 F 91 85.71 1390 reject_low 328 ALIGNMENT 55 Y12-7m11.q1k chr05 63 189 575180 575306 F 127 81.89 1390 reject_low 306 ALIGNMENT 101 Y12-7m11.q1k chr14 521 269 1721 1973 C 253 82.21 1390 reject_low 224 ALIGNMENT 233 Y12-7m11.q1k chr02 521 44 1597 2074 C 478 84.31 1390 reject_low 75 ALIGNMENT 0 Y12-7m11.q1k chr14 798 525 1611 1610 C 274 0.00 1390 reject_low 83 ALIGNMENT 43 Y12-7m11.q1k chr14 513 446 1909 1976 C 68 89.71 1390 reject_low 362 ALIGNMENT 0 Y12-7m11.p1k chr12 93 62 1067098 1067097 C 32 0.00 1549 reject_low 4 ALIGNMENT 0 Y12-7m11.q1k chr05 798 381 1471 1470 C 418 0.00 1390 reject_low 120 ALIGNMENT 0 Y12-7m11.q1k chr05 798 345 1471 1470 C 454 0.00 1390 reject_low 162 ALIGNMENT 0 Y12-7m11.q1k chr09 798 190 1698 1697 C 609 0.00 1390 reject_low 274 ALIGNMENT 0 Y12-7m11.q1k chr05 79 62 2059 2058 C 18 0.00 1390 reject_low 104 ALIGNMENT 170 Y12-7m11.q1k chr15 172 524 1089229 1089581 F 353 84.42 1390 reject_low 135 ALIGNMENT 94 Y12-7m11.q1k chr12 44 277 1076461 1076694 F 234 80.77 1390 reject_low 203 ALIGNMENT 0 Y12-7m11.q1k chr16 798 345 1484 1483 C 454 0.00 1390 reject_low 174 ALIGNMENT 173 Y12-7m11.q1k chr16 524 172 1555 1907 C 353 84.70 1390 reject_low 126 ALIGNMENT 0 Y12-7m11.q1k chr14 798 190 1586 1585 C 609 0.00 1390 reject_low 311 ALIGNMENT 241 Y12-7m11.q1k chr05 136 524 574893 575281 F 389 88.95 1390 reject_low 79 ALIGNMENT 90 Y12-7m11.q1k chr13 513 316 1894 2091 C 198 83.84 1390 reject_low 251 ALIGNMENT 142 Y12-7m11.q1k chr06 260 42 905 1123 C 219 89.04 1390 reject_low 132 ALIGNMENT 125 Y12-7m11.q1k chr08 48 308 560581 560841 F 261 83.52 1390 reject_low 165 ALIGNMENT 241 Y12-7m11.q1k chr14 524 136 1610 1998 C 389 88.95 1390 reject_low 83 ALIGNMENT 0 Y12-7m11.q1k chr05 525 798 575281 575280 F 274 0.00 1390 reject_low 79 ALIGNMENT 0 Y12-7m11.q1k chr04 453 798 1530488 1530487 F 346 0.00 1390 reject_low 68 ALIGNMENT 0 Y12-7m11.q1k chr15 278 798 1089658 1089657 F 521 0.00 1390 reject_low 206 ALIGNMENT 122 Y12-7m11.q1k chr04 48 344 1530192 1530488 F 297 81.48 1390 reject_low 167 ALIGNMENT 0 Y12-7m11.q1k chr16 62 171 945962 945961 F 110 0.00 1390 reject_low 116 ALIGNMENT 0 Y12-7m11.q1k chr13 798 525 1704 1703 C 274 0.00 1390 reject_low 82 ALIGNMENT 0 Y12-7m11.p1k chr02 62 472 4212 4211 F 411 0.00 1549 reject_low 34 ALIGNMENT 49 Y12-7m11.q1k chr12 63 153 1076588 1076678 F 91 85.71 1390 reject_low 329 ALIGNMENT 0 Y12-7m11.q1k chr04 62 351 1530064 1530063 F 290 0.00 1390 reject_low 297 ALIGNMENT 0 Y12-7m11.q1k chr02 179 62 2155 2154 C 118 0.00 1390 reject_low 145 ALIGNMENT 99 Y12-7m11.q1k chr12 280 524 1076265 1076509 F 245 82.45 1390 reject_low 408 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 2047 2046 C 274 0.00 1390 reject_low 227 ALIGNMENT 0 Y12-7m11.q1k chr12 798 129 1684 1683 C 670 0.00 1390 reject_low 341 ALIGNMENT 64 Y12-7m11.q1k chr07 352 525 1088970 1089143 F 174 81.03 1390 reject_low 290 ALIGNMENT 0 Y12-7m11.q1k chr12 62 268 1069627 1069626 F 207 0.00 1390 reject_low 234 ALIGNMENT 135 Y12-7m11.q1k chr05 344 59 1470 1755 C 286 83.57 1390 reject_low 162 ALIGNMENT 0 Y12-7m11.q1k chr07 62 409 1088992 1088991 F 348 0.00 1390 reject_low 316 ALIGNMENT 0 Y12-7m11.q1k chr06 798 381 894 893 C 418 0.00 1390 reject_low 164 ALIGNMENT 55 Y12-7m11.q1k chr13 524 410 1955 2069 C 115 85.22 1390 reject_low 318 ALIGNMENT 150 Y12-7m11.q1k chr02 525 216 1845 2154 C 310 84.84 1390 reject_low 148 ALIGNMENT 0 Y12-7m11.q1k chr16 207 62 1908 1907 C 146 0.00 1390 reject_low 191 ALIGNMENT 0 Y12-7m11.q1k chr13 798 514 2003 2002 C 285 0.00 1390 reject_low 361 ALIGNMENT 101 Y12-7m11.q1k chr16 269 521 945987 946239 F 253 82.21 1390 reject_low 226 ALIGNMENT 0 Y12-7m11.q1k chr13 798 190 1679 1678 C 609 0.00 1390 reject_low 310 ALIGNMENT 0 Y12-7m11.q1k chr15 309 798 1089653 1089652 F 490 0.00 1390 reject_low 157 ALIGNMENT 0 Y12-7m11.q1k chr10 300 62 2325 2324 C 239 0.00 1390 reject_low 338 ALIGNMENT 173 Y12-7m11.q1k chr13 524 172 1739 2091 C 353 84.70 1390 reject_low 124 ALIGNMENT 55 Y12-7m11.q1k chr16 524 410 1771 1885 C 115 85.22 1390 reject_low 320 ALIGNMENT 157 Y12-7m11.q1k chr15 44 380 1089317 1089653 F 337 83.38 1390 reject_low 141 ALIGNMENT 317 Y12-7m11.p1k chr08 473 1085 3743 4372 F 613 86.62 1549 reject_low 31 ALIGNMENT 0 Y12-7m11.q1k chr12 62 99 1069602 1069601 F 38 0.00 1390 accept_tel 0 ALIGNMENT 49 Y12-7m11.q1k chr12 63 153 1069925 1070015 F 91 85.71 1390|0,9 reject_low 396 ALIGNMENT 0 Y12-7m11.q1k chr04 514 798 1530153 1530152 F 285 0.00 1390 reject_low 356 ALIGNMENT 0 Y12-7m11.q1k chr16 798 309 1484 1483 C 490 0.00 1390 reject_low 158 ALIGNMENT 0 Y12-7m11.q1k chr12 522 798 1076578 1076577 F 277 0.00 1390 reject_low 412 ALIGNMENT 0 Y12-7m11.q1k chr08 798 526 1867 1866 C 273 0.00 1390 reject_low 381 ALIGNMENT 231 Y12-7m11.q1k chr02 524 63 1558 2019 C 462 84.85 1390 reject_low 89 ALIGNMENT 0 Y12-7m11.q1k chr12 449 450 2190 7328 C 0 0.00 1390 reject_low 395 ALIGNMENT 0 Y12-7m11.q1k chr07 525 798 1089358 1089357 F 274 0.00 1390 reject_low 80 ALIGNMENT 43 Y12-7m11.q1k chr07 446 513 1088992 1089059 F 68 89.71 1390 reject_low 358 ALIGNMENT 0 Y12-7m11.q1k chr16 798 226 1495 1494 C 573 0.00 1390 reject_low 270 ALIGNMENT 0 Y12-7m11.q1k chr16 62 315 945962 945961 F 254 0.00 1390 reject_low 254 ALIGNMENT 0 Y12-7m11.q1k chr02 357 62 2157 2156 C 296 0.00 1390 reject_low 314 ALIGNMENT 222 Y12-7m11.q1k chr16 100 524 945962 946386 F 425 85.65 1390 reject_low 96 ALIGNMENT 72 Y12-7m11.q1k chr05 513 279 1805 2039 C 235 79.15 1390 reject_low 282 ALIGNMENT 0 Y12-7m11.q1k chr02 798 154 1498 1497 C 645 0.00 1390 reject_low 323 ALIGNMENT 34 Y12-7m11.q1k chr02 524 466 2098 2156 C 59 88.14 1390 reject_low 380 ALIGNMENT 130 Y12-7m11.q1k chr06 380 44 893 1229 C 337 80.71 1390 reject_low 164 ALIGNMENT 64 Y12-7m11.q1k chr06 524 279 1001 1246 C 246 77.64 1390 reject_low 300 ALIGNMENT 132 Y12-7m11.q1k chr04 44 308 1530224 1530488 F 265 84.15 1390 reject_low 151 ALIGNMENT 241 Y12-7m11.q1k chr16 524 136 1519 1907 C 389 88.95 1390 reject_low 84 ALIGNMENT 57 Y12-7m11.q1k chr02 524 358 1990 2156 C 167 80.24 1390 reject_low 314 ALIGNMENT 0 Y12-7m11.q1k chr07 514 798 1089167 1089166 F 285 0.00 1390 reject_low 249 ALIGNMENT 173 Y12-7m11.q1k chr12 524 172 7398 7750 C 353 84.70 1390 reject_low 123 ALIGNMENT 0 Y12-7m11.q1k chr12 798 154 1695 1694 C 645 0.00 1390 reject_low 302 ALIGNMENT 0 Y12-7m11.q1k chr02 798 309 1487 1486 C 490 0.00 1390 reject_low 261 ALIGNMENT 43 Y12-7m11.q1k chr09 513 446 2165 2232 C 68 89.71 1390 reject_low 420 ALIGNMENT 132 Y12-7m11.q1k chr05 44 308 575053 575317 F 265 84.15 1390 reject_low 152 ALIGNMENT 0 Y12-7m11.q1k chr16 99 62 1908 1907 C 38 0.00 1390 reject_low 25 ALIGNMENT 0 Y12-7m11.q1k chr02 798 526 1846 1845 C 273 0.00 1390 reject_low 148 ALIGNMENT 0 Y12-7m11.q1k chr08 514 798 560506 560505 F 285 0.00 1390 reject_low 369 ALIGNMENT 0 Y12-7m11.p1k chr08 62 472 3743 3742 F 411 0.00 1549 reject_low 31 ALIGNMENT 0 Y12-7m11.q1k chr16 345 798 946494 946493 F 454 0.00 1390 reject_low 146 ALIGNMENT 94 Y12-7m11.q1k chr08 44 277 560613 560846 F 234 80.77 1390 reject_low 202 ALIGNMENT 230 Y12-7m11.q1k chr12 416 44 1683 2055 C 373 88.47 1390 reject_low 77 ALIGNMENT 0 Y12-7m11.q1k chr02 798 514 1678 1677 C 285 0.00 1390 reject_low 108 ALIGNMENT 237 Y12-7m11.q1k chr10 524 42 1741 2223 C 483 84.47 1390 reject_low 58 ALIGNMENT 0 Y12-7m11.q1k chr12 62 207 1069602 1069601 F 146 0.00 1390 reject_low 193 ALIGNMENT 232 Y12-7m11.q1k chr13 452 42 1667 2077 C 411 86.86 1390 reject_low 65 ALIGNMENT 94 Y12-7m11.q1k chr05 44 277 575089 575322 F 234 80.77 1390 reject_low 200 ALIGNMENT 0 Y12-7m11.q1k chr15 381 798 1089653 1089652 F 418 0.00 1390 reject_low 141 ALIGNMENT 0 Y12-7m11.q1k chr12 99 62 2216 2215 C 38 0.00 1390 reject_low 98 ALIGNMENT 90 Y12-7m11.q1k chr16 316 513 945962 946159 F 198 83.84 1390 reject_low 254 ALIGNMENT 0 Y12-7m11.q1k chr05 345 798 575317 575316 F 454 0.00 1390 reject_low 168 ALIGNMENT 0 Y12-7m11.q1k chr16 417 798 946494 946493 F 382 0.00 1390 reject_low 76 ALIGNMENT 64 Y12-7m11.q1k chr09 189 48 1697 1838 C 142 82.39 1390 reject_low 274 ALIGNMENT 0 Y12-7m11.q1k chr05 798 453 1471 1470 C 346 0.00 1390 reject_low 117 ALIGNMENT 122 Y12-7m11.q1k chr12 48 344 1069730 1070026 F 297 81.48 1390 reject_low 413 ALIGNMENT 0 Y12-7m11.q1k chr08 798 278 1647 1646 C 521 0.00 1390 reject_low 185 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1543 1542 C 274 0.00 1390 reject_low 46 ALIGNMENT 209 Y12-7m11.q1k chr16 48 452 946090 946494 F 405 85.19 1390 reject_low 100 ALIGNMENT 0 Y12-7m11.q1k chr08 345 62 1938 1937 C 284 0.00 1390 reject_low 322 ALIGNMENT 114 Y12-7m11.q1k chr08 280 524 560417 560661 F 245 84.49 1390 reject_low 195 ALIGNMENT 0 Y12-7m11.q1k chr08 798 514 1843 1842 C 285 0.00 1390 reject_low 367 ALIGNMENT 117 Y12-7m11.q1k chr16 48 277 946270 946499 F 230 84.35 1390 reject_low 175 ALIGNMENT 0 Y12-7m11.q1k chr14 798 514 1802 1801 C 285 0.00 1390 reject_low 252 ALIGNMENT 96 Y12-7m11.q1k chr08 488 239 1651 1900 C 250 81.60 1390 reject_low 240 ALIGNMENT 0 Y12-7m11.q1k chr02 422 62 2128 2127 C 361 0.00 1390 reject_low 288 ALIGNMENT 246 Y12-7m11.q1k chr02 524 48 1630 2106 C 477 85.32 1390 reject_low 56 ALIGNMENT 0 Y12-7m11.q1k chr15 154 798 1089642 1089641 F 645 0.00 1390 reject_low 332 ALIGNMENT 43 Y12-7m11.q1k chr15 446 513 1089251 1089318 F 68 89.71 1390 reject_low 363 ALIGNMENT 0 Y12-7m11.q1k chr12 798 226 1695 1694 C 573 0.00 1390 reject_low 241 ALIGNMENT 0 Y12-7m11.q1k chr02 143 62 2155 2154 C 82 0.00 1390 reject_low 107 ALIGNMENT 0 Y12-7m11.q1k chr04 278 798 1530493 1530492 F 521 0.00 1390 reject_low 199 ALIGNMENT 135 Y12-7m11.q1k chr06 416 33 893 1276 C 384 79.43 1390 reject_low 40 ALIGNMENT 0 Y12-7m11.q1k chr14 279 62 1999 1998 C 218 0.00 1390 reject_low 215 ALIGNMENT 0 Y12-7m11.q1k chr13 207 62 2092 2091 C 146 0.00 1390 reject_low 189 ALIGNMENT 0 Y12-7m11.q1k chr06 798 166 893 892 C 633 0.00 1390 reject_low 259 ALIGNMENT 101 Y12-7m11.q1k chr05 269 521 574918 575170 F 253 82.21 1390 reject_low 220 ALIGNMENT 0 Y12-7m11.q1k chr09 469 230 2245 2244 C 240 0.00 1390 reject_low 421 ALIGNMENT 0 Y12-7m11.q1k chr08 62 459 560417 560416 F 398 0.00 1390 reject_low 387 ALIGNMENT 0 Y12-7m11.q1k chr07 62 135 1088970 1088969 F 74 0.00 1390 reject_low 80 ALIGNMENT 0 Y12-7m11.q1k chr05 190 798 575306 575305 F 609 0.00 1390 reject_low 306 ALIGNMENT 0 Y12-7m11.q1k chr16 798 453 1484 1483 C 346 0.00 1390 reject_low 67 ALIGNMENT 0 Y12-7m11.q1k chr05 335 62 2055 2054 C 274 0.00 1390 reject_low 354 ALIGNMENT 283 Y12-7m11.q1k chr05 524 44 1542 2022 C 481 87.73 1390 reject_low 46 ALIGNMENT 0 Y12-7m11.q1k chr07 62 207 1088970 1088969 F 146 0.00 1390 reject_low 187 ALIGNMENT 0 Y12-7m11.q1k chr16 62 135 945962 945961 F 74 0.00 1390 reject_low 94 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 1919 1918 C 274 0.00 1390 reject_low 210 ALIGNMENT 0 Y12-7m11.q1k chr12 62 351 1069602 1069601 F 290 0.00 1390 reject_low 298 ALIGNMENT 226 Y12-7m11.q1k chr16 44 488 946050 946494 F 445 84.94 1390 reject_low 88 ALIGNMENT 100 Y12-7m11.q1k chr09 524 282 2046 2288 C 243 82.72 1390 reject_low 227 ALIGNMENT 72 Y12-7m11.q1k chr12 225 63 7337 7499 C 163 82.21 1390|9,0 reject_low 410 ALIGNMENT 70 Y12-7m11.q1k chr16 63 189 946357 946483 F 127 85.83 1390 reject_low 272 ALIGNMENT 106 Y12-7m11.q1k chr08 277 44 1646 1879 C 234 82.48 1390 reject_low 185 ALIGNMENT 680 Y12-7m11.q1k chr16 1096 100 908 1907 C 997 90.27 1390 reject_low 25 ALIGNMENT 0 Y12-7m11.q1k chr12 409 381 2194 7325 C 29 0.00 1390 reject_low 404 ALIGNMENT 68 Y12-7m11.q1k chr05 524 300 1830 2054 C 225 79.11 1390 reject_low 287 ALIGNMENT 149 Y12-7m11.q1k chr10 344 48 1669 1965 C 297 84.51 1390 reject_low 144 ALIGNMENT 41 Y12-7m11.q1k chr16 128 59 1483 1552 C 70 87.14 1390 reject_low 352 ALIGNMENT 0 Y12-7m11.q1k chr06 798 514 941 940 C 285 0.00 1390 reject_low 219 ALIGNMENT 122 Y12-7m11.q1k chr13 344 48 1667 1963 C 297 81.48 1390 reject_low 171 ALIGNMENT 747 Y12-7m11.p1k chr15 1085 14 1085637 1086728 C 1072 91.60 1549 reject_low 3 ALIGNMENT 0 Y12-7m11.q1k chr13 798 514 1895 1894 C 285 0.00 1390 reject_low 251 ALIGNMENT 41 Y12-7m11.q1k chr08 59 128 560772 560841 F 70 87.14 1390 reject_low 347 ALIGNMENT 0 Y12-7m11.q1k chr08 268 62 1907 1906 C 207 0.00 1390 reject_low 27 ALIGNMENT 0 Y12-7m11.q1k chr04 526 798 1530237 1530236 F 273 0.00 1390 reject_low 297 ALIGNMENT 160 Y12-7m11.q1k chr02 513 180 1821 2154 C 334 84.43 1390 reject_low 145 ALIGNMENT 72 Y12-7m11.q1k chr05 63 225 575144 575306 F 163 82.21 1390 reject_low 263 ALIGNMENT 87 Y12-7m11.q1k chr12 316 513 1076265 1076462 F 198 83.33 1390 reject_low 402 ALIGNMENT 0 Y12-7m11.q1k chr04 514 798 1530261 1530260 F 285 0.00 1390 reject_low 256 ALIGNMENT 0 Y12-7m11.q1k chr12 450 449 1070024 1076290 F 0 0.00 1390 reject_low 397 ALIGNMENT 0 Y12-7m11.q1k chr07 62 351 1088970 1088969 F 290 0.00 1390 reject_low 290 ALIGNMENT 43 Y12-7m11.q1k chr05 128 63 1470 1535 C 66 89.39 1390 reject_low 340 ALIGNMENT 0 Y12-7m11.q1k chr04 525 798 1530416 1530415 F 274 0.00 1390 reject_low 133 ALIGNMENT 41 Y12-7m11.q1k chr12 128 59 7326 7395 C 70 87.14 1390 reject_low 414 ALIGNMENT 0 Y12-7m11.q1k chr02 798 453 1487 1486 C 346 0.00 1390 reject_low 113 ALIGNMENT 0 Y12-7m11.q1k chr12 798 514 2019 2018 C 285 0.00 1390 reject_low 400 ALIGNMENT 49 Y12-7m11.q1k chr16 153 63 1494 1584 C 91 85.71 1390 reject_low 333 ALIGNMENT 0 Y12-7m11.q1k chr15 62 207 1089229 1089228 F 146 0.00 1390 reject_low 194 ALIGNMENT 0 Y12-7m11.q1k chr12 798 514 7554 7553 C 285 0.00 1390 reject_low 250 ALIGNMENT 0 Y12-7m11.q1k chr12 144 145 2207 7345 C 0 0.00 1390 reject_low 398 ALIGNMENT 0 Y12-7m11.q1k chr08 129 798 560841 560840 F 670 0.00 1390 reject_low 347 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1831 1830 C 274 0.00 1390 reject_low 287 ALIGNMENT 0 Y12-7m11.q1k chr04 345 798 1530488 1530487 F 454 0.00 1390 reject_low 167 ALIGNMENT 94 Y12-7m11.q1k chr12 277 44 7321 7554 C 234 80.77 1390|4,0 reject_low 406,407 ALIGNMENT 678 Y12-7m11.q1k chr12 1111 100 6737 7750 C 1012 89.92 1390 reject_low 11 ALIGNMENT 326 Y12-7m11.q1k chr10 488 48 1669 2109 C 441 92.74 1390 reject_low 39 ALIGNMENT 0 Y12-7m11.q1k chr02 798 489 1487 1486 C 310 0.00 1390 reject_low 91 ALIGNMENT 104 Y12-7m11.q1k chr08 225 40 1662 1847 C 186 86.02 1390 reject_low 119 ALIGNMENT 0 Y12-7m11.q1k chr05 62 135 574893 574892 F 74 0.00 1390 reject_low 79 ALIGNMENT 0 Y12-7m11.q1k chr12 798 417 1684 1683 C 382 0.00 1390 reject_low 77 ALIGNMENT 245 Y12-7m11.q1k chr16 416 44 1483 1855 C 373 89.81 1390 reject_low 55 ALIGNMENT 0 Y12-7m11.q1k chr08 62 135 560417 560416 F 74 0.00 1390 reject_low 50 ALIGNMENT 0 Y12-7m11.q1k chr16 525 798 946458 946457 F 274 0.00 1390 reject_low 44 ALIGNMENT 0 Y12-7m11.q1k chr16 798 522 1595 1594 C 277 0.00 1390 reject_low 191 ALIGNMENT 0 Y12-7m11.q1k chr08 798 525 1688 1687 C 274 0.00 1390 reject_low 236 ALIGNMENT 0 Y12-7m11.q1k chr07 345 798 1089394 1089393 F 454 0.00 1390 reject_low 169 ALIGNMENT 0 Y12-7m11.q1k chr16 62 207 945962 945961 F 146 0.00 1390 reject_low 177 ALIGNMENT 99 Y12-7m11.q1k chr15 280 524 1089229 1089473 F 245 82.45 1390 reject_low 230 ALIGNMENT 0 Y12-7m11.q1k chr16 798 525 1772 1771 C 274 0.00 1390 reject_low 320 ALIGNMENT 0 Y12-7m11.q1k chr13 798 526 1919 1918 C 273 0.00 1390 reject_low 292 ALIGNMENT 0 Y12-7m11.q1k chr08 798 129 1652 1651 C 670 0.00 1390 reject_low 301 ALIGNMENT 0 Y12-7m11.q1k chr02 105 62 2157 2156 C 44 0.00 1390 reject_low 136 ALIGNMENT 172 Y12-7m11.q1k chr02 380 44 1486 1822 C 337 84.87 1390 reject_low 114 ALIGNMENT 0 Y12-7m11.p1k chr12 62 472 9546 9545 F 411 0.00 1549 reject_low 32 ALIGNMENT 321 Y12-7m11.p1k chr16 1079 473 943542 944166 C 607 86.99 1549 reject_low 30 ALIGNMENT 0 Y12-7m11.q1k chr14 798 345 1575 1574 C 454 0.00 1390 reject_low 172 ALIGNMENT 242 Y12-7m11.q1k chr15 44 416 1089281 1089653 F 373 89.54 1390 reject_low 62 ALIGNMENT 307 Y12-7m11.p1k chr08 1085 473 557990 558619 C 613 86.13 1549 reject_low 35 ALIGNMENT 98 Y12-7m11.q1k chr12 269 521 1076290 1076542 F 253 81.82 1390|5,0 reject_low 409 ALIGNMENT 170 Y12-7m11.q1k chr12 172 524 1076265 1076617 F 353 84.42 1390|9,0 reject_low 403 ALIGNMENT 90 Y12-7m11.q1k chr12 513 316 7553 7750 C 198 83.84 1390 reject_low 250 ALIGNMENT 0 Y12-7m11.q1k chr06 798 489 894 893 C 310 0.00 1390 reject_low 232 ALIGNMENT 0 Y12-7m11.q1k chr14 798 525 1755 1754 C 274 0.00 1390 reject_low 215 ALIGNMENT 0 Y12-7m11.q1k chr15 525 798 1089473 1089472 F 274 0.00 1390 reject_low 230 ALIGNMENT 0 Y12-7m11.q1k chr07 525 798 1089214 1089213 F 274 0.00 1390 reject_low 212 ALIGNMENT 0 Y12-7m11.q1k chr12 129 459 1070027 1076264 F 331 0.00 1390 reject_low 415 ALIGNMENT 0 Y12-7m11.q1k chr13 445 62 2070 2069 C 384 0.00 1390 reject_low 361 ALIGNMENT 55 Y12-7m11.q1k chr12 63 189 1069889 1070015 F 127 81.89 1390|0,9 reject_low 403 ALIGNMENT 0 Y12-7m11.q1k chr13 798 453 1668 1667 C 346 0.00 1390 reject_low 65 ALIGNMENT 33 Y12-7m11.q1k chr12 460 525 1069602 1069667 F 66 84.85 1390 reject_low 374 ALIGNMENT 132 Y12-7m11.q1k chr13 308 44 1667 1931 C 265 84.15 1390 reject_low 155 ALIGNMENT 0 Y12-7m11.q1k chr08 62 268 560442 560441 F 207 0.00 1390 reject_low 197 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 1778 1777 C 274 0.00 1390 reject_low 72 ALIGNMENT 132 Y12-7m11.q1k chr12 308 44 7326 7590 C 265 84.15 1390 reject_low 400 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 1631 1630 C 274 0.00 1390 reject_low 56 ALIGNMENT 102 Y12-7m11.q1k chr12 524 280 1971 2215 C 245 82.86 1390 reject_low 406 ALIGNMENT 0 Y12-7m11.q1k chr12 226 798 1076678 1076677 F 573 0.00 1390 reject_low 266 ALIGNMENT 233 Y12-7m11.q1k chr16 44 416 946122 946494 F 373 88.74 1390 reject_low 76 ALIGNMENT 0 Y12-7m11.q1k chr13 798 345 1668 1667 C 454 0.00 1390 reject_low 171 ALIGNMENT 238 Y12-7m11.q1k chr12 136 524 1069602 1069990 F 389 88.69 1390 reject_low 86 ALIGNMENT 132 Y12-7m11.q1k chr14 308 44 1574 1838 C 265 84.15 1390 reject_low 156 ALIGNMENT 229 Y12-7m11.q1k chr04 42 452 1530078 1530488 F 411 86.62 1390 reject_low 68 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 1975 1974 C 274 0.00 1390 reject_low 416 ALIGNMENT 0 Y12-7m11.q1k chr08 190 798 560830 560829 F 609 0.00 1390 reject_low 308 ALIGNMENT 0 Y12-7m11.q1k chr14 207 62 1999 1998 C 146 0.00 1390 reject_low 190 ALIGNMENT 122 Y12-7m11.q1k chr12 48 344 1076393 1076689 F 297 81.48 1390 reject_low 170 ALIGNMENT 238 Y12-7m11.q1k chr15 136 524 1089229 1089617 F 389 88.69 1390 reject_low 87 ALIGNMENT 0 Y12-7m11.q1k chr08 525 798 560769 560768 F 274 0.00 1390 reject_low 110 ALIGNMENT 64 Y12-7m11.q1k chr16 525 352 1734 1907 C 174 81.03 1390 reject_low 294 ALIGNMENT 55 Y12-7m11.q1k chr13 189 63 1678 1804 C 127 81.89 1390 reject_low 310 ALIGNMENT 0 Y12-7m11.q1k chr13 798 381 1668 1667 C 418 0.00 1390 reject_low 129 ALIGNMENT 0 Y12-7m11.q1k chr16 62 351 945962 945961 F 290 0.00 1390 reject_low 295 ALIGNMENT 98 Y12-7m11.q1k chr04 269 521 1530089 1530341 F 253 81.82 1390 reject_low 233 ALIGNMENT 103 Y12-7m11.q1k chr06 513 188 940 1265 C 326 78.83 1390 reject_low 219 ALIGNMENT 117 Y12-7m11.q1k chr12 208 521 1076265 1076578 F 314 80.89 1390|9,0 reject_low 412 ALIGNMENT 0 Y12-7m11.q1k chr15 522 798 1089506 1089505 F 277 0.00 1390 reject_low 235 ALIGNMENT 0 Y12-7m11.q1k chr12 798 278 1679 1678 C 521 0.00 1390 reject_low 179 ALIGNMENT 40 Y12-7m11.q1k chr08 513 446 1842 1909 C 68 88.24 1390 reject_low 367 ALIGNMENT 0 Y12-7m11.p1k chr12 62 472 4011 4010 F 411 0.00 1549 reject_low 11 ALIGNMENT 56 Y12-7m11.q1k chr08 524 346 1759 1937 C 179 79.33 1390 reject_low 322 ALIGNMENT 49 Y12-7m11.q1k chr07 63 153 1089293 1089383 F 91 85.71 1390 reject_low 326 ALIGNMENT 72 Y12-7m11.q1k chr16 225 63 1494 1656 C 163 82.21 1390 reject_low 270 ALIGNMENT 120 Y12-7m11.q1k chr14 521 208 1685 1998 C 314 81.21 1390 reject_low 190 ALIGNMENT 0 Y12-7m11.q1k chr13 798 525 1848 1847 C 274 0.00 1390 reject_low 214 ALIGNMENT 0 Y12-7m11.q1k chr08 522 798 560694 560693 F 277 0.00 1390 reject_low 197 ALIGNMENT 41 Y12-7m11.q1k chr14 128 59 1574 1643 C 70 87.14 1390 reject_low 350 ALIGNMENT 64 Y12-7m11.q1k chr16 352 525 945962 946135 F 174 81.03 1390 reject_low 295 ALIGNMENT 0 Y12-7m11.q1k chr12 145 144 1070007 1076273 F 0 0.00 1390 reject_low 396 ALIGNMENT 0 Y12-7m11.q1k chr12 459 62 7751 7750 C 398 0.00 1390 reject_low 373 ALIGNMENT 0 Y12-7m11.q1k chr05 798 514 1806 1805 C 285 0.00 1390 reject_low 282 ALIGNMENT 0 Y12-7m11.q1k chr08 129 62 1938 1937 C 68 0.00 1390 reject_low 142 ALIGNMENT 0 Y12-7m11.q1k chr13 315 62 2092 2091 C 254 0.00 1390 reject_low 251 ALIGNMENT 0 Y12-7m11.q1k chr14 798 522 1722 1721 C 277 0.00 1390 reject_low 224 ALIGNMENT 99 Y12-7m11.q1k chr12 280 524 1069602 1069846 F 245 82.45 1390 reject_low 229 ALIGNMENT 33 Y12-7m11.q1k chr12 525 460 2150 2215 C 66 84.85 1390 reject_low 414 ALIGNMENT 0 Y12-7m11.q1k chr04 525 798 1530452 1530451 F 274 0.00 1390 reject_low 85 ALIGNMENT 132 Y12-7m11.q1k chr15 44 308 1089389 1089653 F 265 84.15 1390 reject_low 157 ALIGNMENT 157 Y12-7m11.q1k chr04 44 380 1530152 1530488 F 337 83.38 1390 reject_low 137 ALIGNMENT 291 Y12-7m11.q1k chr05 524 42 1506 1988 C 483 88.20 1390 reject_low 41 ALIGNMENT 677 Y12-7m11.q1k chr04 100 1096 1530064 1531063 F 997 90.17 1390 reject_low 26 ALIGNMENT 0 Y12-7m11.q1k chr10 278 62 2311 2310 C 217 0.00 1390 reject_low 280 ALIGNMENT 0 Y12-7m11.q1k chr02 249 62 2157 2156 C 188 0.00 1390 reject_low 184 ALIGNMENT 0 Y12-7m11.q1k chr14 798 309 1575 1574 C 490 0.00 1390 reject_low 156 ALIGNMENT 0 Y12-7m11.q1k chr12 798 381 1684 1683 C 418 0.00 1390 reject_low 106 ALIGNMENT 0 Y12-7m11.q1k chr10 798 453 1670 1669 C 346 0.00 1390 reject_low 49 ALIGNMENT 93 Y12-7m11.q1k chr08 316 513 560417 560614 F 198 84.34 1390 reject_low 243 ALIGNMENT 0 Y12-7m11.q1k chr14 798 526 1826 1825 C 273 0.00 1390 reject_low 293 ALIGNMENT 0 Y12-7m11.q1k chr13 798 526 2027 2026 C 273 0.00 1390 reject_low 375 ALIGNMENT 0 Y12-7m11.q1k chr05 62 459 574893 574892 F 398 0.00 1390 reject_low 371 ALIGNMENT 33 Y12-7m11.q1k chr14 525 460 1933 1998 C 66 84.85 1390 reject_low 376 ALIGNMENT 0 Y12-7m11.q1k chr12 345 351 1070027 1076264 F 7 0.00 1390 reject_low 413 ALIGNMENT 0 Y12-7m11.q1k chr07 62 315 1088970 1088969 F 254 0.00 1390 reject_low 249 ALIGNMENT 94 Y12-7m11.q1k chr04 44 277 1530260 1530493 F 234 80.77 1390 reject_low 199 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1579 1578 C 274 0.00 1390 reject_low 36 ALIGNMENT 0 Y12-7m11.q1k chr05 525 798 575137 575136 F 274 0.00 1390 reject_low 211 ALIGNMENT 31 Y12-7m11.q1k chr08 460 513 560417 560470 F 54 87.04 1390 reject_low 387 ALIGNMENT 117 Y12-7m11.q1k chr04 208 521 1530064 1530377 F 314 80.89 1390 reject_low 192 ALIGNMENT 228 Y12-7m11.q1k chr10 524 42 1777 2259 C 483 83.85 1390 reject_low 72 ALIGNMENT 705 Y12-7m11.q1k chr08 100 1111 560417 561430 F 1012 90.81 1390 reject_low 15 ALIGNMENT 0 Y12-7m11.q1k chr12 154 798 1076678 1076677 F 645 0.00 1390 reject_low 329 ALIGNMENT 97 Y12-7m11.q1k chr08 524 279 1687 1932 C 246 82.11 1390 reject_low 236 ALIGNMENT 0 Y12-7m11.q1k chr05 514 798 575090 575089 F 285 0.00 1390 reject_low 248 ALIGNMENT 0 Y12-7m11.q1k chr10 160 62 2321 2320 C 99 0.00 1390 reject_low 147 ALIGNMENT 61 Y12-7m11.q1k chr12 352 525 1069602 1069775 F 174 80.46 1390 reject_low 298 ALIGNMENT 0 Y12-7m11.q1k chr05 798 190 1482 1481 C 609 0.00 1390 reject_low 260 ALIGNMENT 37 Y12-7m11.q1k chr06 93 44 892 941 C 50 92.00 1390 reject_low 337 ALIGNMENT 326 Y12-7m11.q1k chr09 488 48 1686 2126 C 441 92.74 1390 reject_low 38 ALIGNMENT 167 Y12-7m11.q1k chr02 524 106 1738 2156 C 419 81.62 1390 reject_low 136 ALIGNMENT 0 Y12-7m11.q1k chr13 798 278 1663 1662 C 521 0.00 1390 reject_low 204 ALIGNMENT 122 Y12-7m11.q1k chr16 344 48 1483 1779 C 297 81.48 1390 reject_low 174 ALIGNMENT 0 Y12-7m11.q1k chr08 798 525 1724 1723 C 274 0.00 1390 reject_low 273 ALIGNMENT 84 Y12-7m11.q1k chr09 277 63 1681 1895 C 215 80.47 1390 reject_low 246 ALIGNMENT 0 Y12-7m11.q1k chr12 798 190 1695 1694 C 609 0.00 1390 reject_low 271 ALIGNMENT 0 Y12-7m11.q1k chr09 445 230 2233 2244 C 216 0.00 1390 reject_low 420 ALIGNMENT 0 Y12-7m11.q1k chr07 62 459 1088970 1088969 F 398 0.00 1390 reject_low 372 ALIGNMENT 0 Y12-7m11.q1k chr16 525 798 946098 946097 F 274 0.00 1390 reject_low 321 ALIGNMENT 0 Y12-7m11.q1k chr06 335 62 1262 1261 C 274 0.00 1390 reject_low 386 ALIGNMENT 0 Y12-7m11.q1k chr05 525 798 575245 575244 F 274 0.00 1390 reject_low 121 ALIGNMENT 141 Y12-7m11.q1k chr10 513 121 1932 2324 C 393 80.15 1390 reject_low 163 ALIGNMENT 0 Y12-7m11.q1k chr08 62 445 560439 560438 F 384 0.00 1390 reject_low 369 ALIGNMENT 0 Y12-7m11.q1k chr14 268 62 1974 1973 C 207 0.00 1390 reject_low 224 ALIGNMENT 43 Y12-7m11.q1k chr16 63 128 946429 946494 F 66 89.39 1390 reject_low 342 ALIGNMENT 55 Y12-7m11.q1k chr08 63 189 560704 560830 F 127 81.89 1390 reject_low 308 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 1559 1558 C 274 0.00 1390 reject_low 89 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1759 1758 C 274 0.00 1390 reject_low 237 ALIGNMENT 142 Y12-7m11.q1k chr09 513 239 1949 2223 C 275 85.82 1390 reject_low 417 ALIGNMENT 102 Y12-7m11.q1k chr12 524 280 7506 7750 C 245 82.86 1390 reject_low 213 ALIGNMENT 0 Y12-7m11.q1k chr05 798 154 1482 1481 C 645 0.00 1390 reject_low 353 ALIGNMENT 55 Y12-7m11.q1k chr12 189 63 7337 7463 C 127 81.89 1390|9,0 reject_low 399 ALIGNMENT 0 Y12-7m11.q1k chr09 281 62 2289 2288 C 220 0.00 1390 reject_low 227 ALIGNMENT 172 Y12-7m11.q1k chr08 44 380 560505 560841 F 337 84.87 1390 reject_low 115 ALIGNMENT 0 Y12-7m11.q1k chr12 62 279 1069602 1069601 F 218 0.00 1390 reject_low 229 ALIGNMENT 120 Y12-7m11.q1k chr16 521 208 1594 1907 C 314 81.21 1390 reject_low 191 ALIGNMENT 0 Y12-7m11.q1k chr12 180 181 2207 7345 C 0 0.00 1390 reject_low 399 ALIGNMENT 0 Y12-7m11.q1k chr12 273 274 2186 7324 C 0 0.00 1390 reject_low 407 ALIGNMENT 90 Y12-7m11.q1k chr14 513 316 1801 1998 C 198 83.84 1390 reject_low 252 ALIGNMENT 173 Y12-7m11.q1k chr14 524 172 1646 1998 C 353 84.70 1390 reject_low 125 ALIGNMENT 0 Y12-7m11.q1k chr12 798 309 1684 1683 C 490 0.00 1390 reject_low 255 ALIGNMENT 0 Y12-7m11.q1k chr04 62 135 1530064 1530063 F 74 0.00 1390 reject_low 85 ALIGNMENT 55 Y12-7m11.q1k chr12 63 189 1076552 1076678 F 127 81.89 1390 reject_low 309 ALIGNMENT 0 Y12-7m11.q1k chr08 62 315 560417 560416 F 254 0.00 1390 reject_low 243 ALIGNMENT 132 Y12-7m11.q1k chr08 208 521 560417 560730 F 314 82.48 1390 reject_low 166 ALIGNMENT 0 Y12-7m11.q1k chr04 417 798 1530488 1530487 F 382 0.00 1390 reject_low 60 ALIGNMENT 0 Y12-7m11.q1k chr05 798 82 1482 1481 C 717 0.00 1390 reject_low 389 ALIGNMENT 238 Y12-7m11.q1k chr04 136 524 1530064 1530452 F 389 88.69 1390 reject_low 85 ALIGNMENT 0 Y12-7m11.q1k chr12 522 798 1069915 1069914 F 277 0.00 1390 reject_low 193 ALIGNMENT 43 Y12-7m11.q1k chr13 513 446 2002 2069 C 68 89.71 1390 reject_low 361 ALIGNMENT 0 Y12-7m11.q1k chr02 798 417 1487 1486 C 382 0.00 1390 reject_low 97 ALIGNMENT 52 Y12-7m11.q1k chr12 410 524 1076287 1076401 F 115 84.35 1390|4,0 reject_low 394,405 ALIGNMENT 0 Y12-7m11.q1k chr16 514 798 946159 946158 F 285 0.00 1390 reject_low 254 ALIGNMENT 121 Y12-7m11.q1k chr05 524 188 1722 2058 C 337 80.42 1390 reject_low 183 ALIGNMENT 209 Y12-7m11.q1k chr05 524 80 1614 2058 C 445 83.82 1390 reject_low 104 ALIGNMENT 55 Y12-7m11.q1k chr12 524 410 2079 2193 C 115 85.22 1390|0,4 reject_low 393,404 ALIGNMENT 132 Y12-7m11.q1k chr07 44 308 1089130 1089394 F 265 84.15 1390 reject_low 153 ALIGNMENT 0 Y12-7m11.q1k chr05 299 62 2055 2054 C 238 0.00 1390 reject_low 287 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 1723 1722 C 274 0.00 1390 reject_low 42 ALIGNMENT 242 Y12-7m11.q1k chr12 44 416 1069654 1070026 F 373 89.54 1390|0,3 reject_low 394 ALIGNMENT 117 Y12-7m11.q1k chr12 208 521 1069602 1069915 F 314 80.89 1390 reject_low 193 ALIGNMENT 0 Y12-7m11.q1k chr10 798 514 2149 2148 C 285 0.00 1390 reject_low 385 ALIGNMENT 0 Y12-7m11.q1k chr16 62 459 945962 945961 F 398 0.00 1390 reject_low 379 ALIGNMENT 236 Y12-7m11.q1k chr09 524 122 1830 2232 C 403 87.84 1390 reject_low 90 ALIGNMENT 0 Y12-7m11.q1k chr05 62 268 574918 574917 F 207 0.00 1390 reject_low 220 ALIGNMENT 61 Y12-7m11.q1k chr04 352 525 1530064 1530237 F 174 80.46 1390 reject_low 297 ALIGNMENT 229 Y12-7m11.q1k chr12 42 452 1076279 1076689 F 411 86.62 1390 reject_low 69 ALIGNMENT 20 Y12-7m11.q1k chr16 59 81 946461 946483 F 23 95.65 1390 reject_low 392 ALIGNMENT 102 Y12-7m11.q1k chr16 524 280 1663 1907 C 245 82.86 1390 reject_low 216 ALIGNMENT 0 Y12-7m11.q1k chr07 381 798 1089394 1089393 F 418 0.00 1390 reject_low 128 ALIGNMENT 0 Y12-7m11.q1k chr09 277 230 2257 2244 C 48 0.00 1390 reject_low 418 ALIGNMENT 0 Y12-7m11.q1k chr14 135 62 1999 1998 C 74 0.00 1390 reject_low 83 ALIGNMENT 245 Y12-7m11.q1k chr14 416 44 1574 1946 C 373 89.81 1390 reject_low 54 ALIGNMENT 0 Y12-7m11.q1k chr13 798 525 1740 1739 C 274 0.00 1390 reject_low 124 ALIGNMENT 0 Y12-7m11.q1k chr08 798 489 1652 1651 C 310 0.00 1390 reject_low 240 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1076617 1076616 F 274 0.00 1390 reject_low 403 ALIGNMENT 0 Y12-7m11.q1k chr02 215 62 2155 2154 C 154 0.00 1390 reject_low 148 ALIGNMENT 773 Y12-7m11.p1k chr09 14 1078 4887 5972 F 1065 92.58 1549 reject_low 2 ALIGNMENT 84 Y12-7m11.q1k chr10 277 63 1664 1878 C 215 80.47 1390 reject_low 247 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 1828 1827 C 274 0.00 1390 reject_low 398 ALIGNMENT 0 Y12-7m11.q1k chr13 409 62 2070 2069 C 348 0.00 1390 reject_low 318 ALIGNMENT 0 Y12-7m11.q1k chr16 798 526 1735 1734 C 273 0.00 1390 reject_low 294 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 7363 7362 C 274 0.00 1390 reject_low 81 ALIGNMENT 0 Y12-7m11.q1k chr05 151 62 2059 2058 C 90 0.00 1390 reject_low 159 ALIGNMENT 0 Y12-7m11.q1k chr10 798 514 1933 1932 C 285 0.00 1390 reject_low 163 ALIGNMENT 0 Y12-7m11.q1k chr15 514 798 1089318 1089317 F 285 0.00 1390 reject_low 363 ALIGNMENT 33 Y12-7m11.q1k chr12 525 460 7685 7750 C 66 84.85 1390 reject_low 373 ALIGNMENT 0 Y12-7m11.q1k chr05 798 526 1902 1901 C 273 0.00 1390 reject_low 388 ALIGNMENT 41 Y12-7m11.q1k chr13 128 59 1667 1736 C 70 87.14 1390 reject_low 349 ALIGNMENT 0 Y12-7m11.q1k chr16 798 278 1479 1478 C 521 0.00 1390 reject_low 207 ALIGNMENT 0 Y12-7m11.q1k chr10 120 62 2325 2324 C 59 0.00 1390 reject_low 163 ALIGNMENT 0 Y12-7m11.q1k chr12 459 129 2216 7325 C 331 0.00 1390 reject_low 414 ALIGNMENT 0 Y12-7m11.q1k chr16 798 522 1631 1630 C 277 0.00 1390 reject_low 225 ALIGNMENT 0 Y12-7m11.q1k chr12 798 522 7474 7473 C 277 0.00 1390 reject_low 222 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 1706 1705 C 274 0.00 1390 reject_low 43 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 1867 1866 C 274 0.00 1390 reject_low 99 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 1795 1794 C 274 0.00 1390 reject_low 71 ALIGNMENT 120 Y12-7m11.q1k chr12 521 208 7437 7750 C 314 81.21 1390 reject_low 188 ALIGNMENT 317 Y12-7m11.p1k chr12 473 1085 9546 10175 F 613 86.62 1549 reject_low 32 ALIGNMENT 0 Y12-7m11.q1k chr12 798 514 1875 1874 C 285 0.00 1390 reject_low 399 ALIGNMENT 0 Y12-7m11.q1k chr04 190 798 1530477 1530476 F 609 0.00 1390 reject_low 305 ALIGNMENT 0 Y12-7m11.q1k chr05 62 279 574893 574892 F 218 0.00 1390 reject_low 211 ALIGNMENT 0 Y12-7m11.q1k chr09 798 526 2190 2189 C 273 0.00 1390 reject_low 421 ALIGNMENT 0 Y12-7m11.q1k chr08 514 798 560614 560613 F 285 0.00 1390 reject_low 243 ALIGNMENT 113 Y12-7m11.q1k chr08 269 521 560442 560694 F 253 83.79 1390 reject_low 197 ALIGNMENT 83 Y12-7m11.q1k chr12 308 63 1683 1928 C 246 78.86 1390 reject_low 255 ALIGNMENT 242 Y12-7m11.q1k chr04 44 416 1530116 1530488 F 373 89.54 1390 reject_low 60 ALIGNMENT 122 Y12-7m11.q1k chr12 344 48 7326 7622 C 297 81.48 1390 reject_low 411 ALIGNMENT 0 Y12-7m11.q1k chr02 798 190 1498 1497 C 609 0.00 1390 reject_low 304 ALIGNMENT 0 Y12-7m11.q1k chr13 99 62 2092 2091 C 38 0.00 1390 reject_low 21 ALIGNMENT 0 Y12-7m11.q1k chr05 62 99 574893 574892 F 38 0.00 1390 reject_low 19 ALIGNMENT 33 Y12-7m11.q1k chr12 460 525 1076265 1076330 F 66 84.85 1390 reject_low 415 ALIGNMENT 61 Y12-7m11.q1k chr15 352 525 1089229 1089402 F 174 80.46 1390 reject_low 299 ALIGNMENT 0 Y12-7m11.q1k chr07 514 798 1089059 1089058 F 285 0.00 1390 reject_low 358 ALIGNMENT 55 Y12-7m11.q1k chr07 63 189 1089257 1089383 F 127 81.89 1390 reject_low 307 ALIGNMENT 43 Y12-7m11.q1k chr05 446 513 574915 574982 F 68 89.71 1390 reject_low 357 ALIGNMENT 0 Y12-7m11.q1k chr06 798 309 894 893 C 490 0.00 1390 reject_low 161 ALIGNMENT 0 Y12-7m11.q1k chr08 62 279 560417 560416 F 218 0.00 1390 reject_low 195 ALIGNMENT 160 Y12-7m11.q1k chr12 380 44 7326 7662 C 337 83.68 1390 reject_low 404 ALIGNMENT 0 Y12-7m11.p1k chr16 472 62 944167 944166 C 411 0.00 1549 reject_low 30 ALIGNMENT 0 Y12-7m11.q1k chr12 798 526 2151 2150 C 273 0.00 1390 reject_low 414 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1069738 1069737 F 274 0.00 1390 reject_low 335 ALIGNMENT 72 Y12-7m11.q1k chr14 225 63 1585 1747 C 163 82.21 1390 reject_low 268 ALIGNMENT 770 Y12-7m11.q1k chr12 1111 44 1094 2163 C 1068 91.57 1390 reject_low 12 ALIGNMENT 0 Y12-7m11.q1k chr04 525 798 1530308 1530307 F 274 0.00 1390 reject_low 228 ALIGNMENT 157 Y12-7m11.q1k chr09 380 44 1686 2022 C 337 83.38 1390 reject_low 138 ALIGNMENT 0 Y12-7m11.q1k chr16 525 798 946386 946385 F 274 0.00 1390 reject_low 96 ALIGNMENT 0 Y12-7m11.q1k chr05 154 798 575306 575305 F 645 0.00 1390 reject_low 325 ALIGNMENT 26 Y12-7m11.q1k chr09 229 176 2245 2298 C 54 83.33 1390|0,9 reject_low 416,417,418,419,420,421 ALIGNMENT 232 Y12-7m11.q1k chr07 42 452 1088984 1089394 F 411 86.86 1390 reject_low 64 ALIGNMENT 0 Y12-7m11.q1k chr10 469 62 2228 2227 C 408 0.00 1390 reject_low 382 ALIGNMENT 94 Y12-7m11.q1k chr16 277 44 1478 1711 C 234 80.77 1390 reject_low 207 ALIGNMENT 149 Y12-7m11.q1k chr16 63 344 946213 946494 F 282 85.46 1390 reject_low 146 ALIGNMENT 55 Y12-7m11.q1k chr02 189 63 1497 1623 C 127 81.89 1390 reject_low 304 ALIGNMENT 0 Y12-7m11.q1k chr13 798 226 1679 1678 C 573 0.00 1390 reject_low 267 ALIGNMENT 0 Y12-7m11.q1k chr12 171 62 7751 7750 C 110 0.00 1390 reject_low 123 ALIGNMENT 0 Y12-7m11.q1k chr12 62 459 1069602 1069601 F 398 0.00 1390 reject_low 374 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 1991 1990 C 274 0.00 1390 reject_low 314 ALIGNMENT 160 Y12-7m11.q1k chr05 44 380 574981 575317 F 337 83.68 1390 reject_low 127 ALIGNMENT 64 Y12-7m11.q1k chr12 525 352 7577 7750 C 174 81.03 1390 reject_low 291 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 2102 2101 C 274 0.00 1390 reject_low 338 ALIGNMENT 0 Y12-7m11.q1k chr15 62 409 1089251 1089250 F 348 0.00 1390 reject_low 336 ALIGNMENT 0 Y12-7m11.q1k chr12 62 409 1069624 1069623 F 348 0.00 1390 reject_low 335 ALIGNMENT 0 Y12-7m11.q1k chr16 798 514 1819 1818 C 285 0.00 1390 reject_low 364 ALIGNMENT 50 Y12-7m11.q1k chr16 48 153 946378 946483 F 106 83.02 1390 reject_low 303 ALIGNMENT 681 Y12-7m11.q1k chr15 100 1111 1089229 1090242 F 1012 90.02 1390 reject_low 22 ALIGNMENT 0 Y12-7m11.q1k chr07 522 798 1089283 1089282 F 277 0.00 1390 reject_low 187 ALIGNMENT 0 Y12-7m11.q1k chr09 798 514 1950 1949 C 285 0.00 1390 reject_low 417 ALIGNMENT 173 Y12-7m11.q1k chr07 172 524 1088970 1089322 F 353 84.70 1390 reject_low 122 ALIGNMENT 683 Y12-7m11.q1k chr07 100 1107 1088970 1089979 F 1008 90.18 1390 reject_low 23 ALIGNMENT 0 Y12-7m11.q1k chr05 798 417 1471 1470 C 382 0.00 1390 reject_low 111 ALIGNMENT 0 Y12-7m11.q1k chr16 526 798 946027 946026 F 273 0.00 1390 reject_low 379 ALIGNMENT 0 Y12-7m11.q1k chr16 62 268 945987 945986 F 207 0.00 1390 reject_low 226 ALIGNMENT 0 Y12-7m11.q1k chr14 798 154 1586 1585 C 645 0.00 1390 reject_low 331 ALIGNMENT 98 Y12-7m11.q1k chr15 269 521 1089254 1089506 F 253 81.82 1390 reject_low 235 ALIGNMENT 0 Y12-7m11.q1k chr13 798 522 1779 1778 C 277 0.00 1390 reject_low 189 ALIGNMENT 0 Y12-7m11.q1k chr16 190 798 946483 946482 F 609 0.00 1390 reject_low 272 ALIGNMENT 167 Y12-7m11.q1k chr08 344 48 1651 1947 C 297 86.53 1390 reject_low 118 ALIGNMENT 173 Y12-7m11.q1k chr05 172 524 574893 575245 F 353 84.70 1390 reject_low 121 ALIGNMENT 681 Y12-7m11.q1k chr12 100 1111 1076265 1077278 F 1012 90.02 1390 reject_low 20 ALIGNMENT 747 Y12-7m11.p1k chr12 1085 14 1072673 1073764 C 1072 91.60 1549 accept_tel 0 ALIGNMENT 97 Y12-7m11.q1k chr05 524 224 1758 2058 C 301 79.40 1390 reject_low 237 ALIGNMENT 67 Y12-7m11.q1k chr06 165 48 892 1009 C 118 86.44 1390 reject_low 259 ALIGNMENT 43 Y12-7m11.q1k chr08 513 410 1806 1909 C 104 82.69 1390 reject_low 366 ALIGNMENT 160 Y12-7m11.q1k chr13 380 44 1667 2003 C 337 83.68 1390 reject_low 129 ALIGNMENT 160 Y12-7m11.q1k chr07 44 380 1089058 1089394 F 337 83.68 1390 reject_low 128 ALIGNMENT 0 Y12-7m11.q1k chr07 62 268 1088995 1088994 F 207 0.00 1390 reject_low 221 ALIGNMENT 0 Y12-7m11.q1k chr12 414 413 1070024 1076290 F 0 0.00 1390 reject_low 394 ALIGNMENT 31 Y12-7m11.q1k chr09 128 63 1686 1751 C 66 83.33 1390 reject_low 383 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 2119 2118 C 274 0.00 1390 reject_low 419 ALIGNMENT 0 Y12-7m11.q1k chr02 798 345 1487 1486 C 454 0.00 1390 reject_low 160 ALIGNMENT 132 Y12-7m11.q1k chr12 44 308 1069762 1070026 F 265 84.15 1390 reject_low 402 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 7507 7506 C 274 0.00 1390 reject_low 213 ALIGNMENT 0 Y12-7m11.q1k chr05 62 409 574915 574914 F 348 0.00 1390 reject_low 315 ALIGNMENT 0 Y12-7m11.q1k chr05 381 798 575317 575316 F 418 0.00 1390 reject_low 127 ALIGNMENT 0 Y12-7m11.q1k chr06 151 62 1266 1265 C 90 0.00 1390 reject_low 29 ALIGNMENT 0 Y12-7m11.q1k chr07 129 798 1089394 1089393 F 670 0.00 1390 reject_low 346 ALIGNMENT 257 Y12-7m11.q1k chr10 452 48 1669 2073 C 405 89.14 1390 reject_low 49 ALIGNMENT 0 Y12-7m11.q1k chr15 62 445 1089251 1089250 F 384 0.00 1390 reject_low 363 ALIGNMENT 0 Y12-7m11.q1k chr08 381 798 560841 560840 F 418 0.00 1390 reject_low 115 ALIGNMENT 232 Y12-7m11.q1k chr14 452 42 1574 1984 C 411 86.86 1390 reject_low 66 ALIGNMENT 0 Y12-7m11.q1k chr02 798 129 1487 1486 C 670 0.00 1390 reject_low 343 ALIGNMENT 106 Y12-7m11.q1k chr10 524 233 2029 2320 C 292 80.82 1390 reject_low 208 ALIGNMENT 212 Y12-7m11.q1k chr02 521 70 1705 2156 C 452 83.85 1390 reject_low 102 ALIGNMENT 20 Y12-7m11.q1k chr05 81 59 1481 1503 C 23 95.65 1390 reject_low 389 ALIGNMENT 41 Y12-7m11.q1k chr12 59 128 1076620 1076689 F 70 87.14 1390 reject_low 348 ALIGNMENT 282 Y12-7m11.q1k chr12 524 42 1719 2201 C 483 87.58 1390 reject_low 45 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 1792 1791 C 274 0.00 1390 reject_low 98 ALIGNMENT 0 Y12-7m11.q1k chr08 445 62 1910 1909 C 384 0.00 1390 reject_low 367 ALIGNMENT 0 Y12-7m11.q1k chr06 798 261 906 905 C 538 0.00 1390 reject_low 132 ALIGNMENT 122 Y12-7m11.q1k chr07 48 344 1089098 1089394 F 297 81.48 1390 reject_low 169 ALIGNMENT 0 Y12-7m11.q1k chr02 798 530 1770 1769 C 269 0.00 1390 reject_low 107 ALIGNMENT 47 Y12-7m11.q1k chr05 513 336 1877 2054 C 178 77.53 1390 reject_low 354 ALIGNMENT 0 Y12-7m11.q1k chr12 274 273 1070028 1076294 F 0 0.00 1390 reject_low 409 ALIGNMENT 0 Y12-7m11.q1k chr06 798 526 1073 1072 C 273 0.00 1390 reject_low 386 ALIGNMENT 0 Y12-7m11.q1k chr16 798 417 1484 1483 C 382 0.00 1390 reject_low 55 ALIGNMENT 0 Y12-7m11.q1k chr05 62 445 574915 574914 F 384 0.00 1390 reject_low 357 ALIGNMENT 0 Y12-7m11.q1k chr08 62 409 560439 560438 F 348 0.00 1390 reject_low 339 ALIGNMENT 117 Y12-7m11.q1k chr15 208 521 1089229 1089542 F 314 80.89 1390 reject_low 194 ALIGNMENT 33 Y12-7m11.q1k chr04 460 525 1530064 1530129 F 66 84.85 1390 reject_low 370 ALIGNMENT 0 Y12-7m11.q1k chr02 798 514 1822 1821 C 285 0.00 1390 reject_low 145 ALIGNMENT 0 Y12-7m11.q1k chr09 798 530 1898 1897 C 269 0.00 1390 reject_low 401 ALIGNMENT 0 Y12-7m11.q1k chr04 62 268 1530089 1530088 F 207 0.00 1390 reject_low 233 ALIGNMENT 72 Y12-7m11.q1k chr08 63 225 560668 560830 F 163 82.21 1390 reject_low 265 ALIGNMENT 55 Y12-7m11.q1k chr16 189 63 1494 1620 C 127 81.89 1390 reject_low 313 ALIGNMENT 0 Y12-7m11.q1k chr06 798 202 893 892 C 597 0.00 1390 reject_low 231 ALIGNMENT 0 Y12-7m11.q1k chr08 798 345 1652 1651 C 454 0.00 1390 reject_low 118 ALIGNMENT 0 Y12-7m11.q1k chr16 62 279 945962 945961 F 218 0.00 1390 reject_low 217 ALIGNMENT 0 Y12-7m11.q1k chr13 135 62 2092 2091 C 74 0.00 1390 reject_low 82 ALIGNMENT 0 Y12-7m11.q1k chr12 798 345 1684 1683 C 454 0.00 1390 reject_low 149 ALIGNMENT 0 Y12-7m11.q1k chr08 121 62 1910 1909 C 60 0.00 1390 reject_low 109 ALIGNMENT 129 Y12-7m11.q1k chr08 452 203 1651 1900 C 250 85.60 1390 reject_low 178 ALIGNMENT 0 Y12-7m11.q1k chr09 798 129 1687 1686 C 670 0.00 1390 reject_low 383 ALIGNMENT 0 Y12-7m11.q1k chr12 351 345 2216 7325 C 7 0.00 1390 reject_low 411 ALIGNMENT 0 Y12-7m11.q1k chr12 381 798 1076689 1076688 F 418 0.00 1390 reject_low 140 ALIGNMENT 33 Y12-7m11.q1k chr16 460 525 945962 946027 F 66 84.85 1390 reject_low 379 ALIGNMENT 0 Y12-7m11.q1k chr09 184 185 2290 2253 C 0 0.00 1390 reject_low 416,417,418,419,420,421 ALIGNMENT 0 Y12-7m11.q1k chr09 238 230 2224 2244 C 9 0.00 1390 reject_low 417 ALIGNMENT 73 Y12-7m11.q1k chr05 189 63 1481 1607 C 127 86.61 1390 reject_low 260 ALIGNMENT 245 Y12-7m11.q1k chr12 416 44 7326 7698 C 373 89.81 1390|3,0 reject_low 393 ALIGNMENT 0 Y12-7m11.q1k chr04 381 798 1530488 1530487 F 418 0.00 1390 reject_low 137 ALIGNMENT 0 Y12-7m11.q1k chr14 798 381 1575 1574 C 418 0.00 1390 reject_low 130 ALIGNMENT 193 Y12-7m11.q1k chr02 513 44 1677 2146 C 470 81.70 1390 reject_low 108 ALIGNMENT 0 Y12-7m11.q1k chr05 278 62 2040 2039 C 217 0.00 1390 reject_low 282 ALIGNMENT 49 Y12-7m11.q1k chr05 63 153 575216 575306 F 91 85.71 1390 reject_low 325 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1723 1722 C 274 0.00 1390 reject_low 183 ALIGNMENT 154 Y12-7m11.q1k chr10 524 161 1957 2320 C 364 82.42 1390 reject_low 147 ALIGNMENT 244 Y12-7m11.q1k chr10 416 63 1669 2022 C 354 90.96 1390 reject_low 74 ALIGNMENT 0 Y12-7m11.q1k chr13 459 62 2092 2091 C 398 0.00 1390 reject_low 375 ALIGNMENT 0 Y12-7m11.q1k chr09 798 489 1687 1686 C 310 0.00 1390 reject_low 38 ALIGNMENT 101 Y12-7m11.q1k chr13 521 269 1814 2066 C 253 82.21 1390 reject_low 223 ALIGNMENT 32 Y12-7m11.q1k chr10 525 470 2172 2227 C 56 87.50 1390 reject_low 382 ALIGNMENT 0 Y12-7m11.q1k chr16 226 798 946483 946482 F 573 0.00 1390 reject_low 242 ALIGNMENT 0 Y12-7m11.q1k chr04 154 798 1530477 1530476 F 645 0.00 1390 reject_low 324 ALIGNMENT 794 Y12-7m11.p1k chr12 1068 94 1066137 1067097 C 975 95.18 1549 reject_low 4 ALIGNMENT 0 Y12-7m11.q1k chr06 119 62 1262 1261 C 58 0.00 1390 reject_low 232 ALIGNMENT 64 Y12-7m11.q1k chr12 525 352 2042 2215 C 174 81.03 1390 reject_low 411 ALIGNMENT 49 Y12-7m11.q1k chr14 153 63 1585 1675 C 91 85.71 1390 reject_low 331 ALIGNMENT 0 Y12-7m11.q1k chr12 526 798 1069667 1069666 F 273 0.00 1390 reject_low 374 ALIGNMENT 41 Y12-7m11.q1k chr12 59 128 1069957 1070026 F 70 87.14 1390 reject_low 415 ALIGNMENT 132 Y12-7m11.q1k chr16 308 44 1483 1747 C 265 84.15 1390 reject_low 158 ALIGNMENT 0 Y12-7m11.q1k chr14 315 62 1999 1998 C 254 0.00 1390 reject_low 252 ALIGNMENT 245 Y12-7m11.q1k chr13 416 44 1667 2039 C 373 89.81 1390 reject_low 53 ALIGNMENT 0 Y12-7m11.q1k chr14 798 526 1934 1933 C 273 0.00 1390 reject_low 376 ALIGNMENT 196 Y12-7m11.q1k chr09 529 203 1897 2223 C 327 88.38 1390 reject_low 401 ALIGNMENT 0 Y12-7m11.q1k chr05 798 278 1466 1465 C 521 0.00 1390 reject_low 209 ALIGNMENT 0 Y12-7m11.q1k chr14 798 453 1575 1574 C 346 0.00 1390 reject_low 66 ALIGNMENT 41 Y12-7m11.q1k chr04 59 128 1530419 1530488 F 70 87.14 1390 reject_low 344 ALIGNMENT 75 Y12-7m11.q1k chr06 452 80 893 1265 C 373 74.80 1390 reject_low 279 ALIGNMENT 0 Y12-7m11.q1k chr09 202 194 2224 2244 C 9 0.00 1390 reject_low 401 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 1958 1957 C 274 0.00 1390 reject_low 147 ALIGNMENT 0 Y12-7m11.q1k chr12 181 180 1070007 1076273 F 0 0.00 1390 reject_low 403 ALIGNMENT 119 Y12-7m11.q1k chr02 525 250 1881 2156 C 276 83.33 1390 reject_low 184 ALIGNMENT 0 Y12-7m11.q1k chr16 82 798 946483 946482 F 717 0.00 1390 reject_low 392 ALIGNMENT 0 Y12-7m11.q1k chr10 798 226 1681 1680 C 573 0.00 1390 reject_low 278 ALIGNMENT 0 Y12-7m11.q1k chr07 525 798 1089322 1089321 F 274 0.00 1390 reject_low 122 ALIGNMENT 0 Y12-7m11.q1k chr08 514 798 560470 560469 F 285 0.00 1390 reject_low 387 ALIGNMENT 74 Y12-7m11.q1k chr08 189 44 1662 1807 C 146 84.25 1390 reject_low 244 ALIGNMENT 0 Y12-7m11.q1k chr04 129 798 1530488 1530487 F 670 0.00 1390 reject_low 344 ALIGNMENT 49 Y12-7m11.q1k chr02 153 63 1497 1587 C 91 85.71 1390 reject_low 323 ALIGNMENT 215 Y12-7m11.q1k chr08 44 416 560469 560841 F 373 87.13 1390 reject_low 93 ALIGNMENT 0 Y12-7m11.q1k chr09 798 514 2166 2165 C 285 0.00 1390 reject_low 420 ALIGNMENT 0 Y12-7m11.q1k chr15 525 798 1089365 1089364 F 274 0.00 1390 reject_low 336 ALIGNMENT 0 Y12-7m11.q1k chr12 522 798 1069879 1069878 F 277 0.00 1390 reject_low 234 ALIGNMENT 0 Y12-7m11.q1k chr12 798 526 7578 7577 C 273 0.00 1390 reject_low 291 ALIGNMENT 0 Y12-7m11.q1k chr13 798 522 1815 1814 C 277 0.00 1390 reject_low 223 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 1972 1971 C 274 0.00 1390 reject_low 406 ALIGNMENT 0 Y12-7m11.q1k chr14 171 62 1999 1998 C 110 0.00 1390 reject_low 125 ALIGNMENT 0 Y12-7m11.q1k chr12 798 522 7438 7437 C 277 0.00 1390 reject_low 188 ALIGNMENT 0 Y12-7m11.q1k chr09 798 514 2022 2021 C 285 0.00 1390 reject_low 418 ALIGNMENT 0 Y12-7m11.q1k chr12 798 82 1695 1694 C 717 0.00 1390 reject_low 391 ALIGNMENT 0 Y12-7m11.q1k chr13 798 525 1956 1955 C 274 0.00 1390 reject_low 318 ALIGNMENT 49 Y12-7m11.q1k chr08 410 524 560439 560553 F 115 83.48 1390 reject_low 339 ALIGNMENT 0 Y12-7m11.q1k chr08 238 62 1901 1900 C 177 0.00 1390 reject_low 240 ALIGNMENT 52 Y12-7m11.q1k chr04 410 524 1530086 1530200 F 115 84.35 1390 reject_low 334 ALIGNMENT 0 Y12-7m11.q1k chr16 798 129 1484 1483 C 670 0.00 1390 reject_low 352 ALIGNMENT 0 Y12-7m11.q1k chr04 62 315 1530064 1530063 F 254 0.00 1390 reject_low 256 ALIGNMENT 244 Y12-7m11.q1k chr09 416 63 1686 2039 C 354 90.96 1390 reject_low 73 ALIGNMENT 0 Y12-7m11.q1k chr12 279 62 7751 7750 C 218 0.00 1390 reject_low 213 ALIGNMENT 0 Y12-7m11.q1k chr06 798 345 894 893 C 454 0.00 1390 reject_low 176 ALIGNMENT 41 Y12-7m11.q1k chr07 59 128 1089325 1089394 F 70 87.14 1390 reject_low 346 ALIGNMENT 0 Y12-7m11.q1k chr15 522 798 1089542 1089541 F 277 0.00 1390 reject_low 194 ALIGNMENT 317 Y12-7m11.p1k chr13 473 1085 3887 4516 F 613 86.62 1549 reject_low 33 ALIGNMENT 0 Y12-7m11.q1k chr08 417 798 560841 560840 F 382 0.00 1390 reject_low 93 ALIGNMENT 0 Y12-7m11.q1k chr12 309 798 1076689 1076688 F 490 0.00 1390 reject_low 154 ALIGNMENT 30 Y12-7m11.q1k chr05 525 372 1901 2054 C 154 75.32 1390 reject_low 388 ALIGNMENT 113 Y12-7m11.q1k chr06 344 42 893 1195 C 303 80.20 1390 reject_low 176 ALIGNMENT 726 Y12-7m11.p1k chr14 30 1085 4518 5590 F 1056 91.19 1549 reject_low 6 ALIGNMENT 0 Y12-7m11.q1k chr06 798 129 894 893 C 670 0.00 1390 reject_low 276 ALIGNMENT 52 Y12-7m11.q1k chr15 410 524 1089251 1089365 F 115 84.35 1390 reject_low 336 ALIGNMENT 43 Y12-7m11.q1k chr12 128 63 1683 1748 C 66 89.39 1390 reject_low 341 ALIGNMENT 0 Y12-7m11.q1k chr08 798 417 1652 1651 C 382 0.00 1390 reject_low 142 ALIGNMENT 0 Y12-7m11.q1k chr08 525 798 560805 560804 F 274 0.00 1390 reject_low 50 ALIGNMENT 34 Y12-7m11.q1k chr06 525 336 1072 1261 C 190 74.74 1390 reject_low 386 ALIGNMENT 229 Y12-7m11.q1k chr15 42 452 1089243 1089653 F 411 86.62 1390 reject_low 70 ALIGNMENT 0 Y12-7m11.q1k chr12 216 217 2207 7345 C 0 0.00 1390 reject_low 410 ALIGNMENT 160 Y12-7m11.q1k chr14 380 44 1574 1910 C 337 83.68 1390 reject_low 130 ALIGNMENT 0 Y12-7m11.q1k chr16 279 62 1908 1907 C 218 0.00 1390 reject_low 216 ALIGNMENT 49 Y12-7m11.q1k chr13 153 63 1678 1768 C 91 85.71 1390 reject_low 330 ALIGNMENT 0 Y12-7m11.q1k chr15 345 798 1089653 1089652 F 454 0.00 1390 reject_low 173 ALIGNMENT 0 Y12-7m11.q1k chr13 268 62 2067 2066 C 207 0.00 1390 reject_low 223 ALIGNMENT 0 Y12-7m11.q1k chr16 171 62 1908 1907 C 110 0.00 1390 reject_low 126 ALIGNMENT 0 Y12-7m11.q1k chr15 526 798 1089402 1089401 F 273 0.00 1390 reject_low 299 ALIGNMENT 0 Y12-7m11.q1k chr05 798 309 1471 1470 C 490 0.00 1390 reject_low 198 ALIGNMENT 0 Y12-7m11.q1k chr07 190 798 1089383 1089382 F 609 0.00 1390 reject_low 307 ALIGNMENT 0 Y12-7m11.q1k chr06 798 94 893 892 C 705 0.00 1390 reject_low 337 ALIGNMENT 0 Y12-7m11.q1k chr14 798 417 1575 1574 C 382 0.00 1390 reject_low 54 ALIGNMENT 0 Y12-7m11.q1k chr08 525 798 560553 560552 F 274 0.00 1390 reject_low 339 ALIGNMENT 0 Y12-7m11.q1k chr16 409 62 1886 1885 C 348 0.00 1390 reject_low 320 ALIGNMENT 0 Y12-7m11.q1k chr05 278 798 575322 575321 F 521 0.00 1390 reject_low 200 ALIGNMENT 120 Y12-7m11.q1k chr05 208 521 574893 575206 F 314 81.21 1390 reject_low 186 ALIGNMENT 0 Y12-7m11.q1k chr14 798 226 1586 1585 C 573 0.00 1390 reject_low 268 ALIGNMENT 43 Y12-7m11.q1k chr04 446 513 1530086 1530153 F 68 89.71 1390 reject_low 356 ALIGNMENT 0 Y12-7m11.q1k chr10 798 417 1670 1669 C 382 0.00 1390 reject_low 74 ALIGNMENT 87 Y12-7m11.q1k chr12 316 513 1069602 1069799 F 198 83.33 1390 reject_low 257 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1069990 1069989 F 274 0.00 1390 reject_low 86 ALIGNMENT 0 Y12-7m11.q1k chr12 798 526 2043 2042 C 273 0.00 1390 reject_low 411 ALIGNMENT 0 Y12-7m11.q1k chr14 99 62 1999 1998 C 38 0.00 1390 reject_low 24 ALIGNMENT 170 Y12-7m11.q1k chr04 172 524 1530064 1530416 F 353 84.42 1390 reject_low 133 ALIGNMENT 0 Y12-7m11.q1k chr08 345 798 560841 560840 F 454 0.00 1390 reject_low 218 ALIGNMENT 0 Y12-7m11.q1k chr13 351 62 2092 2091 C 290 0.00 1390 reject_low 292 ALIGNMENT 0 Y12-7m11.q1k chr04 62 207 1530064 1530063 F 146 0.00 1390 reject_low 192 ALIGNMENT 0 Y12-7m11.q1k chr07 453 798 1089394 1089393 F 346 0.00 1390 reject_low 64 ALIGNMENT 0 Y12-7m11.q1k chr04 522 798 1530377 1530376 F 277 0.00 1390 reject_low 192 ALIGNMENT 0 Y12-7m11.q1k chr09 798 345 1687 1686 C 454 0.00 1390 reject_low 143 ALIGNMENT 73 Y12-7m11.q1k chr10 524 279 2065 2310 C 246 78.86 1390 reject_low 280 ALIGNMENT 56 Y12-7m11.q1k chr06 128 44 893 977 C 85 89.41 1390 reject_low 276 ALIGNMENT 241 Y12-7m11.q1k chr13 524 136 1703 2091 C 389 88.95 1390 reject_low 82 ALIGNMENT 171 Y12-7m11.q1k chr05 452 44 1470 1878 C 409 81.91 1390 reject_low 117 ALIGNMENT 292 Y12-7m11.q1k chr10 524 44 1705 2185 C 481 88.36 1390 reject_low 43 ALIGNMENT 0 Y12-7m11.q1k chr04 309 798 1530488 1530487 F 490 0.00 1390 reject_low 151 ALIGNMENT 0 Y12-7m11.q1k chr05 223 62 2059 2058 C 162 0.00 1390 reject_low 237 ALIGNMENT 0 Y12-7m11.q1k chr05 62 171 574893 574892 F 110 0.00 1390 reject_low 121 ALIGNMENT 90 Y12-7m11.q1k chr16 513 316 1710 1907 C 198 83.84 1390 reject_low 253 ALIGNMENT 238 Y12-7m11.q1k chr12 136 524 1076265 1076653 F 389 88.69 1390|9,0 reject_low 396 ALIGNMENT 0 Y12-7m11.q1k chr09 798 525 2083 2082 C 274 0.00 1390 reject_low 281 ALIGNMENT 0 Y12-7m11.q1k chr05 226 798 575306 575305 F 573 0.00 1390 reject_low 263 ALIGNMENT 0 Y12-7m11.q1k chr09 798 381 1687 1686 C 418 0.00 1390 reject_low 138 ALIGNMENT 0 Y12-7m11.q1k chr16 489 798 946494 946493 F 310 0.00 1390 reject_low 88 ALIGNMENT 206 Y12-7m11.q1k chr12 452 48 1683 2087 C 405 84.94 1390 reject_low 103 ALIGNMENT 0 Y12-7m11.q1k chr05 798 226 1482 1481 C 573 0.00 1390 reject_low 285 ALIGNMENT 82 Y12-7m11.q1k chr06 201 44 892 1049 C 158 84.81 1390 reject_low 231 ALIGNMENT 0 Y12-7m11.q1k chr16 522 798 946239 946238 F 277 0.00 1390 reject_low 226 ALIGNMENT 0 Y12-7m11.q1k chr15 453 798 1089653 1089652 F 346 0.00 1390 reject_low 70 ALIGNMENT 0 Y12-7m11.q1k chr06 798 453 894 893 C 346 0.00 1390 reject_low 279 ALIGNMENT 0 Y12-7m11.q1k chr12 351 62 7751 7750 C 290 0.00 1390 reject_low 291 ALIGNMENT 0 Y12-7m11.q1k chr07 62 279 1088970 1088969 F 218 0.00 1390 reject_low 212 ALIGNMENT 257 Y12-7m11.q1k chr09 452 48 1686 2090 C 405 89.14 1390 reject_low 48 ALIGNMENT 680 Y12-7m11.q1k chr12 100 1107 1069602 1070611 F 1008 90.08 1390 accept_tel 0 ALIGNMENT 0 Y12-7m11.q1k chr16 514 798 946051 946050 F 285 0.00 1390 reject_low 365 ALIGNMENT 94 Y12-7m11.q1k chr07 44 277 1089166 1089399 F 234 80.77 1390 reject_low 201 ALIGNMENT 0 Y12-7m11.q1k chr08 226 798 560830 560829 F 573 0.00 1390 reject_low 265 ALIGNMENT 72 Y12-7m11.q1k chr12 63 225 1076516 1076678 F 163 82.21 1390 reject_low 266 ALIGNMENT 191 Y12-7m11.q1k chr02 529 144 1769 2154 C 386 84.72 1390 reject_low 107 ALIGNMENT 193 Y12-7m11.q1k chr12 380 44 1683 2019 C 337 86.94 1390 reject_low 106 ALIGNMENT 0 Y12-7m11.q1k chr02 798 381 1487 1486 C 418 0.00 1390 reject_low 114 ALIGNMENT 41 Y12-7m11.q1k chr05 59 128 575248 575317 F 70 87.14 1390 reject_low 345 ALIGNMENT 0 Y12-7m11.q1k chr05 417 798 575317 575316 F 382 0.00 1390 reject_low 51 ALIGNMENT 0 Y12-7m11.q1k chr12 135 62 7751 7750 C 74 0.00 1390 reject_low 81 ALIGNMENT 72 Y12-7m11.q1k chr13 225 63 1678 1840 C 163 82.21 1390 reject_low 267 ALIGNMENT 0 Y12-7m11.q1k chr10 798 129 1670 1669 C 670 0.00 1390 reject_low 384 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 1739 1738 C 274 0.00 1390 reject_low 136 ALIGNMENT 0 Y12-7m11.q1k chr16 798 190 1495 1494 C 609 0.00 1390 reject_low 313 ALIGNMENT 0 Y12-7m11.q1k chr12 413 414 2190 7328 C 0 0.00 1390 reject_low 393 ALIGNMENT 0 Y12-7m11.q1k chr16 798 526 1843 1842 C 273 0.00 1390 reject_low 378 ALIGNMENT 0 Y12-7m11.q1k chr06 798 514 1049 1048 C 285 0.00 1390 reject_low 355 ALIGNMENT 0 Y12-7m11.q1k chr16 154 798 946483 946482 F 645 0.00 1390 reject_low 303 ALIGNMENT 0 Y12-7m11.q1k chr13 798 309 1668 1667 C 490 0.00 1390 reject_low 155 ALIGNMENT 98 Y12-7m11.q1k chr12 269 521 1069627 1069879 F 253 81.82 1390 reject_low 234 ALIGNMENT 98 Y12-7m11.q1k chr08 63 344 560560 560841 F 282 79.43 1390 reject_low 218 ALIGNMENT 0 Y12-7m11.q1k chr12 514 798 1076354 1076353 F 285 0.00 1390 reject_low 397 ALIGNMENT 187 Y12-7m11.q1k chr05 416 48 1470 1838 C 369 84.82 1390 reject_low 111 ALIGNMENT 775 Y12-7m11.q1k chr16 44 1096 946014 947069 F 1053 92.02 1390 reject_low 13 ALIGNMENT 0 Y12-7m11.q1k chr02 798 525 2099 2098 C 274 0.00 1390 reject_low 380 ALIGNMENT 102 Y12-7m11.q1k chr05 280 524 574893 575137 F 245 82.86 1390 reject_low 211 ALIGNMENT 0 Y12-7m11.q1k chr07 62 99 1088970 1088969 F 38 0.00 1390 reject_low 23 ALIGNMENT 0 Y12-7m11.q1k chr16 309 798 946494 946493 F 490 0.00 1390 reject_low 245 ALIGNMENT 79 Y12-7m11.q1k chr16 44 225 946302 946483 F 182 81.87 1390 reject_low 242 ALIGNMENT 0 Y12-7m11.q1k chr07 62 171 1088970 1088969 F 110 0.00 1390 reject_low 122 ALIGNMENT 0 Y12-7m11.q1k chr12 798 514 2127 2126 C 285 0.00 1390 reject_low 395 ALIGNMENT 731 Y12-7m11.p1k chr05 94 904 4586 5390 F 811 97.41 1549 reject_low 8 ALIGNMENT 0 Y12-7m11.q1k chr08 154 798 560830 560829 F 645 0.00 1390 reject_low 328 ALIGNMENT 0 Y12-7m11.q1k chr12 798 453 1684 1683 C 346 0.00 1390 reject_low 103 ALIGNMENT 0 Y12-7m11.q1k chr04 62 99 1530064 1530063 F 38 0.00 1390 reject_low 26 ALIGNMENT 0 Y12-7m11.q1k chr12 514 798 1069691 1069690 F 285 0.00 1390 reject_low 360 ALIGNMENT 0 Y12-7m11.q1k chr13 798 129 1668 1667 C 670 0.00 1390 reject_low 349 ALIGNMENT 0 Y12-7m11.q1k chr04 62 171 1530064 1530063 F 110 0.00 1390 reject_low 133 ALIGNMENT 0 Y12-7m11.q1k chr05 522 798 575170 575169 F 277 0.00 1390 reject_low 220 ALIGNMENT 43 Y12-7m11.q1k chr12 513 446 2126 2193 C 68 89.71 1390|0,4 reject_low 395 ALIGNMENT 43 Y12-7m11.q1k chr05 153 63 1481 1571 C 91 83.52 1390 reject_low 353 ALIGNMENT 0 Y12-7m11.q1k chr02 798 526 1954 1953 C 273 0.00 1390 reject_low 238 ALIGNMENT 0 Y12-7m11.q1k chr08 798 154 1663 1662 C 645 0.00 1390 reject_low 327 ALIGNMENT 0 Y12-7m11.q1k chr10 798 526 2173 2172 C 273 0.00 1390 reject_low 382 ALIGNMENT 64 Y12-7m11.q1k chr14 525 352 1825 1998 C 174 81.03 1390 reject_low 293 ALIGNMENT 308 Y12-7m11.p1k chr02 473 1085 4212 4841 F 613 86.13 1549 reject_low 34 ALIGNMENT 0 Y12-7m11.q1k chr04 525 798 1530200 1530199 F 274 0.00 1390 reject_low 334 ALIGNMENT 0 Y12-7m11.q1k chr08 309 798 560841 560840 F 490 0.00 1390 reject_low 165 ALIGNMENT 223 Y12-7m11.q1k chr12 488 44 1683 2127 C 445 84.72 1390 reject_low 92 ALIGNMENT 0 Y12-7m11.q1k chr08 62 351 560417 560416 F 290 0.00 1390 reject_low 296 ALIGNMENT 0 Y12-7m11.q1k chr08 202 62 1901 1900 C 141 0.00 1390 reject_low 178 ALIGNMENT 0 Y12-7m11.q1k chr09 268 230 2230 2244 C 39 0.00 1390 reject_low 416 ALIGNMENT 99 Y12-7m11.q1k chr06 488 120 893 1261 C 369 77.24 1390 reject_low 232 ALIGNMENT 0 Y12-7m11.q1k chr07 526 798 1089035 1089034 F 273 0.00 1390 reject_low 372 ALIGNMENT 111 Y12-7m11.q1k chr09 308 44 1686 1950 C 265 81.51 1390 reject_low 180 ALIGNMENT 0 Y12-7m11.q1k chr07 226 798 1089383 1089382 F 573 0.00 1390 reject_low 264 ALIGNMENT 102 Y12-7m11.q1k chr14 524 280 1754 1998 C 245 82.86 1390 reject_low 215 ALIGNMENT 226 Y12-7m11.q1k chr16 136 524 945962 946350 F 389 87.66 1390 reject_low 94 ALIGNMENT 0 Y12-7m11.q1k chr09 317 62 2289 2288 C 256 0.00 1390 reject_low 281 ALIGNMENT 0 Y12-7m11.q1k chr10 88 62 2321 2320 C 27 0.00 1390 reject_low 101 ALIGNMENT 0 Y12-7m11.q1k chr10 232 62 2321 2320 C 171 0.00 1390 reject_low 208 ALIGNMENT 0 Y12-7m11.q1k chr12 315 62 7751 7750 C 254 0.00 1390 reject_low 250 ALIGNMENT 0 Y12-7m11.q1k chr13 171 62 2092 2091 C 110 0.00 1390 reject_low 124 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 2080 2079 C 274 0.00 1390 reject_low 393,404 ALIGNMENT 0 Y12-7m11.q1k chr16 525 798 946206 946205 F 274 0.00 1390 reject_low 217 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1076509 1076508 F 274 0.00 1390 reject_low 408 ALIGNMENT 0 Y12-7m11.q1k chr16 525 798 946350 946349 F 274 0.00 1390 reject_low 94 ALIGNMENT 0 Y12-7m11.q1k chr06 798 514 977 976 C 285 0.00 1390 reject_low 286 ALIGNMENT 0 Y12-7m11.q1k chr12 309 315 1070027 1076264 F 7 0.00 1390 reject_low 402 ALIGNMENT 148 Y12-7m11.q1k chr09 524 269 1974 2229 C 256 88.28 1390 reject_low 416 ALIGNMENT 49 Y12-7m11.q1k chr08 128 48 1651 1731 C 81 87.65 1390 reject_low 301 ALIGNMENT 0 Y12-7m11.q1k chr05 526 798 574958 574957 F 273 0.00 1390 reject_low 371 ALIGNMENT 285 Y12-7m11.q1k chr16 42 524 945976 946458 F 483 87.78 1390 reject_low 44 ALIGNMENT 0 Y12-7m11.q1k chr16 514 798 946303 946302 F 285 0.00 1390 reject_low 116 ALIGNMENT 0 Y12-7m11.q1k chr12 526 798 1076438 1076437 F 273 0.00 1390 reject_low 413 ALIGNMENT 55 Y12-7m11.q1k chr14 189 63 1585 1711 C 127 81.89 1390 reject_low 311 ALIGNMENT 167 Y12-7m11.q1k chr08 416 130 1651 1937 C 287 87.46 1390 reject_low 142 ALIGNMENT 232 Y12-7m11.q1k chr12 452 42 7326 7736 C 411 86.86 1390|3,0 reject_low 395 ALIGNMENT 63 Y12-7m11.q1k chr02 524 423 2026 2127 C 102 89.22 1390 reject_low 288 ALIGNMENT 0 Y12-7m11.q1k chr05 798 129 1471 1470 C 670 0.00 1390 reject_low 340 ALIGNMENT 47 Y12-7m11.q1k chr06 513 300 1048 1261 C 214 76.17 1390 reject_low 355 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1069954 1069953 F 274 0.00 1390 reject_low 134 ALIGNMENT 0 Y12-7m11.q1k chr16 62 409 945984 945983 F 348 0.00 1390 reject_low 321 ALIGNMENT 0 Y12-7m11.q1k chr05 187 62 2059 2058 C 126 0.00 1390 reject_low 183 ALIGNMENT 0 Y12-7m11.q1k chr05 62 207 574893 574892 F 146 0.00 1390 reject_low 186 ALIGNMENT 0 Y12-7m11.q1k chr02 798 514 2074 2073 C 285 0.00 1390 reject_low 368 ALIGNMENT 94 Y12-7m11.q1k chr13 277 44 1662 1895 C 234 80.77 1390 reject_low 204 ALIGNMENT 0 Y12-7m11.q1k chr12 278 798 1076694 1076693 F 521 0.00 1390 reject_low 203 ALIGNMENT 0 Y12-7m11.q1k chr04 526 798 1530129 1530128 F 273 0.00 1390 reject_low 370 ALIGNMENT 737 Y12-7m11.q1k chr02 1111 44 897 1966 C 1068 90.64 1390 reject_low 14 ALIGNMENT 31 Y12-7m11.q1k chr10 128 63 1669 1734 C 66 83.33 1390 reject_low 384 ALIGNMENT 232 Y12-7m11.q1k chr05 42 452 574907 575317 F 411 86.86 1390 reject_low 63 ALIGNMENT 0 Y12-7m11.q1k chr12 345 798 1076689 1076688 F 454 0.00 1390 reject_low 170 ALIGNMENT 122 Y12-7m11.q1k chr05 48 344 575021 575317 F 297 81.48 1390 reject_low 168 ALIGNMENT 0 Y12-7m11.q1k chr05 62 315 574893 574892 F 254 0.00 1390 reject_low 248 ALIGNMENT 0 Y12-7m11.q1k chr08 62 99 560417 560416 F 38 0.00 1390 reject_low 15 ALIGNMENT 0 Y12-7m11.q1k chr15 62 315 1089229 1089228 F 254 0.00 1390 reject_low 258 ALIGNMENT 0 Y12-7m11.q1k chr16 798 525 1664 1663 C 274 0.00 1390 reject_low 216 ALIGNMENT 0 Y12-7m11.q1k chr12 99 62 7751 7750 C 38 0.00 1390 reject_low 11 ALIGNMENT 0 Y12-7m11.q1k chr04 62 279 1530064 1530063 F 218 0.00 1390 reject_low 228 ALIGNMENT 0 Y12-7m11.q1k chr06 798 525 1002 1001 C 274 0.00 1390 reject_low 300 ALIGNMENT 241 Y12-7m11.q1k chr07 136 524 1088970 1089358 F 389 88.95 1390 reject_low 80 ALIGNMENT 0 Y12-7m11.q1k chr15 514 798 1089426 1089425 F 285 0.00 1390 reject_low 258 ALIGNMENT 0 Y12-7m11.q1k chr07 417 798 1089394 1089393 F 382 0.00 1390 reject_low 52 ALIGNMENT 0 Y12-7m11.q1k chr15 226 798 1089642 1089641 F 573 0.00 1390 reject_low 269 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 1720 1719 C 274 0.00 1390 reject_low 45 ALIGNMENT 55 Y12-7m11.q1k chr04 63 189 1530351 1530477 F 127 81.89 1390 reject_low 305 ALIGNMENT 725 Y12-7m11.q1k chr10 1111 44 1080 2149 C 1068 90.17 1390 reject_low 17 ALIGNMENT 55 Y12-7m11.q1k chr05 410 524 574915 575029 F 115 85.22 1390 reject_low 315 ALIGNMENT 0 Y12-7m11.p1k chr05 62 93 4586 4585 F 32 0.00 1549 reject_low 8 ALIGNMENT 41 Y12-7m11.q1k chr02 128 59 1486 1555 C 70 87.14 1390 reject_low 343 ALIGNMENT 122 Y12-7m11.q1k chr15 48 344 1089357 1089653 F 297 81.48 1390 reject_low 173 ALIGNMENT 0 Y12-7m11.q1k chr12 522 798 1076542 1076541 F 277 0.00 1390 reject_low 409 ALIGNMENT 56 Y12-7m11.q1k chr10 153 48 1680 1785 C 106 84.91 1390 reject_low 284 ALIGNMENT 123 Y12-7m11.q1k chr12 521 208 1902 2215 C 314 81.53 1390|0,9 reject_low 410 ALIGNMENT 0 Y12-7m11.q1k chr16 798 514 1711 1710 C 285 0.00 1390 reject_low 253 ALIGNMENT 0 Y12-7m11.q1k chr12 798 489 1684 1683 C 310 0.00 1390 reject_low 92 ALIGNMENT 99 Y12-7m11.q1k chr05 277 63 1465 1679 C 215 82.79 1390 reject_low 209 ALIGNMENT 64 Y12-7m11.q1k chr13 525 352 1918 2091 C 174 81.03 1390 reject_low 292 ALIGNMENT 0 Y12-7m11.q1k chr14 798 525 1863 1862 C 274 0.00 1390 reject_low 319 ALIGNMENT 0 Y12-7m11.q1k chr08 798 381 1652 1651 C 418 0.00 1390 reject_low 109 ALIGNMENT 0 Y12-7m11.q1k chr12 278 279 1070032 1076264 F 2 0.00 1390 reject_low 408 ALIGNMENT 0 Y12-7m11.q1k chr15 62 279 1089229 1089228 F 218 0.00 1390 reject_low 230 ALIGNMENT 0 Y12-7m11.q1k chr05 522 798 575206 575205 F 277 0.00 1390 reject_low 186 ALIGNMENT 0 Y12-7m11.q1k chr05 798 489 1471 1470 C 310 0.00 1390 reject_low 47 ALIGNMENT 245 Y12-7m11.q1k chr05 44 416 574945 575317 F 373 89.81 1390 reject_low 51 ALIGNMENT 49 Y12-7m11.q1k chr12 153 63 7337 7427 C 91 85.71 1390|9,0 reject_low 398 ALIGNMENT 0 Y12-7m11.q1k chr05 798 525 1651 1650 C 274 0.00 1390 reject_low 150 ALIGNMENT 170 Y12-7m11.q1k chr12 172 524 1069602 1069954 F 353 84.42 1390 reject_low 134 ALIGNMENT 72 Y12-7m11.q1k chr04 63 225 1530315 1530477 F 163 82.21 1390 reject_low 262 ALIGNMENT 0 Y12-7m11.q1k chr16 278 798 946499 946498 F 521 0.00 1390 reject_low 175 ALIGNMENT 0 Y12-7m11.q1k chr12 217 216 1070007 1076273 F 0 0.00 1390 reject_low 412 ALIGNMENT 122 Y12-7m11.q1k chr06 308 42 893 1159 C 267 82.77 1390 reject_low 161 ALIGNMENT 206 Y12-7m11.q1k chr08 380 122 1651 1909 C 259 94.59 1390 reject_low 109 ALIGNMENT 70 Y12-7m11.q1k chr12 189 63 1694 1820 C 127 85.83 1390 reject_low 271 ALIGNMENT 0 Y12-7m11.q1k chr02 798 522 1598 1597 C 277 0.00 1390 reject_low 75 ALIGNMENT 102 Y12-7m11.q1k chr02 524 286 1918 2156 C 239 83.26 1390 reject_low 210 ALIGNMENT 0 Y12-7m11.q1k chr16 453 798 946494 946493 F 346 0.00 1390 reject_low 100 ALIGNMENT 0 Y12-7m11.q1k chr12 514 798 1069799 1069798 F 285 0.00 1390 reject_low 257 ALIGNMENT 0 Y12-7m11.q1k chr10 798 345 1670 1669 C 454 0.00 1390 reject_low 144 ALIGNMENT 208 Y12-7m11.q1k chr08 42 452 560431 560841 F 411 84.91 1390 reject_low 95 ALIGNMENT 0 Y12-7m11.q1k chr12 798 522 1903 1902 C 277 0.00 1390 reject_low 410 ALIGNMENT 0 Y12-7m11.q1k chr12 62 445 1069624 1069623 F 384 0.00 1390 reject_low 360 ALIGNMENT 160 Y12-7m11.q1k chr16 380 44 1483 1819 C 337 83.68 1390 reject_low 131 ALIGNMENT 120 Y12-7m11.q1k chr13 521 208 1778 2091 C 314 81.21 1390 reject_low 189 ALIGNMENT 70 Y12-7m11.q1k chr09 524 318 2082 2288 C 207 80.19 1390 reject_low 281 ALIGNMENT 0 Y12-7m11.q1k chr09 798 226 1698 1697 C 573 0.00 1390 reject_low 277 ALIGNMENT 0 Y12-7m11.q1k chr09 798 278 1682 1681 C 521 0.00 1390 reject_low 246 ALIGNMENT 722 Y12-7m11.p1k chr16 30 1078 4427 5492 F 1049 91.23 1549 reject_low 9 ALIGNMENT 245 Y12-7m11.q1k chr07 44 416 1089022 1089394 F 373 89.81 1390 reject_low 52 ALIGNMENT 0 Y12-7m11.q1k chr08 469 62 1922 1921 C 408 0.00 1390 reject_low 381 ALIGNMENT 102 Y12-7m11.q1k chr16 280 524 945962 946206 F 245 82.86 1390 reject_low 217 ALIGNMENT 0 Y12-7m11.q1k chr08 278 798 560846 560845 F 521 0.00 1390 reject_low 202 ALIGNMENT 50 Y12-7m11.q1k chr12 153 48 1694 1799 C 106 83.02 1390 reject_low 302 ALIGNMENT 0 Y12-7m11.q1k chr02 798 278 1482 1481 C 521 0.00 1390 reject_low 182 ALIGNMENT 84 Y12-7m11.q1k chr02 225 54 1497 1668 C 172 83.72 1390 reject_low 239 ALIGNMENT 0 Y12-7m11.q1k chr12 62 99 1076265 1076264 F 38 0.00 1390 reject_low 20 ALIGNMENT 0 Y12-7m11.q1k chr04 226 798 1530477 1530476 F 573 0.00 1390 reject_low 262 ALIGNMENT 142 Y12-7m11.q1k chr05 524 152 1686 2058 C 373 80.97 1390 reject_low 159 ALIGNMENT 115 Y12-7m11.q1k chr10 513 197 2004 2320 C 317 80.44 1390 reject_low 196 ALIGNMENT 0 Y12-7m11.q1k chr09 798 154 1698 1697 C 645 0.00 1390 reject_low 283 ALIGNMENT 292 Y12-7m11.q1k chr09 524 44 1722 2202 C 481 88.36 1390 reject_low 42 ALIGNMENT 0 Y12-7m11.q1k chr08 798 82 1663 1662 C 717 0.00 1390 reject_low 390 ALIGNMENT 87 Y12-7m11.q1k chr04 316 513 1530064 1530261 F 198 83.33 1390 reject_low 256 ALIGNMENT 20 Y12-7m11.q1k chr08 81 59 1662 1684 C 23 95.65 1390 reject_low 390 ALIGNMENT 0 Y12-7m11.q1k chr10 798 525 1850 1849 C 274 0.00 1390 reject_low 78 ALIGNMENT 64 Y12-7m11.q1k chr10 189 48 1680 1821 C 142 82.39 1390 reject_low 275 ALIGNMENT 0 Y12-7m11.q1k chr12 798 514 7662 7661 C 285 0.00 1390 reject_low 359 ALIGNMENT 0 Y12-7m11.q1k chr16 351 62 1908 1907 C 290 0.00 1390 reject_low 294 ALIGNMENT 0 Y12-7m11.q1k chr15 525 798 1089617 1089616 F 274 0.00 1390 reject_low 87 ALIGNMENT 220 Y12-7m11.q1k chr09 524 167 1866 2223 C 358 88.83 1390 reject_low 99 ALIGNMENT 39 Y12-7m11.q1k chr02 513 430 2073 2156 C 84 84.52 1390 reject_low 368 ALIGNMENT 0 Y12-7m11.q1k chr12 526 798 1076330 1076329 F 273 0.00 1390 reject_low 415 ALIGNMENT 33 Y12-7m11.q1k chr05 460 525 574893 574958 F 66 84.85 1390 reject_low 371 ALIGNMENT 0 Y12-7m11.q1k chr12 409 62 7729 7728 C 348 0.00 1390 reject_low 317 ALIGNMENT 0 Y12-7m11.q1k chr09 166 62 2224 2223 C 105 0.00 1390 reject_low 99 ALIGNMENT 0 Y12-7m11.q1k chr12 453 798 1076689 1076688 F 346 0.00 1390 reject_low 69 ALIGNMENT 101 Y12-7m11.q1k chr16 521 269 1630 1882 C 253 82.21 1390 reject_low 225 ALIGNMENT 271 Y12-7m11.q1k chr05 488 44 1470 1914 C 445 88.31 1390 reject_low 47 ALIGNMENT 241 Y12-7m11.q1k chr12 524 136 7362 7750 C 389 88.95 1390 reject_low 81 ALIGNMENT 0 Y12-7m11.q1k chr05 514 798 574982 574981 F 285 0.00 1390 reject_low 357 ALIGNMENT 72 Y12-7m11.q1k chr12 63 225 1069853 1070015 F 163 82.21 1390|0,9 reject_low 412 ALIGNMENT 0 Y12-7m11.q1k chr14 445 62 1977 1976 C 384 0.00 1390 reject_low 362 ALIGNMENT 0 Y12-7m11.q1k chr08 522 798 560730 560729 F 277 0.00 1390 reject_low 166 ALIGNMENT 0 Y12-7m11.q1k chr04 522 798 1530341 1530340 F 277 0.00 1390 reject_low 233 ALIGNMENT 43 Y12-7m11.q1k chr12 446 513 1076287 1076354 F 68 89.71 1390|4,0 reject_low 397 ALIGNMENT 0 Y12-7m11.p1k chr13 62 472 3887 3886 F 411 0.00 1549 reject_low 33 ALIGNMENT 230 Y12-7m11.q1k chr10 524 49 1849 2324 C 476 84.24 1390 reject_low 78 ALIGNMENT 0 Y12-7m11.q1k chr12 525 798 1076653 1076652 F 274 0.00 1390 reject_low 396 ALIGNMENT 0 Y12-7m11.q1k chr16 798 525 1556 1555 C 274 0.00 1390 reject_low 126 ALIGNMENT 0 Y12-7m11.q1k chr07 309 798 1089394 1089393 F 490 0.00 1390 reject_low 153 ALIGNMENT 92 Y12-7m11.q1k chr02 525 322 1953 2156 C 204 83.82 1390 reject_low 238 ALIGNMENT 72 Y12-7m11.q1k chr07 63 225 1089221 1089383 F 163 82.21 1390 reject_low 264 ALIGNMENT 0 Y12-7m11.q1k chr16 445 62 1886 1885 C 384 0.00 1390 reject_low 364 ALIGNMENT 269 Y12-7m11.q1k chr05 524 33 1578 2069 C 492 86.18 1390 reject_low 36 ALIGNMENT 0 Y12-7m11.q1k chr14 798 278 1570 1569 C 521 0.00 1390 reject_low 205 ALIGNMENT 0 Y12-7m11.q1k chr12 268 62 7726 7725 C 207 0.00 1390 reject_low 222 ALIGNMENT 157 Y12-7m11.q1k chr12 44 380 1076353 1076689 F 337 83.38 1390 reject_low 140 ALIGNMENT 0 Y12-7m11.q1k chr02 285 62 2157 2156 C 224 0.00 1390 reject_low 210 ALIGNMENT 0 Y12-7m11.q1k chr12 798 525 7399 7398 C 274 0.00 1390 reject_low 123 ALIGNMENT 61 Y12-7m11.q1k chr12 352 525 1076265 1076438 F 174 80.46 1390 reject_low 413 ALIGNMENT 909 Y12-7m13.q1k chr04 1069 36 166983 168030 C 1034 97.00 1305 accept 0 ALIGNMENT 914 Y12-7m13.p1k chr04 20 1099 162876 163967 F 1080 96.11 1431 accept 0 ALIGNMENT 973 Y12-7m14.p1k chr12 18 1197 452732 453933 F 1180 95.08 1437 accept 0 ALIGNMENT 972 Y12-7m14.p1k chr12 18 1114 461869 462979 F 1097 96.99 1437 reject_low 1 ALIGNMENT 908 Y12-7m15.q1k chr04 1129 40 500002 501102 C 1090 95.87 1302 accept 0 ALIGNMENT 940 Y12-7m15.p1k chr04 21 1157 495195 496356 F 1137 96.04 1394 accept 0 ALIGNMENT 911 Y12-7m16.q1k chr15 1069 32 923496 924549 C 1038 96.72 1274 accept 0 ALIGNMENT 974 Y12-7m16.p1k chr15 19 1151 918123 919267 F 1133 96.29 1442 accept 0 ALIGNMENT 1037 Y12-7m17.p1k chr09 1200 18 188917 190108 C 1183 97.13 1426 accept_chi 0 ALIGNMENT 565 Y12-7m17.q1k chr16 39 758 122067 122788 F 720 93.89 1247 accept_chi 1 ALIGNMENT 950 Y12-7m18.q1k chr08 1204 41 434792 435966 C 1164 95.19 1293 accept 0 ALIGNMENT 903 Y12-7m18.p1k chr08 25 1099 431286 432368 F 1075 96.00 1423 accept 0 ALIGNMENT 329 Y12-7m19.p1k chr12 373 22 370503 370855 C 352 98.01 1649 accept 0 ALIGNMENT 844 Y12-7m19.q1k chr12 40 961 366580 367507 F 922 98.26 1254 accept 0 ALIGNMENT 904 Y12-7m20.q1k chr14 1068 28 243718 244771 C 1041 96.93 1267 accept 0 ALIGNMENT 1007 Y12-7m20.p1k chr14 18 1172 240164 241319 F 1155 96.54 1484 accept 0 ALIGNMENT 874 Y12-7m21.p1k chr02 14 1038 744538 745576 F 1025 95.90 1318 accept 0 ALIGNMENT 845 Y12-7m21.q1k chr02 1082 44 748357 749398 C 1039 93.94 1196 accept 0 ALIGNMENT 1008 Y12-7m22.p1k chr15 1308 25 372132 373430 C 1284 94.24 1411 accept 0 ALIGNMENT 974 Y12-7m22.q1k chr15 36 1183 368489 369646 F 1148 96.52 1270 accept 0 ALIGNMENT 241 Y12-7m23.p1k chr12 23 274 490291 490543 F 252 98.81 1361 reject_low 2 ALIGNMENT 944 Y12-7m23.q1k chr12 1112 36 456974 458070 C 1077 96.75 1195 accept 0 ALIGNMENT 944 Y12-7m23.q1k chr12 1112 36 466111 467207 C 1077 96.75 1195 accept 1 ALIGNMENT 1041 Y12-7m23.p1k chr12 23 1186 452323 453497 F 1164 96.91 1361 accept 0 ALIGNMENT 0 Y12-7m23.p1k chr12 275 923 490543 490542 F 649 0.00 1361 reject_low 2 ALIGNMENT 1041 Y12-7m23.p1k chr12 23 1186 461460 462634 F 1164 96.91 1361 accept 1 ALIGNMENT 104 Y12-7m24.q1k chr16 245 31 460128 460344 C 215 83.72 1314 reject_low 1 ALIGNMENT 230 Y12-7m24.q1k chr15 369 1039 368838 369500 F 671 80.18 1314 accept 0 ALIGNMENT 41 Y12-7n01.q1k chr06 252 93 137906 138065 C 160 76.88 1429 reject_low 37 ALIGNMENT 721 Y12-7n01.p1k chr04 971 28 649567 650499 C 944 94.17 1471 reject_low 17 ALIGNMENT 712 Y12-7n01.p1k chr02 38 971 260500 261421 F 934 94.11 1471 ambiguous_trans 1 ALIGNMENT 718 Y12-7n01.p1k chr13 28 971 185083 186015 F 944 94.07 1471 ambiguous_trans 5 ALIGNMENT 727 Y12-7n01.p1k chr04 28 971 1207609 1208541 F 944 94.39 1471 reject_low 13 ALIGNMENT 282 Y12-7n01.q1k chr02 694 39 226192 226835 C 656 82.01 1429 reject_low 24 ALIGNMENT 28 Y12-7n01.q1k chr16 93 133 850353 850392 F 41 95.12 1429 reject_low 39 ALIGNMENT 727 Y12-7n01.p1k chr16 971 28 854699 855631 C 944 94.39 1471 ambiguous_trans 7 ALIGNMENT 107 Y12-7n01.q1k chr13 682 39 201498 202135 C 644 73.29 1429 reject_low 11 ALIGNMENT 262 Y12-7n01.q1k chr14 39 669 96730 97351 F 631 80.98 1429 reject_low 26 ALIGNMENT 279 Y12-7n01.q1k chr15 682 39 599982 600614 C 644 81.99 1429 ambiguous_trans 2 ALIGNMENT 101 Y12-7n01.q1k chr16 250 39 844408 844625 C 212 83.96 1429 reject_low 33 ALIGNMENT 715 Y12-7n01.p1k chr04 971 28 990789 991721 C 944 93.96 1471 reject_low 21 ALIGNMENT 224 Y12-7n01.q1k chr12 39 669 215201 215828 F 631 79.08 1429 ambiguous_trans_ua 8 ALIGNMENT 727 Y12-7n01.p1k chr05 971 28 447466 448398 C 944 94.39 1471 reject_low 14 ALIGNMENT 220 Y12-7n01.q1k chr16 682 39 849578 850216 C 644 79.04 1429 ambiguous_trans 10 ALIGNMENT 130 Y12-7n01.q1k chr02 250 39 221040 221251 C 212 88.21 1429 reject_low 27 ALIGNMENT 280 Y12-7n01.q1k chr07 39 694 817518 818161 F 656 81.71 1429 ambiguous_trans 0 ALIGNMENT 93 Y12-7n01.q1k chr04 524 93 986523 986949 C 432 73.84 1429 reject_low 30 ALIGNMENT 721 Y12-7n01.p1k chr07 971 28 565917 566849 C 944 94.17 1471 reject_low 18 ALIGNMENT 718 Y12-7n01.p1k chr08 971 28 547678 548610 C 944 94.07 1471 ambiguous_trans 6 ALIGNMENT 718 Y12-7n01.p1k chr12 971 28 219155 220087 C 944 94.07 1471 ambiguous_trans_ua 8 ALIGNMENT 39 Y12-7n01.q1k chr16 93 250 810401 810558 F 158 76.58 1429 reject_low 38 ALIGNMENT 718 Y12-7n01.p1k chr07 971 28 821466 822398 C 944 94.07 1471 ambiguous_trans 0 ALIGNMENT 460 Y12-7n01.p1k chr02 28 971 221955 222887 F 944 84.96 1471 reject_low 24 ALIGNMENT 238 Y12-7n01.q1k chr10 682 39 483128 483766 C 644 79.97 1429 ambiguous_trans_ua 4 ALIGNMENT 107 Y12-7n01.q1k chr12 39 593 476095 476648 F 555 73.51 1429 reject_low 12 ALIGNMENT 89 Y12-7n01.q1k chr06 247 86 137658 137814 C 162 87.65 1429 reject_low 36 ALIGNMENT 238 Y12-7n01.q1k chr07 682 39 540931 541569 C 644 79.97 1429 ambiguous_trans 3 ALIGNMENT 224 Y12-7n01.q1k chr13 39 669 372816 373443 F 631 79.08 1429 ambiguous_trans 9 ALIGNMENT 712 Y12-7n01.p1k chr16 38 971 845338 846259 F 934 94.11 1471 ambiguous_trans 10 ALIGNMENT 93 Y12-7n01.q1k chr06 524 93 143266 143692 C 432 73.84 1429 reject_low 31 ALIGNMENT 727 Y12-7n01.p1k chr10 28 971 473296 474228 F 944 94.39 1471 ambiguous_trans_ua 4 ALIGNMENT 247 Y12-7n01.q1k chr08 39 669 543730 544351 F 631 80.19 1429 ambiguous_trans 6 ALIGNMENT 715 Y12-7n01.p1k chr10 28 971 478880 479812 F 944 93.96 1471 reject_low 22 ALIGNMENT 718 Y12-7n01.p1k chr13 971 28 376770 377702 C 944 94.07 1471 ambiguous_trans 9 ALIGNMENT 92 Y12-7n01.q1k chr10 86 227 354618 354759 F 142 89.44 1429 reject_low 35 ALIGNMENT 712 Y12-7n01.p1k chr15 38 971 595745 596666 F 934 94.11 1471 ambiguous_trans 2 ALIGNMENT 246 Y12-7n01.q1k chr13 682 39 189331 189963 C 644 80.28 1429 ambiguous_trans 5 ALIGNMENT 280 Y12-7n01.q1k chr13 39 694 357124 357767 F 656 81.71 1429 reject_low 25 ALIGNMENT 715 Y12-7n01.p1k chr16 971 28 808711 809643 C 944 93.96 1471 reject_low 23 ALIGNMENT 124 Y12-7n01.q1k chr07 250 39 401962 402173 C 212 87.26 1429 reject_low 29 ALIGNMENT 101 Y12-7n01.q1k chr16 39 250 856333 856550 F 212 83.96 1429 reject_low 34 ALIGNMENT 727 Y12-7n01.p1k chr07 28 971 536683 537615 F 944 94.39 1471 ambiguous_trans 3 ALIGNMENT 718 Y12-7n01.p1k chr05 971 28 496565 497497 C 944 94.07 1471 reject_low 19 ALIGNMENT 279 Y12-7n01.q1k chr02 682 39 264740 265372 C 644 81.99 1429 ambiguous_trans 1 ALIGNMENT 724 Y12-7n01.p1k chr15 28 971 118621 119553 F 944 94.28 1471 reject_low 16 ALIGNMENT 727 Y12-7n01.p1k chr12 28 971 594062 594994 F 944 94.39 1471 reject_low 15 ALIGNMENT 457 Y12-7n01.p1k chr13 971 28 361072 362004 C 944 84.85 1471 reject_low 25 ALIGNMENT 715 Y12-7n01.p1k chr01 971 28 164313 165245 C 944 93.96 1471 reject_low 20 ALIGNMENT 727 Y12-7n01.p1k chr12 971 28 480048 480980 C 944 94.39 1471 reject_low 12 ALIGNMENT 221 Y12-7n01.q1k chr16 39 669 850745 851372 F 631 78.92 1429 ambiguous_trans 7 ALIGNMENT 124 Y12-7n01.q1k chr03 39 250 124251 124462 F 212 87.26 1429 reject_low 28 ALIGNMENT 118 Y12-7n01.q1k chr03 86 250 142913 143077 F 165 91.52 1429 reject_low 32 ALIGNMENT 727 Y12-7n01.p1k chr13 28 971 197250 198182 F 944 94.39 1471 reject_low 11 ALIGNMENT 0 Y12-7n02.p1k chr12 62 286 489348 489347 F 225 0.00 1245 reject_low 3 ALIGNMENT 119 Y12-7n02.p1k chr12 287 405 482044 482162 F 119 100.00 1245 reject_low 5 ALIGNMENT 128 Y12-7n02.p1k chr12 287 420 489348 489481 F 134 98.51 1245 reject_low 3 ALIGNMENT 119 Y12-7n02.p1k chr12 287 405 485696 485814 F 119 100.00 1245 reject_low 6 ALIGNMENT 632 Y12-7n02.p1k chr12 1 800 459388 460202 F 800 94.88 1245 accept 0 ALIGNMENT 0 Y12-7n02.p1k chr12 406 556 482162 482161 F 151 0.00 1245 reject_low 5 ALIGNMENT 0 Y12-7n02.p1k chr12 62 286 485696 485695 F 225 0.00 1245 reject_low 6 ALIGNMENT 928 Y12-7n02.q1k chr12 1086 26 463809 464873 C 1061 96.70 1291 accept 0 ALIGNMENT 928 Y12-7n02.q1k chr12 1086 26 454672 455736 C 1061 96.70 1291 reject_low 1 ALIGNMENT 0 Y12-7n02.p1k chr12 406 556 472582 472581 F 151 0.00 1245 reject_low 4 ALIGNMENT 0 Y12-7n02.p1k chr12 421 556 489481 489480 F 136 0.00 1245 reject_low 3 ALIGNMENT 0 Y12-7n02.p1k chr12 406 556 468930 468929 F 151 0.00 1245 reject_low 2 ALIGNMENT 0 Y12-7n02.p1k chr12 62 286 482044 482043 F 225 0.00 1245 reject_low 5 ALIGNMENT 119 Y12-7n02.p1k chr12 287 405 472464 472582 F 119 100.00 1245 reject_low 4 ALIGNMENT 0 Y12-7n02.p1k chr12 62 286 472464 472463 F 225 0.00 1245 reject_low 4 ALIGNMENT 0 Y12-7n02.p1k chr12 406 556 485814 485813 F 151 0.00 1245 reject_low 6 ALIGNMENT 392 Y12-7n02.p1k chr12 1 405 468525 468930 F 405 99.75 1245 reject_low 2 ALIGNMENT 0 Y12-7n03.p1k vc_7 62 124 5171 5170 F 63 0.00 1448 reject_low 1 ALIGNMENT 770 Y12-7n03.p1k vc_7 125 1118 5171 6152 F 994 93.76 1448 reject_low 1 ALIGNMENT 938 Y12-7n03.q1k chr15 1196 18 726389 727570 C 1179 95.00 1402 accept 0 ALIGNMENT 865 Y12-7n03.p1k chr15 17 1102 721516 722592 F 1086 94.48 1448 accept 0 ALIGNMENT 391 Y12-7n04.p1k chr11 23 627 654215 654813 F 605 89.75 1646 accept 0 ALIGNMENT 708 Y12-7n04.q1k chr11 1008 43 656725 657685 C 966 92.86 1425 accept 0 ALIGNMENT 319 Y12-7n05.q1k chr14 31 433 670314 670716 F 403 94.54 1496 accept 0 ALIGNMENT 1013 Y12-7n06.p1k chr04 1157 24 263446 264579 C 1134 97.44 1433 accept 0 ALIGNMENT 986 Y12-7n06.q1k chr04 28 1160 258891 260037 F 1133 96.65 1305 accept 0 ALIGNMENT 1048 Y12-7n07.p1k chr12 1315 23 464513 465804 C 1293 94.51 1525 accept 0 ALIGNMENT 293 Y12-7n07.q1k chr12 740 1162 489754 490191 F 423 90.54 1342 reject_low 2 ALIGNMENT 627 Y12-7n07.q1k chr12 370 1162 451419 452223 F 793 94.33 1342 reject_low 1 ALIGNMENT 896 Y12-7n07.q1k chr12 35 1162 460209 461360 F 1128 94.50 1342 accept 0 ALIGNMENT 0 Y12-7n07.q1k chr12 62 369 451419 451418 F 308 0.00 1342 reject_low 1 ALIGNMENT 1033 Y12-7n07.p1k chr12 1166 23 455528 456667 C 1144 97.47 1525 reject_low 1 ALIGNMENT 0 Y12-7n07.q1k chr12 62 739 489754 489753 F 678 0.00 1342 reject_low 2 ALIGNMENT 853 Y12-7n08.p1k chr07 1041 27 939441 940468 C 1015 96.06 1390 accept 0 ALIGNMENT 854 Y12-7n08.q1k chr07 36 1032 937433 938450 F 997 96.49 1294 accept 0 ALIGNMENT 587 Y12-7n09.q1k chr16 1065 33 97381 98424 C 1033 87.03 1374 reject_low 1 ALIGNMENT 745 Y12-7n09.q1k chr13 32 1012 632554 633534 F 981 92.97 1374 accept 0 ALIGNMENT 395 Y12-7n09.p1k chr13 632 16 636980 637591 C 617 89.47 1477 accept 0 ALIGNMENT 961 Y12-7n10.q1k chr02 39 1137 469344 470444 F 1099 96.63 1353 accept 0 ALIGNMENT 924 Y12-7n10.p1k chr02 1121 24 472128 473242 C 1098 95.63 1434 accept 0 ALIGNMENT 935 Y12-7n11.q1k chr04 1160 36 345195 346327 C 1125 95.38 1368 accept 0 ALIGNMENT 929 Y12-7n11.p1k chr04 21 1172 341907 343067 F 1152 94.70 1490 accept 0 ALIGNMENT 988 Y12-7n12.p1k chr02 1229 20 417397 418621 C 1210 95.70 1469 accept_chi 0 ALIGNMENT 961 Y12-7n12.q1k chr16 1116 38 342707 343794 C 1079 97.13 1333 accept_chi 1 ALIGNMENT 0 Y12-7n13.p1k chr05 371 760 498417 498416 F 390 0.00 1496 reject_low 9 ALIGNMENT 631 Y12-7n13.p1k chr10 370 1204 424728 425570 F 835 93.05 1496 accept 0 ALIGNMENT 84 Y12-7n13.p1k chr07 241 55 817206 817387 C 187 85.56 1496 reject_low 22 ALIGNMENT 0 Y12-7n13.p1k chr03 760 315 169626 169625 C 446 0.00 1496 reject_low 23 ALIGNMENT 317 Y12-7n13.p1k chr04 369 32 1095762 1096099 C 338 100.00 1496 reject_low 5 ALIGNMENT 296 Y12-7n13.p1k chr10 369 32 483549 483886 C 338 97.93 1496 reject_low 14 ALIGNMENT 0 Y12-7n13.p1k chr03 760 370 169203 169202 C 391 0.00 1496 reject_low 10 ALIGNMENT 317 Y12-7n13.p1k chr12 32 369 215081 215418 F 338 100.00 1496 reject_low 6 ALIGNMENT 317 Y12-7n13.p1k chr16 369 32 844408 844745 C 338 100.00 1496 reject_low 7 ALIGNMENT 301 Y12-7n13.p1k chr16 47 369 856228 856550 F 323 100.00 1496 reject_low 15 ALIGNMENT 317 Y12-7n13.p1k chr16 369 32 849999 850336 C 338 100.00 1496 reject_low 8 ALIGNMENT 0 Y12-7n13.p1k chr10 62 369 424728 424727 F 308 0.00 1496 accept 0 ALIGNMENT 297 Y12-7n13.p1k chr10 370 32 472376 472714 C 339 97.94 1496 reject_low 12 ALIGNMENT 318 Y12-7n13.p1k chr13 31 369 372695 373033 F 339 100.00 1496 reject_low 4 ALIGNMENT 296 Y12-7n13.p1k chr07 369 32 541352 541689 C 338 97.93 1496 reject_low 13 ALIGNMENT 0 Y12-7n13.p1k chr13 370 760 373033 373032 F 391 0.00 1496 reject_low 4 ALIGNMENT 0 Y12-7n13.p1k chr16 760 370 844409 844408 C 391 0.00 1496 reject_low 7 ALIGNMENT 21 Y12-7n13.p1k chr03 314 212 169625 169724 C 103 77.67 1496 reject_low 23 ALIGNMENT 312 Y12-7n13.p1k chr03 369 31 169202 169540 C 339 99.41 1496 reject_low 10 ALIGNMENT 314 Y12-7n13.p1k chr15 372 32 117699 118039 C 341 99.41 1496 reject_low 3 ALIGNMENT 0 Y12-7n13.p1k chr08 370 760 543941 543940 F 391 0.00 1496 reject_low 18 ALIGNMENT 0 Y12-7n13.p1k chr12 370 760 221006 221005 F 391 0.00 1496 reject_low 11 ALIGNMENT 931 Y12-7n13.q1k chr10 1148 39 427403 428530 C 1110 96.58 1316 accept 0 ALIGNMENT 0 Y12-7n13.p1k chr01 371 760 166164 166163 F 390 0.00 1496 reject_low 20 ALIGNMENT 320 Y12-7n13.p1k chr13 32 372 378284 378624 F 341 100.00 1496 reject_low 2 ALIGNMENT 0 Y12-7n13.p1k chr04 760 370 1101351 1101350 C 391 0.00 1496 reject_low 1 ALIGNMENT 0 Y12-7n13.p1k chr16 760 370 850000 849999 C 391 0.00 1496 reject_low 8 ALIGNMENT 282 Y12-7n13.p1k chr07 32 369 817398 817729 F 338 97.34 1496 reject_low 19 ALIGNMENT 0 Y12-7n13.p1k chr01 370 760 160575 160574 F 391 0.00 1496 reject_low 21 ALIGNMENT 0 Y12-7n13.p1k chr07 760 370 541353 541352 C 391 0.00 1496 reject_low 13 ALIGNMENT 0 Y12-7n13.p1k chr10 760 370 483550 483549 C 391 0.00 1496 reject_low 14 ALIGNMENT 298 Y12-7n13.p1k chr16 52 369 850645 850962 F 318 100.00 1496 reject_low 17 ALIGNMENT 224 Y12-7n13.p1k chr01 52 369 160259 160575 F 318 92.45 1496 reject_low 21 ALIGNMENT 225 Y12-7n13.p1k chr01 52 370 165847 166164 F 319 92.48 1496 reject_low 20 ALIGNMENT 0 Y12-7n13.p1k chr16 370 760 856550 856549 F 391 0.00 1496 reject_low 15 ALIGNMENT 0 Y12-7n13.p1k chr03 211 62 169725 169724 C 150 0.00 1496 reject_low 23 ALIGNMENT 0 Y12-7n13.p1k chr07 370 760 817729 817728 F 391 0.00 1496 reject_low 19 ALIGNMENT 0 Y12-7n13.p1k chr13 373 760 378624 378623 F 388 0.00 1496 reject_low 2 ALIGNMENT 298 Y12-7n13.p1k chr15 369 52 123290 123607 C 318 100.00 1496 reject_low 16 ALIGNMENT 0 Y12-7n13.p1k chr04 760 370 1095763 1095762 C 391 0.00 1496 reject_low 5 ALIGNMENT 0 Y12-7n13.p1k chr15 760 373 117700 117699 C 388 0.00 1496 reject_low 3 ALIGNMENT 0 Y12-7n13.p1k chr10 760 371 472377 472376 C 390 0.00 1496 reject_low 12 ALIGNMENT 284 Y12-7n13.p1k chr08 31 369 543609 543941 F 339 97.35 1496 reject_low 18 ALIGNMENT 0 Y12-7n13.p1k chr16 370 760 850962 850961 F 391 0.00 1496 reject_low 17 ALIGNMENT 0 Y12-7n13.p1k chr07 760 242 817207 817206 C 519 0.00 1496 reject_low 22 ALIGNMENT 0 Y12-7n13.p1k chr15 760 370 123291 123290 C 391 0.00 1496 reject_low 16 ALIGNMENT 0 Y12-7n13.p1k chr12 370 760 215418 215417 F 391 0.00 1496 reject_low 6 ALIGNMENT 315 Y12-7n13.p1k chr04 369 28 1101350 1101691 C 342 99.42 1496 reject_low 1 ALIGNMENT 314 Y12-7n13.p1k chr12 32 369 220669 221006 F 338 99.70 1496 reject_low 11 ALIGNMENT 315 Y12-7n13.p1k chr05 32 370 498079 498417 F 339 99.71 1496 reject_low 9 ALIGNMENT 881 Y12-7n14.q1k chr16 28 1024 362477 363469 F 997 97.29 1387 accept 0 ALIGNMENT 1013 Y12-7n14.p1k chr16 1283 16 365629 366915 C 1268 94.72 1464 accept 0 ALIGNMENT 1018 Y12-7n15.p1k chr12 21 1152 460927 462073 F 1132 97.08 1395 accept 1 ALIGNMENT 0 Y12-7n15.p1k chr12 806 842 490543 490542 F 37 0.00 1395 reject_low 2 ALIGNMENT 989 Y12-7n15.q1k chr12 1158 34 456067 457206 C 1125 96.36 1304 accept 0 ALIGNMENT 1018 Y12-7n15.p1k chr12 21 1152 451790 452936 F 1132 97.08 1395 accept 0 ALIGNMENT 753 Y12-7n15.p1k chr12 21 805 489758 490543 F 785 98.85 1395 reject_low 2 ALIGNMENT 989 Y12-7n15.q1k chr12 1158 34 465204 466343 C 1125 96.36 1304 accept 1 ALIGNMENT 0 Y12-7n16.q1k chr10 391 840 382516 382515 F 450 0.00 1302 reject_low 4 ALIGNMENT 893 Y12-7n16.q1k chr04 36 1072 44859 45904 F 1037 95.95 1302 reject_low 1 ALIGNMENT 968 Y12-7n16.q1k chr14 36 1091 252853 253919 F 1056 97.73 1302 accept 0 ALIGNMENT 923 Y12-7n16.p1k chr14 1167 24 257306 258464 C 1144 95.37 1427 accept 0 ALIGNMENT 0 Y12-7n16.q1k chr01 840 397 140299 140298 C 444 0.00 1302 reject_low 2 ALIGNMENT 0 Y12-7n16.q1k chr12 83 62 96662 96661 C 22 0.00 1302 reject_low 3 ALIGNMENT 138 Y12-7n16.q1k chr01 396 36 140298 140658 C 361 79.78 1302 reject_low 2 ALIGNMENT 0 Y12-7n16.q1k chr10 62 256 382383 382382 F 195 0.00 1302 reject_low 4 ALIGNMENT 0 Y12-7n16.q1k chr12 840 397 96350 96349 C 444 0.00 1302 reject_low 3 ALIGNMENT 126 Y12-7n16.q1k chr12 396 84 96349 96661 C 313 80.51 1302 reject_low 3 ALIGNMENT 45 Y12-7n16.q1k chr10 257 390 382383 382516 F 134 79.10 1302 reject_low 4 ALIGNMENT 986 Y12-7n18.p1k chr08 1190 16 150774 151958 C 1175 95.83 1432 accept_chi 0 ALIGNMENT 845 Y12-7n18.q1k chr11 1157 41 439344 440468 C 1117 93.82 1285 accept_chi 1 ALIGNMENT 979 Y12-7n19.q1k chr02 1203 37 672133 673303 C 1167 95.46 1300 accept 0 ALIGNMENT 869 Y12-7n19.p1k chr02 18 999 668880 669859 F 982 97.05 1395 accept 0 ALIGNMENT 968 Y12-7n20.p1k chr10 17 1106 47948 49044 F 1090 97.43 1416 accept 0 ALIGNMENT 800 Y12-7n20.q1k chr10 962 36 51672 52612 C 927 96.98 1247 accept 0 ALIGNMENT 1017 Y12-7n21.q1k chr12 38 1200 452588 453765 F 1163 96.39 1255 accept 0 ALIGNMENT 1017 Y12-7n21.q1k chr12 38 1200 461725 462902 F 1163 96.39 1255 accept 1 ALIGNMENT 1047 Y12-7n22.p1k chr13 1217 22 920458 921646 C 1196 96.74 1401 reject_low 2 ALIGNMENT 999 Y12-7n22.p1k chr15 1217 22 1080644 1081838 C 1196 95.40 1401 ambiguous_tel 1 ALIGNMENT 996 Y12-7n22.p1k chr16 22 1217 9303 10498 F 1196 95.32 1401 ambiguous_tel 0 ALIGNMENT 702 Y12-7n22.q1k chr13 281 1228 917887 918854 F 948 92.93 1235 reject_low 2 ALIGNMENT 863 Y12-7n22.q1k chr16 1212 33 12128 13334 C 1180 92.71 1235 ambiguous_tel 0 ALIGNMENT 0 Y12-7n22.q1k chr13 62 280 917887 917886 F 219 0.00 1235 reject_low 2 ALIGNMENT 847 Y12-7n22.q1k chr15 33 1228 1077801 1079031 F 1196 91.97 1235 ambiguous_tel 1 ALIGNMENT 984 Y12-7n23.q1k chr13 1206 38 740766 741945 C 1169 95.72 1215 accept 0 ALIGNMENT 957 Y12-7n23.p1k chr13 23 1181 736959 738137 F 1159 95.94 1364 accept 0 ALIGNMENT 720 Y12-7o01.q1k chr10 53 947 212976 213860 F 895 95.42 1407 accept 0 ALIGNMENT 649 Y12-7o01.p1k chr10 854 19 216338 217168 C 836 94.74 1477 accept 0 ALIGNMENT 1015 Y12-7o02.p1k chr10 1251 20 53406 54637 C 1232 95.29 1416 accept 0 ALIGNMENT 897 Y12-7o02.q1k chr10 37 1022 50446 51442 F 986 98.48 1230 accept 0 ALIGNMENT 603 Y12-7o03.q1k chr04 41 970 845860 846786 F 930 89.46 1319 accept 0 ALIGNMENT 309 Y12-7o03.p1k chr04 478 22 850213 850658 C 457 92.34 1570 accept 0 ALIGNMENT 1000 Y12-7o07.q1k chr05 1224 29 12887 14089 C 1196 95.40 1317 accept 0 ALIGNMENT 914 Y12-7o07.p1k chr05 19 1076 10038 11110 F 1058 96.98 1359 accept 0 ALIGNMENT 986 Y12-7o08.q1k chr12 36 1136 547175 548281 F 1101 97.91 1297 accept 0 ALIGNMENT 1060 Y12-7o08.p1k chr12 1195 27 550957 552139 C 1169 97.52 1408 accept 0 ALIGNMENT 422 Y12-7o10.q1k chr12 635 16 91177 91794 C 620 91.13 1247 accept 0 ALIGNMENT 1027 Y12-7o10.p1k chr12 24 1162 88469 89618 F 1139 97.54 1438 accept 0 ALIGNMENT 0 Y12-7o11.q1k chr02 80 876 405943 405942 F 797 0.00 1296 reject_low 6 ALIGNMENT 0 Y12-7o11.q1k chr10 80 876 355361 355360 F 797 0.00 1296 reject_low 8 ALIGNMENT 48 Y12-7o11.q1k chr02 32 79 405896 405943 F 48 100.00 1296 reject_low 6 ALIGNMENT 0 Y12-7o11.q1k chr05 88 876 138745 138744 F 789 0.00 1296 reject_low 3 ALIGNMENT 48 Y12-7o11.q1k chr13 79 32 131825 131872 C 48 100.00 1296 reject_low 10 ALIGNMENT 0 Y12-7o11.q1k chr10 876 80 374423 374422 C 797 0.00 1296 reject_low 9 ALIGNMENT 48 Y12-7o11.q1k chr10 79 32 374422 374469 C 48 100.00 1296 reject_low 9 ALIGNMENT 882 Y12-7o11.p1k chr07 1071 30 741476 742530 C 1042 96.26 1380 accept 0 ALIGNMENT 0 Y12-7o11.q1k chr07 94 876 405558 405557 F 783 0.00 1296 reject_low 1 ALIGNMENT 48 Y12-7o11.q1k chr07 94 32 828712 828775 C 63 93.65 1296 reject_low 2 ALIGNMENT 48 Y12-7o11.q1k chr10 32 79 355314 355361 F 48 100.00 1296 reject_low 8 ALIGNMENT 51 Y12-7o11.q1k chr07 32 93 405497 405558 F 62 95.16 1296 reject_low 1 ALIGNMENT 0 Y12-7o11.q1k chr04 80 876 568950 568949 F 797 0.00 1296 reject_low 7 ALIGNMENT 48 Y12-7o11.q1k chr04 32 79 568903 568950 F 48 100.00 1296 reject_low 7 ALIGNMENT 0 Y12-7o11.q1k chr13 876 86 747886 747885 C 791 0.00 1296 reject_low 5 ALIGNMENT 0 Y12-7o11.q1k chr07 876 95 828713 828712 C 782 0.00 1296 reject_low 2 ALIGNMENT 50 Y12-7o11.q1k chr11 85 32 162486 162539 C 54 98.15 1296 reject_low 4 ALIGNMENT 52 Y12-7o11.q1k chr05 32 87 138690 138745 F 56 98.21 1296 reject_low 3 ALIGNMENT 915 Y12-7o11.q1k chr07 32 1107 736369 737455 F 1076 96.84 1296 accept 0 ALIGNMENT 50 Y12-7o11.q1k chr13 85 32 747885 747938 C 54 98.15 1296 reject_low 5 ALIGNMENT 0 Y12-7o11.q1k chr13 876 80 131826 131825 C 797 0.00 1296 reject_low 10 ALIGNMENT 0 Y12-7o11.q1k chr11 876 86 162487 162486 C 791 0.00 1296 reject_low 4 ALIGNMENT 0 Y12-7o12.p1k chr08 380 358 556824 556986 C 23 0.00 1439 reject_low 14 ALIGNMENT 247 Y12-7o12.p1k chr14 25 357 6274 6616 F 333 92.49 1439 reject_low 6 ALIGNMENT 0 Y12-7o12.p1k chr10 310 547 6932 7224 F 238 0.00 1439 reject_low 10 ALIGNMENT 247 Y12-7o12.p1k chr06 25 357 4341 4683 F 333 92.49 1439 reject_low 21 ALIGNMENT 276 Y12-7o12.p1k chr09 25 309 6663 6948 F 285 99.65 1439 reject_low 9 ALIGNMENT 244 Y12-7o12.p1k chr12 25 357 10853 11195 F 333 92.19 1439 reject_low 13 ALIGNMENT 0 Y12-7o12.p1k chr12 922 358 1071653 1071652 C 565 0.00 1439 reject_low 12 ALIGNMENT 368 Y12-7o12.p1k chr04 382 1076 191 897 F 695 88.63 1439 reject_low 20 ALIGNMENT 601 Y12-7o12.p1k chr02 25 1125 5503 6656 F 1101 87.65 1439 reject_low 1 ALIGNMENT 0 Y12-7o12.p1k chr10 358 62 745546 745545 C 297 0.00 1439 reject_low 15 ALIGNMENT 0 Y12-7o12.p1k chr01 62 362 86 85 F 301 0.00 1439 reject_low 19 ALIGNMENT 0 Y12-7o12.p1k chr06 358 358 4684 4838 F 1 0.00 1439 reject_low 21 ALIGNMENT 0 Y12-7o12.p1k chr02 362 62 813109 813108 C 301 0.00 1439 reject_low 18 ALIGNMENT 382 Y12-7o12.p1k chr13 363 1076 5609 6337 F 714 88.66 1439 reject_low 8 ALIGNMENT 357 Y12-7o12.p1k chr14 359 1110 6706 7459 F 752 86.84 1439 reject_low 6 ALIGNMENT 0 Y12-7o12.p1k chr04 62 381 191 190 F 320 0.00 1439 reject_low 20 ALIGNMENT 0 Y12-7o12.p1k chr06 433 480 4913 4919 F 48 0.00 1439 reject_low 21 ALIGNMENT 577 Y12-7o12.p1k chr07 1110 25 1083610 1084694 C 1086 87.85 1439 reject_low 2 ALIGNMENT 0 Y12-7o12.p1k chr09 310 547 6949 7241 F 238 0.00 1439 reject_low 9 ALIGNMENT 428 Y12-7o12.p1k chr09 1052 359 439099 439801 C 694 90.49 1439 reject_low 16 ALIGNMENT 247 Y12-7o12.p1k chr04 357 25 1525451 1525793 C 333 92.49 1439 reject_low 7 ALIGNMENT 383 Y12-7o12.p1k chr12 1062 359 1064301 1065014 C 704 88.35 1439 reject_low 5 ALIGNMENT 244 Y12-7o12.p1k chr13 25 357 5194 5536 F 333 92.19 1439 reject_low 8 ALIGNMENT 0 Y12-7o12.p1k chr13 358 362 5537 5608 F 5 0.00 1439 reject_low 8 ALIGNMENT 371 Y12-7o12.p1k chr12 363 1062 11375 12062 F 700 88.57 1439 reject_low 11 ALIGNMENT 383 Y12-7o12.p1k chr01 363 1052 86 767 F 690 89.57 1439 reject_low 19 ALIGNMENT 247 Y12-7o12.p1k chr08 357 25 556987 557329 C 333 92.49 1439 reject_low 14 ALIGNMENT 383 Y12-7o12.p1k chr04 1076 379 1524615 1525312 C 698 89.11 1439 reject_low 7 ALIGNMENT 421 Y12-7o12.p1k chr03 1076 382 315786 316482 C 695 90.65 1439 reject_low 17 ALIGNMENT 965 Y12-7o12.p1k chr05 1138 25 569530 570658 C 1114 97.76 1439 accept 0 ALIGNMENT 0 Y12-7o12.p1k chr12 358 922 11195 11194 F 565 0.00 1439 reject_low 13 ALIGNMENT 987 Y12-7o12.q1k chr05 35 1126 567819 568918 F 1092 97.34 1320 accept 0 ALIGNMENT 0 Y12-7o12.p1k chr14 358 358 6617 6705 F 1 0.00 1439 reject_low 6 ALIGNMENT 562 Y12-7o12.p1k chr16 25 1076 6183 7216 F 1052 88.02 1439 reject_low 3 ALIGNMENT 276 Y12-7o12.p1k chr10 25 309 6646 6931 F 285 99.65 1439 reject_low 10 ALIGNMENT 335 Y12-7o12.p1k chr09 548 1076 7242 7777 F 529 91.12 1439 reject_low 9 ALIGNMENT 382 Y12-7o12.p1k chr02 1076 363 812380 813108 C 714 88.66 1439 reject_low 18 ALIGNMENT 244 Y12-7o12.p1k chr12 25 357 5318 5660 F 333 92.19 1439 reject_low 11 ALIGNMENT 560 Y12-7o12.p1k chr15 1076 25 1083925 1084958 C 1052 87.93 1439 reject_low 4 ALIGNMENT 30 Y12-7o12.p1k chr06 359 432 4839 4912 F 74 85.14 1439 reject_low 21 ALIGNMENT 323 Y12-7o12.p1k chr08 1050 381 556141 556823 C 670 86.72 1439 reject_low 14 ALIGNMENT 335 Y12-7o12.p1k chr10 548 1076 7225 7760 F 529 91.12 1439 reject_low 10 ALIGNMENT 0 Y12-7o12.p1k chr09 358 62 439802 439801 C 297 0.00 1439 reject_low 16 ALIGNMENT 0 Y12-7o12.p1k chr03 381 62 316483 316482 C 320 0.00 1439 reject_low 17 ALIGNMENT 247 Y12-7o12.p1k chr12 357 25 1071652 1071994 C 333 92.49 1439 reject_low 12 ALIGNMENT 428 Y12-7o12.p1k chr10 1076 359 744824 745545 C 718 90.25 1439 reject_low 15 ALIGNMENT 339 Y12-7o12.p1k chr06 481 1110 4920 5561 F 630 87.94 1439 reject_low 21 ALIGNMENT 305 Y12-7o12.p1k chr12 357 25 1065154 1065488 C 333 97.90 1439 reject_low 5 ALIGNMENT 0 Y12-7o12.p1k chr12 358 362 5661 11374 F 5 0.00 1439 reject_low 11 ALIGNMENT 0 Y12-7o12.p1k chr12 358 358 1065015 1065153 C 1 0.00 1439 reject_low 5 ALIGNMENT 0 Y12-7o12.p1k chr04 378 358 1525313 1525450 C 21 0.00 1439 reject_low 7 ALIGNMENT 909 Y12-7o13.p1k chr10 20 1038 147955 148988 F 1019 97.55 1338 accept 0 ALIGNMENT 1000 Y12-7o13.q1k chr10 1178 29 151983 153144 C 1150 96.87 1299 accept 0 ALIGNMENT 933 Y12-7o14.q1k chr09 40 1097 277994 279056 F 1058 97.16 1313 accept_chi 1 ALIGNMENT 1001 Y12-7o14.p1k chr13 1225 21 686914 688125 C 1205 95.68 1446 accept_chi 0 ALIGNMENT 1028 Y12-7o15.p1k chr12 1194 19 782261 783441 C 1176 96.51 1435 accept 0 ALIGNMENT 1018 Y12-7o15.q1k chr12 33 1182 779045 780201 F 1150 97.13 1289 accept 0 ALIGNMENT 1055 Y12-7o16.p1k chr10 26 1212 616045 617239 F 1187 97.30 1456 accept 0 ALIGNMENT 1000 Y12-7o16.q1k chr10 1101 35 620480 621550 C 1067 98.22 1294 accept 0 ALIGNMENT 925 Y12-7o17.p1k chr10 22 1245 426489 427714 F 1224 93.95 1433 accept 0 ALIGNMENT 1004 Y12-7o17.q1k chr10 1131 36 429694 430796 C 1096 97.72 1268 accept 0 ALIGNMENT 467 Y12-7o19.q1k chr12 12 637 366580 367205 F 626 92.33 1338 accept_chi 0 ALIGNMENT 411 Y12-7o19.p1k chr10 248 872 426694 427313 F 625 89.60 1488 accept_chi 1 ALIGNMENT 921 Y12-7o20.q1k chr04 38 1207 1220107 1221290 F 1170 94.36 1255 accept 0 ALIGNMENT 1007 Y12-7o21.p1k chr10 20 1243 676571 677804 F 1224 95.67 1398 accept 0 ALIGNMENT 964 Y12-7o21.q1k chr10 1134 36 680820 681934 C 1099 96.72 1222 accept 0 ALIGNMENT 779 Y12-7o22.p1k chr12 1130 83 768989 770030 C 1048 93.23 1404 accept 0 ALIGNMENT 344 Y12-7o24.q1k chr15 9 641 47916 48536 F 633 86.10 1268 accept 0 ALIGNMENT 749 Y12-7o24.p1k chr15 1049 56 51758 52730 C 994 93.76 1495 accept 0 ALIGNMENT 948 Y12-7p01.q1k chr09 36 1140 246653 247753 F 1105 96.20 1291 accept 0 ALIGNMENT 0 Y12-7p01.q1k chr07 835 419 74687 74686 C 417 0.00 1291 reject_low 1 ALIGNMENT 37 Y12-7p01.q1k chr06 195 259 192156 192219 F 65 87.69 1291 reject_low 2 ALIGNMENT 0 Y12-7p01.q1k chr06 62 194 192156 192155 F 133 0.00 1291 reject_low 2 ALIGNMENT 163 Y12-7p01.q1k chr07 418 36 74686 75070 C 383 81.46 1291 reject_low 1 ALIGNMENT 917 Y12-7p01.p1k chr09 1065 23 249352 250391 C 1043 97.12 1407 accept 0 ALIGNMENT 0 Y12-7p01.q1k chr06 260 835 192219 192218 F 576 0.00 1291 reject_low 2 ALIGNMENT 834 Y12-7p02.q1k chr02 1 1094 180785 181849 F 1094 94.24 1254 accept 0 ALIGNMENT 899 Y12-7p02.p1k chr02 1142 15 184006 185125 C 1128 95.04 1421 accept 0 ALIGNMENT 966 Y12-7p03.p1k chr15 1181 17 412890 414041 C 1165 96.14 1460 accept 0 ALIGNMENT 924 Y12-7p03.q1k chr15 30 1138 408110 409215 F 1109 95.85 1318 accept 0 ALIGNMENT 985 Y12-7p04.p1k chr12 21 1186 177997 179176 F 1166 95.54 1397 accept 0 ALIGNMENT 991 Y12-7p04.q1k chr12 1200 32 182367 183551 C 1169 95.89 1276 accept 0 ALIGNMENT 696 Y12-7p05.p1k chr10 886 26 250159 251005 C 861 95.82 1539 accept 0 ALIGNMENT 788 Y12-7p05.q1k chr10 13 1024 245222 246231 F 1012 94.37 1252 accept 0 ALIGNMENT 622 Y12-7p06.p1k chr09 1031 220 234977 235791 C 812 93.47 1476 accept 0 ALIGNMENT 279 Y12-7p08.q1k chr07 46 622 937444 938014 F 577 84.92 1472 accept 0 ALIGNMENT 324 Y12-7p10.q1k chr07 39 714 933043 933717 F 676 83.73 1592 accept 0 ALIGNMENT 656 Y12-7p11.p1k chr13 936 19 64150 65052 C 918 93.46 1539 accept 0 ALIGNMENT 228 Y12-7p14.p1k chr10 228 742 12905 13419 F 515 82.14 1417 reject_low 1 ALIGNMENT 64 Y12-7p14.p1k chr14 698 488 753098 753309 C 211 77.25 1417 reject_low 2 ALIGNMENT 238 Y12-7p14.p1k chr09 228 773 12922 13467 F 546 81.87 1417 accept_tel 0 ALIGNMENT 541 Y12-7p15.q1k chr12 831 35 465547 466341 C 797 89.84 1381 accept 1 ALIGNMENT 541 Y12-7p15.q1k chr12 831 35 456410 457204 C 797 89.84 1381 accept 0 ALIGNMENT 358 Y12-7p16.p1k chr09 210 843 12886 13518 F 634 86.44 1444 ambiguous_tel 0 ALIGNMENT 257 Y12-7p16.q1k chr14 33 744 252857 253558 F 712 79.92 1418 manual 2 ALIGNMENT 358 Y12-7p16.p1k chr10 210 843 12869 13501 F 634 86.44 1444 ambiguous_tel 1 ALIGNMENT 221 Y12-7p16.q1k chr04 33 744 44863 45564 F 712 78.37 1418 manual 3 ALIGNMENT 622 Y12-7p20.p1k chr16 190 1086 641693 642592 F 897 91.42 1461 accept 0 ALIGNMENT 443 Y12-7p21.p1k chr02 91 701 123646 124250 F 611 92.31 1451 accept 0 ALIGNMENT 701 Y12-7p22.p1k chr15 1168 202 1016057 1017015 C 967 92.04 1418 accept 0 ALIGNMENT 90 Y12-7p22.q1k chr15 92 416 1013190 1013508 F 325 77.85 1386 accept 0 ALIGNMENT 317 Y12-7p24.p1k chr12 820 388 134830 135259 C 433 92.15 1683 accept 0 ALIGNMENT 374 Y12-8a01.q1k chr14 749 34 491870 492566 C 716 85.89 1472 accept 0 ALIGNMENT 511 Y12-8a02.p1k chr07 24 853 456483 457290 F 830 89.88 1628 accept 0 ALIGNMENT 766 Y12-8a03.p1k chr11 105 1093 610272 611253 F 989 94.03 1523 accept 0 ALIGNMENT 640 Y12-8a04.p1k chr07 55 941 456518 457384 F 887 93.24 1514 accept_chi 1 ALIGNMENT 790 Y12-8a04.q1k chr08 35 1074 121499 122536 F 1040 93.08 1369 accept_chi 0 ALIGNMENT 266 Y12-8a05.p1k chr13 758 111 516375 517012 C 648 81.79 1422 accept 0 ALIGNMENT 973 Y12-8a06.q1k chr04 1191 36 22729 23882 C 1156 95.76 1394 accept 0 ALIGNMENT 940 Y12-8a06.p1k chr04 22 1232 18899 20093 F 1211 94.05 1428 accept 0 ALIGNMENT 948 Y12-8a07.q1k chr15 1072 29 923158 924205 C 1044 98.08 1365 accept 0 ALIGNMENT 684 Y12-8a07.p1k chr15 25 897 920006 920879 F 873 93.13 1357 accept 0 ALIGNMENT 567 Y12-8a08.p1k chr15 259 1150 538769 539675 F 892 89.46 1449 accept 0 ALIGNMENT 310 Y12-8a09.p1k chr02 690 94 535686 536277 C 597 84.09 1422 accept 0 ALIGNMENT 833 Y12-8a09.q1k chr02 36 997 532289 533250 F 962 96.67 1468 accept 0 ALIGNMENT 801 Y12-8a10.q1k chr03 36 1154 29094 30216 F 1119 93.48 1374 accept 0 ALIGNMENT 942 Y12-8a10.p1k chr03 1099 21 34239 35331 C 1079 96.85 1397 accept 0 ALIGNMENT 854 Y12-8a11.p1k chr13 27 1077 826728 827784 F 1051 94.58 1414 accept 0 ALIGNMENT 1025 Y12-8a11.q1k chr13 1218 31 830709 831898 C 1188 96.55 1348 accept 0 ALIGNMENT 981 Y12-8a12.q1k chr15 1138 36 835496 836607 C 1103 97.01 1306 accept_chi 0 ALIGNMENT 665 Y12-8a12.p1k chr12 785 1 529832 530626 C 785 96.18 1198 accept_chi 1 ALIGNMENT 213 Y12-8a13.p1k chr16 914 449 92874 93344 C 466 82.62 1388 accept 0 ALIGNMENT 945 Y12-8a14.q1k chr15 1175 34 521363 522500 C 1142 95.45 1349 accept 0 ALIGNMENT 979 Y12-8a14.p1k chr15 19 1121 517955 519060 F 1103 97.46 1434 accept 0 ALIGNMENT 1046 Y12-8a15.q1k chr04 1219 36 399320 400511 C 1184 96.62 1340 accept 0 ALIGNMENT 368 Y12-8a15.p1k chr04 19 496 396784 397268 F 478 93.31 1368 accept 0 ALIGNMENT 976 Y12-8a16.q1k chr06 1273 35 107884 109135 C 1239 94.19 1331 accept 0 ALIGNMENT 1057 Y12-8a16.p1k chr06 21 1270 105026 106283 F 1250 95.52 1417 accept 0 ALIGNMENT 608 Y12-8a17.q1k chr04 1132 36 522752 523858 C 1097 86.69 1346 accept 0 ALIGNMENT 78 Y12-8a18.q1k chr07 423 327 920579 920675 C 97 93.81 1337 reject_low 1 ALIGNMENT 0 Y12-8a18.q1k chr07 326 105 920676 920675 C 222 0.00 1337 reject_low 1 ALIGNMENT 0 Y12-8a18.q1k chr07 898 424 920580 920579 C 475 0.00 1337 reject_low 1 ALIGNMENT 1037 Y12-8a18.q1k chr12 1298 29 241357 242622 C 1270 95.20 1337 accept 0 ALIGNMENT 1023 Y12-8a19.q1k chr15 33 1223 186082 187275 F 1191 96.22 1305 accept_chi 0 ALIGNMENT 936 Y12-8a19.p1k chr11 1179 29 324814 325973 C 1151 95.83 1363 accept_chi 1 ALIGNMENT 992 Y12-8a21.p1k chr13 20 1199 771072 772259 F 1180 95.34 1318 accept 0 ALIGNMENT 871 Y12-8a21.q1k chr13 1012 36 775886 776878 C 977 97.54 1211 accept 0 ALIGNMENT 695 Y12-8a23.p1k chr03 986 28 21814 22760 C 959 93.12 1420 accept 0 ALIGNMENT 203 Y12-8a24.q1k chr15 282 904 622640 623262 F 623 78.17 1343 reject_low 1 ALIGNMENT 869 Y12-8a24.q1k chr04 33 1075 1281796 1282828 F 1043 95.78 1343 accept 0 ALIGNMENT 526 Y12-8a24.p1k chr04 794 27 1285370 1286129 C 768 91.93 1430 accept 0 ALIGNMENT 0 Y12-8a24.q1k chr15 62 281 622640 622639 F 220 0.00 1343 reject_low 1 ALIGNMENT 984 Y12-8b03.q1k chr15 32 1211 205740 206920 F 1180 95.42 1371 accept 0 ALIGNMENT 772 Y12-8b03.p1k chr15 1008 21 208831 209805 C 988 94.43 1500 accept 0 ALIGNMENT 915 Y12-8b04.q1k chr15 36 1199 991195 992359 F 1164 94.42 1368 accept 0 ALIGNMENT 946 Y12-8b04.p1k chr15 1132 16 995672 996805 C 1117 96.06 1394 accept 0 ALIGNMENT 878 Y12-8b05.q1k chr15 30 1204 299626 300801 F 1175 93.45 1368 accept 0 ALIGNMENT 902 Y12-8b05.p1k chr15 1017 22 305205 306207 C 996 97.39 1330 accept 0 ALIGNMENT 935 Y12-8b06.q1k chr16 35 1141 608906 610026 F 1107 95.66 1363 accept 0 ALIGNMENT 892 Y12-8b06.p1k chr16 1057 26 612378 613420 C 1032 96.51 1329 accept 0 ALIGNMENT 967 Y12-8b08.p1k chr05 1142 23 240541 241668 C 1120 96.43 1390 accept 0 ALIGNMENT 972 Y12-8b08.q1k chr05 35 1197 237553 238715 F 1163 95.87 1379 accept 0 ALIGNMENT 946 Y12-8b09.q1k chr07 1184 35 1015651 1016787 C 1150 95.74 1397 accept 0 ALIGNMENT 858 Y12-8b10.p1k chr07 1078 19 757094 758143 C 1060 95.38 1438 accept 0 ALIGNMENT 1034 Y12-8b10.q1k chr07 32 1259 753502 754725 F 1228 95.77 1383 accept 0 ALIGNMENT 76 Y12-8b13.q1k chr13 334 256 420582 420660 C 79 98.73 1308 reject_low 12 ALIGNMENT 0 Y12-8b13.q1k chr11 254 62 307864 307863 C 193 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-8b13.q1k chr07 917 336 412292 412291 C 582 0.00 1308 reject_low 8 ALIGNMENT 81 Y12-8b13.q1k chr10 256 336 378276 378356 F 81 100.00 1308 reject_low 5 ALIGNMENT 0 Y12-8b13.q1k chr13 255 62 420661 420660 C 194 0.00 1308 reject_low 12 ALIGNMENT 77 Y12-8b13.q1k chr12 335 256 687855 687934 C 80 98.75 1308 reject_low 10 ALIGNMENT 0 Y12-8b13.q1k chr10 62 255 378276 378275 F 194 0.00 1308 reject_low 5 ALIGNMENT 78 Y12-8b13.q1k chr07 335 255 412291 412371 C 81 98.77 1308 reject_low 8 ALIGNMENT 83 Y12-8b13.q1k chr07 346 255 73810 73902 C 92 97.83 1308 reject_low 2 ALIGNMENT 0 Y12-8b13.q1k chr13 242 62 372530 372529 C 181 0.00 1308 reject_low 1 ALIGNMENT 0 Y12-8b13.q1k chr08 238 62 85385 85384 C 177 0.00 1308 accept 0 ALIGNMENT 1015 Y12-8b13.p1k chr08 18 1188 79905 81089 F 1171 96.67 1401 accept 0 ALIGNMENT 74 Y12-8b13.q1k chr15 328 255 663813 663886 C 74 100.00 1308 reject_low 13 ALIGNMENT 0 Y12-8b13.q1k chr05 339 917 438778 438777 F 579 0.00 1308 reject_low 4 ALIGNMENT 0 Y12-8b13.q1k chr13 917 337 372438 372437 C 581 0.00 1308 reject_low 1 ALIGNMENT 0 Y12-8b13.q1k chr07 62 254 823486 823485 F 193 0.00 1308 reject_low 9 ALIGNMENT 83 Y12-8b13.q1k chr11 338 255 307780 307863 C 84 100.00 1308 reject_low 3 ALIGNMENT 0 Y12-8b13.q1k chr07 254 62 73903 73902 C 193 0.00 1308 reject_low 2 ALIGNMENT 0 Y12-8b13.q1k chr05 336 917 469531 469530 F 582 0.00 1308 reject_low 6 ALIGNMENT 77 Y12-8b13.q1k chr11 256 332 379323 379399 F 77 100.00 1308 reject_low 11 ALIGNMENT 0 Y12-8b13.q1k chr07 254 62 412372 412371 C 193 0.00 1308 reject_low 8 ALIGNMENT 0 Y12-8b13.q1k chr13 917 335 420583 420582 C 583 0.00 1308 reject_low 12 ALIGNMENT 0 Y12-8b13.q1k chr11 62 255 379323 379322 F 194 0.00 1308 reject_low 11 ALIGNMENT 0 Y12-8b13.q1k chr13 254 62 586710 586709 C 193 0.00 1308 reject_low 7 ALIGNMENT 0 Y12-8b13.q1k chr10 337 917 378356 378355 F 581 0.00 1308 reject_low 5 ALIGNMENT 0 Y12-8b13.q1k chr11 333 917 379399 379398 F 585 0.00 1308 reject_low 11 ALIGNMENT 78 Y12-8b13.q1k chr13 336 255 586628 586709 C 82 98.78 1308 reject_low 7 ALIGNMENT 0 Y12-8b13.q1k chr11 917 339 307781 307780 C 579 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-8b13.q1k chr12 917 336 687856 687855 C 582 0.00 1308 reject_low 10 ALIGNMENT 0 Y12-8b13.q1k chr15 917 329 663814 663813 C 589 0.00 1308 reject_low 13 ALIGNMENT 0 Y12-8b13.q1k chr15 254 62 663887 663886 C 193 0.00 1308 reject_low 13 ALIGNMENT 0 Y12-8b13.q1k chr07 917 347 73811 73810 C 571 0.00 1308 reject_low 2 ALIGNMENT 83 Y12-8b13.q1k chr13 336 243 372437 372529 C 94 96.81 1308 reject_low 1 ALIGNMENT 78 Y12-8b13.q1k chr05 254 335 469450 469531 F 82 98.78 1308 reject_low 6 ALIGNMENT 705 Y12-8b13.q1k chr08 1123 239 84482 85384 C 885 94.80 1308 accept 0 ALIGNMENT 0 Y12-8b13.q1k chr12 255 62 687935 687934 C 194 0.00 1308 reject_low 10 ALIGNMENT 0 Y12-8b13.q1k chr05 62 255 438696 438695 F 194 0.00 1308 reject_low 4 ALIGNMENT 0 Y12-8b13.q1k chr05 62 253 469450 469449 F 192 0.00 1308 reject_low 6 ALIGNMENT 78 Y12-8b13.q1k chr07 255 335 823486 823566 F 81 98.77 1308 reject_low 9 ALIGNMENT 0 Y12-8b13.q1k chr13 917 337 586629 586628 C 581 0.00 1308 reject_low 7 ALIGNMENT 82 Y12-8b13.q1k chr05 256 338 438696 438778 F 83 100.00 1308 reject_low 4 ALIGNMENT 0 Y12-8b13.q1k chr07 336 917 823566 823565 F 582 0.00 1308 reject_low 9 ALIGNMENT 965 Y12-8b14.q1k chr03 1162 36 189594 190744 C 1127 96.18 1289 accept 0 ALIGNMENT 920 Y12-8b14.p1k chr03 19 1089 186778 187864 F 1071 96.36 1377 accept 0 ALIGNMENT 1081 Y12-8b15.q1k chr10 1310 40 504009 505291 C 1271 95.99 1325 accept_chi 0 ALIGNMENT 729 Y12-8b15.p1k chr08 4 966 79973 80931 F 963 93.35 1330 accept_chi 1 ALIGNMENT 86 Y12-8b16.q1k chr12 625 716 374345 374436 F 92 97.83 1326 reject_low 1 ALIGNMENT 0 Y12-8b16.q1k chr15 884 719 340290 340289 C 166 0.00 1326 reject_low 4 ALIGNMENT 0 Y12-8b16.q1k chr12 62 624 374345 374344 F 563 0.00 1326 reject_low 1 ALIGNMENT 83 Y12-8b16.q1k chr04 723 631 619949 620041 C 93 96.77 1326 reject_low 2 ALIGNMENT 82 Y12-8b16.q1k chr15 718 634 340289 340373 C 85 98.82 1326 reject_low 4 ALIGNMENT 0 Y12-8b16.q1k chr10 62 628 233849 233848 F 567 0.00 1326 reject_low 5 ALIGNMENT 80 Y12-8b16.q1k chr05 724 636 492331 492419 C 89 96.63 1326 reject_low 3 ALIGNMENT 77 Y12-8b16.q1k chr10 629 711 233849 233931 F 83 97.59 1326 reject_low 5 ALIGNMENT 0 Y12-8b16.q1k chr12 717 884 374436 374435 F 168 0.00 1326 reject_low 1 ALIGNMENT 0 Y12-8b16.q1k chr05 635 62 492420 492419 C 574 0.00 1326 reject_low 3 ALIGNMENT 0 Y12-8b16.q1k chr15 633 62 340374 340373 C 572 0.00 1326 reject_low 4 ALIGNMENT 903 Y12-8b16.p1k chr11 1067 21 492895 493961 C 1047 97.23 1349 accept 0 ALIGNMENT 1023 Y12-8b16.q1k chr11 36 1258 490013 491238 F 1223 96.16 1326 accept 0 ALIGNMENT 0 Y12-8b16.q1k chr04 630 62 620042 620041 C 569 0.00 1326 reject_low 2 ALIGNMENT 0 Y12-8b16.q1k chr10 712 884 233931 233930 F 173 0.00 1326 reject_low 5 ALIGNMENT 0 Y12-8b16.q1k chr05 884 725 492332 492331 C 160 0.00 1326 reject_low 3 ALIGNMENT 0 Y12-8b16.q1k chr04 884 724 619950 619949 C 161 0.00 1326 reject_low 2 ALIGNMENT 997 Y12-8b17.q1k chr16 37 1235 119218 120421 F 1199 96.16 1326 accept 0 ALIGNMENT 1018 Y12-8b17.p1k chr16 1225 26 121988 123174 C 1200 96.58 1411 accept 0 ALIGNMENT 938 Y12-8b18.p1k chr08 35 1102 349721 350804 F 1068 97.47 1325 accept 0 ALIGNMENT 1022 Y12-8b18.q1k chr08 1280 40 353183 354428 C 1241 95.41 1331 accept 0 ALIGNMENT 965 Y12-8b19.q1k chr06 33 1197 107960 109136 F 1165 95.62 1259 accept 0 ALIGNMENT 959 Y12-8b19.p1k chr06 1251 24 111179 112412 C 1228 94.46 1384 accept 0 ALIGNMENT 989 Y12-8b21.p1k chr11 1157 23 464851 465995 C 1135 97.00 1310 accept 0 ALIGNMENT 1005 Y12-8b21.q1k chr11 34 1184 461784 462929 F 1151 97.13 1236 accept 0 ALIGNMENT 974 Y12-8b23.q1k chr13 1193 35 274971 276140 C 1159 96.20 1255 accept 0 ALIGNMENT 1040 Y12-8b23.p1k chr13 25 1248 271380 272596 F 1224 96.00 1266 accept 0 ALIGNMENT 1012 Y12-8b24.q1k chr02 1249 32 693241 694457 C 1218 95.73 1267 accept 0 ALIGNMENT 975 Y12-8b24.p1k chr02 17 1192 690491 691648 F 1176 96.26 1271 accept 0 ALIGNMENT 993 Y12-8c02.p1k chr13 21 1202 229743 230920 F 1182 95.77 1426 accept 0 ALIGNMENT 0 Y12-8c03.q1k chr04 787 398 1359968 1360391 C 390 0.00 1379 reject_low 1 ALIGNMENT 0 Y12-8c03.p1k chr04 62 825 1354825 1354824 F 764 0.00 1394 reject_low 1 ALIGNMENT 128 Y12-8c03.p1k chr04 826 1051 1354825 1355057 F 226 87.17 1394 reject_low 1 ALIGNMENT 54 Y12-8c03.q1k chr04 846 788 1359909 1359967 C 59 98.31 1379 reject_low 1 ALIGNMENT 293 Y12-8c03.q1k chr04 397 35 1360392 1360754 C 363 93.94 1379 reject_low 1 ALIGNMENT 1034 Y12-8c03.q1k chr13 35 1222 223021 224209 F 1188 96.80 1379 accept 0 ALIGNMENT 911 Y12-8c03.p1k chr13 1077 15 226426 227506 C 1063 96.71 1394 accept 0 ALIGNMENT 976 Y12-8c05.q1k chr04 36 1142 117378 118499 F 1107 97.56 1362 accept 0 ALIGNMENT 0 Y12-8c05.q1k chr04 62 807 217999 217998 F 746 0.00 1362 reject_low 1 ALIGNMENT 941 Y12-8c05.p1k chr04 1141 17 120634 121778 C 1125 96.18 1420 accept 0 ALIGNMENT 228 Y12-8c05.q1k chr04 808 1142 217999 218348 F 335 91.94 1362 reject_low 1 ALIGNMENT 908 Y12-8c06.q1k chr10 1153 32 724231 725365 C 1122 95.28 1367 accept 0 ALIGNMENT 22 Y12-8c06.q1k chr10 739 762 724634 724657 F 24 100.00 1367 reject_low 1 ALIGNMENT 0 Y12-8c06.q1k chr10 763 863 724657 724656 F 101 0.00 1367 reject_low 1 ALIGNMENT 0 Y12-8c06.q1k chr10 62 738 724634 724633 F 677 0.00 1367 reject_low 1 ALIGNMENT 1008 Y12-8c06.p1k chr10 25 1210 719565 720763 F 1186 95.95 1398 accept 0 ALIGNMENT 178 Y12-8c07.p1k chr13 155 766 848216 848823 F 612 77.45 1615 accept 0 ALIGNMENT 836 Y12-8c09.q1k chr02 1087 32 142814 143882 C 1056 95.08 1318 accept 0 ALIGNMENT 983 Y12-8c10.q1k chr14 1175 34 568675 569829 C 1142 96.41 1337 accept_trans 0 ALIGNMENT 944 Y12-8c10.p1k chr14 21 1055 559567 560600 F 1035 98.16 1371 accept_trans 0 ALIGNMENT 1002 Y12-8c11.q1k chr04 35 1220 641768 642948 F 1186 96.63 1406 accept 0 ALIGNMENT 957 Y12-8c11.p1k chr04 1177 29 652471 653628 C 1149 95.82 1448 accept 0 ALIGNMENT 952 Y12-8c12.p1k chr02 21 1130 330356 331489 F 1110 95.95 1376 accept_chi 1 ALIGNMENT 1005 Y12-8c12.q1k chr05 1212 37 304114 305297 C 1176 95.66 1373 accept_chi 0 ALIGNMENT 20 Y12-8c14.p1k chr14 413 453 70034 70074 F 41 92.68 1355 reject_low 3 ALIGNMENT 0 Y12-8c14.p1k chr11 415 62 381319 381318 C 354 0.00 1355 reject_low 2 ALIGNMENT 21 Y12-8c14.p1k chr13 453 392 588642 588703 C 62 83.87 1355 reject_low 1 ALIGNMENT 20 Y12-8c14.p1k chr14 422 450 333262 333290 F 29 100.00 1355 reject_low 4 ALIGNMENT 22 Y12-8c14.p1k chr11 451 416 381283 381318 C 36 97.22 1355 reject_low 2 ALIGNMENT 0 Y12-8c14.p1k chr13 391 62 588704 588703 C 330 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-8c14.p1k chr14 62 412 70034 70033 F 351 0.00 1355 reject_low 3 ALIGNMENT 0 Y12-8c14.p1k chr13 801 454 588643 588642 C 348 0.00 1355 reject_low 1 ALIGNMENT 0 Y12-8c14.p1k chr14 62 421 333262 333261 F 360 0.00 1355 reject_low 4 ALIGNMENT 911 Y12-8c14.p1k chr10 1083 20 149423 150492 C 1064 96.62 1355 accept 0 ALIGNMENT 948 Y12-8c14.q1k chr10 34 1151 146398 147500 F 1118 96.24 1382 accept 0 ALIGNMENT 0 Y12-8c14.p1k chr14 454 801 70074 70073 F 348 0.00 1355 reject_low 3 ALIGNMENT 0 Y12-8c14.p1k chr14 451 801 333290 333289 F 351 0.00 1355 reject_low 4 ALIGNMENT 0 Y12-8c14.p1k chr11 801 452 381284 381283 C 350 0.00 1355 reject_low 2 ALIGNMENT 970 Y12-8c15.q1k chr15 1176 38 242940 244095 C 1139 96.22 1301 accept 0 ALIGNMENT 984 Y12-8c15.p1k chr15 18 1184 239807 240994 F 1167 96.14 1379 accept 0 ALIGNMENT 996 Y12-8c16.p1k chr05 18 1227 13159 14392 F 1210 95.62 1387 accept 0 ALIGNMENT 995 Y12-8c16.q1k chr05 1229 38 17068 18264 C 1192 95.97 1319 accept 0 ALIGNMENT 958 Y12-8c19.p1k chr09 1122 19 75613 76735 C 1104 96.92 1382 accept 0 ALIGNMENT 997 Y12-8c19.q1k chr09 34 1191 71175 72347 F 1158 96.63 1281 accept 0 ALIGNMENT 495 Y12-8c20.p1k chr12 1111 287 460009 460875 C 825 88.24 1363 accept 0 ALIGNMENT 212 Y12-8c20.p1k chr12 587 287 451419 451738 C 301 90.03 1363 reject_low 2 ALIGNMENT 934 Y12-8c20.q1k chr12 34 1193 467123 468288 F 1160 94.91 1298 reject_low 1 ALIGNMENT 0 Y12-8c20.p1k chr12 756 588 451420 451419 C 169 0.00 1363 reject_low 2 ALIGNMENT 936 Y12-8c20.q1k chr12 34 1247 457986 459205 F 1214 93.90 1298 accept 0 ALIGNMENT 1004 Y12-8c21.p1k chr02 18 1242 562378 563593 F 1225 96.00 1362 accept 0 ALIGNMENT 1025 Y12-8c21.q1k chr02 1195 34 565293 566466 C 1162 97.16 1267 accept 0 ALIGNMENT 778 Y12-8d01.p1k chr14 25 1124 328370 329474 F 1100 91.36 1400 accept 0 ALIGNMENT 20 Y12-8d01.q1k chr02 92 36 780379 780435 C 57 85.96 1403 reject_low 2 ALIGNMENT 756 Y12-8d01.q1k chr14 1021 39 332304 333290 C 983 93.18 1403 accept 0 ALIGNMENT 0 Y12-8d01.q1k chr02 549 93 780380 780379 C 457 0.00 1403 reject_low 2 ALIGNMENT 20 Y12-8d01.q1k chr02 92 36 780322 780378 C 57 85.96 1403 reject_low 1 ALIGNMENT 0 Y12-8d01.q1k chr02 549 93 780323 780322 C 457 0.00 1403 reject_low 1 ALIGNMENT 0 Y12-8d02.p1k chr11 62 465 136099 136098 F 404 0.00 1370 reject_low 1 ALIGNMENT 703 Y12-8d02.p1k chr04 1048 13 1384903 1385954 C 1036 90.64 1370 accept 0 ALIGNMENT 23 Y12-8d02.p1k chr11 466 499 136099 136132 F 34 97.06 1370 reject_low 1 ALIGNMENT 209 Y12-8d02.q1k chr04 29 502 1382198 1382669 F 474 82.28 1357 accept 0 ALIGNMENT 78 Y12-8d03.q1k chr09 736 648 300226 300313 C 89 96.63 1331 reject_low 23 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 392044 392792 C 41 0.00 1435 manual 2 ALIGNMENT 0 Y12-8d03.p1k chr09 1009 1006 391999 392010 C 4 0.00 1435 reject_low 65,69 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 391792 392792 C 41 0.00 1435 reject_low 36 ALIGNMENT 26 Y12-8d03.p1k chr09 1039 1010 392175 392205 C 30 96.67 1435 reject_low 68 ALIGNMENT 0 Y12-8d03.p1k chr09 995 996 391724 392020 C 0 0.00 1435 reject_low 59 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 925 392251 392298 C 210 0.00 1435 reject_low 58 ALIGNMENT 0 Y12-8d03.p1k chr09 904 659 391000 390999 C 246 0.00 1435 reject_low 40 ALIGNMENT 0 Y12-8d03.p1k chr09 1157 1158 392345 392614 C 0 0.00 1435 reject_low 47 ALIGNMENT 0 Y12-8d03.p1k chr09 900 878 392359 392336 C 23 0.00 1435 reject_low 15 ALIGNMENT 0 Y12-8d03.p1k chr09 904 790 390995 390994 C 115 0.00 1435 reject_low 17 ALIGNMENT 0 Y12-8d03.p1k chr09 1089 1086 391918 391930 C 4 0.00 1435 reject_low 65 ALIGNMENT 0 Y12-8d03.p1k chr09 889 878 392172 392174 C 12 0.00 1435 reject_low 66 ALIGNMENT 21 Y12-8d03.p1k chr09 697 673 391518 391542 C 25 96.00 1435|11,0 reject_low 53,55 ALIGNMENT 74 Y12-8d03.q1k chr03 735 662 151281 151354 C 74 100.00 1331 reject_low 28 ALIGNMENT 0 Y12-8d03.q1k chr07 750 866 876484 876483 F 117 0.00 1331 reject_low 22 ALIGNMENT 271 Y12-8d03.p1k chr09 506 206 393032 393332 C 301 97.01 1435 manual 1,2,3,4,5,6,7 ALIGNMENT 0 Y12-8d03.p1k chr09 870 810 391039 391234 C 61 0.00 1435 reject_low 32 ALIGNMENT 59 Y12-8d03.p1k chr09 1165 1090 391842 391917 C 76 93.42 1435 reject_low 65 ALIGNMENT 0 Y12-8d03.p1k chr09 672 673 391147 391290 C 0 0.00 1435 reject_low 44 ALIGNMENT 90 Y12-8d03.p1k chr09 727 595 391650 391791 C 133 90.98 1435 reject_low 36 ALIGNMENT 0 Y12-8d03.p1k chr09 870 763 391039 391100 C 108 0.00 1435 reject_low 37 ALIGNMENT 0 Y12-8d03.q1k chr07 866 746 185712 185711 C 121 0.00 1331 reject_low 19 ALIGNMENT 0 Y12-8d03.p1k chr09 637 62 392172 392171 C 576 0.00 1435 reject_low 53 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391515 392792 C 21 0.00 1435 reject_low 9 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1123 392332 392334 C 12 0.00 1435 reject_low 63 ALIGNMENT 0 Y12-8d03.p1k chr09 927 554 392719 392792 C 374 0.00 1435 reject_low 11 ALIGNMENT 24 Y12-8d03.p1k chr09 622 595 392142 392169 C 28 96.43 1435 reject_low 52,55 ALIGNMENT 0 Y12-8d03.q1k chr13 660 62 480695 480694 C 599 0.00 1331 reject_low 27 ALIGNMENT 20 Y12-8d03.p1k chr09 949 926 391518 391541 C 24 95.83 1435 reject_low 52,53 ALIGNMENT 24 Y12-8d03.p1k chr09 1086 1054 392137 392169 C 33 90.91 1435 reject_low 57 ALIGNMENT 0 Y12-8d03.p1k chr09 506 190 392840 393303 C 317 0.00 1435 reject_low 8,9,10,11,12,13,14,15 ALIGNMENT 26 Y12-8d03.p1k chr09 910 871 390999 391038 C 40 90.00 1435 reject_low 9,10,32,33,34,35,36,37,38,42,44,51 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391893 392792 C 21 0.00 1435 manual 5 ALIGNMENT 293 Y12-8d03.p1k chr09 1155 575 391258 391847 C 581 86.57 1435 manual 6 ALIGNMENT 0 Y12-8d03.p1k chr09 718 62 392172 392171 C 657 0.00 1435 reject_low 69 ALIGNMENT 110 Y12-8d03.p1k chr09 1039 869 392049 392228 C 171 90.06 1435|0,5 reject_low 54 ALIGNMENT 167 Y12-8d03.p1k chr09 911 595 391259 391584 C 317 87.38 1435 reject_low 8 ALIGNMENT 74 Y12-8d03.q1k chr11 662 735 202644 202717 F 74 100.00 1331 reject_low 31 ALIGNMENT 24 Y12-8d03.p1k chr09 1167 1135 392218 392250 C 33 90.91 1435|10,0 reject_low 58 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 62 392557 392556 C 1073 0.00 1435 reject_low 39 ALIGNMENT 0 Y12-8d03.p1k chr09 506 62 392840 392839 C 445 0.00 1435 reject_low 16,17,18,32,33,34,35,36,37,38,42,44,45,48,49,50,51,54,59,64,65 ALIGNMENT 89 Y12-8d03.p1k chr09 703 595 392142 392250 C 109 95.41 1435 reject_low 48 ALIGNMENT 77 Y12-8d03.q1k chr16 650 735 582046 582131 F 86 96.51 1331 reject_low 24 ALIGNMENT 0 Y12-8d03.p1k chr09 925 925 392208 392298 C 1 0.00 1435 reject_low 49 ALIGNMENT 0 Y12-8d03.p1k chr09 870 728 391039 391649 C 143 0.00 1435 reject_low 36 ALIGNMENT 0 Y12-8d03.p1k chr09 870 637 391039 391100 C 234 0.00 1435 reject_low 38 ALIGNMENT 0 Y12-8d03.p1k chr09 844 797 392208 392336 C 48 0.00 1435 reject_low 66 ALIGNMENT 24 Y12-8d03.p1k chr09 1167 1135 392137 392169 C 33 90.91 1435|10,0 reject_low 61 ALIGNMENT 0 Y12-8d03.q1k chr04 62 660 1201738 1201737 F 599 0.00 1331 reject_low 25 ALIGNMENT 0 Y12-8d03.p1k chr09 927 923 392080 392093 C 5 0.00 1435 reject_low 48,59,64,65 ALIGNMENT 65 Y12-8d03.p1k chr09 762 575 391101 391298 C 188 81.38 1435 reject_low 37 ALIGNMENT 34 Y12-8d03.p1k chr09 1167 1115 392686 392738 C 53 88.68 1435|10,0 reject_low 46 ALIGNMENT 79 Y12-8d03.q1k chr04 661 739 1201738 1201816 F 79 100.00 1331 reject_low 25 ALIGNMENT 0 Y12-8d03.p1k chr09 506 507 392840 393031 C 0 0.00 1435 manual 1,2,3,4,5,6,7 ALIGNMENT 0 Y12-8d03.p1k chr09 889 749 392172 392177 C 141 0.00 1435 reject_low 14 ALIGNMENT 30 Y12-8d03.p1k chr09 960 928 392047 392079 C 33 96.97 1435|11,0 reject_low 48,59,64,65 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 1040 392251 392255 C 14 0.00 1435 reject_low 67 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391389 392792 C 21 0.00 1435 reject_low 44 ALIGNMENT 0 Y12-8d03.p1k chr09 1089 554 392719 392792 C 536 0.00 1435 reject_low 18 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 925 392044 392136 C 129 0.00 1435 reject_low 56 ALIGNMENT 0 Y12-8d03.p1k chr09 904 745 390995 390994 C 160 0.00 1435 reject_low 55 ALIGNMENT 0 Y12-8d03.q1k chr03 866 736 151282 151281 C 131 0.00 1331 reject_low 28 ALIGNMENT 99 Y12-8d03.p1k chr09 781 595 391434 391620 C 187 87.70 1435 reject_low 34 ALIGNMENT 0 Y12-8d03.p1k chr09 774 62 392359 392358 C 713 0.00 1435 reject_low 56,57,58,60,61,62,63,66,67,68 ALIGNMENT 0 Y12-8d03.p1k chr09 870 718 391039 391100 C 153 0.00 1435 reject_low 42,44,51 ALIGNMENT 0 Y12-8d03.q1k chr05 866 736 135426 135425 C 131 0.00 1331 reject_low 29 ALIGNMENT 0 Y12-8d03.p1k chr09 889 623 391587 392141 C 267 0.00 1435 reject_low 52 ALIGNMENT 139 Y12-8d03.p1k chr09 189 17 393304 393477 C 173 94.22 1435 reject_low 8,9,10,11,12,13,14,15 ALIGNMENT 0 Y12-8d03.p1k chr09 628 62 391029 391028 C 567 0.00 1435 reject_low 40 ALIGNMENT 0 Y12-8d03.p1k chr09 1007 1006 391830 392010 C 2 0.00 1435 reject_low 64,66 ALIGNMENT 23 Y12-8d03.p1k chr09 667 638 392142 392171 C 30 93.33 1435 reject_low 53 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 391963 392792 C 41 0.00 1435 reject_low 12 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1123 391621 392253 C 12 0.00 1435 reject_low 60 ALIGNMENT 0 Y12-8d03.p1k chr09 1114 62 392739 392738 C 1053 0.00 1435 reject_low 46 ALIGNMENT 0 Y12-8d03.q1k chr04 740 866 1201816 1201815 F 127 0.00 1331 reject_low 25 ALIGNMENT 0 Y12-8d03.p1k chr09 1087 749 392127 392141 C 339 0.00 1435 reject_low 45 ALIGNMENT 29 Y12-8d03.p1k chr09 1039 973 392256 392331 C 67 83.58 1435 reject_low 67 ALIGNMENT 204 Y12-8d03.p1k chr09 1122 823 392047 392355 C 300 91.00 1435|8,0 reject_low 13 ALIGNMENT 0 Y12-8d03.q1k chr03 661 62 151355 151354 C 600 0.00 1331 reject_low 28 ALIGNMENT 115 Y12-8d03.p1k chr09 1221 1008 392499 392720 C 214 86.92 1435 reject_low 16 ALIGNMENT 0 Y12-8d03.q1k chr05 866 736 435749 435748 C 131 0.00 1331 reject_low 30 ALIGNMENT 24 Y12-8d03.p1k chr09 924 890 392299 392333 C 35 88.57 1435 reject_low 49,57,58,61 ALIGNMENT 24 Y12-8d03.p1k chr09 1167 1135 392011 392043 C 33 90.91 1435|10,0 reject_low 62 ALIGNMENT 84 Y12-8d03.p1k chr09 1193 1065 392225 392356 C 129 89.92 1435 reject_low 50 ALIGNMENT 0 Y12-8d03.q1k chr13 866 736 480621 480620 C 131 0.00 1331 reject_low 27 ALIGNMENT 0 Y12-8d03.p1k chr09 1096 1040 392361 392336 C 57 0.00 1435 reject_low 63 ALIGNMENT 84 Y12-8d03.q1k chr04 746 648 1352446 1352543 C 99 95.96 1331 reject_low 21 ALIGNMENT 0 Y12-8d03.p1k chr09 925 698 391542 391517 C 228 0.00 1435 reject_low 53 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 62 392638 392637 C 1073 0.00 1435 reject_low 47 ALIGNMENT 24 Y12-8d03.p1k chr09 744 710 390994 391028 C 35 91.43 1435|0,5 reject_low 55 ALIGNMENT 81 Y12-8d03.p1k chr09 672 575 391669 391766 C 98 95.92 1435 reject_low 42 ALIGNMENT 0 Y12-8d03.p1k chr09 1157 1158 391940 392227 C 0 0.00 1435 reject_low 58 ALIGNMENT 0 Y12-8d03.p1k chr09 904 619 390995 390994 C 286 0.00 1435 reject_low 41 ALIGNMENT 0 Y12-8d03.p1k chr09 1064 961 392357 392334 C 104 0.00 1435 reject_low 50 ALIGNMENT 0 Y12-8d03.p1k chr09 1057 925 392121 392136 C 133 0.00 1435 reject_low 62 ALIGNMENT 0 Y12-8d03.q1k chr06 866 747 226666 226665 C 120 0.00 1331 reject_low 26 ALIGNMENT 0 Y12-8d03.p1k chr09 583 554 391200 392792 C 30 0.00 1435 reject_low 17 ALIGNMENT 0 Y12-8d03.p1k chr09 1009 961 392206 392334 C 49 0.00 1435 reject_low 68 ALIGNMENT 0 Y12-8d03.p1k chr09 1157 1158 391940 392020 C 0 0.00 1435 reject_low 62 ALIGNMENT 0 Y12-8d03.q1k chr09 866 737 300227 300226 C 130 0.00 1331 reject_low 23 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 1040 391792 391796 C 14 0.00 1435 reject_low 64,66 ALIGNMENT 0 Y12-8d03.q1k chr07 646 62 185809 185808 C 585 0.00 1331 reject_low 19 ALIGNMENT 0 Y12-8d03.q1k chr07 62 647 122258 122257 F 586 0.00 1331 reject_low 20 ALIGNMENT 0 Y12-8d03.p1k chr09 949 950 391725 392057 C 0 0.00 1435 reject_low 48 ALIGNMENT 26 Y12-8d03.p1k chr09 960 935 392335 392360 C 26 100.00 1435 reject_low 50,60,67,68 ALIGNMENT 82 Y12-8d03.p1k chr09 1122 1010 391588 391701 C 113 92.04 1435 reject_low 59 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 961 392332 392334 C 93 0.00 1435 reject_low 60 ALIGNMENT 25 Y12-8d03.p1k chr09 1122 1088 391966 392000 C 35 91.43 1435 reject_low 68 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391938 392792 C 21 0.00 1435 manual 4 ALIGNMENT 112 Y12-8d03.p1k chr09 809 575 391235 391469 C 235 85.96 1435 reject_low 32 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391299 392792 C 21 0.00 1435 reject_low 37 ALIGNMENT 0 Y12-8d03.q1k chr11 736 866 202717 202716 F 131 0.00 1331 reject_low 31 ALIGNMENT 0 Y12-8d03.p1k chr09 895 749 392121 392141 C 147 0.00 1435 reject_low 59,64,65,69 ALIGNMENT 23 Y12-8d03.p1k chr09 1122 1097 392335 392360 C 26 96.15 1435 reject_low 63 ALIGNMENT 0 Y12-8d03.q1k chr05 661 62 135499 135498 C 600 0.00 1331 reject_low 29 ALIGNMENT 0 Y12-8d03.p1k chr09 1157 1158 391940 392146 C 0 0.00 1435 reject_low 61 ALIGNMENT 89 Y12-8d03.p1k chr09 807 575 391101 391343 C 233 82.40 1435 reject_low 35 ALIGNMENT 0 Y12-8d03.p1k chr09 1087 1087 392208 392217 C 1 0.00 1435 reject_low 67 ALIGNMENT 21 Y12-8d03.p1k chr09 1084 1058 392094 392120 C 27 92.59 1435 reject_low 62 ALIGNMENT 0 Y12-8d03.q1k chr04 866 747 1352447 1352446 C 120 0.00 1331 reject_low 21 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391344 392792 C 21 0.00 1435 reject_low 35 ALIGNMENT 41 Y12-8d03.p1k chr09 1193 1106 391766 391856 C 88 84.09 1435|0,9 reject_low 11,13 ALIGNMENT 28 Y12-8d03.p1k chr09 1122 1088 392254 392288 C 35 94.29 1435 reject_low 60 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 925 392170 392298 C 129 0.00 1435 reject_low 57 ALIGNMENT 310 Y12-8d03.p1k chr09 1166 575 391337 391937 C 592 87.16 1435 manual 4 ALIGNMENT 308 Y12-8d03.p1k chr09 1193 554 392144 392759 C 640 86.72 1435 manual 1 ALIGNMENT 74 Y12-8d03.q1k chr05 735 662 135425 135498 C 74 100.00 1331 reject_low 29 ALIGNMENT 24 Y12-8d03.p1k chr09 1167 1135 391759 391791 C 33 90.91 1435 reject_low 56 ALIGNMENT 57 Y12-8d03.p1k chr09 1167 1088 391669 391748 C 80 91.25 1435 reject_low 64 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391560 392792 C 21 0.00 1435 reject_low 10 ALIGNMENT 0 Y12-8d03.p1k chr09 870 832 391039 391257 C 39 0.00 1435 reject_low 9 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1087 391621 391758 C 48 0.00 1435 reject_low 66 ALIGNMENT 0 Y12-8d03.p1k chr09 672 623 391543 392141 C 50 0.00 1435 reject_low 55 ALIGNMENT 120 Y12-8d03.p1k chr09 1193 926 391937 392207 C 268 85.07 1435 reject_low 49 ALIGNMENT 166 Y12-8d03.p1k chr09 843 575 391291 391559 C 269 90.33 1435 reject_low 10 ALIGNMENT 0 Y12-8d03.p1k chr09 870 782 391039 391433 C 89 0.00 1435 reject_low 34 ALIGNMENT 78 Y12-8d03.p1k chr09 672 575 391291 391388 C 98 94.90 1435 reject_low 44 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 899 391621 391649 C 236 0.00 1435 reject_low 12 ALIGNMENT 49 Y12-8d03.p1k chr09 1193 1088 392018 392126 C 106 83.96 1435 reject_low 45 ALIGNMENT 0 Y12-8d03.q1k chr06 662 62 226748 226747 C 601 0.00 1331 reject_low 26 ALIGNMENT 0 Y12-8d03.p1k chr09 853 797 392361 392336 C 57 0.00 1435 reject_low 15,49,50,54,56,57,58,60,61,62,63,67,68 ALIGNMENT 0 Y12-8d03.q1k chr11 62 661 202644 202643 F 600 0.00 1331 reject_low 31 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 391585 392792 C 41 0.00 1435 reject_low 8 ALIGNMENT 0 Y12-8d03.p1k chr09 895 704 392121 392141 C 192 0.00 1435 reject_low 48 ALIGNMENT 118 Y12-8d03.p1k chr09 1167 938 391507 391736 C 230 87.39 1435|0,12 reject_low 48 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 391621 392792 C 41 0.00 1435 reject_low 34 ALIGNMENT 0 Y12-8d03.p1k chr09 925 925 392127 392136 C 1 0.00 1435 reject_low 14 ALIGNMENT 0 Y12-8d03.q1k chr16 62 649 582046 582045 F 588 0.00 1331 reject_low 24 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 1040 391963 391967 C 14 0.00 1435 reject_low 65,69 ALIGNMENT 0 Y12-8d03.p1k chr09 1048 62 392724 392723 C 987 0.00 1435 reject_low 43 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391767 392792 C 21 0.00 1435 reject_low 42 ALIGNMENT 0 Y12-8d03.p1k chr09 822 797 392356 392336 C 26 0.00 1435 reject_low 13 ALIGNMENT 24 Y12-8d03.p1k chr09 719 676 391235 391278 C 44 86.36 1435|5,11 reject_low 55 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 392332 392792 C 41 0.00 1435 reject_low 14 ALIGNMENT 20 Y12-8d03.p1k chr09 1085 1054 391931 391962 C 32 87.50 1435 reject_low 65,69 ALIGNMENT 89 Y12-8d03.q1k chr07 648 746 122258 122356 F 99 96.97 1331 reject_low 20 ALIGNMENT 28 Y12-8d03.p1k chr09 1122 1049 392641 392723 C 74 81.08 1435 reject_low 43 ALIGNMENT 24 Y12-8d03.p1k chr09 924 890 392137 392171 C 35 88.57 1435 reject_low 14,56,62,66 ALIGNMENT 0 Y12-8d03.p1k chr09 972 961 392044 392046 C 12 0.00 1435 reject_low 59,64,65 ALIGNMENT 0 Y12-8d03.p1k chr09 934 878 392361 392336 C 57 0.00 1435 reject_low 50,60,67,68 ALIGNMENT 0 Y12-8d03.q1k chr16 736 866 582131 582130 F 131 0.00 1331 reject_low 24 ALIGNMENT 0 Y12-8d03.p1k chr09 1157 1158 392345 392695 C 0 0.00 1435 reject_low 46 ALIGNMENT 25 Y12-8d03.p1k chr09 1193 1135 391559 391620 C 59 83.05 1435 reject_low 12,60,66,67,68,69 ALIGNMENT 0 Y12-8d03.p1k chr09 718 628 392172 392172 C 91 0.00 1435 reject_low 45,59,64,65 ALIGNMENT 69 Y12-8d03.q1k chr06 746 663 226665 226747 C 84 95.24 1331 reject_low 26 ALIGNMENT 25 Y12-8d03.p1k chr09 1193 1135 392495 392556 C 59 83.05 1435 reject_low 39 ALIGNMENT 24 Y12-8d03.p1k chr09 1086 1054 391759 391791 C 33 90.91 1435 reject_low 54,64,66 ALIGNMENT 0 Y12-8d03.p1k chr09 1087 1087 392289 392298 C 1 0.00 1435 reject_low 60 ALIGNMENT 50 Y12-8d03.p1k chr09 636 576 391101 391162 C 61 96.72 1435 reject_low 38 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 1040 391792 392048 C 14 0.00 1435 reject_low 54 ALIGNMENT 23 Y12-8d03.p1k chr09 1193 1147 392306 392355 C 47 85.11 1435|0,11 reject_low 46,47 ALIGNMENT 24 Y12-8d03.p1k chr09 924 890 391552 391586 C 35 88.57 1435 reject_low 52 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 392226 392792 C 21 0.00 1435 reject_low 45,59,64,65 ALIGNMENT 0 Y12-8d03.p1k chr09 672 668 391543 392141 C 5 0.00 1435 reject_low 53 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391470 392792 C 21 0.00 1435 reject_low 32 ALIGNMENT 27 Y12-8d03.p1k chr09 1005 973 392011 392043 C 33 93.94 1435|10,0 reject_low 59,64,65,66,69 ALIGNMENT 0 Y12-8d03.p1k chr09 575 554 391163 392792 C 22 0.00 1435 reject_low 38 ALIGNMENT 74 Y12-8d03.q1k chr05 735 662 435748 435821 C 74 100.00 1331 reject_low 30 ALIGNMENT 44 Y12-8d03.p1k chr09 627 575 392173 392225 C 53 96.23 1435 reject_low 45,59,64,65 ALIGNMENT 273 Y12-8d03.p1k chr09 993 575 391258 391676 C 419 90.93 1435 manual 7 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1087 392170 392217 C 48 0.00 1435 reject_low 61 ALIGNMENT 0 Y12-8d03.p1k chr09 205 62 393333 393332 C 144 0.00 1435 manual 1,2,3,4,5,6,7 ALIGNMENT 0 Y12-8d03.p1k chr09 870 808 391039 391100 C 63 0.00 1435 reject_low 35 ALIGNMENT 0 Y12-8d03.p1k chr09 1009 1006 391702 391713 C 4 0.00 1435 reject_low 59 ALIGNMENT 0 Y12-8d03.p1k chr09 870 765 391039 391234 C 106 0.00 1435 reject_low 33 ALIGNMENT 200 Y12-8d03.p1k chr09 831 575 391258 391514 C 257 94.55 1435 reject_low 9 ALIGNMENT 0 Y12-8d03.p1k chr09 1016 878 392360 392336 C 139 0.00 1435 reject_low 63 ALIGNMENT 21 Y12-8d03.p1k chr09 1005 985 391714 391734 C 21 100.00 1435|0,11 reject_low 59 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 392251 392792 C 41 0.00 1435 reject_low 48 ALIGNMENT 26 Y12-8d03.p1k chr09 748 719 392142 392171 C 30 96.67 1435 reject_low 45,59,64,65,69 ALIGNMENT 64 Y12-8d03.p1k chr09 646 575 391650 391721 C 72 98.61 1435|9,0 reject_low 51 ALIGNMENT 0 Y12-8d03.p1k chr09 972 925 392044 392136 C 48 0.00 1435 reject_low 66 ALIGNMENT 24 Y12-8d03.p1k chr09 877 854 392337 392360 C 24 100.00 1435|4,0 reject_low 15,49,50,54,56,57,58,60,61,62,63,67,68 ALIGNMENT 0 Y12-8d03.p1k chr09 553 554 392760 392792 C 0 0.00 1435 manual 1 ALIGNMENT 0 Y12-8d03.p1k chr09 873 874 392224 392340 C 0 0.00 1435 reject_low 54 ALIGNMENT 0 Y12-8d03.q1k chr04 647 62 1352544 1352543 C 586 0.00 1331 reject_low 21 ALIGNMENT 75 Y12-8d03.q1k chr13 735 661 480620 480694 C 75 100.00 1331 reject_low 27 ALIGNMENT 0 Y12-8d03.p1k chr09 594 62 391018 391017 C 533 0.00 1435 reject_low 41 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 392307 392792 C 21 0.00 1435 manual 3 ALIGNMENT 0 Y12-8d03.p1k chr09 672 673 391147 391668 C 0 0.00 1435 reject_low 42 ALIGNMENT 962 Y12-8d03.q1k chr10 34 1169 414252 415402 F 1136 96.39 1331 accept_chi 0 ALIGNMENT 31 Y12-8d03.p1k chr09 717 672 391101 391147 C 46 91.30 1435|0,1 reject_low 42,44,51 ALIGNMENT 24 Y12-8d03.p1k chr09 1167 1135 392605 392637 C 33 90.91 1435|10,0 reject_low 47 ALIGNMENT 0 Y12-8d03.p1k chr09 972 923 392044 392093 C 50 0.00 1435 reject_low 69 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391848 392792 C 21 0.00 1435 manual 6 ALIGNMENT 77 Y12-8d03.q1k chr07 661 749 876397 876484 F 89 96.63 1331 reject_low 22 ALIGNMENT 0 Y12-8d03.q1k chr07 62 660 876397 876396 F 599 0.00 1331 reject_low 22 ALIGNMENT 0 Y12-8d03.p1k chr09 1087 1087 391749 391758 C 1 0.00 1435 reject_low 64 ALIGNMENT 0 Y12-8d03.p1k chr09 889 878 392172 392336 C 12 0.00 1435 reject_low 56,62 ALIGNMENT 29 Y12-8d03.p1k chr09 877 845 392175 392207 C 33 96.97 1435 reject_low 66 ALIGNMENT 27 Y12-8d03.p1k chr09 1122 1090 391795 391827 C 33 93.94 1435 reject_low 69 ALIGNMENT 39 Y12-8d03.p1k chr09 553 507 392793 392839 C 47 97.87 1435 manual 1,2,3,4,5,6,7 reject_low 8,9,10,11,12,13,14,15,16,17,18,32,33,34,35,36,37,38,42,44,45,48,49,50,51,54,59,64,65 ALIGNMENT 0 Y12-8d03.p1k chr09 1129 1123 392481 392640 C 7 0.00 1435 reject_low 43 ALIGNMENT 0 Y12-8d03.q1k chr07 747 866 122356 122355 F 120 0.00 1331 reject_low 20 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1123 391621 392172 C 12 0.00 1435 reject_low 67 ALIGNMENT 22 Y12-8d03.p1k chr09 796 775 392337 392358 C 22 100.00 1435 reject_low 13,15,49,50,54,56,57,58,60,61,62,63,66,67,68 ALIGNMENT 0 Y12-8d03.p1k chr09 972 961 392332 392334 C 12 0.00 1435 reject_low 67 ALIGNMENT 0 Y12-8d03.q1k chr05 661 62 435822 435821 C 600 0.00 1331 reject_low 30 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1123 391621 391965 C 12 0.00 1435 reject_low 68 ALIGNMENT 23 Y12-8d03.p1k chr09 658 629 390999 391028 C 30 93.33 1435 reject_low 40 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391722 392792 C 21 0.00 1435 reject_low 51 ALIGNMENT 141 Y12-8d03.p1k chr09 898 595 391650 391962 C 304 85.53 1435 reject_low 12 ALIGNMENT 161 Y12-8d03.p1k chr09 1167 926 391885 392126 C 242 90.50 1435 reject_low 14 ALIGNMENT 23 Y12-8d03.p1k chr09 1039 1017 392337 392359 C 23 100.00 1435 reject_low 63 ALIGNMENT 355 Y12-8d03.p1k chr09 1167 595 391462 392043 C 573 89.88 1435 manual 2 ALIGNMENT 132 Y12-8d03.p1k chr09 748 595 392178 392331 C 154 96.75 1435 reject_low 14 ALIGNMENT 23 Y12-8d03.p1k chr09 1039 1010 391968 391998 C 30 93.33 1435 reject_low 65,69 ALIGNMENT 0 Y12-8d03.p1k chr09 1007 554 392721 392792 C 454 0.00 1435 reject_low 16 ALIGNMENT 0 Y12-8d03.p1k chr09 1146 1087 391951 392136 C 60 0.00 1435 reject_low 57 ALIGNMENT 0 Y12-8d03.p1k chr09 574 554 391677 392792 C 21 0.00 1435 manual 7 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 925 392251 392298 C 129 0.00 1435 reject_low 61 ALIGNMENT 24 Y12-8d03.p1k chr09 1086 1054 392218 392250 C 33 90.91 1435 reject_low 61,67 ALIGNMENT 0 Y12-8d03.p1k chr09 889 878 392334 392336 C 12 0.00 1435 reject_low 49,57,58,61 ALIGNMENT 0 Y12-8d03.p1k chr09 1114 1115 391848 392054 C 0 0.00 1435 reject_low 13 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1085 392044 392093 C 50 0.00 1435 reject_low 62 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1087 391792 392010 C 48 0.00 1435 reject_low 56 ALIGNMENT 0 Y12-8d03.p1k chr09 1089 1086 391828 391930 C 4 0.00 1435 reject_low 69 ALIGNMENT 0 Y12-8d03.p1k chr09 1114 1115 391848 392531 C 0 0.00 1435 reject_low 11 ALIGNMENT 57 Y12-8d03.p1k chr09 1193 1090 392612 392718 C 104 86.54 1435 reject_low 18 ALIGNMENT 0 Y12-8d03.p1k chr09 594 554 391414 392792 C 41 0.00 1435 reject_low 33 ALIGNMENT 24 Y12-8d03.p1k chr09 1086 1054 392011 392043 C 33 90.91 1435 reject_low 56,68 ALIGNMENT 0 Y12-8d03.p1k chr09 870 844 391039 391290 C 27 0.00 1435 reject_low 10 ALIGNMENT 0 Y12-8d03.q1k chr09 647 62 300314 300313 C 586 0.00 1331 reject_low 23 ALIGNMENT 28 Y12-8d03.p1k chr09 1039 1008 391797 391829 C 32 96.88 1435 reject_low 64,66 ALIGNMENT 0 Y12-8d03.p1k chr09 1134 1123 391621 391794 C 12 0.00 1435 reject_low 69 ALIGNMENT 20 Y12-8d03.p1k chr09 922 896 392094 392120 C 27 88.89 1435 reject_low 48,59,64,65,69 ALIGNMENT 143 Y12-8d03.p1k chr09 1122 928 392524 392718 C 195 92.82 1435|8,0 reject_low 11 ALIGNMENT 0 Y12-8d03.p1k chr09 1087 1087 392001 392010 C 1 0.00 1435 reject_low 68 ALIGNMENT 24 Y12-8d03.p1k chr09 1167 1135 392299 392331 C 33 90.91 1435|10,0 reject_low 63 ALIGNMENT 0 Y12-8d03.p1k chr09 1087 1087 391704 391758 C 1 0.00 1435 reject_low 54 ALIGNMENT 0 Y12-8d03.p1k chr09 637 638 391191 391658 C 0 0.00 1435 reject_low 51 ALIGNMENT 24 Y12-8d03.p1k chr09 1086 1054 392299 392331 C 33 90.91 1435 reject_low 60 ALIGNMENT 31 Y12-8d03.p1k chr09 1221 1130 392382 392480 C 92 81.52 1435 reject_low 43 ALIGNMENT 87 Y12-8d03.q1k chr07 745 647 185711 185808 C 99 96.97 1331 reject_low 19 ALIGNMENT 106 Y12-8d03.p1k chr09 764 595 391235 391413 C 170 89.41 1435 reject_low 33 ALIGNMENT 310 Y12-8d03.p1k chr09 1167 575 391291 391892 C 593 87.35 1435 manual 5 ALIGNMENT 342 Y12-8d03.p1k chr09 1167 575 391714 392306 C 593 88.70 1435 manual 3 ALIGNMENT 0 Y12-8d03.p1k chr09 594 62 392170 392169 C 533 0.00 1435 reject_low 52,55 ALIGNMENT 21 Y12-8d03.p1k chr09 618 595 390994 391017 C 24 95.83 1435 reject_low 41 ALIGNMENT 0 Y12-8d03.p1k chr09 1053 1040 392044 392174 C 14 0.00 1435 reject_low 68 ALIGNMENT 0 Y12-8d03.p1k chr09 774 554 392359 392792 C 221 0.00 1435 reject_low 13,15,49,50,54 ALIGNMENT 63 Y12-8d03.p1k chr09 1221 1088 391563 391703 C 134 85.07 1435 reject_low 54 ALIGNMENT 28 Y12-8d03.p1k chr09 1122 1088 392173 392207 C 35 94.29 1435 reject_low 67 ALIGNMENT 0 Y12-8d03.p1k chr09 1157 1158 391940 392308 C 0 0.00 1435 reject_low 63 ALIGNMENT 0 Y12-8d03.p1k chr09 1156 1157 391941 392102 C 0 0.00 1435 reject_low 15 ALIGNMENT 81 Y12-8d03.p1k chr09 789 584 390994 391199 C 206 81.55 1435 reject_low 17 ALIGNMENT 197 Y12-8d03.p1k chr09 1165 901 392094 392358 C 265 92.83 1435|9,0 reject_low 15 ALIGNMENT 0 Y12-8d03.p1k chr09 671 672 391148 391156 C 0 0.00 1435 reject_low 51 ALIGNMENT 0 Y12-8d03.p1k chr09 714 715 391024 391239 C 0 0.00 1435 reject_low 55 ALIGNMENT 0 Y12-8d03.p1k chr09 686 687 391268 391528 C 0 0.00 1435 reject_low 55 ALIGNMENT 20 Y12-8d03.p1k chr09 1166 1147 391931 391950 C 20 100.00 1435|0,11 reject_low 15,57,58,61,62,63 ALIGNMENT 0 Y12-8d03.p1k chr09 925 925 391542 391551 C 1 0.00 1435 reject_low 52 ALIGNMENT 23 Y12-8d03.p1k chr09 671 629 391157 391199 C 43 86.05 1435|0,9 reject_low 51 ALIGNMENT 940 Y12-8d04.q1k chr09 29 1170 352654 353780 F 1142 95.88 1362 accept 0 ALIGNMENT 951 Y12-8d04.p1k chr09 1183 24 355590 356776 C 1160 96.21 1449 accept 0 ALIGNMENT 952 Y12-8d05.q1k chr11 36 1137 553520 554619 F 1102 96.73 1396 accept 0 ALIGNMENT 988 Y12-8d05.p1k chr11 1184 21 556155 557327 C 1164 96.56 1401 accept 0 ALIGNMENT 25 Y12-8d06.q1k chr08 970 1001 420592 420623 F 32 96.88 1382 reject_low 1 ALIGNMENT 1005 Y12-8d06.q1k chr04 34 1214 585605 586794 F 1181 96.27 1382 accept 0 ALIGNMENT 0 Y12-8d06.q1k chr08 62 969 420592 420591 F 908 0.00 1382 reject_low 1 ALIGNMENT 982 Y12-8d06.p1k chr04 1095 19 590333 591409 C 1077 97.86 1375 accept 0 ALIGNMENT 470 Y12-8d07.q1k chr04 583 1228 1212613 1213266 F 646 92.57 1411|3,0 accept 0 ALIGNMENT 0 Y12-8d07.q1k chr04 586 585 1206693 1212615 F 0 0.00 1411 accept 0 ALIGNMENT 977 Y12-8d07.p1k chr04 1183 23 1216851 1218020 C 1161 96.47 1446 accept 0 ALIGNMENT 516 Y12-8d07.q1k chr04 32 587 1206138 1206694 F 556 98.74 1411|0,2 accept 0 ALIGNMENT 983 Y12-8d08.p1k chr16 1142 19 904312 905449 C 1124 97.06 1429 accept 0 ALIGNMENT 937 Y12-8d08.q1k chr16 33 1116 899650 900740 F 1084 96.03 1387 accept 0 ALIGNMENT 1001 Y12-8d09.p1k chr15 1127 20 442967 444084 C 1108 97.74 1423 accept 0 ALIGNMENT 979 Y12-8d09.q1k chr15 32 1191 439943 441116 F 1160 96.03 1337 accept 0 ALIGNMENT 1000 Y12-8d10.q1k chr07 35 1187 233105 234270 F 1153 96.53 1338 accept 0 ALIGNMENT 988 Y12-8d10.p1k chr07 1285 17 236075 237356 C 1269 93.70 1442 accept 0 ALIGNMENT 0 Y12-8d11.q1k chr02 629 867 405947 405946 F 239 0.00 1379 reject_low 14 ALIGNMENT 77 Y12-8d11.q1k chr07 551 630 736343 736422 F 80 98.75 1379 reject_low 20 ALIGNMENT 0 Y12-8d11.q1k chr10 541 62 374505 374504 C 480 0.00 1379 reject_low 15 ALIGNMENT 0 Y12-8d11.q1k chr10 254 541 354756 355278 F 288 0.00 1379 reject_low 27 ALIGNMENT 0 Y12-8d11.q1k chr07 867 280 401963 401962 C 588 0.00 1379 reject_low 3 ALIGNMENT 0 Y12-8d11.q1k chr04 62 542 568869 568868 F 481 0.00 1379 reject_low 18 ALIGNMENT 0 Y12-8d11.q1k chr15 867 281 594513 594512 C 587 0.00 1379 reject_low 22 ALIGNMENT 122 Y12-8d11.q1k chr07 279 35 401962 402200 C 245 86.53 1379 reject_low 3 ALIGNMENT 80 Y12-8d11.q1k chr04 543 628 568869 568954 F 86 97.67 1379 reject_low 18 ALIGNMENT 0 Y12-8d11.q1k chr06 209 62 137979 137978 C 148 0.00 1379 reject_low 25 ALIGNMENT 0 Y12-8d11.q1k chr07 534 62 828818 828817 C 473 0.00 1379 reject_low 2 ALIGNMENT 0 Y12-8d11.q1k chr13 867 629 131822 131821 C 239 0.00 1379 reject_low 21 ALIGNMENT 0 Y12-8d11.q1k chr02 867 280 265162 265161 C 588 0.00 1379 reject_low 8 ALIGNMENT 0 Y12-8d11.q1k chr15 867 280 600404 600403 C 588 0.00 1379 reject_low 6 ALIGNMENT 0 Y12-8d11.q1k chr15 867 280 594822 594821 C 588 0.00 1379 reject_low 5 ALIGNMENT 972 Y12-8d11.q1k chr11 1262 35 161843 163080 C 1228 94.95 1379 accept 0 ALIGNMENT 62 Y12-8d11.q1k chr06 198 35 137725 137880 C 164 83.54 1379 reject_low 28 ALIGNMENT 76 Y12-8d11.q1k chr13 628 550 131821 131899 C 79 98.73 1379 reject_low 21 ALIGNMENT 106 Y12-8d11.p1k chr08 225 24 199946 200146 C 202 85.15 1406 reject_low 1 ALIGNMENT 0 Y12-8d11.q1k chr08 281 867 116748 116747 F 587 0.00 1379 reject_low 11 ALIGNMENT 0 Y12-8d11.q1k chr07 631 867 405550 405549 F 237 0.00 1379 reject_low 16 ALIGNMENT 78 Y12-8d11.q1k chr10 35 253 354543 354755 F 219 82.19 1379 reject_low 27 ALIGNMENT 0 Y12-8d11.q1k chr12 280 867 593037 593036 F 588 0.00 1379 reject_low 24 ALIGNMENT 0 Y12-8d11.q1k chr02 867 280 259577 259576 C 588 0.00 1379 reject_low 7 ALIGNMENT 80 Y12-8d11.q1k chr07 542 630 405462 405550 F 89 96.63 1379 reject_low 16 ALIGNMENT 0 Y12-8d11.p1k chr08 861 226 199947 199946 C 636 0.00 1406 reject_low 1 ALIGNMENT 0 Y12-8d11.q1k chr07 631 867 736422 736421 F 237 0.00 1379 reject_low 20 ALIGNMENT 0 Y12-8d11.q1k chr05 631 867 138743 138742 F 237 0.00 1379 reject_low 19 ALIGNMENT 93 Y12-8d11.q1k chr15 280 35 594512 594750 C 246 82.52 1379 reject_low 22 ALIGNMENT 0 Y12-8d11.q1k chr13 271 867 463444 463443 F 597 0.00 1379 reject_low 23 ALIGNMENT 122 Y12-8d11.q1k chr07 35 279 823073 823311 F 245 86.53 1379 reject_low 4 ALIGNMENT 84 Y12-8d11.q1k chr12 35 279 592800 593037 F 245 81.63 1379 reject_low 24 ALIGNMENT 81 Y12-8d11.q1k chr13 631 551 747884 747964 C 81 100.00 1379 reject_low 17 ALIGNMENT 119 Y12-8d11.q1k chr02 279 37 221040 221276 C 243 86.42 1379 reject_low 9 ALIGNMENT 31 Y12-8d11.q1k chr06 279 210 137908 137978 C 70 84.29 1379 reject_low 25 ALIGNMENT 0 Y12-8d11.q1k chr02 867 280 221041 221040 C 588 0.00 1379 reject_low 9 ALIGNMENT 0 Y12-8d11.q1k chr05 62 552 138666 138665 F 491 0.00 1379 reject_low 19 ALIGNMENT 0 Y12-8d11.q1k chr07 867 631 828723 828722 C 237 0.00 1379 reject_low 2 ALIGNMENT 122 Y12-8d11.q1k chr15 279 35 594821 595059 C 245 86.53 1379 reject_low 5 ALIGNMENT 0 Y12-8d11.q1k chr13 867 632 747885 747884 C 236 0.00 1379 reject_low 17 ALIGNMENT 122 Y12-8d11.q1k chr15 279 35 600403 600641 C 245 86.53 1379 reject_low 6 ALIGNMENT 0 Y12-8d11.q1k chr07 867 280 114944 114943 C 588 0.00 1379 reject_low 13 ALIGNMENT 0 Y12-8d11.q1k chr04 629 867 568954 568953 F 239 0.00 1379 reject_low 18 ALIGNMENT 0 Y12-8d11.q1k chr10 62 115 354934 354933 F 54 0.00 1379 reject_low 26 ALIGNMENT 0 Y12-8d11.q1k chr02 62 541 405861 405860 F 480 0.00 1379 reject_low 14 ALIGNMENT 117 Y12-8d11.q1k chr08 35 280 116509 116748 F 246 85.77 1379 reject_low 11 ALIGNMENT 972 Y12-8d11.p1k chr11 18 1133 156815 157948 F 1116 96.77 1406 accept 0 ALIGNMENT 0 Y12-8d11.q1k chr10 867 629 374419 374418 C 239 0.00 1379 reject_low 15 ALIGNMENT 0 Y12-8d11.q1k chr02 867 280 226625 226624 C 588 0.00 1379 reject_low 10 ALIGNMENT 117 Y12-8d11.q1k chr11 43 280 457884 458115 F 238 86.55 1379 reject_low 12 ALIGNMENT 0 Y12-8d11.q1k chr06 867 280 137909 137908 C 588 0.00 1379 reject_low 25 ALIGNMENT 0 Y12-8d11.q1k chr10 629 867 355365 355364 F 239 0.00 1379 reject_low 27 ALIGNMENT 89 Y12-8d11.q1k chr13 35 270 463217 463444 F 236 83.05 1379 reject_low 23 ALIGNMENT 81 Y12-8d11.q1k chr07 630 535 828722 828817 C 96 94.79 1379 reject_low 2 ALIGNMENT 29 Y12-8d11.q1k chr10 116 279 354934 355091 F 164 77.44 1379 reject_low 26 ALIGNMENT 0 Y12-8d11.q1k chr13 549 62 131900 131899 C 488 0.00 1379 reject_low 21 ALIGNMENT 0 Y12-8d11.q1k chr06 237 199 137698 137724 C 39 0.00 1379 reject_low 28 ALIGNMENT 0 Y12-8d11.q1k chr13 550 62 747965 747964 C 489 0.00 1379 reject_low 17 ALIGNMENT 0 Y12-8d11.q1k chr07 62 550 736343 736342 F 489 0.00 1379 reject_low 20 ALIGNMENT 21 Y12-8d11.q1k chr06 276 238 137658 137697 C 39 87.18 1379 reject_low 28 ALIGNMENT 0 Y12-8d11.q1k chr10 280 867 355091 355090 F 588 0.00 1379 reject_low 26 ALIGNMENT 119 Y12-8d11.q1k chr02 279 35 265161 265399 C 245 86.12 1379 reject_low 8 ALIGNMENT 0 Y12-8d11.q1k chr11 281 867 458115 458114 F 587 0.00 1379 reject_low 12 ALIGNMENT 0 Y12-8d11.q1k chr07 280 867 823311 823310 F 588 0.00 1379 reject_low 4 ALIGNMENT 116 Y12-8d11.q1k chr07 279 35 114943 115180 C 245 85.71 1379 reject_low 13 ALIGNMENT 0 Y12-8d11.q1k chr07 62 541 405462 405461 F 480 0.00 1379 reject_low 16 ALIGNMENT 78 Y12-8d11.q1k chr05 553 630 138666 138743 F 78 100.00 1379 reject_low 19 ALIGNMENT 119 Y12-8d11.q1k chr02 279 37 226624 226860 C 243 86.42 1379 reject_low 10 ALIGNMENT 81 Y12-8d11.q1k chr10 628 542 374418 374504 C 87 97.70 1379 reject_low 15 ALIGNMENT 78 Y12-8d11.q1k chr10 542 628 355279 355365 F 87 96.55 1379 reject_low 27 ALIGNMENT 81 Y12-8d11.q1k chr02 542 628 405861 405947 F 87 97.70 1379 reject_low 14 ALIGNMENT 0 Y12-8d11.q1k chr06 867 277 137659 137658 C 591 0.00 1379 reject_low 28 ALIGNMENT 119 Y12-8d11.q1k chr02 279 35 259576 259814 C 245 86.12 1379 reject_low 7 ALIGNMENT 1027 Y12-8d12.p1k chr03 1219 18 170370 171583 C 1202 95.84 1419 accept 0 ALIGNMENT 947 Y12-8d12.q1k chr03 35 1154 165688 166823 F 1120 96.25 1356 accept 0 ALIGNMENT 952 Y12-8d13.q1k chr05 33 1235 259024 260228 F 1203 94.68 1330 accept_chi 1 ALIGNMENT 993 Y12-8d13.p1k chr10 1224 24 75186 76402 C 1201 95.67 1396 accept_chi 0 ALIGNMENT 954 Y12-8d14.q1k chr04 1200 35 1039527 1040711 C 1166 95.88 1310 accept 0 ALIGNMENT 1020 Y12-8d14.p1k chr04 26 1241 1036178 1037411 F 1216 95.72 1409 accept 0 ALIGNMENT 1025 Y12-8d15.p1k chr05 17 1125 85144 86265 F 1109 97.93 1354 accept 0 ALIGNMENT 1000 Y12-8d15.q1k chr05 1218 36 88991 90177 C 1183 95.69 1313 accept 0 ALIGNMENT 0 Y12-8d15.p1k chr10 547 62 525296 525295 C 486 0.00 1354 reject_low 1 ALIGNMENT 341 Y12-8d15.p1k chr10 1002 548 524841 525295 C 455 91.65 1354 reject_low 1 ALIGNMENT 177 Y12-8d16.p1k chr13 22 229 768878 769087 F 208 96.63 1393 accept 0 ALIGNMENT 858 Y12-8d16.q1k chr13 1210 43 772289 773445 C 1168 91.27 1324 accept 0 ALIGNMENT 0 Y12-8d16.p1k chr13 230 230 769088 769147 F 1 0.00 1393 accept 0 ALIGNMENT 751 Y12-8d16.p1k chr13 231 1207 769148 770144 F 977 93.35 1393 accept 0 ALIGNMENT 343 Y12-8d17.p1k chr08 334 1041 556109 556820 F 708 86.44 1386 ambiguous_tel 20 ALIGNMENT 519 Y12-8d17.p1k chr03 139 1075 315589 316515 F 937 88.26 1386 ambiguous_tel 10 ALIGNMENT 520 Y12-8d17.p1k chr12 1073 30 11362 12386 C 1044 86.97 1386 ambiguous_tel 8 ALIGNMENT 112 Y12-8d17.p1k chr11 30 190 665387 665548 F 161 90.68 1386 ambiguous_tel 21 ALIGNMENT 637 Y12-8d17.p1k chr09 877 20 7242 8095 C 858 93.71 1386 ambiguous_tel 2 ALIGNMENT 0 Y12-8d17.p1k chr05 62 183 569450 569449 F 122 0.00 1386 ambiguous_tel 13 ALIGNMENT 0 Y12-8d17.p1k chr10 62 277 744767 744766 F 216 0.00 1386 ambiguous_tel 15 ALIGNMENT 0 Y12-8d17.p1k chr14 278 62 7479 7478 C 217 0.00 1386 ambiguous_tel 17 ALIGNMENT 0 Y12-8d17.p1k chr15 138 62 1038 1037 C 77 0.00 1386 ambiguous_tel 11 ALIGNMENT 385 Y12-8d17.p1k chr03 1075 249 371 1178 C 827 86.58 1386 ambiguous_tel 19 ALIGNMENT 670 Y12-8d17.p1k chr12 20 1077 1063966 1065025 F 1058 90.17 1386 ambiguous_tel 1 ALIGNMENT 332 Y12-8d17.p1k chr11 336 934 665548 666136 F 599 88.81 1386 ambiguous_tel 21 ALIGNMENT 596 Y12-8d17.p1k chr02 1075 30 5859 6908 C 1046 88.05 1386 ambiguous_tel 5 ALIGNMENT 394 Y12-8d17.p1k chr14 1076 279 6696 7478 C 798 87.09 1386 ambiguous_tel 17 ALIGNMENT 0 Y12-8d17.p1k chr09 62 277 439013 439012 F 216 0.00 1386 ambiguous_tel 9 ALIGNMENT 392 Y12-8d17.p1k chr07 1063 249 54 862 C 815 86.13 1386 ambiguous_tel 18 ALIGNMENT 412 Y12-8d17.p1k chr10 278 1075 744767 745554 F 798 87.84 1386 ambiguous_tel 15 ALIGNMENT 461 Y12-8d17.p1k chr09 278 1087 439013 439821 F 810 88.89 1386 ambiguous_tel 9 ALIGNMENT 627 Y12-8d17.p1k chr04 20 1048 1524296 1525315 F 1029 90.09 1386 ambiguous_tel 4 ALIGNMENT 0 Y12-8d17.p1k chr15 62 132 1083721 1083720 F 71 0.00 1386 ambiguous_tel 14 ALIGNMENT 473 Y12-8d17.p1k chr15 133 1032 1083721 1084599 F 900 87.22 1386 ambiguous_tel 14 ALIGNMENT 0 Y12-8d17.p1k chr08 62 333 556109 556108 F 272 0.00 1386 ambiguous_tel 20 ALIGNMENT 0 Y12-8d17.p1k chr11 191 335 665549 665547 F 145 0.00 1386 ambiguous_tel 21 ALIGNMENT 476 Y12-8d17.p1k chr16 1032 133 6542 7420 C 900 87.33 1386 ambiguous_tel 12 ALIGNMENT 0 Y12-8d17.p1k chr03 248 62 1179 1178 C 187 0.00 1386 ambiguous_tel 19 ALIGNMENT 478 Y12-8d17.p1k chr15 1069 139 114 1037 C 931 86.68 1386 ambiguous_tel 11 ALIGNMENT 0 Y12-8d17.p1k chr16 132 62 7421 7420 C 71 0.00 1386 ambiguous_tel 12 ALIGNMENT 0 Y12-8d17.p1k chr07 248 62 863 862 C 187 0.00 1386 ambiguous_tel 18 ALIGNMENT 637 Y12-8d17.p1k chr10 877 20 7225 8078 C 858 93.71 1386 ambiguous_tel 3 ALIGNMENT 0 Y12-8d17.p1k chr02 62 277 812323 812322 F 216 0.00 1386 ambiguous_tel 16 ALIGNMENT 405 Y12-8d17.p1k chr02 278 1069 812323 813116 F 792 87.75 1386 ambiguous_tel 16 ALIGNMENT 0 Y12-8d17.p1k chr03 62 138 315589 315588 F 77 0.00 1386 ambiguous_tel 10 ALIGNMENT 597 Y12-8d17.p1k chr01 1075 36 73 1095 C 1040 89.13 1386 ambiguous_tel 6 ALIGNMENT 579 Y12-8d17.p1k chr14 30 1075 782977 784014 F 1046 87.95 1386 ambiguous_tel 7 ALIGNMENT 485 Y12-8d17.p1k chr05 184 1065 569450 570323 F 882 88.44 1386 ambiguous_tel 13 ALIGNMENT 976 Y12-8d17.q1k chr16 1213 35 923847 925037 C 1179 95.93 1264 accept 0 ALIGNMENT 1029 Y12-8d20.q1k chr10 1256 33 334765 335988 C 1224 96.16 1285 accept 0 ALIGNMENT 882 Y12-8d20.p1k chr10 22 1049 331557 332587 F 1028 96.50 1393 accept 0 ALIGNMENT 1025 Y12-8d21.q1k chr13 1256 31 749559 750790 C 1226 95.35 1280 accept 0 ALIGNMENT 987 Y12-8d21.p1k chr13 20 1172 745085 746250 F 1153 96.62 1310 accept 0 ALIGNMENT 39 Y12-8d22.q1k chr15 661 712 346223 346274 F 52 92.31 1310 reject_low 1 ALIGNMENT 0 Y12-8d22.q1k chr15 204 660 345766 346222 F 457 0.00 1310 reject_low 1 ALIGNMENT 42 Y12-8d22.q1k chr15 152 203 345714 345765 F 52 94.23 1310 reject_low 1 ALIGNMENT 854 Y12-8d22.p1k chr15 14 1028 341804 342803 F 1015 96.35 1397 accept 0 ALIGNMENT 0 Y12-8d22.q1k chr15 62 151 345714 345713 F 90 0.00 1310 reject_low 1 ALIGNMENT 793 Y12-8d22.q1k chr15 960 28 345467 346398 C 933 95.71 1310 accept 0 ALIGNMENT 117 Y12-8d23.p1k chr06 345 863 28880 29403 F 519 75.34 1279 reject_low 2 ALIGNMENT 1044 Y12-8d23.q1k chr07 1233 35 1074050 1075246 C 1199 96.33 1330 accept 0 ALIGNMENT 1004 Y12-8d23.p1k chr07 15 1229 1070646 1071869 F 1215 95.23 1279 accept 0 ALIGNMENT 0 Y12-8d23.p1k chr02 706 832 801540 801539 F 127 0.00 1279 reject_low 1 ALIGNMENT 0 Y12-8d23.p1k chr06 62 344 28880 28879 F 283 0.00 1279 reject_low 2 ALIGNMENT 149 Y12-8d23.p1k chr02 248 705 801083 801540 F 458 77.73 1279 reject_low 1 ALIGNMENT 0 Y12-8d23.p1k chr02 62 247 801083 801082 F 186 0.00 1279 reject_low 1 ALIGNMENT 985 Y12-8d24.p1k chr04 23 1242 545019 546237 F 1220 94.59 1289 accept 0 ALIGNMENT 1013 Y12-8d24.q1k chr04 1316 33 550203 551492 C 1284 93.69 1324 accept 0 ALIGNMENT 898 Y12-8e01.p1k chr04 31 1142 503059 504178 F 1112 95.14 1429 accept 0 ALIGNMENT 684 Y12-8e02.p1k chr15 1015 24 1046221 1047202 C 992 91.33 1451 accept_chi 0 ALIGNMENT 422 Y12-8e02.q1k chr04 8 808 1138579 1139355 F 801 86.89 1288 accept_chi 1 ALIGNMENT 970 Y12-8e03.q1k chr09 1237 35 357233 358445 C 1203 95.01 1412 accept 0 ALIGNMENT 998 Y12-8e03.p1k chr09 18 1154 354458 355610 F 1137 97.27 1410 accept 0 ALIGNMENT 0 Y12-8e04.p1k chr07 874 537 774355 774354 C 338 0.00 1420 reject_low 7 ALIGNMENT 499 Y12-8e04.p1k chr16 552 20 856882 857413 C 533 99.06 1420|2,0 reject_low 1 ALIGNMENT 81 Y12-8e04.p1k chr06 453 539 204901 204987 F 87 98.85 1420 reject_low 3 ALIGNMENT 244 Y12-8e04.p1k chr16 817 548 850340 850609 C 270 98.52 1420|0,3 accept_trans 0 reject_low 1 ALIGNMENT 72 Y12-8e04.p1k chr04 536 453 410376 410459 C 84 96.43 1420 reject_low 4 ALIGNMENT 0 Y12-8e04.p1k chr11 874 537 517631 517630 C 338 0.00 1420 reject_low 5 ALIGNMENT 70 Y12-8e04.p1k chr12 464 536 656936 657008 F 73 100.00 1420 reject_low 10 ALIGNMENT 0 Y12-8e04.p1k chr12 62 463 656936 656935 F 402 0.00 1420 reject_low 10 ALIGNMENT 30 Y12-8e04.p1k chr07 731 802 701106 701178 F 72 84.72 1420 reject_low 14 ALIGNMENT 0 Y12-8e04.p1k chr07 463 62 774427 774426 C 402 0.00 1420 reject_low 7 ALIGNMENT 77 Y12-8e04.p1k chr11 536 458 517630 517708 C 79 100.00 1420 reject_low 5 ALIGNMENT 33 Y12-8e04.p1k chr13 649 804 768547 768704 F 156 76.28 1420 reject_low 15 ALIGNMENT 0 Y12-8e04.p1k chr11 874 537 219542 219541 C 338 0.00 1420 reject_low 9 ALIGNMENT 0 Y12-8e04.p1k chr12 668 62 366124 366123 C 607 0.00 1420 reject_low 11 ALIGNMENT 70 Y12-8e04.p1k chr08 464 536 146235 146307 F 73 100.00 1420 reject_low 8 ALIGNMENT 70 Y12-8e04.p1k chr13 464 536 768368 768440 F 73 100.00 1420 reject_low 15 ALIGNMENT 0 Y12-8e04.p1k chr06 62 452 204901 204900 F 391 0.00 1420 reject_low 3 ALIGNMENT 70 Y12-8e04.p1k chr11 536 464 219541 219613 C 73 100.00 1420 reject_low 9 ALIGNMENT 0 Y12-8e04.p1k chr12 874 805 365988 365987 C 70 0.00 1420 reject_low 11 ALIGNMENT 857 Y12-8e04.q1k chr16 33 1121 840541 841631 F 1089 94.31 1335 accept_trans 0 ALIGNMENT 0 Y12-8e04.p1k chr14 704 62 561607 561606 C 643 0.00 1420 reject_low 13 ALIGNMENT 0 Y12-8e04.p1k chr04 874 537 410377 410376 C 338 0.00 1420 reject_low 4 ALIGNMENT 0 Y12-8e04.p1k chr16 547 62 850610 850609 C 486 0.00 1420 accept_trans 0 ALIGNMENT 0 Y12-8e04.p1k chr04 452 62 410460 410459 C 391 0.00 1420 reject_low 4 ALIGNMENT 0 Y12-8e04.p1k chr07 62 730 701106 701105 F 669 0.00 1420 reject_low 14 ALIGNMENT 0 Y12-8e04.p1k chr13 62 463 768368 768367 F 402 0.00 1420 reject_low 15 ALIGNMENT 0 Y12-8e04.p1k chr16 820 818 844403 850339 C 3 0.00 1420 accept_trans 0 reject_low 1 ALIGNMENT 0 Y12-8e04.p1k chr16 550 551 850607 856883 C 0 0.00 1420 reject_low 1 ALIGNMENT 0 Y12-8e04.p1k chr06 540 874 204987 204986 F 335 0.00 1420 reject_low 3 ALIGNMENT 75 Y12-8e04.p1k chr10 460 547 197228 197315 F 88 95.45 1420 reject_low 2 ALIGNMENT 0 Y12-8e04.p1k chr08 62 463 146235 146234 F 402 0.00 1420 reject_low 8 ALIGNMENT 70 Y12-8e04.p1k chr07 536 464 774354 774426 C 73 100.00 1420 reject_low 7 ALIGNMENT 0 Y12-8e04.p1k chr07 803 874 701178 701177 F 72 0.00 1420 reject_low 14 ALIGNMENT 0 Y12-8e04.p1k chr13 62 459 321142 321141 F 398 0.00 1420 reject_low 6 ALIGNMENT 0 Y12-8e04.p1k chr14 874 805 561506 561505 C 70 0.00 1420 reject_low 13 ALIGNMENT 32 Y12-8e04.p1k chr13 804 661 463297 463441 C 144 76.39 1420 reject_low 12 ALIGNMENT 0 Y12-8e04.p1k chr13 539 874 321220 321219 F 336 0.00 1420 reject_low 6 ALIGNMENT 0 Y12-8e04.p1k chr12 537 874 657008 657007 F 338 0.00 1420 reject_low 10 ALIGNMENT 0 Y12-8e04.p1k chr13 874 805 463298 463297 C 70 0.00 1420 reject_low 12 ALIGNMENT 215 Y12-8e04.p1k chr16 1184 821 844026 844402 C 364 89.01 1420 accept_trans 0 reject_low 1 ALIGNMENT 0 Y12-8e04.p1k chr11 463 62 219614 219613 C 402 0.00 1420 reject_low 9 ALIGNMENT 0 Y12-8e04.p1k chr13 660 62 463442 463441 C 599 0.00 1420 reject_low 12 ALIGNMENT 76 Y12-8e04.p1k chr13 460 538 321142 321220 F 79 100.00 1420 reject_low 6 ALIGNMENT 0 Y12-8e04.p1k chr10 548 874 197315 197314 F 327 0.00 1420 reject_low 2 ALIGNMENT 0 Y12-8e04.p1k chr08 537 874 146307 146306 F 338 0.00 1420 reject_low 8 ALIGNMENT 32 Y12-8e04.p1k chr14 804 705 561505 561606 C 100 81.00 1420 reject_low 13 ALIGNMENT 0 Y12-8e04.p1k chr11 457 62 517709 517708 C 396 0.00 1420 reject_low 5 ALIGNMENT 0 Y12-8e04.p1k chr10 62 459 197228 197227 F 398 0.00 1420 reject_low 2 ALIGNMENT 43 Y12-8e04.p1k chr12 804 669 365987 366123 C 136 79.41 1420 reject_low 11 ALIGNMENT 0 Y12-8e04.p1k chr13 805 874 768704 768703 F 70 0.00 1420 reject_low 15 ALIGNMENT 0 Y12-8e04.p1k chr13 537 648 768441 768546 F 112 0.00 1420 reject_low 15 ALIGNMENT 935 Y12-8e06.q1k chr14 1112 35 611473 612560 C 1078 97.12 1335 accept 0 ALIGNMENT 346 Y12-8e06.p1k chr12 40 1158 638582 639705 F 1119 77.66 1420 reject_low 1 ALIGNMENT 1046 Y12-8e06.p1k chr14 23 1185 608104 609275 F 1163 97.33 1420 accept 0 ALIGNMENT 844 Y12-8e07.p1k chr07 1093 19 779280 780363 C 1075 94.42 1445 accept 0 ALIGNMENT 74 Y12-8e07.p1k chr15 686 760 110961 111035 F 75 100.00 1445 reject_low 1 ALIGNMENT 0 Y12-8e07.p1k chr14 758 922 96312 96311 F 165 0.00 1445 reject_low 2 ALIGNMENT 0 Y12-8e07.p1k chr14 62 684 96240 96239 F 623 0.00 1445 reject_low 2 ALIGNMENT 1017 Y12-8e07.q1k chr07 36 1189 775598 776760 F 1154 96.71 1376 accept 0 ALIGNMENT 0 Y12-8e07.p1k chr15 62 685 110961 110960 F 624 0.00 1445 reject_low 1 ALIGNMENT 0 Y12-8e07.p1k chr15 761 922 111035 111034 F 162 0.00 1445 reject_low 1 ALIGNMENT 73 Y12-8e07.p1k chr14 685 757 96240 96312 F 73 100.00 1445 reject_low 2 ALIGNMENT 1021 Y12-8e08.p1k chr12 1167 25 461635 462785 C 1143 96.76 1427 accept 0 ALIGNMENT 1070 Y12-8e08.q1k chr12 33 1283 465868 467127 F 1251 95.84 1413 reject_low 1 ALIGNMENT 1070 Y12-8e08.q1k chr12 33 1283 456731 457990 F 1251 95.84 1413 accept 0 ALIGNMENT 1021 Y12-8e08.p1k chr12 1167 25 452498 453648 C 1143 96.76 1427 reject_low 2 ALIGNMENT 0 Y12-8e09.p1k chr12 62 79 489754 489753 F 18 0.00 1453 reject_low 2 ALIGNMENT 1059 Y12-8e09.p1k chr12 20 1160 451725 452864 F 1141 98.07 1453 accept 0 ALIGNMENT 1059 Y12-8e09.p1k chr12 20 1160 460862 462001 F 1141 98.07 1453 accept 1 ALIGNMENT 957 Y12-8e09.q1k chr12 1090 35 464242 465304 C 1056 97.73 1379 accept 1 ALIGNMENT 957 Y12-8e09.q1k chr12 1090 35 455105 456167 C 1056 97.73 1379 accept 0 ALIGNMENT 761 Y12-8e09.p1k chr12 80 869 489754 490543 F 790 98.99 1453 reject_low 2 ALIGNMENT 875 Y12-8e11.q1k chr08 1131 34 489678 490789 C 1098 94.17 1380 accept 0 ALIGNMENT 867 Y12-8e11.p1k chr08 31 1179 486387 487535 F 1149 92.69 1491 accept 0 ALIGNMENT 286 Y12-8e13.p1k chr08 811 25 470968 471753 C 787 79.29 1454 reject_low 2 ALIGNMENT 0 Y12-8e13.q1k chr08 62 76 451326 451325 F 15 0.00 1331 reject_low 1 ALIGNMENT 0 Y12-8e13.p1k chr08 829 812 470969 470968 C 18 0.00 1454 reject_low 2 ALIGNMENT 973 Y12-8e13.q1k chr07 36 1117 1000891 1001988 F 1082 97.32 1331 accept 0 ALIGNMENT 778 Y12-8e13.q1k chr08 77 1117 451326 452383 F 1041 92.22 1331 reject_low 1 ALIGNMENT 20 Y12-8e13.p1k chr14 915 944 512455 512484 F 30 96.67 1454 reject_low 3 ALIGNMENT 0 Y12-8e13.p1k chr14 62 914 512455 512454 F 853 0.00 1454 reject_low 3 ALIGNMENT 982 Y12-8e13.p1k chr07 1249 19 1004204 1005439 C 1231 94.64 1454 accept 0 ALIGNMENT 0 Y12-8e14.q1k chr15 62 138 976416 976415 F 77 0.00 1346 reject_low 4 ALIGNMENT 1021 Y12-8e14.p1k chr04 1224 18 1179933 1181151 C 1207 96.60 1413 accept 0 ALIGNMENT 0 Y12-8e14.q1k chr10 212 876 422924 422923 F 665 0.00 1346 reject_low 3 ALIGNMENT 943 Y12-8e14.q1k chr04 28 1266 1175710 1176958 F 1239 93.62 1346 accept 0 ALIGNMENT 0 Y12-8e14.q1k chr12 876 118 793559 793558 C 759 0.00 1346 reject_low 6 ALIGNMENT 0 Y12-8e14.q1k chr07 876 118 845293 845292 C 759 0.00 1346 reject_low 5 ALIGNMENT 73 Y12-8e14.q1k chr15 139 211 976416 976488 F 73 100.00 1346 reject_low 4 ALIGNMENT 0 Y12-8e14.q1k chr15 212 876 976488 976487 F 665 0.00 1346 reject_low 4 ALIGNMENT 73 Y12-8e14.q1k chr10 139 211 422852 422924 F 73 100.00 1346 reject_low 3 ALIGNMENT 36 Y12-8e14.q1k chr12 117 51 793558 793624 C 67 85.07 1346 reject_low 6 ALIGNMENT 0 Y12-8e14.q1k chr13 876 212 572883 572882 C 665 0.00 1346 reject_low 2 ALIGNMENT 0 Y12-8e14.q1k chr10 62 138 422852 422851 F 77 0.00 1346 reject_low 3 ALIGNMENT 74 Y12-8e14.q1k chr13 211 138 572882 572955 C 74 100.00 1346 reject_low 2 ALIGNMENT 0 Y12-8e14.q1k chr13 137 62 572956 572955 C 76 0.00 1346 reject_low 2 ALIGNMENT 0 Y12-8e14.q1k chr10 138 62 391032 391031 C 77 0.00 1346 reject_low 1 ALIGNMENT 0 Y12-8e14.q1k chr10 876 217 390955 390954 C 660 0.00 1346 reject_low 1 ALIGNMENT 75 Y12-8e14.q1k chr10 216 139 390954 391031 C 78 98.72 1346 reject_low 1 ALIGNMENT 39 Y12-8e14.q1k chr07 117 51 845292 845358 C 67 86.57 1346 reject_low 5 ALIGNMENT 922 Y12-8e15.p1k chr14 1206 20 516300 517494 C 1187 94.27 1451 accept 0 ALIGNMENT 996 Y12-8e15.q1k chr14 33 1243 512478 513693 F 1211 95.79 1344 accept 0 ALIGNMENT 1044 Y12-8e16.q1k chr15 1289 36 940425 941688 C 1254 95.69 1341 accept 0 ALIGNMENT 909 Y12-8e16.p1k chr15 12 1095 938679 939773 F 1084 96.03 1408 accept 0 ALIGNMENT 965 Y12-8e18.p1k chr13 14 1129 733589 734720 F 1116 97.04 1362 accept 0 ALIGNMENT 1027 Y12-8e18.q1k chr13 1242 36 737562 738769 C 1207 96.77 1276 accept 0 ALIGNMENT 1031 Y12-8e19.q1k chr11 1258 36 55100 56332 C 1223 96.16 1289 accept 0 ALIGNMENT 1008 Y12-8e19.p1k chr11 17 1275 51031 52311 F 1259 95.47 1401 accept 0 ALIGNMENT 954 Y12-8e20.p1k chr04 14 1174 1244683 1245847 F 1161 94.49 1401 accept 0 ALIGNMENT 967 Y12-8e20.q1k chr04 1151 31 1248332 1249439 C 1121 96.61 1301 accept 0 ALIGNMENT 930 Y12-8e20.p1k chr15 14 1080 576561 577629 F 1067 96.06 1401 reject_low 1 ALIGNMENT 103 Y12-8e21.q1k chr11 173 34 109877 110016 C 140 92.14 1290 reject_low 1 ALIGNMENT 1032 Y12-8e21.q1k chr10 1290 34 90282 91537 C 1257 95.47 1290 accept 0 ALIGNMENT 246 Y12-8e21.q1k chr11 792 473 109269 109588 C 320 92.50 1290 reject_low 1 ALIGNMENT 0 Y12-8e21.q1k chr11 472 174 109589 109876 C 299 0.00 1290 reject_low 1 ALIGNMENT 0 Y12-8e21.q1k chr11 875 793 109270 109269 C 83 0.00 1290 reject_low 1 ALIGNMENT 1044 Y12-8e21.p1k chr10 17 1244 86993 88225 F 1228 96.25 1348 accept 0 ALIGNMENT 987 Y12-8e22.p1k chr04 1155 13 788389 789542 C 1143 96.94 1318 accept 0 ALIGNMENT 1001 Y12-8e22.q1k chr04 34 1233 783281 784488 F 1200 95.67 1254 accept 0 ALIGNMENT 958 Y12-8e23.p1k chr12 1273 21 441043 442296 C 1253 93.70 1330 accept 0 ALIGNMENT 1002 Y12-8e23.q1k chr12 35 1226 437756 438943 F 1192 95.72 1231 accept 0 ALIGNMENT 1057 Y12-8f03.p1k chr10 1200 16 279475 280671 C 1185 97.22 1418 accept_chi 0 ALIGNMENT 1021 Y12-8f03.q1k chr02 35 1232 518901 520109 F 1198 96.33 1374 accept_chi 1 ALIGNMENT 1017 Y12-8f04.q1k chr05 34 1203 207747 208922 F 1170 96.50 1368 accept 0 ALIGNMENT 1089 Y12-8f04.p1k chr05 1246 18 210718 211954 C 1229 96.83 1454 accept 0 ALIGNMENT 1034 Y12-8f05.p1k chr14 1243 22 489652 490881 C 1222 95.17 1457 accept_chi 0 ALIGNMENT 950 Y12-8f05.q1k chr07 1132 33 348822 349927 C 1100 97.09 1376 accept_chi 1 ALIGNMENT 0 Y12-8f06.p1k chr14 500 62 561878 561877 C 439 0.00 1376 reject_low 3 ALIGNMENT 882 Y12-8f06.q1k chr16 36 1121 930136 931231 F 1086 95.03 1352 accept 0 ALIGNMENT 0 Y12-8f06.p1k chr16 567 886 437053 437052 F 320 0.00 1376 reject_low 5 ALIGNMENT 0 Y12-8f06.p1k chr04 500 62 437416 437415 C 439 0.00 1376 reject_low 1 ALIGNMENT 32 Y12-8f06.p1k chr02 501 566 643584 643649 F 66 86.36 1376 reject_low 2 ALIGNMENT 30 Y12-8f06.p1k chr04 607 501 437309 437415 C 107 79.44 1376 reject_low 1 ALIGNMENT 0 Y12-8f06.p1k chr16 62 500 436988 436987 F 439 0.00 1376 reject_low 5 ALIGNMENT 0 Y12-8f06.p1k chr14 886 567 561813 561812 C 320 0.00 1376 reject_low 3 ALIGNMENT 0 Y12-8f06.p1k chr15 886 567 703978 703977 C 320 0.00 1376 reject_low 4 ALIGNMENT 32 Y12-8f06.p1k chr15 566 501 703977 704042 C 66 86.36 1376 reject_low 4 ALIGNMENT 0 Y12-8f06.p1k chr02 567 886 643649 643648 F 320 0.00 1376 reject_low 2 ALIGNMENT 29 Y12-8f06.p1k chr16 501 566 436988 437053 F 66 84.85 1376 reject_low 5 ALIGNMENT 841 Y12-8f06.p1k chr16 1028 22 932767 933783 C 1007 97.02 1376 accept 0 ALIGNMENT 0 Y12-8f06.p1k chr04 886 608 437310 437309 C 279 0.00 1376 reject_low 1 ALIGNMENT 32 Y12-8f06.p1k chr14 566 501 561812 561877 C 66 86.36 1376 reject_low 3 ALIGNMENT 0 Y12-8f06.p1k chr02 62 500 643584 643583 F 439 0.00 1376 reject_low 2 ALIGNMENT 0 Y12-8f06.p1k chr15 500 62 704043 704042 C 439 0.00 1376 reject_low 4 ALIGNMENT 919 Y12-8f07.q1k chr13 40 1107 334769 335851 F 1068 96.35 1335 accept 0 ALIGNMENT 1008 Y12-8f07.p1k chr13 1202 20 339684 340873 C 1183 95.86 1440 accept 0 ALIGNMENT 993 Y12-8f08.p1k chr04 1184 18 961502 962688 C 1167 96.23 1407 accept 0 ALIGNMENT 981 Y12-8f08.q1k chr04 35 1238 958142 959355 F 1204 95.27 1377 accept 0 ALIGNMENT 980 Y12-8f09.p1k chr14 1209 25 760770 761958 C 1185 95.44 1463 accept 0 ALIGNMENT 991 Y12-8f09.q1k chr14 36 1167 756330 757473 F 1132 96.91 1361 accept 0 ALIGNMENT 1025 Y12-8f10.q1k chr16 1233 35 534631 535843 C 1199 96.58 1380 accept 0 ALIGNMENT 1024 Y12-8f10.p1k chr16 17 1190 531350 532539 F 1174 96.85 1428 accept 0 ALIGNMENT 933 Y12-8f11.p1k chr07 17 1106 685010 686107 F 1090 97.25 1385 accept 0 ALIGNMENT 983 Y12-8f11.q1k chr07 1200 36 689238 690410 C 1165 95.88 1348 accept 0 ALIGNMENT 922 Y12-8f12.p1k chr08 22 1100 30517 31612 F 1079 97.13 1371 accept 0 ALIGNMENT 982 Y12-8f12.q1k chr08 1178 36 33890 35040 C 1143 96.24 1357 accept 0 ALIGNMENT 865 Y12-8f13.q1k chr14 1073 40 469037 470090 C 1034 96.52 1279 accept 0 ALIGNMENT 928 Y12-8f13.p1k chr14 24 1107 465659 466757 F 1084 96.13 1350 accept 0 ALIGNMENT 1031 Y12-8f14.q1k chr12 35 1248 452375 453597 F 1214 95.47 1353 accept 0 ALIGNMENT 193 Y12-8f14.q1k chr12 35 235 490343 490543 F 201 99.00 1353 reject_low 2 ALIGNMENT 0 Y12-8f14.q1k chr12 236 870 490543 490542 F 635 0.00 1353 reject_low 2 ALIGNMENT 1028 Y12-8f14.p1k chr12 1169 19 464385 465545 C 1151 97.13 1378 accept 1 ALIGNMENT 1031 Y12-8f14.q1k chr12 35 1248 461512 462734 F 1214 95.47 1353 accept 1 ALIGNMENT 1028 Y12-8f14.p1k chr12 1169 19 455248 456408 C 1151 97.13 1378 accept 0 ALIGNMENT 1030 Y12-8f15.p1k chr04 1279 16 198534 199783 C 1264 95.02 1500 accept 0 ALIGNMENT 997 Y12-8f15.q1k chr04 35 1213 194602 195787 F 1179 95.76 1351 accept 0 ALIGNMENT 0 Y12-8f16.q1k chr07 614 62 650622 650621 C 553 0.00 1379 reject_low 1 ALIGNMENT 838 Y12-8f16.p1k chr16 27 1091 546093 547173 F 1065 94.27 1392 accept 0 ALIGNMENT 967 Y12-8f16.q1k chr16 1157 28 551124 552238 C 1130 96.55 1379 accept 0 ALIGNMENT 47 Y12-8f16.q1k chr07 995 615 650244 650621 C 381 71.39 1379 reject_low 1 ALIGNMENT 918 Y12-8f17.p1k chr07 20 1081 381823 382904 F 1062 96.61 1330 accept_chi 1 ALIGNMENT 980 Y12-8f17.q1k chr10 36 1253 215089 216317 F 1218 94.83 1282 accept_chi 0 ALIGNMENT 671 Y12-8f18.p1k chr12 908 33 961673 962538 C 876 93.72 1430 accept 0 ALIGNMENT 995 Y12-8f19.p1k chr16 18 1144 551799 552938 F 1127 96.98 1339 accept 0 ALIGNMENT 939 Y12-8f19.q1k chr16 1277 34 555595 556822 C 1244 94.37 1300 accept 0 ALIGNMENT 1005 Y12-8f20.q1k chr13 32 1241 233053 234263 F 1210 95.70 1285 accept 0 ALIGNMENT 912 Y12-8f20.p1k chr13 1109 14 235983 237075 C 1096 96.17 1376 accept 0 ALIGNMENT 561 Y12-8f21.q1k chrm 35 801 28719 29482 F 767 95.96 1260 accept_chi 1 ALIGNMENT 62 Y12-8f21.q1k chr12 400 488 412620 412708 F 89 95.51 1260 reject_low 2 ALIGNMENT 125 Y12-8f21.q1k chrm 825 1158 29552 29887 F 334 86.53 1260 accept_chi 1 ALIGNMENT 0 Y12-8f21.q1k chrm 802 824 29483 29551 F 23 0.00 1260 accept_chi 1 ALIGNMENT 1015 Y12-8f21.p1k chr15 26 1094 219378 220446 F 1069 98.78 1323 accept_chi 0 ALIGNMENT 0 Y12-8f21.q1k chrm 62 951 29653 29652 F 890 0.00 1260 reject_low 3 ALIGNMENT 0 Y12-8f21.q1k chr12 489 844 412708 412707 F 356 0.00 1260 reject_low 2 ALIGNMENT 0 Y12-8f21.q1k chr12 62 399 412620 412619 F 338 0.00 1260 reject_low 2 ALIGNMENT 22 Y12-8f21.q1k chrm 952 987 29653 29688 F 36 97.22 1260 reject_low 3 ALIGNMENT 897 Y12-8f22.p1k chr02 18 1091 528931 529989 F 1074 96.18 1380 accept 0 ALIGNMENT 931 Y12-8f22.q1k chr02 1256 35 531736 532943 C 1222 93.94 1282 accept 0 ALIGNMENT 990 Y12-8f23.p1k chr15 19 1250 942392 943608 F 1232 94.81 1329 accept 0 ALIGNMENT 997 Y12-8f23.q1k chr15 1194 35 946201 947349 C 1160 96.72 1240 accept 0 ALIGNMENT 969 Y12-8g02.q1k chr07 1144 29 266483 267596 C 1116 96.59 1350 accept 0 ALIGNMENT 953 Y12-8g02.p1k chr07 18 1192 262576 263765 F 1175 95.40 1386 accept 0 ALIGNMENT 1002 Y12-8g03.p1k chr04 1210 18 233874 235078 C 1193 96.06 1471 accept 0 ALIGNMENT 981 Y12-8g03.q1k chr04 28 1178 230527 231687 F 1151 96.00 1356 accept 0 ALIGNMENT 1048 Y12-8g04.q1k chr15 32 1225 1042661 1043862 F 1194 96.65 1360 accept 0 ALIGNMENT 988 Y12-8g04.p1k chr15 1120 20 1046104 1047212 C 1101 97.64 1376 accept 0 ALIGNMENT 980 Y12-8g05.p1k chr12 1179 17 456841 458032 C 1163 95.53 1414 accept 0 ALIGNMENT 980 Y12-8g05.p1k chr12 1179 17 465978 467169 C 1163 95.53 1414 accept 1 ALIGNMENT 1018 Y12-8g06.p1k chr15 16 1196 137802 138997 F 1181 96.53 1417 accept 0 ALIGNMENT 998 Y12-8g06.q1k chr15 1185 28 140504 141665 C 1158 96.72 1367 accept 0 ALIGNMENT 679 Y12-8g07.p1k chr12 1027 27 457023 458017 C 1001 90.41 1489 accept_chi 1 ALIGNMENT 924 Y12-8g07.q1k chr08 36 1219 148643 149823 F 1184 94.43 1393 accept_chi 0 ALIGNMENT 679 Y12-8g07.p1k chr12 1027 27 466160 467154 C 1001 90.41 1489 accept_chi 2 ALIGNMENT 1013 Y12-8g09.q1k chr09 28 1200 290427 291604 F 1173 95.82 1359 accept 0 ALIGNMENT 1005 Y12-8g09.p1k chr09 1188 19 295032 296205 C 1170 97.01 1464 accept 0 ALIGNMENT 1058 Y12-8g11.p1k chr12 15 1236 452879 454113 F 1222 96.24 1461 accept 0 ALIGNMENT 1058 Y12-8g11.p1k chr12 15 1236 462016 463250 F 1222 96.24 1461 accept 1 ALIGNMENT 979 Y12-8g11.q1k chr12 1204 38 456676 457867 C 1167 95.63 1350 accept 0 ALIGNMENT 979 Y12-8g11.q1k chr12 1204 38 465813 467004 C 1167 95.63 1350 accept 1 ALIGNMENT 929 Y12-8g12.p1k chr12 16 1093 142090 143186 F 1078 96.94 1419 accept 0 ALIGNMENT 958 Y12-8g12.q1k chr12 1202 34 143768 144950 C 1169 95.64 1347 accept 0 ALIGNMENT 1012 Y12-8g13.p1k chr04 1208 17 741282 742481 C 1192 95.97 1462 accept 0 ALIGNMENT 1032 Y12-8g13.q1k chr04 36 1254 738587 739796 F 1219 96.23 1386 accept 0 ALIGNMENT 930 Y12-8g14.p1k chr13 1140 18 550367 551508 C 1123 95.19 1399 accept 0 ALIGNMENT 0 Y12-8g14.p1k chr04 62 723 308791 308790 F 662 0.00 1399 reject_low 1 ALIGNMENT 905 Y12-8g14.q1k chr13 30 1152 547078 548211 F 1123 94.84 1313 accept 0 ALIGNMENT 171 Y12-8g14.p1k chr04 724 1140 308791 309226 F 417 81.53 1399 reject_low 1 ALIGNMENT 430 Y12-8g15.p1k chr14 27 473 143638 144084 F 447 99.55 1350 accept 0 ALIGNMENT 0 Y12-8g15.p1k chr14 474 473 144085 144144 F 0 0.00 1350 accept 0 ALIGNMENT 483 Y12-8g15.p1k chr14 473 1032 144144 144709 F 560 97.14 1350|1,0 accept 0 ALIGNMENT 979 Y12-8g15.q1k chr14 1128 38 148069 149176 C 1091 97.34 1312 accept 0 ALIGNMENT 946 Y12-8g16.q1k chr05 1115 35 220051 221145 C 1081 97.13 1309 accept 0 ALIGNMENT 1024 Y12-8g16.p1k chr05 19 1196 215087 216281 F 1178 96.60 1439 accept 0 ALIGNMENT 944 Y12-8g17.p1k chr16 1117 20 503185 504277 C 1098 96.27 1434 accept 0 ALIGNMENT 1005 Y12-8g17.q1k chr16 37 1252 500359 501590 F 1216 95.31 1336 accept 0 ALIGNMENT 991 Y12-8g18.p1k chr15 24 1145 921309 922440 F 1122 96.88 1373 accept 0 ALIGNMENT 879 Y12-8g18.q1k chr15 1026 33 925485 926486 C 994 97.08 1243 accept 0 ALIGNMENT 923 Y12-8g20.q1k chr13 38 1096 542589 543661 F 1059 97.54 1258 accept 0 ALIGNMENT 1018 Y12-8g20.p1k chr13 1161 21 545531 546687 C 1141 97.11 1340 accept 0 ALIGNMENT 916 Y12-8g21.p1k chr15 18 1026 288648 289664 F 1009 97.72 1274 accept_chi 0 ALIGNMENT 907 Y12-8g21.q1k chr15 36 1064 440768 441811 F 1029 96.79 1227 accept_chi 1 ALIGNMENT 983 Y12-8g23.q1k chr14 1194 38 234757 235924 C 1157 96.54 1260 accept 0 ALIGNMENT 1019 Y12-8g23.p1k chr14 26 1263 231797 233039 F 1238 95.07 1313 accept 0 ALIGNMENT 984 Y12-8g24.q1k chr14 1234 36 311920 313118 C 1199 95.25 1247 accept 0 ALIGNMENT 941 Y12-8g24.p1k chr14 21 1183 307671 308840 F 1163 95.36 1289 accept 0 ALIGNMENT 759 Y12-8h01.q1k chr04 987 29 65433 66375 C 959 95.62 1477 accept 0 ALIGNMENT 940 Y12-8h01.p1k chr04 26 1176 61956 63105 F 1151 94.35 1457 accept 0 ALIGNMENT 66 Y12-8h02.p1k chr10 1067 829 120924 121154 C 239 78.66 1395|9,0 reject_low 4 ALIGNMENT 147 Y12-8h02.p1k chr11 433 718 141799 142084 F 286 83.92 1395 reject_low 1 ALIGNMENT 31 Y12-8h02.p1k chr10 1017 930 120717 120801 C 88 81.82 1395|0,8 reject_low 6 ALIGNMENT 611 Y12-8h02.q1k chr10 29 934 117687 118587 F 906 90.18 1334 accept 0 ALIGNMENT 884 Y12-8h02.p1k chr10 1167 31 120882 122007 C 1137 93.76 1395 accept 0 ALIGNMENT 30 Y12-8h02.p1k chr10 1124 1010 121041 121147 C 115 80.87 1395 reject_low 3 ALIGNMENT 0 Y12-8h02.p1k chr10 844 62 121025 121024 C 783 0.00 1395 reject_low 6 ALIGNMENT 0 Y12-8h02.p1k chr10 828 62 121155 121154 C 767 0.00 1395 reject_low 4 ALIGNMENT 140 Y12-8h02.p1k chr10 500 733 122249 122482 F 234 86.75 1395 reject_low 2 ALIGNMENT 66 Y12-8h02.p1k chr10 991 839 120936 121087 C 153 81.70 1395 reject_low 5 ALIGNMENT 0 Y12-8h02.p1k chr11 62 432 141799 141798 F 371 0.00 1395 reject_low 1 ALIGNMENT 0 Y12-8h02.p1k chr10 1048 992 120805 120935 C 57 0.00 1395 reject_low 5 ALIGNMENT 25 Y12-8h02.p1k chr10 1124 1049 120732 120804 C 76 81.58 1395|0,10 reject_low 4,5 ALIGNMENT 0 Y12-8h02.p1k chr10 62 499 122249 122248 F 438 0.00 1395 reject_low 2 ALIGNMENT 0 Y12-8h02.p1k chr10 838 62 121088 121087 C 777 0.00 1395 reject_low 5 ALIGNMENT 0 Y12-8h02.p1k chr10 937 938 120794 120931 C 0 0.00 1395 reject_low 6 ALIGNMENT 0 Y12-8h02.p1k chr10 1009 62 121148 121147 C 948 0.00 1395 reject_low 3 ALIGNMENT 0 Y12-8h02.p1k chr10 1058 1059 120795 120932 C 0 0.00 1395 reject_low 4 ALIGNMENT 41 Y12-8h02.p1k chr10 945 845 120924 121024 C 101 80.20 1395|8,0 reject_low 6 ALIGNMENT 20 Y12-8h03.p1k chr02 854 830 780442 780466 C 25 100.00 1370 reject_low 4 ALIGNMENT 0 Y12-8h03.p1k chr02 829 62 780467 780466 C 768 0.00 1370 reject_low 4 ALIGNMENT 940 Y12-8h03.q1k chr13 27 1120 510317 511394 F 1094 96.53 1377 accept 0 ALIGNMENT 963 Y12-8h03.p1k chr13 1108 19 514361 515463 C 1090 97.25 1370 accept 0 ALIGNMENT 0 Y12-8h03.p1k chr13 823 62 44418 44417 C 762 0.00 1370 reject_low 1 ALIGNMENT 20 Y12-8h03.p1k chr02 854 830 649338 649362 C 25 100.00 1370 reject_low 3 ALIGNMENT 0 Y12-8h03.p1k chr02 829 62 649363 649362 C 768 0.00 1370 reject_low 3 ALIGNMENT 21 Y12-8h03.p1k chr13 853 824 44387 44417 C 30 93.33 1370 reject_low 1 ALIGNMENT 0 Y12-8h03.p1k chr11 831 62 566769 566768 C 770 0.00 1370 reject_low 2 ALIGNMENT 21 Y12-8h03.p1k chr11 858 832 566742 566768 C 27 96.30 1370 reject_low 2 ALIGNMENT 966 Y12-8h04.p1k chr07 1161 21 899147 900298 C 1141 96.14 1394 accept 0 ALIGNMENT 876 Y12-8h04.q1k chr07 35 1062 895723 896764 F 1028 96.30 1293 accept 0 ALIGNMENT 1038 Y12-8h05.p1k chr02 22 1226 217742 218966 F 1205 96.85 1438 accept 0 ALIGNMENT 1012 Y12-8h05.q1k chr02 1196 33 219705 220871 C 1164 96.74 1365 accept 0 ALIGNMENT 992 Y12-8h06.q1k chr04 35 1298 98480 99750 F 1264 94.78 1391 accept 0 ALIGNMENT 959 Y12-8h06.p1k chr04 1097 19 101391 102482 C 1079 97.50 1387 accept 0 ALIGNMENT 1033 Y12-8h08.p1k chr02 1209 15 679791 680999 C 1195 96.32 1435 accept 0 ALIGNMENT 973 Y12-8h08.q1k chr02 35 1177 674714 675858 F 1143 95.89 1354 accept 0 ALIGNMENT 945 Y12-8h09.p1k chr04 1181 19 934210 935391 C 1163 95.53 1416 accept 0 ALIGNMENT 1031 Y12-8h09.q1k chr04 35 1194 931780 932954 F 1160 96.81 1351 accept 0 ALIGNMENT 956 Y12-8h10.p1k chr05 18 1147 407362 408503 F 1130 96.46 1393 accept 0 ALIGNMENT 0 Y12-8h10.q1k chr05 644 62 411273 411272 C 583 0.00 1351 reject_low 2 ALIGNMENT 22 Y12-8h10.q1k chr05 691 645 411226 411272 C 47 82.98 1351 reject_low 2 ALIGNMENT 0 Y12-8h10.q1k chr05 810 692 411227 411226 C 119 0.00 1351 reject_low 2 ALIGNMENT 0 Y12-8h10.q1k chr05 812 62 411441 411440 C 751 0.00 1351 reject_low 1 ALIGNMENT 23 Y12-8h10.q1k chr05 859 813 411394 411440 C 47 82.98 1351 reject_low 1 ALIGNMENT 971 Y12-8h10.q1k chr05 1213 27 410853 412060 C 1187 94.95 1351 accept 0 ALIGNMENT 975 Y12-8h11.p1k chr10 24 1144 703812 704949 F 1121 96.25 1404 accept 0 ALIGNMENT 1005 Y12-8h11.q1k chr10 1283 40 706722 707968 C 1244 94.86 1405 accept 0 ALIGNMENT 0 Y12-8h14.q1k chr15 62 102 459507 459506 F 41 0.00 1321 reject_low 1 ALIGNMENT 0 Y12-8h14.q1k chr12 85 62 614157 614156 C 24 0.00 1321 reject_low 2 ALIGNMENT 997 Y12-8h14.q1k chr15 44 1149 698738 699852 F 1106 97.20 1321 accept 0 ALIGNMENT 514 Y12-8h14.q1k chr12 1006 86 613236 614156 C 921 85.67 1321 reject_low 2 ALIGNMENT 957 Y12-8h14.p1k chr15 1136 27 701984 703107 C 1110 96.31 1393 accept 0 ALIGNMENT 535 Y12-8h14.q1k chr15 103 1095 459507 460500 F 993 84.89 1321 reject_low 1 ALIGNMENT 897 Y12-8h16.q1k chr10 34 1036 672143 673159 F 1003 97.41 1240 accept 0 ALIGNMENT 968 Y12-8h16.p1k chr10 1171 21 676283 677454 C 1151 96.18 1427 accept 0 ALIGNMENT 556 Y12-8h17.p1k chr04 220 1107 17596 18495 F 888 88.29 1353 reject_low 1 ALIGNMENT 437 Y12-8h17.p1k chr10 1073 209 727304 728176 C 865 84.16 1353 reject_low 2 ALIGNMENT 202 Y12-8h17.p1k chr15 298 701 1717 2120 F 404 84.16 1353 reject_low 5 ALIGNMENT 984 Y12-8h17.q1k chr14 1173 38 18859 20005 C 1136 96.30 1287 accept 0 ALIGNMENT 0 Y12-8h17.p1k chr04 62 219 17596 17595 F 158 0.00 1353 reject_low 1 ALIGNMENT 0 Y12-8h17.p1k chr10 208 62 728177 728176 C 147 0.00 1353 reject_low 2 ALIGNMENT 0 Y12-8h17.p1k chr03 297 62 314908 314907 C 236 0.00 1353 reject_low 4 ALIGNMENT 0 Y12-8h17.p1k chr06 62 219 14324 14323 F 158 0.00 1353 reject_low 3 ALIGNMENT 0 Y12-8h17.p1k chr15 62 297 1717 1716 F 236 0.00 1353 reject_low 5 ALIGNMENT 437 Y12-8h17.p1k chr03 982 298 314223 314907 C 685 88.61 1353 reject_low 4 ALIGNMENT 479 Y12-8h17.p1k chr06 220 982 14324 15085 F 763 88.20 1353 reject_low 3 ALIGNMENT 0 Y12-8h17.p1k chr15 702 899 2120 2119 F 198 0.00 1353 reject_low 5 ALIGNMENT 982 Y12-8h17.p1k chr14 25 1107 15945 17039 F 1083 97.78 1353 accept 0 ALIGNMENT 1006 Y12-8h18.q1k chr04 1243 36 785652 786874 C 1208 96.11 1285 accept 0 ALIGNMENT 929 Y12-8h18.p1k chr04 21 1108 782983 784084 F 1088 95.77 1339 accept 0 ALIGNMENT 961 Y12-8h19.p1k chr01 17 1154 54481 55635 F 1138 96.57 1340 accept 0 ALIGNMENT 1047 Y12-8h19.q1k chr01 1222 40 57577 58774 C 1183 96.79 1286 accept 0 ALIGNMENT 866 Y12-8h20.q1k chr12 34 1014 956342 957336 F 981 97.25 1240 accept 0 ALIGNMENT 929 Y12-8h20.p1k chr12 1084 24 961481 962550 C 1061 96.42 1322 accept 0 ALIGNMENT 969 Y12-8h21.p1k chr05 1141 18 199544 200684 C 1124 97.60 1315 accept 0 ALIGNMENT 910 Y12-8h21.q1k chr05 37 1189 196434 197575 F 1153 94.71 1290 accept 0 ALIGNMENT 1031 Y12-8h22.p1k chr12 22 1292 621329 622598 F 1271 94.73 1354 accept 0 ALIGNMENT 720 Y12-8h22.q1k chr12 903 29 626941 627835 C 875 95.09 1139 accept 0 ALIGNMENT 946 Y12-8h23.q1k chr12 36 1145 354853 355967 F 1110 96.22 1252 accept 0 ALIGNMENT 1012 Y12-8h23.p1k chr12 1261 23 358197 359434 C 1239 95.40 1326 accept 0 ALIGNMENT 94 Y12-8h24.p1k chr06 84 191 31622 31729 F 108 98.15 1292 reject_low 2 ALIGNMENT 0 Y12-8h24.p1k chr06 192 818 31729 31728 F 627 0.00 1292 reject_low 2 ALIGNMENT 0 Y12-8h24.p1k chr06 62 83 31622 31621 F 22 0.00 1292 reject_low 2 ALIGNMENT 908 Y12-8h24.p1k chr12 1164 24 467473 468613 C 1141 94.92 1292 accept 1 ALIGNMENT 974 Y12-8h24.q1k chr12 29 1169 464156 465305 F 1141 96.14 1234 accept 1 ALIGNMENT 908 Y12-8h24.p1k chr12 1164 24 458336 459476 C 1141 94.92 1292 accept 0 ALIGNMENT 974 Y12-8h24.q1k chr12 29 1169 455019 456168 F 1141 96.14 1234 accept 0 ALIGNMENT 903 Y12-8i01.q1k chr03 40 1199 112527 113694 F 1160 94.66 1377 accept 0 ALIGNMENT 916 Y12-8i01.p1k chr03 1124 22 115375 116493 C 1103 96.28 1369 accept 0 ALIGNMENT 915 Y12-8i02.q1k chr01 1134 33 78517 79619 C 1102 95.55 1332 accept 0 ALIGNMENT 888 Y12-8i02.p1k chr01 15 1060 73574 74626 F 1046 96.08 1404 accept 0 ALIGNMENT 1036 Y12-8i03.p1k chr15 1157 16 211742 212895 C 1142 97.55 1399 accept 0 ALIGNMENT 946 Y12-8i03.q1k chr15 34 1140 208697 209820 F 1107 96.48 1360 accept 0 ALIGNMENT 995 Y12-8i05.p1k chr02 1186 23 111326 112496 C 1164 96.05 1434 accept 0 ALIGNMENT 947 Y12-8i05.q1k chr02 35 1173 107716 108862 F 1139 95.35 1361 accept 0 ALIGNMENT 951 Y12-8i06.q1k chr14 1140 40 586095 587199 C 1101 96.55 1338 accept_chi 0 ALIGNMENT 910 Y12-8i06.p1k chr10 1063 20 404528 405581 C 1044 96.93 1350 accept_chi 1 ALIGNMENT 966 Y12-8i07.p1k chr16 13 1152 472563 473721 F 1140 96.14 1467 accept 0 ALIGNMENT 976 Y12-8i07.q1k chr16 1190 35 476265 477435 C 1156 96.11 1394 accept 0 ALIGNMENT 0 Y12-8i09.q1k chr01 898 415 160240 160239 C 484 0.00 1402 reject_low 19 ALIGNMENT 0 Y12-8i09.q1k chr10 415 898 483886 483885 F 484 0.00 1402 reject_low 12 ALIGNMENT 0 Y12-8i09.q1k chr11 898 415 457784 457783 C 484 0.00 1402 reject_low 18 ALIGNMENT 0 Y12-8i09.q1k chr13 898 415 362587 362586 C 484 0.00 1402 reject_low 14 ALIGNMENT 315 Y12-8i09.q1k chr16 414 35 850625 851011 C 380 96.58 1402 reject_low 10 ALIGNMENT 0 Y12-8i09.q1k chr02 415 898 221373 221372 F 484 0.00 1402 reject_low 17 ALIGNMENT 0 Y12-8i09.q1k chr05 392 656 488138 488160 F 265 0.00 1402 accept 0 ALIGNMENT 0 Y12-8i09.q1k chr01 898 415 165828 165827 C 484 0.00 1402 reject_low 21 ALIGNMENT 213 Y12-8i09.q1k chr01 414 83 165827 166163 C 332 90.36 1402 reject_low 21 ALIGNMENT 0 Y12-8i09.q1k chr02 415 898 226955 226954 F 484 0.00 1402 reject_low 1 ALIGNMENT 0 Y12-8i09.q1k chr08 898 395 543631 543630 C 504 0.00 1402 reject_low 8 ALIGNMENT 310 Y12-8i09.q1k chr13 414 82 362586 362918 C 333 99.70 1402 reject_low 14 ALIGNMENT 0 Y12-8i09.q1k chr13 81 62 362919 362918 C 20 0.00 1402 reject_low 14 ALIGNMENT 0 Y12-8i09.q1k chr15 62 212 594642 594641 F 151 0.00 1402 reject_low 22 ALIGNMENT 312 Y12-8i09.q1k chr07 35 414 541303 541689 F 380 96.32 1402 reject_low 11 ALIGNMENT 306 Y12-8i09.q1k chr07 83 414 535215 535546 F 332 99.40 1402 reject_low 16 ALIGNMENT 0 Y12-8i09.q1k chr11 82 62 517427 517426 C 21 0.00 1402 reject_low 15 ALIGNMENT 396 Y12-8i09.q1k chr05 657 1186 488161 488688 F 530 93.96 1402 accept 0 ALIGNMENT 0 Y12-8i09.q1k chr02 395 898 265472 265471 F 504 0.00 1402 reject_low 7 ALIGNMENT 326 Y12-8i09.q1k chr15 35 394 600354 600714 F 360 99.17 1402 reject_low 6 ALIGNMENT 0 Y12-8i09.q1k chr07 392 898 817387 817386 F 507 0.00 1402 reject_low 23 ALIGNMENT 71 Y12-8i09.q1k chr15 213 330 594642 594759 F 118 89.83 1402 reject_low 22 ALIGNMENT 0 Y12-8i09.q1k chr15 331 898 594759 594758 F 568 0.00 1402 reject_low 22 ALIGNMENT 0 Y12-8i09.q1k chr15 62 82 594821 594820 F 21 0.00 1402 reject_low 20 ALIGNMENT 285 Y12-8i09.q1k chr15 83 394 594821 595132 F 312 99.36 1402 reject_low 20 ALIGNMENT 0 Y12-8i09.q1k chr02 62 82 221040 221039 F 21 0.00 1402 reject_low 17 ALIGNMENT 0 Y12-8i09.q1k chr13 898 415 357005 357004 C 484 0.00 1402 reject_low 2 ALIGNMENT 317 Y12-8i09.q1k chr15 35 415 123241 123628 F 381 96.59 1402 reject_low 4 ALIGNMENT 0 Y12-8i09.q1k chr13 395 898 190063 190062 F 504 0.00 1402 reject_low 9 ALIGNMENT 341 Y12-8i09.q1k chr14 414 35 96610 96990 C 380 98.68 1402 reject_low 3 ALIGNMENT 0 Y12-8i09.q1k chr07 62 82 535215 535214 F 21 0.00 1402 reject_low 16 ALIGNMENT 0 Y12-8i09.q1k chr11 82 62 458115 458114 C 21 0.00 1402 reject_low 18 ALIGNMENT 0 Y12-8i09.q1k chr07 415 898 541689 541688 F 484 0.00 1402 reject_low 11 ALIGNMENT 0 Y12-8i09.q1k chr16 898 415 850626 850625 C 484 0.00 1402 reject_low 10 ALIGNMENT 61 Y12-8i09.q1k chr05 217 391 487962 488137 F 175 82.86 1402 accept 0 ALIGNMENT 312 Y12-8i09.q1k chr10 35 414 483500 483886 F 380 96.32 1402 reject_low 12 ALIGNMENT 0 Y12-8i09.q1k chr15 416 898 123628 123627 F 483 0.00 1402 reject_low 4 ALIGNMENT 350 Y12-8i09.q1k chr02 35 414 226575 226955 F 380 99.47 1402 reject_low 1 ALIGNMENT 0 Y12-8i09.q1k chr07 415 898 535546 535545 F 484 0.00 1402 reject_low 16 ALIGNMENT 296 Y12-8i09.q1k chr02 83 414 221040 221373 F 332 98.49 1402 reject_low 17 ALIGNMENT 309 Y12-8i09.q1k chr11 414 83 517095 517426 C 332 99.70 1402 reject_low 15 ALIGNMENT 350 Y12-8i09.q1k chr13 414 35 357004 357384 C 380 99.47 1402 reject_low 2 ALIGNMENT 0 Y12-8i09.q1k chr12 898 395 215102 215101 C 504 0.00 1402 reject_low 13 ALIGNMENT 323 Y12-8i09.q1k chr13 35 394 189703 190063 F 360 98.89 1402 reject_low 9 ALIGNMENT 326 Y12-8i09.q1k chr07 394 35 817418 817778 C 360 99.17 1402 reject_low 5 ALIGNMENT 0 Y12-8i09.q1k chr01 82 62 166164 166163 C 21 0.00 1402 reject_low 21 ALIGNMENT 57 Y12-8i09.q1k chr07 280 391 817278 817387 F 112 86.61 1402 reject_low 23 ALIGNMENT 297 Y12-8i09.q1k chr12 394 35 215101 215467 C 360 96.67 1402 reject_low 13 ALIGNMENT 0 Y12-8i09.q1k chr07 898 395 817419 817418 C 504 0.00 1402 reject_low 5 ALIGNMENT 0 Y12-8i09.q1k chr07 62 279 817278 817277 F 218 0.00 1402 reject_low 23 ALIGNMENT 0 Y12-8i09.q1k chr15 395 898 595132 595131 F 504 0.00 1402 reject_low 20 ALIGNMENT 323 Y12-8i09.q1k chr08 394 35 543630 543990 C 360 98.89 1402 reject_low 8 ALIGNMENT 0 Y12-8i09.q1k chr05 62 216 487962 487961 F 155 0.00 1402 accept 0 ALIGNMENT 0 Y12-8i09.q1k chr14 898 415 96611 96610 C 484 0.00 1402 reject_low 3 ALIGNMENT 288 Y12-8i09.q1k chr11 414 83 457783 458114 C 332 97.59 1402 reject_low 18 ALIGNMENT 0 Y12-8i09.q1k chr15 395 898 600714 600713 F 504 0.00 1402 reject_low 6 ALIGNMENT 323 Y12-8i09.q1k chr02 35 394 265112 265472 F 360 98.89 1402 reject_low 7 ALIGNMENT 1011 Y12-8i09.p1k chr05 1131 19 490320 491442 C 1113 97.39 1444 accept 0 ALIGNMENT 253 Y12-8i09.q1k chr01 414 35 160239 160624 C 380 91.32 1402 reject_low 19 ALIGNMENT 0 Y12-8i09.q1k chr11 898 415 517096 517095 C 484 0.00 1402 reject_low 15 ALIGNMENT 954 Y12-8i11.q1k chr07 38 1149 335826 336950 F 1112 96.49 1336 accept 0 ALIGNMENT 0 Y12-8i13.p1k chr15 92 461 523200 523199 F 370 0.00 1498 reject_low 1 ALIGNMENT 0 Y12-8i13.q1k chr15 198 84 526909 527023 C 115 0.00 1325 reject_low 1 ALIGNMENT 945 Y12-8i13.q1k chr14 36 1165 422630 423771 F 1130 95.84 1325 accept 0 ALIGNMENT 0 Y12-8i13.q1k chr15 759 410 526699 526698 C 350 0.00 1325 reject_low 1 ALIGNMENT 25 Y12-8i13.q1k chr15 83 39 527024 527067 C 45 86.67 1325 reject_low 1 ALIGNMENT 893 Y12-8i13.p1k chr14 1049 21 425993 427021 C 1029 96.21 1498 accept 0 ALIGNMENT 242 Y12-8i13.p1k chr15 462 890 523200 523628 F 429 86.01 1498 reject_low 1 ALIGNMENT 48 Y12-8i13.q1k chr15 409 199 526698 526908 C 211 74.88 1325 reject_low 1 ALIGNMENT 953 Y12-8i14.q1k chr07 1153 38 1004544 1005658 C 1116 95.79 1339 accept 0 ALIGNMENT 0 Y12-8i14.p1k chr08 631 860 452642 452641 F 230 0.00 1366 reject_low 1 ALIGNMENT 513 Y12-8i14.p1k chr08 29 630 452040 452642 F 602 95.18 1366 reject_low 1 ALIGNMENT 966 Y12-8i14.p1k chr07 29 1119 1001645 1002745 F 1091 97.25 1366 accept 0 ALIGNMENT 22 Y12-8i14.q1k chr08 1027 1003 470990 471014 C 25 96.00 1339 reject_low 2 ALIGNMENT 296 Y12-8i14.q1k chr08 865 73 471152 471944 C 793 79.45 1339 reject_low 2 ALIGNMENT 0 Y12-8i14.q1k chr08 1002 866 471015 471151 C 137 0.00 1339 reject_low 2 ALIGNMENT 390 Y12-8i16.q1k chr11 919 59 9272 10132 C 861 82.11 1289 reject_low 1 ALIGNMENT 1043 Y12-8i16.p1k chr15 1181 21 1062000 1063166 C 1161 97.24 1431 accept 0 ALIGNMENT 949 Y12-8i16.q1k chr15 28 1149 1056605 1057736 F 1122 95.45 1289 accept 0 ALIGNMENT 1021 Y12-8i17.p1k chr02 22 1208 27171 28378 F 1187 95.96 1380 ambiguous_tel 0 ALIGNMENT 952 Y12-8i17.q1k chr10 1252 36 267313 268537 C 1217 94.17 1328 accept 1 ALIGNMENT 922 Y12-8i18.q1k chr10 1164 31 130255 131404 C 1134 95.41 1300 accept 0 ALIGNMENT 1021 Y12-8i18.p1k chr10 28 1208 126225 127416 F 1181 96.70 1399 accept 0 ALIGNMENT 1036 Y12-8i20.p1k chr13 18 1172 194571 195730 F 1155 97.84 1366 accept_trans 0 ALIGNMENT 944 Y12-8i20.q1k chr13 1184 36 203133 204297 C 1149 94.60 1275 accept_trans 0 ALIGNMENT 1032 Y12-8i22.p1k chr09 24 1180 239892 241055 F 1157 97.06 1321 accept 0 ALIGNMENT 204 Y12-8i22.q1k chr09 574 215 244263 244610 C 360 88.61 1085 accept 0 ALIGNMENT 954 Y12-8i23.q1k chr10 34 1172 263727 264868 F 1139 95.43 1271 accept 0 ALIGNMENT 959 Y12-8i23.p1k chr10 1134 27 268411 269519 C 1108 96.84 1341 accept 0 ALIGNMENT 0 Y12-8i24.p1k chr04 772 881 1160724 1160723 F 110 0.00 1300 reject_low 1 ALIGNMENT 102 Y12-8i24.q1k chr10 38 170 23064 23196 F 133 93.98 1253|0,4 reject_bad_break 0 ALIGNMENT 983 Y12-8i24.p1k chr10 1134 27 27105 28225 C 1108 97.56 1300 reject_bad_break 0 ALIGNMENT 652 Y12-8i24.q1k chr10 163 1190 23798 24820 F 1028 90.37 1253|4,0 reject_bad_break 0 ALIGNMENT 128 Y12-8i24.p1k chr04 68 771 1160021 1160724 F 704 73.86 1300 reject_low 1 ALIGNMENT 0 Y12-8i24.q1k chr10 167 166 23193 23801 F 0 0.00 1253 reject_bad_break 0 ALIGNMENT 21 Y12-8j01.p1k chr07 730 702 530669 530697 C 29 93.10 1427 reject_low 4 ALIGNMENT 28 Y12-8j01.p1k chr11 701 730 576128 576157 F 30 100.00 1427 reject_low 1 ALIGNMENT 0 Y12-8j01.p1k chr09 704 62 376639 376638 C 643 0.00 1427 reject_low 3 ALIGNMENT 0 Y12-8j01.p1k chr07 701 62 530698 530697 C 640 0.00 1427 reject_low 4 ALIGNMENT 0 Y12-8j01.p1k chr08 731 749 365426 365425 F 19 0.00 1427 reject_low 2 ALIGNMENT 24 Y12-8j01.p1k chr08 702 730 365398 365426 F 29 96.55 1427 reject_low 2 ALIGNMENT 0 Y12-8j01.p1k chr08 62 701 365398 365397 F 640 0.00 1427 reject_low 2 ALIGNMENT 0 Y12-8j01.p1k chr11 731 749 576157 576156 F 19 0.00 1427 reject_low 1 ALIGNMENT 23 Y12-8j01.p1k chr09 730 705 376613 376638 C 26 100.00 1427 reject_low 3 ALIGNMENT 900 Y12-8j01.p1k chr04 1169 22 584182 585312 C 1148 94.86 1427 accept 0 ALIGNMENT 0 Y12-8j01.p1k chr07 749 731 530670 530669 C 19 0.00 1427 reject_low 4 ALIGNMENT 0 Y12-8j01.p1k chr09 749 731 376614 376613 C 19 0.00 1427 reject_low 3 ALIGNMENT 0 Y12-8j01.p1k chr11 62 700 576128 576127 F 639 0.00 1427 reject_low 1 ALIGNMENT 984 Y12-8j02.p1k chr13 1129 10 664312 665433 C 1120 96.96 1439 accept 0 ALIGNMENT 969 Y12-8j04.q1k chr13 36 1174 660508 661654 F 1139 95.96 1394 accept 0 ALIGNMENT 968 Y12-8j04.p1k chr13 1171 29 664259 665421 C 1143 96.24 1393 accept 0 ALIGNMENT 871 Y12-8j05.q1k chr15 1072 37 185688 186738 C 1036 96.14 1295 accept 0 ALIGNMENT 627 Y12-8j05.p1k chr15 119 1015 180972 181872 F 897 91.53 1344 accept 0 ALIGNMENT 848 Y12-8j06.p1k chr04 996 18 1439453 1440444 C 979 97.55 1341 accept 0 ALIGNMENT 0 Y12-8j06.q1k chr09 783 62 350046 350045 C 722 0.00 1340 reject_low 1 ALIGNMENT 0 Y12-8j06.q1k chr09 829 815 350016 350015 C 15 0.00 1340 reject_low 1 ALIGNMENT 20 Y12-8j06.q1k chr09 814 784 350015 350045 C 31 90.32 1340 reject_low 1 ALIGNMENT 977 Y12-8j06.q1k chr04 35 1166 1433928 1435078 F 1132 96.20 1340 accept 0 ALIGNMENT 653 Y12-8j07.q1k chr10 36 1029 476627 477630 F 994 90.24 1325 ambiguous_trans 17 ALIGNMENT 683 Y12-8j07.q1k chr16 1091 36 805238 806312 C 1056 90.06 1325 ambiguous_trans 16 ALIGNMENT 581 Y12-8j07.q1k chr12 663 36 976780 977407 C 628 99.20 1325 ambiguous_trans 24 ALIGNMENT 641 Y12-8j07.q1k chr13 36 1029 188414 189417 F 994 89.84 1325 ambiguous_trans 19 ALIGNMENT 0 Y12-8j07.q1k chr12 840 664 976781 976780 C 177 0.00 1325 ambiguous_trans 24 ALIGNMENT 533 Y12-8j07.q1k chr05 1029 36 493163 494166 C 994 86.22 1325 ambiguous_trans 25 ALIGNMENT 878 Y12-8j07.q1k chr02 36 1091 33930 35004 F 1056 96.21 1325 ambiguous_trans 10 ALIGNMENT 728 Y12-8j07.q1k chr04 1091 36 878895 879969 C 1056 91.48 1325 ambiguous_trans 15 ALIGNMENT 647 Y12-8j07.q1k chr01 1029 36 160910 161913 C 994 90.04 1325 ambiguous_trans 18 ALIGNMENT 623 Y12-8j07.q1k chr16 1029 36 851297 852300 C 994 89.24 1325 ambiguous_trans 21 ALIGNMENT 608 Y12-8j07.q1k chr13 36 1029 200581 201584 F 994 88.73 1325 ambiguous_trans 22 ALIGNMENT 884 Y12-8j07.q1k chr15 36 1091 974571 975645 F 1056 96.40 1325 ambiguous_trans 8 ALIGNMENT 899 Y12-8j07.q1k chr03 36 1091 89099 90173 F 1056 96.88 1325 ambiguous_trans 1 ALIGNMENT 606 Y12-8j07.q1k chr05 1020 36 444074 445067 C 985 88.83 1325 ambiguous_trans 23 ALIGNMENT 884 Y12-8j07.q1k chr04 1091 36 514280 515354 C 1056 96.40 1325 ambiguous_trans 7 ALIGNMENT 743 Y12-8j07.q1k chr14 36 1091 523392 524466 F 1056 91.95 1325 ambiguous_trans 14 ALIGNMENT 641 Y12-8j07.q1k chr16 36 1029 848661 849664 F 994 89.84 1325 ambiguous_trans 20 ALIGNMENT 899 Y12-8j07.q1k chr07 1091 36 569340 570414 C 1056 96.88 1325 ambiguous_trans 3 ALIGNMENT 899 Y12-8j07.q1k chr06 36 1091 142197 143271 F 1056 96.88 1325 ambiguous_trans 2 ALIGNMENT 872 Y12-8j07.q1k chr04 36 1091 876105 877179 F 1056 96.02 1325 ambiguous_trans 11 ALIGNMENT 971 Y12-8j07.p1k chr10 21 1122 350584 351698 F 1102 97.28 1392 accept 0 ALIGNMENT 752 Y12-8j07.q1k chr04 1091 36 646094 647168 C 1056 92.23 1325 ambiguous_trans 13 ALIGNMENT 803 Y12-8j07.q1k chr04 36 1091 985454 986528 F 1056 93.84 1325 ambiguous_trans 12 ALIGNMENT 890 Y12-8j07.q1k chr12 36 1091 945478 946552 F 1056 96.59 1325 ambiguous_trans 6 ALIGNMENT 410 Y12-8j07.q1k chr10 36 949 482211 483126 F 914 83.26 1325 ambiguous_trans 26 ALIGNMENT 881 Y12-8j07.q1k chr15 1091 36 704660 705734 C 1056 96.31 1325 ambiguous_trans 9 ALIGNMENT 899 Y12-8j07.q1k chr07 36 1091 815741 816815 F 1056 96.88 1325 ambiguous_trans 4 ALIGNMENT 893 Y12-8j07.q1k chr14 1091 36 562629 563703 C 1056 96.69 1325 ambiguous_trans 5 ALIGNMENT 997 Y12-8j08.p1k chr13 1147 16 428194 429335 C 1132 96.29 1416 accept 0 ALIGNMENT 928 Y12-8j08.q1k chr13 36 1087 425091 426153 F 1052 97.15 1324 accept 0 ALIGNMENT 981 Y12-8j09.p1k chr08 1199 18 303474 304672 C 1182 96.02 1430 accept 0 ALIGNMENT 916 Y12-8j09.q1k chr08 35 1043 300851 301868 F 1009 97.62 1291 accept 0 ALIGNMENT 899 Y12-8j10.q1k chr15 1160 38 1015340 1016477 C 1123 94.75 1326 accept 0 ALIGNMENT 940 Y12-8j10.p1k chr15 29 1118 1011890 1012985 F 1090 96.06 1412 accept 0 ALIGNMENT 973 Y12-8j11.q1k chr07 1156 38 49419 50554 C 1119 97.23 1307 accept 0 ALIGNMENT 961 Y12-8j11.p1k chr07 15 1184 45286 46469 F 1170 95.38 1409 accept 0 ALIGNMENT 0 Y12-8j13.q1k chr02 860 633 259577 259576 C 228 0.00 1302 reject_low 26 ALIGNMENT 1012 Y12-8j13.p1k chr02 17 1165 222628 223791 F 1149 97.21 1374 ambiguous_trans 0 ALIGNMENT 994 Y12-8j13.p1k chr04 17 1165 1208282 1209445 F 1149 96.69 1374 reject_low 13 ALIGNMENT 0 Y12-8j13.q1k chr02 320 62 226936 226935 C 259 0.00 1302 ambiguous_trans 0 ALIGNMENT 995 Y12-8j13.p1k chr04 1165 23 648663 649819 C 1143 96.85 1374 reject_low 14 ALIGNMENT 997 Y12-8j13.p1k chr10 17 1165 473969 475132 F 1149 96.78 1374 reject_low 11 ALIGNMENT 0 Y12-8j13.q1k chr15 860 633 594822 594821 C 228 0.00 1302 reject_low 25 ALIGNMENT 992 Y12-8j13.p1k chr13 23 1165 185763 186919 F 1143 96.76 1374 ambiguous_trans 4 ALIGNMENT 413 Y12-8j13.q1k chr01 321 1059 160259 161011 F 739 87.82 1302 reject_low 38 ALIGNMENT 597 Y12-8j13.q1k chr07 1152 300 540815 541690 C 853 92.61 1302 reject_low 34 ALIGNMENT 983 Y12-8j13.p1k chr16 23 1165 846007 847166 F 1143 96.50 1374 reject_low 5 ALIGNMENT 0 Y12-8j13.q1k chr02 300 62 265493 265492 C 239 0.00 1302 reject_low 33 ALIGNMENT 576 Y12-8j13.q1k chr16 1053 301 849569 850336 C 753 94.69 1302 reject_low 5 ALIGNMENT 0 Y12-8j13.q1k chr08 633 860 549637 549636 F 228 0.00 1302 reject_low 27 ALIGNMENT 0 Y12-8j13.q1k chr07 299 62 541691 541690 C 238 0.00 1302 reject_low 34 ALIGNMENT 992 Y12-8j13.p1k chr05 1165 23 495661 496817 C 1143 96.76 1374 reject_low 17 ALIGNMENT 0 Y12-8j13.q1k chr12 62 300 215081 215080 F 239 0.00 1302 reject_low 35 ALIGNMENT 989 Y12-8j13.p1k chr04 1165 23 989885 991041 C 1143 96.68 1374 reject_low 20 ALIGNMENT 639 Y12-8j13.q1k chr13 321 1152 357024 357872 F 832 94.83 1302 ambiguous_trans 1 ALIGNMENT 81 Y12-8j13.q1k chr15 514 385 594630 594759 C 130 90.00 1302 reject_low 39 ALIGNMENT 989 Y12-8j13.p1k chr04 23 1165 1097361 1098517 F 1143 96.68 1374 reject_low 21 ALIGNMENT 1000 Y12-8j13.p1k chr14 1165 17 99774 100937 C 1149 96.87 1374 ambiguous_trans 2 ALIGNMENT 1006 Y12-8j13.p1k chr05 1165 17 446562 447725 C 1149 97.04 1374 reject_low 7 ALIGNMENT 23 Y12-8j13.q1k chr16 475 632 850353 850508 F 158 74.68 1302 reject_low 41 ALIGNMENT 54 Y12-8j13.q1k chr07 504 324 817206 817387 C 181 81.22 1302 reject_low 40 ALIGNMENT 995 Y12-8j13.p1k chr07 1165 23 565013 566169 C 1143 96.85 1374 reject_low 15 ALIGNMENT 535 Y12-8j13.q1k chr16 632 36 844408 845010 C 597 97.65 1302 reject_low 30 ALIGNMENT 1006 Y12-8j13.p1k chr13 1165 17 360168 361331 C 1149 97.04 1374 ambiguous_trans 1 ALIGNMENT 992 Y12-8j13.p1k chr04 1165 23 881464 882620 C 1143 96.76 1374 reject_low 16 ALIGNMENT 0 Y12-8j13.q1k chr07 323 62 817388 817387 C 262 0.00 1302 reject_low 40 ALIGNMENT 0 Y12-8j13.q1k chr13 62 300 372696 372695 F 239 0.00 1302 ambiguous_trans 3 ALIGNMENT 654 Y12-8j13.q1k chr02 1152 301 264624 265492 C 852 94.84 1302 reject_low 33 ALIGNMENT 645 Y12-8j13.q1k chr02 1152 321 226087 226935 C 832 95.07 1302 ambiguous_trans 0 ALIGNMENT 0 Y12-8j13.q1k chr04 860 633 1095763 1095762 C 228 0.00 1302 reject_low 29 ALIGNMENT 997 Y12-8j13.p1k chr12 1165 17 479144 480307 C 1149 96.78 1374 reject_low 12 ALIGNMENT 657 Y12-8j13.q1k chr07 301 1152 817398 818266 F 852 94.95 1302 reject_low 31 ALIGNMENT 595 Y12-8j13.q1k chr12 301 1152 215081 215955 F 852 92.61 1302 reject_low 35 ALIGNMENT 0 Y12-8j13.q1k chr07 860 505 817207 817206 C 356 0.00 1302 reject_low 40 ALIGNMENT 0 Y12-8j13.q1k chr15 860 515 594631 594630 C 346 0.00 1302 reject_low 39 ALIGNMENT 1000 Y12-8j13.p1k chr16 17 1165 58043 59206 F 1149 96.87 1374 reject_low 10 ALIGNMENT 564 Y12-8j13.q1k chr15 632 36 594821 595417 C 597 99.16 1302 reject_low 25 ALIGNMENT 555 Y12-8j13.q1k chr13 632 36 184170 184766 C 597 98.66 1302 reject_low 28 ALIGNMENT 0 Y12-8j13.q1k chr16 300 62 850337 850336 C 239 0.00 1302 reject_low 5 ALIGNMENT 657 Y12-8j13.q1k chr15 1152 301 599866 600734 C 852 94.95 1302 reject_low 32 ALIGNMENT 1006 Y12-8j13.p1k chr15 17 1165 119294 120457 F 1149 97.04 1374 reject_low 8 ALIGNMENT 0 Y12-8j13.q1k chr01 62 320 160259 160258 F 259 0.00 1302 reject_low 38 ALIGNMENT 564 Y12-8j13.q1k chr07 36 632 822715 823311 F 597 99.16 1302 reject_low 24 ALIGNMENT 602 Y12-8j13.q1k chr13 1053 301 189322 190083 C 753 95.75 1302 ambiguous_trans 4 ALIGNMENT 0 Y12-8j13.q1k chr16 633 860 850508 850507 F 228 0.00 1302 reject_low 41 ALIGNMENT 618 Y12-8j13.q1k chr14 321 1152 96630 97478 F 832 94.11 1302 ambiguous_trans 2 ALIGNMENT 0 Y12-8j13.q1k chr13 860 633 184171 184170 C 228 0.00 1302 reject_low 28 ALIGNMENT 1003 Y12-8j13.p1k chr13 17 1165 197923 199086 F 1149 96.95 1374 reject_low 9 ALIGNMENT 982 Y12-8j13.p1k chr16 1165 17 853795 854958 C 1149 96.34 1374 reject_low 6 ALIGNMENT 557 Y12-8j13.q1k chr16 321 1053 850645 851392 F 733 94.41 1302 reject_low 6 ALIGNMENT 602 Y12-8j13.q1k chr08 301 1053 543610 544371 F 753 95.62 1302 reject_low 37 ALIGNMENT 555 Y12-8j13.q1k chr08 36 632 549041 549637 F 597 98.66 1302 reject_low 27 ALIGNMENT 0 Y12-8j13.q1k chr15 384 62 594760 594759 C 323 0.00 1302 reject_low 39 ALIGNMENT 989 Y12-8j13.p1k chr14 23 1165 520759 521915 F 1143 96.68 1374 reject_low 23 ALIGNMENT 0 Y12-8j13.q1k chr16 62 474 850353 850352 F 413 0.00 1302 reject_low 41 ALIGNMENT 0 Y12-8j13.q1k chr13 62 320 357024 357023 F 259 0.00 1302 ambiguous_trans 1 ALIGNMENT 0 Y12-8j13.q1k chr14 62 320 96630 96629 F 259 0.00 1302 ambiguous_trans 2 ALIGNMENT 407 Y12-8j13.q1k chr01 36 632 165562 166163 F 597 90.79 1302 reject_low 36 ALIGNMENT 0 Y12-8j13.q1k chr16 860 633 844409 844408 C 228 0.00 1302 reject_low 30 ALIGNMENT 0 Y12-8j13.q1k chr15 300 62 600735 600734 C 239 0.00 1302 reject_low 32 ALIGNMENT 0 Y12-8j13.q1k chr07 62 300 817398 817397 F 239 0.00 1302 reject_low 31 ALIGNMENT 0 Y12-8j13.q1k chr13 300 62 190084 190083 C 239 0.00 1302 ambiguous_trans 4 ALIGNMENT 561 Y12-8j13.q1k chr02 632 36 259576 260172 C 597 98.99 1302 reject_low 26 ALIGNMENT 0 Y12-8j13.q1k chr07 633 860 823311 823310 F 228 0.00 1302 reject_low 24 ALIGNMENT 989 Y12-8j13.p1k chr10 23 1165 479560 480716 F 1143 96.68 1374 reject_low 22 ALIGNMENT 535 Y12-8j13.q1k chr04 632 36 1095762 1096364 C 597 97.65 1302 reject_low 29 ALIGNMENT 989 Y12-8j13.p1k chr13 1165 23 375866 377022 C 1143 96.68 1374 ambiguous_trans 3 ALIGNMENT 992 Y12-8j13.p1k chr16 1165 23 807807 808963 C 1143 96.76 1374 reject_low 18 ALIGNMENT 988 Y12-8j13.p1k chr12 17 1165 652414 653579 F 1149 96.52 1374 reject_low 19 ALIGNMENT 0 Y12-8j13.q1k chr01 633 860 166163 166162 F 228 0.00 1302 reject_low 36 ALIGNMENT 0 Y12-8j13.q1k chr16 62 320 850645 850644 F 259 0.00 1302 reject_low 6 ALIGNMENT 595 Y12-8j13.q1k chr13 301 1152 372696 373570 F 852 92.61 1302 ambiguous_trans 3 ALIGNMENT 0 Y12-8j13.q1k chr08 62 300 543610 543609 F 239 0.00 1302 reject_low 37 ALIGNMENT 967 Y12-8j14.q1k chr15 1154 38 305204 306334 C 1117 96.24 1297 accept 0 ALIGNMENT 973 Y12-8j14.p1k chr15 19 1193 302545 303736 F 1175 95.74 1389 accept 0 ALIGNMENT 25 Y12-8j15.q1k chr14 340 381 720276 720317 F 42 95.24 1260 reject_low 3 ALIGNMENT 25 Y12-8j15.q1k chr02 431 334 780344 780441 C 98 83.67 1260 reject_low 2 ALIGNMENT 33 Y12-8j15.q1k chr15 407 346 236963 237024 C 62 95.16 1260 reject_low 1 ALIGNMENT 0 Y12-8j15.q1k chr15 345 77 237025 237024 C 269 0.00 1260 reject_low 1 ALIGNMENT 0 Y12-8j15.q1k chr02 333 77 780442 780441 C 257 0.00 1260 reject_low 2 ALIGNMENT 0 Y12-8j15.q1k chr15 761 408 236964 236963 C 354 0.00 1260 reject_low 1 ALIGNMENT 0 Y12-8j15.q1k chr14 77 339 720276 720275 F 263 0.00 1260 reject_low 3 ALIGNMENT 967 Y12-8j15.p1k chr16 1135 17 383551 384683 C 1119 96.51 1379 accept 0 ALIGNMENT 0 Y12-8j15.q1k chr02 761 432 780345 780344 C 330 0.00 1260 reject_low 2 ALIGNMENT 801 Y12-8j15.q1k chr16 36 1052 379082 380091 F 1017 95.18 1260 accept 0 ALIGNMENT 0 Y12-8j15.q1k chr14 382 761 720317 720316 F 380 0.00 1260 reject_low 3 ALIGNMENT 21 Y12-8j16.p1k chr14 472 430 605724 605766 C 43 95.35 1387 reject_low 10 ALIGNMENT 0 Y12-8j16.p1k chr13 824 186 586630 586629 C 639 0.00 1387 reject_low 7 ALIGNMENT 0 Y12-8j16.p1k chr13 105 62 586709 586708 C 44 0.00 1387 reject_low 7 ALIGNMENT 0 Y12-8j16.p1k chr10 62 94 378264 378263 F 33 0.00 1387 reject_low 2 ALIGNMENT 0 Y12-8j16.p1k chr14 824 473 605725 605724 C 352 0.00 1387 reject_low 10 ALIGNMENT 20 Y12-8j16.p1k chr14 431 473 605724 605766 F 43 95.35 1387 reject_low 12 ALIGNMENT 0 Y12-8j16.p1k chr07 824 188 412290 412289 C 637 0.00 1387 reject_low 1 ALIGNMENT 81 Y12-8j16.p1k chr13 184 98 420582 420668 C 87 97.70 1387 reject_low 4 ALIGNMENT 0 Y12-8j16.p1k chr05 62 445 118578 118577 F 384 0.00 1387 reject_low 11 ALIGNMENT 0 Y12-8j16.p1k chr13 824 185 420583 420582 C 640 0.00 1387 reject_low 4 ALIGNMENT 76 Y12-8j16.p1k chr07 106 185 823487 823566 F 80 98.75 1387 reject_low 5 ALIGNMENT 73 Y12-8j16.p1k chr11 185 106 307783 307862 C 80 97.50 1387 reject_low 9 ALIGNMENT 0 Y12-8j16.p1k chr05 477 824 118608 118607 F 348 0.00 1387 reject_low 11 ALIGNMENT 83 Y12-8j16.p1k chr05 98 186 469444 469532 F 89 97.75 1387 reject_low 3 ALIGNMENT 76 Y12-8j16.p1k chr13 185 106 372438 372517 C 80 98.75 1387 reject_low 6 ALIGNMENT 76 Y12-8j16.p1k chr13 185 106 586629 586708 C 80 98.75 1387 reject_low 7 ALIGNMENT 81 Y12-8j16.p1k chr10 95 185 378264 378355 F 91 96.70 1387 reject_low 2 ALIGNMENT 0 Y12-8j16.p1k chr10 186 824 378355 378354 F 639 0.00 1387 reject_low 2 ALIGNMENT 0 Y12-8j16.p1k chr05 62 97 469444 469443 F 36 0.00 1387 reject_low 3 ALIGNMENT 0 Y12-8j16.p1k chr05 187 824 469532 469531 F 638 0.00 1387 reject_low 3 ALIGNMENT 0 Y12-8j16.p1k chr14 474 824 605766 605765 F 351 0.00 1387 reject_low 12 ALIGNMENT 0 Y12-8j16.p1k chr07 62 105 823487 823486 F 44 0.00 1387 reject_low 5 ALIGNMENT 73 Y12-8j16.p1k chr07 187 92 412289 412385 C 96 92.71 1387 reject_low 1 ALIGNMENT 0 Y12-8j16.p1k chr05 62 103 438694 438693 F 42 0.00 1387 reject_low 8 ALIGNMENT 21 Y12-8j16.p1k chr05 446 476 118578 118608 F 31 100.00 1387 reject_low 11 ALIGNMENT 0 Y12-8j16.p1k chr13 105 62 372518 372517 C 44 0.00 1387 reject_low 6 ALIGNMENT 0 Y12-8j16.p1k chr07 91 62 412386 412385 C 30 0.00 1387 reject_low 1 ALIGNMENT 0 Y12-8j16.p1k chr11 105 62 307863 307862 C 44 0.00 1387 reject_low 9 ALIGNMENT 0 Y12-8j16.p1k chr05 186 824 438775 438774 F 639 0.00 1387 reject_low 8 ALIGNMENT 0 Y12-8j16.p1k chr13 824 186 372439 372438 C 639 0.00 1387 reject_low 6 ALIGNMENT 0 Y12-8j16.p1k chr14 62 430 605724 605723 F 369 0.00 1387 reject_low 12 ALIGNMENT 75 Y12-8j16.p1k chr05 104 185 438694 438775 F 82 97.56 1387 reject_low 8 ALIGNMENT 0 Y12-8j16.p1k chr13 97 62 420669 420668 C 36 0.00 1387 reject_low 4 ALIGNMENT 0 Y12-8j16.p1k chr11 824 186 307784 307783 C 639 0.00 1387 reject_low 9 ALIGNMENT 791 Y12-8j16.p1k chr12 1121 23 686922 688018 C 1099 93.27 1387 accept 0 ALIGNMENT 0 Y12-8j16.p1k chr07 186 824 823566 823565 F 639 0.00 1387 reject_low 5 ALIGNMENT 947 Y12-8j16.q1k chr12 35 1190 683442 684605 F 1156 95.33 1316 accept 0 ALIGNMENT 0 Y12-8j16.p1k chr14 429 62 605767 605766 C 368 0.00 1387 reject_low 10 ALIGNMENT 33 Y12-8j17.p1k chr04 551 660 17922 18026 F 110 80.91 1440 reject_low 1 ALIGNMENT 123 Y12-8j17.p1k chr14 313 784 16230 16694 F 472 76.91 1440 accept_tel 0 ALIGNMENT 0 Y12-8j17.p1k chr04 485 550 17856 17921 F 66 0.00 1440 reject_low 1 ALIGNMENT 25 Y12-8j17.p1k chr04 360 484 17733 17855 F 125 74.40 1440 reject_low 1 ALIGNMENT 0 Y12-8j18.q1k chr10 609 256 120842 120841 C 354 0.00 1352 reject_low 19 ALIGNMENT 37 Y12-8j18.q1k chr10 406 309 121095 121195 C 98 79.59 1352 reject_low 16 ALIGNMENT 0 Y12-8j18.q1k chr10 199 185 120897 120929 C 15 0.00 1352 reject_low 19 ALIGNMENT 0 Y12-8j18.q1k chr11 79 62 144787 144786 C 18 0.00 1352 reject_low 15 ALIGNMENT 0 Y12-8j18.q1k chr10 86 62 121202 121201 C 25 0.00 1352 reject_low 9 ALIGNMENT 1052 Y12-8j18.p1k chr11 18 1196 507912 509108 F 1179 97.29 1394 accept_chi 0 ALIGNMENT 35 Y12-8j18.q1k chr10 255 200 120841 120896 C 56 87.50 1352 reject_low 19 ALIGNMENT 29 Y12-8j18.q1k chr10 412 363 121146 121195 C 50 86.00 1352 reject_low 17 ALIGNMENT 0 Y12-8j18.q1k chr10 609 239 120931 120930 C 371 0.00 1352 reject_low 12 ALIGNMENT 56 Y12-8j18.q1k chr10 238 69 120930 121105 C 170 78.24 1352 reject_low 12 ALIGNMENT 0 Y12-8j18.q1k chr11 413 499 142588 142647 F 87 0.00 1352 reject_low 3 ALIGNMENT 0 Y12-8j18.q1k chr10 609 413 121147 121146 C 197 0.00 1352 reject_low 17 ALIGNMENT 0 Y12-8j18.q1k chr10 609 353 120925 120924 C 257 0.00 1352 reject_low 9 ALIGNMENT 103 Y12-8j18.q1k chr11 238 51 144682 144869 C 188 85.11 1352 reject_low 4 ALIGNMENT 0 Y12-8j18.q1k chr10 308 62 121196 121195 C 247 0.00 1352 reject_low 16 ALIGNMENT 65 Y12-8j18.q1k chr10 292 86 120930 121145 C 207 77.78 1352 reject_low 14 ALIGNMENT 119 Y12-8j18.q1k chr11 500 679 142648 142827 F 180 88.89 1352 reject_low 3 ALIGNMENT 0 Y12-8j18.q1k chr11 609 401 144737 144736 C 209 0.00 1352 reject_low 6 ALIGNMENT 77 Y12-8j18.q1k chr10 352 87 120924 121201 C 266 77.07 1352 reject_low 9 ALIGNMENT 0 Y12-8j18.q1k chr11 241 62 144949 144948 C 180 0.00 1352 reject_low 10 ALIGNMENT 77 Y12-8j18.q1k chr11 400 242 144790 144948 C 159 83.02 1352 reject_low 10 ALIGNMENT 0 Y12-8j18.q1k chr10 609 407 121096 121095 C 203 0.00 1352 reject_low 16 ALIGNMENT 39 Y12-8j18.q1k chr10 184 86 120930 121031 C 99 80.81 1352 reject_low 19 ALIGNMENT 0 Y12-8j18.q1k chr10 85 62 121146 121145 C 24 0.00 1352 reject_low 14 ALIGNMENT 0 Y12-8j18.q1k chr11 62 254 142409 142408 F 193 0.00 1352 reject_low 3 ALIGNMENT 0 Y12-8j18.q1k chr11 158 62 144978 144977 C 97 0.00 1352 reject_low 6 ALIGNMENT 0 Y12-8j18.q1k chr10 609 202 120842 120841 C 408 0.00 1352 reject_low 18 ALIGNMENT 0 Y12-8j18.q1k chr10 85 62 121032 121031 C 24 0.00 1352 reject_low 19 ALIGNMENT 26 Y12-8j18.q1k chr11 363 412 142538 142587 F 50 84.00 1352 reject_low 3 ALIGNMENT 0 Y12-8j18.q1k chr11 609 185 144683 144682 C 425 0.00 1352 reject_low 15 ALIGNMENT 53 Y12-8j18.q1k chr11 184 80 144682 144786 C 105 83.81 1352 reject_low 15 ALIGNMENT 295 Y12-8j18.q1k chr11 352 36 144676 144992 C 317 97.79 1352 reject_low 2 ALIGNMENT 76 Y12-8j18.q1k chr10 406 201 120981 121195 C 206 79.61 1352 reject_low 11 ALIGNMENT 0 Y12-8j18.q1k chr11 609 239 144683 144682 C 371 0.00 1352 reject_low 4 ALIGNMENT 0 Y12-8j18.q1k chr10 609 407 120982 120981 C 203 0.00 1352 reject_low 11 ALIGNMENT 0 Y12-8j18.q1k chr10 200 62 121196 121195 C 139 0.00 1352 reject_low 11 ALIGNMENT 0 Y12-8j18.q1k chr10 254 62 121196 121195 C 193 0.00 1352 reject_low 13 ALIGNMENT 0 Y12-8j18.q1k chr11 609 401 144845 144844 C 209 0.00 1352 reject_low 8 ALIGNMENT 0 Y12-8j18.q1k chr11 609 401 144791 144790 C 209 0.00 1352 reject_low 10 ALIGNMENT 0 Y12-8j18.q1k chr10 609 408 120924 120923 C 202 0.00 1352 reject_low 7 ALIGNMENT 0 Y12-8j18.q1k chr11 609 293 144683 144682 C 317 0.00 1352 reject_low 5 ALIGNMENT 82 Y12-8j18.q1k chr11 400 276 144844 144968 C 125 88.80 1352 reject_low 8 ALIGNMENT 0 Y12-8j18.q1k chr10 609 404 121042 121041 C 206 0.00 1352 reject_low 13 ALIGNMENT 151 Y12-8j18.q1k chr11 292 96 144682 144878 C 197 92.39 1352 reject_low 5 ALIGNMENT 69 Y12-8j18.q1k chr10 403 255 121041 121195 C 149 82.55 1352 reject_low 13 ALIGNMENT 602 Y12-8j18.q1k chr11 1071 150 144015 144932 C 922 89.26 1352 accept_chi 1 ALIGNMENT 0 Y12-8j18.q1k chr10 609 293 120931 120930 C 317 0.00 1352 reject_low 14 ALIGNMENT 23 Y12-8j18.q1k chr11 255 307 142409 142461 F 53 81.13 1352 reject_low 3 ALIGNMENT 0 Y12-8j18.q1k chr11 308 362 142462 142537 F 55 0.00 1352 reject_low 3 ALIGNMENT 0 Y12-8j18.q1k chr11 95 62 144879 144878 C 34 0.00 1352 reject_low 5 ALIGNMENT 0 Y12-8j18.q1k chr11 609 353 144677 144676 C 257 0.00 1352 reject_low 2 ALIGNMENT 0 Y12-8j18.q1k chr10 141 62 120901 120900 C 80 0.00 1352 reject_low 18 ALIGNMENT 0 Y12-8j18.q1k chr10 146 62 121196 121195 C 85 0.00 1352 reject_low 7 ALIGNMENT 0 Y12-8j18.q1k chr11 275 62 144969 144968 C 214 0.00 1352 reject_low 8 ALIGNMENT 0 Y12-8j18.q1k chr11 149 62 144933 144932 C 88 0.00 1352 accept_chi 1 ALIGNMENT 0 Y12-8j18.q1k chr10 362 62 121196 121195 C 301 0.00 1352 reject_low 17 ALIGNMENT 121 Y12-8j18.q1k chr11 400 159 144736 144977 C 242 83.47 1352 reject_low 6 ALIGNMENT 39 Y12-8j18.q1k chr10 201 142 120841 120900 C 60 88.33 1352 reject_low 18 ALIGNMENT 93 Y12-8j18.q1k chr10 407 147 120923 121195 C 261 79.31 1352 reject_low 7 ALIGNMENT 897 Y12-8j19.p1k chr15 20 1100 978893 979976 F 1081 95.28 1316 accept 0 ALIGNMENT 918 Y12-8j19.q1k chr15 1136 36 983178 984276 C 1101 95.55 1282 accept 0 ALIGNMENT 896 Y12-8j20.q1k chr05 37 1040 24942 25958 F 1004 97.51 1237 accept 0 ALIGNMENT 935 Y12-8j20.p1k chr05 1208 20 28010 29216 C 1189 93.27 1373 accept 0 ALIGNMENT 391 Y12-8j21.q1k chr14 370 803 502818 503252 F 434 98.62 1252 reject_low 1 ALIGNMENT 928 Y12-8j21.q1k chr14 36 1115 502484 503567 F 1080 96.11 1252 accept 0 ALIGNMENT 0 Y12-8j21.q1k chr14 62 369 502818 502817 F 308 0.00 1252 reject_low 1 ALIGNMENT 947 Y12-8j21.p1k chr14 1128 31 505527 506641 C 1098 96.54 1325 accept 0 ALIGNMENT 1016 Y12-8j22.p1k chr11 19 1210 653260 654465 F 1192 96.39 1335 accept 0 ALIGNMENT 0 Y12-8j23.q1k chr06 567 62 160589 160588 C 506 0.00 1223 reject_low 3 ALIGNMENT 0 Y12-8j23.q1k chr13 567 62 44405 44404 C 506 0.00 1223 reject_low 4 ALIGNMENT 21 Y12-8j23.q1k chr06 597 568 160559 160588 C 30 93.33 1223 reject_low 3 ALIGNMENT 21 Y12-8j23.q1k chr13 597 568 44375 44404 C 30 93.33 1223 reject_low 4 ALIGNMENT 0 Y12-8j23.q1k chr06 864 598 160560 160559 C 267 0.00 1223 reject_low 3 ALIGNMENT 0 Y12-8j23.q1k chr13 864 598 44376 44375 C 267 0.00 1223 reject_low 4 ALIGNMENT 937 Y12-8j23.q1k chr01 37 1185 220104 221273 F 1149 94.43 1223 ambiguous_tel 1 ALIGNMENT 940 Y12-8j23.q1k chr08 37 1185 540715 541884 F 1149 94.52 1223 ambiguous_tel 0 ALIGNMENT 299 Y12-8j23.p1k chr14 808 131 505802 506466 C 678 83.04 1327 accept 2 ALIGNMENT 45 Y12-8j24.p1k chr03 973 1047 168290 168366 F 75 88.00 1308 reject_low 2 ALIGNMENT 49 Y12-8j24.p1k chr04 972 1047 802719 802796 F 76 89.47 1308 reject_low 1 ALIGNMENT 0 Y12-8j24.p1k chr03 62 972 168290 168289 F 911 0.00 1308 reject_low 2 ALIGNMENT 933 Y12-8j24.q1k chr04 1114 35 654733 655824 C 1080 96.57 1249 accept_trans 0 ALIGNMENT 937 Y12-8j24.p1k chr04 24 1059 644189 645232 F 1036 97.68 1308 accept_trans 0 ALIGNMENT 0 Y12-8j24.p1k chr04 62 971 802719 802718 F 910 0.00 1308 reject_low 1 ALIGNMENT 651 Y12-8k02.p1k chr10 17 996 402986 403956 F 980 90.00 1475 accept 0 ALIGNMENT 953 Y12-8k03.p1k chr16 1192 16 687217 688412 C 1177 94.90 1421 accept 0 ALIGNMENT 920 Y12-8k03.q1k chr16 36 1281 683780 685038 F 1246 92.78 1363 accept 0 ALIGNMENT 911 Y12-8k04.p1k chr04 1058 21 1141646 1142699 C 1038 97.40 1334 accept 0 ALIGNMENT 901 Y12-8k04.q1k chr04 29 1115 1138491 1139591 F 1087 95.49 1289 accept 0 ALIGNMENT 970 Y12-8k05.p1k chr12 1093 30 466163 467243 C 1064 97.46 1393 accept 1 ALIGNMENT 993 Y12-8k05.q1k chr12 36 1119 461153 462253 F 1084 97.79 1314 accept 1 ALIGNMENT 0 Y12-8k05.q1k chr12 595 899 490543 490542 F 305 0.00 1314 reject_low 2 ALIGNMENT 547 Y12-8k05.q1k chr12 36 594 489984 490543 F 559 99.46 1314 reject_low 2 ALIGNMENT 993 Y12-8k05.q1k chr12 36 1119 452016 453116 F 1084 97.79 1314 accept 0 ALIGNMENT 970 Y12-8k05.p1k chr12 1093 30 457026 458106 C 1064 97.46 1393 accept 0 ALIGNMENT 983 Y12-8k06.p1k chr12 1160 21 454518 455677 C 1140 96.58 1403 reject_low 1 ALIGNMENT 983 Y12-8k06.p1k chr12 1160 21 463655 464814 C 1140 96.58 1403 accept 0 ALIGNMENT 0 Y12-8k06.q1k chr12 62 561 451419 451418 F 500 0.00 1324 reject_low 1 ALIGNMENT 129 Y12-8k06.q1k chr12 909 1127 489754 489981 F 219 88.13 1324 reject_low 2 ALIGNMENT 0 Y12-8k06.q1k chr12 62 908 489754 489753 F 847 0.00 1324 reject_low 2 ALIGNMENT 787 Y12-8k06.q1k chr12 36 1127 460010 461150 F 1092 92.22 1324 accept 0 ALIGNMENT 402 Y12-8k06.q1k chr12 562 1127 451419 452013 F 566 91.70 1324 reject_low 1 ALIGNMENT 981 Y12-8k07.p1k chr07 19 1150 964394 965539 F 1132 96.73 1440 accept 0 ALIGNMENT 1027 Y12-8k07.q1k chr07 1244 34 968899 970124 C 1211 95.95 1389 accept 0 ALIGNMENT 946 Y12-8k09.p1k chr08 16 1210 7865 9063 F 1195 94.39 1452 accept 0 ALIGNMENT 29 Y12-8k09.p1k chr05 321 375 566891 566945 F 55 87.27 1452 reject_low 4 ALIGNMENT 0 Y12-8k09.p1k chr11 908 376 665069 665068 C 533 0.00 1452 reject_low 3 ALIGNMENT 73 Y12-8k09.p1k chr05 144 300 566695 566862 F 157 84.71 1452 reject_low 4 ALIGNMENT 0 Y12-8k09.p1k chr07 908 302 912 911 C 607 0.00 1452 reject_low 6 ALIGNMENT 68 Y12-8k09.p1k chr11 375 144 665068 665306 C 232 80.17 1452 reject_low 3 ALIGNMENT 915 Y12-8k09.q1k chr03 35 1157 305164 306302 F 1123 94.66 1343 ambiguous_tel 2 ALIGNMENT 0 Y12-8k09.p1k chr03 908 377 1179 1178 C 532 0.00 1452 reject_low 5 ALIGNMENT 958 Y12-8k09.q1k chr12 35 1135 1060561 1061672 F 1101 96.37 1343 ambiguous_tel 1 ALIGNMENT 0 Y12-8k09.p1k chr05 376 908 566945 566944 F 533 0.00 1452 reject_low 4 ALIGNMENT 0 Y12-8k09.p1k chr07 143 62 1080 1079 C 82 0.00 1452 reject_low 6 ALIGNMENT 0 Y12-8k09.p1k chr03 320 298 1234 1264 C 23 0.00 1452 reject_low 5 ALIGNMENT 24 Y12-8k09.p1k chr07 191 144 1032 1079 C 48 85.42 1452 reject_low 6 ALIGNMENT 0 Y12-8k09.p1k chr07 192 192 1020 1031 C 1 0.00 1452 reject_low 6 ALIGNMENT 56 Y12-8k09.p1k chr07 301 193 911 1019 C 109 86.24 1452 reject_low 6 ALIGNMENT 24 Y12-8k09.p1k chr03 376 321 1178 1233 C 56 83.93 1452 reject_low 5 ALIGNMENT 0 Y12-8k09.p1k chr05 301 320 566863 566890 F 20 0.00 1452 reject_low 4 ALIGNMENT 0 Y12-8k09.p1k chr03 143 62 1430 1429 C 82 0.00 1452 reject_low 5 ALIGNMENT 0 Y12-8k09.p1k chr11 143 62 665307 665306 C 82 0.00 1452 reject_low 3 ALIGNMENT 58 Y12-8k09.p1k chr03 297 144 1265 1429 C 154 81.82 1452 reject_low 5 ALIGNMENT 0 Y12-8k09.p1k chr05 62 143 566695 566694 F 82 0.00 1452 reject_low 4 ALIGNMENT 556 Y12-8k10.q1k chr05 51 1043 443648 444643 F 993 87.41 1298 ambiguous_trans 18 ALIGNMENT 835 Y12-8k10.q1k chr15 1076 43 599452 600493 C 1034 95.45 1298 ambiguous_trans 6 ALIGNMENT 669 Y12-8k10.q1k chr16 1043 43 849085 850089 C 1001 91.01 1298 ambiguous_trans 16 ALIGNMENT 872 Y12-8k10.q1k chr07 1109 43 540363 541442 C 1067 95.97 1298 ambiguous_trans 3 ALIGNMENT 887 Y12-8k10.q1k chr13 43 1109 357245 358324 F 1067 96.44 1298 ambiguous_trans 2 ALIGNMENT 669 Y12-8k10.q1k chr08 43 1043 543851 544855 F 1001 91.01 1298 ambiguous_trans 14 ALIGNMENT 536 Y12-8k10.q1k chr04 986 51 985939 986873 C 936 87.82 1298 ambiguous_trans 21 ALIGNMENT 609 Y12-8k10.q1k chr15 1043 43 122376 123380 C 1001 89.01 1298 ambiguous_trans 17 ALIGNMENT 864 Y12-8k10.q1k chr10 1109 43 482560 483639 C 1067 95.69 1298 ambiguous_trans 4 ALIGNMENT 0 Y12-8k10.q1k chr13 134 889 378621 378620 F 756 0.00 1298 ambiguous_trans 23 ALIGNMENT 83 Y12-8k10.q1k chr13 43 134 362827 362918 F 92 100.00 1298 ambiguous_trans 22 ALIGNMENT 864 Y12-8k10.q1k chr14 43 1109 96851 97930 F 1067 95.69 1298 ambiguous_trans 5 ALIGNMENT 831 Y12-8k10.q1k chr07 43 1043 817639 818643 F 1001 96.40 1298 ambiguous_trans 8 ALIGNMENT 819 Y12-8k10.q1k chr13 43 1043 372943 373947 F 1001 96.00 1298 ambiguous_trans 11 ALIGNMENT 669 Y12-8k10.q1k chr13 1043 43 188838 189842 C 1001 91.01 1298 ambiguous_trans 15 ALIGNMENT 819 Y12-8k10.q1k chr05 43 1043 492738 493742 F 1001 96.00 1298 ambiguous_trans 9 ALIGNMENT 675 Y12-8k10.q1k chr16 43 1043 850872 851876 F 1001 91.21 1298 ambiguous_trans 12 ALIGNMENT 669 Y12-8k10.q1k chr04 1043 43 1100436 1101440 C 1001 91.01 1298 ambiguous_trans 13 ALIGNMENT 83 Y12-8k10.q1k chr13 43 133 378531 378621 F 91 100.00 1298 ambiguous_trans 23 ALIGNMENT 0 Y12-8k10.q1k chr13 135 889 362918 362917 F 755 0.00 1298 ambiguous_trans 22 ALIGNMENT 947 Y12-8k10.p1k chr10 1064 26 34889 35943 C 1039 97.69 1363 accept 0 ALIGNMENT 556 Y12-8k10.q1k chr12 51 1043 476230 477225 F 993 87.41 1298 ambiguous_trans 19 ALIGNMENT 556 Y12-8k10.q1k chr13 1043 51 201005 202000 C 993 87.41 1298 ambiguous_trans 20 ALIGNMENT 819 Y12-8k10.q1k chr12 43 1043 215328 216332 F 1001 96.00 1298 ambiguous_trans_ua 10 ALIGNMENT 832 Y12-8k10.q1k chr02 1076 43 264210 265251 C 1034 95.36 1298 ambiguous_trans 7 ALIGNMENT 893 Y12-8k10.q1k chr02 1109 43 225635 226714 C 1067 96.63 1298 ambiguous_trans 1 ALIGNMENT 964 Y12-8k11.q1k chr09 30 1205 359385 360561 F 1176 95.49 1368 accept 0 ALIGNMENT 882 Y12-8k11.p1k chr09 1024 19 363892 364911 C 1006 97.91 1375 accept 0 ALIGNMENT 944 Y12-8k13.p1k chr12 1079 18 285723 286795 C 1062 97.27 1383 accept 0 ALIGNMENT 898 Y12-8k13.q1k chr12 37 1116 281882 282979 F 1080 95.56 1315 accept 0 ALIGNMENT 977 Y12-8k14.p1k chr14 20 1121 199580 200690 F 1102 96.73 1400 accept 0 ALIGNMENT 907 Y12-8k14.q1k chr14 1138 39 204232 205339 C 1100 95.09 1303 accept 0 ALIGNMENT 902 Y12-8k15.q1k chr13 1054 41 314997 316024 C 1014 97.34 1302 accept 0 ALIGNMENT 966 Y12-8k15.p1k chr13 24 1144 311542 312675 F 1121 97.06 1394 accept 0 ALIGNMENT 826 Y12-8k16.q1k chr14 1005 37 198102 199084 C 969 95.36 1294 accept 0 ALIGNMENT 1005 Y12-8k16.p1k chr14 18 1187 193234 194409 F 1170 96.67 1436 accept 0 ALIGNMENT 828 Y12-8k17.q1k chr03 30 1105 204996 206092 F 1076 94.89 1266 accept 0 ALIGNMENT 954 Y12-8k17.p1k chr03 1180 47 208683 209809 C 1134 95.59 1457 accept 0 ALIGNMENT 849 Y12-8k18.q1k chr15 35 1015 183564 184560 F 981 97.15 1250 accept_chi 1 ALIGNMENT 1038 Y12-8k18.p1k chr10 22 1218 607394 608590 F 1197 96.74 1423 accept_chi 0 ALIGNMENT 1009 Y12-8k19.p1k chr04 17 1219 1040116 1041326 F 1203 95.68 1378 accept 0 ALIGNMENT 944 Y12-8k19.q1k chr04 1105 42 1041223 1042303 C 1064 97.46 1281 accept 0 ALIGNMENT 410 Y12-8k20.p1k chr08 208 842 287982 288616 F 635 89.45 1336 reject_low 4 ALIGNMENT 0 Y12-8k20.p1k chr09 907 813 19714 19713 C 95 0.00 1336 reject_low 7 ALIGNMENT 0 Y12-8k20.p1k chr09 207 62 20320 20319 C 146 0.00 1336 reject_low 7 ALIGNMENT 446 Y12-8k20.p1k chr04 208 843 1155106 1155741 F 636 91.35 1336 reject_low 2 ALIGNMENT 0 Y12-8k20.p1k chr04 62 207 1155106 1155105 F 146 0.00 1336 reject_low 2 ALIGNMENT 424 Y12-8k20.p1k chr08 19 860 291625 292466 F 842 84.32 1336 reject_low 1 ALIGNMENT 0 Y12-8k20.p1k chr14 242 62 773416 773415 C 181 0.00 1336 reject_low 8 ALIGNMENT 0 Y12-8k20.p1k chr10 358 62 733007 733006 C 297 0.00 1336 reject_low 9 ALIGNMENT 0 Y12-8k20.p1k chr10 189 62 27726 27725 C 128 0.00 1336 reject_low 6 ALIGNMENT 0 Y12-8k20.p1k chr10 907 843 27071 27070 C 65 0.00 1336 reject_low 6 ALIGNMENT 128 Y12-8k20.p1k chr13 812 243 288261 288830 C 570 75.44 1336 reject_low 5 ALIGNMENT 0 Y12-8k20.p1k chr08 62 207 287982 287981 F 146 0.00 1336 reject_low 4 ALIGNMENT 0 Y12-8k20.p1k chr10 907 530 732837 732836 C 378 0.00 1336 reject_low 9 ALIGNMENT 0 Y12-8k20.p1k chr14 907 530 773130 773129 C 378 0.00 1336 reject_low 8 ALIGNMENT 963 Y12-8k20.p1k chr04 19 1130 1163658 1164783 F 1112 96.58 1336 accept 0 ALIGNMENT 891 Y12-8k20.q1k chr04 1109 35 1167095 1168191 C 1075 95.26 1257 accept 0 ALIGNMENT 0 Y12-8k20.p1k chr08 843 907 288616 288615 F 65 0.00 1336 reject_low 4 ALIGNMENT 29 Y12-8k20.p1k chr10 529 359 732836 733006 C 171 73.68 1336 reject_low 9 ALIGNMENT 101 Y12-8k20.p1k chr10 842 190 27070 27725 C 653 73.51 1336 reject_low 6 ALIGNMENT 39 Y12-8k20.p1k chr14 529 243 773129 773415 C 287 72.13 1336 reject_low 8 ALIGNMENT 0 Y12-8k20.p1k chr04 844 907 1155741 1155740 F 64 0.00 1336 reject_low 2 ALIGNMENT 0 Y12-8k20.p1k chr13 242 62 288831 288830 C 181 0.00 1336 reject_low 5 ALIGNMENT 0 Y12-8k20.p1k chr13 907 813 288262 288261 C 95 0.00 1336 reject_low 5 ALIGNMENT 0 Y12-8k20.p1k chr04 844 907 1161133 1161132 F 64 0.00 1336 reject_low 3 ALIGNMENT 0 Y12-8k20.p1k chr04 62 207 1160498 1160497 F 146 0.00 1336 reject_low 3 ALIGNMENT 446 Y12-8k20.p1k chr04 208 843 1160498 1161133 F 636 91.35 1336 reject_low 3 ALIGNMENT 0 Y12-8k20.p1k chr08 861 907 292466 292465 F 47 0.00 1336 reject_low 1 ALIGNMENT 74 Y12-8k20.p1k chr09 812 208 19713 20319 C 605 72.56 1336 reject_low 7 ALIGNMENT 1019 Y12-8k21.p1k chr14 1250 16 99128 100359 C 1235 95.22 1381 ambiguous_trans 20 ALIGNMENT 1028 Y12-8k21.p1k chr15 16 1250 119872 121103 F 1235 95.47 1381 ambiguous_trans 9 ALIGNMENT 1028 Y12-8k21.p1k chr12 1250 16 217605 218836 C 1235 95.47 1381 ambiguous_trans_ua 6 ALIGNMENT 971 Y12-8k21.q1k chr13 35 1170 836366 837509 F 1136 96.30 1240 accept 0 ALIGNMENT 1011 Y12-8k21.p1k chr13 16 1168 198501 199649 F 1153 96.88 1381 ambiguous_trans 22 ALIGNMENT 1028 Y12-8k21.p1k chr13 16 1250 186334 187565 F 1235 95.47 1381 ambiguous_trans 7 ALIGNMENT 1055 Y12-8k21.p1k chr02 16 1250 261740 262971 F 1235 96.19 1381 ambiguous_trans 2 ALIGNMENT 1022 Y12-8k21.p1k chr13 1250 16 359522 360753 C 1235 95.30 1381 ambiguous_trans 17 ALIGNMENT 1018 Y12-8k21.p1k chr16 16 1250 846578 847812 F 1235 95.22 1381 ambiguous_trans 21 ALIGNMENT 1028 Y12-8k21.p1k chr16 1250 16 807161 808392 C 1235 95.47 1381 ambiguous_trans 10 ALIGNMENT 1028 Y12-8k21.p1k chr13 1250 16 375220 376451 C 1235 95.47 1381 ambiguous_trans 8 ALIGNMENT 1028 Y12-8k21.p1k chr10 16 1250 480131 481362 F 1235 95.47 1381 ambiguous_trans 5 ALIGNMENT 1025 Y12-8k21.p1k chr04 16 1250 1097932 1099163 F 1235 95.38 1381 ambiguous_trans 14 ALIGNMENT 1055 Y12-8k21.p1k chr02 16 1250 223206 224437 F 1235 96.19 1381 ambiguous_trans 1 ALIGNMENT 1019 Y12-8k21.p1k chr12 1250 16 478498 479729 C 1235 95.22 1381 ambiguous_trans 19 ALIGNMENT 1022 Y12-8k21.p1k chr15 16 1250 596985 598216 F 1235 95.30 1381 ambiguous_trans 18 ALIGNMENT 1028 Y12-8k21.p1k chr05 1250 16 445916 447147 C 1235 95.47 1381 ambiguous_trans 4 ALIGNMENT 1025 Y12-8k21.p1k chr04 1250 16 989239 990470 C 1235 95.38 1381 ambiguous_trans 13 ALIGNMENT 1025 Y12-8k21.p1k chr01 1250 16 162762 163993 C 1235 95.38 1381 ambiguous_trans 11 ALIGNMENT 1055 Y12-8k21.p1k chr04 1250 16 880818 882049 C 1235 96.19 1381 ambiguous_trans 3 ALIGNMENT 983 Y12-8k21.p1k chr16 1250 16 853149 854380 C 1235 94.25 1381 ambiguous_trans 23 ALIGNMENT 1025 Y12-8k21.p1k chr04 1250 16 648017 649248 C 1235 95.38 1381 ambiguous_trans 12 ALIGNMENT 1025 Y12-8k21.p1k chr10 16 1250 474547 475778 F 1235 95.38 1381 ambiguous_trans 16 ALIGNMENT 1025 Y12-8k21.p1k chr07 1250 16 564367 565598 C 1235 95.38 1381 ambiguous_trans 15 ALIGNMENT 881 Y12-8k22.q1k chr10 1046 36 185511 186534 C 1011 96.24 1217 accept 0 ALIGNMENT 1015 Y12-8k22.p1k chr10 13 1174 181894 183067 F 1162 96.99 1306 accept 0 ALIGNMENT 59 Y12-8k23.p1k chr15 773 976 854273 854464 F 204 79.41 1371 reject_low 10 ALIGNMENT 0 Y12-8k23.p1k chr08 767 62 146670 146669 C 706 0.00 1371 reject_low 8 ALIGNMENT 0 Y12-8k23.p1k chr15 62 772 854273 854272 F 711 0.00 1371 reject_low 10 ALIGNMENT 0 Y12-8k23.p1k chr12 62 772 793552 793551 F 711 0.00 1371 reject_low 6 ALIGNMENT 65 Y12-8k23.q1k chr04 968 890 1175821 1175898 C 79 94.94 1279 reject_low 3 ALIGNMENT 56 Y12-8k23.p1k chr07 773 976 401619 401810 F 204 78.92 1371 reject_low 12 ALIGNMENT 80 Y12-8k23.p1k chr12 773 976 793552 793752 F 204 81.37 1371 reject_low 6 ALIGNMENT 0 Y12-8k23.q1k chr04 889 62 1175899 1175898 C 828 0.00 1279 reject_low 3 ALIGNMENT 0 Y12-8k23.q1k chr13 62 886 572872 572871 F 825 0.00 1279 reject_low 2 ALIGNMENT 0 Y12-8k23.p1k chr16 62 772 880382 880381 F 711 0.00 1371 reject_low 5 ALIGNMENT 61 Y12-8k23.p1k chr08 976 768 146473 146669 C 209 79.43 1371 reject_low 8 ALIGNMENT 62 Y12-8k23.p1k chr16 773 1020 880382 880613 F 248 79.03 1371 reject_low 5 ALIGNMENT 23 Y12-8k23.p1k chr15 16 43 968238 968266 F 28 96.43 1371 accept_trans 0 ALIGNMENT 0 Y12-8k23.q1k chr10 62 887 390952 390951 F 826 0.00 1279 reject_low 4 ALIGNMENT 57 Y12-8k23.p1k chr03 775 976 168386 168575 F 202 79.21 1371 reject_low 11 ALIGNMENT 74 Y12-8k23.p1k chr12 773 973 657024 657219 F 201 81.09 1371 reject_low 7 ALIGNMENT 60 Y12-8k23.p1k chr07 772 976 735986 736178 F 205 79.51 1371 reject_low 9 ALIGNMENT 64 Y12-8k23.q1k chr10 975 897 422845 422923 C 79 93.67 1279 reject_low 1 ALIGNMENT 0 Y12-8k23.p1k chr15 44 43 968267 968257 F 0 0.00 1371 accept_trans 0 ALIGNMENT 835 Y12-8k23.p1k chr15 44 1089 968258 969285 F 1046 94.84 1371 accept_trans 0 ALIGNMENT 863 Y12-8k23.q1k chr15 1104 39 976282 977343 C 1066 95.59 1279 accept_trans 0 ALIGNMENT 64 Y12-8k23.q1k chr10 888 968 390952 391031 F 81 93.83 1279 reject_low 4 ALIGNMENT 66 Y12-8k23.q1k chr13 887 968 572872 572954 F 82 93.90 1279 reject_low 2 ALIGNMENT 0 Y12-8k23.p1k chr07 62 771 735986 735985 F 710 0.00 1371 reject_low 9 ALIGNMENT 0 Y12-8k23.q1k chr10 896 62 422924 422923 C 835 0.00 1279 reject_low 1 ALIGNMENT 0 Y12-8k23.p1k chr03 62 774 168386 168385 F 713 0.00 1371 reject_low 11 ALIGNMENT 0 Y12-8k23.p1k chr12 62 772 657024 657023 F 711 0.00 1371 reject_low 7 ALIGNMENT 0 Y12-8k23.p1k chr07 62 772 401619 401618 F 711 0.00 1371 reject_low 12 ALIGNMENT 64 Y12-8k24.q1k chr13 445 355 223572 223658 C 91 95.60 869 accept 0 ALIGNMENT 968 Y12-8k24.p1k chr13 24 1228 217858 219065 F 1205 94.61 1313 accept 0 ALIGNMENT 68 Y12-8k24.q1k chr10 213 5 186268 186483 C 209 79.90 869 reject_low 1 ALIGNMENT 727 Y12-8l01.q1k chr09 31 1062 260844 261863 F 1032 92.05 1386 accept 0 ALIGNMENT 798 Y12-8l01.p1k chr09 1071 23 263837 264889 C 1049 93.33 1380 accept 0 ALIGNMENT 212 Y12-8l02.p1k chr15 113 875 1014103 1014864 F 763 77.06 1542 accept 0 ALIGNMENT 128 Y12-8l02.q1k chr15 713 12 1018362 1019028 C 702 77.21 1353 accept 0 ALIGNMENT 936 Y12-8l03.q1k chr10 1204 30 672444 673614 C 1175 94.81 1367 accept 0 ALIGNMENT 812 Y12-8l03.p1k chr10 9 958 669432 670368 F 950 97.05 1550 accept 0 ALIGNMENT 916 Y12-8l04.q1k chr14 36 1129 184692 185792 F 1094 95.98 1336 accept_chi 0 ALIGNMENT 656 Y12-8l04.p1k chr10 18 970 385882 386826 F 953 91.19 1444 accept_chi 1 ALIGNMENT 933 Y12-8l05.p1k chr14 19 1051 202891 203940 F 1033 97.58 1347 accept 0 ALIGNMENT 980 Y12-8l05.q1k chr14 1165 36 206650 207790 C 1130 96.64 1325 accept 0 ALIGNMENT 1034 Y12-8l06.q1k chr12 34 1178 462754 463907 F 1145 97.55 1344 accept 1 ALIGNMENT 989 Y12-8l06.p1k chr12 1147 30 456517 457649 C 1118 96.96 1395 accept 0 ALIGNMENT 989 Y12-8l06.p1k chr12 1147 30 465654 466786 C 1118 96.96 1395 accept 1 ALIGNMENT 1034 Y12-8l06.q1k chr12 34 1178 453617 454770 F 1145 97.55 1344 accept 0 ALIGNMENT 907 Y12-8l08.p1k chr04 1020 20 286164 287179 C 1001 97.70 1374 accept 0 ALIGNMENT 860 Y12-8l08.q1k chr04 37 1072 281011 282064 F 1036 96.04 1309 accept 0 ALIGNMENT 940 Y12-8l09.p1k chr10 18 1126 271332 272457 F 1109 96.30 1382 accept 0 ALIGNMENT 859 Y12-8l09.q1k chr10 1046 37 276034 277049 C 1010 96.53 1283 accept 0 ALIGNMENT 917 Y12-8l10.q1k chr12 1077 36 762916 763972 C 1042 96.64 1294 accept 0 ALIGNMENT 952 Y12-8l10.p1k chr12 19 1131 759303 760429 F 1113 96.32 1395 accept 0 ALIGNMENT 1001 Y12-8l11.p1k chr14 21 1135 15927 17057 F 1115 97.85 1388 accept 0 ALIGNMENT 0 Y12-8l11.p1k chr10 221 117 728177 728319 C 105 0.00 1388 reject_low 2 ALIGNMENT 456 Y12-8l11.p1k chr10 1077 222 727316 728176 C 856 85.28 1388 reject_low 2 ALIGNMENT 432 Y12-8l11.p1k chr03 1019 311 314199 314907 C 709 87.87 1388 reject_low 4 ALIGNMENT 0 Y12-8l11.p1k chr04 62 232 17596 17595 F 171 0.00 1388 reject_low 1 ALIGNMENT 917 Y12-8l11.q1k chr14 1119 37 20324 21422 C 1083 96.12 1295 accept 0 ALIGNMENT 0 Y12-8l11.p1k chr15 715 865 2120 2119 F 151 0.00 1388 reject_low 5 ALIGNMENT 202 Y12-8l11.p1k chr15 311 714 1717 2120 F 404 84.16 1388 reject_low 5 ALIGNMENT 0 Y12-8l11.p1k chr06 62 232 14324 14323 F 171 0.00 1388 reject_low 3 ALIGNMENT 0 Y12-8l11.p1k chr15 62 310 1717 1716 F 249 0.00 1388 reject_low 5 ALIGNMENT 0 Y12-8l11.p1k chr03 310 62 314908 314907 C 249 0.00 1388 reject_low 4 ALIGNMENT 72 Y12-8l11.p1k chr10 116 21 728320 728416 C 96 93.75 1388 reject_low 2 ALIGNMENT 492 Y12-8l11.p1k chr06 233 1053 14324 15144 F 821 87.45 1388 reject_low 3 ALIGNMENT 552 Y12-8l11.p1k chr04 233 1116 17596 18490 F 884 88.57 1388 reject_low 1 ALIGNMENT 926 Y12-8l12.p1k chr04 1112 24 924230 925334 C 1089 96.42 1371 accept 0 ALIGNMENT 954 Y12-8l12.q1k chr04 37 1168 919249 920399 F 1132 95.76 1335 accept 0 ALIGNMENT 945 Y12-8l13.p1k chr06 20 1166 97862 99010 F 1147 95.47 1443 accept 0 ALIGNMENT 950 Y12-8l13.q1k chr06 1140 28 102104 103235 C 1113 96.14 1298 accept 0 ALIGNMENT 747 Y12-8l14.q1k chrm 1196 37 17966 19126 C 1160 92.33 1326 accept_chi 0 ALIGNMENT 401 Y12-8l14.p1k chr11 1080 414 587192 587854 C 667 88.01 1624 accept_chi 1 ALIGNMENT 517 Y12-8l15.p1k chr07 17 703 6643 7331 F 687 92.58 1425 reject_low 8 ALIGNMENT 518 Y12-8l15.p1k chr11 17 694 2173 2850 F 678 92.92 1425 reject_low 9 ALIGNMENT 25 Y12-8l15.q1k chr02 728 853 190235 190359 F 126 74.60 1331 reject_low 17 ALIGNMENT 0 Y12-8l15.p1k chr12 567 841 14003 14002 F 275 0.00 1425 reject_low 15 ALIGNMENT 919 Y12-8l15.q1k chr09 1131 36 12378 13469 C 1096 95.99 1331 ambiguous_tel 0 ALIGNMENT 0 Y12-8l15.p1k chr07 704 841 7331 7330 F 138 0.00 1425 reject_low 8 ALIGNMENT 419 Y12-8l15.p1k chr01 17 658 2160 2800 F 642 89.41 1425 reject_low 10 ALIGNMENT 218 Y12-8l15.p1k chr13 490 17 922175 922648 C 474 83.54 1425 reject_low 12 ALIGNMENT 0 Y12-8l15.p1k chr09 841 704 433246 433245 C 138 0.00 1425 reject_low 7 ALIGNMENT 30 Y12-8l15.q1k chr02 591 690 190098 190197 F 100 78.00 1331 reject_low 17 ALIGNMENT 939 Y12-8l15.p1k chr09 17 1206 9146 10345 F 1190 94.12 1425 ambiguous_tel 0 ALIGNMENT 30 Y12-8l15.p1k chr04 59 17 1523198 1523241 C 43 95.35 1425 reject_low 16 ALIGNMENT 0 Y12-8l15.p1k chr11 695 841 2850 2849 F 147 0.00 1425 reject_low 9 ALIGNMENT 21 Y12-8l15.p1k chr08 605 629 12887 12912 F 25 96.00 1425 reject_low 18 ALIGNMENT 331 Y12-8l15.p1k chr12 17 506 13436 13929 F 490 90.20 1425 reject_low 15 ALIGNMENT 287 Y12-8l15.p1k chr08 30 497 12297 12763 F 468 88.03 1425 reject_low 18 ALIGNMENT 47 Y12-8l15.q1k chr02 180 330 189681 189831 F 151 78.81 1331 reject_low 17 ALIGNMENT 26 Y12-8l15.q1k chr14 360 398 753370 753408 F 39 89.74 1331 reject_low 4 ALIGNMENT 0 Y12-8l15.p1k chr01 659 841 2800 2799 F 183 0.00 1425 reject_low 10 ALIGNMENT 919 Y12-8l15.q1k chr10 1131 36 12361 13452 C 1096 95.99 1331 ambiguous_tel 1 ALIGNMENT 218 Y12-8l15.p1k chr15 490 17 1082368 1082843 C 474 83.33 1425 reject_low 13 ALIGNMENT 322 Y12-8l15.p1k chr02 17 502 7959 8448 F 486 89.71 1425 reject_low 11 ALIGNMENT 0 Y12-8l15.p1k chr12 507 541 13930 13978 F 35 0.00 1425 reject_low 15 ALIGNMENT 0 Y12-8l15.p1k chr04 841 60 1523199 1523198 C 782 0.00 1425 reject_low 16 ALIGNMENT 939 Y12-8l15.p1k chr10 17 1206 9129 10328 F 1190 94.12 1425 ambiguous_tel 1 ALIGNMENT 20 Y12-8l15.p1k chr12 542 566 13979 14003 F 25 96.00 1425 reject_low 15 ALIGNMENT 0 Y12-8l15.q1k chr14 399 442 753409 753461 F 44 0.00 1331 reject_low 4 ALIGNMENT 0 Y12-8l15.q1k chr03 322 821 301287 301286 F 500 0.00 1331 reject_low 2 ALIGNMENT 20 Y12-8l15.p1k chr08 764 829 13032 13095 F 66 80.30 1425 reject_low 18 ALIGNMENT 0 Y12-8l15.p1k chr16 491 841 8773 8772 F 351 0.00 1425 reject_low 14 ALIGNMENT 0 Y12-8l15.p1k chr13 841 491 922176 922175 C 351 0.00 1425 reject_low 12 ALIGNMENT 616 Y12-8l15.p1k chr12 850 17 1062096 1062925 C 834 92.33 1425 reject_low 5 ALIGNMENT 123 Y12-8l15.q1k chr14 443 1025 753462 754042 F 583 75.30 1331 reject_low 4 ALIGNMENT 531 Y12-8l15.p1k chr09 703 17 433245 433934 C 687 93.30 1425 reject_low 7 ALIGNMENT 0 Y12-8l15.q1k chr02 691 727 190198 190234 F 37 0.00 1331 reject_low 17 ALIGNMENT 159 Y12-8l15.q1k chr03 36 321 301001 301287 F 286 86.36 1331 reject_low 2 ALIGNMENT 0 Y12-8l15.q1k chr14 326 359 753312 753369 F 34 0.00 1331 reject_low 4 ALIGNMENT 0 Y12-8l15.q1k chr02 331 590 189832 190097 F 260 0.00 1331 reject_low 17 ALIGNMENT 0 Y12-8l15.p1k chr02 503 841 8448 8447 F 339 0.00 1425 reject_low 11 ALIGNMENT 0 Y12-8l15.p1k chr15 841 491 1082369 1082368 C 351 0.00 1425 reject_low 13 ALIGNMENT 178 Y12-8l15.q1k chr14 36 325 753022 753311 F 290 88.28 1331 reject_low 4 ALIGNMENT 0 Y12-8l15.q1k chr02 62 179 189681 189680 F 118 0.00 1331 reject_low 17 ALIGNMENT 218 Y12-8l15.p1k chr16 17 490 8298 8773 F 474 83.12 1425 reject_low 14 ALIGNMENT 619 Y12-8l15.p1k chr03 1002 17 306833 307806 C 986 89.55 1425 reject_low 2 ALIGNMENT 430 Y12-8l15.p1k chr15 17 1089 11901 12977 F 1073 81.73 1425 reject_low 6 ALIGNMENT 568 Y12-8l15.p1k chr14 1079 17 780867 781927 C 1063 86.36 1425 reject_low 3 ALIGNMENT 0 Y12-8l15.p1k chr08 498 604 12764 12886 F 107 0.00 1425 reject_low 18 ALIGNMENT 0 Y12-8l15.p1k chr08 630 763 12913 13031 F 134 0.00 1425 reject_low 18 ALIGNMENT 1015 Y12-8l16.q1k chr12 35 1185 763152 764310 F 1151 96.61 1310 accept 0 ALIGNMENT 1047 Y12-8l16.p1k chr12 1248 18 768035 769278 C 1231 96.83 1430 accept 0 ALIGNMENT 998 Y12-8l17.p1k chr02 1183 20 108722 109889 C 1164 96.39 1384 accept 0 ALIGNMENT 942 Y12-8l17.q1k chr02 36 1135 104854 105973 F 1100 96.64 1267 accept 0 ALIGNMENT 969 Y12-8l18.q1k chr15 34 1129 348134 349234 F 1096 97.35 1278 accept 0 ALIGNMENT 983 Y12-8l18.p1k chr15 1197 17 351705 352892 C 1181 95.43 1416 accept 0 ALIGNMENT 989 Y12-8l19.q1k chr15 1207 35 928824 930007 C 1173 95.82 1272 accept 0 ALIGNMENT 1047 Y12-8l19.p1k chr15 20 1201 925434 926617 F 1182 96.95 1382 accept 0 ALIGNMENT 951 Y12-8l20.p1k chr04 14 1163 344879 346043 F 1150 95.39 1353 accept 0 ALIGNMENT 950 Y12-8l20.q1k chr04 1263 35 348924 350160 C 1229 95.04 1266 accept 0 ALIGNMENT 934 Y12-8l21.p1k chr07 22 1105 728134 729232 F 1084 96.59 1296 accept_chi 1 ALIGNMENT 1011 Y12-8l21.q1k chr16 1213 41 905033 906219 C 1173 96.16 1230 accept_chi 0 ALIGNMENT 924 Y12-8l22.q1k chr04 1069 1 460662 461736 C 1069 95.88 1104 accept 0 ALIGNMENT 933 Y12-8l22.p1k chr04 20 1156 457585 458738 F 1137 95.78 1305 accept 0 ALIGNMENT 948 Y12-8l23.q1k chr14 1227 30 515638 516850 C 1198 94.49 1228 accept_chi 0 ALIGNMENT 780 Y12-8l23.p1k chr14 1050 84 505633 506595 C 967 94.73 1398 accept_chi 1 ALIGNMENT 76 Y12-8l24.p1k chr16 230 402 449377 449549 F 173 81.50 1359 reject_low 3 ALIGNMENT 136 Y12-8l24.p1k chr14 557 19 765697 766236 C 539 76.44 1359 reject_low 2 ALIGNMENT 918 Y12-8l24.q1k chr15 31 1098 982350 983405 F 1068 97.00 1262 accept_chi 0 ALIGNMENT 0 Y12-8l24.p1k chr16 62 229 449377 449376 F 168 0.00 1359 reject_low 3 ALIGNMENT 0 Y12-8l24.p1k chr14 788 558 765698 765697 C 231 0.00 1359 reject_low 2 ALIGNMENT 958 Y12-8l24.p1k chr04 1137 17 466059 467166 C 1121 96.43 1359 accept_chi 1 ALIGNMENT 0 Y12-8l24.p1k chr16 403 788 449549 449548 F 386 0.00 1359 reject_low 3 ALIGNMENT 251 Y12-8m01.q1k chr04 34 404 561802 562174 F 371 89.49 1414 accept 0 ALIGNMENT 768 Y12-8m01.p1k chr04 947 5 565075 566015 C 943 95.12 1335 accept 0 ALIGNMENT 783 Y12-8m02.p1k chr06 13 982 255201 256159 F 970 94.85 1435 accept 0 ALIGNMENT 911 Y12-8m05.q1k chr02 1130 36 143155 144249 C 1095 96.16 1369 accept 0 ALIGNMENT 968 Y12-8m05.p1k chr02 16 1068 138286 139353 F 1053 98.20 1394 accept 0 ALIGNMENT 990 Y12-8m06.p1k chr02 1172 22 96398 97559 C 1151 96.26 1401 accept 0 ALIGNMENT 871 Y12-8m06.q1k chr02 31 1034 93237 94249 F 1004 97.21 1276 accept 0 ALIGNMENT 890 Y12-8m07.q1k chr14 1046 37 491541 492566 C 1010 96.53 1292 accept 0 ALIGNMENT 966 Y12-8m07.p1k chr14 21 1091 488235 489319 F 1071 97.48 1404 accept 0 ALIGNMENT 939 Y12-8m08.p1k chr02 1095 17 238464 239549 C 1079 96.57 1388 accept 0 ALIGNMENT 874 Y12-8m08.q1k chr02 32 1017 234314 235307 F 986 97.46 1262 accept 0 ALIGNMENT 686 Y12-8m09.p1k chr16 25 1000 75540 76503 F 976 92.42 1398 accept 0 ALIGNMENT 0 Y12-8m09.p1k chr13 656 494 651621 651620 C 163 0.00 1398 reject_low 1 ALIGNMENT 203 Y12-8m09.p1k chr13 493 204 651620 651909 C 290 90.34 1398 reject_low 1 ALIGNMENT 157 Y12-8m09.q1k chr16 314 1 79154 79466 C 314 85.35 473 accept 0 ALIGNMENT 178 Y12-8m10.p1k chr08 21 219 543743 543941 F 199 98.99 1442 reject_low 16 ALIGNMENT 0 Y12-8m10.p1k chr07 882 228 401955 401954 C 655 0.00 1442 reject_low 1 ALIGNMENT 0 Y12-8m10.p1k chr07 882 220 535216 535215 C 663 0.00 1442 reject_low 7 ALIGNMENT 67 Y12-8m10.p1k chr03 62 219 168771 168928 F 158 83.54 1442 reject_low 23 ALIGNMENT 909 Y12-8m10.q1k chr14 36 1214 436864 438046 F 1179 93.98 1364 accept 0 ALIGNMENT 0 Y12-8m10.p1k chr08 220 882 543941 543940 F 663 0.00 1442 reject_low 16 ALIGNMENT 0 Y12-8m10.p1k chr13 220 882 362917 362916 F 663 0.00 1442 reject_low 12 ALIGNMENT 178 Y12-8m10.p1k chr13 219 21 184170 184368 C 199 98.99 1442 reject_low 18 ALIGNMENT 176 Y12-8m10.p1k chr03 219 21 151518 151715 C 199 98.99 1442 reject_low 20 ALIGNMENT 175 Y12-8m10.p1k chr04 223 21 1175304 1175506 C 203 98.03 1442 reject_low 4 ALIGNMENT 181 Y12-8m10.p1k chr13 21 219 362719 362917 F 199 99.50 1442 reject_low 12 ALIGNMENT 29 Y12-8m10.p1k chr14 219 190 102549 102578 C 30 100.00 1442 reject_low 26 ALIGNMENT 0 Y12-8m10.p1k chr03 220 882 124462 124461 F 663 0.00 1442 reject_low 21 ALIGNMENT 181 Y12-8m10.p1k chr07 21 219 823113 823311 F 199 99.50 1442 reject_low 9 ALIGNMENT 181 Y12-8m10.p1k chr15 219 21 600403 600601 C 199 99.50 1442 reject_low 14 ALIGNMENT 180 Y12-8m10.p1k chr14 21 221 102325 102525 F 201 99.00 1442 reject_low 3 ALIGNMENT 178 Y12-8m10.p1k chr08 21 219 549439 549637 F 199 98.99 1442 reject_low 17 ALIGNMENT 181 Y12-8m10.p1k chr11 21 219 457916 458114 F 199 99.50 1442 reject_low 10 ALIGNMENT 0 Y12-8m10.p1k chr15 882 220 594822 594821 C 663 0.00 1442 reject_low 13 ALIGNMENT 173 Y12-8m10.p1k chr03 22 219 124265 124462 F 198 98.48 1442 reject_low 21 ALIGNMENT 0 Y12-8m10.p1k chr11 221 882 517427 517426 F 662 0.00 1442 reject_low 2 ALIGNMENT 181 Y12-8m10.p1k chr02 219 21 265161 265359 C 199 99.50 1442 reject_low 6 ALIGNMENT 40 Y12-8m10.p1k chr03 168 52 149531 149646 C 117 82.05 1442 reject_low 25 ALIGNMENT 0 Y12-8m10.p1k chr08 220 882 549637 549636 F 663 0.00 1442 reject_low 17 ALIGNMENT 182 Y12-8m10.p1k chr11 21 220 517228 517427 F 200 99.50 1442 reject_low 2 ALIGNMENT 0 Y12-8m10.p1k chr14 189 62 102579 102578 C 128 0.00 1442 reject_low 26 ALIGNMENT 181 Y12-8m10.p1k chr07 219 21 535215 535413 C 199 99.50 1442 reject_low 7 ALIGNMENT 0 Y12-8m10.p1k chr03 220 882 168928 168927 F 663 0.00 1442 reject_low 23 ALIGNMENT 42 Y12-8m10.p1k chr15 101 21 594630 594710 C 81 87.65 1442 reject_low 24 ALIGNMENT 0 Y12-8m10.p1k chr14 222 882 102525 102524 F 661 0.00 1442 reject_low 3 ALIGNMENT 795 Y12-8m10.p1k chr14 1211 220 441737 442749 C 992 94.56 1442 accept 0 ALIGNMENT 0 Y12-8m10.p1k chr02 882 220 221041 221040 C 663 0.00 1442 reject_low 5 ALIGNMENT 178 Y12-8m10.p1k chr02 219 21 259576 259774 C 199 98.99 1442 reject_low 15 ALIGNMENT 0 Y12-8m10.p1k chr03 882 169 149532 149531 C 714 0.00 1442 reject_low 25 ALIGNMENT 0 Y12-8m10.p1k chr04 882 224 1175305 1175304 C 659 0.00 1442 reject_low 4 ALIGNMENT 181 Y12-8m10.p1k chr02 219 21 221040 221238 C 199 99.50 1442 reject_low 5 ALIGNMENT 0 Y12-8m10.p1k chr14 219 62 442750 442749 C 158 0.00 1442 accept 0 ALIGNMENT 0 Y12-8m10.p1k chr13 220 882 357335 357334 F 663 0.00 1442 reject_low 11 ALIGNMENT 0 Y12-8m10.p1k chr14 882 220 102550 102549 C 663 0.00 1442 reject_low 26 ALIGNMENT 0 Y12-8m10.p1k chr07 220 882 817729 817728 F 663 0.00 1442 reject_low 8 ALIGNMENT 181 Y12-8m10.p1k chr13 21 219 357137 357335 F 199 99.50 1442 reject_low 11 ALIGNMENT 181 Y12-8m10.p1k chr15 219 21 594821 595019 C 199 99.50 1442 reject_low 13 ALIGNMENT 0 Y12-8m10.p1k chr02 882 220 259577 259576 C 663 0.00 1442 reject_low 15 ALIGNMENT 0 Y12-8m10.p1k chr14 220 882 96941 96940 F 663 0.00 1442 reject_low 19 ALIGNMENT 0 Y12-8m10.p1k chr11 220 882 458114 458113 F 663 0.00 1442 reject_low 10 ALIGNMENT 0 Y12-8m10.p1k chr15 882 102 594631 594630 C 781 0.00 1442 reject_low 24 ALIGNMENT 181 Y12-8m10.p1k chr07 21 219 817531 817729 F 199 99.50 1442 reject_low 8 ALIGNMENT 176 Y12-8m10.p1k chr07 227 21 401954 402160 C 207 97.58 1442 reject_low 1 ALIGNMENT 0 Y12-8m10.p1k chr13 882 220 184171 184170 C 663 0.00 1442 reject_low 18 ALIGNMENT 178 Y12-8m10.p1k chr14 21 219 96743 96941 F 199 98.99 1442 reject_low 19 ALIGNMENT 0 Y12-8m10.p1k chr02 882 220 265162 265161 C 663 0.00 1442 reject_low 6 ALIGNMENT 163 Y12-8m10.p1k chr03 21 219 142879 143077 F 199 96.48 1442 reject_low 22 ALIGNMENT 0 Y12-8m10.p1k chr03 882 220 151519 151518 C 663 0.00 1442 reject_low 20 ALIGNMENT 0 Y12-8m10.p1k chr03 220 882 143077 143076 F 663 0.00 1442 reject_low 22 ALIGNMENT 0 Y12-8m10.p1k chr15 882 220 600404 600403 C 663 0.00 1442 reject_low 14 ALIGNMENT 0 Y12-8m10.p1k chr07 220 882 823311 823310 F 663 0.00 1442 reject_low 9 ALIGNMENT 934 Y12-8m12.q1k chr16 1145 29 509787 510911 C 1117 96.15 1345 accept 0 ALIGNMENT 920 Y12-8m12.p1k chr16 28 1112 506317 507420 F 1085 96.04 1383 accept 0 ALIGNMENT 1003 Y12-8m13.q1k chr14 36 1147 548372 549497 F 1112 97.84 1321 accept 0 ALIGNMENT 920 Y12-8m13.p1k chr14 1017 24 552629 553631 C 994 98.89 1351 accept 0 ALIGNMENT 973 Y12-8m14.q1k chr12 1225 29 1027964 1029161 C 1197 95.24 1341 accept_chi 0 ALIGNMENT 548 Y12-8m14.p1k chr12 830 7 529759 530585 C 824 89.81 1211 accept_chi 1 ALIGNMENT 959 Y12-8m15.p1k chr15 19 1117 403017 404128 F 1099 97.00 1365 accept 0 ALIGNMENT 931 Y12-8m15.q1k chr15 1107 36 404844 405933 C 1072 96.92 1319 accept 0 ALIGNMENT 867 Y12-8m17.q1k chr04 1065 66 146122 147123 C 1000 95.80 1302 accept 0 ALIGNMENT 991 Y12-8m17.p1k chr04 19 1205 142748 143944 F 1187 95.70 1391 accept 0 ALIGNMENT 890 Y12-8m18.q1k chr06 1080 38 148829 149890 C 1043 97.32 1232 accept 0 ALIGNMENT 1035 Y12-8m18.p1k chr06 21 1200 144799 145987 F 1180 97.46 1372 accept 0 ALIGNMENT 871 Y12-8m19.q1k chr14 1046 54 318604 319607 C 993 97.18 1247 accept 0 ALIGNMENT 872 Y12-8m20.q1k chr07 1144 31 303668 304789 C 1114 93.99 1297 accept 0 ALIGNMENT 999 Y12-8m20.p1k chr07 18 1160 300082 301233 F 1143 96.94 1353 accept 0 ALIGNMENT 725 Y12-8m21.p1k chr12 103 1058 284590 285559 F 956 93.10 1368 accept 0 ALIGNMENT 22 Y12-8m22.q1k chr12 242 213 585049 585078 C 30 93.33 1241 reject_low 5 ALIGNMENT 0 Y12-8m22.p1k chr04 792 62 588393 588392 C 731 0.00 1332 reject_low 1 ALIGNMENT 0 Y12-8m22.q1k chr07 62 212 530669 530668 F 151 0.00 1241 reject_low 7 ALIGNMENT 28 Y12-8m22.q1k chr11 242 213 576128 576157 C 30 100.00 1241 reject_low 2 ALIGNMENT 27 Y12-8m22.q1k chr15 241 213 427958 427986 C 29 100.00 1241 reject_low 3 ALIGNMENT 0 Y12-8m22.q1k chr11 212 62 576158 576157 C 151 0.00 1241 reject_low 2 ALIGNMENT 0 Y12-8m22.q1k chr12 802 243 585050 585049 C 560 0.00 1241 reject_low 5 ALIGNMENT 854 Y12-8m22.q1k chr04 36 1079 584436 585469 F 1044 95.40 1241 accept 0 ALIGNMENT 24 Y12-8m22.q1k chr08 241 213 365398 365426 C 29 96.55 1241 reject_low 4 ALIGNMENT 0 Y12-8m22.q1k chr08 802 242 365399 365398 C 561 0.00 1241 reject_low 4 ALIGNMENT 0 Y12-8m22.q1k chr15 215 62 428044 428043 C 154 0.00 1241 reject_low 8 ALIGNMENT 912 Y12-8m22.p1k chr04 1092 21 588090 589167 C 1072 95.80 1332 accept 0 ALIGNMENT 0 Y12-8m22.q1k chr08 212 62 365427 365426 C 151 0.00 1241 reject_low 4 ALIGNMENT 0 Y12-8m22.q1k chr15 802 242 427959 427958 C 561 0.00 1241 reject_low 3 ALIGNMENT 21 Y12-8m22.q1k chr15 241 216 428018 428043 C 26 96.15 1241 reject_low 8 ALIGNMENT 218 Y12-8m22.p1k chr04 1229 793 587940 588392 C 437 85.13 1332 reject_low 1 ALIGNMENT 0 Y12-8m22.q1k chr09 239 802 376638 376637 F 564 0.00 1241 reject_low 6 ALIGNMENT 0 Y12-8m22.q1k chr09 62 212 376613 376612 F 151 0.00 1241 reject_low 6 ALIGNMENT 21 Y12-8m22.q1k chr07 213 241 530669 530697 F 29 93.10 1241 reject_low 7 ALIGNMENT 0 Y12-8m22.q1k chr15 802 242 428019 428018 C 561 0.00 1241 reject_low 8 ALIGNMENT 0 Y12-8m22.q1k chr15 212 62 427987 427986 C 151 0.00 1241 reject_low 3 ALIGNMENT 0 Y12-8m22.q1k chr11 802 243 576129 576128 C 560 0.00 1241 reject_low 2 ALIGNMENT 0 Y12-8m22.q1k chr07 242 802 530697 530696 F 561 0.00 1241 reject_low 7 ALIGNMENT 23 Y12-8m22.q1k chr09 213 238 376613 376638 F 26 100.00 1241 reject_low 6 ALIGNMENT 0 Y12-8m22.q1k chr12 212 62 585079 585078 C 151 0.00 1241 reject_low 5 ALIGNMENT 1038 Y12-8m24.p1k chr13 1290 17 530598 531877 C 1274 95.05 1303 accept 0 ALIGNMENT 975 Y12-8m24.q1k chr13 42 1222 528002 529184 F 1181 95.77 1224 accept 0 ALIGNMENT 988 Y12-8n01.p1k chr12 1145 1 891860 893007 C 1145 96.33 1333 accept 0 ALIGNMENT 483 Y12-8n02.p1k chr13 815 19 664642 665433 C 797 88.08 1468 accept 0 ALIGNMENT 1018 Y12-8n04.q1k chr14 41 1225 64740 65919 F 1185 96.29 1382 accept 0 ALIGNMENT 1029 Y12-8n04.p1k chr14 1166 19 68200 69353 C 1148 97.39 1390 accept 0 ALIGNMENT 953 Y12-8n05.p1k chr12 1121 17 465872 466998 C 1105 95.84 1371 accept 1 ALIGNMENT 1030 Y12-8n05.q1k chr12 34 1144 460990 462106 F 1111 97.84 1337 accept 1 ALIGNMENT 1030 Y12-8n05.q1k chr12 34 1144 451853 452969 F 1111 97.84 1337 accept 0 ALIGNMENT 696 Y12-8n05.q1k chr12 34 756 489821 490543 F 723 98.89 1337 reject_low 2 ALIGNMENT 0 Y12-8n05.q1k chr12 757 839 490543 490542 F 83 0.00 1337 reject_low 2 ALIGNMENT 953 Y12-8n05.p1k chr12 1121 17 456735 457861 C 1105 95.84 1371 accept 0 ALIGNMENT 110 Y12-8n06.p1k chr07 636 518 700945 701062 C 119 98.32 1398 reject_low 6 ALIGNMENT 1015 Y12-8n06.q1k chr04 1247 38 361919 363130 C 1210 96.03 1384 accept 0 ALIGNMENT 118 Y12-8n06.p1k chr11 514 636 578593 578716 F 123 99.19 1398 reject_low 2 ALIGNMENT 0 Y12-8n06.p1k chr15 636 860 438751 438750 F 225 0.00 1398 reject_low 5 ALIGNMENT 996 Y12-8n06.p1k chr04 24 1190 359073 360249 F 1167 96.40 1398 accept 0 ALIGNMENT 0 Y12-8n06.p1k chr11 637 860 578716 578715 F 224 0.00 1398 reject_low 2 ALIGNMENT 0 Y12-8n06.p1k chr12 640 860 875487 875486 F 221 0.00 1398 reject_low 4 ALIGNMENT 118 Y12-8n06.p1k chr15 514 635 438630 438751 F 122 99.18 1398 reject_low 5 ALIGNMENT 0 Y12-8n06.p1k chr07 860 637 700946 700945 C 224 0.00 1398 reject_low 6 ALIGNMENT 117 Y12-8n06.p1k chr12 517 639 875364 875487 F 123 99.19 1398 reject_low 4 ALIGNMENT 0 Y12-8n06.p1k chr16 513 62 769315 769314 C 452 0.00 1398 reject_low 3 ALIGNMENT 0 Y12-8n06.p1k chr12 62 516 875364 875363 F 455 0.00 1398 reject_low 4 ALIGNMENT 0 Y12-8n06.p1k chr11 62 513 578593 578592 F 452 0.00 1398 reject_low 2 ALIGNMENT 0 Y12-8n06.p1k chr16 860 637 769192 769191 C 224 0.00 1398 reject_low 3 ALIGNMENT 0 Y12-8n06.p1k chr07 517 62 701063 701062 C 456 0.00 1398 reject_low 6 ALIGNMENT 0 Y12-8n06.p1k chr07 62 514 115479 115478 F 453 0.00 1398 reject_low 1 ALIGNMENT 0 Y12-8n06.p1k chr15 62 513 438630 438629 F 452 0.00 1398 reject_low 5 ALIGNMENT 118 Y12-8n06.p1k chr16 636 514 769191 769314 C 123 99.19 1398 reject_low 3 ALIGNMENT 0 Y12-8n06.p1k chr07 643 860 115605 115604 F 218 0.00 1398 reject_low 1 ALIGNMENT 118 Y12-8n06.p1k chr07 515 642 115479 115605 F 128 98.44 1398 reject_low 1 ALIGNMENT 869 Y12-8n08.q1k chr02 1077 40 342502 343546 C 1038 96.34 1304 accept 0 ALIGNMENT 1027 Y12-8n08.p1k chr02 20 1233 338227 339452 F 1214 95.55 1447 accept 0 ALIGNMENT 0 Y12-8n08.q1k chr04 810 446 508186 508185 C 365 0.00 1304 reject_low 1 ALIGNMENT 171 Y12-8n08.q1k chr04 445 40 508185 508590 C 406 81.28 1304 reject_low 1 ALIGNMENT 0 Y12-8n09.q1k chr15 886 737 354040 354039 C 150 0.00 1318 reject_low 10 ALIGNMENT 76 Y12-8n09.q1k chr14 663 745 104805 104887 F 83 97.59 1318 reject_low 3 ALIGNMENT 0 Y12-8n09.q1k chr04 662 62 434334 434333 C 601 0.00 1318 reject_low 4 ALIGNMENT 0 Y12-8n09.q1k chr03 62 662 295480 295479 F 601 0.00 1318 reject_low 8 ALIGNMENT 0 Y12-8n09.q1k chr09 748 886 325828 325827 F 139 0.00 1318 reject_low 1 ALIGNMENT 0 Y12-8n09.q1k chr14 746 886 104887 104886 F 141 0.00 1318 reject_low 3 ALIGNMENT 75 Y12-8n09.q1k chr10 737 663 59098 59172 C 75 100.00 1318 reject_low 6 ALIGNMENT 0 Y12-8n09.q1k chr14 62 662 104805 104804 F 601 0.00 1318 reject_low 3 ALIGNMENT 0 Y12-8n09.q1k chr08 662 62 116175 116174 C 601 0.00 1318 reject_low 9 ALIGNMENT 0 Y12-8n09.q1k chr10 662 62 59173 59172 C 601 0.00 1318 reject_low 6 ALIGNMENT 74 Y12-8n09.q1k chr08 736 663 116101 116174 C 74 100.00 1318 reject_low 9 ALIGNMENT 74 Y12-8n09.q1k chr02 663 736 266378 266451 F 74 100.00 1318 reject_low 7 ALIGNMENT 864 Y12-8n09.p1k chr14 32 1066 556402 557448 F 1035 95.94 1346 accept 0 ALIGNMENT 0 Y12-8n09.q1k chr09 745 886 175108 175107 F 142 0.00 1318 reject_low 2 ALIGNMENT 0 Y12-8n09.q1k chr09 62 649 325732 325731 F 588 0.00 1318 reject_low 1 ALIGNMENT 79 Y12-8n09.q1k chr09 650 747 325732 325828 F 98 94.90 1318 reject_low 1 ALIGNMENT 74 Y12-8n09.q1k chr15 736 663 354039 354112 C 74 100.00 1318 reject_low 10 ALIGNMENT 0 Y12-8n09.q1k chr15 662 62 354113 354112 C 601 0.00 1318 reject_low 10 ALIGNMENT 0 Y12-8n09.q1k chr03 737 886 295553 295552 F 150 0.00 1318 reject_low 8 ALIGNMENT 0 Y12-8n09.q1k chr09 62 658 175024 175023 F 597 0.00 1318 reject_low 2 ALIGNMENT 0 Y12-8n09.q1k chr10 886 738 59099 59098 C 149 0.00 1318 reject_low 6 ALIGNMENT 0 Y12-8n09.q1k chr15 62 662 113801 113800 F 601 0.00 1318 reject_low 5 ALIGNMENT 0 Y12-8n09.q1k chr08 886 737 116102 116101 C 150 0.00 1318 reject_low 9 ALIGNMENT 75 Y12-8n09.q1k chr09 659 744 175024 175108 F 86 96.51 1318 reject_low 2 ALIGNMENT 0 Y12-8n09.q1k chr02 737 886 266451 266450 F 150 0.00 1318 reject_low 7 ALIGNMENT 0 Y12-8n09.q1k chr04 886 743 434255 434254 C 144 0.00 1318 reject_low 4 ALIGNMENT 74 Y12-8n09.q1k chr03 663 736 295480 295553 F 74 100.00 1318 reject_low 8 ALIGNMENT 0 Y12-8n09.q1k chr15 745 886 113882 113881 F 142 0.00 1318 reject_low 5 ALIGNMENT 915 Y12-8n09.q1k chr14 1105 36 560313 561394 C 1070 97.20 1318 accept 0 ALIGNMENT 75 Y12-8n09.q1k chr15 663 744 113801 113882 F 82 97.56 1318 reject_low 5 ALIGNMENT 77 Y12-8n09.q1k chr04 742 663 434254 434333 C 80 98.75 1318 reject_low 4 ALIGNMENT 0 Y12-8n09.q1k chr02 62 662 266378 266377 F 601 0.00 1318 reject_low 7 ALIGNMENT 932 Y12-8n10.p1k chr16 1178 29 577201 578370 C 1150 94.43 1404 accept 0 ALIGNMENT 918 Y12-8n10.q1k chr16 33 1183 573037 574196 F 1151 94.01 1323 accept 0 ALIGNMENT 976 Y12-8n11.p1k chr04 1168 18 29514 30674 C 1151 95.31 1401 accept 0 ALIGNMENT 836 Y12-8n11.q1k chr04 36 1007 26600 27576 F 972 97.74 1263 accept 0 ALIGNMENT 896 Y12-8n14.p1k chr11 1032 18 587071 588100 C 1015 97.44 1311 accept 0 ALIGNMENT 945 Y12-8n14.q1k chr11 41 1156 583114 584248 F 1116 96.06 1305 accept 0 ALIGNMENT 470 Y12-8n15.p1k vc_3 662 1 1085 1749 C 662 90.03 793 reject_vc 4 ALIGNMENT 470 Y12-8n15.p1k vc_1 662 1 1085 1749 C 662 90.03 793 reject_vc 2 ALIGNMENT 470 Y12-8n15.p1k vc_6 1 637 3712 4349 F 637 90.74 793 reject_vc 5 ALIGNMENT 464 Y12-8n15.p1k vc_7 1 662 13918 14582 F 662 89.58 793 reject_vc 7 ALIGNMENT 470 Y12-8n15.p1k vc_2 662 1 1085 1749 C 662 90.03 793 reject_vc 3 ALIGNMENT 473 Y12-8n15.p1k vc_5 662 1 4005 4669 C 662 90.18 793 reject_vc 1 ALIGNMENT 464 Y12-8n15.p1k vc_7 1 662 456 1120 F 662 89.58 793 reject_vc 6 ALIGNMENT 233 Y12-8n15.q1k chr11 274 30 121702 121948 C 245 99.18 275 accept 0 ALIGNMENT 814 Y12-8n16.p1k chr11 1097 27 587029 588084 C 1071 94.12 1425 accept 0 ALIGNMENT 947 Y12-8n18.q1k chr05 1216 36 239208 240377 C 1181 95.09 1324 accept 0 ALIGNMENT 769 Y12-8n18.p1k chr05 241 1193 234101 235069 F 953 94.54 1360 accept 0 ALIGNMENT 902 Y12-8n19.p1k chr08 1152 26 472779 473918 C 1127 95.47 1304 accept 0 ALIGNMENT 973 Y12-8n20.p1k chr12 1189 18 831598 832780 C 1172 94.97 1342 accept 0 ALIGNMENT 980 Y12-8n20.q1k chr12 31 1177 827415 828564 F 1147 95.82 1265 accept 0 ALIGNMENT 990 Y12-8n22.p1k chr07 20 1200 226851 228048 F 1181 95.34 1340 accept 0 ALIGNMENT 957 Y12-8n22.q1k chr07 1182 36 229852 231013 C 1147 95.99 1223 accept 0 ALIGNMENT 0 Y12-8n22.p1k chr14 943 62 500239 500238 C 882 0.00 1340 reject_low 1 ALIGNMENT 101 Y12-8n22.p1k chr14 1200 944 499968 500238 C 257 81.71 1340 reject_low 1 ALIGNMENT 396 Y12-8n23.q1k chr15 141 1163 596060 597089 F 1023 80.65 1245 ambiguous_trans 9 ALIGNMENT 406 Y12-8n23.q1k chr12 141 1113 594388 595362 F 973 81.50 1245 ambiguous_trans 12 ALIGNMENT 408 Y12-8n23.q1k chr16 1163 141 854276 855305 C 1023 81.04 1245 ambiguous_trans 3 ALIGNMENT 396 Y12-8n23.q1k chr08 1163 141 547255 548284 C 1023 80.65 1245 ambiguous_trans 6 ALIGNMENT 394 Y12-8n23.q1k chr04 141 1113 1097007 1097981 F 973 81.09 1245 ambiguous_trans 14 ALIGNMENT 296 Y12-8n23.q1k chr13 1163 485 376347 377034 C 679 82.47 1245 ambiguous_trans 25 ALIGNMENT 356 Y12-8n23.q1k chr16 1027 141 808434 809317 C 887 80.95 1245 ambiguous_trans 17 ALIGNMENT 296 Y12-8n23.q1k chr05 1163 485 496142 496829 C 679 82.47 1245 ambiguous_trans 24 ALIGNMENT 396 Y12-8n23.q1k chr13 141 1163 185409 186438 F 1023 80.65 1245 ambiguous_trans 8 ALIGNMENT 333 Y12-8n23.q1k chr10 141 970 479206 480032 F 830 80.84 1245 ambiguous_trans 19 ALIGNMENT 408 Y12-8n23.q1k chr05 1163 141 447043 448072 C 1023 81.04 1245 ambiguous_trans 0 ALIGNMENT 325 Y12-8n23.q1k chr13 1113 141 360704 361678 C 973 79.14 1245 ambiguous_trans 20 ALIGNMENT 396 Y12-8n23.q1k chr16 141 1163 845653 846682 F 1023 80.65 1245 ambiguous_trans 10 ALIGNMENT 396 Y12-8n23.q1k chr02 141 1163 260815 261844 F 1023 80.65 1245 ambiguous_trans 5 ALIGNMENT 367 Y12-8n23.q1k chr07 1038 141 821178 822072 C 898 81.18 1245 ambiguous_trans 16 ALIGNMENT 406 Y12-8n23.q1k chr04 141 1113 1207935 1208909 F 973 81.50 1245 ambiguous_trans 11 ALIGNMENT 318 Y12-8n23.q1k chr04 141 1163 804138 805167 F 1023 78.20 1245 ambiguous_trans_ua 18 ALIGNMENT 328 Y12-8n23.q1k chr12 1163 368 479625 480428 C 796 81.66 1245 ambiguous_trans 21 ALIGNMENT 377 Y12-8n23.q1k chr07 1039 141 565628 566523 C 899 81.54 1245 ambiguous_trans 15 ALIGNMENT 408 Y12-8n23.q1k chr07 141 1163 537009 538038 F 1023 81.04 1245 ambiguous_trans 1 ALIGNMENT 309 Y12-8n23.q1k chr14 1163 385 100255 101041 C 779 81.13 1245 ambiguous_trans 23 ALIGNMENT 408 Y12-8n23.q1k chr10 141 1163 473622 474651 F 1023 81.04 1245 ambiguous_trans 2 ALIGNMENT 318 Y12-8n23.q1k chr02 385 1163 222524 223310 F 779 81.51 1245 ambiguous_trans 22 ALIGNMENT 396 Y12-8n23.q1k chr12 1163 141 218732 219761 C 1023 80.65 1245 ambiguous_trans_ua 7 ALIGNMENT 405 Y12-8n23.q1k chr13 141 1163 197576 198605 F 1023 80.94 1245 ambiguous_trans 4 ALIGNMENT 406 Y12-8n23.q1k chr15 141 1113 118947 119921 F 973 81.50 1245 ambiguous_trans 13 ALIGNMENT 27 Y12-8n24.q1k chr15 1112 981 954009 954128 C 132 79.55 1252 reject_bad_break 0 ALIGNMENT 984 Y12-8n24.p1k chr15 19 1212 951087 952282 F 1194 95.90 1313 reject_bad_break 0 ALIGNMENT 836 Y12-8n24.q1k chr15 951 36 954158 955071 C 916 98.25 1252 reject_bad_break 0 ALIGNMENT 0 Y12-8n24.q1k chr15 980 952 954129 954157 C 29 0.00 1252 reject_bad_break 0 ALIGNMENT 0 Y12-8o01.q1k chr10 714 734 382079 382078 F 21 0.00 1402 reject_low 6 ALIGNMENT 63 Y12-8o01.q1k chr05 33 712 364600 365279 F 680 71.18 1402 reject_low 4 ALIGNMENT 220 Y12-8o01.q1k chr12 882 31 96624 97471 C 852 76.64 1402 reject_low 2 ALIGNMENT 58 Y12-8o01.q1k chr10 725 441 520737 521012 C 285 75.44 1402 reject_low 5 ALIGNMENT 861 Y12-8o01.q1k chr14 30 1123 252087 253163 F 1094 94.15 1402 reject_low 1 ALIGNMENT 0 Y12-8o01.q1k chr05 713 734 365279 365278 F 22 0.00 1402 reject_low 4 ALIGNMENT 0 Y12-8o01.q1k chr10 69 85 381438 381457 F 17 0.00 1402 reject_low 6 ALIGNMENT 921 Y12-8o01.q1k chr04 30 1123 44093 45169 F 1094 95.98 1402 accept 0 ALIGNMENT 0 Y12-8o01.q1k chr10 440 62 521013 521012 C 379 0.00 1402 reject_low 5 ALIGNMENT 88 Y12-8o01.q1k chr10 86 713 381458 382079 F 628 72.61 1402 reject_low 6 ALIGNMENT 996 Y12-8o01.p1k chr04 1184 17 49042 50223 C 1168 96.58 1369 accept 0 ALIGNMENT 20 Y12-8o01.q1k chr10 30 68 381399 381437 F 39 84.62 1402 reject_low 6 ALIGNMENT 179 Y12-8o01.q1k chr01 820 31 140634 141420 C 790 75.70 1402 reject_low 3 ALIGNMENT 738 Y12-8o02.q1k chr07 1 971 713951 714918 F 971 93.00 1236 accept 0 ALIGNMENT 901 Y12-8o02.p1k chr07 1164 3 716723 717879 C 1162 93.98 1350 accept 0 ALIGNMENT 211 Y12-8o03.p1k chr04 602 154 49644 50089 C 449 83.96 1494 accept 0 ALIGNMENT 943 Y12-8o04.p1k chr06 15 1065 21380 22441 F 1051 97.34 1365 accept 0 ALIGNMENT 853 Y12-8o04.q1k chr06 1173 12 25314 26493 C 1162 93.72 1294 accept 0 ALIGNMENT 695 Y12-8o05.p1k chr02 1089 147 593555 594496 C 943 92.79 1441 accept 0 ALIGNMENT 933 Y12-8o06.p1k chr07 22 1072 456480 457540 F 1051 97.43 1330 accept 0 ALIGNMENT 1038 Y12-8o06.q1k chr07 1253 35 460112 461347 C 1219 96.06 1350 accept 0 ALIGNMENT 0 Y12-8o07.p1k chr04 863 75 1206985 1206984 C 789 0.00 1349 reject_low 14 ALIGNMENT 33 Y12-8o07.p1k chr04 74 31 1206984 1207027 C 44 95.45 1349 reject_low 14 ALIGNMENT 0 Y12-8o07.p1k chr06 863 75 143895 143894 C 789 0.00 1349 reject_low 24 ALIGNMENT 34 Y12-8o07.p1k chr08 72 31 133961 134002 C 42 97.62 1349 reject_low 13 ALIGNMENT 31 Y12-8o07.p1k chr13 74 23 504633 504684 C 52 90.38 1349 reject_low 9 ALIGNMENT 0 Y12-8o07.p1k chr04 863 75 1151318 1151317 C 789 0.00 1349 reject_low 8 ALIGNMENT 22 Y12-8o07.p1k chr16 74 51 844702 844725 C 24 100.00 1349 reject_low 29 ALIGNMENT 791 Y12-8o07.q1k chr04 1126 36 1154610 1155709 C 1091 92.21 1321 accept 0 ALIGNMENT 0 Y12-8o07.p1k chr05 75 863 443436 443435 F 789 0.00 1349 reject_low 23 ALIGNMENT 33 Y12-8o07.p1k chr16 31 74 810225 810268 F 44 95.45 1349 reject_low 17 ALIGNMENT 0 Y12-8o07.p1k chr07 863 75 774125 774124 C 789 0.00 1349 reject_low 10 ALIGNMENT 0 Y12-8o07.p1k chr07 863 75 402251 402250 C 789 0.00 1349 reject_low 11 ALIGNMENT 31 Y12-8o07.p1k chr05 38 72 431493 431527 F 35 100.00 1349 reject_low 21 ALIGNMENT 21 Y12-8o07.p1k chr16 74 52 804612 804634 C 23 100.00 1349 reject_low 33 ALIGNMENT 29 Y12-8o07.p1k chr09 74 30 325118 325163 C 45 93.33 1349 reject_low 20 ALIGNMENT 0 Y12-8o07.p1k chr13 863 75 504634 504633 C 789 0.00 1349 reject_low 9 ALIGNMENT 605 Y12-8o07.q1k chr08 1029 47 287589 288574 C 983 88.50 1321 reject_low 2 ALIGNMENT 910 Y12-8o07.p1k chr04 52 1107 1151365 1152435 F 1056 97.16 1349 accept 0 ALIGNMENT 440 Y12-8o07.q1k chr04 918 41 1163568 1164445 C 878 84.51 1321 reject_low 3 ALIGNMENT 31 Y12-8o07.p1k chr05 72 28 62433 62477 C 45 93.33 1349 reject_low 12 ALIGNMENT 791 Y12-8o07.q1k chr04 1126 36 1160002 1161101 C 1091 92.21 1321 reject_low 1 ALIGNMENT 0 Y12-8o07.p1k chr07 80 62 328121 328120 C 19 0.00 1349 reject_low 7 ALIGNMENT 0 Y12-8o07.p1k chr08 863 73 133962 133961 C 791 0.00 1349 reject_low 13 ALIGNMENT 0 Y12-8o07.p1k chr16 75 863 804684 804683 F 789 0.00 1349 reject_low 16 ALIGNMENT 138 Y12-8o07.q1k chr13 36 534 288262 288760 F 499 77.56 1321 reject_low 6 ALIGNMENT 30 Y12-8o07.p1k chr09 72 40 246508 246540 C 33 100.00 1349 reject_low 27 ALIGNMENT 22 Y12-8o07.p1k chr16 74 51 850293 850316 C 24 100.00 1349 reject_low 30 ALIGNMENT 0 Y12-8o07.p1k chr05 75 863 435985 435984 F 789 0.00 1349 reject_low 31 ALIGNMENT 0 Y12-8o07.p1k chr07 863 197 328008 328007 C 667 0.00 1349 reject_low 7 ALIGNMENT 27 Y12-8o07.p1k chr05 30 74 443392 443436 F 45 91.11 1349 reject_low 23 ALIGNMENT 31 Y12-8o07.p1k chr15 72 38 665105 665139 C 35 100.00 1349 reject_low 22 ALIGNMENT 27 Y12-8o07.p1k chr12 74 31 593437 593480 C 44 90.91 1349 reject_low 26 ALIGNMENT 32 Y12-8o07.p1k chr07 74 28 774124 774170 C 47 93.62 1349 reject_low 10 ALIGNMENT 33 Y12-8o07.p1k chr14 74 31 519454 519497 C 44 95.45 1349 reject_low 15 ALIGNMENT 27 Y12-8o07.p1k chr07 74 31 931979 932022 C 44 90.91 1349 reject_low 25 ALIGNMENT 43 Y12-8o07.p1k chr07 196 81 328007 328120 C 116 84.48 1349 reject_low 7 ALIGNMENT 0 Y12-8o07.q1k chr13 535 866 288760 288759 F 332 0.00 1321 reject_low 6 ALIGNMENT 0 Y12-8o07.p1k chr16 863 75 850294 850293 C 789 0.00 1349 reject_low 30 ALIGNMENT 21 Y12-8o07.p1k chr05 41 74 435952 435985 F 34 91.18 1349 reject_low 31 ALIGNMENT 0 Y12-8o07.p1k chr09 863 75 325119 325118 C 789 0.00 1349 reject_low 20 ALIGNMENT 0 Y12-8o07.p1k chr16 75 863 850668 850667 F 789 0.00 1349 reject_low 18 ALIGNMENT 0 Y12-8o07.p1k chr16 863 75 844703 844702 C 789 0.00 1349 reject_low 29 ALIGNMENT 0 Y12-8o07.p1k chr16 80 75 804542 804611 C 6 0.00 1349 reject_low 33 ALIGNMENT 308 Y12-8o07.q1k chr08 921 47 291532 292406 C 875 79.66 1321 reject_low 4 ALIGNMENT 0 Y12-8o07.p1k chr07 863 75 876242 876241 C 789 0.00 1349 reject_low 19 ALIGNMENT 43 Y12-8o07.p1k chr04 74 22 1151317 1151370 C 53 98.11 1349 reject_low 8 ALIGNMENT 0 Y12-8o07.p1k chr12 863 75 593438 593437 C 789 0.00 1349 reject_low 26 ALIGNMENT 0 Y12-8o07.p1k chr16 863 123 804501 804500 C 741 0.00 1349 reject_low 33 ALIGNMENT 0 Y12-8o07.p1k chr09 863 73 246509 246508 C 791 0.00 1349 reject_low 27 ALIGNMENT 0 Y12-8o07.p1k chr16 75 863 810268 810267 F 789 0.00 1349 reject_low 17 ALIGNMENT 33 Y12-8o07.p1k chr16 31 74 804641 804684 F 44 95.45 1349 reject_low 16 ALIGNMENT 30 Y12-8o07.p1k chr07 74 31 876241 876284 C 44 93.18 1349 reject_low 19 ALIGNMENT 0 Y12-8o07.p1k chr05 73 863 431527 431526 F 791 0.00 1349 reject_low 21 ALIGNMENT 0 Y12-8o07.p1k chr11 863 75 163132 163131 C 789 0.00 1349 reject_low 28 ALIGNMENT 0 Y12-8o07.p1k chr05 863 73 62434 62433 C 791 0.00 1349 reject_low 12 ALIGNMENT 20 Y12-8o07.p1k chr06 72 41 143825 143856 C 32 90.62 1349 reject_low 32 ALIGNMENT 0 Y12-8o07.p1k chr14 863 75 519455 519454 C 789 0.00 1349 reject_low 15 ALIGNMENT 33 Y12-8o07.p1k chr16 31 74 850625 850668 F 44 95.45 1349 reject_low 18 ALIGNMENT 0 Y12-8o07.p1k chr07 863 75 931980 931979 C 789 0.00 1349 reject_low 25 ALIGNMENT 0 Y12-8o07.p1k chr06 863 73 143826 143825 C 791 0.00 1349 reject_low 32 ALIGNMENT 0 Y12-8o07.p1k chr15 863 73 665106 665105 C 791 0.00 1349 reject_low 22 ALIGNMENT 28 Y12-8o07.p1k chr16 122 81 804500 804541 C 42 92.86 1349 reject_low 33 ALIGNMENT 36 Y12-8o07.p1k chr07 74 30 402250 402294 C 45 97.78 1349 reject_low 11 ALIGNMENT 163 Y12-8o07.q1k chr10 61 942 27126 28010 F 882 74.72 1321 reject_low 5 ALIGNMENT 28 Y12-8o07.p1k chr11 74 40 163131 163165 C 35 97.14 1349 reject_low 28 ALIGNMENT 31 Y12-8o07.p1k chr06 74 40 143894 143928 C 35 100.00 1349 reject_low 24 ALIGNMENT 979 Y12-8o09.p1k chr13 1201 20 515897 517097 C 1182 95.26 1394 accept 0 ALIGNMENT 997 Y12-8o09.q1k chr13 36 1205 511517 512704 F 1170 96.32 1332 accept 0 ALIGNMENT 0 Y12-8o10.q1k chr04 901 62 209120 209119 C 840 0.00 1304 reject_low 1 ALIGNMENT 23 Y12-8o10.q1k chr04 933 902 209088 209119 C 32 90.62 1304 reject_low 1 ALIGNMENT 984 Y12-8o10.q1k chr15 1153 35 542345 543479 C 1119 96.69 1304 accept 0 ALIGNMENT 976 Y12-8o10.p1k chr15 18 1158 538565 539724 F 1141 95.88 1377 accept 0 ALIGNMENT 933 Y12-8o11.p1k chr13 19 1126 848103 849229 F 1108 95.58 1384 accept 0 ALIGNMENT 1001 Y12-8o11.q1k chr13 1279 36 851034 852283 C 1244 94.53 1349 accept 0 ALIGNMENT 203 Y12-8o12.p1k chr12 1108 694 515909 516332 C 415 83.86 1380 reject_low 1 ALIGNMENT 992 Y12-8o12.p1k chr04 18 1147 1452703 1453849 F 1130 97.17 1380 accept 0 ALIGNMENT 993 Y12-8o12.q1k chr04 1280 39 1456923 1458167 C 1242 94.85 1337 accept 0 ALIGNMENT 0 Y12-8o12.p1k chr12 693 62 516333 516332 C 632 0.00 1380 reject_low 1 ALIGNMENT 1000 Y12-8o13.q1k chr16 1223 36 496883 498071 C 1188 95.54 1340 accept 0 ALIGNMENT 959 Y12-8o13.p1k chr16 20 1101 493861 494955 F 1082 97.13 1356 accept 0 ALIGNMENT 816 Y12-8o14.p1k chr12 1014 21 529677 530674 C 994 94.16 1298 accept 0 ALIGNMENT 1006 Y12-8o14.q1k chr12 32 1236 525310 526530 F 1205 95.68 1311 accept 0 ALIGNMENT 734 Y12-8o15.q1k chr12 35 796 489782 490543 F 762 98.95 1316 reject_low 2 ALIGNMENT 938 Y12-8o15.p1k chr12 1073 23 464737 465804 C 1051 96.76 1364 accept 1 ALIGNMENT 0 Y12-8o15.q1k chr12 797 828 490543 490542 F 32 0.00 1316 reject_low 2 ALIGNMENT 938 Y12-8o15.p1k chr12 1073 23 455600 456667 C 1051 96.76 1364 accept 0 ALIGNMENT 1043 Y12-8o15.q1k chr12 35 1173 451814 452960 F 1139 97.37 1316 accept 0 ALIGNMENT 1043 Y12-8o15.q1k chr12 35 1173 460951 462097 F 1139 97.37 1316 accept 1 ALIGNMENT 55 Y12-8o16.q1k chr12 35 93 490485 490543 F 59 98.31 1314 reject_low 2 ALIGNMENT 1024 Y12-8o16.p1k chr12 1205 20 466360 467571 C 1186 96.29 1366 accept 1 ALIGNMENT 1051 Y12-8o16.q1k chr12 35 1248 461654 462869 F 1214 95.88 1314 accept 1 ALIGNMENT 1024 Y12-8o16.p1k chr12 1205 20 457223 458434 C 1186 96.29 1366 accept 0 ALIGNMENT 1051 Y12-8o16.q1k chr12 35 1248 452517 453732 F 1214 95.88 1314 accept 0 ALIGNMENT 0 Y12-8o16.q1k chr12 94 885 490543 490542 F 792 0.00 1314 reject_low 2 ALIGNMENT 918 Y12-8o17.p1k chr16 1099 17 92682 93775 C 1083 95.84 1403 accept 0 ALIGNMENT 953 Y12-8o17.q1k chr16 40 1192 89362 90520 F 1153 95.49 1312 accept 0 ALIGNMENT 894 Y12-8o18.p1k chr03 22 1194 180840 182028 F 1173 93.69 1370 accept 0 ALIGNMENT 901 Y12-8o18.q1k chr03 1100 35 186394 187466 C 1066 96.06 1269 accept 0 ALIGNMENT 0 Y12-8o19.p1k chr12 717 795 662552 662551 F 79 0.00 1351 reject_low 1 ALIGNMENT 934 Y12-8o19.q1k chr06 35 1133 171012 172122 F 1099 96.45 1261 accept 0 ALIGNMENT 196 Y12-8o19.p1k chr12 331 716 662167 662552 F 386 83.94 1351 reject_low 1 ALIGNMENT 0 Y12-8o19.p1k chr12 62 330 662167 662166 F 269 0.00 1351 reject_low 1 ALIGNMENT 950 Y12-8o19.p1k chr06 1116 31 174140 175234 C 1086 95.95 1351 accept 0 ALIGNMENT 733 Y12-8o20.p1k chr03 6 907 180929 181842 F 902 95.90 1270 accept 0 ALIGNMENT 991 Y12-8o21.q1k chr12 1224 36 286615 287804 C 1189 95.29 1245 accept 0 ALIGNMENT 938 Y12-8o21.p1k chr12 17 1074 284531 285603 F 1058 96.88 1305 accept 0 ALIGNMENT 1045 Y12-8o22.p1k chr02 19 1254 19482 20727 F 1236 95.95 1331 accept 0 ALIGNMENT 966 Y12-8o22.q1k chr02 1171 32 23962 25094 C 1140 96.14 1253 accept 0 ALIGNMENT 939 Y12-8o23.p1k chr10 1255 18 650504 651749 C 1238 93.13 1291 accept_chi 0 ALIGNMENT 802 Y12-8o23.q1k chr08 1016 35 408994 409967 C 982 95.62 1270 accept_chi 1 ALIGNMENT 203 Y12-8o24.q1k chr15 29 420 28764 29154 F 392 84.44 1348 accept 0 ALIGNMENT 0 Y12-8o24.p1k chr09 551 62 26136 26135 C 490 0.00 1380 reject_low 1 ALIGNMENT 0 Y12-8o24.p1k chr15 894 62 31330 31329 C 833 0.00 1380 reject_low 3 ALIGNMENT 0 Y12-8o24.p1k chr15 854 62 31291 31290 C 793 0.00 1380 reject_low 2 ALIGNMENT 20 Y12-8o24.p1k chr09 780 753 25695 25722 C 28 92.86 1380 reject_low 1 ALIGNMENT 23 Y12-8o24.p1k chr15 933 895 31292 31329 C 39 89.74 1380 reject_low 3 ALIGNMENT 68 Y12-8o24.p1k chr09 741 552 25941 26135 C 190 79.47 1380 reject_low 1 ALIGNMENT 180 Y12-8o24.q1k chr09 29 371 23010 23355 F 343 85.13 1348 reject_low 1 ALIGNMENT 34 Y12-8o24.p1k chr15 948 855 31201 31290 C 94 82.98 1380 reject_low 2 ALIGNMENT 0 Y12-8o24.p1k chr09 752 742 25723 25940 C 11 0.00 1380 reject_low 1 ALIGNMENT 882 Y12-8o24.p1k chr15 980 25 31213 32158 C 956 98.54 1380 accept 0 ALIGNMENT 968 Y12-8p02.q1k chr04 1257 32 570473 571684 C 1226 94.86 1324 accept 0 ALIGNMENT 950 Y12-8p02.p1k chr04 21 1184 566315 567497 F 1164 95.36 1345 accept 0 ALIGNMENT 910 Y12-8p03.q1k chr02 1133 28 320341 321431 C 1106 95.84 1393 accept 0 ALIGNMENT 836 Y12-8p03.p1k chr02 16 1110 317122 318215 F 1095 93.88 1409 accept 0 ALIGNMENT 975 Y12-8p04.q1k chr13 1142 17 260628 261752 C 1126 96.89 1295 accept_chi 1 ALIGNMENT 1077 Y12-8p04.p1k chr13 15 1323 383651 384978 F 1309 95.11 1391 accept_chi 0 ALIGNMENT 941 Y12-8p05.q1k chr11 1152 30 10863 11996 C 1123 96.17 1340 accept 0 ALIGNMENT 932 Y12-8p05.p1k chr11 22 1168 7167 8341 F 1147 95.82 1368 accept 0 ALIGNMENT 930 Y12-8p06.q1k chr09 1143 40 305881 306994 C 1104 95.92 1354 accept 0 ALIGNMENT 684 Y12-8p07.p1k chr12 1051 82 456810 457772 C 970 91.24 1421 reject_low 1 ALIGNMENT 706 Y12-8p07.p1k chr12 1134 82 465864 466909 C 1053 90.22 1421 accept 0 ALIGNMENT 1010 Y12-8p10.p1k chr03 23 1227 42301 43521 F 1205 95.85 1397 accept 0 ALIGNMENT 942 Y12-8p10.q1k chr03 1133 34 46881 47969 C 1100 96.45 1391 accept 0 ALIGNMENT 942 Y12-8p12.p1k chr04 1249 21 1030917 1032166 C 1229 94.30 1387 accept 0 ALIGNMENT 962 Y12-8p12.q1k chr04 41 1280 1027183 1028432 F 1240 93.95 1325 accept 0 ALIGNMENT 239 Y12-8p13.q1k chr09 345 32 69146 69458 C 314 92.68 1404 reject_low 1 ALIGNMENT 929 Y12-8p13.p1k chr11 1117 18 621127 622231 C 1100 97.27 1365 accept 0 ALIGNMENT 114 Y12-8p13.q1k chr12 120 341 64749 64970 F 222 84.23 1404 reject_low 4 ALIGNMENT 0 Y12-8p13.q1k chr12 341 716 65197 65196 F 376 0.00 1404 reject_low 3 ALIGNMENT 0 Y12-8p13.q1k chr12 716 341 498959 498958 C 376 0.00 1404 reject_low 2 ALIGNMENT 107 Y12-8p13.q1k chr12 120 334 64521 64735 F 215 83.72 1404 reject_low 5 ALIGNMENT 0 Y12-8p13.q1k chr12 335 716 64735 64734 F 382 0.00 1404 reject_low 5 ALIGNMENT 0 Y12-8p13.q1k chr12 342 716 64970 64969 F 375 0.00 1404 reject_low 4 ALIGNMENT 0 Y12-8p13.q1k chr09 716 346 69147 69146 C 371 0.00 1404 reject_low 1 ALIGNMENT 0 Y12-8p13.q1k chr12 62 119 64521 64520 F 58 0.00 1404 reject_low 5 ALIGNMENT 864 Y12-8p13.q1k chr11 32 1064 617708 618731 F 1033 96.13 1404 accept 0 ALIGNMENT 116 Y12-8p13.q1k chr12 120 340 64977 65197 F 221 84.62 1404 reject_low 3 ALIGNMENT 0 Y12-8p13.q1k chr12 62 119 64977 64976 F 58 0.00 1404 reject_low 3 ALIGNMENT 165 Y12-8p13.q1k chr12 340 122 498958 499176 C 219 92.24 1404 reject_low 2 ALIGNMENT 0 Y12-8p13.q1k chr12 62 119 64749 64748 F 58 0.00 1404 reject_low 4 ALIGNMENT 0 Y12-8p13.q1k chr12 121 62 499177 499176 C 60 0.00 1404 reject_low 2 ALIGNMENT 1065 Y12-8p16.p1k chr05 1281 24 183831 185103 C 1258 95.79 1391 accept 0 ALIGNMENT 944 Y12-8p16.q1k chr05 34 1232 179164 180356 F 1199 94.50 1334 accept 0 ALIGNMENT 577 Y12-8p17.q1k chr04 993 32 528510 529464 C 962 87.73 1337 accept 0 ALIGNMENT 577 Y12-8p17.q1k chr04 993 32 532395 533349 C 962 87.73 1337 accept 1 ALIGNMENT 577 Y12-8p17.q1k chr04 993 32 536280 537234 C 962 87.73 1337 accept 2 ALIGNMENT 832 Y12-8p18.q1k chr04 974 69 746214 747118 C 906 98.57 1337 reject_bad_break 0 ALIGNMENT 0 Y12-8p18.q1k chr15 109 806 1036171 1036170 F 698 0.00 1337 reject_low 1 ALIGNMENT 23 Y12-8p18.q1k chr15 69 108 1036132 1036171 F 40 100.00 1337 reject_low 1 ALIGNMENT 0 Y12-8p18.q1k chr04 68 69 747119 747104 C 0 0.00 1337 reject_bad_break 0 ALIGNMENT 30 Y12-8p18.q1k chr04 68 34 747105 747139 C 35 100.00 1337 reject_bad_break 0 ALIGNMENT 798 Y12-8p19.q1k chr13 39 978 660394 661329 F 940 96.49 1351 accept 0 ALIGNMENT 689 Y12-8p19.p1k chr13 1106 19 664705 665771 C 1088 90.72 1402 accept 0 ALIGNMENT 0 Y12-8p21.p1k chr15 398 62 438745 438744 C 337 0.00 1339 reject_low 28 ALIGNMENT 0 Y12-8p21.p1k chr01 62 716 160238 160237 F 655 0.00 1339 reject_low 31 ALIGNMENT 98 Y12-8p21.p1k chr01 717 948 160238 160468 F 232 65.09 1339 reject_low 31 ALIGNMENT 0 Y12-8p21.p1k chr11 811 513 578595 578594 C 299 0.00 1339 reject_low 27 ALIGNMENT 855 Y12-8p21.q1k chr13 1068 35 198212 199235 C 1034 95.65 1297 reject_low 16 ALIGNMENT 86 Y12-8p21.p1k chr03 717 891 124130 124303 F 175 83.43 1339 reject_low 36 ALIGNMENT 855 Y12-8p21.q1k chr04 35 1068 989736 990759 F 1034 95.65 1297 reject_low 11 ALIGNMENT 0 Y12-8p21.p1k chr07 510 811 701062 701061 F 302 0.00 1339 reject_low 30 ALIGNMENT 0 Y12-8p21.p1k chr10 717 62 472715 472714 C 656 0.00 1339 reject_low 33 ALIGNMENT 0 Y12-8p21.p1k chr05 62 717 448980 448979 F 656 0.00 1339 reject_low 32 ALIGNMENT 86 Y12-8p21.p1k chr06 725 891 161805 161970 F 167 84.43 1339 reject_low 42 ALIGNMENT 851 Y12-8p21.q1k chr01 35 1068 163259 164283 F 1034 95.55 1297 reject_low 19 ALIGNMENT 0 Y12-8p21.p1k chr12 398 62 875476 875475 C 337 0.00 1339 reject_low 26 ALIGNMENT 78 Y12-8p21.p1k chr04 891 718 1175467 1175639 C 174 82.18 1339 reject_low 44 ALIGNMENT 0 Y12-8p21.p1k chr16 62 398 769200 769199 F 337 0.00 1339 reject_low 29 ALIGNMENT 848 Y12-8p21.q1k chr16 1068 35 846289 847315 C 1034 95.45 1297 reject_low 21 ALIGNMENT 89 Y12-8p21.p1k chr05 738 891 498099 498251 F 154 86.36 1339 reject_low 38 ALIGNMENT 0 Y12-8p21.p1k chr15 811 513 438632 438631 C 299 0.00 1339 reject_low 28 ALIGNMENT 114 Y12-8p21.p1k chr12 515 399 875359 875475 C 117 99.15 1339 reject_low 26 ALIGNMENT 855 Y12-8p21.q1k chr08 35 1068 546625 547648 F 1034 95.65 1297 reject_low 13 ALIGNMENT 0 Y12-8p21.p1k chr15 737 62 595133 595132 C 676 0.00 1339 reject_low 35 ALIGNMENT 114 Y12-8p21.p1k chr16 399 512 769200 769313 F 114 100.00 1339 reject_low 29 ALIGNMENT 858 Y12-8p21.q1k chr04 35 1068 648514 649537 F 1034 95.74 1297 reject_low 4 ALIGNMENT 0 Y12-8p21.p1k chr03 727 62 151839 151838 C 666 0.00 1339 reject_low 41 ALIGNMENT 858 Y12-8p21.q1k chr15 1068 35 119583 120606 C 1034 95.74 1297 reject_low 9 ALIGNMENT 852 Y12-8p21.q1k chr13 35 1068 375717 376740 F 1034 95.55 1297 reject_low 18 ALIGNMENT 0 Y12-8p21.p1k chr06 62 724 161805 161804 F 663 0.00 1339 reject_low 42 ALIGNMENT 97 Y12-8p21.p1k chr05 718 948 448980 449209 F 231 64.94 1339 reject_low 32 ALIGNMENT 88 Y12-8p21.p1k chr15 727 891 2903 3066 F 165 84.85 1339 reject_low 37 ALIGNMENT 0 Y12-8p21.p1k chr11 398 62 578708 578707 C 337 0.00 1339 reject_low 27 ALIGNMENT 827 Y12-8p21.p1k chr07 891 16 115101 115976 C 876 99.32 1339 accept 0 ALIGNMENT 0 Y12-8p21.p1k chr07 737 62 535527 535526 C 676 0.00 1339 reject_low 39 ALIGNMENT 846 Y12-8p21.q1k chr10 1068 35 474258 475281 C 1034 95.36 1297 reject_low 22 ALIGNMENT 93 Y12-8p21.p1k chr16 718 891 856213 856385 F 174 85.06 1339 reject_low 34 ALIGNMENT 77 Y12-8p21.p1k chr09 720 891 300409 300581 F 172 82.56 1339 reject_low 45 ALIGNMENT 858 Y12-8p21.q1k chr04 35 1068 881315 882338 F 1034 95.74 1297 reject_low 5 ALIGNMENT 0 Y12-8p21.p1k chr04 717 62 1175640 1175639 C 656 0.00 1339 reject_low 44 ALIGNMENT 858 Y12-8p21.q1k chr16 35 1068 807658 808681 F 1034 95.74 1297 reject_low 10 ALIGNMENT 0 Y12-8p21.p1k chr07 62 394 700948 700947 F 333 0.00 1339 reject_low 30 ALIGNMENT 849 Y12-8p21.q1k chr07 35 1068 820413 821436 F 1034 95.45 1297 reject_low 20 ALIGNMENT 0 Y12-8p21.p1k chr02 717 62 327394 327393 C 656 0.00 1339 reject_low 43 ALIGNMENT 858 Y12-8p21.q1k chr05 35 1068 446413 447436 F 1034 95.74 1297 reject_low 1 ALIGNMENT 114 Y12-8p21.p1k chr11 512 399 578594 578707 C 114 100.00 1339 reject_low 27 ALIGNMENT 855 Y12-8p21.q1k chr12 35 1068 218102 219125 F 1034 95.65 1297 reject_low 14 ALIGNMENT 831 Y12-8p21.q1k chr16 35 1068 853646 854669 F 1034 94.87 1297 reject_low 24 ALIGNMENT 89 Y12-8p21.p1k chr12 738 891 220689 220841 F 154 86.36 1339 reject_low 40 ALIGNMENT 0 Y12-8p21.p1k chr05 62 737 498099 498098 F 676 0.00 1339 reject_low 38 ALIGNMENT 0 Y12-8p21.p1k chr12 62 737 220689 220688 F 676 0.00 1339 reject_low 40 ALIGNMENT 852 Y12-8p21.q1k chr10 1068 35 479842 480865 C 1034 95.55 1297 reject_low 17 ALIGNMENT 0 Y12-8p21.p1k chr03 62 716 124130 124129 F 655 0.00 1339 reject_low 36 ALIGNMENT 89 Y12-8p21.p1k chr07 891 738 535374 535526 C 154 86.36 1339 reject_low 39 ALIGNMENT 0 Y12-8p21.p1k chr15 62 726 2903 2902 F 665 0.00 1339 reject_low 37 ALIGNMENT 845 Y12-8p21.q1k chr12 1068 35 652703 653728 C 1034 95.36 1297 reject_low 23 ALIGNMENT 114 Y12-8p21.p1k chr04 512 391 359564 359686 C 122 98.36 1339 reject_low 25 ALIGNMENT 861 Y12-8p21.q1k chr13 35 1068 360019 361042 F 1034 95.84 1297 reject_low 3 ALIGNMENT 87 Y12-8p21.p1k chr03 891 728 151676 151838 C 164 84.76 1339 reject_low 41 ALIGNMENT 855 Y12-8p21.q1k chr04 1068 35 1097643 1098666 C 1034 95.65 1297 reject_low 12 ALIGNMENT 0 Y12-8p21.p1k chr16 62 717 856213 856212 F 656 0.00 1339 reject_low 34 ALIGNMENT 0 Y12-8p21.p1k chr12 811 516 875360 875359 C 296 0.00 1339 reject_low 26 ALIGNMENT 35 Y12-8p21.p1k chr05 838 743 449508 449601 C 96 81.25 1339 reject_low 1 ALIGNMENT 0 Y12-8p21.p1k chr16 513 811 769313 769312 F 299 0.00 1339 reject_low 29 ALIGNMENT 858 Y12-8p21.q1k chr07 35 1068 564864 565887 F 1034 95.74 1297 reject_low 7 ALIGNMENT 94 Y12-8p21.p1k chr10 948 718 472485 472714 C 231 64.50 1339 reject_low 33 ALIGNMENT 0 Y12-8p21.p1k chr04 811 513 359565 359564 C 299 0.00 1339 reject_low 25 ALIGNMENT 114 Y12-8p21.p1k chr15 512 399 438631 438744 C 114 100.00 1339 reject_low 28 ALIGNMENT 82 Y12-8p21.p1k chr02 891 718 327224 327393 C 174 83.91 1339 reject_low 43 ALIGNMENT 858 Y12-8p21.q1k chr14 35 1068 99625 100648 F 1034 95.74 1297 reject_low 8 ALIGNMENT 858 Y12-8p21.q1k chr05 35 1068 495512 496535 F 1034 95.74 1297 reject_low 6 ALIGNMENT 0 Y12-8p21.p1k chr09 62 719 300409 300408 F 658 0.00 1339 reject_low 45 ALIGNMENT 0 Y12-8p21.p1k chr04 390 62 359687 359686 C 329 0.00 1339 reject_low 25 ALIGNMENT 112 Y12-8p21.p1k chr07 395 509 700948 701062 F 115 99.13 1339 reject_low 30 ALIGNMENT 0 Y12-8p21.p1k chr05 742 62 449602 449601 C 681 0.00 1339 reject_low 1 ALIGNMENT 92 Y12-8p21.p1k chr15 891 738 594980 595132 C 154 87.01 1339 reject_low 35 ALIGNMENT 864 Y12-8p21.q1k chr02 1068 35 222917 223940 C 1034 95.94 1297 reject_low 2 ALIGNMENT 855 Y12-8p21.q1k chr13 1068 35 186045 187068 C 1034 95.65 1297 reject_low 15 ALIGNMENT 866 Y12-8p23.q1k chr14 33 1135 764159 765243 F 1103 95.10 1228 accept 0 ALIGNMENT 951 Y12-8p24.q1k chr12 32 1089 513879 514923 F 1058 97.73 1220 accept 0 ALIGNMENT 992 Y12-8p24.p1k chr12 1226 18 519048 520250 C 1209 96.20 1285 accept 0 ALIGNMENT 1034 Y12-9a01.p1k chr02 1351 16 218217 219541 C 1336 94.61 1446 accept 0 ALIGNMENT 896 Y12-9a01.q1k chr02 32 1026 213588 214566 F 995 98.09 1239 accept 0 ALIGNMENT 912 Y12-9a03.q1k chr12 17 1135 994161 995273 F 1119 95.62 1316 accept 0 ALIGNMENT 886 Y12-9a04.q1k chr15 1140 29 951002 952121 C 1112 95.14 1292 accept 0 ALIGNMENT 1029 Y12-9a04.p1k chr15 20 1280 946667 947911 F 1261 95.56 1444 accept 0 ALIGNMENT 947 Y12-9a05.p1k chr12 1150 29 463582 464712 C 1122 95.63 1423 accept 1 ALIGNMENT 947 Y12-9a05.p1k chr12 1150 29 454445 455575 C 1122 95.63 1423 accept 0 ALIGNMENT 731 Y12-9a06.q1k chr04 31 969 435442 436369 F 939 94.14 1368 accept 0 ALIGNMENT 1017 Y12-9a06.p1k chr04 1269 18 439119 440387 C 1252 95.69 1414 accept 0 ALIGNMENT 1007 Y12-9a07.q1k chr02 31 1244 672291 673500 F 1214 95.47 1301 accept 0 ALIGNMENT 930 Y12-9a08.q1k chr04 1157 36 1179992 1181110 C 1122 96.26 1285 accept 0 ALIGNMENT 969 Y12-9a08.p1k chr04 19 1215 1177277 1178484 F 1197 95.15 1445 accept 0 ALIGNMENT 408 Y12-9a09.q1k chr06 38 889 33762 34614 F 852 83.33 1338 reject_low 1 ALIGNMENT 1048 Y12-9a09.p1k chr15 25 1197 70830 72017 F 1173 97.78 1417 accept 0 ALIGNMENT 935 Y12-9a09.q1k chr15 1175 32 75353 76494 C 1144 95.19 1338 accept 0 ALIGNMENT 1068 Y12-9a10.p1k chr05 22 1208 200920 202111 F 1187 97.14 1411 accept 0 ALIGNMENT 993 Y12-9a11.q1k chr13 1270 33 313422 314647 C 1238 95.07 1322 accept 0 ALIGNMENT 1007 Y12-9a13.p1k chr16 1230 18 629850 631068 C 1213 95.47 1404 accept 0 ALIGNMENT 922 Y12-9a13.q1k chr16 37 1105 626740 627798 F 1069 96.63 1281 accept 0 ALIGNMENT 1036 Y12-9a14.p1k chr12 20 1238 648865 650102 F 1219 96.23 1383 accept 0 ALIGNMENT 1070 Y12-9a14.q1k chr12 1295 39 660090 661344 C 1257 95.54 1296 accept 0 ALIGNMENT 997 Y12-9a15.q1k chr12 1219 34 899088 900289 C 1186 95.70 1219 accept_chi 1 ALIGNMENT 1001 Y12-9a15.p1k chr11 20 1129 184850 185966 F 1110 98.38 1368 accept_chi 0 ALIGNMENT 937 Y12-9a16.q1k chr12 1148 29 101923 103025 C 1120 96.25 1253 accept 0 ALIGNMENT 1028 Y12-9a16.p1k chr12 16 1147 98920 100063 F 1132 97.70 1388 accept 0 ALIGNMENT 983 Y12-9a17.p1k chr15 1121 21 518360 519472 C 1101 97.82 1350 accept 0 ALIGNMENT 893 Y12-9a17.q1k chr15 40 1115 514739 515809 F 1076 95.45 1263 accept 0 ALIGNMENT 1008 Y12-9a18.q1k chr07 35 1235 852831 854034 F 1201 95.84 1235 accept 0 ALIGNMENT 401 Y12-9a19.p1k chr04 591 20 1289091 1289655 C 572 91.78 1653 accept 0 ALIGNMENT 928 Y12-9a19.q1k chr04 28 1118 1284904 1285992 F 1091 96.88 1237 accept 0 ALIGNMENT 0 Y12-9a20.p1k chr05 489 62 307194 307193 C 428 0.00 1334 reject_low 1 ALIGNMENT 966 Y12-9a20.p1k chr09 20 1153 231077 232229 F 1134 96.65 1334 accept 0 ALIGNMENT 370 Y12-9a20.p1k chr05 905 490 306777 307193 C 416 96.63 1334 reject_low 1 ALIGNMENT 975 Y12-9a20.q1k chr09 1187 30 234937 236080 C 1158 96.37 1257 accept 0 ALIGNMENT 1019 Y12-9a21.q1k chr15 1199 32 650305 651477 C 1168 96.92 1201 accept 0 ALIGNMENT 980 Y12-9a21.p1k chr15 20 1126 647422 648546 F 1107 97.65 1298 accept 0 ALIGNMENT 1030 Y12-9a22.q1k chr07 63 1214 798261 799417 F 1152 96.70 1224 accept 0 ALIGNMENT 995 Y12-9a22.p1k chr07 1190 22 803203 804384 C 1169 96.92 1314 accept 0 ALIGNMENT 31 Y12-9a22.q1k chr07 70 37 798219 798252 C 34 100.00 1224 reject_low 1 ALIGNMENT 0 Y12-9a22.q1k chr07 874 71 798220 798219 C 804 0.00 1224 reject_low 1 ALIGNMENT 818 Y12-9a23.q1k chr15 23 962 44752 45687 F 940 97.23 1129 accept 0 ALIGNMENT 946 Y12-9a23.p1k chr15 1182 24 49814 50988 C 1159 95.86 1296 accept 0 ALIGNMENT 1033 Y12-9a24.p1k chr16 1229 20 681626 682824 C 1210 96.36 1313 accept 0 ALIGNMENT 965 Y12-9b02.p1k chr05 1165 23 403186 404348 C 1143 96.41 1350 accept 0 ALIGNMENT 349 Y12-9b03.p1k chr14 543 22 477352 477869 C 522 89.85 1515 accept 0 ALIGNMENT 1009 Y12-9b03.q1k chr14 33 1241 472272 473493 F 1209 95.04 1338 accept 0 ALIGNMENT 1047 Y12-9b04.p1k chr13 19 1277 27061 28330 F 1259 95.95 1396 accept 0 ALIGNMENT 920 Y12-9b05.p1k chr10 1120 21 641099 642211 C 1100 95.73 1378 accept 0 ALIGNMENT 985 Y12-9b05.q1k chr10 32 1211 637115 638272 F 1180 96.10 1353 accept 0 ALIGNMENT 967 Y12-9b06.p1k chr15 1123 31 646095 647197 C 1093 97.62 1381 accept 0 ALIGNMENT 1058 Y12-9b07.q1k chr12 1254 38 456385 457608 C 1217 95.89 1316 accept 0 ALIGNMENT 1058 Y12-9b07.q1k chr12 1254 38 465522 466745 C 1217 95.89 1316 accept 1 ALIGNMENT 1079 Y12-9b07.p1k chr12 22 1232 462766 463996 F 1211 97.27 1435 accept 1 ALIGNMENT 1079 Y12-9b07.p1k chr12 22 1232 453629 454859 F 1211 97.27 1435 accept 0 ALIGNMENT 0 Y12-9b08.p1k chr02 906 647 235396 235395 C 260 0.00 1491 reject_low 1 ALIGNMENT 327 Y12-9b08.p1k chr02 646 238 235395 235803 C 409 93.64 1491 reject_low 1 ALIGNMENT 1072 Y12-9b08.p1k chr04 28 1291 915306 916560 F 1264 96.12 1491 accept 0 ALIGNMENT 0 Y12-9b08.p1k chr02 237 62 235804 235803 C 176 0.00 1491 reject_low 1 ALIGNMENT 962 Y12-9b09.p1k chr14 27 1179 235060 236231 F 1153 96.36 1384 accept 0 ALIGNMENT 1024 Y12-9b09.q1k chr14 1216 41 238674 239859 C 1176 96.68 1338 accept 0 ALIGNMENT 1051 Y12-9b12.q1k chr13 27 1233 210303 211524 F 1207 96.85 1295 accept 0 ALIGNMENT 1015 Y12-9b12.p1k chr13 1197 18 215596 216784 C 1180 96.44 1388 accept 0 ALIGNMENT 1050 Y12-9b13.q1k chr15 38 1230 36636 37840 F 1193 96.98 1264 accept 0 ALIGNMENT 1008 Y12-9b13.p1k chr15 1216 19 40824 42021 C 1198 95.83 1426 accept 0 ALIGNMENT 989 Y12-9b14.q1k chr14 39 1219 458700 459901 F 1181 95.94 1264 accept 0 ALIGNMENT 1014 Y12-9b14.p1k chr14 1211 27 462855 464048 C 1185 96.29 1398 accept 0 ALIGNMENT 0 Y12-9b17.p1k chr14 286 62 726219 726218 C 225 0.00 1381 reject_low 4 ALIGNMENT 89 Y12-9b17.p1k chr14 384 287 726122 726218 C 98 97.96 1381 reject_low 4 ALIGNMENT 93 Y12-9b17.p1k chr12 384 285 962954 963053 C 100 98.00 1381 reject_low 2 ALIGNMENT 88 Y12-9b17.p1k chr02 287 381 9583 9677 F 95 97.89 1381 reject_low 5 ALIGNMENT 0 Y12-9b17.p1k chr10 890 374 424345 424344 C 517 0.00 1381 reject_low 6 ALIGNMENT 89 Y12-9b17.p1k chr04 284 383 519736 519837 F 100 97.00 1381 reject_low 3 ALIGNMENT 1011 Y12-9b17.q1k chr02 1252 38 351716 352923 C 1215 95.97 1252 accept 0 ALIGNMENT 0 Y12-9b17.p1k chr04 384 890 519837 519836 F 507 0.00 1381 reject_low 3 ALIGNMENT 0 Y12-9b17.p1k chr12 284 62 963054 963053 C 223 0.00 1381 reject_low 2 ALIGNMENT 95 Y12-9b17.p1k chr11 279 383 84205 84309 F 105 97.14 1381 reject_low 1 ALIGNMENT 1000 Y12-9b17.p1k chr02 16 1172 347327 348504 F 1157 96.97 1381 accept 0 ALIGNMENT 0 Y12-9b17.p1k chr10 286 62 424431 424430 C 225 0.00 1381 reject_low 6 ALIGNMENT 0 Y12-9b17.p1k chr12 890 385 962955 962954 C 506 0.00 1381 reject_low 2 ALIGNMENT 0 Y12-9b17.p1k chr11 384 890 84309 84308 F 507 0.00 1381 reject_low 1 ALIGNMENT 86 Y12-9b17.p1k chr10 373 287 424344 424430 C 87 100.00 1381 reject_low 6 ALIGNMENT 0 Y12-9b17.p1k chr14 890 385 726123 726122 C 506 0.00 1381 reject_low 4 ALIGNMENT 0 Y12-9b17.p1k chr04 62 283 519736 519735 F 222 0.00 1381 reject_low 3 ALIGNMENT 0 Y12-9b17.p1k chr02 382 890 9677 9676 F 509 0.00 1381 reject_low 5 ALIGNMENT 0 Y12-9b17.p1k chr02 62 286 9583 9582 F 225 0.00 1381 reject_low 5 ALIGNMENT 0 Y12-9b17.p1k chr11 62 278 84205 84204 F 217 0.00 1381 reject_low 1 ALIGNMENT 1046 Y12-9b18.q1k chr16 37 1235 911323 912525 F 1199 96.58 1236 accept 0 ALIGNMENT 940 Y12-9b18.p1k chr16 1095 19 915682 916775 C 1077 97.31 1326 accept 0 ALIGNMENT 944 Y12-9b19.q1k chr15 28 1161 76395 77530 F 1134 95.41 1238 accept 0 ALIGNMENT 219 Y12-9b19.q1k chr06 481 75 33402 33808 C 407 85.01 1238 reject_low 1 ALIGNMENT 984 Y12-9b19.p1k chr15 1245 34 79210 80412 C 1212 94.88 1421 accept 0 ALIGNMENT 0 Y12-9b19.q1k chr06 815 482 33403 33402 C 334 0.00 1238 reject_low 1 ALIGNMENT 1031 Y12-9b21.p1k chr07 1184 19 281617 282786 C 1166 96.66 1329 accept 0 ALIGNMENT 941 Y12-9b21.q1k chr07 33 1191 278207 279351 F 1159 95.43 1237 accept 0 ALIGNMENT 1042 Y12-9b22.q1k chr13 36 1222 573496 574680 F 1187 97.14 1236 accept 0 ALIGNMENT 700 Y12-9b22.p1k chr13 806 25 577797 578580 C 782 97.31 1388 accept 0 ALIGNMENT 946 Y12-9b23.q1k chr13 33 1120 355504 356594 F 1088 97.52 1120 accept_chi 1 ALIGNMENT 1066 Y12-9b23.p1k chr16 1246 20 681569 682797 C 1227 96.41 1285 accept_chi 0 ALIGNMENT 896 Y12-9b24.q1k chr15 1038 34 360902 361896 C 1005 98.11 1127 accept 0 ALIGNMENT 1062 Y12-9b24.p1k chr15 21 1269 356677 357919 F 1249 96.08 1298 accept 0 ALIGNMENT 977 Y12-9c02.p1k chr08 18 1110 264226 265324 F 1093 97.44 1335 accept 0 ALIGNMENT 921 Y12-9c02.q1k chr08 1209 32 267132 268302 C 1178 94.57 1283 accept 0 ALIGNMENT 954 Y12-9c03.p1k chr04 20 1107 1192638 1193737 F 1088 97.15 1335 accept 0 ALIGNMENT 1052 Y12-9c03.q1k chr04 1307 33 1196817 1198103 C 1275 94.98 1373 accept 0 ALIGNMENT 901 Y12-9c04.q1k chr01 30 1083 41825 42893 F 1054 97.06 1295 accept 0 ALIGNMENT 998 Y12-9c04.p1k chr01 1185 18 44565 45749 C 1168 96.15 1398 accept 0 ALIGNMENT 1029 Y12-9c06.p1k chr13 1223 21 217479 218692 C 1203 96.18 1420 accept 0 ALIGNMENT 1050 Y12-9c06.q1k chr13 39 1249 214597 215816 F 1211 96.04 1345 accept 0 ALIGNMENT 1027 Y12-9c07.q1k chr11 32 1286 654543 655804 F 1255 94.82 1286 accept 0 ALIGNMENT 0 Y12-9c07.p1k chr03 713 850 11225 11224 F 138 0.00 1381 reject_low 1 ALIGNMENT 905 Y12-9c07.p1k chr11 1080 18 657828 658908 C 1063 96.52 1381 accept 0 ALIGNMENT 651 Y12-9c07.p1k chr03 14 712 10523 11225 F 699 98.86 1381 reject_low 1 ALIGNMENT 28 Y12-9c08.p1k chr11 300 336 184507 184543 F 37 100.00 1465 reject_low 1 ALIGNMENT 781 Y12-9c08.q1k chr01 1102 32 197231 198320 C 1071 93.00 1247 accept 0 ALIGNMENT 956 Y12-9c08.p1k chr01 22 1261 193701 194936 F 1240 94.03 1465 accept 0 ALIGNMENT 0 Y12-9c08.p1k chr11 337 859 184543 184542 F 523 0.00 1465 reject_low 1 ALIGNMENT 0 Y12-9c08.p1k chr11 62 299 184507 184506 F 238 0.00 1465 reject_low 1 ALIGNMENT 980 Y12-9c10.p1k chr13 1183 25 393778 394951 C 1159 97.07 1399 accept 0 ALIGNMENT 945 Y12-9c10.q1k chr13 36 1142 390800 391917 F 1107 96.21 1345 accept 0 ALIGNMENT 952 Y12-9c11.q1k chr16 1143 27 840432 841541 C 1117 94.36 1232 accept 0 ALIGNMENT 515 Y12-9c11.p1k chr07 511 1137 763774 764412 F 627 95.69 1392 reject_low 1 ALIGNMENT 938 Y12-9c11.p1k chr16 29 1122 837418 838529 F 1094 96.89 1392 accept 0 ALIGNMENT 0 Y12-9c11.p1k chr07 62 510 763774 763773 F 449 0.00 1392 reject_low 1 ALIGNMENT 0 Y12-9c13.q1k chr10 215 849 355076 355075 F 635 0.00 1285 reject_low 2 ALIGNMENT 0 Y12-9c13.q1k chr16 215 849 436573 436572 F 635 0.00 1285 reject_low 3 ALIGNMENT 0 Y12-9c13.q1k chr16 62 150 436510 436509 F 89 0.00 1285 reject_low 3 ALIGNMENT 36 Y12-9c13.q1k chr16 151 214 436510 436573 F 64 87.50 1285 reject_low 3 ALIGNMENT 0 Y12-9c13.q1k chr12 849 211 657471 657470 C 639 0.00 1285 reject_low 1 ALIGNMENT 41 Y12-9c13.q1k chr10 78 214 354941 355076 F 137 79.56 1285 reject_low 2 ALIGNMENT 967 Y12-9c13.p1k chr08 1109 25 392628 393726 C 1085 97.60 1384 accept 0 ALIGNMENT 0 Y12-9c13.q1k chr10 62 77 354941 354940 F 16 0.00 1285 reject_low 2 ALIGNMENT 38 Y12-9c13.q1k chr12 210 43 657470 657630 C 168 79.17 1285 reject_low 1 ALIGNMENT 921 Y12-9c13.q1k chr08 32 1165 389652 390769 F 1134 95.50 1285 accept 0 ALIGNMENT 980 Y12-9c14.p1k chr05 27 1144 317241 318373 F 1118 96.87 1379 accept 0 ALIGNMENT 984 Y12-9c14.q1k chr05 1270 34 321122 322343 C 1237 95.07 1274 accept 0 ALIGNMENT 1050 Y12-9c15.q1k chr02 1272 27 613071 614333 C 1246 95.99 1291 accept 0 ALIGNMENT 1002 Y12-9c15.p1k chr02 18 1111 610202 611307 F 1094 97.81 1370 accept 0 ALIGNMENT 1077 Y12-9c16.p1k chr13 20 1247 714459 715700 F 1228 96.58 1400 accept 0 ALIGNMENT 989 Y12-9c16.q1k chr13 1207 31 717673 718878 C 1177 96.52 1276 accept 0 ALIGNMENT 1104 Y12-9c17.p1k chr13 1306 21 33141 34430 C 1286 95.88 1442 accept 0 ALIGNMENT 1059 Y12-9c17.q1k chr13 34 1243 28706 29913 F 1210 96.28 1245 accept 0 ALIGNMENT 351 Y12-9c18.p1k chr02 920 25 187209 188104 C 896 80.69 1410 reject_low 4 ALIGNMENT 29 Y12-9c18.q1k chr15 60 1 24791 24847 C 60 86.67 1213 reject_low 3 ALIGNMENT 0 Y12-9c18.q1k chr07 533 62 1068998 1068997 C 472 0.00 1213 reject_low 5 ALIGNMENT 33 Y12-9c18.q1k chr09 60 1 19036 19093 C 60 88.33 1213 ambiguous_tel 1 ALIGNMENT 33 Y12-9c18.q1k chr10 60 1 19018 19075 C 60 88.33 1213 ambiguous_tel 0 ALIGNMENT 710 Y12-9c18.q1k chr09 1038 61 18061 19010 C 978 92.84 1213 ambiguous_tel 1 ALIGNMENT 166 Y12-9c18.q1k chr07 545 1042 1076613 1077098 F 498 79.72 1213 reject_low 7 ALIGNMENT 995 Y12-9c18.p1k chr09 19 1129 14895 16006 F 1111 97.39 1410 ambiguous_tel 1 ALIGNMENT 0 Y12-9c18.q1k chr15 60 61 24766 24790 C 0 0.00 1213 reject_low 3 ALIGNMENT 995 Y12-9c18.p1k chr10 19 1129 14878 15989 F 1111 97.39 1410 ambiguous_tel 0 ALIGNMENT 714 Y12-9c18.q1k chr10 1038 61 18044 18992 C 978 92.94 1213 ambiguous_tel 0 ALIGNMENT 0 Y12-9c18.q1k chr07 62 544 1076613 1076612 F 483 0.00 1213 reject_low 7 ALIGNMENT 0 Y12-9c18.q1k chr09 60 61 19011 19035 C 0 0.00 1213 ambiguous_tel 1 ALIGNMENT 277 Y12-9c18.q1k chr07 1038 534 1068505 1068997 C 505 86.93 1213 reject_low 5 ALIGNMENT 0 Y12-9c18.q1k chr02 62 544 805353 805352 F 483 0.00 1213 reject_low 6 ALIGNMENT 169 Y12-9c18.q1k chr02 545 1042 805353 805838 F 498 79.92 1213 reject_low 6 ALIGNMENT 715 Y12-9c18.q1k chr15 1038 61 23801 24765 C 978 92.33 1213 reject_low 3 ALIGNMENT 0 Y12-9c18.q1k chr10 60 61 18993 19017 C 0 0.00 1213 ambiguous_tel 0 ALIGNMENT 881 Y12-9c18.p1k chr14 1116 19 750498 751596 C 1098 94.44 1410 reject_low 2 ALIGNMENT 1033 Y12-9c19.q1k chr07 32 1219 889295 890479 F 1188 96.63 1237 accept 0 ALIGNMENT 1067 Y12-9c19.p1k chr07 1226 13 893801 895034 C 1214 96.79 1365 accept 0 ALIGNMENT 989 Y12-9c20.q1k chr07 1255 37 44034 45237 C 1219 95.16 1262 accept 0 ALIGNMENT 1061 Y12-9c20.p1k chr07 19 1274 40994 42257 F 1256 95.86 1408 accept 0 ALIGNMENT 1008 Y12-9c21.q1k chr13 1203 28 347220 348383 C 1176 96.34 1216 accept 0 ALIGNMENT 1013 Y12-9c21.p1k chr13 16 1171 344408 345573 F 1156 96.71 1324 accept 0 ALIGNMENT 1020 Y12-9c22.q1k chr04 32 1191 238581 239752 F 1160 96.55 1191 accept 0 ALIGNMENT 1000 Y12-9c22.p1k chr04 1231 22 241851 243064 C 1210 95.87 1355 accept 0 ALIGNMENT 1028 Y12-9c23.q1k chr06 1155 32 171909 173032 C 1124 98.04 1156 accept 0 ALIGNMENT 1045 Y12-9c23.p1k chr06 29 1261 168364 169604 F 1233 95.86 1346 accept 0 ALIGNMENT 954 Y12-9c24.q1k chr02 33 1105 428234 429289 F 1073 97.76 1199 accept_chi 1 ALIGNMENT 1024 Y12-9c24.p1k chr11 1192 21 159565 160746 C 1172 97.18 1313 accept_chi 0 ALIGNMENT 463 Y12-9c24.q1k chr02 33 908 430084 430959 F 876 84.47 1199 reject_low 2 ALIGNMENT 343 Y12-9c24.q1k chr01 899 36 225446 226309 C 864 80.09 1199 reject_low 3 ALIGNMENT 338 Y12-9c24.q1k chr08 866 36 552127 552957 C 831 80.39 1199 reject_low 4 ALIGNMENT 1002 Y12-9d03.p1k chr05 1202 26 328215 329413 C 1177 95.75 1376 accept 0 ALIGNMENT 1045 Y12-9d03.q1k chr05 30 1250 324242 325476 F 1221 96.31 1335 accept 0 ALIGNMENT 1071 Y12-9d04.p1k chr16 17 1259 611097 612345 F 1243 96.14 1407 accept 0 ALIGNMENT 879 Y12-9d04.q1k chr16 1101 33 615255 616339 C 1069 95.51 1320 accept 0 ALIGNMENT 1070 Y12-9d06.q1k chr11 43 1229 37473 38657 F 1187 97.14 1375 accept 0 ALIGNMENT 991 Y12-9d06.p1k chr11 1121 22 40912 42025 C 1100 97.91 1383 accept 0 ALIGNMENT 0 Y12-9d07.p1k chr02 62 819 464124 464123 F 758 0.00 1436 reject_low 1 ALIGNMENT 1014 Y12-9d07.p1k chr02 1220 17 65570 66788 C 1204 95.85 1436 accept 0 ALIGNMENT 24 Y12-9d07.p1k chr02 820 869 464124 464173 F 50 90.00 1436 reject_low 1 ALIGNMENT 959 Y12-9d07.q1k chr02 33 1228 62287 63499 F 1196 94.82 1292 accept 0 ALIGNMENT 255 Y12-9d08.q1k chr12 747 1249 451419 451944 F 503 85.69 1305 reject_low 1 ALIGNMENT 1026 Y12-9d08.p1k chr12 1169 20 463106 464268 C 1150 97.04 1410 accept 0 ALIGNMENT 803 Y12-9d08.q1k chr12 34 1249 459818 461081 F 1216 90.62 1305 accept 0 ALIGNMENT 1026 Y12-9d08.p1k chr12 1169 20 453969 455131 C 1150 97.04 1410 reject_low 1 ALIGNMENT 0 Y12-9d08.q1k chr12 62 746 451419 451418 F 685 0.00 1305 reject_low 1 ALIGNMENT 935 Y12-9d09.q1k chr13 1096 35 59129 60198 C 1062 97.65 1340 accept 0 ALIGNMENT 1029 Y12-9d09.p1k chr13 21 1292 55779 57067 F 1272 95.13 1453 accept 0 ALIGNMENT 986 Y12-9d11.p1k chr04 1127 17 832802 833925 C 1111 97.57 1407 accept 0 ALIGNMENT 1060 Y12-9d11.q1k chr04 28 1231 828804 830009 F 1204 97.51 1232 accept 0 ALIGNMENT 0 Y12-9d11.q1k chr13 921 633 339552 339551 C 289 0.00 1232 reject_low 1 ALIGNMENT 130 Y12-9d11.q1k chr13 632 443 339551 339738 C 190 91.05 1232 reject_low 1 ALIGNMENT 0 Y12-9d11.q1k chr13 442 62 339739 339738 C 381 0.00 1232 reject_low 1 ALIGNMENT 1039 Y12-9d13.q1k chr13 1270 31 614894 616131 C 1240 95.97 1270 accept 0 ALIGNMENT 976 Y12-9d13.p1k chr13 19 1136 611954 613062 F 1118 97.50 1446 accept 0 ALIGNMENT 978 Y12-9d14.p1k chr12 1175 33 465414 466571 C 1143 95.80 1376 accept 1 ALIGNMENT 1021 Y12-9d14.q1k chr12 28 1261 461927 463154 F 1234 95.14 1265 accept 1 ALIGNMENT 1021 Y12-9d14.q1k chr12 28 1261 452790 454017 F 1234 95.14 1265 accept 0 ALIGNMENT 978 Y12-9d14.p1k chr12 1175 33 456277 457434 C 1143 95.80 1376 accept 0 ALIGNMENT 955 Y12-9d15.q1k chr13 1248 32 863949 865169 C 1217 93.84 1319 accept 0 ALIGNMENT 1006 Y12-9d15.p1k chr13 19 1126 859408 860532 F 1108 97.47 1347 accept 0 ALIGNMENT 176 Y12-9d16.p1k chr06 732 1019 99237 99526 F 288 87.50 1383 reject_low 9 ALIGNMENT 162 Y12-9d16.p1k chr07 1003 732 1080390 1080662 C 272 86.76 1383 reject_low 14 ALIGNMENT 165 Y12-9d16.p1k chr12 732 1003 13095 13367 F 272 87.13 1383 reject_low 11 ALIGNMENT 0 Y12-9d16.p1k chr03 720 62 308168 308167 C 659 0.00 1383 reject_low 3 ALIGNMENT 0 Y12-9d16.p1k chr12 62 731 13095 13094 F 670 0.00 1383 reject_low 11 ALIGNMENT 156 Y12-9d16.p1k chr05 1003 732 63806 64078 C 272 86.03 1383 reject_low 20 ALIGNMENT 0 Y12-9d16.p1k chr07 62 731 6302 6301 F 670 0.00 1383 reject_low 10 ALIGNMENT 208 Y12-9d16.p1k chr13 1075 721 922651 923009 C 355 86.76 1383 reject_low 6 ALIGNMENT 0 Y12-9d16.p1k chr04 731 62 1523583 1523582 C 670 0.00 1383 reject_low 17 ALIGNMENT 0 Y12-9d16.p1k chr11 62 731 1823 1822 F 670 0.00 1383 reject_low 5 ALIGNMENT 165 Y12-9d16.p1k chr14 1003 732 781996 782268 C 272 87.13 1383 reject_low 12 ALIGNMENT 162 Y12-9d16.p1k chr10 732 1003 8788 9060 F 272 86.76 1383 reject_low 16 ALIGNMENT 211 Y12-9d16.p1k chr03 1075 721 307809 308167 C 355 87.04 1383 reject_low 3 ALIGNMENT 0 Y12-9d16.p1k chr12 731 62 1063267 1063266 C 670 0.00 1383 reject_low 18 ALIGNMENT 0 Y12-9d16.p1k chr06 62 731 99237 99236 F 670 0.00 1383 reject_low 9 ALIGNMENT 0 Y12-9d16.p1k chr09 720 62 434296 434295 C 659 0.00 1383 reject_low 2 ALIGNMENT 156 Y12-9d16.p1k chr02 1003 732 809129 809401 C 272 86.03 1383 reject_low 19 ALIGNMENT 179 Y12-9d16.p1k chr01 732 1075 176665 177009 F 344 85.17 1383 reject_low 8 ALIGNMENT 0 Y12-9d16.p1k chr14 731 62 782269 782268 C 670 0.00 1383 reject_low 12 ALIGNMENT 0 Y12-9d16.p1k chr05 731 62 64079 64078 C 670 0.00 1383 reject_low 20 ALIGNMENT 0 Y12-9d16.p1k chr15 720 62 1083205 1083204 C 659 0.00 1383 reject_low 7 ALIGNMENT 159 Y12-9d16.p1k chr12 1003 732 1062994 1063266 C 272 86.40 1383 reject_low 18 ALIGNMENT 165 Y12-9d16.p1k chr07 732 1003 6302 6574 F 272 87.13 1383 reject_low 10 ALIGNMENT 0 Y12-9d16.p1k chr15 62 731 11560 11559 F 670 0.00 1383 reject_low 13 ALIGNMENT 215 Y12-9d16.p1k chr11 732 1075 1823 2170 F 344 88.08 1383 reject_low 5 ALIGNMENT 211 Y12-9d16.p1k chr16 721 1075 7937 8295 F 355 87.04 1383 reject_low 4 ALIGNMENT 159 Y12-9d16.p1k chr04 1003 732 1523310 1523582 C 272 86.40 1383 reject_low 17 ALIGNMENT 1013 Y12-9d16.p1k chr12 18 1198 221981 223181 F 1181 96.61 1383 accept 0 ALIGNMENT 0 Y12-9d16.p1k chr02 731 62 809402 809401 C 670 0.00 1383 reject_low 19 ALIGNMENT 0 Y12-9d16.p1k chr01 62 731 176665 176664 F 670 0.00 1383 reject_low 8 ALIGNMENT 0 Y12-9d16.p1k chr10 62 731 8788 8787 F 670 0.00 1383 reject_low 16 ALIGNMENT 262 Y12-9d16.p1k chr12 1075 718 94758 95119 C 358 91.62 1383 reject_low 1 ALIGNMENT 162 Y12-9d16.p1k chr08 732 1003 11933 12205 F 272 86.76 1383 reject_low 15 ALIGNMENT 165 Y12-9d16.p1k chr15 732 1003 11560 11832 F 272 87.13 1383 reject_low 13 ALIGNMENT 0 Y12-9d16.p1k chr16 62 720 7937 7936 F 659 0.00 1383 reject_low 4 ALIGNMENT 0 Y12-9d16.p1k chr08 62 731 11933 11932 F 670 0.00 1383 reject_low 15 ALIGNMENT 0 Y12-9d16.p1k chr07 731 62 1080663 1080662 C 670 0.00 1383 reject_low 14 ALIGNMENT 0 Y12-9d16.p1k chr13 720 62 923010 923009 C 659 0.00 1383 reject_low 6 ALIGNMENT 214 Y12-9d16.p1k chr09 1075 721 433937 434295 C 355 87.32 1383 reject_low 2 ALIGNMENT 209 Y12-9d16.p1k chr15 1064 721 1082857 1083204 C 344 87.50 1383 reject_low 7 ALIGNMENT 0 Y12-9d16.p1k chr12 717 62 95120 95119 C 656 0.00 1383 reject_low 1 ALIGNMENT 946 Y12-9d16.q1k chr12 1176 24 225730 226879 C 1153 95.32 1316 accept 0 ALIGNMENT 1037 Y12-9d17.q1k chr15 33 1244 547495 548713 F 1212 96.29 1244 accept_chi 0 ALIGNMENT 971 Y12-9d17.p1k chr08 17 1146 196124 197262 F 1130 96.46 1388 accept_chi 1 ALIGNMENT 951 Y12-9d18.p1k chr09 24 1140 181901 183033 F 1117 97.14 1367 accept 0 ALIGNMENT 960 Y12-9d18.q1k chr09 1122 32 185020 186104 C 1091 97.34 1255 accept 0 ALIGNMENT 1044 Y12-9d19.q1k chr04 34 1226 1079524 1080724 F 1193 96.56 1227 accept 0 ALIGNMENT 994 Y12-9d19.p1k chr04 1250 22 1082822 1084065 C 1229 95.04 1398 accept 0 ALIGNMENT 1034 Y12-9d20.q1k chr12 31 1227 859397 860588 F 1197 96.74 1250 accept_chi 0 ALIGNMENT 1015 Y12-9d20.p1k chr04 1178 15 84198 85373 C 1164 96.82 1383 accept_chi 1 ALIGNMENT 1040 Y12-9d21.p1k chr11 28 1183 47783 48944 F 1156 97.23 1360 accept 0 ALIGNMENT 994 Y12-9d21.q1k chr11 1211 31 50828 52002 C 1181 97.29 1211 accept 0 ALIGNMENT 0 Y12-9d22.p1k chr10 854 178 414869 414868 C 677 0.00 1323 reject_low 1 ALIGNMENT 0 Y12-9d22.p1k chr05 175 854 135507 135506 F 680 0.00 1323 reject_low 5 ALIGNMENT 0 Y12-9d22.p1k chr09 62 83 300219 300218 F 22 0.00 1323 reject_low 8 ALIGNMENT 87 Y12-9d22.p1k chr05 84 174 435740 435831 F 91 98.90 1323 reject_low 4 ALIGNMENT 0 Y12-9d22.p1k chr11 83 62 202726 202725 C 22 0.00 1323 reject_low 9 ALIGNMENT 86 Y12-9d22.p1k chr07 83 177 185711 185805 F 95 96.84 1323 reject_low 2 ALIGNMENT 79 Y12-9d22.p1k chr07 165 82 122272 122356 C 84 98.81 1323 reject_low 10 ALIGNMENT 85 Y12-9d22.p1k chr05 84 174 135417 135507 F 91 97.80 1323 reject_low 5 ALIGNMENT 0 Y12-9d22.p1k chr13 166 854 480693 480692 F 689 0.00 1323 reject_low 11 ALIGNMENT 0 Y12-9d22.p1k chr07 178 854 185805 185804 F 677 0.00 1323 reject_low 2 ALIGNMENT 77 Y12-9d22.p1k chr10 177 76 414868 414969 C 102 92.16 1323 reject_low 1 ALIGNMENT 75 Y12-9d22.p1k chr04 169 92 1201735 1201812 C 78 98.72 1323 reject_low 12 ALIGNMENT 0 Y12-9d22.p1k chr05 62 83 435740 435739 F 22 0.00 1323 reject_low 4 ALIGNMENT 0 Y12-9d22.p1k chr04 91 62 1201813 1201812 C 30 0.00 1323 reject_low 12 ALIGNMENT 78 Y12-9d22.p1k chr13 82 165 480611 480693 F 84 98.81 1323 reject_low 11 ALIGNMENT 0 Y12-9d22.p1k chr13 62 81 480611 480610 F 20 0.00 1323 reject_low 11 ALIGNMENT 0 Y12-9d22.p1k chr07 81 62 876482 876481 C 20 0.00 1323 reject_low 7 ALIGNMENT 87 Y12-9d22.p1k chr03 83 169 151272 151358 F 87 100.00 1323 reject_low 6 ALIGNMENT 86 Y12-9d22.p1k chr04 80 174 1352444 1352538 F 95 96.84 1323 reject_low 3 ALIGNMENT 81 Y12-9d22.p1k chr11 165 84 202644 202725 C 82 100.00 1323 reject_low 9 ALIGNMENT 0 Y12-9d22.p1k chr09 175 854 300308 300307 F 680 0.00 1323 reject_low 8 ALIGNMENT 0 Y12-9d22.p1k chr05 62 83 135417 135416 F 22 0.00 1323 reject_low 5 ALIGNMENT 0 Y12-9d22.p1k chr03 62 82 151272 151271 F 21 0.00 1323 reject_low 6 ALIGNMENT 0 Y12-9d22.p1k chr07 854 166 876399 876398 C 689 0.00 1323 reject_low 7 ALIGNMENT 0 Y12-9d22.p1k chr04 854 170 1201736 1201735 C 685 0.00 1323 reject_low 12 ALIGNMENT 0 Y12-9d22.p1k chr07 62 82 185711 185710 F 21 0.00 1323 reject_low 2 ALIGNMENT 0 Y12-9d22.p1k chr04 175 854 1352538 1352537 F 680 0.00 1323 reject_low 3 ALIGNMENT 0 Y12-9d22.p1k chr07 854 166 122273 122272 C 689 0.00 1323 reject_low 10 ALIGNMENT 83 Y12-9d22.p1k chr07 165 82 876398 876481 C 84 100.00 1323 reject_low 7 ALIGNMENT 824 Y12-9d22.p1k chr16 1249 24 580948 582198 C 1226 90.86 1323 accept 0 ALIGNMENT 0 Y12-9d22.p1k chr06 165 854 226747 226746 F 690 0.00 1323 reject_low 13 ALIGNMENT 0 Y12-9d22.p1k chr03 170 854 151358 151357 F 685 0.00 1323 reject_low 6 ALIGNMENT 914 Y12-9d22.q1k chr16 32 1185 575880 577021 F 1154 94.71 1226 accept 0 ALIGNMENT 0 Y12-9d22.p1k chr04 62 79 1352444 1352443 F 18 0.00 1323 reject_low 3 ALIGNMENT 77 Y12-9d22.p1k chr09 84 174 300219 300308 F 91 95.60 1323 reject_low 8 ALIGNMENT 0 Y12-9d22.p1k chr06 62 80 226664 226663 F 19 0.00 1323 reject_low 13 ALIGNMENT 0 Y12-9d22.p1k chr07 81 62 122357 122356 C 20 0.00 1323 reject_low 10 ALIGNMENT 0 Y12-9d22.p1k chr05 175 854 435831 435830 F 680 0.00 1323 reject_low 4 ALIGNMENT 70 Y12-9d22.p1k chr06 81 164 226664 226747 F 84 96.43 1323 reject_low 13 ALIGNMENT 0 Y12-9d22.p1k chr11 854 166 202645 202644 C 689 0.00 1323 reject_low 9 ALIGNMENT 995 Y12-9d23.p1k chr09 18 1226 94357 95576 F 1209 95.12 1312 accept 0 ALIGNMENT 955 Y12-9d23.q1k chr09 1170 31 99834 100966 C 1140 96.23 1173 accept 0 ALIGNMENT 892 Y12-9d24.p1k chr11 18 1094 158377 159448 F 1077 96.10 1362 accept 0 ALIGNMENT 949 Y12-9d24.q1k chr11 1114 29 162976 164059 C 1086 96.69 1151 accept 0 ALIGNMENT 0 Y12-9d24.p1k chr08 604 62 148114 148113 C 543 0.00 1362 reject_low 1 ALIGNMENT 128 Y12-9d24.p1k chr08 861 605 147857 148113 C 257 83.27 1362 reject_low 1 ALIGNMENT 968 Y12-9e01.p1k chr06 26 1138 149634 150761 F 1113 97.57 1353 accept 0 ALIGNMENT 967 Y12-9e01.q1k chr06 1063 28 152920 153956 C 1036 98.17 1338 accept 0 ALIGNMENT 70 Y12-9e02.p1k chr08 162 56 527177 527283 C 107 88.79 1391 reject_low 19 ALIGNMENT 0 Y12-9e02.p1k chr08 862 163 526503 526502 C 700 0.00 1391 reject_low 13 ALIGNMENT 228 Y12-9e02.p1k chr01 720 81 218409 219044 C 640 79.38 1391 reject_low 4 ALIGNMENT 48 Y12-9e02.p1k chr01 56 147 26213 26304 F 92 84.78 1391 reject_low 24 ALIGNMENT 0 Y12-9e02.p1k chr01 721 862 13876 13875 F 142 0.00 1391 reject_low 5 ALIGNMENT 0 Y12-9e02.p1k chr01 862 172 206521 206520 C 691 0.00 1391 reject_low 20 ALIGNMENT 97 Y12-9e02.p1k chr08 162 21 526772 526914 C 142 90.14 1391 reject_low 12 ALIGNMENT 118 Y12-9e02.p1k chr01 21 184 25502 25666 F 164 91.46 1391 reject_low 8 ALIGNMENT 0 Y12-9e02.p1k chr01 143 183 13328 13340 F 41 0.00 1391 reject_low 5 ALIGNMENT 88 Y12-9e02.p1k chr08 162 21 526637 526779 C 142 88.03 1391 reject_low 15 ALIGNMENT 0 Y12-9e02.p1k chr08 862 163 526773 526772 C 700 0.00 1391 reject_low 12 ALIGNMENT 124 Y12-9e02.p1k chr01 184 21 206372 206536 C 164 92.68 1391 reject_low 7 ALIGNMENT 0 Y12-9e02.p1k chr08 862 833 538910 538909 C 30 0.00 1391 reject_low 3 ALIGNMENT 175 Y12-9e02.p1k chr01 184 720 13341 13876 F 537 78.58 1391 reject_low 5 ALIGNMENT 0 Y12-9e02.p1k chr01 166 862 26187 26186 F 697 0.00 1391 reject_low 22 ALIGNMENT 91 Y12-9e02.p1k chr08 162 21 526502 526644 C 142 88.73 1391 reject_low 13 ALIGNMENT 100 Y12-9e02.p1k chr01 184 21 206237 206401 C 164 87.80 1391 reject_low 10 ALIGNMENT 0 Y12-9e02.p1k chr01 862 185 205698 205697 C 678 0.00 1391 reject_low 6 ALIGNMENT 85 Y12-9e02.p1k chr08 162 21 527042 527184 C 142 87.32 1391 reject_low 16 ALIGNMENT 64 Y12-9e02.p1k chr01 56 159 25403 25506 F 104 87.50 1391 reject_low 21 ALIGNMENT 0 Y12-9e02.p1k chr01 148 862 26304 26303 F 715 0.00 1391 reject_low 24 ALIGNMENT 0 Y12-9e02.p1k chr01 185 862 25666 25665 F 678 0.00 1391 reject_low 8 ALIGNMENT 66 Y12-9e02.p1k chr01 171 56 206520 206635 C 116 86.21 1391 reject_low 20 ALIGNMENT 0 Y12-9e02.p1k chr08 862 185 526886 526885 C 678 0.00 1391 reject_low 9 ALIGNMENT 0 Y12-9e02.p1k chr01 862 185 205968 205967 C 678 0.00 1391 reject_low 14 ALIGNMENT 81 Y12-9e02.p1k chr01 171 21 205845 205996 C 151 85.43 1391 reject_low 18 ALIGNMENT 79 Y12-9e02.p1k chr01 184 21 206102 206266 C 164 83.54 1391 reject_low 17 ALIGNMENT 539 Y12-9e02.p1k chr08 1009 56 525388 526338 C 954 86.16 1391 reject_low 1 ALIGNMENT 45 Y12-9e02.p1k chr01 54 142 13239 13327 F 89 84.27 1391 reject_low 5 ALIGNMENT 103 Y12-9e02.p1k chr08 184 21 526885 527049 C 164 88.41 1391 reject_low 9 ALIGNMENT 0 Y12-9e02.p1k chr01 862 185 206373 206372 C 678 0.00 1391 reject_low 7 ALIGNMENT 0 Y12-9e02.p1k chr01 862 721 218410 218409 C 142 0.00 1391 reject_low 4 ALIGNMENT 0 Y12-9e02.p1k chr01 148 862 26034 26033 F 715 0.00 1391 reject_low 23 ALIGNMENT 217 Y12-9e02.p1k chr08 832 184 538909 539556 C 649 78.58 1391 reject_low 3 ALIGNMENT 0 Y12-9e02.p1k chr08 862 163 526638 526637 C 700 0.00 1391 reject_low 15 ALIGNMENT 0 Y12-9e02.p1k chr08 862 178 526353 526352 C 685 0.00 1391 reject_low 11 ALIGNMENT 0 Y12-9e02.p1k chr08 862 163 527043 527042 C 700 0.00 1391 reject_low 16 ALIGNMENT 51 Y12-9e02.p1k chr01 56 165 26078 26187 F 110 82.73 1391 reject_low 22 ALIGNMENT 92 Y12-9e02.p1k chr01 184 46 205967 206105 C 139 89.21 1391 reject_low 14 ALIGNMENT 0 Y12-9e02.p1k chr08 183 62 539557 539556 C 122 0.00 1391 reject_low 3 ALIGNMENT 0 Y12-9e02.p1k chr08 862 163 527178 527177 C 700 0.00 1391 reject_low 19 ALIGNMENT 0 Y12-9e02.p1k chr01 160 862 25506 25505 F 703 0.00 1391 reject_low 21 ALIGNMENT 0 Y12-9e02.p1k chr01 862 185 206103 206102 C 678 0.00 1391 reject_low 17 ALIGNMENT 48 Y12-9e02.p1k chr01 56 147 25943 26034 F 92 84.78 1391 reject_low 23 ALIGNMENT 96 Y12-9e02.p1k chr08 177 21 526352 526509 C 157 87.90 1391 reject_low 11 ALIGNMENT 0 Y12-9e02.p1k chr01 80 62 219045 219044 C 19 0.00 1391 reject_low 4 ALIGNMENT 127 Y12-9e02.p1k chr01 184 21 205697 205861 C 164 93.29 1391 reject_low 6 ALIGNMENT 494 Y12-9e02.p1k chr01 56 880 27023 27843 F 825 87.39 1391 reject_low 2 ALIGNMENT 818 Y12-9e02.p1k chr01 1249 56 203141 204340 C 1194 90.37 1391 accept 0 ALIGNMENT 0 Y12-9e02.p1k chr01 862 172 205846 205845 C 691 0.00 1391 reject_low 18 ALIGNMENT 0 Y12-9e02.p1k chr01 862 185 206238 206237 C 678 0.00 1391 reject_low 10 ALIGNMENT 110 Y12-9e03.q1k chr05 318 807 127087 127568 F 490 75.71 1343 accept_chi 1 ALIGNMENT 990 Y12-9e03.p1k chr04 1133 15 403249 404369 C 1119 97.86 1414 accept_chi 0 ALIGNMENT 1041 Y12-9e04.p1k chr14 1238 14 554819 556046 C 1225 96.08 1411 accept 0 ALIGNMENT 936 Y12-9e04.q1k chr14 30 1141 551404 552526 F 1112 96.13 1318 accept 0 ALIGNMENT 1018 Y12-9e05.q1k chr13 1272 37 96606 97849 C 1236 95.31 1356 accept 0 ALIGNMENT 1006 Y12-9e05.p1k chr13 20 1142 93044 94174 F 1123 97.51 1420 accept 0 ALIGNMENT 45 Y12-9e06.q1k chr07 83 39 823487 823531 C 45 100.00 1324 reject_low 9 ALIGNMENT 0 Y12-9e06.q1k chr13 89 881 420665 420664 F 793 0.00 1324 reject_low 6 ALIGNMENT 47 Y12-9e06.q1k chr05 88 39 469447 469496 C 50 98.00 1324 reject_low 5 ALIGNMENT 45 Y12-9e06.q1k chr13 39 83 586664 586708 F 45 100.00 1324 reject_low 11 ALIGNMENT 46 Y12-9e06.q1k chr11 39 90 307818 307869 F 52 96.15 1324 reject_low 4 ALIGNMENT 47 Y12-9e06.q1k chr13 39 88 420616 420665 F 50 98.00 1324 reject_low 6 ALIGNMENT 0 Y12-9e06.q1k chr05 881 86 438695 438694 C 796 0.00 1324 reject_low 7 ALIGNMENT 0 Y12-9e06.q1k chr10 881 91 378270 378269 C 791 0.00 1324 reject_low 1 ALIGNMENT 47 Y12-9e06.q1k chr05 85 39 438694 438740 C 47 100.00 1324 reject_low 7 ALIGNMENT 46 Y12-9e06.q1k chr07 39 90 73857 73908 F 52 96.15 1324 reject_low 3 ALIGNMENT 0 Y12-9e06.q1k chr12 89 881 687939 687938 F 793 0.00 1324 reject_low 2 ALIGNMENT 0 Y12-9e06.q1k chr05 881 89 469448 469447 C 793 0.00 1324 reject_low 5 ALIGNMENT 52 Y12-9e06.q1k chr10 90 39 378269 378320 C 52 100.00 1324 reject_low 1 ALIGNMENT 0 Y12-9e06.q1k chr15 84 881 663885 663884 F 798 0.00 1324 reject_low 12 ALIGNMENT 50 Y12-9e06.q1k chr12 39 88 687890 687939 F 50 100.00 1324 reject_low 2 ALIGNMENT 928 Y12-9e06.q1k chr11 1142 39 378255 379367 C 1104 96.20 1324 accept 0 ALIGNMENT 0 Y12-9e06.q1k chr07 91 881 73908 73907 F 791 0.00 1324 reject_low 3 ALIGNMENT 0 Y12-9e06.q1k chr07 84 881 412370 412369 F 798 0.00 1324 reject_low 8 ALIGNMENT 0 Y12-9e06.q1k chr11 91 881 307869 307868 F 791 0.00 1324 reject_low 4 ALIGNMENT 0 Y12-9e06.q1k chr13 84 881 586708 586707 F 798 0.00 1324 reject_low 11 ALIGNMENT 45 Y12-9e06.q1k chr15 39 83 663841 663885 F 45 100.00 1324 reject_low 12 ALIGNMENT 0 Y12-9e06.q1k chr07 881 84 823488 823487 C 798 0.00 1324 reject_low 9 ALIGNMENT 0 Y12-9e06.q1k chr13 84 881 372517 372516 F 798 0.00 1324 reject_low 10 ALIGNMENT 1000 Y12-9e06.p1k chr11 18 1155 374028 375184 F 1138 97.19 1392 accept 0 ALIGNMENT 45 Y12-9e06.q1k chr07 39 83 412326 412370 F 45 100.00 1324 reject_low 8 ALIGNMENT 45 Y12-9e06.q1k chr13 39 83 372473 372517 F 45 100.00 1324 reject_low 10 ALIGNMENT 0 Y12-9e08.p1k chr12 886 611 167935 167934 C 276 0.00 1337 reject_low 6 ALIGNMENT 0 Y12-9e08.p1k chr05 610 886 86693 86692 F 277 0.00 1337 reject_low 7 ALIGNMENT 0 Y12-9e08.p1k chr07 325 326 115065 115196 C 0 0.00 1337 reject_low 17 ALIGNMENT 0 Y12-9e08.p1k chr04 886 604 980967 980966 C 283 0.00 1337 reject_low 18 ALIGNMENT 57 Y12-9e08.p1k chr07 447 326 535764 535886 C 122 84.43 1337 reject_low 12 ALIGNMENT 0 Y12-9e08.p1k chr07 886 448 114944 114943 C 439 0.00 1337 reject_low 17 ALIGNMENT 0 Y12-9e08.p1k chr11 886 448 162837 162836 C 439 0.00 1337 reject_low 16 ALIGNMENT 0 Y12-9e08.p1k chr07 282 62 115240 115239 C 221 0.00 1337 reject_low 17 ALIGNMENT 0 Y12-9e08.p1k chr01 519 62 182598 182597 C 458 0.00 1337 reject_low 5 ALIGNMENT 55 Y12-9e08.p1k chr12 326 452 592915 593042 F 127 84.25 1337 reject_low 10 ALIGNMENT 0 Y12-9e08.p1k chr13 886 611 259150 259149 C 276 0.00 1337 reject_low 2 ALIGNMENT 0 Y12-9e08.p1k chr07 886 448 535765 535764 C 439 0.00 1337 reject_low 12 ALIGNMENT 0 Y12-9e08.p1k chr11 325 62 162965 162964 C 264 0.00 1337 reject_low 16 ALIGNMENT 0 Y12-9e08.p1k chr02 62 518 227077 227076 F 457 0.00 1337 reject_low 4 ALIGNMENT 0 Y12-9e08.p1k chr01 886 611 182508 182507 C 276 0.00 1337 reject_low 5 ALIGNMENT 0 Y12-9e08.p1k chr13 512 62 259247 259246 C 451 0.00 1337 reject_low 2 ALIGNMENT 88 Y12-9e08.p1k chr04 517 609 1305617 1305710 F 93 98.92 1337 reject_low 3 ALIGNMENT 0 Y12-9e08.p1k chr07 450 886 823313 823312 F 437 0.00 1337 reject_low 11 ALIGNMENT 0 Y12-9e08.p1k chr10 886 619 523911 523910 C 268 0.00 1337 reject_low 1 ALIGNMENT 0 Y12-9e08.p1k chr04 62 516 1305617 1305616 F 455 0.00 1337 reject_low 3 ALIGNMENT 88 Y12-9e08.p1k chr07 609 520 561658 561747 C 90 100.00 1337 reject_low 8 ALIGNMENT 0 Y12-9e08.p1k chr04 518 449 981051 981163 C 70 0.00 1337 reject_low 18 ALIGNMENT 95 Y12-9e08.p1k chr10 618 518 523910 524009 C 101 99.01 1337 reject_low 1 ALIGNMENT 26 Y12-9e08.p1k chr04 448 366 981164 981246 C 83 83.13 1337 reject_low 18 ALIGNMENT 0 Y12-9e08.p1k chr12 519 62 168025 168024 C 458 0.00 1337 reject_low 6 ALIGNMENT 0 Y12-9e08.p1k chr07 325 62 402085 402084 C 264 0.00 1337 reject_low 14 ALIGNMENT 55 Y12-9e08.p1k chr07 448 326 401961 402084 C 123 83.74 1337 reject_low 14 ALIGNMENT 0 Y12-9e08.p1k chr07 62 325 823189 823188 F 264 0.00 1337 reject_low 11 ALIGNMENT 0 Y12-9e08.p1k chr08 519 62 133101 133100 C 458 0.00 1337 reject_low 9 ALIGNMENT 0 Y12-9e08.p1k chr07 886 449 401962 401961 C 438 0.00 1337 reject_low 14 ALIGNMENT 0 Y12-9e08.p1k chr12 453 886 593042 593041 F 434 0.00 1337 reject_low 10 ALIGNMENT 41 Y12-9e08.p1k chr11 447 326 162836 162964 C 122 81.15 1337 reject_low 16 ALIGNMENT 54 Y12-9e08.p1k chr07 447 326 931691 931813 C 122 83.61 1337 reject_low 15 ALIGNMENT 76 Y12-9e08.p1k chr07 447 326 114943 115064 C 122 89.34 1337 reject_low 17 ALIGNMENT 0 Y12-9e08.p1k chr04 365 62 981247 981246 C 304 0.00 1337 reject_low 18 ALIGNMENT 221 Y12-9e08.p1k chr04 22 272 436896 437146 F 251 97.61 1337|0,3 accept 0 ALIGNMENT 0 Y12-9e08.p1k chr04 610 886 1305710 1305709 F 277 0.00 1337 reject_low 3 ALIGNMENT 57 Y12-9e08.p1k chr07 326 447 817607 817729 F 122 84.43 1337 reject_low 13 ALIGNMENT 985 Y12-9e08.q1k chr04 1171 37 439268 440415 C 1135 97.27 1316 accept 0 ALIGNMENT 84 Y12-9e08.p1k chr04 603 519 980966 981050 C 85 100.00 1337 reject_low 18 ALIGNMENT 89 Y12-9e08.p1k chr12 610 520 167934 168024 C 91 100.00 1337 reject_low 6 ALIGNMENT 0 Y12-9e08.p1k chr07 325 62 931814 931813 C 264 0.00 1337 reject_low 15 ALIGNMENT 0 Y12-9e08.p1k chr12 62 325 592915 592914 F 264 0.00 1337 reject_low 10 ALIGNMENT 22 Y12-9e08.p1k chr07 325 283 115197 115239 C 43 88.37 1337 reject_low 17 ALIGNMENT 0 Y12-9e08.p1k chr07 886 448 931692 931691 C 439 0.00 1337 reject_low 15 ALIGNMENT 0 Y12-9e08.p1k chr07 886 610 561659 561658 C 277 0.00 1337 reject_low 8 ALIGNMENT 0 Y12-9e08.p1k chr07 519 62 561748 561747 C 458 0.00 1337 reject_low 8 ALIGNMENT 0 Y12-9e08.p1k chr05 62 519 86604 86603 F 458 0.00 1337 reject_low 7 ALIGNMENT 0 Y12-9e08.p1k chr07 325 62 535887 535886 C 264 0.00 1337 reject_low 12 ALIGNMENT 88 Y12-9e08.p1k chr05 520 609 86604 86693 F 90 100.00 1337 reject_low 7 ALIGNMENT 90 Y12-9e08.p1k chr02 519 610 227077 227168 F 92 100.00 1337 reject_low 4 ALIGNMENT 663 Y12-9e08.p1k chr04 267 1105 437516 438376 F 839 94.99 1337|3,0 accept 0 ALIGNMENT 0 Y12-9e08.p1k chr07 62 325 817607 817606 F 264 0.00 1337 reject_low 13 ALIGNMENT 83 Y12-9e08.p1k chr08 610 520 133010 133100 C 91 97.80 1337 reject_low 9 ALIGNMENT 0 Y12-9e08.p1k chr04 270 269 437144 437518 F 0 0.00 1337 accept 0 ALIGNMENT 93 Y12-9e08.p1k chr13 610 513 259149 259246 C 98 98.98 1337 reject_low 2 ALIGNMENT 0 Y12-9e08.p1k chr07 448 886 817729 817728 F 439 0.00 1337 reject_low 13 ALIGNMENT 0 Y12-9e08.p1k chr10 517 62 524010 524009 C 456 0.00 1337 reject_low 1 ALIGNMENT 0 Y12-9e08.p1k chr08 886 611 133011 133010 C 276 0.00 1337 reject_low 9 ALIGNMENT 89 Y12-9e08.p1k chr01 610 520 182507 182597 C 91 100.00 1337 reject_low 5 ALIGNMENT 59 Y12-9e08.p1k chr07 326 449 823189 823313 F 124 84.68 1337 reject_low 11 ALIGNMENT 0 Y12-9e08.p1k chr02 611 886 227168 227167 F 276 0.00 1337 reject_low 4 ALIGNMENT 995 Y12-9e09.p1k chr15 22 1140 585853 586989 F 1119 97.05 1416 accept_chi 1 ALIGNMENT 1027 Y12-9e09.q1k chr13 1275 35 870062 871318 C 1241 95.65 1346 accept_chi 0 ALIGNMENT 962 Y12-9e11.q1k chr15 1204 32 474550 475736 C 1173 95.82 1288 accept 0 ALIGNMENT 1045 Y12-9e11.p1k chr15 19 1176 471087 472257 F 1158 97.67 1403 accept 0 ALIGNMENT 1039 Y12-9e12.q1k chr07 1274 33 35100 36367 C 1242 95.65 1291 accept 0 ALIGNMENT 995 Y12-9e12.p1k chr07 19 1137 31876 33007 F 1119 97.41 1405 accept 0 ALIGNMENT 0 Y12-9e13.q1k chr04 942 394 526428 526427 C 549 0.00 1280 reject_low 1 ALIGNMENT 0 Y12-9e13.q1k chrm 179 942 62037 62036 F 764 0.00 1280 reject_low 2 ALIGNMENT 1007 Y12-9e13.p1k chr02 19 1192 359438 360629 F 1174 96.25 1402 accept 0 ALIGNMENT 88 Y12-9e13.q1k chr04 393 179 526427 526639 C 215 81.86 1280 reject_low 1 ALIGNMENT 0 Y12-9e13.q1k chr04 178 62 526640 526639 C 117 0.00 1280 reject_low 1 ALIGNMENT 69 Y12-9e13.q1k chrm 47 178 61906 62037 F 132 85.61 1280 reject_low 2 ALIGNMENT 1041 Y12-9e13.q1k chr02 1216 37 362800 363986 C 1180 97.20 1280 accept 0 ALIGNMENT 1012 Y12-9e14.q1k chr02 37 1301 478714 479990 F 1265 94.62 1302 accept 0 ALIGNMENT 325 Y12-9e14.q1k chr16 33 365 701636 701969 F 333 99.40 1302 reject_low 1 ALIGNMENT 1017 Y12-9e14.p1k chr02 1139 24 482308 483433 C 1116 98.03 1373 accept 0 ALIGNMENT 0 Y12-9e14.q1k chr16 366 809 701969 701968 F 444 0.00 1302 reject_low 1 ALIGNMENT 0 Y12-9e15.q1k chr05 867 689 354357 354356 C 179 0.00 1297 reject_low 3 ALIGNMENT 0 Y12-9e15.q1k chr07 867 325 110803 110802 C 543 0.00 1297 reject_low 49 ALIGNMENT 0 Y12-9e15.q1k chr08 62 324 85540 85539 F 263 0.00 1297 reject_low 10 ALIGNMENT 0 Y12-9e15.q1k chr08 688 62 116534 116533 C 627 0.00 1297 reject_low 25 ALIGNMENT 61 Y12-9e15.q1k chr13 797 697 168358 168457 C 101 88.12 1297 reject_low 33 ALIGNMENT 0 Y12-9e15.q1k chr03 62 696 84629 84628 F 635 0.00 1297 reject_low 40 ALIGNMENT 0 Y12-9e15.q1k chr02 324 62 643849 643848 C 263 0.00 1297 reject_low 1 ALIGNMENT 262 Y12-9e15.q1k chr13 324 32 168349 168641 C 293 98.63 1297 reject_low 16 ALIGNMENT 319 Y12-9e15.q1k chr02 694 325 643477 643848 C 370 97.03 1297 reject_low 1 ALIGNMENT 54 Y12-9e15.q1k chr03 697 791 84518 84610 F 95 87.37 1297 reject_low 48 ALIGNMENT 0 Y12-9e15.q1k chr01 792 867 183453 183452 F 76 0.00 1297 reject_low 26 ALIGNMENT 0 Y12-9e15.q1k chr08 689 867 85905 85904 F 179 0.00 1297 reject_low 10 ALIGNMENT 0 Y12-9e15.q1k chr08 62 688 133885 133884 F 627 0.00 1297 reject_low 23 ALIGNMENT 67 Y12-9e15.q1k chr08 797 697 91772 91871 C 101 90.10 1297 reject_low 29 ALIGNMENT 0 Y12-9e15.q1k chr03 304 867 84717 84716 F 564 0.00 1297 reject_low 43 ALIGNMENT 0 Y12-9e15.q1k chr02 867 689 35849 35848 C 179 0.00 1297 reject_low 5 ALIGNMENT 0 Y12-9e15.q1k chr03 786 867 84717 84716 F 82 0.00 1297 reject_low 40 ALIGNMENT 0 Y12-9e15.q1k chr03 792 867 84610 84609 F 76 0.00 1297 reject_low 48 ALIGNMENT 0 Y12-9e15.q1k chr09 867 798 197146 197145 C 70 0.00 1297 reject_low 39 ALIGNMENT 48 Y12-9e15.q1k chr08 785 697 133209 133297 C 89 86.52 1297 reject_low 51 ALIGNMENT 0 Y12-9e15.q1k chr09 256 62 197205 197204 C 195 0.00 1297 reject_low 12 ALIGNMENT 0 Y12-9e15.q1k chr09 867 689 196651 196650 C 179 0.00 1297 reject_low 12 ALIGNMENT 38 Y12-9e15.q1k chr09 317 257 197143 197204 C 61 91.80 1297 reject_low 12 ALIGNMENT 20 Y12-9e15.q1k chr04 64 43 513514 513535 C 22 100.00 1297 reject_low 44 ALIGNMENT 0 Y12-9e15.q1k chr07 62 324 110864 110863 F 263 0.00 1297 reject_low 4 ALIGNMENT 319 Y12-9e15.q1k chr05 688 325 354356 354721 C 364 97.53 1297 reject_low 3 ALIGNMENT 0 Y12-9e15.q1k chr16 867 689 442740 442739 C 179 0.00 1297 reject_low 9 ALIGNMENT 0 Y12-9e15.q1k chr05 324 62 354722 354721 C 263 0.00 1297 reject_low 3 ALIGNMENT 54 Y12-9e15.q1k chr03 697 791 90661 90753 F 95 87.37 1297 reject_low 45 ALIGNMENT 0 Y12-9e15.q1k chr01 62 688 183350 183349 F 627 0.00 1297 reject_low 26 ALIGNMENT 0 Y12-9e15.q1k chr08 867 318 116424 116423 C 550 0.00 1297 reject_low 28 ALIGNMENT 0 Y12-9e15.q1k chr10 696 62 203812 203811 C 635 0.00 1297 reject_low 34 ALIGNMENT 0 Y12-9e15.q1k chr05 798 867 354837 354836 F 70 0.00 1297 reject_low 38 ALIGNMENT 0 Y12-9e15.q1k chr08 62 324 91392 91391 F 263 0.00 1297 reject_low 8 ALIGNMENT 86 Y12-9e15.q1k chr08 797 689 116425 116533 C 109 93.58 1297 reject_low 25 ALIGNMENT 0 Y12-9e15.q1k chr08 696 153 133298 133327 C 544 0.00 1297 reject_low 51 ALIGNMENT 0 Y12-9e15.q1k chr01 318 867 189744 189743 F 550 0.00 1297 reject_low 11 ALIGNMENT 47 Y12-9e15.q1k chr03 697 785 84629 84717 F 89 85.39 1297 reject_low 40 ALIGNMENT 0 Y12-9e15.q1k chr08 801 867 133996 133995 F 67 0.00 1297 reject_low 23 ALIGNMENT 30 Y12-9e15.q1k chr03 213 303 84626 84717 F 91 80.22 1297 reject_low 43 ALIGNMENT 162 Y12-9e15.q1k chr07 272 73 111230 111428 C 200 96.50 1297|2,0 reject_low 49 ALIGNMENT 310 Y12-9e15.q1k chr02 688 325 35848 36213 C 364 96.70 1297 reject_low 5 ALIGNMENT 0 Y12-9e15.q1k chr05 325 867 62474 62473 F 543 0.00 1297 reject_low 14 ALIGNMENT 64 Y12-9e15.q1k chr08 797 697 389189 389288 C 101 89.11 1297 reject_low 31 ALIGNMENT 0 Y12-9e15.q1k chr09 324 318 197016 197142 C 7 0.00 1297 reject_low 12 ALIGNMENT 671 Y12-9e15.q1k chr14 1172 325 631619 632486 C 848 94.46 1297 accept 0 ALIGNMENT 0 Y12-9e15.q1k chr08 867 786 133210 133209 C 82 0.00 1297 reject_low 51 ALIGNMENT 0 Y12-9e15.q1k chr08 692 867 91760 91759 F 176 0.00 1297 reject_low 8 ALIGNMENT 0 Y12-9e15.q1k chr10 689 867 197834 197833 F 179 0.00 1297 reject_low 6 ALIGNMENT 54 Y12-9e15.q1k chr01 697 791 189644 189736 F 95 87.37 1297 reject_low 50 ALIGNMENT 60 Y12-9e15.q1k chr14 315 216 632009 632109 C 100 89.00 1297 reject_low 37 ALIGNMENT 0 Y12-9e15.q1k chr10 867 325 203705 203704 C 543 0.00 1297 reject_low 22 ALIGNMENT 0 Y12-9e15.q1k chr07 270 271 110856 111231 C 0 0.00 1297 reject_low 49 ALIGNMENT 320 Y12-9e15.q1k chr13 688 325 808536 808900 C 364 97.53 1297 reject_low 2 ALIGNMENT 0 Y12-9e15.q1k chr10 689 867 203689 203688 F 179 0.00 1297 reject_low 7 ALIGNMENT 60 Y12-9e15.q1k chr04 791 697 513700 513792 C 95 89.47 1297 reject_low 35 ALIGNMENT 0 Y12-9e15.q1k chr13 867 798 168359 168358 C 70 0.00 1297 reject_low 33 ALIGNMENT 61 Y12-9e15.q1k chr05 797 697 431495 431594 C 101 88.12 1297 reject_low 32 ALIGNMENT 0 Y12-9e15.q1k chr08 106 62 133373 133372 C 45 0.00 1297 reject_low 51 ALIGNMENT 54 Y12-9e15.q1k chr03 697 791 85034 85126 F 95 87.37 1297 reject_low 46 ALIGNMENT 46 Y12-9e15.q1k chr05 710 797 354752 354837 F 88 86.36 1297 reject_low 38 ALIGNMENT 0 Y12-9e15.q1k chr05 696 62 431595 431594 C 635 0.00 1297 reject_low 32 ALIGNMENT 0 Y12-9e15.q1k chr13 867 689 808537 808536 C 179 0.00 1297 reject_low 2 ALIGNMENT 89 Y12-9e15.q1k chr01 797 689 165836 165944 C 109 94.50 1297 reject_low 24 ALIGNMENT 0 Y12-9e15.q1k chr04 867 65 513515 513514 C 803 0.00 1297 reject_low 44 ALIGNMENT 82 Y12-9e15.q1k chr01 689 791 183350 183453 F 103 94.17 1297 reject_low 26 ALIGNMENT 0 Y12-9e15.q1k chr09 737 62 197205 197204 C 676 0.00 1297 reject_low 39 ALIGNMENT 0 Y12-9e15.q1k chr05 798 867 62465 62464 F 70 0.00 1297 reject_low 30 ALIGNMENT 0 Y12-9e15.q1k chr03 62 212 84626 84625 F 151 0.00 1297 reject_low 43 ALIGNMENT 0 Y12-9e15.q1k chr05 316 867 354837 354836 F 552 0.00 1297 reject_low 42 ALIGNMENT 216 Y12-9e15.q1k chr01 24 317 189452 189744 F 294 93.54 1297 reject_low 11 ALIGNMENT 245 Y12-9e15.q1k chr12 32 324 946856 947147 F 293 96.93 1297 reject_low 19 ALIGNMENT 304 Y12-9e15.q1k chr16 688 325 442739 443104 C 364 96.15 1297 reject_low 9 ALIGNMENT 268 Y12-9e15.q1k chr05 32 324 62182 62474 F 293 99.32 1297 reject_low 14 ALIGNMENT 0 Y12-9e15.q1k chr08 867 798 91773 91772 C 70 0.00 1297 reject_low 29 ALIGNMENT 0 Y12-9e15.q1k chr12 792 867 947132 947131 F 76 0.00 1297 reject_low 36 ALIGNMENT 310 Y12-9e15.q1k chr09 688 325 196650 197015 C 364 96.70 1297 reject_low 12 ALIGNMENT 0 Y12-9e15.q1k chr14 324 62 632487 632486 C 263 0.00 1297 accept 0 ALIGNMENT 92 Y12-9e15.q1k chr08 317 43 116423 116696 C 275 81.45 1297 reject_low 28 ALIGNMENT 0 Y12-9e15.q1k chr05 867 798 431496 431495 C 70 0.00 1297 reject_low 32 ALIGNMENT 89 Y12-9e15.q1k chr01 797 689 160248 160356 C 109 94.50 1297 reject_low 47 ALIGNMENT 22 Y12-9e15.q1k chr08 152 107 133328 133372 C 46 86.96 1297 reject_low 51 ALIGNMENT 0 Y12-9e15.q1k chr03 315 696 84616 85033 F 382 0.00 1297 reject_low 46 ALIGNMENT 34 Y12-9e15.q1k chr05 201 315 354725 354837 F 115 81.74 1297 reject_low 42 ALIGNMENT 0 Y12-9e15.q1k chr08 867 326 91763 91762 C 542 0.00 1297 reject_low 17 ALIGNMENT 258 Y12-9e15.q1k chr08 325 32 91762 92055 C 294 97.96 1297 reject_low 17 ALIGNMENT 0 Y12-9e15.q1k chr13 324 62 808901 808900 C 263 0.00 1297 reject_low 2 ALIGNMENT 0 Y12-9e15.q1k chr04 867 792 513701 513700 C 76 0.00 1297 reject_low 35 ALIGNMENT 0 Y12-9e15.q1k chr01 792 867 189736 189735 F 76 0.00 1297 reject_low 50 ALIGNMENT 0 Y12-9e15.q1k chr07 691 867 111231 111230 F 177 0.00 1297 reject_low 4 ALIGNMENT 0 Y12-9e15.q1k chr02 867 695 643478 643477 C 173 0.00 1297 reject_low 1 ALIGNMENT 307 Y12-9e15.q1k chr08 325 691 91392 91760 F 367 96.19 1297 reject_low 8 ALIGNMENT 0 Y12-9e15.q1k chr02 324 62 36214 36213 C 263 0.00 1297 reject_low 5 ALIGNMENT 896 Y12-9e15.p1k chr14 15 1128 628270 629415 F 1114 95.87 1372 accept 0 ALIGNMENT 0 Y12-9e15.q1k chr05 867 325 431487 431486 C 543 0.00 1297 reject_low 13 ALIGNMENT 0 Y12-9e15.q1k chr08 696 62 91872 91871 C 635 0.00 1297 reject_low 29 ALIGNMENT 0 Y12-9e15.q1k chr14 867 316 632010 632009 C 552 0.00 1297 reject_low 37 ALIGNMENT 0 Y12-9e15.q1k chr13 867 325 168350 168349 C 543 0.00 1297 reject_low 16 ALIGNMENT 0 Y12-9e15.q1k chr01 867 798 165837 165836 C 70 0.00 1297 reject_low 24 ALIGNMENT 0 Y12-9e15.q1k chr08 696 62 389289 389288 C 635 0.00 1297 reject_low 31 ALIGNMENT 0 Y12-9e15.q1k chr07 696 62 111286 111285 C 635 0.00 1297 reject_low 41 ALIGNMENT 310 Y12-9e15.q1k chr10 325 688 197469 197834 F 364 96.70 1297 reject_low 6 ALIGNMENT 245 Y12-9e15.q1k chr03 32 324 90477 90768 F 293 96.93 1297 reject_low 18 ALIGNMENT 301 Y12-9e15.q1k chr08 325 688 85540 85905 F 364 95.88 1297 reject_low 10 ALIGNMENT 0 Y12-9e15.q1k chr12 62 696 947040 947039 F 635 0.00 1297 reject_low 36 ALIGNMENT 65 Y12-9e15.q1k chr05 697 797 62366 62465 F 101 89.11 1297 reject_low 30 ALIGNMENT 0 Y12-9e15.q1k chr10 138 62 203889 203888 C 77 0.00 1297 reject_low 22 ALIGNMENT 0 Y12-9e15.q1k chr10 62 324 197469 197468 F 263 0.00 1297 reject_low 6 ALIGNMENT 45 Y12-9e15.q1k chr09 797 738 197145 197204 C 60 93.33 1297 reject_low 39 ALIGNMENT 310 Y12-9e15.q1k chr07 325 690 110864 111231 F 366 96.45 1297 reject_low 4 ALIGNMENT 56 Y12-9e15.q1k chr01 43 317 183187 183461 F 275 77.82 1297 reject_low 50 ALIGNMENT 152 Y12-9e15.q1k chr10 324 139 203704 203888 C 186 96.77 1297 reject_low 22 ALIGNMENT 174 Y12-9e15.q1k chr01 328 32 160235 160535 C 297 88.55 1297 reject_low 21 ALIGNMENT 310 Y12-9e15.q1k chr10 325 688 203324 203689 F 364 96.70 1297 reject_low 7 ALIGNMENT 94 Y12-9e15.q1k chr08 43 315 133723 133993 F 273 81.68 1297 reject_low 27 ALIGNMENT 0 Y12-9e15.q1k chr03 325 867 90768 90767 F 543 0.00 1297 reject_low 18 ALIGNMENT 0 Y12-9e15.q1k chr01 318 696 183462 189643 F 379 0.00 1297 reject_low 50 ALIGNMENT 0 Y12-9e15.q1k chr03 792 867 90753 90752 F 76 0.00 1297 reject_low 45 ALIGNMENT 0 Y12-9e15.q1k chr07 867 752 111233 111232 C 116 0.00 1297 reject_low 41 ALIGNMENT 0 Y12-9e15.q1k chr13 696 62 168458 168457 C 635 0.00 1297 reject_low 33 ALIGNMENT 0 Y12-9e15.q1k chr08 316 867 133993 133992 F 552 0.00 1297 reject_low 27 ALIGNMENT 0 Y12-9e15.q1k chr05 62 696 62366 62365 F 635 0.00 1297 reject_low 30 ALIGNMENT 0 Y12-9e15.q1k chr03 792 867 85126 85125 F 76 0.00 1297 reject_low 46 ALIGNMENT 0 Y12-9e15.q1k chr01 867 329 160236 160235 C 539 0.00 1297 reject_low 21 ALIGNMENT 0 Y12-9e15.q1k chr10 62 324 203324 203323 F 263 0.00 1297 reject_low 7 ALIGNMENT 268 Y12-9e15.q1k chr08 324 32 389180 389472 C 293 99.32 1297 reject_low 15 ALIGNMENT 242 Y12-9e15.q1k chr03 32 324 84850 85141 F 293 96.59 1297 reject_low 45 ALIGNMENT 37 Y12-9e15.q1k chr07 751 697 111232 111285 C 55 90.91 1297 reject_low 41 ALIGNMENT 85 Y12-9e15.q1k chr08 689 800 133885 133996 F 112 92.86 1297 reject_low 23 ALIGNMENT 0 Y12-9e15.q1k chr08 867 798 116426 116425 C 70 0.00 1297 reject_low 25 ALIGNMENT 0 Y12-9e15.q1k chr08 867 325 389181 389180 C 543 0.00 1297 reject_low 15 ALIGNMENT 138 Y12-9e15.q1k chr03 62 217 84138 84293 F 156 99.36 1297 reject_low 48 ALIGNMENT 0 Y12-9e15.q1k chr10 867 798 203714 203713 C 70 0.00 1297 reject_low 34 ALIGNMENT 0 Y12-9e15.q1k chr01 688 62 165945 165944 C 627 0.00 1297 reject_low 24 ALIGNMENT 0 Y12-9e15.q1k chr04 867 315 513696 513695 C 553 0.00 1297 reject_low 20 ALIGNMENT 0 Y12-9e15.q1k chr14 215 62 632110 632109 C 154 0.00 1297 reject_low 37 ALIGNMENT 271 Y12-9e15.q1k chr05 324 32 431486 431778 C 293 99.66 1297 reject_low 13 ALIGNMENT 30 Y12-9e15.q1k chr07 324 268 110802 110858 C 57 87.72 1297|0,3 reject_low 49 ALIGNMENT 171 Y12-9e15.q1k chr01 317 32 165834 166123 C 286 89.16 1297 reject_low 47 ALIGNMENT 0 Y12-9e15.q1k chr05 62 709 354752 354751 F 648 0.00 1297 reject_low 38 ALIGNMENT 249 Y12-9e15.q1k chr04 314 32 513695 513976 C 283 98.59 1297 reject_low 20 ALIGNMENT 0 Y12-9e15.q1k chr03 325 696 85142 90660 F 372 0.00 1297 reject_low 45 ALIGNMENT 0 Y12-9e15.q1k chr16 324 62 443105 443104 C 263 0.00 1297 reject_low 9 ALIGNMENT 237 Y12-9e15.q1k chr03 32 314 84334 84615 F 283 97.17 1297 reject_low 46 ALIGNMENT 60 Y12-9e15.q1k chr10 797 697 203713 203811 C 101 88.12 1297 reject_low 34 ALIGNMENT 0 Y12-9e15.q1k chr04 696 62 513793 513792 C 635 0.00 1297 reject_low 35 ALIGNMENT 0 Y12-9e15.q1k chr08 867 798 389190 389189 C 70 0.00 1297 reject_low 31 ALIGNMENT 54 Y12-9e15.q1k chr12 697 791 947040 947132 F 95 87.37 1297 reject_low 36 ALIGNMENT 0 Y12-9e15.q1k chr01 688 318 160357 165833 C 371 0.00 1297 reject_low 47 ALIGNMENT 0 Y12-9e15.q1k chr03 218 696 84294 84517 F 479 0.00 1297 reject_low 48 ALIGNMENT 0 Y12-9e15.q1k chr01 867 798 160249 160248 C 70 0.00 1297 reject_low 47 ALIGNMENT 0 Y12-9e15.q1k chr12 325 867 947147 947146 F 543 0.00 1297 reject_low 19 ALIGNMENT 0 Y12-9e15.q1k chr05 62 200 354725 354724 F 139 0.00 1297 reject_low 42 ALIGNMENT 954 Y12-9e16.q1k chr02 28 1114 552986 554084 F 1087 97.24 1264 accept 0 ALIGNMENT 1046 Y12-9e16.p1k chr02 1237 17 555836 557067 C 1221 96.31 1415 accept 0 ALIGNMENT 1042 Y12-9e18.p1k chr13 27 1219 642910 644114 F 1193 96.90 1397 accept 0 ALIGNMENT 967 Y12-9e18.q1k chr13 1241 31 646208 647432 C 1211 94.72 1246 accept 0 ALIGNMENT 999 Y12-9e19.q1k chr04 37 1188 302347 303520 F 1152 96.44 1256 accept 0 ALIGNMENT 132 Y12-9e19.p1k chr13 810 1035 552493 552730 F 226 87.17 1310 reject_low 1 ALIGNMENT 0 Y12-9e19.p1k chr13 62 809 552493 552492 F 748 0.00 1310 reject_low 1 ALIGNMENT 908 Y12-9e19.p1k chr04 1071 28 307054 308118 C 1044 96.65 1310 accept 0 ALIGNMENT 1050 Y12-9e20.p1k chr12 20 1234 394682 395915 F 1215 97.04 1350 accept 0 ALIGNMENT 1035 Y12-9e20.q1k chr12 1218 37 398875 400057 C 1182 96.53 1299 accept 0 ALIGNMENT 861 Y12-9e22.q1k chr04 1043 32 130549 131542 C 1012 96.94 1262 accept 0 ALIGNMENT 1042 Y12-9e22.p1k chr04 20 1234 127218 128433 F 1215 96.38 1330 accept 0 ALIGNMENT 964 Y12-9e23.p1k chr05 1146 20 378639 379787 C 1127 96.36 1327 accept 0 ALIGNMENT 955 Y12-9e23.q1k chr05 33 1122 375380 376460 F 1090 96.97 1183 accept 0 ALIGNMENT 562 Y12-9e24.q1k chr12 1017 78 1064229 1065153 C 940 91.60 1228 reject_low 2 ALIGNMENT 237 Y12-9e24.q1k chr11 956 29 665548 666454 C 928 81.90 1228 reject_low 18 ALIGNMENT 0 Y12-9e24.q1k chr14 766 200 784243 784242 C 567 0.00 1228 reject_low 23 ALIGNMENT 0 Y12-9e24.q1k chr13 62 153 5537 5536 F 92 0.00 1228 reject_low 10 ALIGNMENT 24 Y12-9e24.q1k chr03 61 202 5 149 F 142 92.25 1228 reject_low 21 ALIGNMENT 0 Y12-9e24.q1k chr12 77 62 1065154 1065153 C 16 0.00 1228 reject_low 2 ALIGNMENT 0 Y12-9e24.q1k chr10 62 409 7225 7224 F 348 0.00 1228 reject_low 15 ALIGNMENT 287 Y12-9e24.q1k chr08 926 77 556141 556985 C 850 83.41 1228 reject_low 17 ALIGNMENT 366 Y12-9e24.q1k chr03 13 956 157 1092 F 944 85.81 1228 reject_low 5 ALIGNMENT 22 Y12-9e24.q1k chr14 199 108 784242 784333 C 92 93.48 1228 reject_low 23 ALIGNMENT 0 Y12-9e24.q1k chr04 110 62 1525450 1525449 C 49 0.00 1228 reject_low 14 ALIGNMENT 0 Y12-9e24.q1k chr03 203 766 149 148 F 564 0.00 1228 reject_low 21 ALIGNMENT 389 Y12-9e24.q1k chr04 54 956 4 898 F 903 86.93 1228 reject_low 7 ALIGNMENT 25 Y12-9e24.q1k chr12 13 143 11223 11358 F 131 92.37 1228 reject_low 19 ALIGNMENT 0 Y12-9e24.q1k chr06 284 357 4902 4935 F 74 0.00 1228 reject_low 24 ALIGNMENT 0 Y12-9e24.q1k chr10 97 62 745667 745666 C 36 0.00 1228 reject_low 11 ALIGNMENT 379 Y12-9e24.q1k chr14 140 956 6626 7422 F 817 86.90 1228 reject_low 13 ALIGNMENT 381 Y12-9e24.q1k chr10 956 98 744823 745666 C 859 86.85 1228 reject_low 11 ALIGNMENT 47 Y12-9e24.q1k chr01 775 684 229585 229675 C 92 85.87 1228 reject_low 20 ALIGNMENT 0 Y12-9e24.q1k chr14 62 139 6626 6625 F 78 0.00 1228 reject_low 13 ALIGNMENT 404 Y12-9e24.q1k chr15 105 956 5 841 F 852 87.32 1228 reject_low 8 ALIGNMENT 402 Y12-9e24.q1k chr14 982 13 783260 784218 C 970 86.29 1228 reject_low 3 ALIGNMENT 0 Y12-9e24.q1k chr01 683 62 229676 229675 C 622 0.00 1228 reject_low 20 ALIGNMENT 0 Y12-9e24.p1k chr07 346 62 9896 9895 C 285 0.00 1319 reject_low 1 ALIGNMENT 374 Y12-9e24.q1k chr03 999 107 315746 316616 C 893 85.78 1228 reject_low 6 ALIGNMENT 301 Y12-9e24.q1k chr07 167 929 2 748 F 763 84.80 1228 reject_low 1 ALIGNMENT 274 Y12-9e24.q1k chr06 358 956 4936 5524 F 599 85.98 1228 reject_low 24 ALIGNMENT 331 Y12-9e24.q1k chr12 50 1017 11196 12134 F 968 84.50 1228 reject_low 4 ALIGNMENT 394 Y12-9e24.q1k chr13 154 956 5537 6338 F 803 87.92 1228 reject_low 10 ALIGNMENT 383 Y12-9e24.q1k chr02 956 153 812379 813177 C 804 87.56 1228 reject_low 12 ALIGNMENT 322 Y12-9e24.q1k chr11 140 956 4 802 F 817 85.07 1228 reject_low 16 ALIGNMENT 0 Y12-9e24.q1k chr11 62 139 4 3 F 78 0.00 1228 reject_low 16 ALIGNMENT 0 Y12-9e24.q1k chr09 128 62 439886 439885 C 67 0.00 1228 accept 0 ALIGNMENT 39 Y12-9e24.q1k chr06 65 283 4686 4901 F 219 86.30 1228 reject_low 24 ALIGNMENT 0 Y12-9e24.q1k chr15 62 104 5 4 F 43 0.00 1228 reject_low 8 ALIGNMENT 0 Y12-9e24.q1k chr07 62 166 2 1 F 105 0.00 1228 reject_low 1 ALIGNMENT 0 Y12-9e24.q1k chr02 152 62 813178 813177 C 91 0.00 1228 reject_low 12 ALIGNMENT 138 Y12-9e24.p1k chr07 665 347 9581 9895 C 319 82.45 1319 reject_low 1 ALIGNMENT 0 Y12-9e24.q1k chr14 107 62 784334 784333 C 46 0.00 1228 reject_low 23 ALIGNMENT 21 Y12-9e24.q1k chr08 202 54 562497 562643 C 149 91.95 1228 reject_low 22 ALIGNMENT 0 Y12-9e24.q1k chr08 76 62 556986 556985 C 15 0.00 1228 reject_low 17 ALIGNMENT 0 Y12-9e24.q1k chr03 106 62 316617 316616 C 45 0.00 1228 reject_low 6 ALIGNMENT 993 Y12-9e24.p1k chr09 26 1142 430163 431272 F 1117 97.40 1319 accept 0 ALIGNMENT 367 Y12-9e24.q1k chr04 961 111 1524609 1525449 C 851 86.37 1228 reject_low 14 ALIGNMENT 327 Y12-9e24.q1k chr10 410 982 7225 7785 F 573 89.35 1228 reject_low 15 ALIGNMENT 391 Y12-9e24.q1k chr09 929 129 439098 439885 C 801 87.52 1228 accept 0 ALIGNMENT 0 Y12-9e24.q1k chr12 144 766 11358 11357 F 623 0.00 1228 reject_low 19 ALIGNMENT 0 Y12-9e24.p1k chr07 809 666 9582 9581 C 144 0.00 1319 reject_low 1 ALIGNMENT 388 Y12-9e24.q1k chr13 927 70 923573 924428 C 858 87.06 1228 reject_low 9 ALIGNMENT 0 Y12-9e24.q1k chr08 766 203 562498 562497 C 564 0.00 1228 reject_low 22 ALIGNMENT 1072 Y12-9f01.p1k chr15 1262 21 38985 40219 C 1242 96.78 1418 accept 0 ALIGNMENT 968 Y12-9f01.q1k chr15 32 1155 36099 37238 F 1124 97.15 1329 accept 0 ALIGNMENT 916 Y12-9f02.q1k chr02 1117 26 169393 170515 C 1092 96.06 1316 accept 0 ALIGNMENT 975 Y12-9f02.p1k chr02 17 1177 165657 166827 F 1161 96.64 1377 accept 0 ALIGNMENT 1007 Y12-9f03.q1k chr03 1181 40 160713 161865 C 1142 97.02 1317 accept 0 ALIGNMENT 1031 Y12-9f03.p1k chr03 19 1245 156505 157741 F 1227 95.68 1419 accept 0 ALIGNMENT 896 Y12-9f04.q1k chr10 1067 27 102552 103607 C 1041 96.93 1268 accept 0 ALIGNMENT 872 Y12-9f04.p1k chr10 21 1176 99209 100357 F 1156 94.38 1481 accept 0 ALIGNMENT 0 Y12-9f05.q1k chr02 62 390 780436 780435 F 329 0.00 1382 reject_low 2 ALIGNMENT 980 Y12-9f05.q1k chr08 36 1236 51665 52862 F 1201 94.84 1382 accept 0 ALIGNMENT 21 Y12-9f05.q1k chr05 417 391 377453 377479 C 27 100.00 1382 reject_low 1 ALIGNMENT 0 Y12-9f05.q1k chr05 390 62 377480 377479 C 329 0.00 1382 reject_low 1 ALIGNMENT 20 Y12-9f05.q1k chr02 391 419 780436 780464 F 29 96.55 1382 reject_low 2 ALIGNMENT 1093 Y12-9f05.p1k chr08 1275 19 54833 56095 C 1257 96.02 1438 accept 0 ALIGNMENT 0 Y12-9f05.q1k chr02 420 895 780464 780463 F 476 0.00 1382 reject_low 2 ALIGNMENT 0 Y12-9f05.q1k chr05 895 418 377454 377453 C 478 0.00 1382 reject_low 1 ALIGNMENT 1003 Y12-9f06.p1k chr15 1164 18 821523 822684 C 1147 97.82 1398 accept 0 ALIGNMENT 950 Y12-9f06.q1k chr15 34 1124 817131 818237 F 1091 97.07 1336 accept 0 ALIGNMENT 0 Y12-9f07.q1k chr13 895 672 175723 175722 C 224 0.00 1305 reject_low 1 ALIGNMENT 640 Y12-9f07.q1k chr13 1125 312 175256 176096 C 814 94.23 1305 accept 0 ALIGNMENT 1041 Y12-9f07.p1k chr13 21 1229 172190 173414 F 1209 96.53 1396 accept 0 ALIGNMENT 558 Y12-9f07.q1k chr13 671 35 175722 176373 C 637 97.02 1305 reject_low 1 ALIGNMENT 0 Y12-9f07.q1k chr13 311 62 176097 176096 C 250 0.00 1305 accept 0 ALIGNMENT 841 Y12-9f08.p1k chr10 1051 17 639509 640576 C 1035 94.59 1349 accept 0 ALIGNMENT 939 Y12-9f08.q1k chr10 36 1151 635353 636473 F 1116 95.97 1321 accept 0 ALIGNMENT 21 Y12-9f08.p1k chr02 671 636 650243 650278 C 36 94.44 1349 reject_low 3 ALIGNMENT 0 Y12-9f08.p1k chr02 635 62 650279 650278 C 574 0.00 1349 reject_low 3 ALIGNMENT 0 Y12-9f08.p1k chr02 62 636 353613 353612 F 575 0.00 1349 reject_low 1 ALIGNMENT 22 Y12-9f08.p1k chr15 646 674 301294 301322 F 29 100.00 1349 reject_low 4 ALIGNMENT 0 Y12-9f08.p1k chr15 62 645 301294 301293 F 584 0.00 1349 reject_low 4 ALIGNMENT 0 Y12-9f08.p1k chr02 849 672 650244 650243 C 178 0.00 1349 reject_low 3 ALIGNMENT 25 Y12-9f08.p1k chr01 673 641 31490 31522 C 33 100.00 1349 reject_low 2 ALIGNMENT 0 Y12-9f08.p1k chr01 640 62 31523 31522 C 579 0.00 1349 reject_low 2 ALIGNMENT 28 Y12-9f08.p1k chr02 637 673 353613 353649 F 37 100.00 1349 reject_low 1 ALIGNMENT 0 Y12-9f08.p1k chr02 674 849 353649 353648 F 176 0.00 1349 reject_low 1 ALIGNMENT 0 Y12-9f08.p1k chr01 849 674 31491 31490 C 176 0.00 1349 reject_low 2 ALIGNMENT 0 Y12-9f08.p1k chr15 675 849 301322 301321 F 175 0.00 1349 reject_low 4 ALIGNMENT 0 Y12-9f09.p1k chr02 210 62 801722 801721 C 149 0.00 1422 accept 0 ALIGNMENT 0 Y12-9f09.p1k chr16 921 902 931886 931885 C 20 0.00 1422 reject_low 1 ALIGNMENT 0 Y12-9f09.p1k chr07 391 62 1071338 1071337 C 330 0.00 1422 reject_low 2 ALIGNMENT 0 Y12-9f09.p1k chr07 921 850 1070881 1070880 C 72 0.00 1422 reject_low 2 ALIGNMENT 0 Y12-9f09.p1k chr16 231 62 932562 932561 C 170 0.00 1422 reject_low 1 ALIGNMENT 920 Y12-9f09.q1k chr02 28 1089 796906 797983 F 1062 96.52 1279 accept 0 ALIGNMENT 791 Y12-9f09.p1k chr02 1215 211 800699 801721 C 1005 93.83 1422 accept 0 ALIGNMENT 145 Y12-9f09.p1k chr16 901 232 931885 932561 C 670 74.78 1422 reject_low 1 ALIGNMENT 140 Y12-9f09.p1k chr07 849 392 1070880 1071337 C 458 77.29 1422 reject_low 2 ALIGNMENT 1073 Y12-9f11.q1k chr07 1249 32 511153 512371 C 1218 96.72 1317 accept 0 ALIGNMENT 929 Y12-9f11.p1k chr07 19 1168 508553 509726 F 1150 95.83 1358 accept 0 ALIGNMENT 999 Y12-9f12.p1k chr16 1169 18 486353 487523 C 1152 97.22 1387 accept_chi 0 ALIGNMENT 879 Y12-9f12.q1k chr11 1082 36 490728 491783 C 1047 96.18 1267 accept_chi 1 ALIGNMENT 944 Y12-9f13.p1k chr04 19 1093 542474 543569 F 1075 97.58 1383 accept 0 ALIGNMENT 1069 Y12-9f13.q1k chr04 1212 30 546642 547831 C 1183 97.21 1290 accept 0 ALIGNMENT 20 Y12-9f14.p1k chr04 1127 1194 33360 33425 F 68 82.35 1461 accept_chi 0 ALIGNMENT 795 Y12-9f14.q1k chr02 1104 6 563640 564730 C 1099 91.81 1183 accept_chi 1 ALIGNMENT 918 Y12-9f14.p1k chr04 18 1083 32256 33322 F 1066 96.34 1461 accept_chi 0 ALIGNMENT 0 Y12-9f14.p1k chr04 1084 1126 33323 33359 F 43 0.00 1461 accept_chi 0 ALIGNMENT 983 Y12-9f15.q1k chr16 32 1243 78341 79553 F 1212 95.63 1316 accept 0 ALIGNMENT 1019 Y12-9f15.p1k chr16 1119 20 82142 83252 C 1100 97.91 1354 accept 0 ALIGNMENT 0 Y12-9f16.q1k chr15 637 62 595133 595132 C 576 0.00 1333 reject_low 25 ALIGNMENT 98 Y12-9f16.q1k chr10 153 358 540794 541002 F 206 85.44 1333 reject_low 19 ALIGNMENT 884 Y12-9f16.q1k chr16 26 1206 776070 777251 F 1181 94.07 1333 accept 0 ALIGNMENT 0 Y12-9f16.q1k chr05 62 637 443413 443412 F 576 0.00 1333 reject_low 21 ALIGNMENT 38 Y12-9f16.q1k chr02 747 638 259777 259887 C 110 80.91 1333 reject_low 20 ALIGNMENT 85 Y12-9f16.q1k chr13 133 346 202013 202235 F 214 83.64 1333 reject_low 29 ALIGNMENT 0 Y12-9f16.q1k chr02 62 152 259691 259690 F 91 0.00 1333 reject_low 16 ALIGNMENT 0 Y12-9f16.q1k chr14 62 617 102192 102191 F 556 0.00 1333 reject_low 7 ALIGNMENT 960 Y12-9f16.p1k chr16 1077 25 781593 782648 C 1053 98.39 1405 accept 0 ALIGNMENT 88 Y12-9f16.q1k chr10 153 345 472492 472693 F 193 84.97 1333 reject_low 32 ALIGNMENT 97 Y12-9f16.q1k chr03 42 346 149475 149787 F 305 80.98 1333 reject_low 2 ALIGNMENT 0 Y12-9f16.q1k chr01 817 362 160245 160244 C 456 0.00 1333 reject_low 14 ALIGNMENT 0 Y12-9f16.q1k chr03 817 310 142804 142803 C 508 0.00 1333 reject_low 37 ALIGNMENT 0 Y12-9f16.q1k chr13 652 62 202221 202220 C 591 0.00 1333 reject_low 26 ALIGNMENT 41 Y12-9f16.q1k chr01 618 747 160239 160369 F 130 80.00 1333 reject_low 4 ALIGNMENT 0 Y12-9f16.q1k chr16 817 748 560680 560679 C 70 0.00 1333 reject_low 8 ALIGNMENT 0 Y12-9f16.q1k chr02 62 152 226739 226738 F 91 0.00 1333 reject_low 15 ALIGNMENT 0 Y12-9f16.q1k chr02 346 817 226934 226933 F 472 0.00 1333 reject_low 15 ALIGNMENT 93 Y12-9f16.q1k chr05 361 133 443398 443635 C 229 83.84 1333 reject_low 11 ALIGNMENT 0 Y12-9f16.q1k chr02 738 817 258784 258783 F 80 0.00 1333 reject_low 38 ALIGNMENT 35 Y12-9f16.q1k chr10 744 628 540883 541000 C 117 79.49 1333 reject_low 27 ALIGNMENT 32 Y12-9f16.q1k chr03 153 219 151632 151700 F 67 88.06 1333 reject_low 42 ALIGNMENT 41 Y12-9f16.q1k chr10 747 618 472584 472714 C 130 80.00 1333 reject_low 5 ALIGNMENT 0 Y12-9f16.q1k chr01 132 62 160482 160481 C 71 0.00 1333 reject_low 14 ALIGNMENT 0 Y12-9f16.q1k chr05 817 362 443399 443398 C 456 0.00 1333 reject_low 11 ALIGNMENT 37 Y12-9f16.q1k chr13 747 653 202125 202220 C 95 82.11 1333 reject_low 26 ALIGNMENT 0 Y12-9f16.q1k chr10 346 817 472693 472692 F 472 0.00 1333 reject_low 32 ALIGNMENT 101 Y12-9f16.q1k chr16 153 361 560593 560804 F 209 85.65 1333 reject_low 12 ALIGNMENT 171 Y12-9f16.p1k chr16 1241 663 777003 777562 C 579 81.00 1405 reject_low 1 ALIGNMENT 0 Y12-9f16.q1k chr03 62 152 151632 151631 F 91 0.00 1333 reject_low 42 ALIGNMENT 0 Y12-9f16.q1k chr12 122 132 688448 688467 F 11 0.00 1333 reject_low 44 ALIGNMENT 0 Y12-9f16.q1k chr10 359 817 541002 541001 F 459 0.00 1333 reject_low 19 ALIGNMENT 0 Y12-9f16.q1k chr16 616 62 560811 560810 C 555 0.00 1333 reject_low 8 ALIGNMENT 66 Y12-9f16.q1k chr03 309 153 142803 142962 C 157 84.08 1333 reject_low 37 ALIGNMENT 104 Y12-9f16.q1k chr13 345 153 362607 362802 C 193 87.56 1333 reject_low 18 ALIGNMENT 38 Y12-9f16.q1k chr05 638 747 443413 443523 F 110 80.91 1333 reject_low 21 ALIGNMENT 38 Y12-9f16.q1k chr15 747 638 595022 595132 C 110 80.91 1333 reject_low 25 ALIGNMENT 0 Y12-9f16.q1k chr10 62 132 478059 478058 F 71 0.00 1333 reject_low 40 ALIGNMENT 0 Y12-9f16.q1k chr14 748 817 102322 102321 F 70 0.00 1333 reject_low 7 ALIGNMENT 0 Y12-9f16.q1k chr10 346 817 478277 478276 F 472 0.00 1333 reject_low 40 ALIGNMENT 0 Y12-9f16.q1k chr12 346 817 651138 651137 F 472 0.00 1333 reject_low 39 ALIGNMENT 0 Y12-9f16.q1k chr13 152 62 372919 372918 C 91 0.00 1333 reject_low 35 ALIGNMENT 104 Y12-9f16.q1k chr13 345 153 357025 357220 C 193 87.56 1333 reject_low 17 ALIGNMENT 0 Y12-9f16.q1k chr03 152 62 124348 124347 C 91 0.00 1333 reject_low 28 ALIGNMENT 0 Y12-9f16.q1k chr16 62 152 560593 560592 F 91 0.00 1333 reject_low 12 ALIGNMENT 27 Y12-9f16.q1k chr09 197 153 197325 197371 C 45 91.11 1333 reject_low 46 ALIGNMENT 88 Y12-9f16.q1k chr12 345 153 215102 215303 C 193 84.97 1333 reject_low 34 ALIGNMENT 88 Y12-9f16.q1k chr15 153 361 117817 118034 F 209 83.73 1333 reject_low 31 ALIGNMENT 0 Y12-9f16.q1k chr12 62 637 215101 215100 F 576 0.00 1333 reject_low 22 ALIGNMENT 0 Y12-9f16.q1k chr14 817 362 102198 102197 C 456 0.00 1333 reject_low 10 ALIGNMENT 0 Y12-9f16.q1k chr09 817 362 197142 197141 C 456 0.00 1333 reject_low 46 ALIGNMENT 73 Y12-9f16.q1k chr09 361 198 197141 197307 C 164 84.76 1333 reject_low 46 ALIGNMENT 0 Y12-9f16.q1k chr14 62 615 96608 96607 F 554 0.00 1333 reject_low 3 ALIGNMENT 0 Y12-9f16.p1k chr16 662 62 777563 777562 C 601 0.00 1405 reject_low 1 ALIGNMENT 0 Y12-9f16.q1k chr03 817 362 124137 124136 C 456 0.00 1333 reject_low 28 ALIGNMENT 0 Y12-9f16.q1k chr02 637 62 259888 259887 C 576 0.00 1333 reject_low 20 ALIGNMENT 0 Y12-9f16.q1k chr02 346 817 259886 259885 F 472 0.00 1333 reject_low 16 ALIGNMENT 28 Y12-9f16.q1k chr03 332 293 151476 151515 C 40 92.50 1333 reject_low 43 ALIGNMENT 0 Y12-9f16.q1k chr09 197 198 197308 197324 C 0 0.00 1333 reject_low 46 ALIGNMENT 41 Y12-9f16.q1k chr10 747 618 483756 483886 C 130 80.00 1333 reject_low 6 ALIGNMENT 0 Y12-9f16.q1k chr15 817 748 595023 595022 C 70 0.00 1333 reject_low 25 ALIGNMENT 0 Y12-9f16.q1k chr10 817 748 472585 472584 C 70 0.00 1333 reject_low 5 ALIGNMENT 0 Y12-9f16.q1k chr15 62 152 117817 117816 F 91 0.00 1333 reject_low 31 ALIGNMENT 0 Y12-9f16.q1k chr16 232 62 804776 804775 C 171 0.00 1333 reject_low 41 ALIGNMENT 104 Y12-9f16.q1k chr02 153 345 259691 259886 F 193 87.56 1333 reject_low 16 ALIGNMENT 0 Y12-9f16.q1k chr12 817 346 215103 215102 C 472 0.00 1333 reject_low 34 ALIGNMENT 48 Y12-9f16.q1k chr02 350 222 258681 258810 C 129 82.17 1333 reject_low 45 ALIGNMENT 0 Y12-9f16.q1k chr03 292 62 151516 151515 C 231 0.00 1333 reject_low 43 ALIGNMENT 0 Y12-9f16.q1k chr12 152 62 215304 215303 C 91 0.00 1333 reject_low 34 ALIGNMENT 45 Y12-9f16.q1k chr10 133 345 478059 478277 F 213 77.93 1333 reject_low 40 ALIGNMENT 0 Y12-9f16.q1k chr10 627 62 541001 541000 C 566 0.00 1333 reject_low 27 ALIGNMENT 0 Y12-9f16.q1k chr01 748 817 160369 160368 F 70 0.00 1333 reject_low 4 ALIGNMENT 0 Y12-9f16.q1k chr13 817 748 202126 202125 C 70 0.00 1333 reject_low 26 ALIGNMENT 0 Y12-9f16.q1k chr02 62 637 258685 258684 F 576 0.00 1333 reject_low 38 ALIGNMENT 0 Y12-9f16.q1k chr13 817 346 357026 357025 C 472 0.00 1333 reject_low 17 ALIGNMENT 87 Y12-9f16.q1k chr01 361 133 160244 160481 C 229 82.97 1333 reject_low 14 ALIGNMENT 0 Y12-9f16.q1k chr06 817 346 161820 161819 C 472 0.00 1333 reject_low 30 ALIGNMENT 0 Y12-9f16.q1k chr02 221 121 258811 258904 C 101 0.00 1333 reject_low 45 ALIGNMENT 0 Y12-9f16.q1k chr10 617 62 472715 472714 C 556 0.00 1333 reject_low 5 ALIGNMENT 0 Y12-9f16.q1k chr15 362 817 118034 118033 F 456 0.00 1333 reject_low 31 ALIGNMENT 88 Y12-9f16.q1k chr10 153 345 483664 483865 F 193 84.97 1333 reject_low 33 ALIGNMENT 0 Y12-9f16.q1k chr15 637 62 118020 118019 C 576 0.00 1333 reject_low 24 ALIGNMENT 0 Y12-9f16.q1k chr15 346 817 595131 595130 F 472 0.00 1333 reject_low 13 ALIGNMENT 0 Y12-9f16.q1k chr09 152 62 197372 197371 C 91 0.00 1333 reject_low 46 ALIGNMENT 0 Y12-9f16.q1k chr13 62 637 372716 372715 F 576 0.00 1333 reject_low 23 ALIGNMENT 81 Y12-9f16.q1k chr16 202 352 804495 804641 F 151 88.74 1333 reject_low 36 ALIGNMENT 0 Y12-9f16.q1k chr10 62 152 540794 540793 F 91 0.00 1333 reject_low 19 ALIGNMENT 0 Y12-9f16.q1k chr03 152 62 142963 142962 C 91 0.00 1333 reject_low 37 ALIGNMENT 0 Y12-9f16.q1k chr14 152 62 96827 96826 C 91 0.00 1333 reject_low 9 ALIGNMENT 0 Y12-9f16.q1k chr12 62 132 650920 650919 F 71 0.00 1333 reject_low 39 ALIGNMENT 0 Y12-9f16.q1k chr05 132 62 443636 443635 C 71 0.00 1333 reject_low 11 ALIGNMENT 0 Y12-9f16.q1k chr14 817 362 96616 96615 C 456 0.00 1333 reject_low 9 ALIGNMENT 0 Y12-9f16.q1k chr16 362 817 560804 560803 F 456 0.00 1333 reject_low 12 ALIGNMENT 62 Y12-9f16.q1k chr12 133 291 688468 688628 F 159 83.65 1333 reject_low 44 ALIGNMENT 107 Y12-9f16.q1k chr14 361 153 96615 96826 C 209 86.60 1333 reject_low 9 ALIGNMENT 0 Y12-9f16.q1k chr03 220 817 151700 151699 F 598 0.00 1333 reject_low 42 ALIGNMENT 0 Y12-9f16.q1k chr10 346 817 483865 483864 F 472 0.00 1333 reject_low 33 ALIGNMENT 38 Y12-9f16.q1k chr15 747 638 117909 118019 C 110 80.91 1333 reject_low 24 ALIGNMENT 92 Y12-9f16.q1k chr03 361 153 124136 124347 C 209 84.21 1333 reject_low 28 ALIGNMENT 107 Y12-9f16.q1k chr14 361 153 102197 102408 C 209 86.60 1333 reject_low 10 ALIGNMENT 24 Y12-9f16.q1k chr02 638 737 258685 258784 F 100 77.00 1333 reject_low 38 ALIGNMENT 0 Y12-9f16.q1k chr06 152 62 162015 162014 C 91 0.00 1333 reject_low 30 ALIGNMENT 39 Y12-9f16.q1k chr16 747 617 560679 560810 C 131 79.39 1333 reject_low 8 ALIGNMENT 0 Y12-9f16.q1k chr03 817 333 151477 151476 C 485 0.00 1333 reject_low 43 ALIGNMENT 0 Y12-9f16.q1k chr13 62 132 202013 202012 F 71 0.00 1333 reject_low 29 ALIGNMENT 47 Y12-9f16.q1k chr12 133 345 650920 651138 F 213 77.46 1333 reject_low 39 ALIGNMENT 0 Y12-9f16.q1k chr10 817 748 483757 483756 C 70 0.00 1333 reject_low 6 ALIGNMENT 0 Y12-9f16.q1k chr13 817 346 362608 362607 C 472 0.00 1333 reject_low 18 ALIGNMENT 0 Y12-9f16.q1k chr12 292 817 688628 688627 F 526 0.00 1333 reject_low 44 ALIGNMENT 0 Y12-9f16.q1k chr15 62 152 594936 594935 F 91 0.00 1333 reject_low 13 ALIGNMENT 0 Y12-9f16.q1k chr05 748 817 443523 443522 F 70 0.00 1333 reject_low 21 ALIGNMENT 95 Y12-9f16.q1k chr06 345 153 161819 162014 C 193 86.01 1333 reject_low 30 ALIGNMENT 0 Y12-9f16.q1k chr12 748 817 215211 215210 F 70 0.00 1333 reject_low 22 ALIGNMENT 88 Y12-9f16.q1k chr13 345 153 372717 372918 C 193 84.97 1333 reject_low 35 ALIGNMENT 42 Y12-9f16.q1k chr14 616 747 96608 96740 F 132 80.30 1333 reject_low 3 ALIGNMENT 107 Y12-9f16.q1k chr15 153 345 594936 595131 F 193 88.08 1333 reject_low 13 ALIGNMENT 0 Y12-9f16.q1k chr13 347 817 202235 202234 F 471 0.00 1333 reject_low 29 ALIGNMENT 0 Y12-9f16.q1k chr10 817 745 540884 540883 C 73 0.00 1333 reject_low 27 ALIGNMENT 38 Y12-9f16.q1k chr13 638 747 372716 372826 F 110 80.91 1333 reject_low 23 ALIGNMENT 0 Y12-9f16.q1k chr14 748 817 96740 96739 F 70 0.00 1333 reject_low 3 ALIGNMENT 27 Y12-9f16.q1k chr12 45 121 688370 688447 F 77 80.52 1333 reject_low 44 ALIGNMENT 0 Y12-9f16.q1k chr16 62 201 804495 804494 F 140 0.00 1333 reject_low 36 ALIGNMENT 0 Y12-9f16.q1k chr10 62 152 472492 472491 F 91 0.00 1333 reject_low 32 ALIGNMENT 0 Y12-9f16.q1k chr10 62 152 483664 483663 F 91 0.00 1333 reject_low 33 ALIGNMENT 0 Y12-9f16.q1k chr02 817 748 259778 259777 C 70 0.00 1333 reject_low 20 ALIGNMENT 38 Y12-9f16.q1k chr12 638 747 215101 215211 F 110 80.91 1333 reject_low 22 ALIGNMENT 0 Y12-9f16.q1k chr16 817 362 804647 804646 C 456 0.00 1333 reject_low 41 ALIGNMENT 0 Y12-9f16.q1k chr13 152 62 362803 362802 C 91 0.00 1333 reject_low 18 ALIGNMENT 0 Y12-9f16.q1k chr01 62 617 160239 160238 F 556 0.00 1333 reject_low 4 ALIGNMENT 41 Y12-9f16.q1k chr14 618 747 102192 102322 F 130 80.00 1333 reject_low 7 ALIGNMENT 0 Y12-9f16.q1k chr13 748 817 372826 372825 F 70 0.00 1333 reject_low 23 ALIGNMENT 0 Y12-9f16.q1k chr10 617 62 483887 483886 C 556 0.00 1333 reject_low 6 ALIGNMENT 0 Y12-9f16.q1k chr14 152 62 102409 102408 C 91 0.00 1333 reject_low 10 ALIGNMENT 0 Y12-9f16.q1k chr02 817 351 258682 258681 C 467 0.00 1333 reject_low 45 ALIGNMENT 0 Y12-9f16.q1k chr13 152 62 357221 357220 C 91 0.00 1333 reject_low 17 ALIGNMENT 46 Y12-9f16.q1k chr16 361 233 804646 804775 C 129 81.40 1333 reject_low 41 ALIGNMENT 0 Y12-9f16.q1k chr16 353 817 804641 804640 F 465 0.00 1333 reject_low 36 ALIGNMENT 0 Y12-9f16.q1k chr13 817 346 372718 372717 C 472 0.00 1333 reject_low 35 ALIGNMENT 104 Y12-9f16.q1k chr02 153 345 226739 226934 F 193 87.56 1333 reject_low 15 ALIGNMENT 28 Y12-9f16.q1k chr02 120 45 258905 258975 C 76 82.89 1333 reject_low 45 ALIGNMENT 0 Y12-9f16.q1k chr03 347 817 149787 149786 F 471 0.00 1333 reject_low 2 ALIGNMENT 0 Y12-9f16.q1k chr15 817 748 117910 117909 C 70 0.00 1333 reject_low 24 ALIGNMENT 994 Y12-9f17.p1k chr07 1221 17 691807 693032 C 1205 95.35 1422 accept 0 ALIGNMENT 1031 Y12-9f17.q1k chr07 33 1239 688765 689968 F 1207 96.02 1264 accept 0 ALIGNMENT 967 Y12-9f18.p1k chr16 1119 20 620405 621516 C 1100 97.27 1398 accept 0 ALIGNMENT 995 Y12-9f18.q1k chr16 31 1254 615097 616309 F 1224 95.02 1262 accept 0 ALIGNMENT 1016 Y12-9f19.p1k chr03 19 1202 57483 58662 F 1184 96.37 1376 accept 0 ALIGNMENT 20 Y12-9f19.q1k chr08 873 897 504372 504396 F 25 100.00 1289 reject_low 1 ALIGNMENT 1024 Y12-9f19.q1k chr03 1201 31 60464 61635 C 1171 96.67 1289 accept 0 ALIGNMENT 0 Y12-9f19.q1k chr08 62 872 504372 504371 F 811 0.00 1289 reject_low 1 ALIGNMENT 938 Y12-9f20.p1k chr16 1148 24 485503 486643 C 1125 96.27 1320 accept 0 ALIGNMENT 1096 Y12-9f20.q1k chr16 34 1266 481362 482592 F 1233 97.08 1295 accept 0 ALIGNMENT 0 Y12-9f20.q1k chr04 847 572 963406 963405 C 276 0.00 1295 reject_low 1 ALIGNMENT 36 Y12-9f20.q1k chr04 571 482 963405 963494 C 90 82.22 1295 reject_low 1 ALIGNMENT 22 Y12-9f20.q1k chr04 408 374 963568 963602 C 35 88.57 1295 reject_low 1 ALIGNMENT 0 Y12-9f20.q1k chr04 481 409 963495 963567 C 73 0.00 1295 reject_low 1 ALIGNMENT 0 Y12-9f20.q1k chr04 373 62 963603 963602 C 312 0.00 1295 reject_low 1 ALIGNMENT 0 Y12-9f21.p1k chr08 62 79 62753 62752 F 18 0.00 1342 reject_low 2 ALIGNMENT 0 Y12-9f21.p1k chr07 79 62 110701 110700 C 18 0.00 1342 reject_low 1 ALIGNMENT 75 Y12-9f21.p1k chr11 155 80 313042 313117 C 76 100.00 1342 reject_low 4 ALIGNMENT 532 Y12-9f21.q1k chr07 972 31 323513 324449 C 942 87.79 1276 accept 0 ALIGNMENT 0 Y12-9f21.p1k chr11 79 62 313118 313117 C 18 0.00 1342 reject_low 4 ALIGNMENT 0 Y12-9f21.p1k chr05 157 835 207432 207431 F 679 0.00 1342 reject_low 6 ALIGNMENT 0 Y12-9f21.p1k chr07 835 159 110623 110622 C 677 0.00 1342 reject_low 1 ALIGNMENT 75 Y12-9f21.p1k chr05 155 80 434533 434608 C 76 100.00 1342 reject_low 3 ALIGNMENT 0 Y12-9f21.p1k chr05 835 156 434534 434533 C 680 0.00 1342 reject_low 3 ALIGNMENT 0 Y12-9f21.p1k chr05 62 79 207356 207355 F 18 0.00 1342 reject_low 6 ALIGNMENT 0 Y12-9f21.p1k chr13 62 79 363063 363062 F 18 0.00 1342 reject_low 5 ALIGNMENT 0 Y12-9f21.p1k chr11 835 156 313043 313042 C 680 0.00 1342 reject_low 4 ALIGNMENT 75 Y12-9f21.p1k chr08 80 158 62753 62831 F 79 98.73 1342 reject_low 2 ALIGNMENT 0 Y12-9f21.p1k chr08 159 835 62831 62830 F 677 0.00 1342 reject_low 2 ALIGNMENT 75 Y12-9f21.p1k chr13 80 155 363063 363138 F 76 100.00 1342 reject_low 5 ALIGNMENT 73 Y12-9f21.p1k chr05 80 156 207356 207432 F 77 98.70 1342 reject_low 6 ALIGNMENT 0 Y12-9f21.p1k chr05 79 62 434609 434608 C 18 0.00 1342 reject_low 3 ALIGNMENT 0 Y12-9f21.p1k chr13 156 835 363138 363137 F 680 0.00 1342 reject_low 5 ALIGNMENT 953 Y12-9f21.p1k chr07 62 1231 319766 320940 F 1170 95.21 1342 accept 0 ALIGNMENT 75 Y12-9f21.p1k chr07 158 80 110622 110700 C 79 98.73 1342 reject_low 1 ALIGNMENT 0 Y12-9f22.q1k chr12 397 824 1011176 1011175 F 428 0.00 1198 reject_low 1 ALIGNMENT 21 Y12-9f22.q1k chr12 375 396 1011155 1011176 F 22 100.00 1198 reject_low 1 ALIGNMENT 1036 Y12-9f22.p1k chr12 21 1308 1007242 1008534 F 1288 95.42 1347 accept 0 ALIGNMENT 0 Y12-9f22.q1k chr12 62 374 1011155 1011154 F 313 0.00 1198 reject_low 1 ALIGNMENT 997 Y12-9f22.q1k chr12 1112 31 1010437 1011520 C 1082 97.87 1198 accept 0 ALIGNMENT 970 Y12-9f23.p1k chr10 1226 17 536093 537289 C 1210 95.70 1369 accept 0 ALIGNMENT 999 Y12-9f23.q1k chr10 31 1163 532975 534097 F 1133 97.71 1175 accept 0 ALIGNMENT 910 Y12-9g01.q1k chr11 30 1293 366306 367561 F 1264 92.33 1295 accept 0 ALIGNMENT 1002 Y12-9g01.p1k chr11 1192 18 369299 370452 C 1175 96.77 1442 accept 0 ALIGNMENT 1022 Y12-9g02.p1k chr11 1222 24 590200 591405 C 1199 96.16 1374 accept 0 ALIGNMENT 975 Y12-9g02.q1k chr11 27 1264 586684 587910 F 1238 94.35 1277 accept 0 ALIGNMENT 974 Y12-9g03.p1k chr02 1141 26 756965 758096 C 1116 97.31 1388 accept 0 ALIGNMENT 1003 Y12-9g03.q1k chr02 29 1233 753822 755038 F 1205 95.93 1386 accept 0 ALIGNMENT 1056 Y12-9g06.p1k chr12 1246 23 453672 454912 C 1224 96.32 1458 accept 0 ALIGNMENT 0 Y12-9g06.q1k chr12 558 891 490543 490542 F 334 0.00 1296 reject_low 2 ALIGNMENT 514 Y12-9g06.q1k chr12 36 557 490022 490543 F 522 99.62 1296 reject_low 2 ALIGNMENT 1008 Y12-9g06.q1k chr12 36 1138 452054 453167 F 1103 97.64 1296 accept 0 ALIGNMENT 1008 Y12-9g06.q1k chr12 36 1138 461191 462304 F 1103 97.64 1296 accept 1 ALIGNMENT 1056 Y12-9g06.p1k chr12 1246 23 462809 464049 C 1224 96.32 1458 accept 1 ALIGNMENT 24 Y12-9g07.q1k chr10 659 683 702963 702987 F 25 100.00 1278 reject_low 1 ALIGNMENT 954 Y12-9g07.q1k chr08 39 1228 504873 506098 F 1190 94.03 1278 accept 0 ALIGNMENT 0 Y12-9g07.q1k chr10 426 658 702726 702962 F 233 0.00 1278 reject_low 1 ALIGNMENT 343 Y12-9g07.q1k chr10 42 425 702342 702725 F 384 96.61 1278 reject_low 1 ALIGNMENT 1006 Y12-9g07.p1k chr08 1148 20 510082 511227 C 1129 97.08 1386 accept 0 ALIGNMENT 0 Y12-9g07.q1k chr10 684 850 702987 702986 F 167 0.00 1278 reject_low 1 ALIGNMENT 1003 Y12-9g08.p1k chr13 1163 22 861446 862597 C 1142 96.23 1387 accept 0 ALIGNMENT 1006 Y12-9g08.q1k chr13 36 1216 860755 861939 F 1181 95.85 1279 accept 0 ALIGNMENT 1037 Y12-9g09.q1k chr07 32 1279 31324 32555 F 1248 95.83 1333 accept 0 ALIGNMENT 950 Y12-9g09.p1k chr07 1124 22 35987 37102 C 1103 96.37 1404 accept 0 ALIGNMENT 1032 Y12-9g10.q1k chr15 1170 38 907841 908980 C 1133 97.71 1291 accept 0 ALIGNMENT 899 Y12-9g10.p1k chr15 17 1081 903595 904662 F 1065 95.96 1388 accept 0 ALIGNMENT 998 Y12-9g11.q1k chr15 31 1208 404359 405546 F 1178 95.76 1297 accept 0 ALIGNMENT 1035 Y12-9g11.p1k chr15 1242 18 409299 410540 C 1225 96.16 1443 accept 0 ALIGNMENT 961 Y12-9g12.p1k chr16 21 1141 202017 203156 F 1121 96.52 1390 accept 0 ALIGNMENT 1082 Y12-9g12.q1k chr16 1305 39 205023 206294 C 1267 96.29 1318 accept 0 ALIGNMENT 799 Y12-9g13.q1k chr16 1073 39 254220 255271 C 1035 93.62 1245 accept 0 ALIGNMENT 850 Y12-9g13.p1k chr16 22 1051 250893 251931 F 1030 95.34 1357 accept 0 ALIGNMENT 1017 Y12-9g14.q1k chr05 1319 33 352497 353780 C 1287 94.33 1324 accept 0 ALIGNMENT 1048 Y12-9g14.p1k chr05 20 1276 349328 350590 F 1257 95.15 1471 accept 0 ALIGNMENT 993 Y12-9g16.p1k chr16 1254 20 932364 933614 C 1235 95.22 1447 accept 0 ALIGNMENT 0 Y12-9g16.p1k chr04 328 62 437416 437415 C 267 0.00 1447 reject_low 2 ALIGNMENT 32 Y12-9g16.p1k chr15 394 329 703977 704042 C 66 86.36 1447 reject_low 5 ALIGNMENT 0 Y12-9g16.p1k chr15 328 62 704043 704042 C 267 0.00 1447 reject_low 5 ALIGNMENT 0 Y12-9g16.p1k chr15 919 395 703978 703977 C 525 0.00 1447 reject_low 5 ALIGNMENT 0 Y12-9g16.p1k chr16 62 328 436988 436987 F 267 0.00 1447 reject_low 6 ALIGNMENT 972 Y12-9g16.q1k chr16 35 1212 930368 931546 F 1178 94.65 1289 accept 0 ALIGNMENT 0 Y12-9g16.p1k chr02 395 919 643649 643648 F 525 0.00 1447 reject_low 3 ALIGNMENT 29 Y12-9g16.p1k chr16 329 394 436988 437053 F 66 84.85 1447 reject_low 6 ALIGNMENT 0 Y12-9g16.p1k chr14 919 395 561813 561812 C 525 0.00 1447 reject_low 4 ALIGNMENT 0 Y12-9g16.p1k chr16 395 919 437053 437052 F 525 0.00 1447 reject_low 6 ALIGNMENT 30 Y12-9g16.p1k chr04 435 329 437309 437415 C 107 79.44 1447 reject_low 2 ALIGNMENT 0 Y12-9g16.p1k chr14 328 62 561878 561877 C 267 0.00 1447 reject_low 4 ALIGNMENT 32 Y12-9g16.p1k chr14 394 329 561812 561877 C 66 86.36 1447 reject_low 4 ALIGNMENT 0 Y12-9g16.p1k chr02 62 328 643584 643583 F 267 0.00 1447 reject_low 3 ALIGNMENT 32 Y12-9g16.p1k chr02 329 394 643584 643649 F 66 86.36 1447 reject_low 3 ALIGNMENT 0 Y12-9g16.p1k chr04 919 436 437310 437309 C 484 0.00 1447 reject_low 2 ALIGNMENT 0 Y12-9g16.p1k chr02 847 62 801924 801923 C 786 0.00 1447 reject_low 1 ALIGNMENT 160 Y12-9g16.p1k chr02 1171 848 801597 801923 C 324 83.02 1447 reject_low 1 ALIGNMENT 1026 Y12-9g17.p1k chr07 1210 21 375911 377115 C 1190 96.22 1399 accept 0 ALIGNMENT 1023 Y12-9g17.q1k chr07 34 1309 371604 372895 F 1276 94.75 1313 accept 0 ALIGNMENT 0 Y12-9g18.p1k chr04 628 547 549894 549978 C 82 0.00 1384 reject_low 1 ALIGNMENT 0 Y12-9g18.p1k chr04 855 721 549803 549802 C 135 0.00 1384 reject_low 1 ALIGNMENT 1022 Y12-9g18.p1k chr02 1202 18 377152 378353 C 1185 95.61 1384 accept 0 ALIGNMENT 20 Y12-9g18.p1k chr04 546 482 549979 550043 C 65 76.92 1384 reject_low 1 ALIGNMENT 26 Y12-9g18.p1k chr04 720 629 549802 549893 C 92 77.17 1384 reject_low 1 ALIGNMENT 0 Y12-9g18.p1k chr04 481 62 550044 550043 C 420 0.00 1384 reject_low 1 ALIGNMENT 998 Y12-9g18.q1k chr02 36 1154 373455 374583 F 1119 97.23 1292 accept 0 ALIGNMENT 1093 Y12-9g19.q1k chr12 36 1242 451730 452943 F 1207 97.27 1242 accept 0 ALIGNMENT 1024 Y12-9g19.p1k chr12 1157 25 455901 457049 C 1133 97.35 1360 accept 0 ALIGNMENT 1024 Y12-9g19.p1k chr12 1157 25 465038 466186 C 1133 97.35 1360 accept 1 ALIGNMENT 1093 Y12-9g19.q1k chr12 36 1242 460867 462080 F 1207 97.27 1242 accept 1 ALIGNMENT 761 Y12-9g19.q1k chr12 92 881 489754 490543 F 790 98.99 1242 reject_low 2 ALIGNMENT 0 Y12-9g19.q1k chr12 62 91 489754 489753 F 30 0.00 1242 reject_low 2 ALIGNMENT 997 Y12-9g20.q1k chr13 35 1155 147473 148603 F 1121 97.95 1222 accept 0 ALIGNMENT 1013 Y12-9g20.p1k chr13 1215 27 151265 152467 C 1189 96.30 1381 accept 0 ALIGNMENT 988 Y12-9g21.p1k chr09 23 1156 254235 255388 F 1134 96.91 1318 accept 0 ALIGNMENT 1026 Y12-9g21.q1k chr09 1180 32 257575 258726 C 1149 97.21 1196 accept 0 ALIGNMENT 896 Y12-9g22.p1k chr13 1051 21 401883 402930 C 1031 97.09 1266 accept_chi 1 ALIGNMENT 946 Y12-9g22.q1k chr15 40 1191 662219 663362 F 1152 95.31 1196 accept_chi 0 ALIGNMENT 1027 Y12-9g23.q1k chr11 1186 36 156915 158072 C 1151 97.22 1186 accept 0 ALIGNMENT 972 Y12-9g23.p1k chr11 27 1166 153422 154580 F 1140 96.23 1292 accept 0 ALIGNMENT 0 Y12-9g24.p1k chr05 408 62 443393 443392 C 347 0.00 1323 reject_low 33 ALIGNMENT 664 Y12-9g24.p1k chr15 1126 104 122601 123627 C 1023 90.52 1323 reject_low 29 ALIGNMENT 517 Y12-9g24.q1k chr10 35 940 478583 479487 F 906 86.75 1255 reject_low 25 ALIGNMENT 560 Y12-9g24.p1k chr13 1126 125 201230 202234 C 1002 87.62 1323 reject_low 16 ALIGNMENT 521 Y12-9g24.q1k chr10 35 1058 472999 474009 F 1024 85.35 1255 reject_low 4 ALIGNMENT 0 Y12-9g24.p1k chr05 62 103 443393 443392 F 42 0.00 1323 reject_low 14 ALIGNMENT 869 Y12-9g24.p1k chr15 1154 124 599688 600714 C 1031 97.09 1323 reject_low 7 ALIGNMENT 684 Y12-9g24.p1k chr05 298 1255 492691 493639 F 958 93.01 1323 ambiguous_trans 2 ALIGNMENT 0 Y12-9g24.p1k chr15 123 62 600715 600714 C 62 0.00 1323 reject_low 7 ALIGNMENT 0 Y12-9g24.p1k chr16 62 277 850353 850352 F 216 0.00 1323 reject_low 32 ALIGNMENT 0 Y12-9g24.p1k chr02 123 62 265473 265472 C 62 0.00 1323 reject_low 8 ALIGNMENT 908 Y12-9g24.q1k chr13 1058 29 361291 362307 C 1030 97.77 1255 ambiguous_trans 1 ALIGNMENT 0 Y12-9g24.p1k chr01 436 870 166163 166162 F 435 0.00 1323 reject_low 30 ALIGNMENT 917 Y12-9g24.p1k chr02 1255 103 225813 226956 C 1153 95.58 1323 ambiguous_trans 0 ALIGNMENT 0 Y12-9g24.p1k chr15 103 62 123628 123627 C 42 0.00 1323 reject_low 29 ALIGNMENT 508 Y12-9g24.q1k chr16 35 1058 845030 846040 F 1024 84.96 1255 reject_low 12 ALIGNMENT 914 Y12-9g24.q1k chr02 29 1058 221652 222668 F 1030 97.96 1255 ambiguous_trans 0 ALIGNMENT 517 Y12-9g24.q1k chr05 1044 35 447697 448695 C 1010 85.35 1255 reject_low 14 ALIGNMENT 0 Y12-9g24.p1k chr07 62 123 817418 817417 F 62 0.00 1323 reject_low 18 ALIGNMENT 508 Y12-9g24.q1k chr15 35 1058 595437 596447 F 1024 84.96 1255 reject_low 7 ALIGNMENT 521 Y12-9g24.q1k chr12 1058 35 480267 481277 C 1024 85.35 1255 reject_low 13 ALIGNMENT 0 Y12-9g24.p1k chr07 103 62 541690 541689 C 42 0.00 1323 reject_low 17 ALIGNMENT 866 Y12-9g24.p1k chr02 1154 124 264446 265472 C 1031 96.99 1323 reject_low 8 ALIGNMENT 909 Y12-9g24.p1k chr13 104 1255 357004 358146 F 1152 95.40 1323 ambiguous_trans 1 ALIGNMENT 521 Y12-9g24.q1k chr12 35 1058 651444 652454 F 1024 85.35 1255 reject_low 20 ALIGNMENT 0 Y12-9g24.p1k chr16 123 62 850317 850316 C 62 0.00 1323 reject_low 12 ALIGNMENT 0 Y12-9g24.p1k chr07 870 239 817279 817278 C 632 0.00 1323 reject_low 31 ALIGNMENT 782 Y12-9g24.q1k chr14 1058 35 100897 101907 C 1024 93.85 1255 reject_low 3 ALIGNMENT 23 Y12-9g24.p1k chr16 278 435 850353 850508 F 158 74.68 1323 reject_low 32 ALIGNMENT 882 Y12-9g24.p1k chr14 104 1263 96610 97760 F 1160 94.48 1323 reject_low 3 ALIGNMENT 0 Y12-9g24.p1k chr12 62 123 215101 215100 F 62 0.00 1323 reject_low 5 ALIGNMENT 0 Y12-9g24.p1k chr02 102 62 226957 226956 C 41 0.00 1323 ambiguous_trans 0 ALIGNMENT 517 Y12-9g24.q1k chr07 1044 35 566148 567146 C 1010 85.35 1255 reject_low 23 ALIGNMENT 0 Y12-9g24.p1k chr12 62 99 475971 475970 F 38 0.00 1323 reject_low 13 ALIGNMENT 0 Y12-9g24.p1k chr14 62 103 96610 96609 F 42 0.00 1323 reject_low 3 ALIGNMENT 57 Y12-9g24.p1k chr07 238 127 817278 817387 C 112 86.61 1323 reject_low 31 ALIGNMENT 0 Y12-9g24.p1k chr13 62 123 372716 372715 F 62 0.00 1323 reject_low 6 ALIGNMENT 0 Y12-9g24.p1k chr01 62 95 160231 160230 F 34 0.00 1323 reject_low 9 ALIGNMENT 0 Y12-9g24.p1k chr13 124 62 202235 202234 C 63 0.00 1323 reject_low 16 ALIGNMENT 21 Y12-9g24.p1k chr05 436 409 443365 443392 C 28 92.86 1323 reject_low 33 ALIGNMENT 0 Y12-9g24.p1k chr13 123 62 190064 190063 C 62 0.00 1323 reject_low 11 ALIGNMENT 0 Y12-9g24.p1k chr13 62 103 357004 357003 F 42 0.00 1323 ambiguous_trans 1 ALIGNMENT 508 Y12-9g24.q1k chr04 1058 35 882587 883597 C 1024 84.96 1255 reject_low 26 ALIGNMENT 511 Y12-9g24.q1k chr12 1058 35 219374 220384 C 1024 85.06 1255 reject_low 5 ALIGNMENT 53 Y12-9g24.p1k chr05 18 87 492619 492690 F 70 95.71 1323 ambiguous_trans 2 ALIGNMENT 0 Y12-9g24.p1k chr05 88 297 492691 492690 F 210 0.00 1323 ambiguous_trans 2 ALIGNMENT 505 Y12-9g24.q1k chr02 35 1058 260192 261202 F 1024 84.86 1255 reject_low 8 ALIGNMENT 870 Y12-9g24.p1k chr07 124 1154 817418 818444 F 1031 97.19 1323 reject_low 18 ALIGNMENT 0 Y12-9g24.p1k chr05 870 437 443366 443365 C 434 0.00 1323 reject_low 33 ALIGNMENT 878 Y12-9g24.q1k chr04 29 1058 803509 804525 F 1030 96.80 1255 reject_low 15 ALIGNMENT 601 Y12-9g24.p1k chr01 96 1263 160231 161394 F 1168 86.22 1323 reject_low 9 ALIGNMENT 0 Y12-9g24.p1k chr07 126 62 817388 817387 C 65 0.00 1323 reject_low 31 ALIGNMENT 517 Y12-9g24.q1k chr16 1058 35 808930 809940 C 1024 85.25 1255 reject_low 22 ALIGNMENT 0 Y12-9g24.p1k chr10 102 62 483888 483887 C 41 0.00 1323 reject_low 4 ALIGNMENT 823 Y12-9g24.p1k chr12 124 1263 215101 216237 F 1140 93.33 1323 reject_low 5 ALIGNMENT 823 Y12-9g24.p1k chr13 124 1255 372716 373844 F 1132 93.46 1323 reject_low 6 ALIGNMENT 857 Y12-9g24.p1k chr07 1288 104 540510 541689 C 1185 93.42 1323 reject_low 17 ALIGNMENT 210 Y12-9g24.p1k chr01 104 435 165827 166163 F 332 90.06 1323 reject_low 30 ALIGNMENT 733 Y12-9g24.p1k chr08 124 1126 543630 544630 F 1003 93.22 1323 reject_low 27 ALIGNMENT 517 Y12-9g24.q1k chr04 940 35 991114 992018 C 906 86.75 1255 reject_low 24 ALIGNMENT 721 Y12-9g24.p1k chr13 1060 124 189126 190063 C 937 94.34 1323 reject_low 11 ALIGNMENT 0 Y12-9g24.p1k chr08 62 123 543630 543629 F 62 0.00 1323 reject_low 27 ALIGNMENT 514 Y12-9g24.q1k chr13 35 1058 184786 185796 F 1024 85.16 1255 reject_low 11 ALIGNMENT 524 Y12-9g24.q1k chr16 1058 35 854918 855928 C 1024 85.45 1255 reject_low 10 ALIGNMENT 0 Y12-9g24.p1k chr01 62 103 165827 165826 F 42 0.00 1323 reject_low 30 ALIGNMENT 0 Y12-9g24.p1k chr04 123 62 1101668 1101667 C 62 0.00 1323 reject_low 28 ALIGNMENT 591 Y12-9g24.p1k chr12 100 1126 475971 477000 F 1027 88.12 1323 reject_low 13 ALIGNMENT 855 Y12-9g24.p1k chr10 1288 103 482707 483887 C 1186 93.34 1323 reject_low 4 ALIGNMENT 521 Y12-9g24.q1k chr04 1058 35 649786 650796 C 1024 85.35 1255 reject_low 19 ALIGNMENT 517 Y12-9g24.q1k chr01 940 35 164638 165542 C 906 86.75 1255 reject_low 9 ALIGNMENT 511 Y12-9g24.q1k chr13 1058 35 376989 377999 C 1024 85.06 1255 reject_low 6 ALIGNMENT 706 Y12-9g24.p1k chr04 1126 124 1100661 1101667 C 1003 92.42 1323 reject_low 28 ALIGNMENT 0 Y12-9g24.p1k chr16 436 870 850508 850507 F 435 0.00 1323 reject_low 32 ALIGNMENT 518 Y12-9g24.q1k chr13 35 1055 196953 197960 F 1021 85.31 1255 reject_low 16 ALIGNMENT 511 Y12-9g24.q1k chr05 1058 35 496784 497794 C 1024 85.06 1255 ambiguous_trans 2 ALIGNMENT 731 Y12-9g24.p1k chr16 104 1126 850625 851651 F 1023 92.67 1323 reject_low 10 ALIGNMENT 521 Y12-9g24.q1k chr16 35 1058 57073 58083 F 1024 85.35 1255 reject_low 21 ALIGNMENT 694 Y12-9g24.p1k chr16 1055 124 849378 850316 C 932 93.56 1323 reject_low 12 ALIGNMENT 582 Y12-9g24.p1k chr05 104 1126 443393 444418 F 1023 87.88 1323 reject_low 14 ALIGNMENT 0 Y12-9g24.p1k chr16 62 103 850625 850624 F 42 0.00 1323 reject_low 10 ALIGNMENT 1041 Y12-9h02.p1k chr15 1204 19 964464 965660 C 1186 97.13 1357 accept 0 ALIGNMENT 841 Y12-9h02.q1k chr15 35 1042 960206 961236 F 1008 96.63 1222 accept 0 ALIGNMENT 986 Y12-9h03.p1k chr07 1221 20 229953 231162 C 1202 95.59 1379 accept 0 ALIGNMENT 1017 Y12-9h03.q1k chr07 34 1237 226749 227963 F 1204 95.51 1395 accept 0 ALIGNMENT 993 Y12-9h04.p1k chr15 1215 18 275918 277130 C 1198 95.66 1380 accept 0 ALIGNMENT 996 Y12-9h04.q1k chr15 32 1140 272542 273666 F 1109 97.66 1360 accept 0 ALIGNMENT 27 Y12-9h05.p1k chr02 747 779 791264 791296 F 33 93.94 1427 reject_low 1 ALIGNMENT 0 Y12-9h05.p1k chr02 780 821 791296 791295 F 42 0.00 1427 reject_low 1 ALIGNMENT 970 Y12-9h05.q1k chr12 1112 45 328628 329712 C 1068 97.66 1287 accept 0 ALIGNMENT 1015 Y12-9h05.p1k chr12 28 1171 324998 326154 F 1144 96.68 1427 accept 0 ALIGNMENT 0 Y12-9h05.p1k chr02 62 746 791264 791263 F 685 0.00 1427 reject_low 1 ALIGNMENT 946 Y12-9h06.q1k chr04 1147 38 1028301 1029420 C 1110 95.77 1294 accept 0 ALIGNMENT 1044 Y12-9h06.p1k chr04 20 1222 1025080 1026298 F 1203 96.59 1448 accept 0 ALIGNMENT 1044 Y12-9h07.q1k chr12 1275 37 859145 860384 C 1239 95.64 1288 accept_chi 1 ALIGNMENT 1092 Y12-9h07.p1k chr02 1288 20 704947 706228 C 1269 96.14 1410 accept_chi 0 ALIGNMENT 1003 Y12-9h09.p1k chr13 1215 15 436195 437412 C 1201 95.59 1416 accept 0 ALIGNMENT 900 Y12-9h09.q1k chr13 40 1134 432740 433866 F 1095 95.43 1284 accept 0 ALIGNMENT 936 Y12-9h10.p1k chr15 1107 20 1000538 1001642 C 1088 96.78 1377 accept 0 ALIGNMENT 1052 Y12-9h10.q1k chr15 42 1257 997624 998851 F 1216 96.38 1317 accept 0 ALIGNMENT 0 Y12-9h11.p1k chr13 750 902 808905 808904 F 153 0.00 1410 reject_low 5 ALIGNMENT 0 Y12-9h11.p1k chr16 62 591 881667 881666 F 530 0.00 1410 reject_low 1 ALIGNMENT 32 Y12-9h11.p1k chr13 680 749 808838 808905 F 70 85.71 1410 reject_low 5 ALIGNMENT 0 Y12-9h11.p1k chr16 752 902 881828 881827 F 151 0.00 1410 reject_low 1 ALIGNMENT 32 Y12-9h11.p1k chr13 749 680 503770 503837 C 70 85.71 1410 reject_low 4 ALIGNMENT 0 Y12-9h11.p1k chr10 902 750 197465 197464 C 153 0.00 1410 reject_low 3 ALIGNMENT 29 Y12-9h11.p1k chr07 680 749 931476 931543 F 70 84.29 1410 reject_low 8 ALIGNMENT 0 Y12-9h11.p1k chr14 62 679 632424 632423 F 618 0.00 1410 reject_low 6 ALIGNMENT 35 Y12-9h11.p1k chr14 749 680 561608 561675 C 70 87.14 1410 reject_low 2 ALIGNMENT 0 Y12-9h11.p1k chr14 750 902 632491 632490 F 153 0.00 1410 reject_low 6 ALIGNMENT 0 Y12-9h11.p1k chr07 750 902 931543 931542 F 153 0.00 1410 reject_low 8 ALIGNMENT 32 Y12-9h11.p1k chr10 749 680 197464 197531 C 70 85.71 1410 reject_low 3 ALIGNMENT 735 Y12-9h11.q1k chr07 1116 38 324056 325162 C 1079 90.55 1303 accept 0 ALIGNMENT 28 Y12-9h11.p1k chr16 592 751 881667 881828 F 160 75.00 1410 reject_low 1 ALIGNMENT 0 Y12-9h11.p1k chr14 902 750 561609 561608 C 153 0.00 1410 reject_low 2 ALIGNMENT 0 Y12-9h11.p1k chr16 62 679 443042 443041 F 618 0.00 1410 reject_low 7 ALIGNMENT 0 Y12-9h11.p1k chr10 679 62 197532 197531 C 618 0.00 1410 reject_low 3 ALIGNMENT 32 Y12-9h11.p1k chr14 680 749 632424 632491 F 70 85.71 1410 reject_low 6 ALIGNMENT 0 Y12-9h11.p1k chr07 62 679 931476 931475 F 618 0.00 1410 reject_low 8 ALIGNMENT 0 Y12-9h11.p1k chr14 679 62 561676 561675 C 618 0.00 1410 reject_low 2 ALIGNMENT 933 Y12-9h11.p1k chr07 21 1158 319981 321134 F 1138 95.61 1410 accept 0 ALIGNMENT 0 Y12-9h11.p1k chr13 679 62 503838 503837 C 618 0.00 1410 reject_low 4 ALIGNMENT 0 Y12-9h11.p1k chr16 750 902 443109 443108 F 153 0.00 1410 reject_low 7 ALIGNMENT 32 Y12-9h11.p1k chr16 680 749 443042 443109 F 70 85.71 1410 reject_low 7 ALIGNMENT 0 Y12-9h11.p1k chr13 902 750 503771 503770 C 153 0.00 1410 reject_low 4 ALIGNMENT 0 Y12-9h11.p1k chr13 62 679 808838 808837 F 618 0.00 1410 reject_low 5 ALIGNMENT 987 Y12-9h13.q1k chr12 1241 32 64943 66161 C 1210 94.55 1306 accept 0 ALIGNMENT 21 Y12-9h13.q1k chr12 1023 991 64941 64973 C 33 87.88 1306 reject_low 1 ALIGNMENT 955 Y12-9h13.p1k chr12 20 1137 61501 62634 F 1118 96.15 1383 accept 0 ALIGNMENT 0 Y12-9h13.q1k chr12 990 62 64974 64973 C 929 0.00 1306 reject_low 1 ALIGNMENT 884 Y12-9h14.p1k chr11 22 1068 549377 550446 F 1047 96.18 1329 accept 0 ALIGNMENT 968 Y12-9h14.q1k chr11 1251 38 552707 553904 C 1214 94.98 1324 accept 0 ALIGNMENT 1033 Y12-9h15.p1k chr04 1203 26 1382268 1383448 C 1178 96.52 1438 accept 0 ALIGNMENT 1011 Y12-9h15.q1k chr04 28 1202 1380042 1381226 F 1175 96.51 1264 accept 0 ALIGNMENT 1003 Y12-9h16.q1k chr07 1203 44 368507 369668 C 1160 95.95 1283 accept 0 ALIGNMENT 963 Y12-9h16.p1k chr07 18 1129 363072 364199 F 1112 96.40 1346 accept 0 ALIGNMENT 968 Y12-9h17.q1k chr14 37 1203 672519 673707 F 1167 95.80 1299 accept 0 ALIGNMENT 982 Y12-9h17.p1k chr14 1145 15 676762 677909 C 1131 96.11 1345 accept 0 ALIGNMENT 1011 Y12-9h18.q1k chr07 33 1236 1026640 1027849 F 1204 95.43 1317 accept 0 ALIGNMENT 917 Y12-9h18.p1k chr07 1167 23 1030559 1031726 C 1145 94.41 1357 accept 0 ALIGNMENT 952 Y12-9h19.p1k chr07 12 1071 83750 84812 F 1060 97.74 1348 accept 0 ALIGNMENT 1008 Y12-9h19.q1k chr07 1245 33 88164 89367 C 1213 96.04 1248 accept 0 ALIGNMENT 889 Y12-9h20.q1k chr04 1070 37 1074203 1075247 C 1034 96.32 1204 accept 0 ALIGNMENT 989 Y12-9h20.p1k chr04 17 1151 1070570 1071730 F 1135 96.83 1348 accept 0 ALIGNMENT 126 Y12-9h21.p1k chr02 792 555 801601 801838 C 238 85.71 1350 ambiguous_tel 4 ALIGNMENT 29 Y12-9h21.p1k chr02 1066 1017 801333 801382 C 50 88.00 1350 ambiguous_tel 4 ALIGNMENT 320 Y12-9h21.q1k chr04 1090 34 6408 7468 C 1057 77.58 1202 reject_low 1 ALIGNMENT 111 Y12-9h21.p1k chr16 1024 555 932230 932699 C 470 75.32 1350 ambiguous_tel 3 ALIGNMENT 320 Y12-9h21.q1k chr10 34 1090 738248 739308 F 1057 77.58 1202 reject_low 2 ALIGNMENT 0 Y12-9h21.p1k chr02 1016 793 801383 801600 C 224 0.00 1350 ambiguous_tel 4 ALIGNMENT 0 Y12-9h21.p1k chr16 554 272 932700 932699 C 283 0.00 1350 ambiguous_tel 3 ALIGNMENT 0 Y12-9h21.p1k chr02 554 272 801839 801838 C 283 0.00 1350 ambiguous_tel 4 ALIGNMENT 642 Y12-9h21.q1k chr02 29 1146 802978 804097 F 1118 87.03 1202 accept 0 ALIGNMENT 961 Y12-9h22.q1k chr03 1178 37 192079 193221 C 1142 95.36 1211 accept 0 ALIGNMENT 883 Y12-9h22.p1k chr03 17 1075 187888 188958 F 1059 96.03 1319 accept 0 ALIGNMENT 998 Y12-9h23.p1k chr02 1165 17 458248 459382 C 1149 97.48 1361 accept 0 ALIGNMENT 1006 Y12-9h23.q1k chr02 31 1153 454197 455316 F 1123 97.24 1205 accept 0 ALIGNMENT 887 Y12-9h24.q1k chr12 1099 32 293671 294729 C 1068 96.25 1213 accept_chi 0 ALIGNMENT 540 Y12-9h24.p1k chr03 46 1028 187931 188891 F 983 87.28 1417 accept_chi 1 ALIGNMENT 889 Y12-9i01.p1k chr12 1115 17 457859 458928 C 1099 96.00 1429 accept 0 ALIGNMENT 971 Y12-9i01.q1k chr12 31 1092 461868 462918 F 1062 98.12 1406 accept 1 ALIGNMENT 889 Y12-9i01.p1k chr12 1115 17 466996 468065 C 1099 96.00 1429 accept 1 ALIGNMENT 971 Y12-9i01.q1k chr12 31 1092 452731 453781 F 1062 98.12 1406 accept 0 ALIGNMENT 976 Y12-9i02.p1k chr07 25 1167 578163 579312 F 1143 96.06 1385 accept 0 ALIGNMENT 878 Y12-9i02.q1k chr07 1038 32 583000 584005 C 1007 96.43 1362 accept 0 ALIGNMENT 972 Y12-9i03.q1k chr08 1112 18 103239 104335 C 1095 97.26 1318 accept 0 ALIGNMENT 999 Y12-9i03.p1k chr08 15 1210 100311 101523 F 1196 96.40 1398 accept 0 ALIGNMENT 1006 Y12-9i04.q1k chr10 1209 10 323191 324389 C 1200 95.75 1338 accept 0 ALIGNMENT 974 Y12-9i04.p1k chr10 17 1196 319212 320411 F 1180 95.68 1371 accept 0 ALIGNMENT 998 Y12-9i05.q1k chr14 1164 31 169605 170751 C 1134 97.00 1359 accept 0 ALIGNMENT 1004 Y12-9i05.p1k chr14 18 1184 166000 167181 F 1167 96.57 1418 accept 0 ALIGNMENT 961 Y12-9i06.q1k chr12 1171 36 433425 434581 C 1136 96.13 1383 accept 0 ALIGNMENT 1025 Y12-9i06.p1k chr12 17 1186 428229 429409 F 1170 97.01 1403 accept 0 ALIGNMENT 977 Y12-9i07.q1k chr15 1200 36 173218 174399 C 1165 95.62 1328 accept 0 ALIGNMENT 876 Y12-9i07.p1k chr15 17 1025 168329 169350 F 1009 97.03 1354 accept 0 ALIGNMENT 0 Y12-9i08.p1k chr10 842 168 1670 1669 C 675 0.00 1442 reject_low 239 ALIGNMENT 0 Y12-9i08.p1k chr02 842 389 1770 1769 C 454 0.00 1442 reject_low 167 ALIGNMENT 0 Y12-9i08.p1k chr04 204 842 1530488 1530487 F 639 0.00 1442 reject_low 226 ALIGNMENT 0 Y12-9i08.p1k chr13 304 62 2070 2069 C 243 0.00 1442 reject_low 288 ALIGNMENT 0 Y12-9i08.p1k chr04 62 127 1530089 1530088 F 66 0.00 1442 reject_low 196 ALIGNMENT 0 Y12-9i08.p1k chr06 842 204 894 893 C 639 0.00 1442 reject_low 207 ALIGNMENT 0 Y12-9i08.p1k chr15 240 842 1089653 1089652 F 603 0.00 1442 reject_low 163 ALIGNMENT 141 Y12-9i08.p1k chr05 383 22 1686 2047 C 362 81.22 1442 reject_low 125 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 2102 2101 C 459 0.00 1442 reject_low 275 ALIGNMENT 0 Y12-9i08.p1k chr12 373 842 1069799 1069798 F 470 0.00 1442 reject_low 222 ALIGNMENT 0 Y12-9i08.p1k chr12 348 842 1076689 1076688 F 495 0.00 1442 reject_low 82 ALIGNMENT 207 Y12-9i08.p1k chr10 383 22 1813 2174 C 362 87.29 1442 reject_low 56 ALIGNMENT 0 Y12-9i08.p1k chr08 348 842 560841 560840 F 495 0.00 1442 reject_low 117 ALIGNMENT 34 Y12-9i08.p1k chr10 136 26 1664 1774 C 111 77.48 1442 reject_low 296 ALIGNMENT 66 Y12-9i08.p1k chr04 30 203 1530315 1530488 F 174 80.46 1442 reject_low 226 ALIGNMENT 0 Y12-9i08.p1k chr02 842 384 1559 1558 C 459 0.00 1442 reject_low 59 ALIGNMENT 0 Y12-9i08.p1k chr05 385 842 575066 575065 F 458 0.00 1442 reject_low 242 ALIGNMENT 0 Y12-9i08.p1k chr04 276 842 1530488 1530487 F 567 0.00 1442 reject_low 108 ALIGNMENT 43 Y12-9i08.p1k chr12 305 372 1069624 1069691 F 68 89.71 1442 reject_low 287 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946098 946097 F 459 0.00 1442 reject_low 273 ALIGNMENT 0 Y12-9i08.p1k chr05 62 268 574915 574914 F 207 0.00 1442 reject_low 268 ALIGNMENT 0 Y12-9i08.p1k chr12 842 373 2019 2018 C 470 0.00 1442 reject_low 324 ALIGNMENT 0 Y12-9i08.p1k chr15 276 842 1089653 1089652 F 567 0.00 1442 reject_low 114 ALIGNMENT 0 Y12-9i08.p1k chr04 384 842 1530200 1530199 F 459 0.00 1442 reject_low 276 ALIGNMENT 0 Y12-9i08.p1k chr15 381 842 1089542 1089541 F 462 0.00 1442 reject_low 154 ALIGNMENT 0 Y12-9i08.p1k chr07 62 138 1088970 1088969 F 77 0.00 1442 reject_low 175 ALIGNMENT 0 Y12-9i08.p1k chr15 62 304 1089251 1089250 F 243 0.00 1442 reject_low 290 ALIGNMENT 64 Y12-9i08.p1k chr07 211 384 1088970 1089143 F 174 81.03 1442 reject_low 243 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 2083 2082 C 459 0.00 1442 reject_low 241 ALIGNMENT 0 Y12-9i08.p1k chr14 842 276 1575 1574 C 567 0.00 1442 reject_low 113 ALIGNMENT 0 Y12-9i08.p1k chr05 62 318 574893 574892 F 257 0.00 1442 reject_low 301 ALIGNMENT 0 Y12-9i08.p1k chr08 384 842 560661 560660 F 459 0.00 1442 reject_low 166 ALIGNMENT 0 Y12-9i08.p1k chr07 62 268 1088992 1088991 F 207 0.00 1442 reject_low 269 ALIGNMENT 0 Y12-9i08.p1k chr10 207 62 2205 2204 C 146 0.00 1442 reject_low 211 ALIGNMENT 0 Y12-9i08.p1k chr08 304 62 1910 1909 C 243 0.00 1442 reject_low 297 ALIGNMENT 0 Y12-9i08.p1k chr14 138 62 1999 1998 C 77 0.00 1442 reject_low 178 ALIGNMENT 0 Y12-9i08.p1k chr08 268 62 1910 1909 C 207 0.00 1442 reject_low 293 ALIGNMENT 24 Y12-9i08.q1k chr08 359 330 558694 558723 C 30 93.33 1329 reject_low 344 ALIGNMENT 0 Y12-9i08.p1k chr12 385 842 1069775 1069774 F 458 0.00 1442 reject_low 263 ALIGNMENT 0 Y12-9i08.q1k chr08 256 276 3620 3609 F 21 0.00 1329 reject_low 343 ALIGNMENT 0 Y12-9i08.p1k chr12 62 127 1069627 1069626 F 66 0.00 1442 reject_low 197 ALIGNMENT 47 Y12-9i08.p1k chr05 372 195 1877 2054 C 178 77.53 1442 reject_low 281 ALIGNMENT 170 Y12-9i08.p1k chr15 31 383 1089229 1089581 F 353 84.42 1442 reject_low 104 ALIGNMENT 0 Y12-9i08.p1k chr12 272 273 2190 7328 C 0 0.00 1442 reject_low 320 ALIGNMENT 117 Y12-9i08.p1k chr15 67 380 1089229 1089542 F 314 80.89 1442 reject_low 154 ALIGNMENT 0 Y12-9i08.p1k chr16 373 842 946303 946302 F 470 0.00 1442 reject_low 70 ALIGNMENT 29 Y12-9i08.p1k chr09 384 345 2189 2228 C 40 92.50 1442 reject_low 313 ALIGNMENT 120 Y12-9i08.p1k chr02 239 30 1486 1695 C 210 87.14 1442 reject_low 138 ALIGNMENT 183 Y12-9i08.p1k chr10 383 22 1777 2138 C 362 85.08 1442 reject_low 69 ALIGNMENT 52 Y12-9i08.p1k chr12 269 383 1076287 1076401 F 115 84.35 1442|4,0 reject_low 321,323 ALIGNMENT 0 Y12-9i08.p1k chr02 240 62 2025 2024 C 179 0.00 1442 reject_low 266 ALIGNMENT 0 Y12-9i08.q1k chr06 479 866 3046 3045 F 388 0.00 1329 reject_low 342 ALIGNMENT 33 Y12-9i08.p1k chr05 319 384 574893 574958 F 66 84.85 1442 reject_low 301 ALIGNMENT 0 Y12-9i08.p1k chr12 62 318 1069602 1069601 F 257 0.00 1442 reject_low 304 ALIGNMENT 0 Y12-9i08.p1k chr16 842 384 1520 1519 C 459 0.00 1442 reject_low 39 ALIGNMENT 238 Y12-9i08.p1k chr04 26 383 1530095 1530452 F 358 90.50 1442 reject_low 40 ALIGNMENT 43 Y12-9i08.p1k chr13 372 305 2002 2069 C 68 89.71 1442 reject_low 288 ALIGNMENT 0 Y12-9i08.p1k chr10 842 373 1933 1932 C 470 0.00 1442 reject_low 133 ALIGNMENT 24 Y12-9i08.q1k chr02 330 359 4108 4137 F 30 93.33 1329 reject_low 341 ALIGNMENT 205 Y12-9i08.p1k chr10 383 26 1705 2062 C 358 87.43 1442 reject_low 61 ALIGNMENT 0 Y12-9i08.p1k chr09 128 62 2229 2228 C 67 0.00 1442 reject_low 128 ALIGNMENT 0 Y12-9i08.q1k chr12 610 596 1067129 1067124 C 15 0.00 1329 reject_low 9 ALIGNMENT 0 Y12-9i08.p1k chr12 204 210 1070027 1076264 F 7 0.00 1442 reject_low 327 ALIGNMENT 52 Y12-9i08.q1k chr12 200 255 3832 3887 F 56 98.21 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340,345 ALIGNMENT 117 Y12-9i08.p1k chr12 67 380 1076265 1076578 F 314 80.89 1442 reject_low 153 ALIGNMENT 0 Y12-9i08.p1k chr15 381 842 1089506 1089505 F 462 0.00 1442 reject_low 199 ALIGNMENT 241 Y12-9i08.p1k chr05 26 383 574924 575281 F 358 90.78 1442 reject_low 35 ALIGNMENT 52 Y12-9i08.p1k chr10 383 281 2101 2203 C 103 85.44 1442 reject_low 275 ALIGNMENT 0 Y12-9i08.p1k chr16 174 62 1908 1907 C 113 0.00 1442 reject_low 217 ALIGNMENT 71 Y12-9i08.p1k chr08 167 22 1651 1796 C 146 83.56 1442 reject_low 219 ALIGNMENT 87 Y12-9i08.p1k chr05 203 30 1470 1643 C 174 84.48 1442 reject_low 200 ALIGNMENT 883 Y12-9i08.p1k chr15 22 1156 1089292 1090438 F 1135 93.39 1442 reject_low 22 ALIGNMENT 57 Y12-9i08.p1k chr02 384 241 1881 2024 C 144 81.94 1442 reject_low 266 ALIGNMENT 0 Y12-9i08.q1k chr12 479 866 9544 9543 F 388 0.00 1329 reject_low 345 ALIGNMENT 167 Y12-9i08.p1k chr12 347 22 1683 2008 C 326 85.28 1442 reject_low 100 ALIGNMENT 170 Y12-9i08.p1k chr16 22 347 946169 946494 F 326 85.58 1442 reject_low 93 ALIGNMENT 33 Y12-9i08.p1k chr15 319 384 1089229 1089294 F 66 84.85 1442 reject_low 308 ALIGNMENT 0 Y12-9i08.p1k chr09 164 62 2229 2228 C 103 0.00 1442 reject_low 181 ALIGNMENT 176 Y12-9i08.p1k chr13 347 22 1667 1992 C 326 86.20 1442 reject_low 74 ALIGNMENT 64 Y12-9i08.p1k chr12 384 211 2042 2215 C 174 81.03 1442 reject_low 326 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 1778 1777 C 459 0.00 1442 reject_low 69 ALIGNMENT 0 Y12-9i08.p1k chr14 842 373 1910 1909 C 470 0.00 1442 reject_low 289 ALIGNMENT 0 Y12-9i08.p1k chr16 168 842 946494 946493 F 675 0.00 1442 reject_low 259 ALIGNMENT 0 Y12-9i08.p1k chr13 842 312 1668 1667 C 531 0.00 1442 reject_low 88 ALIGNMENT 98 Y12-9i08.p1k chr04 128 380 1530089 1530341 F 253 81.82 1442 reject_low 196 ALIGNMENT 0 Y12-9i08.p1k chr10 842 312 1670 1669 C 531 0.00 1442 reject_low 50 ALIGNMENT 0 Y12-9i08.p1k chr08 240 842 560841 560840 F 603 0.00 1442 reject_low 159 ALIGNMENT 0 Y12-9i08.p1k chr06 842 385 1073 1072 C 458 0.00 1442 reject_low 314 ALIGNMENT 0 Y12-9i08.p1k chr08 137 62 1933 1932 C 76 0.00 1442 reject_low 204 ALIGNMENT 141 Y12-9i08.p1k chr08 26 275 560592 560841 F 250 86.80 1442 reject_low 126 ALIGNMENT 0 Y12-9i08.p1k chr16 385 842 946027 946026 F 458 0.00 1442 reject_low 310 ALIGNMENT 66 Y12-9i08.p1k chr13 203 30 1667 1840 C 174 80.46 1442 reject_low 231 ALIGNMENT 123 Y12-9i08.p1k chr12 380 67 1902 2215 C 314 81.53 1442 reject_low 144 ALIGNMENT 0 Y12-9i08.p1k chr13 842 384 1848 1847 C 459 0.00 1442 reject_low 177 ALIGNMENT 0 Y12-9i08.p1k chr10 842 204 1670 1669 C 639 0.00 1442 reject_low 202 ALIGNMENT 0 Y12-9i08.p1k chr12 842 385 2043 2042 C 458 0.00 1442 reject_low 326 ALIGNMENT 98 Y12-9i08.p1k chr15 128 380 1089254 1089506 F 253 81.82 1442 reject_low 199 ALIGNMENT 176 Y12-9i08.p1k chr14 347 22 1574 1899 C 326 86.20 1442 reject_low 75 ALIGNMENT 0 Y12-9i08.q1k chr12 360 421 3937 3952 F 62 0.00 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340 ALIGNMENT 0 Y12-9i08.p1k chr14 842 348 1575 1574 C 495 0.00 1442 reject_low 75 ALIGNMENT 176 Y12-9i08.p1k chr07 22 347 1089069 1089394 F 326 86.20 1442 reject_low 73 ALIGNMENT 43 Y12-9i08.p1k chr02 383 277 1918 2024 C 107 82.24 1442 reject_low 282 ALIGNMENT 0 Y12-9i08.q1k chr06 256 276 2925 2914 F 21 0.00 1329 reject_low 342 ALIGNMENT 0 Y12-9i08.p1k chr05 385 842 574958 574957 F 458 0.00 1442 reject_low 301 ALIGNMENT 0 Y12-9i08.p1k chr05 384 842 575137 575136 F 459 0.00 1442 reject_low 174 ALIGNMENT 39 Y12-9i08.p1k chr09 372 309 2165 2228 C 64 89.06 1442 reject_low 298 ALIGNMENT 101 Y12-9i08.p1k chr13 380 128 1814 2066 C 253 82.21 1442 reject_low 185 ALIGNMENT 0 Y12-9i08.p1k chr12 304 62 7729 7728 C 243 0.00 1442 reject_low 339 ALIGNMENT 0 Y12-9i08.p1k chr13 842 276 1668 1667 C 567 0.00 1442 reject_low 112 ALIGNMENT 34 Y12-9i08.p1k chr09 136 26 1681 1791 C 111 77.48 1442 reject_low 295 ALIGNMENT 0 Y12-9i08.p1k chr05 62 127 574918 574917 F 66 0.00 1442 reject_low 182 ALIGNMENT 0 Y12-9i08.p1k chr13 842 385 1919 1918 C 458 0.00 1442 reject_low 244 ALIGNMENT 894 Y12-9i08.p1k chr09 1156 30 901 2039 C 1127 93.88 1442 reject_low 16 ALIGNMENT 0 Y12-9i08.p1k chr14 127 62 1974 1973 C 66 0.00 1442 reject_low 186 ALIGNMENT 43 Y12-9i08.p1k chr12 305 372 1076287 1076354 F 68 89.71 1442|4,0 reject_low 319 ALIGNMENT 0 Y12-9i08.p1k chr16 62 304 945984 945983 F 243 0.00 1442 reject_low 292 ALIGNMENT 56 Y12-9i08.p1k chr13 167 30 1667 1804 C 138 81.16 1442 reject_low 255 ALIGNMENT 0 Y12-9i08.p1k chr12 842 373 2127 2126 C 470 0.00 1442 reject_low 318 ALIGNMENT 102 Y12-9i08.p1k chr12 383 139 1971 2215 C 245 82.86 1442 reject_low 176 ALIGNMENT 0 Y12-9i08.p1k chr06 842 373 1049 1048 C 470 0.00 1442 reject_low 280 ALIGNMENT 101 Y12-9i08.p1k chr07 128 380 1088995 1089247 F 253 82.21 1442 reject_low 183 ALIGNMENT 102 Y12-9i08.p1k chr13 383 139 1847 2091 C 245 82.86 1442 reject_low 177 ALIGNMENT 174 Y12-9i08.p1k chr15 26 311 1089368 1089653 F 286 88.46 1442 reject_low 90 ALIGNMENT 43 Y12-9i08.p1k chr16 372 305 1818 1885 C 68 89.71 1442 reject_low 291 ALIGNMENT 0 Y12-9i08.p1k chr06 842 312 894 893 C 531 0.00 1442 reject_low 328 ALIGNMENT 957 Y12-9i08.q1k chr14 34 1158 3913 5050 F 1125 95.73 1329 reject_low 7 ALIGNMENT 72 Y12-9i08.p1k chr05 372 138 1805 2039 C 235 79.15 1442 reject_low 236 ALIGNMENT 90 Y12-9i08.p1k chr14 372 175 1801 1998 C 198 83.84 1442 reject_low 216 ALIGNMENT 185 Y12-9i08.p1k chr16 31 372 945962 946303 F 342 86.26 1442 reject_low 70 ALIGNMENT 66 Y12-9i08.p1k chr15 30 203 1089480 1089653 F 174 80.46 1442 reject_low 233 ALIGNMENT 104 Y12-9i08.p1k chr09 372 165 2021 2228 C 208 85.58 1442 reject_low 181 ALIGNMENT 0 Y12-9i08.p1k chr15 373 842 1089318 1089317 F 470 0.00 1442 reject_low 290 ALIGNMENT 0 Y12-9i08.p1k chr02 842 348 1487 1486 C 495 0.00 1442 reject_low 124 ALIGNMENT 975 Y12-9i08.q1k chr15 1158 34 1086177 1087314 C 1125 96.27 1329 reject_low 4 ALIGNMENT 119 Y12-9i08.p1k chr06 239 26 893 1106 C 214 86.45 1442 reject_low 137 ALIGNMENT 0 Y12-9i08.p1k chr14 842 385 1934 1933 C 458 0.00 1442 reject_low 307 ALIGNMENT 0 Y12-9i08.p1k chr14 842 204 1575 1574 C 639 0.00 1442 reject_low 232 ALIGNMENT 32 Y12-9i08.p1k chr08 384 329 1866 1921 C 56 87.50 1442 reject_low 311 ALIGNMENT 112 Y12-9i08.p1k chr02 380 66 1705 2019 C 315 80.32 1442 reject_low 165 ALIGNMENT 210 Y12-9i08.p1k chr12 383 22 1755 2116 C 362 87.57 1442 reject_low 54 ALIGNMENT 0 Y12-9i08.p1k chr16 62 210 945962 945961 F 149 0.00 1442 reject_low 247 ALIGNMENT 105 Y12-9i08.p1k chr12 22 239 1076472 1076689 F 218 83.94 1442 reject_low 160 ALIGNMENT 226 Y12-9i08.p1k chr16 26 383 946101 946458 F 358 89.39 1442 reject_low 45 ALIGNMENT 0 Y12-9i08.p1k chr14 842 385 1826 1825 C 458 0.00 1442 reject_low 245 ALIGNMENT 151 Y12-9i08.p1k chr15 22 275 1089400 1089653 F 254 87.80 1442 reject_low 114 ALIGNMENT 0 Y12-9i08.p1k chr05 240 842 575317 575316 F 603 0.00 1442 reject_low 157 ALIGNMENT 0 Y12-9i08.p1k chr05 842 168 1471 1470 C 675 0.00 1442 reject_low 225 ALIGNMENT 0 Y12-9i08.p1k chr12 276 842 1076689 1076688 F 567 0.00 1442 reject_low 111 ALIGNMENT 0 Y12-9i08.p1k chr09 842 385 2190 2189 C 458 0.00 1442 reject_low 313 ALIGNMENT 0 Y12-9i08.p1k chr12 842 168 1684 1683 C 675 0.00 1442 reject_low 253 ALIGNMENT 0 Y12-9i08.p1k chr12 842 373 7662 7661 C 470 0.00 1442 reject_low 339 ALIGNMENT 957 Y12-9i08.q1k chr05 1158 34 571841 572978 C 1125 95.73 1329 reject_low 5 ALIGNMENT 0 Y12-9i08.p1k chr09 842 389 1898 1897 C 454 0.00 1442 reject_low 57 ALIGNMENT 55 Y12-9i08.p1k chr09 383 273 2118 2228 C 111 85.59 1442 reject_low 267 ALIGNMENT 0 Y12-9i08.p1k chr16 842 373 1819 1818 C 470 0.00 1442 reject_low 291 ALIGNMENT 0 Y12-9i08.p1k chr12 318 62 7751 7750 C 257 0.00 1442 reject_low 340 ALIGNMENT 0 Y12-9i08.p1k chr14 842 384 1755 1754 C 459 0.00 1442 reject_low 178 ALIGNMENT 43 Y12-9i08.p1k chr05 305 372 574915 574982 F 68 89.71 1442 reject_low 285 ALIGNMENT 0 Y12-9i08.p1k chr02 842 384 1523 1522 C 459 0.00 1442 reject_low 29 ALIGNMENT 0 Y12-9i08.q1k chr02 310 329 4112 4107 F 20 0.00 1329 reject_low 341 ALIGNMENT 0 Y12-9i08.p1k chr04 62 304 1530086 1530085 F 243 0.00 1442 reject_low 284 ALIGNMENT 0 Y12-9i08.p1k chr10 135 62 2205 2204 C 74 0.00 1442 reject_low 130 ALIGNMENT 101 Y12-9i08.p1k chr16 380 128 1630 1882 C 253 82.21 1442 reject_low 187 ALIGNMENT 117 Y12-9i08.p1k chr09 239 30 1686 1895 C 210 86.67 1442 reject_low 141 ALIGNMENT 152 Y12-9i08.p1k chr08 30 311 560560 560841 F 282 86.17 1442 reject_low 121 ALIGNMENT 0 Y12-9i08.p1k chr09 842 240 1687 1686 C 603 0.00 1442 reject_low 141 ALIGNMENT 101 Y12-9i08.p1k chr14 380 128 1721 1973 C 253 82.21 1442 reject_low 186 ALIGNMENT 0 Y12-9i08.p1k chr07 62 174 1088970 1088969 F 113 0.00 1442 reject_low 214 ALIGNMENT 0 Y12-9i08.p1k chr14 842 373 1802 1801 C 470 0.00 1442 reject_low 216 ALIGNMENT 0 Y12-9i08.p1k chr13 842 204 1668 1667 C 639 0.00 1442 reject_low 231 ALIGNMENT 0 Y12-9i08.p1k chr08 842 385 1867 1866 C 458 0.00 1442 reject_low 311 ALIGNMENT 0 Y12-9i08.p1k chr14 318 62 1999 1998 C 257 0.00 1442 reject_low 307 ALIGNMENT 0 Y12-9i08.p1k chr15 312 842 1089653 1089652 F 531 0.00 1442 reject_low 90 ALIGNMENT 0 Y12-9i08.p1k chr09 842 137 1682 1681 C 706 0.00 1442 reject_low 295 ALIGNMENT 192 Y12-9i08.p1k chr16 22 383 946025 946386 F 362 85.91 1442 reject_low 62 ALIGNMENT 55 Y12-9i08.p1k chr07 269 383 1088992 1089106 F 115 85.22 1442 reject_low 269 ALIGNMENT 359 Y12-9i08.q1k chr05 702 1158 4586 5054 F 457 94.09 1329 reject_low 10 ALIGNMENT 0 Y12-9i08.p1k chr05 312 842 575317 575316 F 531 0.00 1442 reject_low 85 ALIGNMENT 0 Y12-9i08.p1k chr02 842 384 1631 1630 C 459 0.00 1442 reject_low 77 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1507 1506 C 459 0.00 1442 reject_low 33 ALIGNMENT 120 Y12-9i08.p1k chr05 67 380 574893 575206 F 314 81.21 1442 reject_low 145 ALIGNMENT 0 Y12-9i08.p1k chr12 348 842 1070026 1070025 F 495 0.00 1442 reject_low 81 ALIGNMENT 0 Y12-9i08.p1k chr04 62 174 1530064 1530063 F 113 0.00 1442 reject_low 221 ALIGNMENT 152 Y12-9i08.p1k chr16 30 311 946213 946494 F 282 86.17 1442 reject_low 122 ALIGNMENT 125 Y12-9i08.p1k chr16 67 383 945962 946278 F 317 81.70 1442 reject_low 140 ALIGNMENT 33 Y12-9i08.p1k chr12 319 384 1076265 1076330 F 66 84.85 1442 reject_low 305 ALIGNMENT 0 Y12-9i08.q1k chr13 479 866 3885 3884 F 388 0.00 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr14 842 312 1575 1574 C 531 0.00 1442 reject_low 89 ALIGNMENT 0 Y12-9i08.p1k chr15 384 842 1089581 1089580 F 459 0.00 1442 reject_low 104 ALIGNMENT 30 Y12-9i08.p1k chr05 384 231 1901 2054 C 154 75.32 1442 reject_low 316 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 1759 1758 C 459 0.00 1442 reject_low 78 ALIGNMENT 63 Y12-9i08.p1k chr08 211 383 560417 560589 F 173 80.92 1442 reject_low 261 ALIGNMENT 0 Y12-9i08.p1k chr05 381 842 575170 575169 F 462 0.00 1442 reject_low 182 ALIGNMENT 0 Y12-9i08.p1k chr04 384 842 1530416 1530415 F 459 0.00 1442 reject_low 101 ALIGNMENT 0 Y12-9i08.p1k chr06 842 373 977 976 C 470 0.00 1442 reject_low 237 ALIGNMENT 0 Y12-9i08.p1k chr09 842 373 1950 1949 C 470 0.00 1442 reject_low 131 ALIGNMENT 0 Y12-9i08.q1k chr12 256 276 3888 3877 F 21 0.00 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340,345 ALIGNMENT 102 Y12-9i08.p1k chr12 383 139 7506 7750 C 245 82.86 1442 reject_low 334 ALIGNMENT 129 Y12-9i08.p1k chr08 311 62 1651 1900 C 250 85.60 1442 reject_low 136 ALIGNMENT 0 Y12-9i08.p1k chr16 842 381 1595 1594 C 462 0.00 1442 reject_low 149 ALIGNMENT 0 Y12-9i08.p1k chr14 210 62 1999 1998 C 149 0.00 1442 reject_low 245 ALIGNMENT 0 Y12-9i08.p1k chr08 62 127 560442 560441 F 66 0.00 1442 reject_low 168 ALIGNMENT 83 Y12-9i08.p1k chr02 203 22 1486 1667 C 182 82.97 1442 reject_low 203 ALIGNMENT 0 Y12-9i08.q1k chr08 329 310 558724 558719 C 20 0.00 1329 reject_low 344 ALIGNMENT 176 Y12-9i08.p1k chr12 347 22 7326 7651 C 326 86.20 1442 reject_low 331 ALIGNMENT 33 Y12-9i08.p1k chr13 384 319 2026 2091 C 66 84.85 1442 reject_low 306 ALIGNMENT 0 Y12-9i08.p1k chr16 373 842 946051 946050 F 470 0.00 1442 reject_low 292 ALIGNMENT 101 Y12-9i08.p1k chr12 380 128 1938 2190 C 253 82.21 1442 reject_low 184 ALIGNMENT 117 Y12-9i08.p1k chr10 239 30 1669 1878 C 210 86.67 1442 reject_low 142 ALIGNMENT 0 Y12-9i08.p1k chr16 276 842 946494 946493 F 567 0.00 1442 reject_low 107 ALIGNMENT 102 Y12-9i08.p1k chr14 383 139 1754 1998 C 245 82.86 1442 reject_low 178 ALIGNMENT 105 Y12-9i08.p1k chr14 239 22 1574 1791 C 218 83.94 1442 reject_low 162 ALIGNMENT 87 Y12-9i08.p1k chr12 175 372 1076265 1076462 F 198 83.33 1442 reject_low 325 ALIGNMENT 56 Y12-9i08.p1k chr15 30 167 1089516 1089653 F 138 81.16 1442 reject_low 257 ALIGNMENT 957 Y12-9i08.q1k chr16 34 1158 3822 4959 F 1125 95.73 1329 reject_low 8 ALIGNMENT 0 Y12-9i08.p1k chr04 381 842 1530377 1530376 F 462 0.00 1442 reject_low 151 ALIGNMENT 90 Y12-9i08.p1k chr06 275 62 893 1106 C 214 82.24 1442 reject_low 209 ALIGNMENT 0 Y12-9i08.p1k chr07 373 842 1089167 1089166 F 470 0.00 1442 reject_low 214 ALIGNMENT 0 Y12-9i08.p1k chr16 268 62 1886 1885 C 207 0.00 1442 reject_low 272 ALIGNMENT 0 Y12-9i08.p1k chr13 174 62 2092 2091 C 113 0.00 1442 reject_low 215 ALIGNMENT 0 Y12-9i08.p1k chr06 137 62 1247 1246 C 76 0.00 1442 reject_low 260 ALIGNMENT 88 Y12-9i08.p1k chr02 372 169 1821 2024 C 204 83.33 1442 reject_low 220 ALIGNMENT 0 Y12-9i08.p1k chr05 168 842 575317 575316 F 675 0.00 1442 reject_low 250 ALIGNMENT 61 Y12-9i08.p1k chr04 211 384 1530064 1530237 F 174 80.46 1442 reject_low 262 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 1742 1741 C 459 0.00 1442 reject_low 79 ALIGNMENT 0 Y12-9i08.p1k chr08 842 240 1652 1651 C 603 0.00 1442 reject_low 67 ALIGNMENT 146 Y12-9i08.p1k chr12 239 26 1683 1896 C 214 90.65 1442 reject_low 119 ALIGNMENT 0 Y12-9i08.p1k chr12 273 272 1070024 1076290 F 0 0.00 1442 reject_low 321 ALIGNMENT 0 Y12-9i08.p1k chr12 842 373 7554 7553 C 470 0.00 1442 reject_low 336 ALIGNMENT 101 Y12-9i08.p1k chr02 388 137 1769 2020 C 252 82.14 1442 reject_low 167 ALIGNMENT 238 Y12-9i08.p1k chr15 26 383 1089260 1089617 F 358 90.50 1442 reject_low 43 ALIGNMENT 87 Y12-9i08.p1k chr09 203 30 1686 1859 C 174 84.48 1442 reject_low 201 ALIGNMENT 0 Y12-9i08.p1k chr12 62 268 1069624 1069623 F 207 0.00 1442 reject_low 277 ALIGNMENT 174 Y12-9i08.p1k chr12 311 26 7326 7611 C 286 88.46 1442|3,0 reject_low 318 ALIGNMENT 0 Y12-9i08.p1k chr16 62 318 945962 945961 F 257 0.00 1442 reject_low 310 ALIGNMENT 43 Y12-9i08.p1k chr07 305 372 1088992 1089059 F 68 89.71 1442 reject_low 286 ALIGNMENT 0 Y12-9i08.p1k chr12 62 318 1076265 1076264 F 257 0.00 1442 reject_low 305 ALIGNMENT 0 Y12-9i08.p1k chr16 842 381 1631 1630 C 462 0.00 1442 reject_low 187 ALIGNMENT 105 Y12-9i08.p1k chr04 22 239 1530271 1530488 F 218 83.94 1442 reject_low 156 ALIGNMENT 0 Y12-9i08.p1k chr10 842 373 2149 2148 C 470 0.00 1442 reject_low 312 ALIGNMENT 174 Y12-9i08.p1k chr16 311 26 1483 1768 C 286 88.46 1442 reject_low 91 ALIGNMENT 0 Y12-9i08.q1k chr12 62 199 9367 9366 F 138 0.00 1329 reject_low 329 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 2030 2029 C 459 0.00 1442 reject_low 211 ALIGNMENT 173 Y12-9i08.p1k chr12 22 347 1069701 1070026 F 326 85.89 1442 reject_low 81 ALIGNMENT 53 Y12-9i08.q1k chr08 422 478 3685 3741 F 57 98.25 1329 reject_low 343 ALIGNMENT 883 Y12-9i08.p1k chr12 22 1156 1076328 1077474 F 1135 93.39 1442 reject_low 21 ALIGNMENT 0 Y12-9i08.p1k chr04 381 842 1530341 1530340 F 462 0.00 1442 reject_low 196 ALIGNMENT 0 Y12-9i08.q1k chr06 310 329 2948 2943 F 20 0.00 1329 reject_low 342 ALIGNMENT 196 Y12-9i08.p1k chr05 383 62 1614 1935 C 322 88.82 1442 reject_low 65 ALIGNMENT 178 Y12-9i08.p1k chr10 383 26 1741 2098 C 358 84.92 1442 reject_low 79 ALIGNMENT 0 Y12-9i08.p1k chr12 842 276 1684 1683 C 567 0.00 1442 reject_low 116 ALIGNMENT 151 Y12-9i08.p1k chr04 22 275 1530235 1530488 F 254 87.80 1442 reject_low 108 ALIGNMENT 0 Y12-9i08.p1k chr02 842 384 1739 1738 C 459 0.00 1442 reject_low 169 ALIGNMENT 24 Y12-9i08.q1k chr08 330 359 3639 3668 F 30 93.33 1329 reject_low 343 ALIGNMENT 29 Y12-9i08.q1k chr12 277 309 3878 3910 F 33 96.97 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340,345 ALIGNMENT 0 Y12-9i08.p1k chr12 204 842 1076689 1076688 F 639 0.00 1442 reject_low 230 ALIGNMENT 0 Y12-9i08.p1k chr16 210 62 1908 1907 C 149 0.00 1442 reject_low 246 ALIGNMENT 40 Y12-9i08.p1k chr08 372 305 1842 1909 C 68 88.24 1442 reject_low 297 ALIGNMENT 109 Y12-9i08.p1k chr02 383 128 1738 1993 C 256 83.20 1442 reject_low 169 ALIGNMENT 68 Y12-9i08.p1k chr05 383 159 1830 2054 C 225 79.11 1442 reject_low 240 ALIGNMENT 0 Y12-9i08.p1k chr15 62 210 1089229 1089228 F 149 0.00 1442 reject_low 264 ALIGNMENT 0 Y12-9i08.p1k chr08 381 842 560730 560729 F 462 0.00 1442 reject_low 135 ALIGNMENT 173 Y12-9i08.p1k chr16 383 31 1555 1907 C 353 84.70 1442 reject_low 98 ALIGNMENT 220 Y12-9i08.p1k chr09 383 26 1866 2223 C 358 88.83 1442 reject_low 51 ALIGNMENT 55 Y12-9i08.p1k chr14 383 269 1862 1976 C 115 85.22 1442 reject_low 271 ALIGNMENT 0 Y12-9i08.p1k chr16 62 174 945962 945961 F 113 0.00 1442 reject_low 218 ALIGNMENT 66 Y12-9i08.p1k chr14 203 30 1574 1747 C 174 80.46 1442 reject_low 232 ALIGNMENT 0 Y12-9i08.p1k chr09 200 62 2229 2228 C 139 0.00 1442 reject_low 205 ALIGNMENT 0 Y12-9i08.p1k chr08 312 842 560841 560840 F 531 0.00 1442 reject_low 121 ALIGNMENT 55 Y12-9i08.p1k chr12 383 269 2079 2193 C 115 85.22 1442|0,4 reject_low 320,322 ALIGNMENT 0 Y12-9i08.p1k chr10 101 62 2203 2202 C 40 0.00 1442 reject_low 133 ALIGNMENT 102 Y12-9i08.p1k chr16 383 139 1663 1907 C 245 82.86 1442 reject_low 179 ALIGNMENT 0 Y12-9i08.q1k chr12 360 866 9471 9470 F 507 0.00 1329 reject_low 329 ALIGNMENT 0 Y12-9i08.p1k chr07 381 842 1089283 1089282 F 462 0.00 1442 reject_low 146 ALIGNMENT 0 Y12-9i08.p1k chr16 240 842 946494 946493 F 603 0.00 1442 reject_low 120 ALIGNMENT 66 Y12-9i08.p1k chr16 203 30 1483 1656 C 174 80.46 1442 reject_low 234 ALIGNMENT 33 Y12-9i08.p1k chr12 384 319 2150 2215 C 66 84.85 1442 reject_low 303 ALIGNMENT 113 Y12-9i08.p1k chr08 128 380 560442 560694 F 253 83.79 1442 reject_low 168 ALIGNMENT 52 Y12-9i08.p1k chr15 269 383 1089251 1089365 F 115 84.35 1442 reject_low 278 ALIGNMENT 154 Y12-9i08.p1k chr12 275 30 1683 1928 C 246 89.02 1442 reject_low 116 ALIGNMENT 49 Y12-9i08.q1k chr13 200 255 3708 3763 F 56 96.43 1329 reject_low 347 ALIGNMENT 90 Y12-9i08.p1k chr10 383 208 2029 2204 C 176 85.80 1442 reject_low 211 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1831 1830 C 459 0.00 1442 reject_low 240 ALIGNMENT 49 Y12-9i08.p1k chr08 269 383 560439 560553 F 115 83.48 1442 reject_low 279 ALIGNMENT 0 Y12-9i08.p1k chr12 842 348 1684 1683 C 495 0.00 1442 reject_low 100 ALIGNMENT 0 Y12-9i08.p1k chr02 842 385 1882 1881 C 458 0.00 1442 reject_low 266 ALIGNMENT 0 Y12-9i08.p1k chr04 385 842 1530237 1530236 F 458 0.00 1442 reject_low 262 ALIGNMENT 105 Y12-9i08.p1k chr08 22 239 560624 560841 F 218 83.94 1442 reject_low 159 ALIGNMENT 0 Y12-9i08.p1k chr08 62 138 560417 560416 F 77 0.00 1442 reject_low 166 ALIGNMENT 0 Y12-9i08.p1k chr08 276 842 560841 560840 F 567 0.00 1442 reject_low 126 ALIGNMENT 33 Y12-9i08.p1k chr14 384 319 1933 1998 C 66 84.85 1442 reject_low 307 ALIGNMENT 0 Y12-9i08.p1k chr02 136 62 2021 2020 C 75 0.00 1442 reject_low 167 ALIGNMENT 0 Y12-9i08.p1k chr12 127 62 2191 2190 C 66 0.00 1442 reject_low 184 ALIGNMENT 56 Y12-9i08.p1k chr08 30 167 560704 560841 F 138 81.16 1442 reject_low 252 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1579 1578 C 459 0.00 1442 reject_low 46 ALIGNMENT 0 Y12-9i08.p1k chr05 62 304 574915 574914 F 243 0.00 1442 reject_low 285 ALIGNMENT 263 Y12-9i08.p1k chr10 347 22 1669 1994 C 326 95.09 1442 reject_low 31 ALIGNMENT 0 Y12-9i08.p1k chr05 194 62 2055 2054 C 133 0.00 1442 reject_low 281 ALIGNMENT 66 Y12-9i08.p1k chr05 30 203 575144 575317 F 174 80.46 1442 reject_low 227 ALIGNMENT 64 Y12-9i08.p1k chr14 384 211 1825 1998 C 174 81.03 1442 reject_low 245 ALIGNMENT 55 Y12-9i08.p1k chr13 383 269 1955 2069 C 115 85.22 1442 reject_low 270 ALIGNMENT 0 Y12-9i08.q1k chr12 310 329 3911 3906 F 20 0.00 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340,345 ALIGNMENT 0 Y12-9i08.p1k chr16 381 842 946239 946238 F 462 0.00 1442 reject_low 188 ALIGNMENT 36 Y12-9i08.p1k chr10 372 317 2148 2203 C 56 89.29 1442 reject_low 312 ALIGNMENT 0 Y12-9i08.p1k chr15 384 842 1089617 1089616 F 459 0.00 1442 reject_low 43 ALIGNMENT 0 Y12-9i08.p1k chr15 385 842 1089294 1089293 F 458 0.00 1442 reject_low 308 ALIGNMENT 0 Y12-9i08.p1k chr09 308 62 2229 2228 C 247 0.00 1442 reject_low 298 ALIGNMENT 29 Y12-9i08.q1k chr05 611 645 4555 4589 F 35 94.29 1329 reject_low 10 ALIGNMENT 0 Y12-9i08.p1k chr05 137 62 2040 2039 C 76 0.00 1442 reject_low 236 ALIGNMENT 0 Y12-9i08.p1k chr07 62 127 1088995 1088994 F 66 0.00 1442 reject_low 183 ALIGNMENT 55 Y12-9i08.p1k chr12 383 269 7614 7728 C 115 85.22 1442 reject_low 338 ALIGNMENT 101 Y12-9i08.p1k chr05 128 380 574918 575170 F 253 82.21 1442 reject_low 182 ALIGNMENT 76 Y12-9i08.p1k chr08 383 174 1723 1932 C 210 80.95 1442 reject_low 224 ALIGNMENT 0 Y12-9i08.p1k chr02 842 381 1598 1597 C 462 0.00 1442 reject_low 66 ALIGNMENT 0 Y12-9i08.p1k chr16 312 842 946494 946493 F 531 0.00 1442 reject_low 122 ALIGNMENT 0 Y12-9i08.p1k chr04 62 210 1530064 1530063 F 149 0.00 1442 reject_low 262 ALIGNMENT 0 Y12-9i08.p1k chr16 842 312 1484 1483 C 531 0.00 1442 reject_low 91 ALIGNMENT 0 Y12-9i08.p1k chr05 842 312 1471 1470 C 531 0.00 1442 reject_low 132 ALIGNMENT 238 Y12-9i08.p1k chr12 26 383 1069633 1069990 F 358 90.50 1442 reject_low 41 ALIGNMENT 0 Y12-9i08.q1k chr13 360 421 3813 3828 F 62 0.00 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr08 373 842 560470 560469 F 470 0.00 1442 reject_low 315 ALIGNMENT 43 Y12-9i08.p1k chr04 305 372 1530086 1530153 F 68 89.71 1442 reject_low 284 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1076401 1076400 F 459 0.00 1442 reject_low 321,323 ALIGNMENT 0 Y12-9i08.p1k chr05 204 842 575317 575316 F 639 0.00 1442 reject_low 227 ALIGNMENT 0 Y12-9i08.p1k chr02 842 204 1487 1486 C 639 0.00 1442 reject_low 203 ALIGNMENT 0 Y12-9i08.p1k chr16 842 168 1484 1483 C 675 0.00 1442 reject_low 258 ALIGNMENT 97 Y12-9i08.p1k chr05 383 83 1758 2058 C 301 79.40 1442 reject_low 189 ALIGNMENT 0 Y12-9i08.p1k chr14 842 240 1575 1574 C 603 0.00 1442 reject_low 162 ALIGNMENT 883 Y12-9i08.p1k chr16 1156 22 698 1844 C 1135 93.30 1442 reject_low 23 ALIGNMENT 0 Y12-9i08.p1k chr06 842 61 893 892 C 782 0.00 1442 reject_low 283 ALIGNMENT 0 Y12-9i08.p1k chr12 385 842 1076330 1076329 F 458 0.00 1442 reject_low 305 ALIGNMENT 140 Y12-9i08.p1k chr10 372 102 1932 2202 C 271 85.98 1442 reject_low 133 ALIGNMENT 117 Y12-9i08.p1k chr12 67 380 1069602 1069915 F 314 80.89 1442 reject_low 152 ALIGNMENT 0 Y12-9i08.p1k chr08 62 268 560439 560438 F 207 0.00 1442 reject_low 279 ALIGNMENT 0 Y12-9i08.p1k chr04 384 842 1530452 1530451 F 459 0.00 1442 reject_low 40 ALIGNMENT 0 Y12-9i08.p1k chr10 351 62 2205 2204 C 290 0.00 1442 reject_low 317 ALIGNMENT 52 Y12-9i08.q1k chr02 200 255 4033 4088 F 56 98.21 1329 reject_low 341 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1076653 1076652 F 459 0.00 1442 reject_low 42 ALIGNMENT 43 Y12-9i08.p1k chr16 305 372 945984 946051 F 68 89.71 1442 reject_low 292 ALIGNMENT 0 Y12-9i08.p1k chr02 127 62 1994 1993 C 66 0.00 1442 reject_low 169 ALIGNMENT 0 Y12-9i08.p1k chr05 842 276 1471 1470 C 567 0.00 1442 reject_low 139 ALIGNMENT 0 Y12-9i08.p1k chr05 62 210 574893 574892 F 149 0.00 1442 reject_low 242 ALIGNMENT 0 Y12-9i08.p1k chr12 385 842 1069667 1069666 F 458 0.00 1442 reject_low 304 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 1972 1971 C 459 0.00 1442 reject_low 176 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 7399 7398 C 459 0.00 1442 reject_low 332 ALIGNMENT 0 Y12-9i08.p1k chr02 842 168 1487 1486 C 675 0.00 1442 reject_low 248 ALIGNMENT 135 Y12-9i08.p1k chr05 383 22 1650 2011 C 362 80.66 1442 reject_low 129 ALIGNMENT 157 Y12-9i08.p1k chr16 30 275 946249 946494 F 246 89.43 1442 reject_low 107 ALIGNMENT 65 Y12-9i08.p1k chr05 167 30 1470 1607 C 138 83.33 1442 reject_low 225 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1543 1542 C 459 0.00 1442 reject_low 34 ALIGNMENT 0 Y12-9i08.p1k chr05 82 62 2059 2058 C 21 0.00 1442 reject_low 189 ALIGNMENT 99 Y12-9i08.p1k chr12 139 383 1069602 1069846 F 245 82.45 1442 reject_low 191 ALIGNMENT 0 Y12-9i08.p1k chr10 316 62 2204 2203 C 255 0.00 1442 reject_low 312 ALIGNMENT 0 Y12-9i08.p1k chr08 62 174 560417 560416 F 113 0.00 1442 reject_low 210 ALIGNMENT 0 Y12-9i08.p1k chr08 381 842 560694 560693 F 462 0.00 1442 reject_low 168 ALIGNMENT 0 Y12-9i08.p1k chr12 174 168 2216 7325 C 7 0.00 1442 reject_low 324 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946206 946205 F 459 0.00 1442 reject_low 180 ALIGNMENT 0 Y12-9i08.p1k chr06 82 62 1266 1265 C 21 0.00 1442 reject_low 237 ALIGNMENT 0 Y12-9i08.p1k chr07 385 842 1089143 1089142 F 458 0.00 1442 reject_low 243 ALIGNMENT 56 Y12-9i08.p1k chr02 167 30 1486 1623 C 138 81.16 1442 reject_low 248 ALIGNMENT 64 Y12-9i08.p1k chr16 384 211 1734 1907 C 174 81.03 1442 reject_low 246 ALIGNMENT 0 Y12-9i08.p1k chr04 373 842 1530261 1530260 F 470 0.00 1442 reject_low 221 ALIGNMENT 65 Y12-9i08.p1k chr09 383 237 2082 2228 C 147 83.67 1442 reject_low 241 ALIGNMENT 55 Y12-9i08.p1k chr16 383 269 1771 1885 C 115 85.22 1442 reject_low 272 ALIGNMENT 0 Y12-9i08.p1k chr12 312 842 1076689 1076688 F 531 0.00 1442 reject_low 87 ALIGNMENT 174 Y12-9i08.p1k chr12 26 311 1076404 1076689 F 286 88.46 1442 reject_low 87 ALIGNMENT 0 Y12-9i08.q1k chr02 256 276 4089 4078 F 21 0.00 1329 reject_low 341 ALIGNMENT 226 Y12-9i08.p1k chr16 26 383 945993 946350 F 358 89.39 1442 reject_low 44 ALIGNMENT 87 Y12-9i08.p1k chr15 175 372 1089229 1089426 F 198 83.33 1442 reject_low 223 ALIGNMENT 0 Y12-9i08.p1k chr12 842 381 1939 1938 C 462 0.00 1442 reject_low 184 ALIGNMENT 130 Y12-9i08.p1k chr02 275 30 1486 1731 C 246 85.77 1442 reject_low 134 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946278 946277 F 459 0.00 1442 reject_low 140 ALIGNMENT 0 Y12-9i08.q1k chr08 866 479 558622 558621 C 388 0.00 1329 reject_low 344 ALIGNMENT 0 Y12-9i08.q1k chr12 62 199 3832 3831 F 138 0.00 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340,345 ALIGNMENT 0 Y12-9i08.p1k chr10 244 62 2204 2203 C 183 0.00 1442 reject_low 265 ALIGNMENT 0 Y12-9i08.p1k chr12 842 240 1684 1683 C 603 0.00 1442 reject_low 119 ALIGNMENT 0 Y12-9i08.p1k chr08 842 204 1652 1651 C 639 0.00 1442 reject_low 127 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1723 1722 C 459 0.00 1442 reject_low 143 ALIGNMENT 56 Y12-9i08.p1k chr12 30 167 1069889 1070026 F 138 81.16 1442 reject_low 325 ALIGNMENT 170 Y12-9i08.p1k chr04 31 383 1530064 1530416 F 353 84.42 1442 reject_low 101 ALIGNMENT 0 Y12-9i08.p1k chr10 842 389 1881 1880 C 454 0.00 1442 reject_low 58 ALIGNMENT 0 Y12-9i08.p1k chr07 62 318 1088970 1088969 F 257 0.00 1442 reject_low 302 ALIGNMENT 52 Y12-9i08.q1k chr12 200 255 9367 9422 F 56 98.21 1329 reject_low 329 ALIGNMENT 0 Y12-9i08.p1k chr04 312 842 1530488 1530487 F 531 0.00 1442 reject_low 84 ALIGNMENT 0 Y12-9i08.p1k chr12 240 842 1076689 1076688 F 603 0.00 1442 reject_low 160 ALIGNMENT 132 Y12-9i08.p1k chr05 311 26 1470 1755 C 286 83.57 1442 reject_low 132 ALIGNMENT 0 Y12-9i08.p1k chr08 842 348 1652 1651 C 495 0.00 1442 reject_low 206 ALIGNMENT 0 Y12-9i08.p1k chr13 842 348 1668 1667 C 495 0.00 1442 reject_low 74 ALIGNMENT 87 Y12-9i08.p1k chr04 175 372 1530064 1530261 F 198 83.33 1442 reject_low 221 ALIGNMENT 0 Y12-9i08.p1k chr08 842 373 1807 1806 C 470 0.00 1442 reject_low 293 ALIGNMENT 0 Y12-9i08.p1k chr05 842 373 1878 1877 C 470 0.00 1442 reject_low 281 ALIGNMENT 0 Y12-9i08.p1k chr09 842 348 1687 1686 C 495 0.00 1442 reject_low 30 ALIGNMENT 174 Y12-9i08.p1k chr04 26 311 1530203 1530488 F 286 88.46 1442 reject_low 84 ALIGNMENT 0 Y12-9i08.p1k chr04 62 138 1530064 1530063 F 77 0.00 1442 reject_low 190 ALIGNMENT 152 Y12-9i08.p1k chr08 22 347 560516 560841 F 326 83.74 1442 reject_low 117 ALIGNMENT 0 Y12-9i08.p1k chr07 276 842 1089394 1089393 F 567 0.00 1442 reject_low 110 ALIGNMENT 0 Y12-9i08.q1k chr08 421 360 558678 558693 C 62 0.00 1329 reject_low 344 ALIGNMENT 173 Y12-9i08.p1k chr05 31 383 574893 575245 F 353 84.70 1442 reject_low 94 ALIGNMENT 489 Y12-9i08.q1k chr05 34 595 3977 4558 F 562 96.09 1329 reject_low 10 ALIGNMENT 0 Y12-9i08.p1k chr09 842 204 1687 1686 C 639 0.00 1442 reject_low 201 ALIGNMENT 222 Y12-9i08.p1k chr10 311 26 1669 1954 C 286 94.06 1442 reject_low 50 ALIGNMENT 0 Y12-9i08.p1k chr16 842 276 1484 1483 C 567 0.00 1442 reject_low 115 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 2066 2065 C 459 0.00 1442 reject_low 265 ALIGNMENT 0 Y12-9i08.p1k chr12 373 842 1076462 1076461 F 470 0.00 1442 reject_low 325 ALIGNMENT 24 Y12-9i08.q1k chr12 330 359 3907 3936 F 30 93.33 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340,345 ALIGNMENT 0 Y12-9i08.p1k chr09 842 312 1687 1686 C 531 0.00 1442 reject_low 49 ALIGNMENT 0 Y12-9i08.p1k chr16 842 384 1772 1771 C 459 0.00 1442 reject_low 272 ALIGNMENT 29 Y12-9i08.q1k chr06 277 309 2915 2947 F 33 96.97 1329 reject_low 342 ALIGNMENT 102 Y12-9i08.p1k chr16 139 383 945962 946206 F 245 82.86 1442 reject_low 180 ALIGNMENT 975 Y12-9i08.q1k chr12 1158 34 1073213 1074350 C 1125 96.27 1329 accept_tel 0 ALIGNMENT 29 Y12-9i08.q1k chr13 277 309 3754 3786 F 33 96.97 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr16 318 62 1908 1907 C 257 0.00 1442 reject_low 309 ALIGNMENT 223 Y12-9i08.p1k chr12 383 26 1827 2184 C 358 89.11 1442 reject_low 48 ALIGNMENT 240 Y12-9i08.p1k chr05 383 22 1542 1903 C 362 90.33 1442 reject_low 34 ALIGNMENT 177 Y12-9i08.p1k chr08 239 22 1651 1868 C 218 94.95 1442 reject_low 67 ALIGNMENT 0 Y12-9i08.p1k chr07 373 842 1089059 1089058 F 470 0.00 1442 reject_low 286 ALIGNMENT 0 Y12-9i08.p1k chr05 373 842 574982 574981 F 470 0.00 1442 reject_low 285 ALIGNMENT 0 Y12-9i08.p1k chr08 62 210 560417 560416 F 149 0.00 1442 reject_low 261 ALIGNMENT 0 Y12-9i08.p1k chr12 842 373 1875 1874 C 470 0.00 1442 reject_low 71 ALIGNMENT 33 Y12-9i08.p1k chr12 384 319 7685 7750 C 66 84.85 1442 reject_low 340 ALIGNMENT 105 Y12-9i08.p1k chr05 22 239 575100 575317 F 218 83.94 1442 reject_low 157 ALIGNMENT 0 Y12-9i08.p1k chr09 236 62 2229 2228 C 175 0.00 1442 reject_low 241 ALIGNMENT 61 Y12-9i08.p1k chr12 211 384 1069602 1069775 F 174 80.46 1442 reject_low 263 ALIGNMENT 90 Y12-9i08.p1k chr07 175 372 1088970 1089167 F 198 83.84 1442 reject_low 214 ALIGNMENT 151 Y12-9i08.p1k chr16 275 22 1483 1736 C 254 87.80 1442 reject_low 115 ALIGNMENT 61 Y12-9i08.p1k chr10 383 245 2065 2203 C 139 83.45 1442 reject_low 265 ALIGNMENT 0 Y12-9i08.p1k chr02 842 312 1487 1486 C 531 0.00 1442 reject_low 155 ALIGNMENT 58 Y12-9i08.p1k chr10 167 26 1669 1810 C 142 80.99 1442 reject_low 239 ALIGNMENT 186 Y12-9i08.p1k chr02 380 22 1597 1955 C 359 85.52 1442 reject_low 66 ALIGNMENT 99 Y12-9i08.p1k chr04 139 383 1530064 1530308 F 245 82.45 1442 reject_low 190 ALIGNMENT 66 Y12-9i08.p1k chr08 30 203 560668 560841 F 174 80.46 1442 reject_low 229 ALIGNMENT 0 Y12-9i08.p1k chr09 842 168 1687 1686 C 675 0.00 1442 reject_low 238 ALIGNMENT 70 Y12-9i08.p1k chr02 384 205 1845 2024 C 180 81.67 1442 reject_low 235 ALIGNMENT 0 Y12-9i08.q1k chr08 62 199 3564 3563 F 138 0.00 1329 reject_low 343 ALIGNMENT 0 Y12-9i08.p1k chr09 842 373 2166 2165 C 470 0.00 1442 reject_low 298 ALIGNMENT 0 Y12-9i08.p1k chr07 240 842 1089394 1089393 F 603 0.00 1442 reject_low 158 ALIGNMENT 0 Y12-9i08.p1k chr16 842 384 1556 1555 C 459 0.00 1442 reject_low 98 ALIGNMENT 56 Y12-9i08.p1k chr07 30 167 1089257 1089394 F 138 81.16 1442 reject_low 251 ALIGNMENT 0 Y12-9i08.p1k chr04 373 842 1530153 1530152 F 470 0.00 1442 reject_low 284 ALIGNMENT 205 Y12-9i08.p1k chr02 383 26 1558 1915 C 358 87.43 1442 reject_low 59 ALIGNMENT 43 Y12-9i08.p1k chr12 372 305 2126 2193 C 68 89.71 1442|0,4 reject_low 318 ALIGNMENT 0 Y12-9i08.p1k chr15 384 842 1089365 1089364 F 459 0.00 1442 reject_low 278 ALIGNMENT 0 Y12-9i08.p1k chr14 842 384 1647 1646 C 459 0.00 1442 reject_low 97 ALIGNMENT 29 Y12-9i08.p1k chr06 60 22 892 930 C 39 92.31 1442 reject_low 283 ALIGNMENT 0 Y12-9i08.p1k chr08 842 384 1760 1759 C 459 0.00 1442 reject_low 274 ALIGNMENT 0 Y12-9i08.p1k chr12 309 308 1070024 1076290 F 0 0.00 1442 reject_low 319 ALIGNMENT 151 Y12-9i08.p1k chr12 22 275 1069773 1070026 F 254 87.80 1442|0,3 reject_low 321 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1069738 1069737 F 459 0.00 1442 reject_low 277 ALIGNMENT 142 Y12-9i08.p1k chr09 372 98 1949 2223 C 275 85.82 1442 reject_low 131 ALIGNMENT 182 Y12-9i08.p1k chr12 372 31 1874 2215 C 342 85.96 1442 reject_low 71 ALIGNMENT 0 Y12-9i08.p1k chr12 842 381 7474 7473 C 462 0.00 1442 reject_low 335 ALIGNMENT 0 Y12-9i08.p1k chr13 210 62 2092 2091 C 149 0.00 1442 reject_low 244 ALIGNMENT 0 Y12-9i08.p1k chr08 127 62 1907 1906 C 66 0.00 1442 reject_low 26 ALIGNMENT 33 Y12-9i08.p1k chr16 384 319 1842 1907 C 66 84.85 1442 reject_low 309 ALIGNMENT 0 Y12-9i08.p1k chr07 204 842 1089394 1089393 F 639 0.00 1442 reject_low 228 ALIGNMENT 52 Y12-9i08.q1k chr16 255 200 944290 944345 C 56 98.21 1329 reject_low 346 ALIGNMENT 38 Y12-9i08.p1k chr02 384 313 1953 2024 C 72 86.11 1442 reject_low 294 ALIGNMENT 151 Y12-9i08.p1k chr13 275 22 1667 1920 C 254 87.80 1442 reject_low 112 ALIGNMENT 43 Y12-9i08.p1k chr08 372 269 1806 1909 C 104 82.69 1442 reject_low 293 ALIGNMENT 0 Y12-9i08.p1k chr16 373 842 946159 946158 F 470 0.00 1442 reject_low 218 ALIGNMENT 0 Y12-9i08.p1k chr07 348 842 1089394 1089393 F 495 0.00 1442 reject_low 73 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 1792 1791 C 459 0.00 1442 reject_low 64 ALIGNMENT 99 Y12-9i08.p1k chr15 139 383 1089229 1089473 F 245 82.45 1442 reject_low 193 ALIGNMENT 0 Y12-9i08.p1k chr12 842 348 7327 7326 C 495 0.00 1442 reject_low 331 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1076617 1076616 F 459 0.00 1442 reject_low 103 ALIGNMENT 0 Y12-9i08.p1k chr09 842 276 1687 1686 C 567 0.00 1442 reject_low 105 ALIGNMENT 101 Y12-9i08.p1k chr16 128 380 945987 946239 F 253 82.21 1442 reject_low 188 ALIGNMENT 241 Y12-9i08.p1k chr07 26 383 1089001 1089358 F 358 90.78 1442 reject_low 36 ALIGNMENT 0 Y12-9i08.p1k chr07 381 842 1089247 1089246 F 462 0.00 1442 reject_low 183 ALIGNMENT 196 Y12-9i08.p1k chr09 388 62 1897 2223 C 327 88.38 1442 reject_low 57 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 7615 7614 C 459 0.00 1442 reject_low 338 ALIGNMENT 174 Y12-9i08.p1k chr07 26 311 1089109 1089394 F 286 88.46 1442 reject_low 86 ALIGNMENT 0 Y12-9i08.q1k chr08 199 62 558799 558798 C 138 0.00 1329 reject_low 344 ALIGNMENT 176 Y12-9i08.p1k chr05 22 347 574992 575317 F 326 86.20 1442 reject_low 72 ALIGNMENT 0 Y12-9i08.p1k chr12 842 385 7686 7685 C 458 0.00 1442 reject_low 340 ALIGNMENT 0 Y12-9i08.p1k chr04 62 268 1530086 1530085 F 207 0.00 1442 reject_low 276 ALIGNMENT 0 Y12-9i08.p1k chr13 842 240 1668 1667 C 603 0.00 1442 reject_low 161 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1076509 1076508 F 459 0.00 1442 reject_low 192 ALIGNMENT 0 Y12-9i08.p1k chr15 348 842 1089653 1089652 F 495 0.00 1442 reject_low 83 ALIGNMENT 0 Y12-9i08.p1k chr05 158 62 2055 2054 C 97 0.00 1442 reject_low 240 ALIGNMENT 0 Y12-9i08.p1k chr16 842 240 1484 1483 C 603 0.00 1442 reject_low 164 ALIGNMENT 0 Y12-9i08.p1k chr05 384 842 575245 575244 F 459 0.00 1442 reject_low 94 ALIGNMENT 0 Y12-9i08.p1k chr14 304 62 1977 1976 C 243 0.00 1442 reject_low 289 ALIGNMENT 29 Y12-9i08.q1k chr08 277 309 3610 3642 F 33 96.97 1329 reject_low 343 ALIGNMENT 0 Y12-9i08.p1k chr12 62 210 1069602 1069601 F 149 0.00 1442 reject_low 263 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 1958 1957 C 459 0.00 1442 reject_low 130 ALIGNMENT 64 Y12-9i08.p1k chr13 384 211 1918 2091 C 174 81.03 1442 reject_low 244 ALIGNMENT 87 Y12-9i08.p1k chr12 175 372 1069602 1069799 F 198 83.33 1442 reject_low 222 ALIGNMENT 0 Y12-9i08.p1k chr08 384 842 560553 560552 F 459 0.00 1442 reject_low 279 ALIGNMENT 96 Y12-9i08.p1k chr09 383 201 2046 2228 C 183 86.34 1442 reject_low 205 ALIGNMENT 56 Y12-9i08.p1k chr12 167 30 7326 7463 C 138 81.16 1442 reject_low 324 ALIGNMENT 29 Y12-9i08.q1k chr12 277 309 9413 9445 F 33 96.97 1329 reject_low 329 ALIGNMENT 96 Y12-9i08.p1k chr08 347 98 1651 1900 C 250 81.60 1442 reject_low 206 ALIGNMENT 241 Y12-9i08.p1k chr16 383 26 1519 1876 C 358 90.78 1442 reject_low 39 ALIGNMENT 195 Y12-9i08.p1k chr10 388 66 1880 2202 C 323 88.54 1442 reject_low 58 ALIGNMENT 0 Y12-9i08.p1k chr04 348 842 1530488 1530487 F 495 0.00 1442 reject_low 80 ALIGNMENT 0 Y12-9i08.p1k chr05 276 842 575317 575316 F 567 0.00 1442 reject_low 109 ALIGNMENT 0 Y12-9i08.p1k chr14 842 384 1611 1610 C 459 0.00 1442 reject_low 38 ALIGNMENT 33 Y12-9i08.p1k chr04 319 384 1530064 1530129 F 66 84.85 1442 reject_low 300 ALIGNMENT 151 Y12-9i08.p1k chr14 275 22 1574 1827 C 254 87.80 1442 reject_low 113 ALIGNMENT 0 Y12-9i08.p1k chr16 304 62 1886 1885 C 243 0.00 1442 reject_low 291 ALIGNMENT 121 Y12-9i08.p1k chr05 275 30 1470 1715 C 246 84.55 1442 reject_low 139 ALIGNMENT 53 Y12-9i08.q1k chr02 422 478 4154 4210 F 57 98.25 1329 reject_low 341 ALIGNMENT 0 Y12-9i08.p1k chr06 194 62 1262 1261 C 133 0.00 1442 reject_low 314 ALIGNMENT 53 Y12-9i08.q1k chr08 478 422 558621 558677 C 57 98.25 1329 reject_low 344 ALIGNMENT 0 Y12-9i08.q1k chr12 310 329 9446 9441 F 20 0.00 1329 reject_low 329 ALIGNMENT 31 Y12-9i08.p1k chr08 319 372 560417 560470 F 54 87.04 1442 reject_low 315 ALIGNMENT 168 Y12-9i08.p1k chr08 275 26 1651 1900 C 250 90.40 1442 reject_low 99 ALIGNMENT 56 Y12-9i08.p1k chr12 167 30 1683 1820 C 138 81.16 1442 reject_low 253 ALIGNMENT 265 Y12-9i08.p1k chr08 26 383 560448 560805 F 358 93.02 1442 reject_low 32 ALIGNMENT 0 Y12-9i08.p1k chr12 138 62 7751 7750 C 77 0.00 1442 reject_low 334 ALIGNMENT 173 Y12-9i08.p1k chr15 22 347 1089328 1089653 F 326 85.89 1442 reject_low 83 ALIGNMENT 189 Y12-9i08.p1k chr12 383 22 1791 2152 C 362 85.64 1442 reject_low 64 ALIGNMENT 132 Y12-9i08.p1k chr08 67 380 560417 560730 F 314 82.48 1442 reject_low 135 ALIGNMENT 0 Y12-9i08.p1k chr15 373 842 1089426 1089425 F 470 0.00 1442 reject_low 223 ALIGNMENT 883 Y12-9i08.p1k chr04 22 1156 1530127 1531273 F 1135 93.39 1442 reject_low 18 ALIGNMENT 0 Y12-9i08.p1k chr16 62 138 945962 945961 F 77 0.00 1442 reject_low 180 ALIGNMENT 34 Y12-9i08.p1k chr06 384 195 1072 1261 C 190 74.74 1442 reject_low 314 ALIGNMENT 105 Y12-9i08.p1k chr12 22 239 1069809 1070026 F 218 83.94 1442 reject_low 323 ALIGNMENT 61 Y12-9i08.p1k chr15 211 384 1089229 1089402 F 174 80.46 1442 reject_low 264 ALIGNMENT 0 Y12-9i08.p1k chr13 842 168 1668 1667 C 675 0.00 1442 reject_low 255 ALIGNMENT 0 Y12-9i08.q1k chr16 421 360 944225 944240 C 62 0.00 1329 reject_low 346 ALIGNMENT 883 Y12-9i08.p1k chr12 22 1156 1069665 1070811 F 1135 93.39 1442 accept_tel 0 ALIGNMENT 100 Y12-9i08.p1k chr10 372 173 2004 2203 C 200 85.50 1442 reject_low 194 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1687 1686 C 459 0.00 1442 reject_low 125 ALIGNMENT 0 Y12-9i08.p1k chr07 384 842 1089214 1089213 F 459 0.00 1442 reject_low 175 ALIGNMENT 0 Y12-9i08.p1k chr10 842 240 1670 1669 C 603 0.00 1442 reject_low 142 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 1706 1705 C 459 0.00 1442 reject_low 61 ALIGNMENT 0 Y12-9i08.p1k chr09 344 62 2229 2228 C 283 0.00 1442 reject_low 313 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 1828 1827 C 459 0.00 1442 reject_low 48 ALIGNMENT 804 Y12-9i08.p1k chr08 1156 128 866 1906 C 1029 93.49 1442 reject_low 26 ALIGNMENT 0 Y12-9i08.p1k chr06 158 62 1262 1261 C 97 0.00 1442 reject_low 280 ALIGNMENT 907 Y12-9i08.p1k chr12 1156 22 898 2044 C 1135 94.01 1442 reject_low 14 ALIGNMENT 1007 Y12-9i08.q1k chr10 34 1158 4284 5422 F 1125 97.24 1329 reject_low 2 ALIGNMENT 52 Y12-9i08.p1k chr04 269 383 1530086 1530200 F 115 84.35 1442 reject_low 276 ALIGNMENT 52 Y12-9i08.q1k chr08 200 255 3564 3619 F 56 98.21 1329 reject_low 343 ALIGNMENT 80 Y12-9i08.p1k chr06 167 22 893 1038 C 146 85.62 1442 reject_low 195 ALIGNMENT 0 Y12-9i08.p1k chr13 127 62 2067 2066 C 66 0.00 1442 reject_low 185 ALIGNMENT 0 Y12-9i08.p1k chr02 842 385 1846 1845 C 458 0.00 1442 reject_low 235 ALIGNMENT 0 Y12-9i08.q1k chr08 479 866 3741 3740 F 388 0.00 1329 reject_low 343 ALIGNMENT 0 Y12-9i08.p1k chr02 276 62 2025 2024 C 215 0.00 1442 reject_low 282 ALIGNMENT 0 Y12-9i08.p1k chr05 384 842 575029 575028 F 459 0.00 1442 reject_low 268 ALIGNMENT 120 Y12-9i08.p1k chr13 380 67 1778 2091 C 314 81.21 1442 reject_low 147 ALIGNMENT 29 Y12-9i08.q1k chr08 309 277 558720 558752 C 33 96.97 1329 reject_low 344 ALIGNMENT 97 Y12-9i08.p1k chr08 383 138 1687 1932 C 246 82.11 1442 reject_low 204 ALIGNMENT 0 Y12-9i08.p1k chr16 127 62 1883 1882 C 66 0.00 1442 reject_low 187 ALIGNMENT 63 Y12-9i08.p1k chr06 311 98 893 1106 C 214 78.50 1442 reject_low 328 ALIGNMENT 117 Y12-9i08.p1k chr04 67 380 1530064 1530377 F 314 80.89 1442 reject_low 151 ALIGNMENT 151 Y12-9i08.p1k chr12 22 275 1076436 1076689 F 254 87.80 1442 reject_low 111 ALIGNMENT 66 Y12-9i08.p1k chr12 30 203 1076516 1076689 F 174 80.46 1442 reject_low 230 ALIGNMENT 105 Y12-9i08.p1k chr07 22 239 1089177 1089394 F 218 83.94 1442 reject_low 158 ALIGNMENT 0 Y12-9i08.p1k chr15 62 127 1089254 1089253 F 66 0.00 1442 reject_low 199 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 1867 1866 C 459 0.00 1442 reject_low 51 ALIGNMENT 0 Y12-9i08.p1k chr12 842 204 1684 1683 C 639 0.00 1442 reject_low 170 ALIGNMENT 87 Y12-9i08.p1k chr10 203 30 1669 1842 C 174 84.48 1442 reject_low 202 ALIGNMENT 111 Y12-9i08.p1k chr05 239 30 1470 1679 C 210 85.71 1442 reject_low 150 ALIGNMENT 0 Y12-9i08.p1k chr05 842 240 1471 1470 C 603 0.00 1442 reject_low 150 ALIGNMENT 0 Y12-9i08.q1k chr12 360 421 3937 9487 F 62 0.00 1329 reject_low 345 ALIGNMENT 170 Y12-9i08.p1k chr12 31 383 1069602 1069954 F 353 84.42 1442 reject_low 102 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 7363 7362 C 459 0.00 1442 reject_low 330 ALIGNMENT 0 Y12-9i08.p1k chr12 210 204 2216 7325 C 7 0.00 1442 reject_low 326 ALIGNMENT 0 Y12-9i08.p1k chr15 62 268 1089251 1089250 F 207 0.00 1442 reject_low 278 ALIGNMENT 0 Y12-9i08.p1k chr04 62 318 1530064 1530063 F 257 0.00 1442 reject_low 300 ALIGNMENT 0 Y12-9i08.q1k chr05 646 701 4590 4585 F 56 0.00 1329 reject_low 10 ALIGNMENT 151 Y12-9i08.p1k chr12 275 22 7326 7579 C 254 87.80 1442|3,0 reject_low 320 ALIGNMENT 101 Y12-9i08.p1k chr12 380 128 7473 7725 C 253 82.21 1442 reject_low 335 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 1975 1974 C 459 0.00 1442 reject_low 128 ALIGNMENT 0 Y12-9i08.p1k chr05 842 348 1471 1470 C 495 0.00 1442 reject_low 92 ALIGNMENT 121 Y12-9i08.p1k chr05 383 47 1722 2058 C 337 80.42 1442 reject_low 143 ALIGNMENT 143 Y12-9i08.p1k chr02 347 22 1486 1811 C 326 82.82 1442 reject_low 124 ALIGNMENT 0 Y12-9i08.p1k chr12 138 62 2216 2215 C 77 0.00 1442 reject_low 176 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 1814 1813 C 459 0.00 1442 reject_low 56 ALIGNMENT 84 Y12-9i08.p1k chr06 119 26 905 998 C 94 96.81 1442 reject_low 173 ALIGNMENT 0 Y12-9i08.p1k chr15 384 842 1089473 1089472 F 459 0.00 1442 reject_low 193 ALIGNMENT 0 Y12-9i08.p1k chr02 842 276 1487 1486 C 567 0.00 1442 reject_low 134 ALIGNMENT 0 Y12-9i08.p1k chr16 348 842 946494 946493 F 495 0.00 1442 reject_low 93 ALIGNMENT 0 Y12-9i08.p1k chr13 842 384 1956 1955 C 459 0.00 1442 reject_low 270 ALIGNMENT 0 Y12-9i08.p1k chr16 138 62 1908 1907 C 77 0.00 1442 reject_low 179 ALIGNMENT 0 Y12-9i08.p1k chr05 381 842 575206 575205 F 462 0.00 1442 reject_low 145 ALIGNMENT 66 Y12-9i08.p1k chr12 203 30 7326 7499 C 174 80.46 1442 reject_low 326 ALIGNMENT 120 Y12-9i08.p1k chr12 380 67 7437 7750 C 314 81.21 1442 reject_low 333 ALIGNMENT 0 Y12-9i08.p1k chr14 842 381 1686 1685 C 462 0.00 1442 reject_low 148 ALIGNMENT 0 Y12-9i08.q1k chr02 360 421 4138 4153 F 62 0.00 1329 reject_low 341 ALIGNMENT 149 Y12-9i08.p1k chr12 311 30 1683 1964 C 282 85.82 1442 reject_low 123 ALIGNMENT 241 Y12-9i08.p1k chr13 383 26 1703 2060 C 358 90.78 1442 reject_low 37 ALIGNMENT 90 Y12-9i08.p1k chr16 372 175 1710 1907 C 198 83.84 1442 reject_low 217 ALIGNMENT 880 Y12-9i08.p1k chr12 1156 22 6541 7687 C 1135 93.22 1442 reject_low 28 ALIGNMENT 174 Y12-9i08.p1k chr05 26 311 575032 575317 F 286 88.46 1442 reject_low 85 ALIGNMENT 103 Y12-9i08.p1k chr06 372 47 940 1265 C 326 78.83 1442 reject_low 172 ALIGNMENT 775 Y12-9i08.p1k chr06 1156 22 108 1254 C 1135 90.13 1442 reject_low 27 ALIGNMENT 359 Y12-9i08.q1k chr12 1158 702 1066629 1067097 C 457 94.09 1329 reject_low 9 ALIGNMENT 146 Y12-9i08.p1k chr16 26 239 946281 946494 F 214 90.65 1442 reject_low 120 ALIGNMENT 0 Y12-9i08.p1k chr06 842 168 894 893 C 675 0.00 1442 reject_low 195 ALIGNMENT 263 Y12-9i08.p1k chr09 347 22 1686 2011 C 326 95.09 1442 reject_low 30 ALIGNMENT 0 Y12-9i08.q1k chr16 329 310 944271 944266 C 20 0.00 1329 reject_low 346 ALIGNMENT 0 Y12-9i08.p1k chr02 842 373 1822 1821 C 470 0.00 1442 reject_low 220 ALIGNMENT 880 Y12-9i08.p1k chr13 1156 22 882 2028 C 1135 93.22 1442 reject_low 24 ALIGNMENT 0 Y12-9i08.p1k chr12 842 381 7438 7437 C 462 0.00 1442 reject_low 333 ALIGNMENT 0 Y12-9i08.p1k chr06 842 348 894 893 C 495 0.00 1442 reject_low 208 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1759 1758 C 459 0.00 1442 reject_low 189 ALIGNMENT 105 Y12-9i08.p1k chr15 22 239 1089436 1089653 F 218 83.94 1442 reject_low 163 ALIGNMENT 90 Y12-9i08.p1k chr12 372 175 2018 2215 C 198 83.84 1442 reject_low 324 ALIGNMENT 0 Y12-9i08.p1k chr14 174 62 1999 1998 C 113 0.00 1442 reject_low 216 ALIGNMENT 24 Y12-9i08.q1k chr13 330 359 3783 3812 F 30 93.33 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr06 842 240 894 893 C 603 0.00 1442 reject_low 137 ALIGNMENT 29 Y12-9i08.q1k chr02 277 309 4079 4111 F 33 96.97 1329 reject_low 341 ALIGNMENT 0 Y12-9i08.p1k chr16 842 348 1484 1483 C 495 0.00 1442 reject_low 76 ALIGNMENT 0 Y12-9i08.p1k chr16 842 385 1843 1842 C 458 0.00 1442 reject_low 309 ALIGNMENT 957 Y12-9i08.q1k chr07 1158 34 1085918 1087055 C 1125 95.73 1329 reject_low 6 ALIGNMENT 61 Y12-9i08.p1k chr12 211 384 1076265 1076438 F 174 80.46 1442 reject_low 327 ALIGNMENT 241 Y12-9i08.p1k chr14 383 26 1610 1967 C 358 90.78 1442 reject_low 38 ALIGNMENT 98 Y12-9i08.p1k chr12 128 380 1076290 1076542 F 253 81.82 1442 reject_low 198 ALIGNMENT 0 Y12-9i08.p1k chr05 842 204 1471 1470 C 639 0.00 1442 reject_low 200 ALIGNMENT 0 Y12-9i08.p1k chr08 173 62 1933 1932 C 112 0.00 1442 reject_low 224 ALIGNMENT 0 Y12-9i08.p1k chr08 62 318 560417 560416 F 257 0.00 1442 reject_low 315 ALIGNMENT 0 Y12-9i08.q1k chr05 596 610 4559 4554 F 15 0.00 1329 reject_low 10 ALIGNMENT 0 Y12-9i08.p1k chr12 842 385 2151 2150 C 458 0.00 1442 reject_low 303 ALIGNMENT 0 Y12-9i08.p1k chr13 318 62 2092 2091 C 257 0.00 1442 reject_low 306 ALIGNMENT 144 Y12-9i08.p1k chr10 383 136 1957 2204 C 248 88.31 1442 reject_low 130 ALIGNMENT 0 Y12-9i08.p1k chr16 204 842 946494 946493 F 639 0.00 1442 reject_low 171 ALIGNMENT 0 Y12-9i08.p1k chr07 168 842 1089394 1089393 F 675 0.00 1442 reject_low 251 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1069846 1069845 F 459 0.00 1442 reject_low 191 ALIGNMENT 55 Y12-9i08.p1k chr16 269 383 945984 946098 F 115 85.22 1442 reject_low 273 ALIGNMENT 53 Y12-9i08.q1k chr13 422 478 3829 3885 F 57 98.25 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr08 384 842 560589 560588 F 459 0.00 1442 reject_low 261 ALIGNMENT 0 Y12-9i08.p1k chr13 842 381 1779 1778 C 462 0.00 1442 reject_low 147 ALIGNMENT 102 Y12-9i08.p1k chr05 139 383 574893 575137 F 245 82.86 1442 reject_low 174 ALIGNMENT 0 Y12-9i08.q1k chr16 199 62 944346 944345 C 138 0.00 1329 reject_low 346 ALIGNMENT 151 Y12-9i08.p1k chr07 22 275 1089141 1089394 F 254 87.80 1442 reject_low 110 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946458 946457 F 459 0.00 1442 reject_low 45 ALIGNMENT 0 Y12-9i08.p1k chr12 381 842 1069915 1069914 F 462 0.00 1442 reject_low 152 ALIGNMENT 0 Y12-9i08.q1k chr06 360 421 2974 2989 F 62 0.00 1329 reject_low 342 ALIGNMENT 0 Y12-9i08.p1k chr02 842 381 1706 1705 C 462 0.00 1442 reject_low 165 ALIGNMENT 28 Y12-9i08.p1k chr06 88 30 1128 1186 C 59 83.05 1442 reject_low 328 ALIGNMENT 238 Y12-9i08.p1k chr12 26 383 1076296 1076653 F 358 90.50 1442 reject_low 42 ALIGNMENT 0 Y12-9i08.p1k chr12 308 309 2190 7328 C 0 0.00 1442 reject_low 318 ALIGNMENT 0 Y12-9i08.p1k chr12 373 842 1069691 1069690 F 470 0.00 1442 reject_low 287 ALIGNMENT 114 Y12-9i08.p1k chr08 139 383 560417 560661 F 245 84.49 1442 reject_low 166 ALIGNMENT 29 Y12-9i08.q1k chr16 309 277 944267 944299 C 33 96.97 1329 reject_low 346 ALIGNMENT 0 Y12-9i08.p1k chr07 384 842 1089358 1089357 F 459 0.00 1442 reject_low 36 ALIGNMENT 0 Y12-9i08.p1k chr12 127 62 7726 7725 C 66 0.00 1442 reject_low 335 ALIGNMENT 0 Y12-9i08.p1k chr08 842 384 1724 1723 C 459 0.00 1442 reject_low 224 ALIGNMENT 0 Y12-9i08.q1k chr12 256 276 9423 9412 F 21 0.00 1329 reject_low 329 ALIGNMENT 0 Y12-9i08.p1k chr12 174 62 7751 7750 C 113 0.00 1442 reject_low 336 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946350 946349 F 459 0.00 1442 reject_low 44 ALIGNMENT 0 Y12-9i08.p1k chr15 62 318 1089229 1089228 F 257 0.00 1442 reject_low 308 ALIGNMENT 0 Y12-9i08.p1k chr12 381 842 1069879 1069878 F 462 0.00 1442 reject_low 197 ALIGNMENT 0 Y12-9i08.p1k chr05 348 842 575317 575316 F 495 0.00 1442 reject_low 72 ALIGNMENT 0 Y12-9i08.p1k chr15 62 138 1089229 1089228 F 77 0.00 1442 reject_low 193 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1651 1650 C 459 0.00 1442 reject_low 129 ALIGNMENT 47 Y12-9i08.p1k chr06 372 159 1048 1261 C 214 76.17 1442 reject_low 280 ALIGNMENT 92 Y12-9i08.p1k chr12 203 22 1683 1864 C 182 84.62 1442 reject_low 170 ALIGNMENT 541 Y12-9i08.q1k chr12 595 34 1067125 1067687 C 562 99.11 1329 reject_low 9 ALIGNMENT 0 Y12-9i08.p1k chr05 842 373 1806 1805 C 470 0.00 1442 reject_low 236 ALIGNMENT 0 Y12-9i08.p1k chr04 168 842 1530488 1530487 F 675 0.00 1442 reject_low 249 ALIGNMENT 174 Y12-9i08.p1k chr14 311 26 1574 1859 C 286 88.46 1442 reject_low 89 ALIGNMENT 33 Y12-9i08.p1k chr16 319 384 945962 946027 F 66 84.85 1442 reject_low 310 ALIGNMENT 0 Y12-9i08.p1k chr05 842 384 1615 1614 C 459 0.00 1442 reject_low 65 ALIGNMENT 0 Y12-9i08.q1k chr02 62 199 4033 4032 F 138 0.00 1329 reject_low 341 ALIGNMENT 65 Y12-9i08.p1k chr06 96 22 892 966 C 75 96.00 1442 reject_low 212 ALIGNMENT 0 Y12-9i08.p1k chr16 842 385 1735 1734 C 458 0.00 1442 reject_low 246 ALIGNMENT 147 Y12-9i08.p1k chr09 383 129 1974 2228 C 255 88.24 1442 reject_low 128 ALIGNMENT 99 Y12-9i08.p1k chr12 139 383 1076265 1076509 F 245 82.45 1442 reject_low 192 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946386 946385 F 459 0.00 1442 reject_low 62 ALIGNMENT 0 Y12-9i08.p1k chr12 381 842 1076578 1076577 F 462 0.00 1442 reject_low 153 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 1720 1719 C 459 0.00 1442 reject_low 47 ALIGNMENT 223 Y12-9i08.p1k chr05 383 26 1578 1935 C 358 89.11 1442 reject_low 46 ALIGNMENT 219 Y12-9i08.p1k chr10 383 30 1849 2202 C 354 88.98 1442 reject_low 52 ALIGNMENT 24 Y12-9i08.q1k chr06 330 359 2944 2973 F 30 93.33 1329 reject_low 342 ALIGNMENT 0 Y12-9i08.p1k chr08 384 842 560769 560768 F 459 0.00 1442 reject_low 63 ALIGNMENT 56 Y12-9i08.p1k chr05 30 167 575180 575317 F 138 81.16 1442 reject_low 250 ALIGNMENT 120 Y12-9i08.p1k chr16 380 67 1594 1907 C 314 81.21 1442 reject_low 149 ALIGNMENT 0 Y12-9i08.p1k chr10 280 62 2204 2203 C 219 0.00 1442 reject_low 275 ALIGNMENT 883 Y12-9i08.p1k chr05 22 1156 574956 576102 F 1135 93.39 1442 reject_low 19 ALIGNMENT 154 Y12-9i08.p1k chr09 275 22 1686 1939 C 254 88.19 1442 reject_low 105 ALIGNMENT 913 Y12-9i08.p1k chr16 22 1156 946133 947279 F 1135 94.19 1442 reject_low 12 ALIGNMENT 56 Y12-9i08.p1k chr16 167 30 1483 1620 C 138 81.16 1442 reject_low 258 ALIGNMENT 66 Y12-9i08.p1k chr12 30 203 1069853 1070026 F 174 80.46 1442 reject_low 327 ALIGNMENT 0 Y12-9i08.p1k chr05 62 174 574893 574892 F 113 0.00 1442 reject_low 213 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 1831 1830 C 459 0.00 1442 reject_low 55 ALIGNMENT 213 Y12-9i08.p1k chr16 22 383 946061 946422 F 362 87.85 1442 reject_low 53 ALIGNMENT 910 Y12-9i08.p1k chr02 1156 22 701 1847 C 1135 94.10 1442 reject_low 13 ALIGNMENT 0 Y12-9i08.p1k chr13 842 384 1740 1739 C 459 0.00 1442 reject_low 96 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 1756 1755 C 459 0.00 1442 reject_low 54 ALIGNMENT 90 Y12-9i08.p1k chr12 372 175 7553 7750 C 198 83.84 1442 reject_low 336 ALIGNMENT 0 Y12-9i08.p1k chr10 842 385 2173 2172 C 458 0.00 1442 reject_low 317 ALIGNMENT 0 Y12-9i08.p1k chr14 268 62 1977 1976 C 207 0.00 1442 reject_low 271 ALIGNMENT 105 Y12-9i08.p1k chr12 239 22 7326 7543 C 218 83.94 1442 reject_low 322 ALIGNMENT 921 Y12-9i08.p1k chr05 1156 26 685 1827 C 1131 94.52 1442 reject_low 11 ALIGNMENT 0 Y12-9i08.q1k chr13 62 199 3708 3707 F 138 0.00 1329 reject_low 347 ALIGNMENT 170 Y12-9i08.p1k chr12 31 383 1076265 1076617 F 353 84.42 1442 reject_low 103 ALIGNMENT 197 Y12-9i08.p1k chr08 31 383 560417 560769 F 353 86.97 1442 reject_low 63 ALIGNMENT 894 Y12-9i08.p1k chr10 1156 30 884 2022 C 1127 93.88 1442 reject_low 17 ALIGNMENT 0 Y12-9i08.p1k chr08 842 312 1652 1651 C 531 0.00 1442 reject_low 136 ALIGNMENT 0 Y12-9i08.p1k chr07 62 304 1088992 1088991 F 243 0.00 1442 reject_low 286 ALIGNMENT 90 Y12-9i08.p1k chr16 175 372 945962 946159 F 198 83.84 1442 reject_low 218 ALIGNMENT 105 Y12-9i08.p1k chr16 239 22 1483 1700 C 218 83.94 1442 reject_low 164 ALIGNMENT 24 Y12-9i08.q1k chr16 359 330 944241 944270 C 30 93.33 1329 reject_low 346 ALIGNMENT 0 Y12-9i08.q1k chr16 866 479 944169 944168 C 388 0.00 1329 reject_low 346 ALIGNMENT 64 Y12-9i08.p1k chr12 384 211 7577 7750 C 174 81.03 1442 reject_low 337 ALIGNMENT 0 Y12-9i08.p1k chr16 842 204 1484 1483 C 639 0.00 1442 reject_low 234 ALIGNMENT 0 Y12-9i08.p1k chr14 842 384 1863 1862 C 459 0.00 1442 reject_low 271 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 1723 1722 C 459 0.00 1442 reject_low 60 ALIGNMENT 0 Y12-9i08.p1k chr16 62 268 945984 945983 F 207 0.00 1442 reject_low 273 ALIGNMENT 0 Y12-9i08.p1k chr13 842 373 1895 1894 C 470 0.00 1442 reject_low 215 ALIGNMENT 105 Y12-9i08.p1k chr13 239 22 1667 1884 C 218 83.94 1442 reject_low 161 ALIGNMENT 155 Y12-9i08.p1k chr02 372 30 1677 2019 C 343 83.38 1442 reject_low 118 ALIGNMENT 0 Y12-9i08.p1k chr12 210 62 7751 7750 C 149 0.00 1442 reject_low 337 ALIGNMENT 0 Y12-9i08.q1k chr02 479 866 4210 4209 F 388 0.00 1329 reject_low 341 ALIGNMENT 43 Y12-9i08.p1k chr12 372 305 7661 7728 C 68 89.71 1442 reject_low 339 ALIGNMENT 0 Y12-9i08.q1k chr08 360 421 3669 3684 F 62 0.00 1329 reject_low 343 ALIGNMENT 0 Y12-9i08.p1k chr12 268 62 7729 7728 C 207 0.00 1442 reject_low 338 ALIGNMENT 0 Y12-9i08.p1k chr12 62 174 1069602 1069601 F 113 0.00 1442 reject_low 222 ALIGNMENT 0 Y12-9i08.p1k chr08 842 276 1652 1651 C 567 0.00 1442 reject_low 99 ALIGNMENT 0 Y12-9i08.p1k chr04 385 842 1530129 1530128 F 458 0.00 1442 reject_low 300 ALIGNMENT 120 Y12-9i08.p1k chr14 380 67 1685 1998 C 314 81.21 1442 reject_low 148 ALIGNMENT 53 Y12-9i08.q1k chr06 422 478 2990 3046 F 57 98.25 1329 reject_low 342 ALIGNMENT 0 Y12-9i08.p1k chr06 842 97 893 892 C 746 0.00 1442 reject_low 212 ALIGNMENT 0 Y12-9i08.p1k chr07 384 842 1089106 1089105 F 459 0.00 1442 reject_low 269 ALIGNMENT 173 Y12-9i08.p1k chr12 22 347 1076364 1076689 F 326 85.89 1442 reject_low 82 ALIGNMENT 0 Y12-9i08.p1k chr12 318 62 2216 2215 C 257 0.00 1442 reject_low 303 ALIGNMENT 0 Y12-9i08.p1k chr04 240 842 1530488 1530487 F 603 0.00 1442 reject_low 156 ALIGNMENT 0 Y12-9i08.p1k chr06 842 120 906 905 C 723 0.00 1442 reject_low 173 ALIGNMENT 92 Y12-9i08.p1k chr16 22 203 946313 946494 F 182 84.62 1442 reject_low 171 ALIGNMENT 205 Y12-9i08.p1k chr09 383 26 1722 2079 C 358 87.43 1442 reject_low 60 ALIGNMENT 0 Y12-9i08.p1k chr05 384 842 575281 575280 F 459 0.00 1442 reject_low 35 ALIGNMENT 0 Y12-9i08.p1k chr02 312 62 2025 2024 C 251 0.00 1442 reject_low 294 ALIGNMENT 0 Y12-9i08.p1k chr13 842 384 1704 1703 C 459 0.00 1442 reject_low 37 ALIGNMENT 0 Y12-9i08.p1k chr08 384 842 560805 560804 F 459 0.00 1442 reject_low 32 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1069954 1069953 F 459 0.00 1442 reject_low 102 ALIGNMENT 249 Y12-9i08.p1k chr05 383 22 1506 1867 C 362 91.16 1442 reject_low 33 ALIGNMENT 0 Y12-9i08.p1k chr07 62 210 1088970 1088969 F 149 0.00 1442 reject_low 243 ALIGNMENT 207 Y12-9i08.p1k chr09 383 22 1830 2191 C 362 87.29 1442 reject_low 55 ALIGNMENT 178 Y12-9i08.p1k chr02 383 26 1630 1987 C 358 84.92 1442 reject_low 77 ALIGNMENT 183 Y12-9i08.p1k chr09 383 22 1794 2155 C 362 85.08 1442 reject_low 68 ALIGNMENT 0 Y12-9i08.p1k chr07 384 842 1089322 1089321 F 459 0.00 1442 reject_low 95 ALIGNMENT 0 Y12-9i08.p1k chr05 230 62 2055 2054 C 169 0.00 1442 reject_low 316 ALIGNMENT 0 Y12-9i08.q1k chr12 701 646 1067098 1067093 C 56 0.00 1329 reject_low 9 ALIGNMENT 0 Y12-9i08.p1k chr12 384 842 1069990 1069989 F 459 0.00 1442 reject_low 41 ALIGNMENT 0 Y12-9i08.p1k chr12 373 842 1076354 1076353 F 470 0.00 1442 reject_low 319 ALIGNMENT 174 Y12-9i08.p1k chr12 26 311 1069741 1070026 F 286 88.46 1442|0,3 reject_low 319 ALIGNMENT 37 Y12-9i08.p1k chr08 305 372 560439 560506 F 68 86.76 1442 reject_low 299 ALIGNMENT 0 Y12-9i08.p1k chr15 204 842 1089653 1089652 F 639 0.00 1442 reject_low 233 ALIGNMENT 0 Y12-9i08.p1k chr02 842 240 1487 1486 C 603 0.00 1442 reject_low 138 ALIGNMENT 33 Y12-9i08.p1k chr12 319 384 1069602 1069667 F 66 84.85 1442 reject_low 304 ALIGNMENT 70 Y12-9i08.p1k chr06 372 83 976 1265 C 290 76.55 1442 reject_low 237 ALIGNMENT 174 Y12-9i08.p1k chr13 311 26 1667 1952 C 286 88.46 1442 reject_low 88 ALIGNMENT 0 Y12-9i08.q1k chr13 256 276 3764 3753 F 21 0.00 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr09 272 62 2229 2228 C 211 0.00 1442 reject_low 267 ALIGNMENT 0 Y12-9i08.p1k chr06 842 384 1002 1001 C 459 0.00 1442 reject_low 260 ALIGNMENT 173 Y12-9i08.p1k chr12 383 31 7398 7750 C 353 84.70 1442 reject_low 332 ALIGNMENT 56 Y12-9i08.p1k chr08 383 205 1759 1937 C 179 79.33 1442 reject_low 274 ALIGNMENT 0 Y12-9i08.p1k chr02 168 62 2025 2024 C 107 0.00 1442 reject_low 220 ALIGNMENT 883 Y12-9i08.p1k chr07 22 1156 1089033 1090179 F 1135 93.39 1442 reject_low 20 ALIGNMENT 0 Y12-9i08.p1k chr13 842 381 1815 1814 C 462 0.00 1442 reject_low 185 ALIGNMENT 173 Y12-9i08.p1k chr07 31 383 1088970 1089322 F 353 84.70 1442 reject_low 95 ALIGNMENT 0 Y12-9i08.p1k chr06 97 89 1107 1127 C 9 0.00 1442 reject_low 328 ALIGNMENT 0 Y12-9i08.p1k chr13 842 373 2003 2002 C 470 0.00 1442 reject_low 288 ALIGNMENT 0 Y12-9i08.p1k chr12 168 174 1070027 1076264 F 7 0.00 1442 reject_low 325 ALIGNMENT 0 Y12-9i08.p1k chr06 842 276 894 893 C 567 0.00 1442 reject_low 209 ALIGNMENT 0 Y12-9i08.p1k chr08 97 62 1901 1900 C 36 0.00 1442 reject_low 206 ALIGNMENT 173 Y12-9i08.p1k chr04 22 347 1530163 1530488 F 326 85.89 1442 reject_low 80 ALIGNMENT 0 Y12-9i08.p1k chr08 168 842 560841 560840 F 675 0.00 1442 reject_low 252 ALIGNMENT 52 Y12-9i08.q1k chr08 255 200 558743 558798 C 56 98.21 1329 reject_low 344 ALIGNMENT 53 Y12-9i08.q1k chr12 422 478 3953 4009 F 57 98.25 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340 ALIGNMENT 64 Y12-9i08.p1k chr06 383 138 1001 1246 C 246 77.64 1442 reject_low 260 ALIGNMENT 0 Y12-9i08.p1k chr08 328 62 1922 1921 C 267 0.00 1442 reject_low 311 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 2119 2118 C 459 0.00 1442 reject_low 267 ALIGNMENT 0 Y12-9i08.p1k chr16 385 842 946135 946134 F 458 0.00 1442 reject_low 247 ALIGNMENT 0 Y12-9i08.p1k chr15 385 842 1089402 1089401 F 458 0.00 1442 reject_low 264 ALIGNMENT 56 Y12-9i08.p1k chr14 167 30 1574 1711 C 138 81.16 1442 reject_low 256 ALIGNMENT 0 Y12-9i08.p1k chr10 842 373 2005 2004 C 470 0.00 1442 reject_low 194 ALIGNMENT 0 Y12-9i08.p1k chr04 384 842 1530308 1530307 F 459 0.00 1442 reject_low 190 ALIGNMENT 0 Y12-9i08.p1k chr09 842 373 2022 2021 C 470 0.00 1442 reject_low 181 ALIGNMENT 0 Y12-9i08.p1k chr12 62 127 1076290 1076289 F 66 0.00 1442 reject_low 198 ALIGNMENT 0 Y12-9i08.q1k chr12 479 866 4009 4008 F 388 0.00 1329 reject_low 28,330,331,332,333,334,335,336,337,338,339,340 ALIGNMENT 128 Y12-9i08.p1k chr08 203 22 1651 1832 C 182 91.21 1442 reject_low 127 ALIGNMENT 0 Y12-9i08.p1k chr12 842 385 7578 7577 C 458 0.00 1442 reject_low 337 ALIGNMENT 0 Y12-9i08.p1k chr12 381 842 1076542 1076541 F 462 0.00 1442 reject_low 198 ALIGNMENT 170 Y12-9i08.p1k chr05 347 22 1470 1795 C 326 85.58 1442 reject_low 92 ALIGNMENT 0 Y12-9i08.p1k chr16 384 842 946422 946421 F 459 0.00 1442 reject_low 53 ALIGNMENT 56 Y12-9i08.p1k chr04 30 167 1530351 1530488 F 138 81.16 1442 reject_low 249 ALIGNMENT 173 Y12-9i08.p1k chr13 383 31 1739 2091 C 353 84.70 1442 reject_low 96 ALIGNMENT 0 Y12-9i08.p1k chr12 168 842 1076689 1076688 F 675 0.00 1442 reject_low 254 ALIGNMENT 23 Y12-9i08.p1k chr10 384 352 2172 2204 C 33 90.91 1442 reject_low 317 ALIGNMENT 178 Y12-9i08.p1k chr09 383 26 1758 2115 C 358 84.92 1442 reject_low 78 ALIGNMENT 0 Y12-9i08.p1k chr13 268 62 2070 2069 C 207 0.00 1442 reject_low 270 ALIGNMENT 0 Y12-9i08.p1k chr12 62 304 1069624 1069623 F 243 0.00 1442 reject_low 287 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 2047 2046 C 459 0.00 1442 reject_low 205 ALIGNMENT 0 Y12-9i08.p1k chr13 842 385 2027 2026 C 458 0.00 1442 reject_low 306 ALIGNMENT 154 Y12-9i08.p1k chr10 275 22 1669 1922 C 254 88.19 1442 reject_low 106 ALIGNMENT 0 Y12-9i08.p1k chr05 373 842 575090 575089 F 470 0.00 1442 reject_low 213 ALIGNMENT 64 Y12-9i08.p1k chr05 211 384 574893 575066 F 174 81.03 1442 reject_low 242 ALIGNMENT 55 Y12-9i08.p1k chr05 269 383 574915 575029 F 115 85.22 1442 reject_low 268 ALIGNMENT 56 Y12-9i08.p1k chr12 30 167 1076552 1076689 F 138 81.16 1442 reject_low 254 ALIGNMENT 29 Y12-9i08.q1k chr12 645 611 1067094 1067128 C 35 94.29 1329 reject_low 9 ALIGNMENT 0 Y12-9i08.p1k chr08 204 842 560841 560840 F 639 0.00 1442 reject_low 229 ALIGNMENT 173 Y12-9i08.p1k chr14 383 31 1646 1998 C 353 84.70 1442 reject_low 97 ALIGNMENT 0 Y12-9i08.q1k chr16 276 256 944300 944289 C 21 0.00 1329 reject_low 346 ALIGNMENT 98 Y12-9i08.p1k chr12 128 380 1069627 1069879 F 253 81.82 1442 reject_low 197 ALIGNMENT 0 Y12-9i08.p1k chr07 385 842 1089035 1089034 F 458 0.00 1442 reject_low 302 ALIGNMENT 0 Y12-9i08.p1k chr10 172 62 2204 2203 C 111 0.00 1442 reject_low 194 ALIGNMENT 0 Y12-9i08.p1k chr14 842 168 1575 1574 C 675 0.00 1442 reject_low 256 ALIGNMENT 0 Y12-9i08.p1k chr08 842 373 1843 1842 C 470 0.00 1442 reject_low 297 ALIGNMENT 0 Y12-9i08.p1k chr06 842 373 941 940 C 470 0.00 1442 reject_low 172 ALIGNMENT 0 Y12-9i08.p1k chr09 97 62 2224 2223 C 36 0.00 1442 reject_low 131 ALIGNMENT 0 Y12-9i08.p1k chr12 842 312 1684 1683 C 531 0.00 1442 reject_low 123 ALIGNMENT 0 Y12-9i08.q1k chr08 310 329 3643 3638 F 20 0.00 1329 reject_low 343 ALIGNMENT 0 Y12-9i08.p1k chr12 62 138 1076265 1076264 F 77 0.00 1442 reject_low 192 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 7507 7506 C 459 0.00 1442 reject_low 334 ALIGNMENT 273 Y12-9i08.p1k chr02 383 22 1522 1883 C 362 93.37 1442 reject_low 29 ALIGNMENT 56 Y12-9i08.p1k chr16 30 167 946357 946494 F 138 81.16 1442 reject_low 259 ALIGNMENT 102 Y12-9i08.p1k chr07 139 383 1088970 1089214 F 245 82.86 1442 reject_low 175 ALIGNMENT 0 Y12-9i08.p1k chr08 842 384 1688 1687 C 459 0.00 1442 reject_low 204 ALIGNMENT 0 Y12-9i08.p1k chr08 373 842 560614 560613 F 470 0.00 1442 reject_low 210 ALIGNMENT 24 Y12-9i08.q1k chr12 330 359 9442 9471 F 30 93.33 1329 reject_low 329 ALIGNMENT 1007 Y12-9i08.q1k chr09 34 1158 4301 5439 F 1125 97.24 1329 reject_low 1 ALIGNMENT 0 Y12-9i08.p1k chr14 842 381 1722 1721 C 462 0.00 1442 reject_low 186 ALIGNMENT 0 Y12-9i08.q1k chr08 276 256 558753 558742 C 21 0.00 1329 reject_low 344 ALIGNMENT 0 Y12-9i08.p1k chr07 312 842 1089394 1089393 F 531 0.00 1442 reject_low 86 ALIGNMENT 0 Y12-9i08.p1k chr13 138 62 2092 2091 C 77 0.00 1442 reject_low 177 ALIGNMENT 80 Y12-9i08.p1k chr06 203 22 893 1074 C 182 82.42 1442 reject_low 207 ALIGNMENT 975 Y12-9i08.q1k chr04 1158 34 1527012 1528149 C 1125 96.27 1329 reject_low 3 ALIGNMENT 120 Y12-9i08.p1k chr07 67 380 1088970 1089283 F 314 81.21 1442 reject_low 146 ALIGNMENT 0 Y12-9i08.p1k chr12 385 842 1076438 1076437 F 458 0.00 1442 reject_low 327 ALIGNMENT 877 Y12-9i08.p1k chr14 1156 22 789 1935 C 1135 93.13 1442 reject_low 25 ALIGNMENT 0 Y12-9i08.p1k chr10 842 348 1670 1669 C 495 0.00 1442 reject_low 31 ALIGNMENT 0 Y12-9i08.p1k chr12 842 381 1903 1902 C 462 0.00 1442 reject_low 144 ALIGNMENT 64 Y12-9i08.p1k chr16 211 384 945962 946135 F 174 81.03 1442 reject_low 247 ALIGNMENT 0 Y12-9i08.q1k chr13 310 329 3787 3782 F 20 0.00 1329 reject_low 347 ALIGNMENT 0 Y12-9i08.p1k chr05 842 385 1902 1901 C 458 0.00 1442 reject_low 316 ALIGNMENT 901 Y12-9i08.p1k chr08 22 1156 560480 561626 F 1135 93.83 1442 reject_low 15 ALIGNMENT 0 Y12-9i08.p1k chr02 842 373 1678 1677 C 470 0.00 1442 reject_low 118 ALIGNMENT 113 Y12-9i08.p1k chr02 311 30 1486 1767 C 282 81.56 1442 reject_low 155 ALIGNMENT 90 Y12-9i08.p1k chr05 175 372 574893 575090 F 198 83.84 1442 reject_low 213 ALIGNMENT 52 Y12-9i08.p1k chr12 269 383 1069624 1069738 F 115 84.35 1442 reject_low 277 ALIGNMENT 0 Y12-9i08.p1k chr05 62 138 574893 574892 F 77 0.00 1442 reject_low 174 ALIGNMENT 0 Y12-9i08.p1k chr10 842 276 1670 1669 C 567 0.00 1442 reject_low 106 ALIGNMENT 90 Y12-9i08.p1k chr13 372 175 1894 2091 C 198 83.84 1442 reject_low 215 ALIGNMENT 0 Y12-9i08.p1k chr15 168 842 1089653 1089652 F 675 0.00 1442 reject_low 257 ALIGNMENT 0 Y12-9i08.p1k chr12 240 268 1070027 1076286 F 29 0.00 1442 reject_low 323 ALIGNMENT 222 Y12-9i08.p1k chr09 311 26 1686 1971 C 286 94.06 1442 reject_low 49 ALIGNMENT 0 Y12-9i08.p1k chr08 204 62 1938 1937 C 143 0.00 1442 reject_low 274 ALIGNMENT 0 Y12-9i08.p1k chr16 842 384 1664 1663 C 459 0.00 1442 reject_low 179 ALIGNMENT 0 Y12-9i08.p1k chr08 62 304 560439 560438 F 243 0.00 1442 reject_low 299 ALIGNMENT 53 Y12-9i08.q1k chr12 422 478 9488 9544 F 57 98.25 1329 reject_low 345 ALIGNMENT 86 Y12-9i08.p1k chr06 347 22 893 1218 C 326 76.99 1442 reject_low 208 ALIGNMENT 0 Y12-9i08.p1k chr10 842 137 1665 1664 C 706 0.00 1442 reject_low 296 ALIGNMENT 0 Y12-9i08.p1k chr16 842 373 1711 1710 C 470 0.00 1442 reject_low 217 ALIGNMENT 0 Y12-9i08.p1k chr08 842 168 1652 1651 C 675 0.00 1442 reject_low 219 ALIGNMENT 0 Y12-9i08.p1k chr15 62 174 1089229 1089228 F 113 0.00 1442 reject_low 223 ALIGNMENT 241 Y12-9i08.p1k chr12 383 26 7362 7719 C 358 90.78 1442 reject_low 330 ALIGNMENT 223 Y12-9i08.p1k chr12 383 26 1719 2076 C 358 89.11 1442 reject_low 47 ALIGNMENT 0 Y12-9i08.p1k chr12 842 384 2080 2079 C 459 0.00 1442 reject_low 320,322 ALIGNMENT 93 Y12-9i08.p1k chr08 175 372 560417 560614 F 198 84.34 1442 reject_low 210 ALIGNMENT 151 Y12-9i08.p1k chr05 22 275 575064 575317 F 254 87.80 1442 reject_low 109 ALIGNMENT 0 Y12-9i08.p1k chr02 842 384 1919 1918 C 459 0.00 1442 reject_low 282 ALIGNMENT 33 Y12-9i08.p1k chr07 319 384 1088970 1089035 F 66 84.85 1442 reject_low 302 ALIGNMENT 43 Y12-9i08.p1k chr14 372 305 1909 1976 C 68 89.71 1442 reject_low 289 ALIGNMENT 53 Y12-9i08.q1k chr16 478 422 944168 944224 C 57 98.25 1329 reject_low 346 ALIGNMENT 0 Y12-9i08.p1k chr02 204 62 2025 2024 C 143 0.00 1442 reject_low 235 ALIGNMENT 0 Y12-9i08.p1k chr08 373 842 560506 560505 F 470 0.00 1442 reject_low 299 ALIGNMENT 0 Y12-9i08.p1k chr16 62 127 945987 945986 F 66 0.00 1442 reject_low 188 ALIGNMENT 0 Y12-9i08.p1k chr12 268 240 2194 7325 C 29 0.00 1442 reject_low 322 ALIGNMENT 0 Y12-9i08.q1k chr06 62 199 2869 2868 F 138 0.00 1329 reject_low 342 ALIGNMENT 0 Y12-9i08.p1k chr02 842 385 1954 1953 C 458 0.00 1442 reject_low 294 ALIGNMENT 0 Y12-9i08.p1k chr12 62 138 1069602 1069601 F 77 0.00 1442 reject_low 191 ALIGNMENT 58 Y12-9i08.p1k chr09 167 26 1686 1827 C 142 80.99 1442 reject_low 238 ALIGNMENT 52 Y12-9i08.q1k chr06 200 255 2869 2924 F 56 98.21 1329 reject_low 342 ALIGNMENT 0 Y12-9i08.p1k chr10 842 384 1850 1849 C 459 0.00 1442 reject_low 52 ALIGNMENT 0 Y12-9i08.p1k chr09 842 384 1795 1794 C 459 0.00 1442 reject_low 68 ALIGNMENT 66 Y12-9i08.p1k chr07 30 203 1089221 1089394 F 174 80.46 1442 reject_low 228 ALIGNMENT 176 Y12-9i08.p1k chr16 347 22 1483 1808 C 326 86.20 1442 reject_low 76 ALIGNMENT 43 Y12-9i08.p1k chr15 305 372 1089251 1089318 F 68 89.71 1442 reject_low 290 ALIGNMENT 932 Y12-9i09.p1k chr13 24 1065 377573 378620 F 1042 97.12 1445 reject_low 31 ALIGNMENT 0 Y12-9i09.p1k chr08 62 147 548719 548718 F 86 0.00 1445 reject_low 44 ALIGNMENT 1019 Y12-9i09.q1k chr08 1228 35 547361 548568 C 1194 96.15 1366 reject_low 16 ALIGNMENT 835 Y12-9i09.p1k chr08 148 1065 548719 549636 F 918 97.49 1445 reject_low 44 ALIGNMENT 0 Y12-9i09.p1k chr05 907 62 449453 449452 C 846 0.00 1445 reject_low 48 ALIGNMENT 1019 Y12-9i09.q1k chr13 1228 35 376453 377660 C 1194 96.15 1366 reject_low 18 ALIGNMENT 1028 Y12-9i09.q1k chr15 35 1228 118663 119870 F 1194 96.40 1366 reject_low 8 ALIGNMENT 1019 Y12-9i09.q1k chr13 35 1228 185125 186332 F 1194 96.15 1366 accept 0 ALIGNMENT 1025 Y12-9i09.q1k chr07 1228 35 565600 566807 C 1194 96.31 1366 reject_low 12 ALIGNMENT 835 Y12-9i09.p1k chr04 24 1065 650370 651413 F 1042 94.15 1445 reject_low 42 ALIGNMENT 881 Y12-9i09.p1k chr07 1065 24 535765 536812 C 1042 95.59 1445 reject_low 38 ALIGNMENT 779 Y12-9i09.q1k chr13 1228 32 360755 361965 C 1197 89.39 1366 reject_low 25 ALIGNMENT 835 Y12-9i09.p1k chr04 24 1065 883171 884214 F 1042 94.15 1445 reject_low 43 ALIGNMENT 905 Y12-9i09.p1k chr10 1065 24 472378 473425 C 1042 96.26 1445 reject_low 36 ALIGNMENT 957 Y12-9i09.p1k chr02 1065 24 259577 260618 C 1042 98.08 1445 reject_low 28 ALIGNMENT 1031 Y12-9i09.q1k chr12 1184 35 479782 480938 C 1150 97.39 1366 reject_low 10 ALIGNMENT 1016 Y12-9i09.q1k chr16 1228 35 808394 809601 C 1194 96.06 1366 reject_low 21 ALIGNMENT 1031 Y12-9i09.q1k chr16 35 1228 57412 58619 F 1194 96.48 1366 reject_low 3 ALIGNMENT 840 Y12-9i09.p1k chr05 24 1065 448269 449315 F 1042 94.24 1445 reject_low 39 ALIGNMENT 44 Y12-9i09.p1k chr15 877 819 594701 594759 C 59 93.22 1445 reject_low 49 ALIGNMENT 914 Y12-9i09.p1k chr15 1065 24 117703 118750 C 1042 96.55 1445 reject_low 35 ALIGNMENT 929 Y12-9i09.p1k chr05 24 1065 497368 498415 F 1042 97.02 1445 reject_low 33 ALIGNMENT 1028 Y12-9i09.q1k chr16 1228 35 854382 855589 C 1194 96.40 1366 reject_low 9 ALIGNMENT 935 Y12-9i09.p1k chr04 1065 24 1095763 1096810 C 1042 97.22 1445 reject_low 30 ALIGNMENT 1019 Y12-9i09.q1k chr12 1228 35 218838 220045 C 1194 96.15 1366 reject_low 17 ALIGNMENT 0 Y12-9i09.p1k chr08 264 873 548720 548719 F 610 0.00 1445 reject_low 47 ALIGNMENT 816 Y12-9i09.p1k chr01 24 1065 165116 166162 F 1042 93.57 1445 reject_low 45 ALIGNMENT 1028 Y12-9i09.q1k chr04 35 1228 1207651 1208858 F 1194 96.40 1366 reject_low 4 ALIGNMENT 1031 Y12-9i09.q1k chr13 35 1228 197292 198499 F 1194 96.48 1366 reject_low 2 ALIGNMENT 1025 Y12-9i09.q1k chr04 1228 35 649250 650457 C 1194 96.31 1366 reject_low 11 ALIGNMENT 51 Y12-9i09.p1k chr05 1014 908 449346 449452 C 107 85.98 1445 reject_low 48 ALIGNMENT 961 Y12-9i09.p1k chr15 1065 24 594822 595863 C 1042 97.98 1445 reject_low 27 ALIGNMENT 1028 Y12-9i09.q1k chr12 35 1228 594104 595311 F 1194 96.40 1366 reject_low 7 ALIGNMENT 955 Y12-9i09.p1k chr13 1065 24 184171 185212 C 1042 97.79 1445 reject_low 29 ALIGNMENT 840 Y12-9i09.p1k chr16 1065 24 56453 57499 C 1042 94.24 1445 reject_low 41 ALIGNMENT 932 Y12-9i09.p1k chr16 1065 24 844409 845456 C 1042 97.12 1445 reject_low 32 ALIGNMENT 187 Y12-9i09.p1k chr08 69 263 548526 548720 F 195 100.00 1445 reject_low 47 ALIGNMENT 1016 Y12-9i09.q1k chr10 35 1228 478922 480129 F 1194 96.06 1366 reject_low 20 ALIGNMENT 899 Y12-9i09.p1k chr16 24 1065 855502 856549 F 1042 96.07 1445 reject_low 37 ALIGNMENT 929 Y12-9i09.p1k chr12 24 1065 219958 221005 F 1042 97.02 1445 reject_low 34 ALIGNMENT 782 Y12-9i09.q1k chr02 32 1228 221994 223204 F 1197 89.47 1366 reject_low 24 ALIGNMENT 0 Y12-9i09.p1k chr15 818 62 594760 594759 C 757 0.00 1445 reject_low 49 ALIGNMENT 840 Y12-9i09.p1k chr12 24 1065 480851 481897 F 1042 94.24 1445 reject_low 40 ALIGNMENT 1025 Y12-9i09.q1k chr12 35 1228 651783 652990 F 1194 96.31 1366 reject_low 13 ALIGNMENT 1031 Y12-9i09.q1k chr05 1228 35 447149 448356 C 1194 96.48 1366 reject_low 1 ALIGNMENT 1028 Y12-9i09.q1k chr10 35 1228 473338 474545 F 1194 96.40 1366 reject_low 6 ALIGNMENT 1028 Y12-9i09.q1k chr07 35 1228 536725 537932 F 1194 96.40 1366 reject_low 5 ALIGNMENT 846 Y12-9i09.p1k chr13 1065 24 196333 197379 C 1042 94.43 1445 accept 0 ALIGNMENT 1019 Y12-9i09.q1k chr05 1228 35 496248 497455 C 1194 96.15 1366 reject_low 15 ALIGNMENT 1013 Y12-9i09.q1k chr02 38 1228 260534 261738 F 1191 96.05 1366 reject_low 23 ALIGNMENT 1019 Y12-9i09.q1k chr04 35 1228 1096723 1097930 F 1194 96.15 1366 reject_low 14 ALIGNMENT 964 Y12-9i09.p1k chr07 24 1065 822269 823310 F 1042 98.08 1445 reject_low 26 ALIGNMENT 1016 Y12-9i09.q1k chr04 1228 35 882051 883258 C 1194 96.06 1366 reject_low 19 ALIGNMENT 1016 Y12-9i09.q1k chr16 35 1228 845369 846576 F 1194 96.06 1366 reject_low 22 ALIGNMENT 0 Y12-9i09.p1k chr01 62 754 160259 160258 F 693 0.00 1445 reject_low 46 ALIGNMENT 182 Y12-9i09.p1k chr01 755 1134 160259 160644 F 380 84.74 1445 reject_low 46 ALIGNMENT 936 Y12-9i10.q1k chr15 1145 27 439006 440138 C 1119 95.00 1330 accept 0 ALIGNMENT 918 Y12-9i10.p1k chr15 19 1151 436085 437224 F 1133 95.59 1393 accept 0 ALIGNMENT 919 Y12-9i11.q1k chr16 1096 29 927515 928598 C 1068 96.16 1303 accept 0 ALIGNMENT 882 Y12-9i11.p1k chr16 22 1040 924073 925109 F 1019 97.15 1343 accept 0 ALIGNMENT 996 Y12-9i13.p1k chr07 26 1250 406797 408026 F 1225 95.35 1449 accept 0 ALIGNMENT 1006 Y12-9i13.q1k chr07 1149 32 410888 412012 C 1118 97.58 1337 accept 0 ALIGNMENT 911 Y12-9i14.p1k chr16 17 1104 246009 247119 F 1088 96.14 1387 accept 0 ALIGNMENT 996 Y12-9i14.q1k chr16 1183 33 248867 250040 C 1151 96.70 1350 accept 0 ALIGNMENT 0 Y12-9i15.q1k chr15 95 62 649015 649014 C 34 0.00 1274 reject_low 1 ALIGNMENT 1028 Y12-9i15.q1k chr12 33 1247 673063 674284 F 1215 96.54 1274 accept 0 ALIGNMENT 134 Y12-9i15.q1k chr15 305 96 648805 649014 C 210 88.10 1274 reject_low 1 ALIGNMENT 942 Y12-9i15.p1k chr12 1128 21 677819 678945 C 1108 96.30 1373 accept 0 ALIGNMENT 0 Y12-9i15.q1k chr15 883 306 648806 648805 C 578 0.00 1274 reject_low 1 ALIGNMENT 993 Y12-9i16.q1k chr13 35 1259 312337 313564 F 1225 94.78 1296 accept 0 ALIGNMENT 1012 Y12-9i16.p1k chr13 1248 24 314459 315703 C 1225 95.51 1455 accept 0 ALIGNMENT 1041 Y12-9i17.q1k chr14 1255 33 446599 447818 C 1223 95.67 1296 accept 0 ALIGNMENT 974 Y12-9i17.p1k chr14 17 1158 443893 445038 F 1142 96.41 1410 accept 0 ALIGNMENT 1029 Y12-9i18.p1k chr04 22 1172 1487608 1488770 F 1151 97.39 1380 accept_chi 0 ALIGNMENT 1017 Y12-9i18.q1k chr05 1223 38 453747 454945 C 1186 96.04 1288 accept_chi 1 ALIGNMENT 1028 Y12-9i19.q1k chr12 1198 35 456466 457644 C 1164 96.99 1250 accept 0 ALIGNMENT 1028 Y12-9i19.q1k chr12 1198 35 465603 466781 C 1164 96.99 1250 accept 1 ALIGNMENT 1000 Y12-9i19.p1k chr12 20 1105 453560 454657 F 1086 97.97 1349 accept 0 ALIGNMENT 1000 Y12-9i19.p1k chr12 20 1105 462697 463794 F 1086 97.97 1349 accept 1 ALIGNMENT 21 Y12-9i20.p1k chr08 642 669 372885 372912 F 28 100.00 1350 reject_low 12 ALIGNMENT 0 Y12-9i20.p1k chr02 598 62 780445 780444 C 537 0.00 1350 reject_low 3 ALIGNMENT 0 Y12-9i20.p1k chr02 804 678 780331 780330 C 127 0.00 1350 reject_low 4 ALIGNMENT 21 Y12-9i20.p1k chr14 675 616 579935 579994 C 60 88.33 1350 reject_low 10 ALIGNMENT 0 Y12-9i20.p1k chr15 401 62 237225 237224 C 340 0.00 1350 reject_low 1 ALIGNMENT 0 Y12-9i20.p1k chr02 619 62 72407 72406 C 558 0.00 1350 reject_low 8 ALIGNMENT 0 Y12-9i20.p1k chr04 624 62 654385 654384 C 563 0.00 1350 reject_low 5 ALIGNMENT 0 Y12-9i20.p1k chr08 62 620 420561 420560 F 559 0.00 1350 reject_low 9 ALIGNMENT 22 Y12-9i20.p1k chr12 638 672 329736 329770 F 35 97.14 1350 reject_low 11 ALIGNMENT 0 Y12-9i20.p1k chr14 615 62 579995 579994 C 554 0.00 1350 reject_low 10 ALIGNMENT 29 Y12-9i20.p1k chr04 675 625 654334 654384 C 51 96.08 1350 reject_low 5 ALIGNMENT 0 Y12-9i20.p1k chr04 804 676 654335 654334 C 129 0.00 1350 reject_low 5 ALIGNMENT 989 Y12-9i20.q1k chr15 35 1206 231741 232920 F 1172 95.73 1276 accept 0 ALIGNMENT 0 Y12-9i20.p1k chr14 804 676 579936 579935 C 129 0.00 1350 reject_low 10 ALIGNMENT 0 Y12-9i20.p1k chr02 598 62 780409 780408 C 537 0.00 1350 reject_low 4 ALIGNMENT 0 Y12-9i20.p1k chr02 610 62 505249 505248 C 549 0.00 1350 reject_low 6 ALIGNMENT 0 Y12-9i20.p1k chr12 62 637 329736 329735 F 576 0.00 1350 reject_low 11 ALIGNMENT 0 Y12-9i20.p1k chr13 683 804 588653 588652 F 122 0.00 1350 reject_low 2 ALIGNMENT 35 Y12-9i20.p1k chr02 675 599 780368 780444 C 77 92.21 1350 reject_low 3 ALIGNMENT 31 Y12-9i20.p1k chr02 677 599 780330 780408 C 79 89.87 1350 reject_low 4 ALIGNMENT 24 Y12-9i20.p1k chr09 675 611 399990 400054 C 65 89.23 1350 reject_low 7 ALIGNMENT 529 Y12-9i20.p1k chr15 1183 402 236443 237224 C 782 91.30 1350 reject_low 1 ALIGNMENT 25 Y12-9i20.p1k chr02 660 611 505199 505248 C 50 94.00 1350 reject_low 6 ALIGNMENT 0 Y12-9i20.p1k chr08 670 804 372912 372911 F 135 0.00 1350 reject_low 12 ALIGNMENT 0 Y12-9i20.p1k chr09 610 62 400055 400054 C 549 0.00 1350 reject_low 7 ALIGNMENT 0 Y12-9i20.p1k chr12 673 804 329770 329769 F 132 0.00 1350 reject_low 11 ALIGNMENT 25 Y12-9i20.p1k chr02 675 620 72351 72406 C 56 92.86 1350 reject_low 8 ALIGNMENT 0 Y12-9i20.p1k chr02 804 661 505200 505199 C 144 0.00 1350 reject_low 6 ALIGNMENT 0 Y12-9i20.p1k chr02 804 676 780369 780368 C 129 0.00 1350 reject_low 3 ALIGNMENT 23 Y12-9i20.p1k chr08 621 672 420561 420612 F 52 92.31 1350 reject_low 9 ALIGNMENT 723 Y12-9i20.p1k chr15 860 23 236778 237603 C 838 96.90 1350 accept 0 ALIGNMENT 0 Y12-9i20.p1k chr13 62 598 588570 588569 F 537 0.00 1350 reject_low 2 ALIGNMENT 0 Y12-9i20.p1k chr09 804 676 399991 399990 C 129 0.00 1350 reject_low 7 ALIGNMENT 0 Y12-9i20.p1k chr08 673 804 420612 420611 F 132 0.00 1350 reject_low 9 ALIGNMENT 0 Y12-9i20.p1k chr08 62 641 372885 372884 F 580 0.00 1350 reject_low 12 ALIGNMENT 0 Y12-9i20.p1k chr02 804 676 72352 72351 C 129 0.00 1350 reject_low 8 ALIGNMENT 36 Y12-9i20.p1k chr13 599 682 588570 588653 F 84 90.48 1350 reject_low 2 ALIGNMENT 0 Y12-9i21.q1k chr14 357 62 62375 62374 C 296 0.00 1234 reject_low 1 ALIGNMENT 352 Y12-9i21.q1k chr14 774 358 61958 62374 C 417 94.96 1234 reject_low 1 ALIGNMENT 0 Y12-9i21.q1k chr14 830 775 61959 61958 C 56 0.00 1234 reject_low 1 ALIGNMENT 933 Y12-9i21.q1k chr15 1175 32 91634 92766 C 1144 95.45 1234 accept 0 ALIGNMENT 1037 Y12-9i21.p1k chr15 20 1175 87426 88591 F 1156 98.18 1357 accept 0 ALIGNMENT 0 Y12-9i22.q1k chr07 845 536 307184 307183 C 310 0.00 1226 reject_low 1 ALIGNMENT 943 Y12-9i22.p1k chr05 1127 25 36003 37120 C 1103 96.37 1303 accept 0 ALIGNMENT 0 Y12-9i22.q1k chr04 62 508 1321966 1321965 F 447 0.00 1226 reject_low 2 ALIGNMENT 0 Y12-9i22.q1k chr07 501 62 307217 307216 C 440 0.00 1226 reject_low 1 ALIGNMENT 20 Y12-9i22.q1k chr07 535 502 307183 307216 C 34 94.12 1226 reject_low 1 ALIGNMENT 986 Y12-9i22.q1k chr05 36 1226 30981 32170 F 1191 95.63 1226 accept 0 ALIGNMENT 20 Y12-9i22.q1k chr04 509 537 1321966 1321994 F 29 100.00 1226 reject_low 2 ALIGNMENT 0 Y12-9i22.q1k chr04 538 845 1321994 1321993 F 308 0.00 1226 reject_low 2 ALIGNMENT 1019 Y12-9i24.p1k chr10 23 1284 226255 227523 F 1262 95.56 1304 accept_chi 0 ALIGNMENT 925 Y12-9i24.q1k chr11 1083 26 445133 446180 C 1058 97.26 1269 accept_chi 1 ALIGNMENT 373 Y12-9j01.q1k chr07 1033 256 751023 751775 C 778 85.35 1548 accept 0 ALIGNMENT 572 Y12-9j01.p1k chr07 160 940 746433 747219 F 781 92.83 1524 accept 0 ALIGNMENT 1065 Y12-9j02.q1k chr13 32 1244 440111 441334 F 1213 97.11 1359 accept 0 ALIGNMENT 936 Y12-9j02.p1k chr13 1116 21 444972 446088 C 1096 95.89 1316 accept 0 ALIGNMENT 909 Y12-9j03.q1k chr07 1085 32 750866 751936 C 1054 95.54 1305 accept 0 ALIGNMENT 935 Y12-9j03.p1k chr07 19 1174 746304 747487 F 1156 94.72 1341 accept 0 ALIGNMENT 943 Y12-9j05.p1k chr16 1108 34 138461 139544 C 1075 96.28 1364 accept 0 ALIGNMENT 972 Y12-9j05.q1k chr16 39 1137 134838 135947 F 1099 96.45 1400 accept 0 ALIGNMENT 1031 Y12-9j06.p1k chr07 18 1204 1034687 1035887 F 1187 96.55 1408 accept 0 ALIGNMENT 877 Y12-9j06.q1k chr07 1027 33 1038450 1039453 C 995 97.79 1312 accept 0 ALIGNMENT 1010 Y12-9j07.p1k chr13 24 1167 231845 233003 F 1144 97.12 1405 accept 0 ALIGNMENT 1030 Y12-9j07.q1k chr13 1181 38 234907 236066 C 1144 97.55 1336 accept 0 ALIGNMENT 1038 Y12-9j08.q1k chr07 40 1255 766016 767243 F 1216 95.15 1361 accept 0 ALIGNMENT 0 Y12-9j09.p1k chr10 62 899 1680 1679 F 838 0.00 1425 reject_low 261 ALIGNMENT 0 Y12-9j09.p1k chr10 62 575 1932 1931 F 514 0.00 1425 reject_low 139 ALIGNMENT 0 Y12-9j09.p1k chr10 62 575 2148 2147 F 514 0.00 1425 reject_low 361 ALIGNMENT 103 Y12-9j09.p1k chr08 812 1045 1646 1879 F 234 82.05 1425 reject_low 173 ALIGNMENT 0 Y12-9j09.p1k chr09 62 672 1686 1685 F 611 0.00 1425 reject_low 59 ALIGNMENT 141 Y12-9j09.p1k chr10 576 968 1932 2324 F 393 80.15 1425 reject_low 139 ALIGNMENT 0 Y12-9j09.p1k chr07 780 62 1089395 1089394 C 719 0.00 1425 reject_low 132 ALIGNMENT 0 Y12-9j09.p1k chr06 62 575 940 939 F 514 0.00 1425 reject_low 199 ALIGNMENT 43 Y12-9j09.p1k chr12 643 576 1076287 1076354 C 68 89.71 1425|3,0 reject_low 369 ALIGNMENT 324 Y12-9j09.p1k chr09 601 1041 1686 2126 F 441 92.52 1425 reject_low 35 ALIGNMENT 0 Y12-9j09.p1k chr09 62 780 1686 1685 F 719 0.00 1425 reject_low 159 ALIGNMENT 117 Y12-9j09.p1k chr15 881 568 1089229 1089542 C 314 80.89 1425 reject_low 172 ALIGNMENT 0 Y12-9j09.p1k chr12 62 960 1683 1682 F 899 0.00 1425 reject_low 322 ALIGNMENT 0 Y12-9j09.p1k chr13 738 908 2091 2090 F 171 0.00 1425 reject_low 270 ALIGNMENT 70 Y12-9j09.p1k chr07 1021 864 1089226 1089383 C 158 82.28 1425 reject_low 247 ALIGNMENT 0 Y12-9j09.p1k chr13 62 811 1662 1661 F 750 0.00 1425 reject_low 194 ALIGNMENT 0 Y12-9j09.p1k chr16 62 780 1483 1482 F 719 0.00 1425 reject_low 137 ALIGNMENT 820 Y12-9j09.p1k chr10 20 1045 1124 2149 F 1026 93.76 1425 reject_low 11 ALIGNMENT 103 Y12-9j09.p1k chr06 576 901 940 1265 F 326 78.83 1425 reject_low 199 ALIGNMENT 63 Y12-9j09.p1k chr08 737 565 560417 560589 C 173 80.92 1425 reject_low 274 ALIGNMENT 0 Y12-9j09.p1k chr04 563 62 1530238 1530237 C 502 0.00 1425 reject_low 278 ALIGNMENT 0 Y12-9j09.p1k chr12 882 908 7750 7749 F 27 0.00 1425 reject_low 163 ALIGNMENT 0 Y12-9j09.p1k chr08 672 62 560842 560841 C 611 0.00 1425 reject_low 79 ALIGNMENT 0 Y12-9j09.p1k chr16 908 680 945985 945984 C 229 0.00 1425 reject_low 289 ALIGNMENT 0 Y12-9j09.p1k chr02 756 908 2108 2107 F 153 0.00 1425 reject_low 222 ALIGNMENT 0 Y12-9j09.p1k chr08 821 908 1906 1905 F 88 0.00 1425 reject_low 13 ALIGNMENT 154 Y12-9j09.p1k chr10 565 928 1957 2320 F 364 82.42 1425 reject_low 125 ALIGNMENT 67 Y12-9j09.p1k chr10 864 1024 1680 1840 F 161 81.37 1425 reject_low 259 ALIGNMENT 0 Y12-9j09.p1k chr13 62 563 1918 1917 F 502 0.00 1425 reject_low 270 ALIGNMENT 0 Y12-9j09.p1k chr08 564 62 560806 560805 C 503 0.00 1425 reject_low 41 ALIGNMENT 241 Y12-9j09.p1k chr12 565 953 7362 7750 F 389 88.95 1425 reject_low 63 ALIGNMENT 0 Y12-9j09.p1k chr16 908 810 945963 945962 C 99 0.00 1425 reject_low 188 ALIGNMENT 242 Y12-9j09.p1k chr09 673 1021 1686 2034 F 349 91.12 1425 reject_low 59 ALIGNMENT 750 Y12-9j09.q1k chr06 937 37 3053 3987 C 901 95.23 1393 reject_low 18 ALIGNMENT 0 Y12-9j09.p1k chr10 62 780 1669 1668 F 719 0.00 1425 reject_low 160 ALIGNMENT 0 Y12-9j09.p1k chr12 62 708 1683 1682 F 647 0.00 1425 reject_low 88 ALIGNMENT 0 Y12-9j09.p1k chr12 680 908 7728 7727 F 229 0.00 1425 reject_low 285 ALIGNMENT 0 Y12-9j09.p1k chr16 564 62 946387 946386 C 503 0.00 1425 reject_low 78 ALIGNMENT 0 Y12-9j09.p1k chr12 738 908 7750 7749 F 171 0.00 1425 reject_low 269 ALIGNMENT 0 Y12-9j09.p1k chr16 908 882 945963 945962 C 27 0.00 1425 reject_low 155 ALIGNMENT 20 Y12-9j09.p1k chr10 975 1049 2235 2309 F 75 76.00 1425 reject_low 374,392 ALIGNMENT 117 Y12-9j09.p1k chr12 881 568 1069602 1069915 C 314 80.89 1425 reject_low 171 ALIGNMENT 241 Y12-9j09.p1k chr14 565 953 1610 1998 F 389 88.95 1425 reject_low 65 ALIGNMENT 0 Y12-9j09.p1k chr10 620 974 2228 2234 F 355 0.00 1425 reject_low 392 ALIGNMENT 0 Y12-9j09.p1k chr09 620 859 2245 2244 F 240 0.00 1425 reject_low 398 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1069955 1069954 C 503 0.00 1425 reject_low 107 ALIGNMENT 0 Y12-9j09.p1k chr14 62 563 1825 1824 F 502 0.00 1425 reject_low 271 ALIGNMENT 0 Y12-9j09.p1k chr05 908 882 574894 574893 C 27 0.00 1425 reject_low 161 ALIGNMENT 0 Y12-9j09.p1k chr05 899 62 575307 575306 C 838 0.00 1425 reject_low 293 ALIGNMENT 0 Y12-9j09.p1k chr10 62 811 1664 1663 F 750 0.00 1425 reject_low 234 ALIGNMENT 0 Y12-9j09.p1k chr12 960 630 1070027 1076264 C 331 0.00 1425 reject_low 391 ALIGNMENT 70 Y12-9j09.p1k chr05 1021 864 575149 575306 C 158 82.28 1425 reject_low 246 ALIGNMENT 170 Y12-9j09.p1k chr04 917 565 1530064 1530416 C 353 84.42 1425 reject_low 106 ALIGNMENT 779 Y12-9j09.p1k chr12 989 20 1076265 1077234 C 970 93.92 1425 reject_low 4 ALIGNMENT 0 Y12-9j09.p1k chr02 62 863 1497 1496 F 802 0.00 1425 reject_low 221 ALIGNMENT 0 Y12-9j09.p1k chr08 567 62 560695 560694 C 506 0.00 1425 reject_low 177 ALIGNMENT 0 Y12-9j09.p1k chr12 672 62 1076690 1076689 C 611 0.00 1425 reject_low 53 ALIGNMENT 0 Y12-9j09.p1k chr02 62 563 1953 1952 F 502 0.00 1425 reject_low 240 ALIGNMENT 0 Y12-9j09.p1k chr07 908 644 1088993 1088992 C 265 0.00 1425 reject_low 329 ALIGNMENT 50 Y12-9j09.p1k chr02 565 647 2026 2108 F 83 89.16 1425 reject_low 306 ALIGNMENT 0 Y12-9j09.p1k chr05 744 62 575318 575317 C 683 0.00 1425 reject_low 147 ALIGNMENT 73 Y12-9j09.p1k chr10 565 810 2065 2310 F 246 78.86 1425 reject_low 257 ALIGNMENT 0 Y12-9j09.p1k chr16 564 62 946351 946350 C 503 0.00 1425 reject_low 77 ALIGNMENT 0 Y12-9j09.p1k chr09 62 899 1697 1696 F 838 0.00 1425 reject_low 260 ALIGNMENT 52 Y12-9j09.p1k chr15 679 565 1089251 1089365 C 115 84.35 1425 reject_low 305 ALIGNMENT 61 Y12-9j09.p1k chr05 864 1021 1481 1638 F 158 80.38 1425 reject_low 275 ALIGNMENT 30 Y12-9j09.p1k chr05 564 717 1901 2054 F 154 75.32 1425 reject_low 366 ALIGNMENT 155 Y12-9j09.p1k chr12 1045 709 1076353 1076689 C 337 83.09 1425 reject_low 120 ALIGNMENT 238 Y12-9j09.p1k chr12 953 565 1076265 1076653 C 389 88.69 1425|9,0 reject_low 372 ALIGNMENT 102 Y12-9j09.p1k chr16 809 565 945962 946206 C 245 82.86 1425 reject_low 188 ALIGNMENT 168 Y12-9j09.p1k chr05 637 1045 1470 1878 F 409 81.66 1425 reject_low 97 ALIGNMENT 0 Y12-9j09.p1k chr06 62 851 892 891 F 790 0.00 1425 reject_low 92 ALIGNMENT 0 Y12-9j09.p1k chr16 563 62 946028 946027 C 502 0.00 1425 reject_low 358 ALIGNMENT 29 Y12-9j09.p1k chr02 576 606 2073 2103 F 31 100.00 1425 reject_low 367 ALIGNMENT 750 Y12-9j09.q1k chr16 37 937 943227 944161 F 901 95.23 1393 reject_low 10 ALIGNMENT 924 Y12-9j09.q1k chr07 37 1260 1085069 1086330 F 1224 92.40 1393 reject_low 6 ALIGNMENT 142 Y12-9j09.p1k chr05 565 937 1686 2058 F 373 80.97 1425 reject_low 138 ALIGNMENT 53 Y12-9j09.p1k chr16 900 1021 1494 1615 F 122 81.97 1425 reject_low 300 ALIGNMENT 0 Y12-9j09.p1k chr02 720 908 2108 2107 F 189 0.00 1425 reject_low 240 ALIGNMENT 77 Y12-9j09.p1k chr12 864 1045 1694 1875 F 182 81.32 1425 reject_low 223 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 1866 1865 F 503 0.00 1425 reject_low 82 ALIGNMENT 0 Y12-9j09.p1k chr04 575 62 1530154 1530153 C 514 0.00 1425 reject_low 327 ALIGNMENT 64 Y12-9j09.p1k chr14 564 737 1825 1998 F 174 81.03 1425 reject_low 271 ALIGNMENT 238 Y12-9j09.p1k chr12 953 565 1069602 1069990 C 389 88.69 1425 reject_low 70 ALIGNMENT 102 Y12-9j09.p1k chr08 864 1049 1662 1847 F 186 85.48 1425 reject_low 143 ALIGNMENT 0 Y12-9j09.p1k chr07 899 62 1089384 1089383 C 838 0.00 1425 reject_low 294 ALIGNMENT 0 Y12-9j09.p1k chr07 960 62 1089395 1089394 C 899 0.00 1425 reject_low 341 ALIGNMENT 42 Y12-9j09.p1k chr12 961 1021 1683 1743 F 61 90.16 1425 reject_low 322 ALIGNMENT 0 Y12-9j09.p1k chr02 62 636 1486 1485 F 575 0.00 1425 reject_low 93 ALIGNMENT 0 Y12-9j09.p1k chr08 564 62 560554 560553 C 503 0.00 1425 reject_low 319 ALIGNMENT 0 Y12-9j09.p1k chr06 62 600 893 892 F 539 0.00 1425 reject_low 212 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 2065 2064 F 503 0.00 1425 reject_low 257 ALIGNMENT 213 Y12-9j09.p1k chr08 1045 673 560469 560841 C 373 86.86 1425 reject_low 79 ALIGNMENT 0 Y12-9j09.p1k chr10 753 908 2324 2323 F 156 0.00 1425 reject_low 361 ALIGNMENT 0 Y12-9j09.p1k chr04 567 62 1530378 1530377 C 506 0.00 1425 reject_low 170 ALIGNMENT 0 Y12-9j09.p1k chr04 935 62 1530478 1530477 C 874 0.00 1425 reject_low 310 ALIGNMENT 0 Y12-9j09.p1k chr08 62 708 1651 1650 F 647 0.00 1425 reject_low 89 ALIGNMENT 55 Y12-9j09.p1k chr07 679 565 1088992 1089106 C 115 85.22 1425 reject_low 284 ALIGNMENT 0 Y12-9j09.p1k chr07 636 62 1089395 1089394 C 575 0.00 1425 reject_low 31 ALIGNMENT 0 Y12-9j09.p1k chr08 744 908 1937 1936 F 165 0.00 1425 reject_low 290 ALIGNMENT 170 Y12-9j09.p1k chr02 709 1045 1486 1822 F 337 84.57 1425 reject_low 95 ALIGNMENT 0 Y12-9j09.p1k chr12 817 816 2187 7325 F 0 0.00 1425 reject_low 383 ALIGNMENT 0 Y12-9j09.p1k chr15 935 62 1089643 1089642 C 874 0.00 1425 reject_low 317 ALIGNMENT 38 Y12-9j09.p1k chr05 1024 961 575254 575317 C 64 87.50 1425 reject_low 340 ALIGNMENT 0 Y12-9j09.p1k chr09 887 895 2224 2244 F 9 0.00 1425 reject_low 375 ALIGNMENT 240 Y12-9j09.p1k chr15 1045 673 1089281 1089653 C 373 89.28 1425 reject_low 54 ALIGNMENT 74 Y12-9j09.p1k chr02 564 719 1953 2108 F 156 84.62 1425 reject_low 240 ALIGNMENT 91 Y12-9j09.p1k chr05 1045 812 575089 575322 C 234 80.34 1425 reject_low 190 ALIGNMENT 55 Y12-9j09.p1k chr10 565 788 2101 2324 F 224 77.23 1425 reject_low 307 ALIGNMENT 243 Y12-9j09.p1k chr07 1045 673 1089022 1089394 C 373 89.54 1425 reject_low 46 ALIGNMENT 33 Y12-9j09.p1k chr15 629 564 1089229 1089294 C 66 84.85 1425 reject_low 356 ALIGNMENT 776 Y12-9j09.p1k chr12 20 989 6781 7750 F 970 93.81 1425 reject_low 15 ALIGNMENT 0 Y12-9j09.p1k chr09 62 708 1686 1685 F 647 0.00 1425 reject_low 118 ALIGNMENT 0 Y12-9j09.p1k chr04 908 821 1530090 1530089 C 88 0.00 1425 reject_low 213 ALIGNMENT 203 Y12-9j09.p1k chr12 637 1041 1683 2087 F 405 84.69 1425 reject_low 86 ALIGNMENT 43 Y12-9j09.p1k chr12 643 576 1069624 1069691 C 68 89.71 1425 reject_low 331 ALIGNMENT 71 Y12-9j09.p1k chr05 900 1021 1481 1602 F 122 86.89 1425 reject_low 241 ALIGNMENT 0 Y12-9j09.p1k chr08 62 564 1723 1722 F 503 0.00 1425 reject_low 244 ALIGNMENT 0 Y12-9j09.p1k chr08 62 935 1662 1661 F 874 0.00 1425 reject_low 308 ALIGNMENT 0 Y12-9j09.p1k chr12 563 62 1069776 1069775 C 502 0.00 1425 reject_low 279 ALIGNMENT 0 Y12-9j09.p1k chr16 62 708 1483 1482 F 647 0.00 1425 reject_low 114 ALIGNMENT 98 Y12-9j09.p1k chr12 820 568 1069627 1069879 C 253 81.82 1425 reject_low 214 ALIGNMENT 72 Y12-9j09.p1k chr05 576 810 1805 2039 F 235 79.15 1425 reject_low 264 ALIGNMENT 0 Y12-9j09.p1k chr16 774 908 1907 1906 F 135 0.00 1425 reject_low 230 ALIGNMENT 53 Y12-9j09.p1k chr13 900 1021 1678 1799 F 122 81.97 1425 reject_low 297 ALIGNMENT 0 Y12-9j09.p1k chr08 887 908 1900 1899 F 22 0.00 1425 reject_low 157 ALIGNMENT 120 Y12-9j09.p1k chr04 1041 745 1530192 1530488 C 297 81.14 1425 reject_low 146 ALIGNMENT 0 Y12-9j09.p1k chr12 62 600 1683 1682 F 539 0.00 1425 reject_low 76 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 7614 7613 F 503 0.00 1425 reject_low 285 ALIGNMENT 0 Y12-9j09.p1k chr05 863 62 575307 575306 C 802 0.00 1425 reject_low 246 ALIGNMENT 0 Y12-9j09.p1k chr12 908 738 1069603 1069602 C 171 0.00 1425 reject_low 279 ALIGNMENT 0 Y12-9j09.p1k chr16 62 960 1483 1482 F 899 0.00 1425 reject_low 347 ALIGNMENT 236 Y12-9j09.p1k chr10 565 967 1813 2215 F 403 87.84 1425 reject_low 374 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 2082 2081 F 503 0.00 1425 reject_low 263 ALIGNMENT 206 Y12-9j09.p1k chr08 709 967 1651 1909 F 259 94.59 1425 reject_low 89 ALIGNMENT 91 Y12-9j09.p1k chr12 1045 812 1069798 1070031 C 234 80.34 1425|0,5 reject_low 384,385 ALIGNMENT 120 Y12-9j09.p1k chr13 568 881 1778 2091 F 314 81.21 1425 reject_low 164 ALIGNMENT 0 Y12-9j09.p1k chr10 789 908 2324 2323 F 120 0.00 1425 reject_low 307 ALIGNMENT 120 Y12-9j09.p1k chr12 1041 745 1069730 1070026 C 297 81.14 1425 reject_low 388 ALIGNMENT 223 Y12-9j09.p1k chr16 1045 601 946050 946494 C 445 84.72 1425 reject_low 74 ALIGNMENT 33 Y12-9j09.p1k chr12 564 629 2150 2215 F 66 84.85 1425 reject_low 390 ALIGNMENT 64 Y12-9j09.p1k chr05 737 564 574893 575066 C 174 81.03 1425 reject_low 267 ALIGNMENT 0 Y12-9j09.p1k chr12 810 908 7750 7749 F 99 0.00 1425 reject_low 184 ALIGNMENT 0 Y12-9j09.p1k chr16 563 62 946136 946135 C 502 0.00 1425 reject_low 273 ALIGNMENT 0 Y12-9j09.p1k chr05 62 600 1470 1469 F 539 0.00 1425 reject_low 40 ALIGNMENT 47 Y12-9j09.p1k chr08 961 1041 1651 1731 F 81 86.42 1425 reject_low 282 ALIGNMENT 0 Y12-9j09.p1k chr12 644 908 7728 7727 F 265 0.00 1425 reject_low 330 ALIGNMENT 158 Y12-9j09.p1k chr14 709 1045 1574 1910 F 337 83.38 1425 reject_low 113 ALIGNMENT 90 Y12-9j09.p1k chr12 576 773 2018 2215 F 198 83.84 1425 reject_low 377 ALIGNMENT 0 Y12-9j09.p1k chr08 644 908 1909 1908 F 265 0.00 1425 reject_low 348 ALIGNMENT 0 Y12-9j09.p1k chr16 62 935 1494 1493 F 874 0.00 1425 reject_low 318 ALIGNMENT 53 Y12-9j09.p1k chr14 900 1021 1585 1706 F 122 81.97 1425 reject_low 298 ALIGNMENT 0 Y12-9j09.p1k chr05 780 62 575318 575317 C 719 0.00 1425 reject_low 131 ALIGNMENT 0 Y12-9j09.p1k chr09 772 908 2288 2287 F 137 0.00 1425 reject_low 263 ALIGNMENT 173 Y12-9j09.p1k chr13 565 917 1739 2091 F 353 84.70 1425 reject_low 102 ALIGNMENT 0 Y12-9j09.p1k chr16 62 744 1483 1482 F 683 0.00 1425 reject_low 153 ALIGNMENT 158 Y12-9j09.p1k chr12 709 1045 7326 7662 F 337 83.38 1425 reject_low 380 ALIGNMENT 55 Y12-9j09.p1k chr16 679 565 945984 946098 C 115 85.22 1425 reject_low 289 ALIGNMENT 0 Y12-9j09.p1k chr15 564 62 1089366 1089365 C 503 0.00 1425 reject_low 305 ALIGNMENT 0 Y12-9j09.p1k chr05 790 908 2054 2053 F 119 0.00 1425 reject_low 265 ALIGNMENT 0 Y12-9j09.p1k chr09 821 859 2230 2244 F 39 0.00 1425 reject_low 393 ALIGNMENT 0 Y12-9j09.p1k chr12 908 644 1069625 1069624 C 265 0.00 1425 reject_low 331 ALIGNMENT 0 Y12-9j09.p1k chr02 62 780 1486 1485 F 719 0.00 1425 reject_low 242 ALIGNMENT 88 Y12-9j09.p1k chr02 565 755 1918 2108 F 191 84.29 1425 reject_low 222 ALIGNMENT 0 Y12-9j09.p1k chr16 899 62 946484 946483 C 838 0.00 1425 reject_low 255 ALIGNMENT 0 Y12-9j09.p1k chr12 62 567 1938 1937 F 506 0.00 1425 reject_low 383 ALIGNMENT 0 Y12-9j09.p1k chr05 866 908 2058 2057 F 43 0.00 1425 reject_low 217 ALIGNMENT 0 Y12-9j09.p1k chr13 62 575 1894 1893 F 514 0.00 1425 reject_low 228 ALIGNMENT 91 Y12-9j09.p1k chr16 812 1045 1478 1711 F 234 80.34 1425 reject_low 197 ALIGNMENT 240 Y12-9j09.p1k chr12 1045 673 1069654 1070026 C 373 89.28 1425|0,4 reject_low 371 ALIGNMENT 38 Y12-9j09.p1k chr15 1024 961 1089590 1089653 C 64 87.50 1425 reject_low 346 ALIGNMENT 775 Y12-9j09.q1k chr10 937 37 5338 6271 C 901 96.12 1393 reject_low 11 ALIGNMENT 0 Y12-9j09.p1k chr15 908 630 1089230 1089229 C 279 0.00 1425 reject_low 356 ALIGNMENT 0 Y12-9j09.p1k chr08 908 810 560418 560417 C 99 0.00 1425 reject_low 174 ALIGNMENT 0 Y12-9j09.p1k chr08 899 62 560831 560830 C 838 0.00 1425 reject_low 295 ALIGNMENT 54 Y12-9j09.p1k chr06 961 1045 893 977 F 85 88.24 1425 reject_low 262 ALIGNMENT 0 Y12-9j09.p1k chr12 640 641 1070023 1076289 C 0 0.00 1425 reject_low 369 ALIGNMENT 75 Y12-9j09.p1k chr06 637 1009 893 1265 F 373 74.80 1425 reject_low 256 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1076618 1076617 C 503 0.00 1425 reject_low 379 ALIGNMENT 132 Y12-9j09.p1k chr08 881 568 560417 560730 C 314 82.48 1425 reject_low 145 ALIGNMENT 0 Y12-9j09.p1k chr09 62 863 1697 1696 F 802 0.00 1425 reject_low 258 ALIGNMENT 91 Y12-9j09.p1k chr07 1045 812 1089166 1089399 C 234 80.34 1425 reject_low 191 ALIGNMENT 243 Y12-9j09.p1k chr12 673 1045 7326 7698 F 373 89.54 1425|4,0 reject_low 370 ALIGNMENT 0 Y12-9j09.p1k chr09 812 859 2257 2244 F 48 0.00 1425 reject_low 395 ALIGNMENT 155 Y12-9j09.p1k chr15 1045 709 1089317 1089653 C 337 83.09 1425 reject_low 121 ALIGNMENT 0 Y12-9j09.p1k chr15 811 62 1089659 1089658 C 750 0.00 1425 reject_low 196 ALIGNMENT 782 Y12-9j09.p1k chr07 989 20 1088970 1089939 C 970 94.02 1425 reject_low 6 ALIGNMENT 0 Y12-9j09.p1k chr13 62 564 1847 1846 F 503 0.00 1425 reject_low 185 ALIGNMENT 229 Y12-9j09.p1k chr02 565 1024 1558 2017 F 460 84.78 1425 reject_low 73 ALIGNMENT 61 Y12-9j09.p1k chr12 737 564 1069602 1069775 C 174 80.46 1425 reject_low 279 ALIGNMENT 102 Y12-9j09.p1k chr07 809 565 1088970 1089214 C 245 82.86 1425 reject_low 183 ALIGNMENT 0 Y12-9j09.p1k chr10 62 960 1669 1668 F 899 0.00 1425 reject_low 364 ALIGNMENT 122 Y12-9j09.p1k chr08 1041 781 560581 560841 C 261 83.14 1425 reject_low 144 ALIGNMENT 251 Y12-9j09.p1k chr08 745 1202 1651 2099 F 458 86.90 1425 reject_low 29 ALIGNMENT 90 Y12-9j09.p1k chr16 576 773 1710 1907 F 198 83.84 1425 reject_low 230 ALIGNMENT 0 Y12-9j09.p1k chr12 676 677 1070023 1076289 C 0 0.00 1425 reject_low 371 ALIGNMENT 0 Y12-9j09.p1k chr13 821 908 2066 2065 F 88 0.00 1425 reject_low 204 ALIGNMENT 155 Y12-9j09.p1k chr04 1045 709 1530152 1530488 C 337 83.09 1425 reject_low 117 ALIGNMENT 202 Y12-9j09.p1k chr10 560 1000 1880 2320 F 441 83.45 1425 reject_low 81 ALIGNMENT 53 Y12-9j09.p1k chr04 1021 900 1530356 1530477 C 122 81.97 1425 reject_low 292 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1069847 1069846 C 503 0.00 1425 reject_low 209 ALIGNMENT 731 Y12-9j09.q1k chr02 941 45 4212 5142 C 897 94.65 1393 reject_low 16 ALIGNMENT 0 Y12-9j09.p1k chr14 62 960 1574 1573 F 899 0.00 1425 reject_low 345 ALIGNMENT 206 Y12-9j09.p1k chr16 1041 637 946090 946494 C 405 84.94 1425 reject_low 84 ALIGNMENT 48 Y12-9j09.p1k chr05 1021 936 575221 575306 C 86 86.05 1425 reject_low 311 ALIGNMENT 0 Y12-9j09.p1k chr12 908 882 1069603 1069602 C 27 0.00 1425 reject_low 171 ALIGNMENT 173 Y12-9j09.p1k chr05 917 565 574893 575245 C 353 84.70 1425 reject_low 99 ALIGNMENT 0 Y12-9j09.p1k chr07 908 680 1088993 1088992 C 229 0.00 1425 reject_low 284 ALIGNMENT 0 Y12-9j09.p1k chr08 908 738 560418 560417 C 171 0.00 1425 reject_low 274 ALIGNMENT 0 Y12-9j09.p1k chr08 908 644 560440 560439 C 265 0.00 1425 reject_low 359 ALIGNMENT 170 Y12-9j09.p1k chr12 917 565 1069602 1069954 C 353 84.42 1425 reject_low 107 ALIGNMENT 0 Y12-9j09.p1k chr08 908 882 560418 560417 C 27 0.00 1425 reject_low 145 ALIGNMENT 0 Y12-9j09.p1k chr15 564 62 1089582 1089581 C 503 0.00 1425 reject_low 108 ALIGNMENT 48 Y12-9j09.p1k chr02 936 1021 1497 1582 F 86 86.05 1425 reject_low 309 ALIGNMENT 0 Y12-9j09.p1k chr16 738 908 1907 1906 F 171 0.00 1425 reject_low 272 ALIGNMENT 0 Y12-9j09.p1k chr02 62 564 1630 1629 F 503 0.00 1425 reject_low 44 ALIGNMENT 0 Y12-9j09.p1k chr16 744 62 946495 946494 C 683 0.00 1425 reject_low 127 ALIGNMENT 0 Y12-9j09.p1k chr04 811 62 1530494 1530493 C 750 0.00 1425 reject_low 189 ALIGNMENT 130 Y12-9j09.p1k chr15 1045 781 1089389 1089653 C 265 83.77 1425 reject_low 136 ALIGNMENT 33 Y12-9j09.p1k chr12 564 629 7685 7750 F 66 84.85 1425 reject_low 352 ALIGNMENT 0 Y12-9j09.p1k chr08 908 630 560418 560417 C 279 0.00 1425 reject_low 365 ALIGNMENT 0 Y12-9j09.p1k chr12 563 62 1076439 1076438 C 502 0.00 1425 reject_low 388 ALIGNMENT 0 Y12-9j09.p1k chr12 960 62 1076690 1076689 C 899 0.00 1425 reject_low 343 ALIGNMENT 0 Y12-9j09.p1k chr10 857 908 2320 2319 F 52 0.00 1425 reject_low 180 ALIGNMENT 310 Y12-9j09.p1k chr12 637 1202 7326 7906 F 566 86.04 1425|4,0 reject_low 368 ALIGNMENT 38 Y12-9j09.p1k chr16 961 1024 1483 1546 F 64 87.50 1425 reject_low 347 ALIGNMENT 0 Y12-9j09.p1k chr08 780 62 560842 560841 C 719 0.00 1425 reject_low 144 ALIGNMENT 38 Y12-9j09.p1k chr07 1024 961 1089331 1089394 C 64 87.50 1425 reject_low 341 ALIGNMENT 0 Y12-9j09.p1k chr07 811 62 1089400 1089399 C 750 0.00 1425 reject_low 191 ALIGNMENT 101 Y12-9j09.p1k chr13 568 820 1814 2066 F 253 82.21 1425 reject_low 204 ALIGNMENT 120 Y12-9j09.p1k chr12 1041 745 1076393 1076689 C 297 81.14 1425 reject_low 149 ALIGNMENT 0 Y12-9j09.p1k chr16 908 738 945963 945962 C 171 0.00 1425 reject_low 273 ALIGNMENT 0 Y12-9j09.p1k chr05 575 62 575091 575090 C 514 0.00 1425 reject_low 225 ALIGNMENT 64 Y12-9j09.p1k chr16 564 737 1734 1907 F 174 81.03 1425 reject_low 272 ALIGNMENT 61 Y12-9j09.p1k chr12 737 564 1076265 1076438 C 174 80.46 1425 reject_low 388 ALIGNMENT 240 Y12-9j09.p1k chr04 1045 673 1530116 1530488 C 373 89.28 1425 reject_low 52 ALIGNMENT 220 Y12-9j09.p1k chr12 601 1045 1683 2127 F 445 84.49 1425 reject_low 76 ALIGNMENT 147 Y12-9j09.p1k chr10 745 1041 1669 1965 F 297 84.18 1425 reject_low 124 ALIGNMENT 77 Y12-9j09.p1k chr16 1045 864 946302 946483 C 182 81.32 1425 reject_low 224 ALIGNMENT 0 Y12-9j09.p1k chr13 62 935 1678 1677 F 874 0.00 1425 reject_low 315 ALIGNMENT 360 Y12-9j09.p1k chr12 565 1202 1719 2371 F 638 86.68 1425 reject_low 21 ALIGNMENT 0 Y12-9j09.p1k chr12 62 567 1902 1901 F 506 0.00 1425 reject_low 386 ALIGNMENT 0 Y12-9j09.p1k chr05 563 62 574959 574958 C 502 0.00 1425 reject_low 350 ALIGNMENT 70 Y12-9j09.p1k chr09 565 771 2082 2288 F 207 80.19 1425 reject_low 263 ALIGNMENT 163 Y12-9j09.p1k chr06 852 1045 892 1085 F 194 95.36 1425 reject_low 92 ALIGNMENT 101 Y12-9j09.p1k chr12 568 820 1938 2190 F 253 82.21 1425|0,4 reject_low 383 ALIGNMENT 0 Y12-9j09.p1k chr12 811 810 1070032 1076264 C 2 0.00 1425 reject_low 384 ALIGNMENT 0 Y12-9j09.p1k chr02 62 575 1821 1820 F 514 0.00 1425 reject_low 167 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 1794 1793 F 503 0.00 1425 reject_low 55 ALIGNMENT 779 Y12-9j09.p1k chr04 989 20 1530064 1531033 C 970 93.92 1425 reject_low 3 ALIGNMENT 120 Y12-9j09.p1k chr07 881 568 1088970 1089283 C 314 81.21 1425 reject_low 162 ALIGNMENT 254 Y12-9j09.p1k chr09 637 1041 1686 2090 F 405 88.89 1425 reject_low 42 ALIGNMENT 68 Y12-9j09.p1k chr12 900 1024 1694 1818 F 125 85.60 1425 reject_low 254 ALIGNMENT 0 Y12-9j09.p1k chr02 62 564 2026 2025 F 503 0.00 1425 reject_low 306 ALIGNMENT 130 Y12-9j09.p1k chr04 1045 781 1530224 1530488 C 265 83.77 1425 reject_low 130 ALIGNMENT 121 Y12-9j09.p1k chr05 565 901 1722 2058 F 337 80.42 1425 reject_low 158 ALIGNMENT 55 Y12-9j09.p1k chr12 565 679 7614 7728 F 115 85.22 1425 reject_low 285 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 1971 1970 F 503 0.00 1425 reject_low 382 ALIGNMENT 48 Y12-9j09.p1k chr08 1021 936 560745 560830 C 86 86.05 1425 reject_low 313 ALIGNMENT 0 Y12-9j09.p1k chr06 62 575 1048 1047 F 514 0.00 1425 reject_low 326 ALIGNMENT 0 Y12-9j09.p1k chr04 564 62 1530453 1530452 C 503 0.00 1425 reject_low 69 ALIGNMENT 0 Y12-9j09.p1k chr14 62 708 1574 1573 F 647 0.00 1425 reject_low 113 ALIGNMENT 0 Y12-9j09.p1k chr10 62 600 1669 1668 F 539 0.00 1425 reject_low 19 ALIGNMENT 49 Y12-9j09.p1k chr08 679 565 560439 560553 C 115 83.48 1425 reject_low 319 ALIGNMENT 102 Y12-9j09.p1k chr12 565 809 1971 2215 F 245 82.86 1425 reject_low 382 ALIGNMENT 0 Y12-9j09.p1k chr02 62 567 1597 1596 F 506 0.00 1425 reject_low 57 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 1830 1829 F 503 0.00 1425 reject_low 72 ALIGNMENT 0 Y12-9j09.p1k chr08 811 908 1932 1931 F 98 0.00 1425 reject_low 216 ALIGNMENT 0 Y12-9j09.p1k chr12 62 575 7553 7552 F 514 0.00 1425 reject_low 227 ALIGNMENT 158 Y12-9j09.p1k chr07 1045 709 1089058 1089394 C 337 83.38 1425 reject_low 111 ALIGNMENT 0 Y12-9j09.p1k chr13 62 863 1678 1677 F 802 0.00 1425 reject_low 250 ALIGNMENT 207 Y12-9j09.p1k chr02 673 1045 1486 1858 F 373 86.33 1425 reject_low 83 ALIGNMENT 0 Y12-9j09.p1k chr04 708 62 1530489 1530488 C 647 0.00 1425 reject_low 117 ALIGNMENT 0 Y12-9j09.p1k chr02 607 908 2103 2102 F 302 0.00 1425 reject_low 367 ALIGNMENT 0 Y12-9j09.p1k chr16 62 636 1483 1482 F 575 0.00 1425 reject_low 25 ALIGNMENT 0 Y12-9j09.p1k chr09 62 563 2189 2188 F 502 0.00 1425 reject_low 398 ALIGNMENT 347 Y12-9j09.p1k chr16 1158 565 945852 946458 C 594 87.21 1425 reject_low 32 ALIGNMENT 0 Y12-9j09.p1k chr08 62 960 1651 1650 F 899 0.00 1425 reject_low 282 ALIGNMENT 0 Y12-9j09.p1k chr07 575 62 1089060 1089059 C 514 0.00 1425 reject_low 329 ALIGNMENT 52 Y12-9j09.p1k chr04 679 565 1530086 1530200 C 115 84.35 1425 reject_low 303 ALIGNMENT 102 Y12-9j09.p1k chr14 565 809 1754 1998 F 245 82.86 1425 reject_low 186 ALIGNMENT 0 Y12-9j09.p1k chr12 708 62 1076690 1076689 C 647 0.00 1425 reject_low 120 ALIGNMENT 0 Y12-9j09.p1k chr16 908 630 945963 945962 C 279 0.00 1425 reject_low 358 ALIGNMENT 0 Y12-9j09.p1k chr08 62 899 1662 1661 F 838 0.00 1425 reject_low 238 ALIGNMENT 55 Y12-9j09.p1k chr05 679 565 574915 575029 C 115 85.22 1425 reject_low 283 ALIGNMENT 91 Y12-9j09.p1k chr04 1045 812 1530260 1530493 C 234 80.34 1425 reject_low 189 ALIGNMENT 0 Y12-9j09.p1k chr16 672 62 946495 946494 C 611 0.00 1425 reject_low 58 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 1813 1812 F 503 0.00 1425 reject_low 374 ALIGNMENT 0 Y12-9j09.p1k chr15 672 62 1089654 1089653 C 611 0.00 1425 reject_low 54 ALIGNMENT 0 Y12-9j09.p1k chr05 62 935 1481 1480 F 874 0.00 1425 reject_low 324 ALIGNMENT 0 Y12-9j09.p1k chr10 62 559 1880 1879 F 498 0.00 1425 reject_low 81 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 1957 1956 F 503 0.00 1425 reject_low 125 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 1791 1790 F 503 0.00 1425 reject_low 80 ALIGNMENT 0 Y12-9j09.p1k chr14 62 636 1574 1573 F 575 0.00 1425 reject_low 24 ALIGNMENT 0 Y12-9j09.p1k chr15 563 62 1089403 1089402 C 502 0.00 1425 reject_low 280 ALIGNMENT 0 Y12-9j09.p1k chr12 935 62 1076679 1076678 C 874 0.00 1425 reject_low 314 ALIGNMENT 114 Y12-9j09.p1k chr08 809 565 560417 560661 C 245 84.49 1425 reject_low 174 ALIGNMENT 0 Y12-9j09.p1k chr04 564 62 1530309 1530308 C 503 0.00 1425 reject_low 208 ALIGNMENT 0 Y12-9j09.p1k chr08 62 811 1646 1645 F 750 0.00 1425 reject_low 173 ALIGNMENT 96 Y12-9j09.p1k chr08 601 850 1651 1900 F 250 81.60 1425 reject_low 219 ALIGNMENT 0 Y12-9j09.p1k chr12 62 811 1678 1677 F 750 0.00 1425 reject_low 169 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 7362 7361 F 503 0.00 1425 reject_low 63 ALIGNMENT 0 Y12-9j09.p1k chr14 738 908 1998 1997 F 171 0.00 1425 reject_low 271 ALIGNMENT 0 Y12-9j09.p1k chr15 908 882 1089230 1089229 C 27 0.00 1425 reject_low 172 ALIGNMENT 222 Y12-9j09.p1k chr16 989 565 945962 946386 C 425 85.65 1425 reject_low 78 ALIGNMENT 0 Y12-9j09.p1k chr02 851 908 2095 2094 F 58 0.00 1425 reject_low 167 ALIGNMENT 61 Y12-9j09.p1k chr09 900 1041 1697 1838 F 142 81.69 1425 reject_low 260 ALIGNMENT 0 Y12-9j09.p1k chr05 564 62 575030 575029 C 503 0.00 1425 reject_low 283 ALIGNMENT 0 Y12-9j09.p1k chr12 575 62 1069692 1069691 C 514 0.00 1425 reject_low 331 ALIGNMENT 0 Y12-9j09.p1k chr06 754 908 1261 1260 F 155 0.00 1425 reject_low 362 ALIGNMENT 0 Y12-9j09.p1k chr12 821 908 7725 7724 F 88 0.00 1425 reject_low 203 ALIGNMENT 142 Y12-9j09.p1k chr09 576 850 1949 2223 F 275 85.82 1425 reject_low 394 ALIGNMENT 0 Y12-9j09.p1k chr15 908 810 1089230 1089229 C 99 0.00 1425 reject_low 210 ALIGNMENT 55 Y12-9j09.p1k chr14 565 679 1862 1976 F 115 85.22 1425 reject_low 287 ALIGNMENT 0 Y12-9j09.p1k chr15 575 62 1089427 1089426 C 514 0.00 1425 reject_low 237 ALIGNMENT 23 Y12-9j09.p1k chr09 896 949 2245 2298 F 54 81.48 1425|9,0 reject_low 375,393,394,395,396,397,398 ALIGNMENT 0 Y12-9j09.p1k chr08 62 564 1687 1686 F 503 0.00 1425 reject_low 216 ALIGNMENT 97 Y12-9j09.p1k chr05 812 1021 1465 1674 F 210 82.86 1425 reject_low 198 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1722 1721 F 503 0.00 1425 reject_low 158 ALIGNMENT 0 Y12-9j09.p1k chr12 636 62 1076690 1076689 C 575 0.00 1425 reject_low 27 ALIGNMENT 0 Y12-9j09.p1k chr16 811 62 946500 946499 C 750 0.00 1425 reject_low 154 ALIGNMENT 61 Y12-9j09.p1k chr15 737 564 1089229 1089402 C 174 80.46 1425 reject_low 280 ALIGNMENT 0 Y12-9j09.p1k chr12 738 744 2216 7325 F 7 0.00 1425 reject_low 387 ALIGNMENT 194 Y12-9j09.p1k chr16 1045 709 946158 946494 C 337 86.94 1425 reject_low 87 ALIGNMENT 241 Y12-9j09.p1k chr07 953 565 1088970 1089358 C 389 88.95 1425 reject_low 62 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 1974 1973 F 503 0.00 1425 reject_low 393 ALIGNMENT 0 Y12-9j09.p1k chr07 575 62 1089168 1089167 C 514 0.00 1425 reject_low 226 ALIGNMENT 40 Y12-9j09.p1k chr08 576 643 1842 1909 F 68 88.24 1425 reject_low 348 ALIGNMENT 0 Y12-9j09.p1k chr08 960 62 560842 560841 C 899 0.00 1425 reject_low 342 ALIGNMENT 0 Y12-9j09.p1k chr12 908 810 1069603 1069602 C 99 0.00 1425 reject_low 209 ALIGNMENT 0 Y12-9j09.p1k chr12 563 62 1076331 1076330 C 502 0.00 1425 reject_low 391 ALIGNMENT 0 Y12-9j09.p1k chr05 564 62 575246 575245 C 503 0.00 1425 reject_low 99 ALIGNMENT 0 Y12-9j09.p1k chr08 620 908 1921 1920 F 289 0.00 1425 reject_low 360 ALIGNMENT 241 Y12-9j09.p1k chr13 565 953 1703 2091 F 389 88.95 1425 reject_low 64 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1506 1505 F 503 0.00 1425 reject_low 39 ALIGNMENT 26 Y12-9j09.p1k chr09 860 913 2245 2298 F 54 83.33 1425|0,9 reject_low 393,394,395,396,397,398 ALIGNMENT 0 Y12-9j09.p1k chr06 62 636 893 892 F 575 0.00 1425 reject_low 256 ALIGNMENT 0 Y12-9j09.p1k chr07 908 774 1088971 1088970 C 135 0.00 1425 reject_low 226 ALIGNMENT 129 Y12-9j09.p1k chr08 637 886 1651 1900 F 250 85.60 1425 reject_low 157 ALIGNMENT 238 Y12-9j09.p1k chr15 953 565 1089229 1089617 C 389 88.69 1425 reject_low 71 ALIGNMENT 0 Y12-9j09.p1k chr05 708 62 575318 575317 C 647 0.00 1425 reject_low 110 ALIGNMENT 0 Y12-9j09.p1k chr04 672 62 1530489 1530488 C 611 0.00 1425 reject_low 52 ALIGNMENT 99 Y12-9j09.p1k chr12 809 565 1069602 1069846 C 245 82.45 1425 reject_low 209 ALIGNMENT 168 Y12-9j09.p1k chr02 568 971 1705 2108 F 404 82.18 1425 reject_low 109 ALIGNMENT 241 Y12-9j09.p1k chr16 565 953 1519 1907 F 389 88.95 1425 reject_low 66 ALIGNMENT 0 Y12-9j09.p1k chr12 908 774 1069603 1069602 C 135 0.00 1425 reject_low 236 ALIGNMENT 151 Y12-9j09.p1k chr02 565 922 1738 2095 F 358 82.40 1425 reject_low 126 ALIGNMENT 0 Y12-9j09.p1k chr12 630 908 7750 7749 F 279 0.00 1425 reject_low 352 ALIGNMENT 0 Y12-9j09.p1k chr16 575 62 946052 946051 C 514 0.00 1425 reject_low 336 ALIGNMENT 0 Y12-9j09.p1k chr05 908 810 574894 574893 C 99 0.00 1425 reject_low 182 ALIGNMENT 0 Y12-9j09.p1k chr14 62 780 1574 1573 F 719 0.00 1425 reject_low 135 ALIGNMENT 0 Y12-9j09.p1k chr12 680 708 2194 7325 F 29 0.00 1425 reject_low 380 ALIGNMENT 281 Y12-9j09.p1k chr05 565 1045 1542 2022 F 481 87.53 1425 reject_low 38 ALIGNMENT 0 Y12-9j09.p1k chr05 908 738 574894 574893 C 171 0.00 1425 reject_low 267 ALIGNMENT 0 Y12-9j09.p1k chr15 780 62 1089654 1089653 C 719 0.00 1425 reject_low 136 ALIGNMENT 0 Y12-9j09.p1k chr07 744 62 1089395 1089394 C 683 0.00 1425 reject_low 148 ALIGNMENT 0 Y12-9j09.p1k chr02 62 564 1522 1521 F 503 0.00 1425 reject_low 34 ALIGNMENT 985 Y12-9j09.q1k chr05 1260 37 4642 5854 C 1224 94.53 1393 ambiguous_tel 1 ALIGNMENT 38 Y12-9j09.p1k chr12 961 1024 7326 7389 F 64 87.50 1425 reject_low 390 ALIGNMENT 133 Y12-9j09.p1k chr05 745 1024 1470 1749 F 280 83.57 1425 reject_low 141 ALIGNMENT 0 Y12-9j09.p1k chr07 908 810 1088971 1088970 C 99 0.00 1425 reject_low 183 ALIGNMENT 0 Y12-9j09.p1k chr05 563 62 575067 575066 C 502 0.00 1425 reject_low 267 ALIGNMENT 70 Y12-9j09.p1k chr12 1021 864 1076521 1076678 C 158 82.28 1425 reject_low 249 ALIGNMENT 32 Y12-9j09.p1k chr09 564 619 2189 2244 F 56 87.50 1425 reject_low 398 ALIGNMENT 0 Y12-9j09.p1k chr08 62 564 1759 1758 F 503 0.00 1425 reject_low 290 ALIGNMENT 38 Y12-9j09.p1k chr12 1024 961 1076626 1076689 C 64 87.50 1425 reject_low 343 ALIGNMENT 0 Y12-9j09.p1k chr13 882 908 2091 2090 F 27 0.00 1425 reject_low 164 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1076510 1076509 C 503 0.00 1425 reject_low 384 ALIGNMENT 43 Y12-9j09.p1k chr14 576 643 1909 1976 F 68 89.71 1425 reject_low 333 ALIGNMENT 130 Y12-9j09.p1k chr13 781 1045 1667 1931 F 265 83.77 1425 reject_low 134 ALIGNMENT 0 Y12-9j09.p1k chr12 630 960 2216 7325 F 331 0.00 1425 reject_low 390 ALIGNMENT 0 Y12-9j09.p1k chr13 630 908 2091 2090 F 279 0.00 1425 reject_low 354 ALIGNMENT 0 Y12-9j09.p1k chr13 644 908 2069 2068 F 265 0.00 1425 reject_low 332 ALIGNMENT 0 Y12-9j09.p1k chr08 62 672 1651 1650 F 611 0.00 1425 reject_low 122 ALIGNMENT 128 Y12-9j09.p1k chr06 709 1045 893 1229 F 337 80.42 1425 reject_low 142 ALIGNMENT 0 Y12-9j09.p1k chr12 575 62 1069800 1069799 C 514 0.00 1425 reject_low 236 ALIGNMENT 0 Y12-9j09.p1k chr16 636 62 946495 946494 C 575 0.00 1425 reject_low 84 ALIGNMENT 53 Y12-9j09.p1k chr09 936 1041 1697 1802 F 106 83.96 1425 reject_low 276 ALIGNMENT 185 Y12-9j09.p1k chr16 917 576 945962 946303 C 342 86.26 1425 reject_low 94 ALIGNMENT 99 Y12-9j09.p1k chr12 809 565 1076265 1076509 C 245 82.45 1425 reject_low 384 ALIGNMENT 0 Y12-9j09.p1k chr04 908 738 1530065 1530064 C 171 0.00 1425 reject_low 278 ALIGNMENT 42 Y12-9j09.p1k chr05 936 1021 1481 1566 F 86 83.72 1425 reject_low 324 ALIGNMENT 67 Y12-9j09.p1k chr09 864 1024 1697 1857 F 161 81.37 1425 reject_low 258 ALIGNMENT 0 Y12-9j09.p1k chr12 908 821 1069628 1069627 C 88 0.00 1425 reject_low 214 ALIGNMENT 0 Y12-9j09.p1k chr14 774 908 1998 1997 F 135 0.00 1425 reject_low 229 ALIGNMENT 0 Y12-9j09.p1k chr13 810 908 2091 2090 F 99 0.00 1425 reject_low 185 ALIGNMENT 33 Y12-9j09.p1k chr16 564 629 1842 1907 F 66 84.85 1425 reject_low 357 ALIGNMENT 0 Y12-9j09.p1k chr12 62 672 1683 1682 F 611 0.00 1425 reject_low 67 ALIGNMENT 0 Y12-9j09.p1k chr10 62 708 1669 1668 F 647 0.00 1425 reject_low 119 ALIGNMENT 1052 Y12-9j09.q1k chr12 37 1260 1065812 1067041 F 1224 95.67 1393 ambiguous_tel 0 ALIGNMENT 0 Y12-9j09.p1k chr15 564 62 1089618 1089617 C 503 0.00 1425 reject_low 71 ALIGNMENT 776 Y12-9j09.p1k chr14 20 989 1029 1998 F 970 93.81 1425 reject_low 8 ALIGNMENT 42 Y12-9j09.p1k chr16 1021 961 946434 946494 C 61 90.16 1425 reject_low 323 ALIGNMENT 0 Y12-9j09.p1k chr12 563 62 1069668 1069667 C 502 0.00 1425 reject_low 353 ALIGNMENT 0 Y12-9j09.p1k chr13 62 708 1667 1666 F 647 0.00 1425 reject_low 112 ALIGNMENT 70 Y12-9j09.p1k chr12 1021 864 1069858 1070015 C 158 82.28 1425|0,9 reject_low 389 ALIGNMENT 0 Y12-9j09.p1k chr13 680 908 2069 2068 F 229 0.00 1425 reject_low 286 ALIGNMENT 151 Y12-9j09.p1k chr02 560 886 1769 2095 F 327 83.79 1425 reject_low 115 ALIGNMENT 0 Y12-9j09.p1k chr15 899 62 1089643 1089642 C 838 0.00 1425 reject_low 299 ALIGNMENT 0 Y12-9j09.p1k chr07 564 62 1089215 1089214 C 503 0.00 1425 reject_low 183 ALIGNMENT 0 Y12-9j09.p1k chr14 62 567 1721 1720 F 506 0.00 1425 reject_low 205 ALIGNMENT 0 Y12-9j09.p1k chr09 62 960 1686 1685 F 899 0.00 1425 reject_low 363 ALIGNMENT 0 Y12-9j09.p1k chr15 863 62 1089643 1089642 C 802 0.00 1425 reject_low 252 ALIGNMENT 0 Y12-9j09.p1k chr08 564 62 560770 560769 C 503 0.00 1425 reject_low 90 ALIGNMENT 120 Y12-9j09.p1k chr16 745 1041 1483 1779 F 297 81.14 1425 reject_low 153 ALIGNMENT 0 Y12-9j09.p1k chr08 575 62 560615 560614 C 514 0.00 1425 reject_low 220 ALIGNMENT 0 Y12-9j09.p1k chr13 62 744 1667 1666 F 683 0.00 1425 reject_low 150 ALIGNMENT 120 Y12-9j09.p1k chr16 568 881 1594 1907 F 314 81.21 1425 reject_low 166 ALIGNMENT 53 Y12-9j09.p1k chr10 936 1041 1680 1785 F 106 83.96 1425 reject_low 277 ALIGNMENT 64 Y12-9j09.p1k chr13 564 737 1918 2091 F 174 81.03 1425 reject_low 270 ALIGNMENT 0 Y12-9j09.p1k chr12 899 62 1076679 1076678 C 838 0.00 1425 reject_low 296 ALIGNMENT 43 Y12-9j09.p1k chr05 643 576 574915 574982 C 68 89.71 1425 reject_low 328 ALIGNMENT 0 Y12-9j09.p1k chr12 909 908 2207 7345 F 0 0.00 1425 reject_low 376 ALIGNMENT 0 Y12-9j09.p1k chr14 62 744 1574 1573 F 683 0.00 1425 reject_low 151 ALIGNMENT 76 Y12-9j09.p1k chr08 565 774 1723 1932 F 210 80.95 1425 reject_low 244 ALIGNMENT 119 Y12-9j09.p1k chr06 781 1023 893 1135 F 243 83.95 1425 reject_low 156 ALIGNMENT 0 Y12-9j09.p1k chr12 62 563 2042 2041 F 502 0.00 1425 reject_low 387 ALIGNMENT 0 Y12-9j09.p1k chr05 672 62 575318 575317 C 611 0.00 1425 reject_low 45 ALIGNMENT 0 Y12-9j09.p1k chr09 62 575 1949 1948 F 514 0.00 1425 reject_low 394 ALIGNMENT 307 Y12-9j09.p1k chr05 1202 637 574737 575317 C 566 85.87 1425 reject_low 22 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 2079 2078 F 503 0.00 1425 reject_low 370,380 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1076402 1076401 C 503 0.00 1425 reject_low 371,381 ALIGNMENT 0 Y12-9j09.p1k chr10 811 908 2310 2309 F 98 0.00 1425 reject_low 257 ALIGNMENT 93 Y12-9j09.p1k chr08 773 576 560417 560614 C 198 84.34 1425 reject_low 220 ALIGNMENT 112 Y12-9j09.p1k chr02 564 827 1845 2108 F 264 82.95 1425 reject_low 175 ALIGNMENT 265 Y12-9j09.p1k chr08 953 565 560417 560805 C 389 91.00 1425 reject_low 41 ALIGNMENT 0 Y12-9j09.p1k chr16 564 62 946207 946206 C 503 0.00 1425 reject_low 188 ALIGNMENT 48 Y12-9j09.p1k chr15 1021 936 1089557 1089642 C 86 86.05 1425 reject_low 317 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1069991 1069990 C 503 0.00 1425 reject_low 70 ALIGNMENT 0 Y12-9j09.p1k chr02 62 960 1486 1485 F 899 0.00 1425 reject_low 338 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1830 1829 F 503 0.00 1425 reject_low 265 ALIGNMENT 0 Y12-9j09.p1k chr06 62 923 892 891 F 862 0.00 1425 reject_low 243 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1614 1613 F 503 0.00 1425 reject_low 85 ALIGNMENT 234 Y12-9j09.p1k chr10 565 1047 1741 2223 F 483 84.27 1425 reject_low 51 ALIGNMENT 746 Y12-9j09.q1k chr12 941 45 9546 10476 C 897 95.21 1393 reject_low 15 ALIGNMENT 48 Y12-9j09.p1k chr04 1021 936 1530392 1530477 C 86 86.05 1425 reject_low 310 ALIGNMENT 0 Y12-9j09.p1k chr12 567 62 1076543 1076542 C 506 0.00 1425 reject_low 385 ALIGNMENT 0 Y12-9j09.p1k chr06 62 887 892 891 F 826 0.00 1425 reject_low 218 ALIGNMENT 0 Y12-9j09.p1k chr02 62 575 1677 1676 F 514 0.00 1425 reject_low 98 ALIGNMENT 0 Y12-9j09.p1k chr13 62 564 1739 1738 F 503 0.00 1425 reject_low 102 ALIGNMENT 0 Y12-9j09.p1k chr12 567 62 1069916 1069915 C 506 0.00 1425 reject_low 171 ALIGNMENT 48 Y12-9j09.p1k chr08 936 1024 1662 1750 F 89 85.39 1425 reject_low 308 ALIGNMENT 307 Y12-9j09.p1k chr14 637 1202 1574 2154 F 566 85.87 1425 reject_low 24 ALIGNMENT 0 Y12-9j09.p1k chr05 718 908 2054 2053 F 191 0.00 1425 reject_low 366 ALIGNMENT 64 Y12-9j09.p1k chr12 564 737 2042 2215 F 174 81.03 1425 reject_low 387 ALIGNMENT 101 Y12-9j09.p1k chr14 568 820 1721 1973 F 253 82.21 1425 reject_low 205 ALIGNMENT 244 Y12-9j09.p1k chr02 565 1041 1630 2106 F 477 85.12 1425 reject_low 44 ALIGNMENT 102 Y12-9j09.p1k chr13 565 809 1847 2091 F 245 82.86 1425 reject_low 185 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 1705 1704 F 503 0.00 1425 reject_low 37 ALIGNMENT 82 Y12-9j09.p1k chr09 812 1024 1681 1893 F 213 80.28 1425 reject_low 233 ALIGNMENT 0 Y12-9j09.p1k chr04 908 774 1530065 1530064 C 135 0.00 1425 reject_low 235 ALIGNMENT 0 Y12-9j09.p1k chr07 908 882 1088971 1088970 C 27 0.00 1425 reject_low 162 ALIGNMENT 48 Y12-9j09.p1k chr13 936 1021 1678 1763 F 86 86.05 1425 reject_low 315 ALIGNMENT 0 Y12-9j09.p1k chr08 935 62 560831 560830 C 874 0.00 1425 reject_low 313 ALIGNMENT 102 Y12-9j09.p1k chr16 565 809 1663 1907 F 245 82.86 1425 reject_low 187 ALIGNMENT 33 Y12-9j09.p1k chr07 629 564 1088970 1089035 C 66 84.85 1425 reject_low 351 ALIGNMENT 0 Y12-9j09.q1k chr10 599 62 5709 5708 C 538 0.00 1393 reject_low 19 ALIGNMENT 0 Y12-9j09.p1k chr15 908 774 1089230 1089229 C 135 0.00 1425 reject_low 237 ALIGNMENT 102 Y12-9j09.p1k chr12 565 809 7506 7750 F 245 82.86 1425 reject_low 184 ALIGNMENT 130 Y12-9j09.p1k chr07 1045 781 1089130 1089394 C 265 83.77 1425 reject_low 132 ALIGNMENT 68 Y12-9j09.p1k chr16 1024 900 946359 946483 C 125 85.60 1425 reject_low 255 ALIGNMENT 82 Y12-9j09.p1k chr02 864 1035 1497 1668 F 172 83.14 1425 reject_low 221 ALIGNMENT 130 Y12-9j09.p1k chr12 1045 781 1076425 1076689 C 265 83.77 1425 reject_low 133 ALIGNMENT 0 Y12-9j09.p1k chr10 62 575 2004 2003 F 514 0.00 1425 reject_low 176 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 1849 1848 F 503 0.00 1425 reject_low 68 ALIGNMENT 0 Y12-9j09.p1k chr16 62 672 1483 1482 F 611 0.00 1425 reject_low 49 ALIGNMENT 0 Y12-9j09.p1k chr07 672 62 1089395 1089394 C 611 0.00 1425 reject_low 46 ALIGNMENT 301 Y12-9j09.p1k chr04 1202 637 1529908 1530488 C 566 85.51 1425 reject_low 26 ALIGNMENT 0 Y12-9j09.p1k chr05 567 62 575207 575206 C 506 0.00 1425 reject_low 161 ALIGNMENT 0 Y12-9j09.p1k chr05 62 744 1470 1469 F 683 0.00 1425 reject_low 141 ALIGNMENT 928 Y12-9j09.q1k chr04 45 1260 1526171 1527424 F 1216 92.76 1393 reject_low 3 ALIGNMENT 33 Y12-9j09.p1k chr14 564 629 1933 1998 F 66 84.85 1425 reject_low 355 ALIGNMENT 779 Y12-9j09.p1k chr12 989 20 1069602 1070571 C 970 93.92 1425 ambiguous_tel 0 ALIGNMENT 70 Y12-9j09.p1k chr14 864 1021 1585 1742 F 158 82.28 1425 reject_low 251 ALIGNMENT 48 Y12-9j09.p1k chr07 1021 936 1089298 1089383 C 86 86.05 1425 reject_low 312 ALIGNMENT 0 Y12-9j09.p1k chr16 908 821 945988 945987 C 88 0.00 1425 reject_low 207 ALIGNMENT 0 Y12-9j09.p1k chr12 708 680 1070027 1076286 C 29 0.00 1425 reject_low 381 ALIGNMENT 80 Y12-9j09.p1k chr06 888 1045 892 1049 F 158 84.18 1425 reject_low 218 ALIGNMENT 0 Y12-9j09.p1k chr12 62 899 1694 1693 F 838 0.00 1425 reject_low 254 ALIGNMENT 0 Y12-9j09.p1k chr12 575 62 1076463 1076462 C 514 0.00 1425 reject_low 378 ALIGNMENT 0 Y12-9j09.p1k chr12 62 563 7685 7684 F 502 0.00 1425 reject_low 352 ALIGNMENT 0 Y12-9j09.p1k chr12 780 62 1076690 1076689 C 719 0.00 1425 reject_low 133 ALIGNMENT 0 Y12-9j09.p1k chr12 863 62 1076679 1076678 C 802 0.00 1425 reject_low 249 ALIGNMENT 0 Y12-9j09.p1k chr13 62 564 1955 1954 F 503 0.00 1425 reject_low 286 ALIGNMENT 33 Y12-9j09.p1k chr12 629 564 1076265 1076330 C 66 84.85 1425 reject_low 391 ALIGNMENT 58 Y12-9j09.p1k chr09 565 679 2118 2232 F 115 86.09 1425 reject_low 396 ALIGNMENT 0 Y12-9j09.p1k chr12 744 738 1070027 1076264 C 7 0.00 1425 reject_low 388 ALIGNMENT 0 Y12-9j09.p1k chr16 564 62 946459 946458 C 503 0.00 1425 reject_low 32 ALIGNMENT 0 Y12-9j09.p1k chr05 908 680 574916 574915 C 229 0.00 1425 reject_low 283 ALIGNMENT 0 Y12-9j09.p1k chr08 908 680 560440 560439 C 229 0.00 1425 reject_low 319 ALIGNMENT 0 Y12-9j09.p1k chr12 62 575 2126 2125 F 514 0.00 1425 reject_low 368 ALIGNMENT 120 Y12-9j09.p1k chr14 745 1041 1574 1870 F 297 81.14 1425 reject_low 151 ALIGNMENT 0 Y12-9j09.p1k chr10 62 863 1680 1679 F 802 0.00 1425 reject_low 259 ALIGNMENT 0 Y12-9j09.p1k chr13 774 908 2091 2090 F 135 0.00 1425 reject_low 228 ALIGNMENT 64 Y12-9j09.p1k chr16 737 564 945962 946135 C 174 81.03 1425 reject_low 273 ALIGNMENT 0 Y12-9j09.p1k chr06 62 563 1072 1071 F 502 0.00 1425 reject_low 362 ALIGNMENT 120 Y12-9j09.p1k chr14 568 881 1685 1998 F 314 81.21 1425 reject_low 165 ALIGNMENT 47 Y12-9j09.p1k chr06 576 789 1048 1261 F 214 76.17 1425 reject_low 326 ALIGNMENT 225 Y12-9j09.p1k chr10 565 1047 1777 2259 F 483 83.64 1425 reject_low 56 ALIGNMENT 0 Y12-9j09.p1k chr02 62 564 1738 1737 F 503 0.00 1425 reject_low 126 ALIGNMENT 0 Y12-9j09.p1k chr07 708 62 1089395 1089394 C 647 0.00 1425 reject_low 111 ALIGNMENT 666 Y12-9j09.p1k chr08 20 820 1106 1906 F 801 94.88 1425 reject_low 13 ALIGNMENT 0 Y12-9j09.p1k chr12 908 909 1070007 1076273 C 0 0.00 1425 reject_low 379 ALIGNMENT 0 Y12-9j09.p1k chr15 567 62 1089543 1089542 C 506 0.00 1425 reject_low 172 ALIGNMENT 90 Y12-9j09.p1k chr07 773 576 1088970 1089167 C 198 83.84 1425 reject_low 226 ALIGNMENT 0 Y12-9j09.p1k chr12 62 563 7577 7576 F 502 0.00 1425 reject_low 269 ALIGNMENT 31 Y12-9j09.p1k chr08 629 576 560417 560470 C 54 87.04 1425 reject_low 365 ALIGNMENT 109 Y12-9j09.p1k chr10 781 1045 1669 1933 F 265 81.13 1425 reject_low 160 ALIGNMENT 33 Y12-9j09.p1k chr13 564 629 2026 2091 F 66 84.85 1425 reject_low 354 ALIGNMENT 0 Y12-9j09.p1k chr07 564 62 1089359 1089358 C 503 0.00 1425 reject_low 62 ALIGNMENT 238 Y12-9j09.p1k chr04 953 565 1530064 1530452 C 389 88.69 1425 reject_low 69 ALIGNMENT 0 Y12-9j09.p1k chr05 62 811 1465 1464 F 750 0.00 1425 reject_low 198 ALIGNMENT 91 Y12-9j09.p1k chr08 1045 812 560613 560846 C 234 80.34 1425 reject_low 192 ALIGNMENT 48 Y12-9j09.p1k chr12 936 1021 7337 7422 F 86 86.05 1425|9,0 reject_low 373 ALIGNMENT 0 Y12-9j09.p1k chr14 62 567 1685 1684 F 506 0.00 1425 reject_low 165 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1069739 1069738 C 503 0.00 1425 reject_low 304 ALIGNMENT 0 Y12-9j09.p1k chr08 62 575 1842 1841 F 514 0.00 1425 reject_low 348 ALIGNMENT 0 Y12-9j09.p1k chr15 908 738 1089230 1089229 C 171 0.00 1425 reject_low 280 ALIGNMENT 0 Y12-9j09.p1k chr16 62 567 1594 1593 F 506 0.00 1425 reject_low 166 ALIGNMENT 90 Y12-9j09.p1k chr13 576 773 1894 2091 F 198 83.84 1425 reject_low 228 ALIGNMENT 101 Y12-9j09.p1k chr12 568 820 7473 7725 F 253 82.21 1425 reject_low 203 ALIGNMENT 226 Y12-9j09.p1k chr16 953 565 945962 946350 C 389 87.66 1425 reject_low 77 ALIGNMENT 0 Y12-9j09.p1k chr10 62 935 1680 1679 F 874 0.00 1425 reject_low 277 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1650 1649 F 503 0.00 1425 reject_low 128 ALIGNMENT 173 Y12-9j09.p1k chr07 917 565 1088970 1089322 C 353 84.70 1425 reject_low 100 ALIGNMENT 91 Y12-9j09.p1k chr12 1045 812 1076461 1076694 C 234 80.34 1425 reject_low 193 ALIGNMENT 170 Y12-9j09.p1k chr12 917 565 1076265 1076617 C 353 84.42 1425|9,0 reject_low 379 ALIGNMENT 228 Y12-9j09.p1k chr12 673 1045 1683 2055 F 373 88.20 1425 reject_low 67 ALIGNMENT 191 Y12-9j09.p1k chr12 709 1045 1683 2019 F 337 86.65 1425 reject_low 88 ALIGNMENT 782 Y12-9j09.p1k chr05 989 20 574893 575862 C 970 94.02 1425 reject_low 9 ALIGNMENT 110 Y12-9j09.p1k chr06 745 1023 893 1171 F 279 81.00 1425 reject_low 178 ALIGNMENT 0 Y12-9j09.p1k chr08 62 636 1651 1650 F 575 0.00 1425 reject_low 157 ALIGNMENT 842 Y12-9j09.p1k chr05 20 1047 925 1952 F 1028 94.46 1425 ambiguous_tel 1 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 1758 1757 F 503 0.00 1425 reject_low 50 ALIGNMENT 0 Y12-9j09.p1k chr14 810 908 1998 1997 F 99 0.00 1425 reject_low 186 ALIGNMENT 746 Y12-9j09.q1k chr08 941 45 3743 4673 C 897 95.21 1393 reject_low 13 ALIGNMENT 0 Y12-9j09.p1k chr07 908 738 1088971 1088970 C 171 0.00 1425 reject_low 268 ALIGNMENT 0 Y12-9j09.p1k chr02 792 908 2108 2107 F 117 0.00 1425 reject_low 179 ALIGNMENT 0 Y12-9j09.p1k chr15 708 62 1089654 1089653 C 647 0.00 1425 reject_low 121 ALIGNMENT 61 Y12-9j09.p1k chr04 737 564 1530064 1530237 C 174 80.46 1425 reject_low 278 ALIGNMENT 99 Y12-9j09.p1k chr15 809 565 1089229 1089473 C 245 82.45 1425 reject_low 210 ALIGNMENT 969 Y12-9j09.q1k chr09 1260 37 5027 6288 C 1224 93.63 1393 ambiguous_tel 2 ALIGNMENT 0 Y12-9j09.p1k chr02 887 908 2095 2094 F 22 0.00 1425 reject_low 115 ALIGNMENT 101 Y12-9j09.p1k chr05 820 568 574918 575170 C 253 82.21 1425 reject_low 201 ALIGNMENT 290 Y12-9j09.p1k chr10 565 1045 1705 2185 F 481 88.15 1425 reject_low 37 ALIGNMENT 0 Y12-9j09.p1k chr14 62 863 1585 1584 F 802 0.00 1425 reject_low 251 ALIGNMENT 0 Y12-9j09.p1k chr08 863 62 560831 560830 C 802 0.00 1425 reject_low 248 ALIGNMENT 301 Y12-9j09.p1k chr12 1202 637 1076109 1076689 C 566 85.51 1425 reject_low 27 ALIGNMENT 0 Y12-9j09.p1k chr08 575 62 560471 560470 C 514 0.00 1425 reject_low 365 ALIGNMENT 0 Y12-9j09.p1k chr16 882 908 1907 1906 F 27 0.00 1425 reject_low 166 ALIGNMENT 0 Y12-9j09.p1k chr16 62 899 1494 1493 F 838 0.00 1425 reject_low 300 ALIGNMENT 0 Y12-9j09.p1k chr04 908 630 1530065 1530064 C 279 0.00 1425 reject_low 349 ALIGNMENT 90 Y12-9j09.p1k chr12 576 773 7553 7750 F 198 83.84 1425 reject_low 227 ALIGNMENT 0 Y12-9j09.p1k chr14 680 908 1976 1975 F 229 0.00 1425 reject_low 287 ALIGNMENT 0 Y12-9j09.p1k chr12 774 908 7750 7749 F 135 0.00 1425 reject_low 227 ALIGNMENT 0 Y12-9j09.p1k chr14 62 564 1754 1753 F 503 0.00 1425 reject_low 186 ALIGNMENT 0 Y12-9j09.p1k chr12 908 680 1069625 1069624 C 229 0.00 1425 reject_low 304 ALIGNMENT 38 Y12-9j09.p1k chr04 1024 961 1530425 1530488 C 64 87.50 1425 reject_low 339 ALIGNMENT 324 Y12-9j09.p1k chr10 601 1041 1669 2109 F 441 92.52 1425 reject_low 19 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 2029 2028 F 503 0.00 1425 reject_low 180 ALIGNMENT 43 Y12-9j09.p1k chr16 576 643 1818 1885 F 68 89.71 1425 reject_low 335 ALIGNMENT 82 Y12-9j09.p1k chr10 812 1024 1664 1876 F 213 80.28 1425 reject_low 234 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1542 1541 F 503 0.00 1425 reject_low 38 ALIGNMENT 0 Y12-9j09.p1k chr12 62 636 1683 1682 F 575 0.00 1425 reject_low 86 ALIGNMENT 288 Y12-9j09.p1k chr05 565 1023 1506 1964 F 459 89.11 1425 reject_low 39 ALIGNMENT 0 Y12-9j09.p1k chr02 648 908 2108 2107 F 261 0.00 1425 reject_low 306 ALIGNMENT 0 Y12-9j09.p1k chr06 62 672 893 892 F 611 0.00 1425 reject_low 33 ALIGNMENT 0 Y12-9j09.p1k chr07 567 62 1089248 1089247 C 506 0.00 1425 reject_low 202 ALIGNMENT 43 Y12-9j09.p1k chr15 643 576 1089251 1089318 C 68 89.71 1425 reject_low 334 ALIGNMENT 0 Y12-9j09.p1k chr04 564 62 1530201 1530200 C 503 0.00 1425 reject_low 303 ALIGNMENT 0 Y12-9j09.p1k chr02 62 575 2073 2072 F 514 0.00 1425 reject_low 367 ALIGNMENT 0 Y12-9j09.p1k chr14 62 899 1585 1584 F 838 0.00 1425 reject_low 298 ALIGNMENT 0 Y12-9j09.p1k chr05 567 62 575171 575170 C 506 0.00 1425 reject_low 201 ALIGNMENT 100 Y12-9j09.p1k chr09 565 807 2046 2288 F 243 82.72 1425 reject_low 200 ALIGNMENT 0 Y12-9j09.p1k chr06 62 828 905 904 F 767 0.00 1425 reject_low 116 ALIGNMENT 928 Y12-9j09.q1k chr12 45 1260 1072372 1073625 F 1216 92.76 1393 reject_low 4 ALIGNMENT 0 Y12-9j09.p1k chr10 968 974 2216 2234 F 7 0.00 1425 reject_low 374 ALIGNMENT 0 Y12-9j09.p1k chr05 575 62 574983 574982 C 514 0.00 1425 reject_low 328 ALIGNMENT 0 Y12-9j09.p1k chr08 564 62 560590 560589 C 503 0.00 1425 reject_low 274 ALIGNMENT 0 Y12-9j09.p1k chr16 780 62 946495 946494 C 719 0.00 1425 reject_low 232 ALIGNMENT 170 Y12-9j09.p1k chr08 1045 709 560505 560841 C 337 84.57 1425 reject_low 96 ALIGNMENT 0 Y12-9j09.p1k chr13 62 567 1814 1813 F 506 0.00 1425 reject_low 204 ALIGNMENT 42 Y12-9j09.p1k chr05 961 1021 1470 1530 F 61 90.16 1425 reject_low 321 ALIGNMENT 90 Y12-9j09.p1k chr16 773 576 945962 946159 C 198 83.84 1425 reject_low 231 ALIGNMENT 0 Y12-9j09.p1k chr05 62 863 1481 1480 F 802 0.00 1425 reject_low 275 ALIGNMENT 115 Y12-9j09.p1k chr10 576 892 2004 2320 F 317 80.44 1425 reject_low 176 ALIGNMENT 243 Y12-9j09.p1k chr14 673 1045 1574 1946 F 373 89.54 1425 reject_low 48 ALIGNMENT 0 Y12-9j09.p1k chr08 908 821 560443 560442 C 88 0.00 1425 reject_low 177 ALIGNMENT 0 Y12-9j09.p1k chr12 62 780 1683 1682 F 719 0.00 1425 reject_low 239 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 7398 7397 F 503 0.00 1425 reject_low 101 ALIGNMENT 779 Y12-9j09.p1k chr15 989 20 1089229 1090198 C 970 93.92 1425 reject_low 5 ALIGNMENT 0 Y12-9j09.p1k chr09 62 575 2165 2164 F 514 0.00 1425 reject_low 397 ALIGNMENT 924 Y12-9j09.q1k chr16 1260 37 4547 5808 C 1224 92.40 1393 reject_low 7 ALIGNMENT 0 Y12-9j09.p1k chr06 866 908 1265 1264 F 43 0.00 1425 reject_low 266 ALIGNMENT 101 Y12-9j09.p1k chr07 820 568 1088995 1089247 C 253 82.21 1425 reject_low 202 ALIGNMENT 290 Y12-9j09.p1k chr09 565 1045 1722 2202 F 481 88.15 1425 reject_low 36 ALIGNMENT 0 Y12-9j09.p1k chr12 575 62 1076355 1076354 C 514 0.00 1425 reject_low 369 ALIGNMENT 0 Y12-9j09.p1k chr05 62 575 1805 1804 F 514 0.00 1425 reject_low 264 ALIGNMENT 197 Y12-9j09.p1k chr08 917 565 560417 560769 C 353 86.97 1425 reject_low 90 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 1719 1718 F 503 0.00 1425 reject_low 21 ALIGNMENT 0 Y12-9j09.p1k chr16 908 774 945963 945962 C 135 0.00 1425 reject_low 231 ALIGNMENT 0 Y12-9j09.p1k chr16 62 564 1555 1554 F 503 0.00 1425 reject_low 104 ALIGNMENT 0 Y12-9j09.p1k chr09 62 811 1681 1680 F 750 0.00 1425 reject_low 233 ALIGNMENT 130 Y12-9j09.p1k chr05 1045 781 575053 575317 C 265 83.77 1425 reject_low 131 ALIGNMENT 114 Y12-9j09.p1k chr16 1041 812 946270 946499 C 230 83.91 1425 reject_low 154 ALIGNMENT 0 Y12-9j09.p1k chr16 810 908 1907 1906 F 99 0.00 1425 reject_low 187 ALIGNMENT 120 Y12-9j09.p1k chr12 745 1041 7326 7622 F 297 81.14 1425 reject_low 387 ALIGNMENT 0 Y12-9j09.p1k chr10 62 563 2172 2171 F 502 0.00 1425 reject_low 392 ALIGNMENT 0 Y12-9j09.p1k chr05 908 774 574894 574893 C 135 0.00 1425 reject_low 225 ALIGNMENT 874 Y12-9j09.p1k chr16 1045 20 946014 947039 C 1026 95.52 1425 reject_low 10 ALIGNMENT 0 Y12-9j09.p1k chr15 908 644 1089252 1089251 C 265 0.00 1425 reject_low 334 ALIGNMENT 84 Y12-9j09.p1k chr16 1021 781 946254 946494 C 241 79.25 1425 reject_low 232 ALIGNMENT 865 Y12-9j09.p1k chr12 20 1045 1138 2163 F 1026 95.22 1425 reject_low 12 ALIGNMENT 0 Y12-9j09.p1k chr12 774 780 2216 7325 F 7 0.00 1425 reject_low 377 ALIGNMENT 120 Y12-9j09.p1k chr05 881 568 574893 575206 C 314 81.21 1425 reject_low 161 ALIGNMENT 30 Y12-9j09.p1k chr09 961 1021 1686 1746 F 61 83.61 1425 reject_low 363 ALIGNMENT 0 Y12-9j09.p1k chr08 564 62 560662 560661 C 503 0.00 1425 reject_low 174 ALIGNMENT 53 Y12-9j09.p1k chr07 1021 900 1089262 1089383 C 122 81.97 1425 reject_low 294 ALIGNMENT 0 Y12-9j09.p1k chr04 567 62 1530342 1530341 C 506 0.00 1425 reject_low 213 ALIGNMENT 0 Y12-9j09.p1k chr12 872 873 1070007 1076273 C 0 0.00 1425 reject_low 389 ALIGNMENT 0 Y12-9j09.p1k chr08 908 774 560418 560417 C 135 0.00 1425 reject_low 220 ALIGNMENT 48 Y12-9j09.p1k chr16 936 1021 1494 1579 F 86 86.05 1425 reject_low 318 ALIGNMENT 0 Y12-9j09.p1k chr12 780 774 1070027 1076264 C 7 0.00 1425 reject_low 378 ALIGNMENT 0 Y12-9j09.p1k chr16 62 564 1663 1662 F 503 0.00 1425 reject_low 187 ALIGNMENT 0 Y12-9j09.p1k chr14 62 564 1862 1861 F 503 0.00 1425 reject_low 287 ALIGNMENT 177 Y12-9j09.p1k chr02 637 1045 1486 1894 F 409 82.40 1425 reject_low 93 ALIGNMENT 0 Y12-9j09.p1k chr04 563 62 1530130 1530129 C 502 0.00 1425 reject_low 349 ALIGNMENT 228 Y12-9j09.p1k chr10 565 1040 1849 2324 F 476 84.03 1425 reject_low 68 ALIGNMENT 345 Y12-9j09.p1k chr02 565 1047 1522 2004 F 483 91.93 1425 reject_low 34 ALIGNMENT 101 Y12-9j09.p1k chr16 820 568 945987 946239 C 253 82.21 1425 reject_low 207 ALIGNMENT 0 Y12-9j09.p1k chr08 62 575 1806 1805 F 514 0.00 1425 reject_low 337 ALIGNMENT 125 Y12-9j09.p1k chr16 881 565 945962 946278 C 317 81.70 1425 reject_low 155 ALIGNMENT 53 Y12-9j09.p1k chr05 1021 900 575185 575306 C 122 81.97 1425 reject_low 293 ALIGNMENT 140 Y12-9j09.p1k chr06 829 1047 905 1123 F 219 88.58 1425 reject_low 116 ALIGNMENT 0 Y12-9j09.p1k chr16 708 62 946495 946494 C 647 0.00 1425 reject_low 87 ALIGNMENT 97 Y12-9j09.p1k chr08 1024 745 560562 560841 C 280 79.29 1425 reject_low 211 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 2101 2100 F 503 0.00 1425 reject_low 307 ALIGNMENT 0 Y12-9j09.p1k chr12 62 567 7473 7472 F 506 0.00 1425 reject_low 203 ALIGNMENT 924 Y12-9j09.q1k chr14 1260 37 4638 5899 C 1224 92.40 1393 reject_low 8 ALIGNMENT 0 Y12-9j09.p1k chr12 816 817 1070027 1076293 C 0 0.00 1425 reject_low 385 ALIGNMENT 70 Y12-9j09.p1k chr04 1021 864 1530320 1530477 C 158 82.28 1425 reject_low 245 ALIGNMENT 223 Y12-9j09.p1k chr12 565 953 1827 2215 F 389 87.40 1425|0,9 reject_low 373 ALIGNMENT 38 Y12-9j09.p1k chr02 961 1024 1486 1549 F 64 87.50 1425 reject_low 338 ALIGNMENT 173 Y12-9j09.p1k chr14 565 917 1646 1998 F 353 84.70 1425 reject_low 103 ALIGNMENT 219 Y12-9j09.p1k chr12 565 989 1791 2215 F 425 85.41 1425 reject_low 80 ALIGNMENT 0 Y12-9j09.p1k chr14 62 564 1610 1609 F 503 0.00 1425 reject_low 65 ALIGNMENT 147 Y12-9j09.p1k chr09 745 1041 1686 1982 F 297 84.18 1425 reject_low 123 ALIGNMENT 0 Y12-9j09.p1k chr04 744 62 1530489 1530488 C 683 0.00 1425 reject_low 146 ALIGNMENT 101 Y12-9j09.p1k chr16 568 820 1630 1882 F 253 82.21 1425 reject_low 206 ALIGNMENT 0 Y12-9j09.p1k chr09 62 636 1686 1685 F 575 0.00 1425 reject_low 42 ALIGNMENT 68 Y12-9j09.p1k chr05 565 789 1830 2054 F 225 79.11 1425 reject_low 265 ALIGNMENT 0 Y12-9j09.p1k chr02 62 563 1845 1844 F 502 0.00 1425 reject_low 175 ALIGNMENT 0 Y12-9j09.p1k chr06 62 780 893 892 F 719 0.00 1425 reject_low 156 ALIGNMENT 120 Y12-9j09.p1k chr05 1041 745 575021 575317 C 297 81.14 1425 reject_low 147 ALIGNMENT 64 Y12-9j09.p1k chr12 564 737 7577 7750 F 174 81.03 1425 reject_low 269 ALIGNMENT 295 Y12-9j09.p1k chr12 1178 637 1069471 1070026 C 542 85.79 1425|0,4 reject_low 369 ALIGNMENT 0 Y12-9j09.p1k chr05 908 644 574916 574915 C 265 0.00 1425 reject_low 328 ALIGNMENT 0 Y12-9j09.p1k chr08 851 908 1900 1899 F 58 0.00 1425 reject_low 219 ALIGNMENT 0 Y12-9j09.p1k chr08 62 863 1662 1661 F 802 0.00 1425 reject_low 143 ALIGNMENT 236 Y12-9j09.p1k chr09 565 967 1830 2232 F 403 87.84 1425 reject_low 72 ALIGNMENT 136 Y12-9j09.p1k chr02 745 1024 1486 1765 F 280 83.93 1425 reject_low 140 ALIGNMENT 64 Y12-9j09.p1k chr06 924 1041 892 1009 F 118 85.59 1425 reject_low 243 ALIGNMENT 98 Y12-9j09.p1k chr15 820 568 1089254 1089506 C 253 81.82 1425 reject_low 215 ALIGNMENT 0 Y12-9j09.p1k chr14 62 672 1574 1573 F 611 0.00 1425 reject_low 48 ALIGNMENT 0 Y12-9j09.p1k chr16 575 62 946160 946159 C 514 0.00 1425 reject_low 231 ALIGNMENT 0 Y12-9j09.p1k chr05 62 708 1470 1469 F 647 0.00 1425 reject_low 105 ALIGNMENT 0 Y12-9j09.p1k chr13 62 960 1667 1666 F 899 0.00 1425 reject_low 344 ALIGNMENT 301 Y12-9j09.p1k chr07 1178 637 1088839 1089394 C 542 86.16 1425 reject_low 31 ALIGNMENT 0 Y12-9j09.p1k chr12 811 62 1076695 1076694 C 750 0.00 1425 reject_low 193 ALIGNMENT 130 Y12-9j09.p1k chr14 781 1045 1574 1838 F 265 83.77 1425 reject_low 135 ALIGNMENT 0 Y12-9j09.p1k chr05 935 62 575307 575306 C 874 0.00 1425 reject_low 311 ALIGNMENT 0 Y12-9j09.p1k chr07 908 821 1088996 1088995 C 88 0.00 1425 reject_low 202 ALIGNMENT 175 Y12-9j09.p1k chr02 576 994 1677 2095 F 419 82.10 1425 reject_low 98 ALIGNMENT 0 Y12-9j09.p1k chr02 62 811 1481 1480 F 750 0.00 1425 reject_low 168 ALIGNMENT 216 Y12-9j09.p1k chr02 601 1047 1486 1932 F 447 84.12 1425 reject_low 75 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 2118 2117 F 503 0.00 1425 reject_low 396 ALIGNMENT 0 Y12-9j09.p1k chr09 62 600 1686 1685 F 539 0.00 1425 reject_low 35 ALIGNMENT 130 Y12-9j09.p1k chr16 781 1045 1483 1747 F 265 83.77 1425 reject_low 137 ALIGNMENT 0 Y12-9j09.p1k chr12 873 872 2207 7345 F 0 0.00 1425 reject_low 386 ALIGNMENT 0 Y12-9j09.p1k chr07 567 62 1089284 1089283 C 506 0.00 1425 reject_low 162 ALIGNMENT 0 Y12-9j09.p1k chr16 960 62 946495 946494 C 899 0.00 1425 reject_low 323 ALIGNMENT 0 Y12-9j09.p1k chr15 908 821 1089255 1089254 C 88 0.00 1425 reject_low 215 ALIGNMENT 242 Y12-9j09.p1k chr10 673 1021 1669 2017 F 349 91.12 1425 reject_low 60 ALIGNMENT 55 Y12-9j09.p1k chr16 565 679 1771 1885 F 115 85.22 1425 reject_low 288 ALIGNMENT 0 Y12-9j09.p1k chr16 564 62 946099 946098 C 503 0.00 1425 reject_low 289 ALIGNMENT 0 Y12-9j09.p1k chr14 882 908 1998 1997 F 27 0.00 1425 reject_low 165 ALIGNMENT 43 Y12-9j09.p1k chr07 643 576 1088992 1089059 C 68 89.71 1425 reject_low 329 ALIGNMENT 0 Y12-9j09.p1k chr02 62 559 1769 1768 F 498 0.00 1425 reject_low 115 ALIGNMENT 155 Y12-9j09.p1k chr12 1045 709 1069690 1070026 C 337 83.09 1425 reject_low 381 ALIGNMENT 0 Y12-9j09.p1k chr09 62 559 1897 1896 F 498 0.00 1425 reject_low 375 ALIGNMENT 43 Y12-9j09.p1k chr12 576 643 2126 2193 F 68 89.71 1425|0,3 reject_low 368 ALIGNMENT 53 Y12-9j09.p1k chr02 900 1021 1497 1618 F 122 81.97 1425 reject_low 291 ALIGNMENT 120 Y12-9j09.p1k chr07 1041 745 1089098 1089394 C 297 81.14 1425 reject_low 148 ALIGNMENT 0 Y12-9j09.p1k chr06 62 575 976 975 F 514 0.00 1425 reject_low 266 ALIGNMENT 53 Y12-9j09.p1k chr12 1021 900 1076557 1076678 C 122 81.97 1425 reject_low 296 ALIGNMENT 64 Y12-9j09.p1k chr07 737 564 1088970 1089143 C 174 81.03 1425 reject_low 268 ALIGNMENT 0 Y12-9j09.p1k chr04 564 62 1530417 1530416 C 503 0.00 1425 reject_low 106 ALIGNMENT 120 Y12-9j09.p1k chr13 745 1041 1667 1963 F 297 81.14 1425 reject_low 150 ALIGNMENT 0 Y12-9j09.p1k chr02 62 563 1881 1880 F 502 0.00 1425 reject_low 179 ALIGNMENT 209 Y12-9j09.p1k chr05 565 1009 1614 2058 F 445 83.82 1425 reject_low 85 ALIGNMENT 0 Y12-9j09.p1k chr14 62 564 1646 1645 F 503 0.00 1425 reject_low 103 ALIGNMENT 0 Y12-9j09.p1k chr12 677 676 2191 7329 F 0 0.00 1425 reject_low 370 ALIGNMENT 167 Y12-9j09.p1k chr08 673 959 1651 1937 F 287 87.46 1425 reject_low 122 ALIGNMENT 0 Y12-9j09.p1k chr16 564 62 946279 946278 C 503 0.00 1425 reject_low 155 ALIGNMENT 91 Y12-9j09.p1k chr13 812 1045 1662 1895 F 234 80.34 1425 reject_low 194 ALIGNMENT 0 Y12-9j09.p1k chr07 563 62 1089036 1089035 C 502 0.00 1425 reject_low 351 ALIGNMENT 746 Y12-9j09.q1k chr12 941 45 4011 4941 C 897 95.21 1393 reject_low 12 ALIGNMENT 99 Y12-9j09.p1k chr04 809 565 1530064 1530308 C 245 82.45 1425 reject_low 208 ALIGNMENT 30 Y12-9j09.p1k chr10 961 1021 1669 1729 F 61 83.61 1425 reject_low 364 ALIGNMENT 0 Y12-9j09.p1k chr12 744 62 1076690 1076689 C 683 0.00 1425 reject_low 149 ALIGNMENT 33 Y12-9j09.p1k chr12 629 564 1069602 1069667 C 66 84.85 1425 reject_low 353 ALIGNMENT 87 Y12-9j09.p1k chr12 773 576 1069602 1069799 C 198 83.33 1425 reject_low 236 ALIGNMENT 0 Y12-9j09.p1k chr05 564 62 575282 575281 C 503 0.00 1425 reject_low 61 ALIGNMENT 0 Y12-9j09.p1k chr08 62 744 1651 1650 F 683 0.00 1425 reject_low 29 ALIGNMENT 98 Y12-9j09.p1k chr12 820 568 1076290 1076542 C 253 81.82 1425|4,0 reject_low 385 ALIGNMENT 161 Y12-9j09.p1k chr05 709 1045 1470 1806 F 337 83.68 1425 reject_low 105 ALIGNMENT 0 Y12-9j09.p1k chr15 564 62 1089474 1089473 C 503 0.00 1425 reject_low 210 ALIGNMENT 53 Y12-9j09.p1k chr08 1021 900 560709 560830 C 122 81.97 1425 reject_low 295 ALIGNMENT 234 Y12-9j09.p1k chr09 565 1047 1758 2240 F 483 84.27 1425 reject_low 50 ALIGNMENT 0 Y12-9j09.p1k chr16 62 863 1494 1493 F 802 0.00 1425 reject_low 253 ALIGNMENT 0 Y12-9j09.p1k chr16 567 62 946240 946239 C 506 0.00 1425 reject_low 207 ALIGNMENT 0 Y12-9j09.p1k chr04 636 62 1530489 1530488 C 575 0.00 1425 reject_low 26 ALIGNMENT 173 Y12-9j09.p1k chr12 565 917 7398 7750 F 353 84.70 1425 reject_low 101 ALIGNMENT 182 Y12-9j09.p1k chr12 576 917 1874 2215 F 342 85.96 1425|0,9 reject_low 376 ALIGNMENT 0 Y12-9j09.p1k chr09 680 859 2233 2244 F 180 0.00 1425 reject_low 396 ALIGNMENT 97 Y12-9j09.p1k chr05 565 865 1758 2058 F 301 79.40 1425 reject_low 217 ALIGNMENT 0 Y12-9j09.p1k chr04 899 62 1530478 1530477 C 838 0.00 1425 reject_low 292 ALIGNMENT 0 Y12-9j09.p1k chr04 960 62 1530489 1530488 C 899 0.00 1425 reject_low 339 ALIGNMENT 104 Y12-9j09.p1k chr02 564 791 1881 2108 F 228 84.21 1425 reject_low 179 ALIGNMENT 170 Y12-9j09.p1k chr15 917 565 1089229 1089581 C 353 84.42 1425 reject_low 108 ALIGNMENT 243 Y12-9j09.p1k chr05 1045 673 574945 575317 C 373 89.54 1425 reject_low 45 ALIGNMENT 102 Y12-9j09.p1k chr05 809 565 574893 575137 C 245 82.86 1425 reject_low 182 ALIGNMENT 0 Y12-9j09.p1k chr14 62 935 1585 1584 F 874 0.00 1425 reject_low 316 ALIGNMENT 43 Y12-9j09.p1k chr04 643 576 1530086 1530153 C 68 89.71 1425 reject_low 327 ALIGNMENT 90 Y12-9j09.p1k chr05 773 576 574893 575090 C 198 83.84 1425 reject_low 225 ALIGNMENT 0 Y12-9j09.p1k chr07 564 62 1089107 1089106 C 503 0.00 1425 reject_low 284 ALIGNMENT 0 Y12-9j09.p1k chr15 908 680 1089252 1089251 C 229 0.00 1425 reject_low 305 ALIGNMENT 158 Y12-9j09.p1k chr13 709 1045 1667 2003 F 337 83.38 1425 reject_low 112 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1758 1757 F 503 0.00 1425 reject_low 217 ALIGNMENT 155 Y12-9j09.p1k chr10 709 1045 1669 2005 F 337 83.09 1425 reject_low 119 ALIGNMENT 47 Y12-9j09.p1k chr12 936 1041 1694 1799 F 106 82.08 1425 reject_low 301 ALIGNMENT 0 Y12-9j09.p1k chr09 644 859 2233 2244 F 216 0.00 1425 reject_low 397 ALIGNMENT 120 Y12-9j09.p1k chr12 568 881 7437 7750 F 314 81.21 1425 reject_low 163 ALIGNMENT 0 Y12-9j09.p1k chr05 811 62 575323 575322 C 750 0.00 1425 reject_low 190 ALIGNMENT 0 Y12-9j09.p1k chr12 564 62 1076654 1076653 C 503 0.00 1425 reject_low 372 ALIGNMENT 55 Y12-9j09.p1k chr13 565 679 1955 2069 F 115 85.22 1425 reject_low 286 ALIGNMENT 0 Y12-9j09.p1k chr05 62 960 1470 1469 F 899 0.00 1425 reject_low 321 ALIGNMENT 0 Y12-9j09.p1k chr04 575 62 1530262 1530261 C 514 0.00 1425 reject_low 235 ALIGNMENT 863 Y12-9j09.q1k chr05 37 1260 571009 572253 F 1224 91.26 1393 reject_low 9 ALIGNMENT 366 Y12-9j09.p1k chr05 565 1202 1578 2218 F 638 86.68 1425 reject_low 20 ALIGNMENT 0 Y12-9j09.p1k chr08 811 62 560847 560846 C 750 0.00 1425 reject_low 192 ALIGNMENT 0 Y12-9j09.p1k chr15 960 62 1089654 1089653 C 899 0.00 1425 reject_low 346 ALIGNMENT 0 Y12-9j09.p1k chr15 575 62 1089319 1089318 C 514 0.00 1425 reject_low 334 ALIGNMENT 0 Y12-9j09.p1k chr07 908 630 1088971 1088970 C 279 0.00 1425 reject_low 351 ALIGNMENT 0 Y12-9j09.p1k chr04 863 62 1530478 1530477 C 802 0.00 1425 reject_low 245 ALIGNMENT 0 Y12-9j09.p1k chr08 575 62 560507 560506 C 514 0.00 1425 reject_low 359 ALIGNMENT 102 Y12-9j09.p1k chr05 781 1024 1470 1713 F 244 81.56 1425 reject_low 181 ALIGNMENT 0 Y12-9j09.p1k chr16 62 575 1710 1709 F 514 0.00 1425 reject_low 230 ALIGNMENT 145 Y12-9j09.p1k chr12 745 1021 1683 1959 F 277 85.20 1425 reject_low 129 ALIGNMENT 0 Y12-9j09.p1k chr14 62 563 1933 1932 F 502 0.00 1425 reject_low 355 ALIGNMENT 0 Y12-9j09.p1k chr16 62 563 1842 1841 F 502 0.00 1425 reject_low 357 ALIGNMENT 0 Y12-9j09.p1k chr12 908 630 1069603 1069602 C 279 0.00 1425 reject_low 353 ALIGNMENT 782 Y12-9j09.p1k chr16 20 989 938 1907 F 970 94.02 1425 reject_low 7 ALIGNMENT 53 Y12-9j09.p1k chr15 1021 900 1089521 1089642 C 122 81.97 1425 reject_low 299 ALIGNMENT 33 Y12-9j09.p1k chr05 629 564 574893 574958 C 66 84.85 1425 reject_low 350 ALIGNMENT 32 Y12-9j09.p1k chr08 564 619 1866 1921 F 56 87.50 1425 reject_low 360 ALIGNMENT 64 Y12-9j09.p1k chr06 565 810 1001 1246 F 246 77.64 1425 reject_low 281 ALIGNMENT 70 Y12-9j09.p1k chr06 576 865 976 1265 F 290 76.55 1425 reject_low 266 ALIGNMENT 0 Y12-9j09.p1k chr02 828 908 2108 2107 F 81 0.00 1425 reject_low 175 ALIGNMENT 0 Y12-9j09.p1k chr12 62 575 1874 1873 F 514 0.00 1425 reject_low 376 ALIGNMENT 0 Y12-9j09.p1k chr04 908 680 1530087 1530086 C 229 0.00 1425 reject_low 303 ALIGNMENT 0 Y12-9j09.p1k chr04 908 644 1530087 1530086 C 265 0.00 1425 reject_low 327 ALIGNMENT 33 Y12-9j09.p1k chr04 629 564 1530064 1530129 C 66 84.85 1425 reject_low 349 ALIGNMENT 0 Y12-9j09.p1k chr06 62 564 1001 1000 F 503 0.00 1425 reject_low 281 ALIGNMENT 91 Y12-9j09.p1k chr14 812 1045 1569 1802 F 234 80.34 1425 reject_low 195 ALIGNMENT 0 Y12-9j09.p1k chr12 62 863 1694 1693 F 802 0.00 1425 reject_low 223 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 1722 1721 F 503 0.00 1425 reject_low 36 ALIGNMENT 419 Y12-9j09.q1k chr10 1260 600 5010 5708 C 661 88.20 1393 reject_low 19 ALIGNMENT 121 Y12-9j09.p1k chr02 576 850 1821 2095 F 275 83.27 1425 reject_low 167 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 1741 1740 F 503 0.00 1425 reject_low 51 ALIGNMENT 0 Y12-9j09.p1k chr12 567 62 1076579 1076578 C 506 0.00 1425 reject_low 389 ALIGNMENT 0 Y12-9j09.p1k chr15 636 62 1089654 1089653 C 575 0.00 1425 reject_low 28 ALIGNMENT 0 Y12-9j09.p1k chr14 62 575 1909 1908 F 514 0.00 1425 reject_low 333 ALIGNMENT 158 Y12-9j09.p1k chr05 1045 709 574981 575317 C 337 83.38 1425 reject_low 110 ALIGNMENT 185 Y12-9j09.p1k chr05 673 1041 1470 1838 F 369 84.55 1425 reject_low 91 ALIGNMENT 231 Y12-9j09.p1k chr16 1045 673 946122 946494 C 373 88.47 1425 reject_low 58 ALIGNMENT 307 Y12-9j09.p1k chr16 637 1202 1483 2063 F 566 85.87 1425 reject_low 25 ALIGNMENT 0 Y12-9j09.p1k chr13 62 636 1667 1666 F 575 0.00 1425 reject_low 23 ALIGNMENT 155 Y12-9j09.p1k chr09 709 1045 1686 2022 F 337 83.09 1425 reject_low 118 ALIGNMENT 0 Y12-9j09.p1k chr09 62 575 2021 2020 F 514 0.00 1425 reject_low 395 ALIGNMENT 0 Y12-9j09.p1k chr08 567 62 560731 560730 C 506 0.00 1425 reject_low 145 ALIGNMENT 130 Y12-9j09.p1k chr12 1045 781 1069762 1070026 C 265 83.77 1425 reject_low 378 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 1827 1826 F 503 0.00 1425 reject_low 373 ALIGNMENT 48 Y12-9j09.p1k chr12 1021 936 1069930 1070015 C 86 86.05 1425|0,9 reject_low 372 ALIGNMENT 148 Y12-9j09.p1k chr05 565 969 1650 2054 F 405 80.49 1425 reject_low 128 ALIGNMENT 0 Y12-9j09.p1k chr10 62 744 1669 1668 F 683 0.00 1425 reject_low 124 ALIGNMENT 52 Y12-9j09.p1k chr12 679 565 1069624 1069738 C 115 84.35 1425 reject_low 304 ALIGNMENT 71 Y12-9j09.p1k chr08 900 1045 1662 1807 F 146 83.56 1425 reject_low 238 ALIGNMENT 0 Y12-9j09.p1k chr06 62 995 892 891 F 934 0.00 1425 reject_low 320 ALIGNMENT 0 Y12-9j09.p1k chr09 905 904 2290 2253 F 0 0.00 1425 reject_low 393,394,395,396,397,398 ALIGNMENT 0 Y12-9j09.p1k chr12 641 640 2191 7329 F 0 0.00 1425 reject_low 368 ALIGNMENT 0 Y12-9j09.p1k chr06 62 744 893 892 F 683 0.00 1425 reject_low 178 ALIGNMENT 148 Y12-9j09.p1k chr09 565 820 1974 2229 F 256 88.28 1425 reject_low 393 ALIGNMENT 0 Y12-9j09.p1k chr05 811 908 2039 2038 F 98 0.00 1425 reject_low 264 ALIGNMENT 307 Y12-9j09.p1k chr13 637 1202 1667 2247 F 566 85.87 1425 reject_low 23 ALIGNMENT 0 Y12-9j09.p1k chr08 62 563 1866 1865 F 502 0.00 1425 reject_low 360 ALIGNMENT 928 Y12-9j09.q1k chr15 45 1260 1085336 1086589 F 1216 92.76 1393 reject_low 5 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1578 1577 F 503 0.00 1425 reject_low 20 ALIGNMENT 0 Y12-9j09.p1k chr08 775 908 1932 1931 F 134 0.00 1425 reject_low 244 ALIGNMENT 0 Y12-9j09.p1k chr02 62 899 1497 1496 F 838 0.00 1425 reject_low 291 ALIGNMENT 0 Y12-9j09.p1k chr07 563 62 1089144 1089143 C 502 0.00 1425 reject_low 268 ALIGNMENT 47 Y12-9j09.p1k chr05 576 753 1877 2054 F 178 77.53 1425 reject_low 325 ALIGNMENT 117 Y12-9j09.p1k chr04 881 568 1530064 1530377 C 314 80.89 1425 reject_low 170 ALIGNMENT 0 Y12-9j09.p1k chr05 62 563 1901 1900 F 502 0.00 1425 reject_low 366 ALIGNMENT 225 Y12-9j09.p1k chr06 673 1202 893 1425 F 530 81.51 1425 reject_low 33 ALIGNMENT 0 Y12-9j09.p1k chr02 62 567 1705 1704 F 506 0.00 1425 reject_low 109 ALIGNMENT 38 Y12-9j09.p1k chr12 1024 961 1069963 1070026 C 64 87.50 1425 reject_low 391 ALIGNMENT 0 Y12-9j09.p1k chr12 810 811 2216 7320 F 2 0.00 1425 reject_low 382 ALIGNMENT 87 Y12-9j09.p1k chr15 773 576 1089229 1089426 C 198 83.33 1425 reject_low 237 ALIGNMENT 0 Y12-9j09.p1k chr06 790 908 1261 1260 F 119 0.00 1425 reject_low 326 ALIGNMENT 726 Y12-9j09.q1k chr08 45 937 557690 558614 F 893 94.62 1393 reject_low 17 ALIGNMENT 87 Y12-9j09.p1k chr04 773 576 1530064 1530261 C 198 83.33 1425 reject_low 235 ALIGNMENT 0 Y12-9j09.p1k chr05 62 780 1470 1469 F 719 0.00 1425 reject_low 181 ALIGNMENT 0 Y12-9j09.p1k chr14 821 908 1973 1972 F 88 0.00 1425 reject_low 205 ALIGNMENT 0 Y12-9j09.p1k chr16 630 908 1907 1906 F 279 0.00 1425 reject_low 357 ALIGNMENT 130 Y12-9j09.p1k chr12 781 1045 7326 7590 F 265 83.77 1425 reject_low 377 ALIGNMENT 241 Y12-9j09.p1k chr05 953 565 574893 575281 C 389 88.95 1425 reject_low 61 ALIGNMENT 0 Y12-9j09.p1k chr12 62 563 2150 2149 F 502 0.00 1425 reject_low 390 ALIGNMENT 0 Y12-9j09.p1k chr12 62 575 7661 7660 F 514 0.00 1425 reject_low 330 ALIGNMENT 0 Y12-9j09.p1k chr09 62 744 1686 1685 F 683 0.00 1425 reject_low 123 ALIGNMENT 55 Y12-9j09.p1k chr12 565 679 2079 2193 F 115 85.22 1425|0,3 reject_low 370,380 ALIGNMENT 120 Y12-9j09.p1k chr15 1041 745 1089357 1089653 C 297 81.14 1425 reject_low 152 ALIGNMENT 0 Y12-9j09.p1k chr16 62 575 1818 1817 F 514 0.00 1425 reject_low 335 ALIGNMENT 38 Y12-9j09.p1k chr13 961 1024 1667 1730 F 64 87.50 1425 reject_low 344 ALIGNMENT 53 Y12-9j09.p1k chr12 1021 900 1069894 1070015 C 122 81.97 1425|0,9 reject_low 379 ALIGNMENT 43 Y12-9j09.p1k chr16 643 576 945984 946051 C 68 89.71 1425 reject_low 336 ALIGNMENT 0 Y12-9j09.p1k chr16 62 563 1734 1733 F 502 0.00 1425 reject_low 272 ALIGNMENT 0 Y12-9j09.p1k chr06 811 908 1246 1245 F 98 0.00 1425 reject_low 281 ALIGNMENT 0 Y12-9j09.p1k chr05 908 821 574919 574918 C 88 0.00 1425 reject_low 201 ALIGNMENT 243 Y12-9j09.p1k chr13 673 1045 1667 2039 F 373 89.54 1425 reject_low 47 ALIGNMENT 158 Y12-9j09.p1k chr16 709 1045 1483 1819 F 337 83.38 1425 reject_low 114 ALIGNMENT 0 Y12-9j09.p1k chr14 630 908 1998 1997 F 279 0.00 1425 reject_low 355 ALIGNMENT 0 Y12-9j09.p1k chr08 636 62 560842 560841 C 575 0.00 1425 reject_low 30 ALIGNMENT 0 Y12-9j09.p1k chr08 744 62 560842 560841 C 683 0.00 1425 reject_low 211 ALIGNMENT 0 Y12-9j09.p1k chr09 851 859 2224 2244 F 9 0.00 1425 reject_low 394 ALIGNMENT 32 Y12-9j09.p1k chr10 564 619 2172 2227 F 56 87.50 1425 reject_low 392 ALIGNMENT 230 Y12-9j09.p1k chr02 568 1045 1597 2074 F 478 84.10 1425 reject_low 57 ALIGNMENT 240 Y12-9j09.p1k chr12 1045 673 1076317 1076689 C 373 89.28 1425 reject_low 53 ALIGNMENT 0 Y12-9j09.p1k chr16 600 62 946495 946494 C 539 0.00 1425 reject_low 74 ALIGNMENT 0 Y12-9j09.p1k chr10 62 636 1669 1668 F 575 0.00 1425 reject_low 43 ALIGNMENT 48 Y12-9j09.p1k chr12 1021 936 1076593 1076678 C 86 86.05 1425 reject_low 314 ALIGNMENT 0 Y12-9j09.p1k chr12 62 575 2018 2017 F 514 0.00 1425 reject_low 377 ALIGNMENT 0 Y12-9j09.p1k chr04 780 62 1530489 1530488 C 719 0.00 1425 reject_low 130 ALIGNMENT 0 Y12-9j09.p1k chr02 62 672 1486 1485 F 611 0.00 1425 reject_low 83 ALIGNMENT 0 Y12-9j09.p1k chr16 908 644 945985 945984 C 265 0.00 1425 reject_low 336 ALIGNMENT 0 Y12-9j09.p1k chr12 62 567 7437 7436 F 506 0.00 1425 reject_low 163 ALIGNMENT 87 Y12-9j09.p1k chr12 773 576 1076265 1076462 C 198 83.33 1425 reject_low 378 ALIGNMENT 0 Y12-9j09.p1k chr14 644 908 1976 1975 F 265 0.00 1425 reject_low 333 ALIGNMENT 97 Y12-9j09.p1k chr08 565 810 1687 1932 F 246 82.11 1425 reject_low 216 ALIGNMENT 0 Y12-9j09.p1k chr05 62 575 1877 1876 F 514 0.00 1425 reject_low 325 ALIGNMENT 0 Y12-9j09.p1k chr02 62 564 1558 1557 F 503 0.00 1425 reject_low 73 ALIGNMENT 0 Y12-9j09.p1k chr02 62 600 1486 1485 F 539 0.00 1425 reject_low 75 ALIGNMENT 70 Y12-9j09.p1k chr12 864 1021 7337 7494 F 158 82.28 1425|9,0 reject_low 386 ALIGNMENT 98 Y12-9j09.p1k chr04 820 568 1530089 1530341 C 253 81.82 1425 reject_low 213 ALIGNMENT 0 Y12-9j09.p1k chr13 62 564 1703 1702 F 503 0.00 1425 reject_low 64 ALIGNMENT 0 Y12-9j09.p1k chr16 863 62 946484 946483 C 802 0.00 1425 reject_low 224 ALIGNMENT 0 Y12-9j09.p1k chr10 62 672 1669 1668 F 611 0.00 1425 reject_low 60 ALIGNMENT 0 Y12-9j09.p1k chr16 62 811 1478 1477 F 750 0.00 1425 reject_low 197 ALIGNMENT 0 Y12-9j09.p1k chr12 944 945 1070007 1076273 C 0 0.00 1425 reject_low 372 ALIGNMENT 820 Y12-9j09.p1k chr09 20 1045 1141 2166 F 1026 93.76 1425 ambiguous_tel 2 ALIGNMENT 0 Y12-9j09.p1k chr04 908 810 1530065 1530064 C 99 0.00 1425 reject_low 208 ALIGNMENT 109 Y12-9j09.p1k chr09 781 1045 1686 1950 F 265 81.13 1425 reject_low 159 ALIGNMENT 0 Y12-9j09.p1k chr10 62 564 1777 1776 F 503 0.00 1425 reject_low 56 ALIGNMENT 90 Y12-9j09.p1k chr14 576 773 1801 1998 F 198 83.84 1425 reject_low 229 ALIGNMENT 70 Y12-9j09.p1k chr13 864 1021 1678 1835 F 158 82.28 1425 reject_low 250 ALIGNMENT 0 Y12-9j09.p1k chr16 62 564 1771 1770 F 503 0.00 1425 reject_low 288 ALIGNMENT 0 Y12-9j09.p1k chr14 62 575 1801 1800 F 514 0.00 1425 reject_low 229 ALIGNMENT 0 Y12-9j09.p1k chr16 935 62 946484 946483 C 874 0.00 1425 reject_low 302 ALIGNMENT 0 Y12-9j09.p1k chr09 62 935 1697 1696 F 874 0.00 1425 reject_low 276 ALIGNMENT 0 Y12-9j09.p1k chr02 62 935 1497 1496 F 874 0.00 1425 reject_low 309 ALIGNMENT 148 Y12-9j09.p1k chr16 1021 745 946218 946494 C 277 85.56 1425 reject_low 127 ALIGNMENT 0 Y12-9j09.p1k chr12 62 935 1694 1693 F 874 0.00 1425 reject_low 301 ALIGNMENT 47 Y12-9j09.p1k chr16 1041 936 946378 946483 C 106 82.08 1425 reject_low 302 ALIGNMENT 43 Y12-9j09.p1k chr13 576 643 2002 2069 F 68 89.71 1425 reject_low 332 ALIGNMENT 196 Y12-9j09.p1k chr09 560 886 1897 2223 F 327 88.38 1425 reject_low 375 ALIGNMENT 0 Y12-9j09.p1k chr05 62 564 1686 1685 F 503 0.00 1425 reject_low 138 ALIGNMENT 43 Y12-9j09.p1k chr12 576 643 7661 7728 F 68 89.71 1425 reject_low 330 ALIGNMENT 0 Y12-9j09.p1k chr05 62 899 1481 1480 F 838 0.00 1425 reject_low 241 ALIGNMENT 106 Y12-9j09.p1k chr10 565 856 2029 2320 F 292 80.82 1425 reject_low 180 ALIGNMENT 52 Y12-9j09.p1k chr12 679 565 1076287 1076401 C 115 84.35 1425|3,0 reject_low 371,381 ALIGNMENT 61 Y12-9j09.p1k chr10 900 1041 1680 1821 F 142 81.69 1425 reject_low 261 ALIGNMENT 0 Y12-9j09.p1k chr12 62 744 1683 1682 F 683 0.00 1425 reject_low 129 ALIGNMENT 113 Y12-9j09.p1k chr08 820 568 560442 560694 C 253 83.79 1425 reject_low 177 ALIGNMENT 0 Y12-9j09.p1k chr06 62 708 893 892 F 647 0.00 1425 reject_low 142 ALIGNMENT 33 Y12-9j09.p1k chr16 629 564 945962 946027 C 66 84.85 1425 reject_low 358 ALIGNMENT 0 Y12-9j09.p1k chr05 960 62 575318 575317 C 899 0.00 1425 reject_low 340 ALIGNMENT 123 Y12-9j09.p1k chr12 568 881 1902 2215 F 314 81.53 1425|0,9 reject_low 386 ALIGNMENT 0 Y12-9j09.p1k chr16 821 908 1882 1881 F 88 0.00 1425 reject_low 206 ALIGNMENT 268 Y12-9j09.p1k chr05 601 1045 1470 1914 F 445 88.09 1425 reject_low 40 ALIGNMENT 779 Y12-9j09.p1k chr13 20 989 1122 2091 F 970 93.92 1425 reject_low 14 ALIGNMENT 0 Y12-9j09.p1k chr16 680 908 1885 1884 F 229 0.00 1425 reject_low 288 ALIGNMENT 0 Y12-9j09.p1k chr12 945 944 2207 7345 F 0 0.00 1425 reject_low 373 ALIGNMENT 0 Y12-9j09.p1k chr08 62 600 1651 1650 F 539 0.00 1425 reject_low 219 ALIGNMENT 0 Y12-9j09.p1k chr16 644 908 1885 1884 F 265 0.00 1425 reject_low 335 ALIGNMENT 0 Y12-9j09.p1k chr05 62 636 1470 1469 F 575 0.00 1425 reject_low 97 ALIGNMENT 81 Y12-9j09.p1k chr12 781 1021 1683 1923 F 241 78.84 1425 reject_low 239 ALIGNMENT 301 Y12-9j09.p1k chr15 1202 637 1089073 1089653 C 566 85.51 1425 reject_low 28 ALIGNMENT 70 Y12-9j09.p1k chr15 1021 864 1089485 1089642 C 158 82.28 1425 reject_low 252 ALIGNMENT 0 Y12-9j09.p1k chr02 62 744 1486 1485 F 683 0.00 1425 reject_low 140 ALIGNMENT 0 Y12-9j09.p1k chr07 564 62 1089323 1089322 C 503 0.00 1425 reject_low 100 ALIGNMENT 117 Y12-9j09.p1k chr12 881 568 1076265 1076578 C 314 80.89 1425|9,0 reject_low 389 ALIGNMENT 225 Y12-9j09.p1k chr09 565 1047 1794 2276 F 483 83.64 1425 reject_low 55 ALIGNMENT 56 Y12-9j09.p1k chr08 565 743 1759 1937 F 179 79.33 1425 reject_low 290 ALIGNMENT 0 Y12-9j09.p1k chr13 62 575 2002 2001 F 514 0.00 1425 reject_low 332 ALIGNMENT 0 Y12-9j09.p1k chr14 62 811 1569 1568 F 750 0.00 1425 reject_low 195 ALIGNMENT 0 Y12-9j09.p1k chr13 62 899 1678 1677 F 838 0.00 1425 reject_low 297 ALIGNMENT 0 Y12-9j09.p1k chr13 62 567 1778 1777 F 506 0.00 1425 reject_low 164 ALIGNMENT 0 Y12-9j09.p1k chr05 908 630 574894 574893 C 279 0.00 1425 reject_low 350 ALIGNMENT 0 Y12-9j09.p1k chr08 680 908 1909 1908 F 229 0.00 1425 reject_low 337 ALIGNMENT 70 Y12-9j09.p1k chr16 864 1021 1494 1651 F 158 82.28 1425 reject_low 253 ALIGNMENT 112 Y12-9j09.p1k chr02 812 1024 1481 1693 F 213 84.98 1425 reject_low 168 ALIGNMENT 0 Y12-9j09.p1k chr02 62 564 1918 1917 F 503 0.00 1425 reject_low 222 ALIGNMENT 0 Y12-9j09.p1k chr15 567 62 1089507 1089506 C 506 0.00 1425 reject_low 215 ALIGNMENT 280 Y12-9j09.p1k chr08 1202 637 560261 560841 C 566 84.28 1425 reject_low 30 ALIGNMENT 0 Y12-9j09.p1k chr07 863 62 1089384 1089383 C 802 0.00 1425 reject_low 247 ALIGNMENT 0 Y12-9j09.p1k chr04 908 882 1530065 1530064 C 27 0.00 1425 reject_low 170 ALIGNMENT 832 Y12-9j09.p1k chr02 20 1045 941 1966 F 1026 94.15 1425 reject_low 16 ALIGNMENT 99 Y12-9j09.p1k chr06 601 969 893 1261 F 369 77.24 1425 reject_low 212 ALIGNMENT 0 Y12-9j09.p1k chr15 744 62 1089654 1089653 C 683 0.00 1425 reject_low 152 ALIGNMENT 803 Y12-9j09.p1k chr08 989 20 560417 561386 C 970 94.74 1425 reject_low 17 ALIGNMENT 0 Y12-9j09.p1k chr05 636 62 575318 575317 C 575 0.00 1425 reject_low 22 ALIGNMENT 48 Y12-9j09.p1k chr14 936 1021 1585 1670 F 86 86.05 1425 reject_low 316 ALIGNMENT 0 Y12-9j09.p1k chr07 935 62 1089384 1089383 C 874 0.00 1425 reject_low 312 ALIGNMENT 641 Y12-9j09.p1k chr06 20 937 348 1265 F 918 90.41 1425 reject_low 18 ALIGNMENT 0 Y12-9j09.p1k chr12 62 564 7506 7505 F 503 0.00 1425 reject_low 184 ALIGNMENT 112 Y12-9j09.p1k chr12 812 1024 1678 1890 F 213 84.98 1425 reject_low 169 ALIGNMENT 0 Y12-9j09.p1k chr10 893 908 2320 2319 F 16 0.00 1425 reject_low 176 ALIGNMENT 38 Y12-9j09.p1k chr08 1024 961 560778 560841 C 64 87.50 1425 reject_low 342 ALIGNMENT 53 Y12-9j09.p1k chr12 900 1021 7337 7458 F 122 81.97 1425|9,0 reject_low 376 ALIGNMENT 0 Y12-9j09.p1k chr05 564 62 575138 575137 C 503 0.00 1425 reject_low 182 ALIGNMENT 0 Y12-9j09.p1k chr09 62 564 2046 2045 F 503 0.00 1425 reject_low 200 ALIGNMENT 34 Y12-9j09.p1k chr06 564 753 1072 1261 F 190 74.74 1425 reject_low 362 ALIGNMENT 0 Y12-9j09.p1k chr16 62 567 1630 1629 F 506 0.00 1425 reject_low 206 ALIGNMENT 0 Y12-9j09.p1k chr05 754 908 2054 2053 F 155 0.00 1425 reject_low 325 ALIGNMENT 0 Y12-9j09.p1k chr16 62 564 1519 1518 F 503 0.00 1425 reject_low 66 ALIGNMENT 254 Y12-9j09.p1k chr10 637 1041 1669 2073 F 405 88.89 1425 reject_low 43 ALIGNMENT 220 Y12-9j09.p1k chr09 565 922 1866 2223 F 358 88.83 1425 reject_low 82 ALIGNMENT 746 Y12-9j09.q1k chr13 941 45 3887 4817 C 897 95.21 1393 reject_low 14 ALIGNMENT 173 Y12-9j09.p1k chr16 565 917 1555 1907 F 353 84.70 1425 reject_low 104 ALIGNMENT 109 Y12-9j09.p1k chr09 576 811 2021 2256 F 236 84.32 1425 reject_low 395 ALIGNMENT 37 Y12-9j09.p1k chr10 576 752 2148 2324 F 177 75.71 1425 reject_low 361 ALIGNMENT 0 Y12-9j09.p1k chr05 62 672 1470 1469 F 611 0.00 1425 reject_low 91 ALIGNMENT 0 Y12-9j09.p1k chr12 567 62 1069880 1069879 C 506 0.00 1425 reject_low 214 ALIGNMENT 0 Y12-9j09.p1k chr09 808 908 2288 2287 F 101 0.00 1425 reject_low 200 ALIGNMENT 0 Y12-9j09.p1k chr13 62 672 1667 1666 F 611 0.00 1425 reject_low 47 ALIGNMENT 35 Y12-9j09.p1k chr06 996 1045 892 941 F 50 90.00 1425 reject_low 320 ALIGNMENT 91 Y12-9j09.p1k chr15 1045 812 1089425 1089658 C 234 80.34 1425 reject_low 196 ALIGNMENT 0 Y12-9j09.p1k chr15 563 62 1089295 1089294 C 502 0.00 1425 reject_low 356 ALIGNMENT 43 Y12-9j09.p1k chr08 576 679 1806 1909 F 104 82.69 1425 reject_low 337 ALIGNMENT 43 Y12-9j09.p1k chr09 576 643 2165 2232 F 68 89.71 1425 reject_low 397 ALIGNMENT 91 Y12-9j09.p1k chr12 812 1045 7321 7554 F 234 80.34 1425|5,0 reject_low 382,383 ALIGNMENT 0 Y12-9j09.p1k chr02 62 708 1486 1485 F 647 0.00 1425 reject_low 95 ALIGNMENT 38 Y12-9j09.p1k chr14 961 1024 1574 1637 F 64 87.50 1425 reject_low 345 ALIGNMENT 0 Y12-9j09.p1k chr16 575 62 946304 946303 C 514 0.00 1425 reject_low 94 ALIGNMENT 243 Y12-9j09.p1k chr16 673 1045 1483 1855 F 373 89.54 1425 reject_low 49 ALIGNMENT 0 Y12-9j09.p1k chr13 62 780 1667 1666 F 719 0.00 1425 reject_low 134 ALIGNMENT 37 Y12-9j09.p1k chr08 643 576 560439 560506 C 68 86.76 1425 reject_low 359 ALIGNMENT 70 Y12-9j09.p1k chr08 1021 864 560673 560830 C 158 82.28 1425 reject_low 248 ALIGNMENT 75 Y12-9j09.p1k chr02 781 1021 1486 1726 F 241 78.01 1425 reject_low 242 ALIGNMENT 0 Y12-9j09.p1k chr08 708 62 560842 560841 C 647 0.00 1425 reject_low 96 ALIGNMENT 0 Y12-9j09.p1k chr13 62 563 2026 2025 F 502 0.00 1425 reject_low 354 ALIGNMENT 0 Y12-9j09.p1k chr06 62 960 893 892 F 899 0.00 1425 reject_low 262 ALIGNMENT 1052 Y12-9j10.q1k chr12 38 1239 455194 456410 F 1202 96.76 1379 accept 0 ALIGNMENT 1052 Y12-9j10.q1k chr12 38 1239 464331 465547 F 1202 96.76 1379 accept 1 ALIGNMENT 955 Y12-9j10.p1k chr12 1165 17 457955 459105 C 1149 95.91 1433 accept 0 ALIGNMENT 955 Y12-9j10.p1k chr12 1165 17 467092 468242 C 1149 95.91 1433 accept 1 ALIGNMENT 21 Y12-9j11.q1k chr04 895 866 1346521 1346550 C 30 96.67 1379 reject_low 4 ALIGNMENT 0 Y12-9j11.q1k chr16 62 859 908138 908137 F 798 0.00 1379 reject_low 1 ALIGNMENT 20 Y12-9j11.q1k chr07 861 888 379164 379191 F 28 92.86 1379 reject_low 5 ALIGNMENT 25 Y12-9j11.q1k chr16 860 899 908138 908177 F 40 90.00 1379 reject_low 1 ALIGNMENT 0 Y12-9j11.q1k chr07 62 860 379164 379163 F 799 0.00 1379 reject_low 5 ALIGNMENT 979 Y12-9j11.q1k chr07 1231 31 448544 449744 C 1201 95.00 1379 accept 0 ALIGNMENT 20 Y12-9j11.q1k chr04 863 899 747522 747558 F 37 91.89 1379 reject_low 2 ALIGNMENT 0 Y12-9j11.q1k chr04 913 896 1346522 1346521 C 18 0.00 1379 reject_low 4 ALIGNMENT 0 Y12-9j11.q1k chr05 862 62 83185 83184 C 801 0.00 1379 reject_low 3 ALIGNMENT 21 Y12-9j11.q1k chr05 896 863 83151 83184 C 34 94.12 1379 reject_low 3 ALIGNMENT 0 Y12-9j11.q1k chr04 62 862 747522 747521 F 801 0.00 1379 reject_low 2 ALIGNMENT 0 Y12-9j11.q1k chr05 913 897 83152 83151 C 17 0.00 1379 reject_low 3 ALIGNMENT 0 Y12-9j11.q1k chr04 865 62 1346551 1346550 C 804 0.00 1379 reject_low 4 ALIGNMENT 0 Y12-9j11.q1k chr07 889 913 379191 379190 F 25 0.00 1379 reject_low 5 ALIGNMENT 991 Y12-9j11.p1k chr07 20 1177 444181 445355 F 1158 96.46 1409 accept 0 ALIGNMENT 996 Y12-9j12.p1k chr16 1152 20 128142 129287 C 1133 96.38 1409 accept 0 ALIGNMENT 990 Y12-9j12.q1k chr16 39 1278 125487 126725 F 1240 93.87 1400 accept 0 ALIGNMENT 765 Y12-9j14.p1k chr04 995 12 1013287 1014254 C 984 93.80 1451 accept 0 ALIGNMENT 599 Y12-9j15.q1k chr04 26 865 1406261 1407098 F 840 91.90 1275 accept 0 ALIGNMENT 930 Y12-9j16.q1k chr02 38 1227 532510 533704 F 1190 94.12 1282 accept 0 ALIGNMENT 1049 Y12-9j16.p1k chr02 1226 20 535632 536838 C 1207 96.52 1455 accept 0 ALIGNMENT 978 Y12-9j17.q1k chr14 36 1202 719087 720257 F 1167 95.63 1298 accept 0 ALIGNMENT 999 Y12-9j17.p1k chr14 1181 19 722015 723197 C 1163 96.47 1391 accept 0 ALIGNMENT 993 Y12-9j18.p1k chr16 16 1148 17860 19002 F 1133 96.65 1367 accept 0 ALIGNMENT 1009 Y12-9j18.p1k chr15 1148 21 1071866 1073003 C 1128 97.16 1367 reject_low 1 ALIGNMENT 760 Y12-9j18.q1k chr16 943 37 21353 22273 C 907 95.59 1226 accept 0 ALIGNMENT 91 Y12-9j19.p1k chr08 972 376 291047 291643 C 597 73.87 1344 reject_low 3 ALIGNMENT 940 Y12-9j19.p1k chr10 21 1093 27523 28606 F 1073 97.02 1344 accept 0 ALIGNMENT 163 Y12-9j19.p1k chr04 961 36 1154350 1155275 C 926 74.30 1344 reject_low 1 ALIGNMENT 0 Y12-9j19.p1k chr08 375 62 291644 291643 C 314 0.00 1344 reject_low 3 ALIGNMENT 163 Y12-9j19.p1k chr04 961 36 1159742 1160667 C 926 74.30 1344 reject_low 2 ALIGNMENT 1024 Y12-9j19.q1k chr10 1198 35 30269 31441 C 1164 96.99 1261 accept 0 ALIGNMENT 969 Y12-9j20.p1k chr02 18 1112 452062 453170 F 1095 96.44 1348 accept 0 ALIGNMENT 970 Y12-9j20.q1k chr02 1219 39 457469 458668 C 1181 94.92 1262 accept 0 ALIGNMENT 986 Y12-9j21.q1k chr07 37 1145 418573 419694 F 1109 97.75 1218 accept 0 ALIGNMENT 959 Y12-9j21.p1k chr07 1105 23 421524 422613 C 1083 97.14 1289 accept 0 ALIGNMENT 119 Y12-9j22.p1k chr12 146 264 472464 472582 F 119 100.00 1317 reject_low 4 ALIGNMENT 119 Y12-9j22.p1k chr12 146 264 482044 482162 F 119 100.00 1317 reject_low 5 ALIGNMENT 0 Y12-9j22.p1k chr12 265 850 472582 472581 F 586 0.00 1317 reject_low 4 ALIGNMENT 0 Y12-9j22.p1k chr12 62 145 485696 485695 F 84 0.00 1317 reject_low 6 ALIGNMENT 0 Y12-9j22.p1k chr12 265 850 485814 485813 F 586 0.00 1317 reject_low 6 ALIGNMENT 0 Y12-9j22.p1k chr12 265 850 468930 468929 F 586 0.00 1317 reject_low 2 ALIGNMENT 128 Y12-9j22.p1k chr12 146 279 489348 489481 F 134 98.51 1317 reject_low 3 ALIGNMENT 0 Y12-9j22.p1k chr12 62 145 472464 472463 F 84 0.00 1317 reject_low 4 ALIGNMENT 239 Y12-9j22.p1k chr12 20 264 468685 468930 F 245 99.59 1317 reject_low 2 ALIGNMENT 0 Y12-9j22.p1k chr12 62 145 489348 489347 F 84 0.00 1317 reject_low 3 ALIGNMENT 102 Y12-9j22.p1k chr12 999 1125 451426 451555 F 127 94.49 1317 reject_low 1 ALIGNMENT 0 Y12-9j22.p1k chr12 62 998 451426 451425 F 937 0.00 1317 reject_low 1 ALIGNMENT 0 Y12-9j22.p1k chr12 62 145 482044 482043 F 84 0.00 1317 reject_low 5 ALIGNMENT 0 Y12-9j22.p1k chr12 265 850 482162 482161 F 586 0.00 1317 reject_low 5 ALIGNMENT 119 Y12-9j22.p1k chr12 146 264 485696 485814 F 119 100.00 1317 reject_low 6 ALIGNMENT 997 Y12-9j22.q1k chr12 1210 38 454524 455702 C 1173 95.91 1218 reject_low 1 ALIGNMENT 997 Y12-9j22.q1k chr12 1210 38 463661 464839 C 1173 95.91 1218 accept 0 ALIGNMENT 0 Y12-9j22.p1k chr12 280 850 489481 489480 F 571 0.00 1317 reject_low 3 ALIGNMENT 864 Y12-9j22.p1k chr12 20 1125 459548 460692 F 1106 94.21 1317 accept 0 ALIGNMENT 932 Y12-9j23.q1k chr12 1070 29 830914 831958 C 1042 97.60 1250 accept_chi 0 ALIGNMENT 308 Y12-9j23.p1k chr07 683 22 421961 422612 C 662 83.99 1425 accept_chi 1 ALIGNMENT 981 Y12-9j24.q1k chr08 1190 37 109230 110386 C 1154 95.93 1254 accept 0 ALIGNMENT 0 Y12-9j24.p1k chr11 636 862 445721 445720 F 227 0.00 1304 reject_low 1 ALIGNMENT 1019 Y12-9j24.p1k chr08 22 1260 106134 107382 F 1239 95.16 1304 accept 0 ALIGNMENT 118 Y12-9j24.p1k chr11 52 635 445138 445721 F 584 73.97 1304 reject_low 1 ALIGNMENT 168 Y12-9k02.q1k chr14 378 46 608588 608920 C 333 84.08 1317 reject_low 1 ALIGNMENT 1055 Y12-9k02.q1k chr12 1237 31 638174 639397 C 1207 96.60 1317 accept 0 ALIGNMENT 0 Y12-9k02.q1k chr14 867 379 608589 608588 C 489 0.00 1317 reject_low 1 ALIGNMENT 800 Y12-9k02.p1k chr12 18 997 634251 635226 F 980 94.69 1385 accept 0 ALIGNMENT 863 Y12-9k03.p1k chr14 1172 24 521763 522899 C 1149 93.65 1358 reject_low 16 ALIGNMENT 813 Y12-9k03.p1k chr15 1172 21 597418 598575 C 1152 91.49 1358 reject_low 9 ALIGNMENT 0 Y12-9k03.q1k chr12 402 62 221007 221006 C 341 0.00 1277 reject_low 7 ALIGNMENT 426 Y12-9k03.q1k chr04 403 1080 1095762 1096448 F 678 89.09 1277 reject_low 13 ALIGNMENT 0 Y12-9k03.q1k chr14 896 735 96611 96610 C 162 0.00 1277 reject_low 31 ALIGNMENT 950 Y12-9k03.p1k chr13 24 1172 359166 360320 F 1149 95.56 1358 ambiguous_trans 1 ALIGNMENT 462 Y12-9k03.q1k chr10 403 1080 472377 473063 F 678 90.56 1277 reject_low 8 ALIGNMENT 0 Y12-9k03.q1k chr04 62 402 1095762 1095761 F 341 0.00 1277 reject_low 13 ALIGNMENT 813 Y12-9k03.p1k chr16 1172 21 847014 848171 C 1152 91.49 1358 reject_low 14 ALIGNMENT 624 Y12-9k03.q1k chr02 403 1176 221040 221824 F 774 94.83 1277 ambiguous_trans 0 ALIGNMENT 455 Y12-9k03.q1k chr15 403 1080 594821 595501 F 678 90.41 1277 reject_low 9 ALIGNMENT 0 Y12-9k03.q1k chr02 62 401 226623 226622 F 340 0.00 1277 reject_low 28 ALIGNMENT 816 Y12-9k03.p1k chr13 1172 21 186767 187924 C 1152 91.58 1358 reject_low 10 ALIGNMENT 816 Y12-9k03.p1k chr05 21 1172 445557 446714 F 1152 91.58 1358 reject_low 18 ALIGNMENT 465 Y12-9k03.q1k chr07 403 1080 535764 536450 F 678 90.71 1277 reject_low 26 ALIGNMENT 0 Y12-9k03.q1k chr16 62 402 844408 844407 F 341 0.00 1277 reject_low 14 ALIGNMENT 810 Y12-9k03.p1k chr04 1172 21 1209293 1210450 C 1152 91.41 1358 reject_low 22 ALIGNMENT 945 Y12-9k03.p1k chr12 21 1172 217246 218403 F 1152 95.31 1358 reject_low 7 ALIGNMENT 942 Y12-9k03.p1k chr05 21 1172 494656 495813 F 1152 95.23 1358 reject_low 15 ALIGNMENT 816 Y12-9k03.p1k chr13 1172 21 198934 200091 C 1152 91.58 1358 reject_low 19 ALIGNMENT 444 Y12-9k03.q1k chr15 403 1080 117702 118388 F 678 89.68 1277 reject_low 12 ALIGNMENT 942 Y12-9k03.p1k chr08 21 1172 545769 546926 F 1152 95.23 1358 reject_low 6 ALIGNMENT 400 Y12-9k03.q1k chr01 1080 403 165478 166163 C 678 87.61 1277 reject_low 27 ALIGNMENT 449 Y12-9k03.q1k chr08 1080 403 548957 549637 C 678 90.12 1277 reject_low 6 ALIGNMENT 635 Y12-9k03.q1k chr13 1176 402 362135 362918 C 775 95.23 1277 ambiguous_trans 1 ALIGNMENT 0 Y12-9k03.q1k chr01 896 735 160240 160239 C 162 0.00 1277 reject_low 32 ALIGNMENT 0 Y12-9k03.q1k chr10 62 402 472377 472376 F 341 0.00 1277 reject_low 8 ALIGNMENT 311 Y12-9k03.q1k chr13 734 402 357004 357336 C 333 99.70 1277 reject_low 29 ALIGNMENT 453 Y12-9k03.q1k chr16 1080 403 855864 856550 C 678 90.12 1277 reject_low 11 ALIGNMENT 215 Y12-9k03.q1k chr01 734 402 160239 160576 C 333 90.39 1277 reject_low 32 ALIGNMENT 0 Y12-9k03.q1k chr01 402 62 166164 166163 C 341 0.00 1277 reject_low 27 ALIGNMENT 813 Y12-9k03.p1k chr04 1172 21 1098365 1099522 C 1152 91.49 1358 reject_low 13 ALIGNMENT 858 Y12-9k03.p1k chr04 21 1172 880459 881616 F 1152 92.80 1358 reject_low 17 ALIGNMENT 426 Y12-9k03.q1k chr16 403 1080 844408 845094 F 678 89.09 1277 reject_low 14 ALIGNMENT 308 Y12-9k03.q1k chr14 734 402 96610 96942 C 333 99.40 1277 reject_low 31 ALIGNMENT 423 Y12-9k03.q1k chr12 1080 403 220320 221006 C 678 88.94 1277 reject_low 7 ALIGNMENT 815 Y12-9k03.p1k chr10 1172 24 480564 481718 C 1149 91.64 1358 reject_low 21 ALIGNMENT 0 Y12-9k03.q1k chr02 62 402 221040 221039 F 341 0.00 1277 ambiguous_trans 0 ALIGNMENT 30 Y12-9k03.q1k chr14 402 432 102548 102578 F 31 100.00 1277 reject_low 34 ALIGNMENT 0 Y12-9k03.q1k chr14 401 62 96943 96942 C 340 0.00 1277 reject_low 31 ALIGNMENT 0 Y12-9k03.q1k chr04 62 402 802900 802899 F 341 0.00 1277 reject_low 25 ALIGNMENT 0 Y12-9k03.q1k chr15 651 896 594759 594758 F 246 0.00 1277 reject_low 33 ALIGNMENT 473 Y12-9k03.q1k chr14 1080 403 101843 102523 C 678 91.00 1277 reject_low 5 ALIGNMENT 85 Y12-9k03.q1k chr15 521 650 594630 594759 F 130 90.77 1277 reject_low 33 ALIGNMENT 947 Y12-9k03.p1k chr07 24 1172 819560 820714 F 1149 95.47 1358 reject_low 4 ALIGNMENT 0 Y12-9k03.q1k chr02 62 398 259572 259571 F 337 0.00 1277 reject_low 3 ALIGNMENT 816 Y12-9k03.p1k chr10 1172 21 474980 476137 C 1152 91.58 1358 reject_low 8 ALIGNMENT 809 Y12-9k03.p1k chr13 24 1157 374864 376001 F 1134 91.80 1358 reject_low 24 ALIGNMENT 0 Y12-9k03.q1k chr13 896 735 357005 357004 C 162 0.00 1277 reject_low 29 ALIGNMENT 813 Y12-9k03.p1k chr16 21 1172 806802 807959 F 1152 91.49 1358 reject_low 20 ALIGNMENT 0 Y12-9k03.q1k chr13 401 62 362919 362918 C 340 0.00 1277 ambiguous_trans 1 ALIGNMENT 455 Y12-9k03.q1k chr07 1080 403 822631 823311 C 678 90.41 1277 reject_low 4 ALIGNMENT 311 Y12-9k03.q1k chr02 402 734 226623 226955 F 333 99.70 1277 reject_low 28 ALIGNMENT 947 Y12-9k03.p1k chr02 1172 24 262173 263330 C 1149 95.56 1358 reject_low 3 ALIGNMENT 126 Y12-9k03.q1k chr01 402 267 182818 182953 C 136 99.26 1277 reject_low 2 ALIGNMENT 453 Y12-9k03.q1k chr02 399 1080 259572 260256 F 682 90.18 1277 reject_low 3 ALIGNMENT 0 Y12-9k03.q1k chr01 401 62 160577 160576 C 340 0.00 1277 reject_low 32 ALIGNMENT 810 Y12-9k03.p1k chr12 1172 21 653427 654584 C 1152 91.41 1358 reject_low 23 ALIGNMENT 0 Y12-9k03.q1k chr15 62 520 594630 594629 F 459 0.00 1277 reject_low 33 ALIGNMENT 0 Y12-9k03.q1k chr15 62 402 117702 117701 F 341 0.00 1277 reject_low 12 ALIGNMENT 0 Y12-9k03.q1k chr14 402 62 102524 102523 C 341 0.00 1277 reject_low 5 ALIGNMENT 0 Y12-9k03.q1k chr14 62 401 102548 102547 F 340 0.00 1277 reject_low 34 ALIGNMENT 311 Y12-9k03.q1k chr11 734 403 517095 517426 C 332 99.70 1277 reject_low 30 ALIGNMENT 0 Y12-9k03.q1k chr07 402 62 823312 823311 C 341 0.00 1277 reject_low 4 ALIGNMENT 983 Y12-9k03.p1k chr02 1172 24 223639 224793 C 1149 96.52 1358 ambiguous_trans 0 ALIGNMENT 816 Y12-9k03.p1k chr15 1172 21 120305 121462 C 1152 91.58 1358 reject_low 12 ALIGNMENT 0 Y12-9k03.q1k chr07 62 402 535764 535763 F 341 0.00 1277 reject_low 26 ALIGNMENT 0 Y12-9k03.q1k chr13 62 402 184170 184169 F 341 0.00 1277 reject_low 10 ALIGNMENT 0 Y12-9k03.q1k chr13 401 62 357337 357336 C 340 0.00 1277 reject_low 29 ALIGNMENT 815 Y12-9k03.p1k chr16 24 1172 852793 853947 F 1149 91.64 1358 reject_low 11 ALIGNMENT 0 Y12-9k03.q1k chr16 402 62 856551 856550 C 341 0.00 1277 reject_low 11 ALIGNMENT 0 Y12-9k03.q1k chr01 896 403 182819 182818 C 494 0.00 1277 reject_low 2 ALIGNMENT 0 Y12-9k03.q1k chr01 266 62 182954 182953 C 205 0.00 1277 reject_low 2 ALIGNMENT 0 Y12-9k03.q1k chr08 402 62 549638 549637 C 341 0.00 1277 reject_low 6 ALIGNMENT 0 Y12-9k03.q1k chr11 402 62 517427 517426 C 341 0.00 1277 reject_low 30 ALIGNMENT 0 Y12-9k03.q1k chr11 896 735 517096 517095 C 162 0.00 1277 reject_low 30 ALIGNMENT 0 Y12-9k03.q1k chr02 735 896 226955 226954 F 162 0.00 1277 reject_low 28 ALIGNMENT 0 Y12-9k03.q1k chr14 433 896 102578 102577 F 464 0.00 1277 reject_low 34 ALIGNMENT 449 Y12-9k03.q1k chr13 403 1080 184170 184850 F 678 90.12 1277 reject_low 10 ALIGNMENT 932 Y12-9k03.p1k chr14 24 1172 98772 99926 F 1149 95.04 1358 reject_low 5 ALIGNMENT 587 Y12-9k03.q1k chr04 403 1176 802900 803681 F 774 93.28 1277 reject_low 25 ALIGNMENT 0 Y12-9k03.q1k chr15 62 402 594821 594820 F 341 0.00 1277 reject_low 9 ALIGNMENT 992 Y12-9k04.q1k chr02 31 1251 327352 328580 F 1221 95.74 1289 accept_chi 0 ALIGNMENT 979 Y12-9k04.p1k chr08 1142 21 373253 374395 C 1122 96.43 1365 accept_chi 1 ALIGNMENT 1072 Y12-9k06.q1k chr13 1240 33 102547 103770 C 1208 96.69 1345 accept 0 ALIGNMENT 950 Y12-9k06.p1k chr13 19 1088 99266 100334 F 1070 97.76 1358 accept 0 ALIGNMENT 1015 Y12-9k07.p1k chr02 1154 20 324608 325755 C 1135 97.44 1427 accept 0 ALIGNMENT 899 Y12-9k09.q1k chr13 1081 35 748511 749572 C 1047 97.13 1352 accept 0 ALIGNMENT 1000 Y12-9k09.p1k chr13 20 1211 744619 745828 F 1192 95.30 1430 accept 0 ALIGNMENT 896 Y12-9k11.p1k chr07 15 1148 660427 661561 F 1134 94.71 1399 accept 0 ALIGNMENT 996 Y12-9k11.q1k chr07 1221 35 664469 665665 C 1187 95.28 1258 accept 0 ALIGNMENT 901 Y12-9k12.p1k chr13 21 1041 806372 807408 F 1021 97.45 1328 accept 0 ALIGNMENT 954 Y12-9k12.q1k chr13 1153 36 811692 812819 C 1118 96.42 1266 accept 0 ALIGNMENT 946 Y12-9k13.p1k chr11 25 1121 394614 395720 F 1097 96.44 1351 accept_chi 1 ALIGNMENT 975 Y12-9k13.q1k chr08 33 1164 57980 59105 F 1132 96.47 1292 accept_chi 0 ALIGNMENT 0 Y12-9k14.q1k chr13 858 633 209872 209871 C 226 0.00 1233 reject_low 6 ALIGNMENT 26 Y12-9k14.q1k chr13 632 596 209871 209907 C 37 94.59 1233 reject_low 6 ALIGNMENT 21 Y12-9k14.q1k chr11 636 599 280029 280066 C 38 92.11 1233 reject_low 10 ALIGNMENT 26 Y12-9k14.q1k chr11 635 599 386785 386821 C 37 97.30 1233 reject_low 7 ALIGNMENT 20 Y12-9k14.q1k chr15 626 594 110841 110875 C 33 93.94 1233 reject_low 9 ALIGNMENT 0 Y12-9k14.q1k chr13 858 650 354173 354172 C 209 0.00 1233 reject_low 5 ALIGNMENT 21 Y12-9k14.q1k chr13 654 608 248130 248176 C 47 85.11 1233 reject_low 4 ALIGNMENT 0 Y12-9k14.q1k chr11 858 636 386786 386785 C 223 0.00 1233 reject_low 7 ALIGNMENT 21 Y12-9k14.q1k chr09 627 592 153581 153616 C 36 91.67 1233 reject_low 8 ALIGNMENT 23 Y12-9k14.q1k chr13 649 600 354172 354221 C 50 86.00 1233 reject_low 5 ALIGNMENT 36 Y12-9k14.q1k chr02 596 648 541450 541502 F 53 92.45 1233 reject_low 2 ALIGNMENT 0 Y12-9k14.q1k chr08 649 858 365429 365428 F 210 0.00 1233 reject_low 1 ALIGNMENT 0 Y12-9k14.q1k chr11 598 62 386822 386821 C 537 0.00 1233 reject_low 7 ALIGNMENT 1028 Y12-9k14.p1k chr04 1226 22 1041002 1042219 C 1205 95.10 1385 accept 0 ALIGNMENT 0 Y12-9k14.q1k chr02 62 595 541450 541449 F 534 0.00 1233 reject_low 2 ALIGNMENT 0 Y12-9k14.q1k chr08 62 582 365364 365363 F 521 0.00 1233 reject_low 1 ALIGNMENT 0 Y12-9k14.q1k chr02 649 858 541502 541501 F 210 0.00 1233 reject_low 2 ALIGNMENT 32 Y12-9k14.q1k chr04 600 649 810724 810773 F 50 92.00 1233 reject_low 3 ALIGNMENT 0 Y12-9k14.q1k chr13 858 655 248131 248130 C 204 0.00 1233 reject_low 4 ALIGNMENT 0 Y12-9k14.q1k chr09 591 62 153617 153616 C 530 0.00 1233 reject_low 8 ALIGNMENT 0 Y12-9k14.q1k chr09 858 628 153582 153581 C 231 0.00 1233 reject_low 8 ALIGNMENT 0 Y12-9k14.q1k chr11 858 637 280030 280029 C 222 0.00 1233 reject_low 10 ALIGNMENT 932 Y12-9k14.q1k chr04 29 1165 1038075 1039230 F 1137 96.04 1233 accept 0 ALIGNMENT 0 Y12-9k14.q1k chr15 593 62 110876 110875 C 532 0.00 1233 reject_low 9 ALIGNMENT 0 Y12-9k14.q1k chr13 607 62 248177 248176 C 546 0.00 1233 reject_low 4 ALIGNMENT 0 Y12-9k14.q1k chr04 62 599 810724 810723 F 538 0.00 1233 reject_low 3 ALIGNMENT 0 Y12-9k14.q1k chr13 599 62 354222 354221 C 538 0.00 1233 reject_low 5 ALIGNMENT 0 Y12-9k14.q1k chr11 598 62 280067 280066 C 537 0.00 1233 reject_low 10 ALIGNMENT 0 Y12-9k14.q1k chr04 650 858 810773 810772 F 209 0.00 1233 reject_low 3 ALIGNMENT 0 Y12-9k14.q1k chr13 595 62 209908 209907 C 534 0.00 1233 reject_low 6 ALIGNMENT 24 Y12-9k14.q1k chr08 583 648 365364 365429 F 66 81.82 1233 reject_low 1 ALIGNMENT 0 Y12-9k14.q1k chr15 858 627 110842 110841 C 232 0.00 1233 reject_low 9 ALIGNMENT 1008 Y12-9k16.p1k chr11 22 1186 186414 187591 F 1165 95.88 1389 accept 0 ALIGNMENT 897 Y12-9k16.q1k chr11 1111 33 189722 190809 C 1079 96.39 1258 accept 0 ALIGNMENT 1035 Y12-9k19.q1k chr14 27 1228 619475 620677 F 1202 96.51 1288 accept 0 ALIGNMENT 1089 Y12-9k19.p1k chr14 1288 22 623747 625031 C 1267 96.37 1390 accept 0 ALIGNMENT 893 Y12-9k20.p1k chr12 1025 18 211091 212106 C 1008 96.92 1303 accept 0 ALIGNMENT 1013 Y12-9k20.q1k chr12 34 1265 206974 208204 F 1232 95.45 1293 accept 0 ALIGNMENT 0 Y12-9k21.p1k chr10 835 62 517801 517800 C 774 0.00 1398 reject_low 3 ALIGNMENT 981 Y12-9k21.q1k chr05 1131 32 102449 103544 C 1100 97.18 1204 accept 0 ALIGNMENT 61 Y12-9k21.p1k chr03 838 909 149917 149988 F 72 97.22 1398 reject_low 4 ALIGNMENT 70 Y12-9k21.p1k chr15 838 916 710201 710279 F 79 97.47 1398 reject_low 2 ALIGNMENT 0 Y12-9k21.p1k chr16 837 62 338919 338918 C 776 0.00 1398 reject_low 1 ALIGNMENT 904 Y12-9k21.p1k chr05 22 1182 99317 100464 F 1161 93.97 1398 accept 0 ALIGNMENT 66 Y12-9k21.p1k chr16 926 838 338828 338918 C 89 93.26 1398 reject_low 1 ALIGNMENT 64 Y12-9k21.p1k chr10 910 836 517726 517800 C 75 97.33 1398 reject_low 3 ALIGNMENT 0 Y12-9k21.p1k chr15 62 837 710201 710200 F 776 0.00 1398 reject_low 2 ALIGNMENT 0 Y12-9k21.p1k chr03 62 837 149917 149916 F 776 0.00 1398 reject_low 4 ALIGNMENT 1078 Y12-9k22.p1k chr13 1235 18 488306 489538 C 1218 96.63 1313 accept 0 ALIGNMENT 1023 Y12-9k22.q1k chr13 35 1165 484326 485451 F 1131 97.44 1212 accept 0 ALIGNMENT 1011 Y12-9k23.q1k chr04 1153 31 352148 353266 C 1123 97.51 1168 accept 0 ALIGNMENT 882 Y12-9k23.p1k chr04 24 1081 348974 350045 F 1058 97.16 1318 accept 0 ALIGNMENT 875 Y12-9k24.p1k chr04 17 981 278140 279116 F 965 98.24 1263 accept 0 ALIGNMENT 926 Y12-9k24.q1k chr04 1152 35 280914 282029 C 1118 95.53 1181 accept 0 ALIGNMENT 1064 Y12-9l01.p1k chr02 1188 25 177739 178910 C 1164 97.94 1361 accept 0 ALIGNMENT 977 Y12-9l01.q1k chr02 31 1222 174459 175659 F 1192 95.55 1330 accept 0 ALIGNMENT 931 Y12-9l02.q1k chr10 18 1209 670902 672097 F 1192 94.30 1318 accept 0 ALIGNMENT 870 Y12-9l02.p1k chr10 1169 16 674277 675416 C 1154 95.06 1394 accept 0 ALIGNMENT 992 Y12-9l03.p1k chr11 1147 17 473272 474416 C 1131 96.91 1358 accept 0 ALIGNMENT 1019 Y12-9l03.q1k chr11 31 1302 470361 471629 F 1272 94.58 1321 accept 0 ALIGNMENT 922 Y12-9l06.q1k chr16 36 1102 828188 829271 F 1067 96.16 1308 accept 0 ALIGNMENT 1032 Y12-9l06.p1k chr16 1221 19 831640 832856 C 1203 95.68 1414 accept 0 ALIGNMENT 988 Y12-9l07.p1k chr16 1296 25 372535 373804 C 1272 94.10 1497 accept 0 ALIGNMENT 933 Y12-9l07.q1k chr16 32 1112 368133 369196 F 1081 97.04 1311 accept 0 ALIGNMENT 1026 Y12-9l08.q1k chr16 1252 33 123443 124675 C 1220 95.90 1260 accept 0 ALIGNMENT 1011 Y12-9l08.p1k chr16 16 1174 119773 120937 F 1159 97.41 1438 accept 0 ALIGNMENT 997 Y12-9l09.q1k chr04 31 1144 451365 452487 F 1114 97.40 1376 accept 0 ALIGNMENT 1032 Y12-9l09.p1k chr04 1194 21 455380 456571 C 1174 97.02 1429 accept 0 ALIGNMENT 242 Y12-9l09.q1k chr02 45 819 240105 240879 F 775 77.81 1376 reject_low 1 ALIGNMENT 968 Y12-9l10.q1k chr10 25 1206 131403 132566 F 1182 95.94 1432 accept 0 ALIGNMENT 1039 Y12-9l10.p1k chr10 1189 23 134723 135900 C 1167 96.92 1413 accept 0 ALIGNMENT 947 Y12-9l11.p1k chr13 1144 23 896859 897999 C 1122 96.17 1418 accept 0 ALIGNMENT 1038 Y12-9l11.q1k chr13 35 1248 894755 895967 F 1214 96.29 1277 accept 0 ALIGNMENT 923 Y12-9l12.p1k chr11 1118 24 16153 17261 C 1095 96.53 1354 accept 0 ALIGNMENT 977 Y12-9l12.q1k chr11 34 1235 13389 14587 F 1202 95.76 1279 accept 0 ALIGNMENT 972 Y12-9l14.q1k chr15 36 1212 1076499 1077671 F 1177 95.41 1278 ambiguous_tel 1 ALIGNMENT 965 Y12-9l14.p1k chr15 1164 17 1081228 1082393 C 1148 95.56 1379 ambiguous_tel 1 ALIGNMENT 967 Y12-9l14.q1k chr16 1231 36 13446 14637 C 1196 95.07 1278 ambiguous_tel 0 ALIGNMENT 1005 Y12-9l14.p1k chr13 1164 17 921042 922200 C 1148 96.69 1379 reject_low 2 ALIGNMENT 962 Y12-9l14.p1k chr16 17 1164 8748 9914 F 1148 95.38 1379 ambiguous_tel 0 ALIGNMENT 0 Y12-9l15.p1k chr15 605 62 717228 717227 C 544 0.00 1389 reject_low 2 ALIGNMENT 0 Y12-9l15.p1k chr15 641 62 717264 717263 C 580 0.00 1389 reject_low 1 ALIGNMENT 0 Y12-9l15.p1k chr15 803 700 717207 717206 C 104 0.00 1389 reject_low 1 ALIGNMENT 29 Y12-9l15.p1k chr15 663 606 717170 717227 C 58 84.48 1389 reject_low 2 ALIGNMENT 1013 Y12-9l15.p1k chr15 1223 17 716630 717854 C 1207 95.53 1389 accept 0 ALIGNMENT 29 Y12-9l15.p1k chr15 699 642 717206 717263 C 58 84.48 1389 reject_low 1 ALIGNMENT 961 Y12-9l15.q1k chr15 33 1249 712716 713911 F 1217 95.40 1342 accept 0 ALIGNMENT 0 Y12-9l15.p1k chr15 803 664 717171 717170 C 140 0.00 1389 reject_low 2 ALIGNMENT 0 Y12-9l16.q1k chr03 158 805 303820 303819 F 648 0.00 1285 reject_low 1 ALIGNMENT 996 Y12-9l16.p1k chr14 1187 19 759873 761054 C 1169 96.83 1392 accept 0 ALIGNMENT 988 Y12-9l16.q1k chr14 28 1240 755702 756917 F 1213 95.05 1285 accept 0 ALIGNMENT 61 Y12-9l16.q1k chr03 33 157 303695 303820 F 125 83.20 1285 reject_low 1 ALIGNMENT 983 Y12-9l17.q1k chr07 35 1239 935156 936369 F 1205 95.35 1239 accept 0 ALIGNMENT 978 Y12-9l17.p1k chr07 1159 22 938019 939174 C 1138 96.05 1358 accept 0 ALIGNMENT 984 Y12-9l19.p1k chr16 1103 17 700282 701384 C 1087 97.61 1322 accept 0 ALIGNMENT 775 Y12-9l19.p1k chr02 808 17 477665 478457 C 792 99.49 1322 reject_low 1 ALIGNMENT 918 Y12-9l19.q1k chr16 28 1132 697257 698386 F 1105 96.20 1237 accept 0 ALIGNMENT 998 Y12-9l20.q1k chr07 1247 29 511731 512942 C 1219 95.00 1296 accept 0 ALIGNMENT 1042 Y12-9l20.p1k chr07 13 1273 509053 510324 F 1261 95.88 1378 accept 0 ALIGNMENT 0 Y12-9l21.q1k chr15 307 864 27704 27703 F 558 0.00 1215 reject_low 1 ALIGNMENT 926 Y12-9l21.p1k chr09 1211 23 27428 28610 C 1189 94.28 1316 accept 0 ALIGNMENT 0 Y12-9l21.q1k chr09 307 864 21951 21950 F 558 0.00 1215 accept 0 ALIGNMENT 186 Y12-9l21.q1k chr15 34 306 27431 27704 F 273 90.11 1215 reject_low 1 ALIGNMENT 183 Y12-9l21.q1k chr09 34 306 21678 21951 F 273 89.74 1215 accept 0 ALIGNMENT 1038 Y12-9l22.q1k chr05 34 1210 558644 559814 F 1177 97.11 1210 accept 0 ALIGNMENT 953 Y12-9l22.p1k chr05 1193 21 562216 563404 C 1173 94.71 1304 accept 0 ALIGNMENT 511 Y12-9l23.q1k chr02 933 2 802354 803261 C 932 87.66 1152 accept 0 ALIGNMENT 272 Y12-9l23.p1k chr10 424 1142 17250 17960 F 719 80.53 1345 ambiguous_tel 4 ALIGNMENT 21 Y12-9l23.p1k chr10 533 572 24924 24963 F 40 85.00 1345 reject_low 6 ALIGNMENT 0 Y12-9l23.p1k chr10 573 835 24963 24962 F 263 0.00 1345 reject_low 6 ALIGNMENT 0 Y12-9l23.p1k chr10 62 373 24765 24764 F 312 0.00 1345 reject_low 6 ALIGNMENT 0 Y12-9l23.p1k chr10 62 423 17250 17249 F 362 0.00 1345 ambiguous_tel 4 ALIGNMENT 0 Y12-9l23.p1k chr07 62 282 1067570 1067569 F 221 0.00 1345 ambiguous_tel 1 ALIGNMENT 353 Y12-9l23.p1k chr15 17 1119 22599 23696 F 1103 78.33 1345 ambiguous_tel 2 ALIGNMENT 0 Y12-9l23.q1k chr04 62 176 7362 7361 F 115 0.00 1152 reject_low 5 ALIGNMENT 50 Y12-9l23.q1k chr04 177 539 7362 7716 F 363 73.55 1152 reject_low 5 ALIGNMENT 0 Y12-9l23.p1k chr10 426 532 24817 24923 F 107 0.00 1345 reject_low 6 ALIGNMENT 469 Y12-9l23.p1k chr07 283 1218 1067570 1068495 F 936 84.51 1345 ambiguous_tel 1 ALIGNMENT 26 Y12-9l23.p1k chr10 374 425 24765 24816 F 52 84.62 1345 reject_low 6 ALIGNMENT 326 Y12-9l23.p1k chr09 17 1084 16859 17924 F 1068 77.72 1345 ambiguous_tel 3 ALIGNMENT 0 Y12-9l24.p1k chr14 948 62 632492 632491 C 887 0.00 1319 reject_low 14 ALIGNMENT 0 Y12-9l24.p1k chr07 948 62 931544 931543 C 887 0.00 1319 reject_low 17 ALIGNMENT 164 Y12-9l24.p1k chr14 949 1232 561608 561901 F 284 87.32 1319 reject_low 13 ALIGNMENT 162 Y12-9l24.p1k chr07 948 1232 110858 111152 F 285 87.02 1319 reject_low 15 ALIGNMENT 223 Y12-9l24.p1k chr10 18 253 201701 201936 F 236 100.00 1319|0,3 ambiguous_trans 1 ALIGNMENT 0 Y12-9l24.p1k chr08 251 250 90002 90688 F 0 0.00 1319 ambiguous_trans 2 ALIGNMENT 170 Y12-9l24.p1k chr02 1232 949 35925 36218 C 284 88.03 1319 reject_low 5 ALIGNMENT 0 Y12-9l24.p1k chr15 62 948 703773 703772 F 887 0.00 1319 reject_low 16 ALIGNMENT 0 Y12-9l24.p1k chr16 948 62 443110 443109 C 887 0.00 1319 reject_low 9 ALIGNMENT 0 Y12-9l24.p1k chr02 948 62 36219 36218 C 887 0.00 1319 reject_low 5 ALIGNMENT 170 Y12-9l24.p1k chr09 1232 949 196727 197020 C 284 88.03 1319 reject_low 6 ALIGNMENT 163 Y12-9l24.p1k chr15 949 1198 703773 704029 F 250 89.60 1319 reject_low 16 ALIGNMENT 165 Y12-9l24.p1k chr13 1232 948 808612 808906 C 285 87.37 1319 reject_low 11 ALIGNMENT 0 Y12-9l24.p1k chr07 62 947 110858 110857 F 886 0.00 1319 reject_low 15 ALIGNMENT 223 Y12-9l24.p1k chr08 18 253 89769 90004 F 236 100.00 1319|0,3 ambiguous_trans 2 ALIGNMENT 0 Y12-9l24.p1k chr02 947 62 643855 643854 C 886 0.00 1319 reject_low 10 ALIGNMENT 0 Y12-9l24.p1k chr09 948 62 197021 197020 C 887 0.00 1319 reject_low 6 ALIGNMENT 0 Y12-9l24.p1k chr10 251 250 201934 202620 F 0 0.00 1319 ambiguous_trans 1 ALIGNMENT 0 Y12-9l24.p1k chr16 250 251 437956 438642 C 0 0.00 1319 ambiguous_trans 3 ALIGNMENT 0 Y12-9l24.p1k chr08 62 948 85535 85534 F 887 0.00 1319 reject_low 8 ALIGNMENT 165 Y12-9l24.p1k chr02 1232 948 643560 643854 C 285 87.37 1319 reject_low 10 ALIGNMENT 0 Y12-9l24.p1k chr13 947 62 808907 808906 C 886 0.00 1319 reject_low 11 ALIGNMENT 0 Y12-9l24.p1k chr10 62 946 197462 197461 F 885 0.00 1319 reject_low 4 ALIGNMENT 164 Y12-9l24.p1k chr05 1232 949 354433 354726 C 284 87.32 1319 reject_low 12 ALIGNMENT 137 Y12-9l24.p1k chr14 948 1106 96450 96609 F 159 95.60 1319 reject_low 18 ALIGNMENT 942 Y12-9l24.q1k chr07 28 1159 282932 284055 F 1132 95.58 1183 accept 0 ALIGNMENT 172 Y12-9l24.p1k chr10 947 1232 197462 197757 F 286 88.11 1319 reject_low 4 ALIGNMENT 0 Y12-9l24.p1k chr13 62 948 503770 503769 F 887 0.00 1319 reject_low 7 ALIGNMENT 0 Y12-9l24.p1k chr14 62 948 561608 561607 F 887 0.00 1319 reject_low 13 ALIGNMENT 167 Y12-9l24.p1k chr16 1232 949 442816 443109 C 284 87.68 1319 reject_low 9 ALIGNMENT 803 Y12-9l24.p1k chr10 248 1232 202618 203612 F 985 95.63 1319|3,0 ambiguous_trans 1 ALIGNMENT 223 Y12-9l24.p1k chr16 253 18 438640 438875 C 236 100.00 1319|3,0 ambiguous_trans 3 ALIGNMENT 170 Y12-9l24.p1k chr13 949 1232 503770 504063 F 284 88.03 1319 reject_low 7 ALIGNMENT 797 Y12-9l24.p1k chr08 248 1232 90686 91680 F 985 95.43 1319|3,0 ambiguous_trans 2 ALIGNMENT 167 Y12-9l24.p1k chr08 949 1232 85535 85828 F 284 87.68 1319 reject_low 8 ALIGNMENT 146 Y12-9l24.p1k chr07 1232 949 931250 931543 C 284 85.21 1319 reject_low 17 ALIGNMENT 0 Y12-9l24.p1k chr14 62 947 96450 96449 F 886 0.00 1319 reject_low 18 ALIGNMENT 797 Y12-9l24.p1k chr16 1232 248 436964 437958 C 985 95.43 1319|0,3 ambiguous_trans 3 ALIGNMENT 169 Y12-9l24.p1k chr14 1198 949 632235 632491 C 250 90.40 1319 reject_low 14 ALIGNMENT 0 Y12-9l24.p1k chr05 948 62 354727 354726 C 887 0.00 1319 reject_low 12 ALIGNMENT 1040 Y12-9m01.p1k chr10 19 1252 692105 693348 F 1234 96.35 1397 accept 0 ALIGNMENT 980 Y12-9m01.q1k chr10 1246 8 693959 695177 C 1239 95.16 1304 accept 0 ALIGNMENT 900 Y12-9m02.q1k chr15 1 1024 862793 863809 F 1024 97.27 1250 accept 0 ALIGNMENT 951 Y12-9m02.p1k chr15 1072 21 865634 866699 C 1052 97.81 1316 accept 0 ALIGNMENT 932 Y12-9m03.q1k chr02 20 1135 298277 299409 F 1116 95.61 1322 accept 0 ALIGNMENT 994 Y12-9m04.p1k chr13 1224 17 141291 142504 C 1208 95.53 1386 accept 0 ALIGNMENT 755 Y12-9m04.q1k chr13 5 953 138295 139259 F 949 94.94 1163 accept 0 ALIGNMENT 995 Y12-9m05.p1k chr11 1203 19 640172 641366 C 1185 95.95 1398 accept 0 ALIGNMENT 925 Y12-9m05.q1k chr11 1 1151 635037 636191 F 1151 95.48 1272 accept 0 ALIGNMENT 863 Y12-9m06.p1k chr15 1062 26 447789 448841 C 1037 96.14 1321 accept 0 ALIGNMENT 957 Y12-9m06.q1k chr15 32 1145 443619 444745 F 1114 96.23 1293 accept 0 ALIGNMENT 547 Y12-9m07.q1k chr12 527 1265 489754 490497 F 739 92.15 1396 reject_low 2 ALIGNMENT 887 Y12-9m07.p1k chr12 1029 20 464698 465726 C 1010 97.13 1317 accept 0 ALIGNMENT 0 Y12-9m07.q1k chr12 62 526 489754 489753 F 465 0.00 1396 reject_low 2 ALIGNMENT 887 Y12-9m07.q1k chr12 157 1349 451419 452622 F 1193 93.04 1396 reject_low 1 ALIGNMENT 887 Y12-9m07.p1k chr12 1029 20 455561 456589 C 1010 97.13 1317 reject_low 1 ALIGNMENT 1009 Y12-9m07.q1k chr12 28 1349 460426 461759 F 1322 93.65 1396 accept 0 ALIGNMENT 0 Y12-9m07.q1k chr12 62 156 451419 451418 F 95 0.00 1396 reject_low 1 ALIGNMENT 960 Y12-9m08.q1k chr12 1278 32 693942 695204 C 1247 94.39 1379 accept 0 ALIGNMENT 924 Y12-9m08.p1k chr12 24 1109 690747 691840 F 1086 95.67 1350 accept 0 ALIGNMENT 939 Y12-9m09.p1k chr13 1069 18 759090 760148 C 1052 97.05 1407 accept 0 ALIGNMENT 955 Y12-9m09.q1k chr13 31 1099 755871 756939 F 1069 97.29 1314 accept 0 ALIGNMENT 993 Y12-9m10.q1k chr10 1161 35 433119 434260 C 1127 96.89 1309 accept 0 ALIGNMENT 1026 Y12-9m10.p1k chr10 25 1233 430133 431355 F 1209 95.78 1453 accept 0 ALIGNMENT 998 Y12-9m12.q1k chr13 29 1195 700918 702091 F 1167 96.32 1261 accept 0 ALIGNMENT 862 Y12-9m12.p1k chr13 1024 21 704713 705724 C 1004 96.61 1316 accept 0 ALIGNMENT 38 Y12-9m13.p1k chr13 715 591 357025 357149 C 125 79.20 1424 reject_low 17 ALIGNMENT 0 Y12-9m13.p1k chr02 303 870 265472 265471 F 568 0.00 1424 reject_low 12 ALIGNMENT 41 Y12-9m13.p1k chr07 591 715 931877 932001 F 125 80.00 1424 reject_low 24 ALIGNMENT 41 Y12-9m13.p1k chr08 715 591 543631 543755 C 125 80.00 1424 reject_low 25 ALIGNMENT 0 Y12-9m13.p1k chr11 870 731 457790 457789 C 140 0.00 1424 reject_low 33 ALIGNMENT 0 Y12-9m13.p1k chr02 323 590 221374 226809 F 268 0.00 1424 reject_low 18 ALIGNMENT 0 Y12-9m13.p1k chr13 870 716 357026 357025 C 155 0.00 1424 reject_low 17 ALIGNMENT 41 Y12-9m13.p1k chr13 591 715 184356 184480 F 125 80.00 1424 reject_low 26 ALIGNMENT 0 Y12-9m13.p1k chr11 590 62 517241 517240 C 529 0.00 1424 reject_low 30 ALIGNMENT 0 Y12-9m13.p1k chr13 716 870 184480 184479 F 155 0.00 1424 reject_low 26 ALIGNMENT 0 Y12-9m13.p1k chr08 870 303 543631 543630 C 568 0.00 1424 reject_low 13 ALIGNMENT 256 Y12-9m13.p1k chr08 302 22 543630 543910 C 281 99.29 1424 reject_low 13 ALIGNMENT 256 Y12-9m13.p1k chr02 22 302 259607 259887 F 281 99.29 1424 reject_low 28 ALIGNMENT 667 Y12-9m13.p1k chr12 323 1192 963131 964013 F 870 93.68 1424 accept 0 ALIGNMENT 20 Y12-9m13.p1k chr07 638 713 817314 817387 F 76 80.26 1424 reject_low 36 ALIGNMENT 0 Y12-9m13.p1k chr07 300 870 817387 817386 F 571 0.00 1424 reject_low 34 ALIGNMENT 0 Y12-9m13.p1k chr07 62 590 535401 535400 F 529 0.00 1424 reject_low 29 ALIGNMENT 57 Y12-9m13.p1k chr07 188 299 817278 817387 F 112 86.61 1424 reject_low 34 ALIGNMENT 277 Y12-9m13.p1k chr14 322 22 102192 102492 C 301 99.34 1424 reject_low 16 ALIGNMENT 259 Y12-9m13.p1k chr07 302 22 823000 823280 C 281 99.64 1424 reject_low 22 ALIGNMENT 0 Y12-9m13.p1k chr13 590 62 362732 362731 C 529 0.00 1424 reject_low 31 ALIGNMENT 0 Y12-9m13.p1k chr02 62 603 259775 259774 F 542 0.00 1424 reject_low 27 ALIGNMENT 41 Y12-9m13.p1k chr15 591 715 595007 595131 F 125 80.00 1424 reject_low 37 ALIGNMENT 198 Y12-9m13.p1k chr01 322 22 165827 166132 C 301 91.03 1424 reject_low 35 ALIGNMENT 0 Y12-9m13.p1k chr07 590 303 817544 822999 C 288 0.00 1424 reject_low 22 ALIGNMENT 0 Y12-9m13.p1k chr01 870 324 160239 160238 C 547 0.00 1424 reject_low 15 ALIGNMENT 0 Y12-9m13.p1k chr08 590 62 543756 543755 C 529 0.00 1424 reject_low 25 ALIGNMENT 0 Y12-9m13.p1k chr14 870 731 102199 102198 C 140 0.00 1424 reject_low 20 ALIGNMENT 0 Y12-9m13.p1k chr15 303 870 595132 595131 F 568 0.00 1424 reject_low 10 ALIGNMENT 0 Y12-9m13.p1k chr07 870 716 817420 817419 C 155 0.00 1424 reject_low 22 ALIGNMENT 41 Y12-9m13.p1k chr07 715 591 823001 823125 C 125 80.00 1424 reject_low 23 ALIGNMENT 0 Y12-9m13.p1k chr04 731 870 803224 803223 F 140 0.00 1424 reject_low 32 ALIGNMENT 0 Y12-9m13.p1k chr13 870 716 362608 362607 C 155 0.00 1424 reject_low 31 ALIGNMENT 0 Y12-9m13.p1k chr07 62 187 817278 817277 F 126 0.00 1424 reject_low 34 ALIGNMENT 0 Y12-9m13.p1k chr13 590 323 357150 362585 C 268 0.00 1424 reject_low 17 ALIGNMENT 0 Y12-9m13.p1k chr11 645 62 457874 457873 C 584 0.00 1424 reject_low 33 ALIGNMENT 0 Y12-9m13.p1k chr11 870 323 457784 457783 C 548 0.00 1424 reject_low 8 ALIGNMENT 0 Y12-9m13.p1k chr04 323 870 803230 803229 F 548 0.00 1424 reject_low 11 ALIGNMENT 0 Y12-9m13.p1k chr07 870 303 817419 817418 C 568 0.00 1424 reject_low 9 ALIGNMENT 37 Y12-9m13.p1k chr04 639 730 803133 803224 F 92 82.61 1424 reject_low 32 ALIGNMENT 0 Y12-9m13.p1k chr02 716 870 265471 265470 F 155 0.00 1424 reject_low 28 ALIGNMENT 38 Y12-9m13.p1k chr11 715 591 517116 517240 C 125 79.20 1424 reject_low 30 ALIGNMENT 265 Y12-9m13.p1k chr11 322 22 457783 458083 C 301 98.01 1424 reject_low 8 ALIGNMENT 64 Y12-9m13.p1k chr15 133 238 594654 594759 F 106 89.62 1424 reject_low 37 ALIGNMENT 0 Y12-9m13.p1k chr11 870 323 517096 517095 C 548 0.00 1424 reject_low 2 ALIGNMENT 42 Y12-9m13.p1k chr02 604 715 259775 259886 F 112 81.25 1424 reject_low 27 ALIGNMENT 0 Y12-9m13.p1k chr07 323 870 535546 535545 F 548 0.00 1424 reject_low 4 ALIGNMENT 41 Y12-9m13.p1k chr07 715 591 817419 817543 C 125 80.00 1424 reject_low 22 ALIGNMENT 281 Y12-9m13.p1k chr02 22 323 226655 226956 F 302 99.67 1424 reject_low 1 ALIGNMENT 43 Y12-9m13.p1k chr14 730 591 102198 102337 C 140 79.29 1424 reject_low 20 ALIGNMENT 0 Y12-9m13.p1k chr07 870 716 823002 823001 C 155 0.00 1424 reject_low 23 ALIGNMENT 0 Y12-9m13.p1k chr14 870 323 96611 96610 C 548 0.00 1424 reject_low 5 ALIGNMENT 43 Y12-9m13.p1k chr14 730 591 96616 96755 C 140 79.29 1424 reject_low 16 ALIGNMENT 0 Y12-9m13.p1k chr08 870 716 543632 543631 C 155 0.00 1424 reject_low 25 ALIGNMENT 280 Y12-9m13.p1k chr13 322 22 357004 357304 C 301 99.67 1424 reject_low 3 ALIGNMENT 0 Y12-9m13.p1k chr02 303 590 259888 265346 F 288 0.00 1424 reject_low 28 ALIGNMENT 0 Y12-9m13.p1k chr01 870 731 160246 160245 C 140 0.00 1424 reject_low 35 ALIGNMENT 38 Y12-9m13.p1k chr02 591 715 265347 265471 F 125 79.20 1424 reject_low 28 ALIGNMENT 280 Y12-9m13.p1k chr13 322 22 362586 362886 C 301 99.67 1424 reject_low 17 ALIGNMENT 38 Y12-9m13.p1k chr07 591 715 535401 535525 F 125 79.20 1424 reject_low 29 ALIGNMENT 0 Y12-9m13.p1k chr13 870 323 357005 357004 C 548 0.00 1424 reject_low 3 ALIGNMENT 259 Y12-9m13.p1k chr15 22 302 594852 595132 F 281 99.64 1424 reject_low 10 ALIGNMENT 0 Y12-9m13.p1k chr13 62 590 184356 184355 F 529 0.00 1424 reject_low 26 ALIGNMENT 0 Y12-9m13.p1k chr14 590 62 102338 102337 C 529 0.00 1424 reject_low 20 ALIGNMENT 0 Y12-9m13.p1k chr12 62 322 963131 963130 F 261 0.00 1424 accept 0 ALIGNMENT 38 Y12-9m13.p1k chr13 715 591 362607 362731 C 125 79.20 1424 reject_low 31 ALIGNMENT 259 Y12-9m13.p1k chr07 302 22 817418 817698 C 281 99.64 1424 reject_low 9 ALIGNMENT 0 Y12-9m13.p1k chr07 716 870 535525 535524 F 155 0.00 1424 reject_low 29 ALIGNMENT 0 Y12-9m13.p1k chr07 62 590 931877 931876 F 529 0.00 1424 reject_low 24 ALIGNMENT 254 Y12-9m13.p1k chr04 22 322 802931 803230 F 301 97.01 1424 reject_low 11 ALIGNMENT 0 Y12-9m13.p1k chr07 590 62 823126 823125 C 529 0.00 1424 reject_low 23 ALIGNMENT 0 Y12-9m13.p1k chr02 716 870 226934 226933 F 155 0.00 1424 reject_low 18 ALIGNMENT 0 Y12-9m13.p1k chr01 590 62 165973 165972 C 529 0.00 1424 reject_low 19 ALIGNMENT 0 Y12-9m13.p1k chr11 870 716 517117 517116 C 155 0.00 1424 reject_low 30 ALIGNMENT 0 Y12-9m13.p1k chr04 62 638 803133 803132 F 577 0.00 1424 reject_low 32 ALIGNMENT 0 Y12-9m13.p1k chr14 590 323 96756 102191 C 268 0.00 1424 reject_low 16 ALIGNMENT 0 Y12-9m13.p1k chr07 716 870 932001 932000 F 155 0.00 1424 reject_low 24 ALIGNMENT 0 Y12-9m13.p1k chr07 323 870 932022 932021 F 548 0.00 1424 reject_low 7 ALIGNMENT 0 Y12-9m13.p1k chr01 870 731 165834 165833 C 140 0.00 1424 reject_low 19 ALIGNMENT 0 Y12-9m13.p1k chr16 323 870 560809 560808 F 548 0.00 1424 reject_low 6 ALIGNMENT 43 Y12-9m13.p1k chr01 730 591 165833 165972 C 140 79.29 1424 reject_low 19 ALIGNMENT 0 Y12-9m13.p1k chr16 62 590 560664 560663 F 529 0.00 1424 reject_low 21 ALIGNMENT 280 Y12-9m13.p1k chr11 322 22 517095 517395 C 301 99.67 1424 reject_low 2 ALIGNMENT 0 Y12-9m13.p1k chr14 870 731 96617 96616 C 140 0.00 1424 reject_low 16 ALIGNMENT 256 Y12-9m13.p1k chr02 22 302 265192 265472 F 281 99.29 1424 reject_low 12 ALIGNMENT 0 Y12-9m13.p1k chr02 716 870 259886 259885 F 155 0.00 1424 reject_low 27 ALIGNMENT 0 Y12-9m13.p1k chr15 716 870 595131 595130 F 155 0.00 1424 reject_low 37 ALIGNMENT 256 Y12-9m13.p1k chr13 22 302 184201 184481 F 281 99.29 1424 reject_low 14 ALIGNMENT 38 Y12-9m13.p1k chr02 591 715 226810 226934 F 125 79.20 1424 reject_low 18 ALIGNMENT 199 Y12-9m13.p1k chr01 323 22 160238 160544 C 302 91.06 1424 reject_low 15 ALIGNMENT 0 Y12-9m13.p1k chr16 731 870 560803 560802 F 140 0.00 1424 reject_low 21 ALIGNMENT 277 Y12-9m13.p1k chr14 322 22 96610 96910 C 301 99.34 1424 reject_low 5 ALIGNMENT 0 Y12-9m13.p1k chr15 62 132 594654 594653 F 71 0.00 1424 reject_low 37 ALIGNMENT 267 Y12-9m13.p1k chr02 22 322 221071 221373 F 301 98.34 1424 reject_low 18 ALIGNMENT 0 Y12-9m13.p1k chr13 303 870 184481 184480 F 568 0.00 1424 reject_low 14 ALIGNMENT 0 Y12-9m13.p1k chr01 590 323 160385 165826 C 268 0.00 1424 reject_low 35 ALIGNMENT 1013 Y12-9m13.q1k chr12 1229 31 967577 968784 C 1199 96.33 1273 accept 0 ALIGNMENT 0 Y12-9m13.p1k chr07 714 870 817387 817386 F 157 0.00 1424 reject_low 36 ALIGNMENT 36 Y12-9m13.p1k chr11 730 646 457789 457873 C 85 83.53 1424 reject_low 33 ALIGNMENT 268 Y12-9m13.p1k chr07 22 322 931722 932022 F 301 98.34 1424 reject_low 7 ALIGNMENT 271 Y12-9m13.p1k chr16 22 322 560509 560809 F 301 98.67 1424 reject_low 6 ALIGNMENT 277 Y12-9m13.p1k chr07 22 322 535246 535546 F 301 99.34 1424 reject_low 4 ALIGNMENT 43 Y12-9m13.p1k chr01 730 591 160245 160384 C 140 79.29 1424 reject_low 35 ALIGNMENT 43 Y12-9m13.p1k chr16 591 730 560664 560803 F 140 79.29 1424 reject_low 21 ALIGNMENT 0 Y12-9m13.p1k chr15 239 590 594760 595006 F 352 0.00 1424 reject_low 37 ALIGNMENT 0 Y12-9m13.p1k chr02 324 870 226956 226955 F 547 0.00 1424 reject_low 1 ALIGNMENT 0 Y12-9m13.p1k chr07 62 637 817314 817313 F 576 0.00 1424 reject_low 36 ALIGNMENT 976 Y12-9m15.q1k chr04 4 1203 1064536 1065740 F 1200 95.50 1252 accept 0 ALIGNMENT 1014 Y12-9m15.p1k chr04 1215 21 1069661 1070876 C 1195 96.82 1411 accept 0 ALIGNMENT 984 Y12-9m17.p1k chr05 1191 25 409244 410432 C 1167 96.14 1393 accept 0 ALIGNMENT 993 Y12-9m17.q1k chr05 25 1242 406492 407723 F 1218 95.57 1326 accept 0 ALIGNMENT 987 Y12-9m18.p1k chr05 16 1209 459810 461020 F 1194 95.39 1373 accept 0 ALIGNMENT 1047 Y12-9m18.q1k chr05 1301 30 462943 464206 C 1272 94.81 1366 accept 0 ALIGNMENT 1039 Y12-9m19.q1k chr10 1276 34 634213 635466 C 1243 95.74 1316 accept 0 ALIGNMENT 960 Y12-9m19.p1k chr10 14 1144 632281 633425 F 1131 96.11 1380 accept 0 ALIGNMENT 0 Y12-9m20.q1k chr03 598 62 85119 85118 C 537 0.00 1290 reject_low 20 ALIGNMENT 0 Y12-9m20.q1k chr13 894 496 290798 290797 C 399 0.00 1290 reject_low 5 ALIGNMENT 0 Y12-9m20.q1k chr07 894 493 328587 328586 C 402 0.00 1290 reject_low 14 ALIGNMENT 0 Y12-9m20.q1k chr03 598 62 84603 84602 C 537 0.00 1290 reject_low 23 ALIGNMENT 0 Y12-9m20.q1k chr07 419 62 541927 541926 C 358 0.00 1290 reject_low 13 ALIGNMENT 0 Y12-9m20.q1k chr03 598 62 90746 90745 C 537 0.00 1290 reject_low 21 ALIGNMENT 0 Y12-9m20.q1k chr04 862 894 519598 519597 F 33 0.00 1290 reject_low 19 ALIGNMENT 0 Y12-9m20.q1k chr10 496 894 116008 116007 F 399 0.00 1290 reject_low 7 ALIGNMENT 0 Y12-9m20.q1k chr05 62 418 487324 487323 F 357 0.00 1290 reject_low 12 ALIGNMENT 0 Y12-9m20.q1k chr02 411 62 645243 645242 C 350 0.00 1290 reject_low 11 ALIGNMENT 0 Y12-9m20.q1k chr05 496 894 487400 487399 F 399 0.00 1290 reject_low 12 ALIGNMENT 0 Y12-9m20.q1k chr05 894 494 177098 177097 C 401 0.00 1290 reject_low 6 ALIGNMENT 26 Y12-9m20.q1k chr12 670 598 796992 797066 C 73 80.82 1290 reject_low 24 ALIGNMENT 43 Y12-9m20.q1k chr02 709 598 226819 226933 C 112 83.04 1290 reject_low 17 ALIGNMENT 80 Y12-9m20.q1k chr10 413 495 115926 116008 F 83 98.80 1290 reject_low 7 ALIGNMENT 0 Y12-9m20.q1k chr02 894 710 226820 226819 C 185 0.00 1290 reject_low 17 ALIGNMENT 29 Y12-9m20.q1k chr04 695 599 987003 987100 C 97 81.44 1290 reject_low 22 ALIGNMENT 0 Y12-9m20.q1k chr04 62 584 519321 519320 F 523 0.00 1290 reject_low 19 ALIGNMENT 0 Y12-9m20.q1k chr04 894 671 803135 803134 C 224 0.00 1290 reject_low 16 ALIGNMENT 0 Y12-9m20.q1k chr04 62 597 987166 987165 F 536 0.00 1290 reject_low 9 ALIGNMENT 94 Y12-9m20.q1k chr07 409 575 401519 401686 F 167 86.83 1290 reject_low 1 ALIGNMENT 603 Y12-9m20.q1k chr05 695 35 354727 355385 C 661 97.88 1290|3,0 accept 0 ALIGNMENT 0 Y12-9m20.q1k chr03 894 862 90483 90482 C 33 0.00 1290 reject_low 21 ALIGNMENT 0 Y12-9m20.q1k chr11 710 894 517231 517230 F 185 0.00 1290 reject_low 18 ALIGNMENT 0 Y12-9m20.q1k chr09 418 62 370488 370487 C 357 0.00 1290 reject_low 4 ALIGNMENT 76 Y12-9m20.q1k chr02 493 412 645161 645242 C 82 97.56 1290 reject_low 11 ALIGNMENT 0 Y12-9m20.q1k chr03 574 62 83037 83036 C 513 0.00 1290 reject_low 2 ALIGNMENT 74 Y12-9m20.q1k chr07 493 420 541853 541926 C 74 100.00 1290 reject_low 13 ALIGNMENT 0 Y12-9m20.q1k chr07 62 408 401519 401518 F 347 0.00 1290 reject_low 1 ALIGNMENT 42 Y12-9m20.q1k chr03 585 670 124140 124227 F 86 86.05 1290 reject_low 15 ALIGNMENT 0 Y12-9m20.q1k chr12 894 671 796993 796992 C 224 0.00 1290 reject_low 24 ALIGNMENT 0 Y12-9m20.q1k chr05 411 62 177179 177178 C 350 0.00 1290 reject_low 6 ALIGNMENT 82 Y12-9m20.q1k chr05 493 412 177097 177178 C 82 100.00 1290 reject_low 6 ALIGNMENT 72 Y12-9m20.q1k chr12 492 421 797178 797249 C 72 100.00 1290 reject_low 24 ALIGNMENT 0 Y12-9m20.q1k chr03 894 862 84856 84855 C 33 0.00 1290 reject_low 20 ALIGNMENT 0 Y12-9m20.q1k chr16 493 894 210262 210261 F 402 0.00 1290 reject_low 10 ALIGNMENT 23 Y12-9m20.q1k chr04 585 861 519321 519598 F 277 72.92 1290 reject_low 19 ALIGNMENT 0 Y12-9m20.q1k chr13 408 62 290884 290883 C 347 0.00 1290 reject_low 5 ALIGNMENT 0 Y12-9m20.q1k chr03 62 584 124140 124139 F 523 0.00 1290 reject_low 15 ALIGNMENT 303 Y12-9m20.q1k chr05 1134 690 353896 354356 C 445 91.46 1290|0,3 accept 0 ALIGNMENT 0 Y12-9m20.q1k chr11 62 419 141022 141021 F 358 0.00 1290 reject_low 8 ALIGNMENT 42 Y12-9m20.q1k chr04 670 585 803134 803221 C 86 86.05 1290 reject_low 16 ALIGNMENT 0 Y12-9m20.q1k chr07 419 62 328659 328658 C 358 0.00 1290 reject_low 14 ALIGNMENT 0 Y12-9m20.q1k chr04 598 62 987101 987100 C 537 0.00 1290 reject_low 22 ALIGNMENT 73 Y12-9m20.q1k chr07 492 420 328586 328658 C 73 100.00 1290 reject_low 14 ALIGNMENT 0 Y12-9m20.q1k chr02 597 62 226934 226933 C 536 0.00 1290 reject_low 17 ALIGNMENT 77 Y12-9m20.q1k chr05 419 495 487324 487400 F 77 100.00 1290 reject_low 12 ALIGNMENT 0 Y12-9m20.q1k chr07 576 894 401686 401685 F 319 0.00 1290 reject_low 1 ALIGNMENT 0 Y12-9m20.q1k chr03 499 894 82538 82537 F 396 0.00 1290 reject_low 3 ALIGNMENT 0 Y12-9m20.q1k chr11 499 894 141100 141099 F 396 0.00 1290 reject_low 8 ALIGNMENT 0 Y12-9m20.q1k chr03 62 410 82451 82450 F 349 0.00 1290 reject_low 3 ALIGNMENT 0 Y12-9m20.q1k chr03 894 862 84340 84339 C 33 0.00 1290 reject_low 23 ALIGNMENT 0 Y12-9m20.q1k chr10 62 412 115926 115925 F 351 0.00 1290 reject_low 7 ALIGNMENT 0 Y12-9m20.q1k chr11 62 597 517117 517116 F 536 0.00 1290 reject_low 18 ALIGNMENT 0 Y12-9m20.q1k chr05 692 693 354354 354729 C 0 0.00 1290 accept 0 ALIGNMENT 0 Y12-9m20.q1k chr04 584 62 803222 803221 C 523 0.00 1290 reject_low 16 ALIGNMENT 23 Y12-9m20.q1k chr03 861 599 84855 85118 C 263 73.00 1290 reject_low 20 ALIGNMENT 42 Y12-9m20.q1k chr04 598 861 987166 987432 F 264 75.00 1290 reject_low 9 ALIGNMENT 75 Y12-9m20.q1k chr13 495 409 290797 290883 C 87 95.40 1290 reject_low 5 ALIGNMENT 46 Y12-9m20.q1k chr03 894 575 82712 83036 C 320 74.38 1290 reject_low 2 ALIGNMENT 0 Y12-9m20.q1k chr12 597 493 797067 797177 C 105 0.00 1290 reject_low 24 ALIGNMENT 23 Y12-9m20.q1k chr03 861 599 90482 90745 C 263 73.00 1290 reject_low 21 ALIGNMENT 43 Y12-9m20.q1k chr11 598 709 517117 517231 F 112 83.04 1290 reject_low 18 ALIGNMENT 0 Y12-9m20.q1k chr04 862 894 987432 987431 F 33 0.00 1290 reject_low 9 ALIGNMENT 0 Y12-9m20.q1k chr09 894 500 370408 370407 C 395 0.00 1290 reject_low 4 ALIGNMENT 79 Y12-9m20.q1k chr11 420 498 141022 141100 F 79 100.00 1290 reject_low 8 ALIGNMENT 79 Y12-9m20.q1k chr03 411 498 82451 82538 F 88 96.59 1290 reject_low 3 ALIGNMENT 0 Y12-9m20.q1k chr03 671 894 124227 124226 F 224 0.00 1290 reject_low 15 ALIGNMENT 0 Y12-9m20.q1k chr07 894 494 541854 541853 C 401 0.00 1290 reject_low 13 ALIGNMENT 0 Y12-9m20.q1k chr04 894 696 987004 987003 C 199 0.00 1290 reject_low 22 ALIGNMENT 0 Y12-9m20.q1k chr16 62 409 210180 210179 F 348 0.00 1290 reject_low 10 ALIGNMENT 993 Y12-9m20.p1k chr05 16 1194 352026 353220 F 1179 95.50 1375 accept 0 ALIGNMENT 74 Y12-9m20.q1k chr16 410 492 210180 210262 F 83 96.39 1290 reject_low 10 ALIGNMENT 20 Y12-9m20.q1k chr03 861 599 84339 84602 C 263 72.62 1290 reject_low 23 ALIGNMENT 0 Y12-9m20.q1k chr02 894 494 645162 645161 C 401 0.00 1290 reject_low 11 ALIGNMENT 0 Y12-9m20.q1k chr12 420 62 797250 797249 C 359 0.00 1290 reject_low 24 ALIGNMENT 78 Y12-9m20.q1k chr09 499 419 370407 370487 C 81 98.77 1290 reject_low 4 ALIGNMENT 163 Y12-9m21.p1k chr04 506 282 1308367 1308591 C 225 92.00 1308 reject_low 22 ALIGNMENT 35 Y12-9m21.p1k chr04 506 461 1308535 1308580 C 46 93.48 1308 reject_low 31 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308032 1308031 C 392 0.00 1308 reject_low 13 ALIGNMENT 46 Y12-9m21.p1k chr04 168 18 1307613 1307765 C 151 78.15 1308 reject_low 30 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308452 1308451 C 392 0.00 1308 reject_low 25 ALIGNMENT 0 Y12-9m21.p1k chr04 379 62 1308578 1308577 C 318 0.00 1308 reject_low 25 ALIGNMENT 0 Y12-9m21.p1k chr04 898 339 1307612 1307611 C 560 0.00 1308 reject_low 23 ALIGNMENT 330 Y12-9m21.p1k chr04 506 18 1307905 1308395 C 489 90.39 1308 reject_low 3 ALIGNMENT 98 Y12-9m21.p1k chr04 506 380 1308451 1308577 C 127 93.70 1308 reject_low 25 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308368 1308367 C 392 0.00 1308 reject_low 22 ALIGNMENT 0 Y12-9m21.p1k chr04 169 62 1308578 1308577 C 108 0.00 1308 reject_low 15 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308536 1308535 C 392 0.00 1308 reject_low 31 ALIGNMENT 279 Y12-9m21.p1k chr04 506 18 1307863 1308353 C 489 86.91 1308 reject_low 11 ALIGNMENT 0 Y12-9m21.p1k chr04 460 62 1308581 1308580 C 399 0.00 1308 reject_low 31 ALIGNMENT 199 Y12-9m21.p1k chr04 296 18 1307611 1307891 C 279 91.76 1308 reject_low 18 ALIGNMENT 0 Y12-9m21.p1k chr04 208 62 1308581 1308580 C 147 0.00 1308 reject_low 20 ALIGNMENT 0 Y12-9m21.p1k chr04 898 297 1307612 1307611 C 602 0.00 1308 reject_low 18 ALIGNMENT 276 Y12-9m21.p1k chr04 506 18 1308031 1308521 C 489 86.71 1308 reject_low 13 ALIGNMENT 0 Y12-9m21.p1k chr04 334 62 1308581 1308580 C 273 0.00 1308 reject_low 24 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308284 1308283 C 392 0.00 1308 reject_low 20 ALIGNMENT 276 Y12-9m21.p1k chr04 506 41 1308115 1308580 C 466 87.55 1308 reject_low 14 ALIGNMENT 288 Y12-9m21.p1k chr04 506 18 1307695 1308185 C 489 87.53 1308 reject_low 8 ALIGNMENT 281 Y12-9m21.p1k chr04 464 18 1307611 1308059 C 447 88.81 1308 reject_low 10 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307822 1307821 C 392 0.00 1308 reject_low 2 ALIGNMENT 83 Y12-9m21.p1k chr04 212 18 1307611 1307807 C 195 82.05 1308 reject_low 27 ALIGNMENT 85 Y12-9m21.p1k chr04 128 18 1307611 1307723 C 111 93.69 1308 reject_low 26 ALIGNMENT 0 Y12-9m21.p1k chr04 898 129 1307612 1307611 C 770 0.00 1308 reject_low 26 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308410 1308409 C 392 0.00 1308 reject_low 24 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307780 1307779 C 392 0.00 1308 reject_low 9 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308242 1308241 C 392 0.00 1308 reject_low 15 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307948 1307947 C 392 0.00 1308 reject_low 12 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308200 1308199 C 392 0.00 1308 reject_low 16 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307738 1307737 C 392 0.00 1308 reject_low 1 ALIGNMENT 327 Y12-9m21.p1k chr04 506 18 1308073 1308563 C 489 90.18 1308 reject_low 5 ALIGNMENT 327 Y12-9m21.p1k chr04 506 18 1307989 1308479 C 489 90.18 1308 reject_low 4 ALIGNMENT 328 Y12-9m21.p1k chr04 506 71 1308157 1308592 C 436 92.89 1308 reject_low 6 ALIGNMENT 0 Y12-9m21.p1k chr04 113 62 1308592 1308591 C 52 0.00 1308 reject_low 16 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307906 1307905 C 392 0.00 1308 reject_low 3 ALIGNMENT 0 Y12-9m21.p1k chr04 898 169 1307614 1307613 C 730 0.00 1308 reject_low 30 ALIGNMENT 0 Y12-9m21.p1k chr04 898 379 1307614 1307613 C 520 0.00 1308 reject_low 21 ALIGNMENT 276 Y12-9m21.p1k chr04 506 18 1307947 1308437 C 489 86.71 1308 reject_low 12 ALIGNMENT 304 Y12-9m21.p1k chr04 473 18 1307686 1308143 C 456 90.13 1308 reject_low 7 ALIGNMENT 248 Y12-9m21.p1k chr04 506 170 1308241 1308577 C 337 92.28 1308 reject_low 15 ALIGNMENT 0 Y12-9m21.p1k chr04 898 474 1307687 1307686 C 425 0.00 1308 reject_low 7 ALIGNMENT 79 Y12-9m21.p1k chr04 221 18 1307644 1307849 C 204 80.88 1308 reject_low 28 ALIGNMENT 191 Y12-9m21.p1k chr04 506 209 1308283 1308580 C 298 89.26 1308 reject_low 20 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308074 1308073 C 392 0.00 1308 reject_low 5 ALIGNMENT 0 Y12-9m21.p1k chr04 898 423 1307612 1307611 C 476 0.00 1308 reject_low 19 ALIGNMENT 76 Y12-9m21.p1k chr04 506 419 1308493 1308580 C 88 96.59 1308 reject_low 29 ALIGNMENT 1000 Y12-9m21.q1k chr04 35 1219 1304027 1305206 F 1185 96.03 1225 accept 0 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307696 1307695 C 392 0.00 1308 reject_low 8 ALIGNMENT 189 Y12-9m21.p1k chr04 378 18 1307613 1307975 C 361 85.32 1308 reject_low 21 ALIGNMENT 0 Y12-9m21.p1k chr04 418 62 1308581 1308580 C 357 0.00 1308 reject_low 29 ALIGNMENT 351 Y12-9m21.p1k chr04 506 18 1307737 1308227 C 489 91.82 1308 reject_low 1 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308494 1308493 C 392 0.00 1308 reject_low 29 ALIGNMENT 0 Y12-9m21.p1k chr04 898 465 1307612 1307611 C 434 0.00 1308 reject_low 10 ALIGNMENT 248 Y12-9m21.p1k chr04 506 114 1308199 1308591 C 393 88.80 1308 reject_low 16 ALIGNMENT 0 Y12-9m21.p1k chr04 898 222 1307645 1307644 C 677 0.00 1308 reject_low 28 ALIGNMENT 810 Y12-9m21.p1k chr04 1132 18 1306974 1308101 C 1115 91.84 1308 accept 0 ALIGNMENT 330 Y12-9m21.p1k chr04 506 18 1307821 1308311 C 489 90.39 1308 reject_low 2 ALIGNMENT 0 Y12-9m21.p1k chr04 898 213 1307612 1307611 C 686 0.00 1308 reject_low 27 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307864 1307863 C 392 0.00 1308 reject_low 11 ALIGNMENT 0 Y12-9m21.p1k chr04 238 62 1308593 1308592 C 177 0.00 1308 reject_low 17 ALIGNMENT 141 Y12-9m21.p1k chr04 338 18 1307611 1307933 C 321 82.55 1308 reject_low 23 ALIGNMENT 192 Y12-9m21.p1k chr04 422 32 1307611 1308001 C 391 84.14 1308 reject_low 19 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308326 1308325 C 392 0.00 1308 reject_low 17 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1307990 1307989 C 392 0.00 1308 reject_low 4 ALIGNMENT 0 Y12-9m21.p1k chr04 281 62 1308592 1308591 C 220 0.00 1308 reject_low 22 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308158 1308157 C 392 0.00 1308 reject_low 6 ALIGNMENT 139 Y12-9m21.p1k chr04 506 335 1308409 1308580 C 172 94.77 1308 reject_low 24 ALIGNMENT 0 Y12-9m21.p1k chr04 898 507 1308116 1308115 C 392 0.00 1308 reject_low 14 ALIGNMENT 220 Y12-9m21.p1k chr04 506 239 1308325 1308592 C 268 95.15 1308 reject_low 17 ALIGNMENT 285 Y12-9m21.p1k chr04 506 18 1307779 1308269 C 489 87.32 1308 reject_low 9 ALIGNMENT 384 Y12-9m22.q1k chr04 632 1148 1023471 1023971 F 517 94.20 1238|3,0 accept 0 ALIGNMENT 0 Y12-9m22.q1k chr04 635 634 1023128 1023473 F 0 0.00 1238 accept 0 ALIGNMENT 572 Y12-9m22.q1k chr04 29 637 1022521 1023130 F 609 98.85 1238|0,3 accept 0 ALIGNMENT 1037 Y12-9m22.p1k chr04 1232 21 1027858 1029079 C 1212 96.20 1326 accept 0 ALIGNMENT 877 Y12-9m23.q1k chr07 1025 30 607123 608114 C 996 97.19 1171 accept 0 ALIGNMENT 1032 Y12-9m23.p1k chr07 20 1232 604492 605713 F 1213 96.04 1326 accept 0 ALIGNMENT 21 Y12-9m24.q1k chr07 518 496 394460 394482 C 23 100.00 1196 reject_low 7 ALIGNMENT 0 Y12-9m24.q1k chr13 491 62 354230 354229 C 430 0.00 1196 reject_low 5 ALIGNMENT 0 Y12-9m24.q1k chr09 554 62 105392 105391 C 493 0.00 1196 reject_low 2 ALIGNMENT 26 Y12-9m24.q1k chr04 529 493 604236 604272 C 37 94.59 1196 reject_low 3 ALIGNMENT 0 Y12-9m24.q1k chr11 528 736 561432 561431 F 209 0.00 1196 reject_low 6 ALIGNMENT 0 Y12-9m24.q1k chr08 528 736 365462 365461 F 209 0.00 1196 reject_low 4 ALIGNMENT 23 Y12-9m24.q1k chr08 491 527 365426 365462 F 37 91.89 1196 reject_low 4 ALIGNMENT 0 Y12-9m24.q1k chr07 736 519 394461 394460 C 218 0.00 1196 reject_low 7 ALIGNMENT 0 Y12-9m24.q1k chr13 736 530 354193 354192 C 207 0.00 1196 reject_low 5 ALIGNMENT 0 Y12-9m24.q1k chr16 596 736 650577 650576 F 141 0.00 1196 reject_low 1 ALIGNMENT 0 Y12-9m24.q1k chr08 62 490 365426 365425 F 429 0.00 1196 reject_low 4 ALIGNMENT 21 Y12-9m24.q1k chr10 521 499 138893 138915 C 23 100.00 1196 reject_low 8 ALIGNMENT 894 Y12-9m24.p1k chr05 1044 18 312564 313581 C 1027 96.69 1379 accept 0 ALIGNMENT 20 Y12-9m24.q1k chr09 595 555 105351 105391 C 41 90.24 1196 reject_low 2 ALIGNMENT 0 Y12-9m24.q1k chr10 736 522 138894 138893 C 215 0.00 1196 reject_low 8 ALIGNMENT 0 Y12-9m24.q1k chr07 495 62 394483 394482 C 434 0.00 1196 reject_low 7 ALIGNMENT 22 Y12-9m24.q1k chr11 504 527 561409 561432 F 24 100.00 1196 reject_low 6 ALIGNMENT 0 Y12-9m24.q1k chr10 498 62 138916 138915 C 437 0.00 1196 reject_low 8 ALIGNMENT 0 Y12-9m24.q1k chr04 492 62 604273 604272 C 431 0.00 1196 reject_low 3 ALIGNMENT 0 Y12-9m24.q1k chr11 62 503 561409 561408 F 442 0.00 1196 reject_low 6 ALIGNMENT 21 Y12-9m24.q1k chr13 529 492 354192 354229 C 38 89.47 1196 reject_low 5 ALIGNMENT 0 Y12-9m24.q1k chr09 736 596 105352 105351 C 141 0.00 1196 reject_low 2 ALIGNMENT 762 Y12-9m24.q1k chr05 32 995 308540 309489 F 964 95.02 1196 accept 0 ALIGNMENT 28 Y12-9m24.q1k chr16 551 595 650533 650577 F 45 95.56 1196 reject_low 1 ALIGNMENT 0 Y12-9m24.q1k chr16 62 550 650533 650532 F 489 0.00 1196 reject_low 1 ALIGNMENT 0 Y12-9m24.q1k chr04 736 530 604237 604236 C 207 0.00 1196 reject_low 3 ALIGNMENT 967 Y12-9n01.p1k chr16 20 1150 250404 251551 F 1131 96.46 1331 accept 0 ALIGNMENT 953 Y12-9n01.q1k chr16 1164 29 253718 254867 C 1136 96.04 1297 accept 0 ALIGNMENT 1061 Y12-9n02.p1k chr13 18 1235 28102 29310 F 1218 96.47 1391 accept 0 ALIGNMENT 959 Y12-9n02.q1k chr13 1195 18 31098 32265 C 1178 95.67 1302 accept 0 ALIGNMENT 896 Y12-9n03.q1k chr08 1176 27 148962 150117 C 1150 94.35 1353 accept 0 ALIGNMENT 955 Y12-9n03.p1k chr08 19 1107 144701 145802 F 1089 96.60 1346 accept 0 ALIGNMENT 0 Y12-9n04.q1k chr10 546 771 608773 608772 F 226 0.00 1365 reject_low 2 ALIGNMENT 0 Y12-9n04.q1k chr10 62 229 608458 608457 F 168 0.00 1365 reject_low 2 ALIGNMENT 1051 Y12-9n04.p1k chr04 21 1262 1134079 1135322 F 1242 96.14 1418 accept_chi 0 ALIGNMENT 192 Y12-9n04.q1k chr10 230 545 608458 608773 F 316 87.34 1365 reject_low 2 ALIGNMENT 958 Y12-9n04.q1k chr16 34 1252 654331 655553 F 1219 94.34 1365 accept_chi 1 ALIGNMENT 969 Y12-9n06.q1k chr10 1189 38 149435 150589 C 1152 95.49 1320 accept 0 ALIGNMENT 869 Y12-9n06.p1k chr10 18 1020 146058 147073 F 1003 96.41 1279 accept 0 ALIGNMENT 924 Y12-9n07.q1k chr12 1138 30 460492 461581 C 1109 95.94 1376 manual 1 ALIGNMENT 0 Y12-9n07.q1k chr12 844 689 489755 489754 C 156 0.00 1376 reject_low 3 ALIGNMENT 1004 Y12-9n07.p1k chr07 1209 19 223129 224325 C 1191 96.05 1418 accept_chi 0 ALIGNMENT 882 Y12-9n07.q1k chr12 1031 30 451457 452444 C 1002 97.21 1376 manual 2 ALIGNMENT 637 Y12-9n07.q1k chr12 688 30 489754 490412 C 659 99.09 1376 reject_low 3 ALIGNMENT 944 Y12-9n08.p1k chr04 15 1117 338615 339736 F 1103 96.74 1369 accept 0 ALIGNMENT 1036 Y12-9n08.q1k chr04 1274 35 341839 343090 C 1240 95.48 1379 accept 0 ALIGNMENT 1031 Y12-9n09.q1k chr16 1254 27 833638 834874 C 1228 95.44 1341 accept 0 ALIGNMENT 1013 Y12-9n10.q1k chr08 31 1240 354999 356215 F 1210 95.37 1340 accept_chi 0 ALIGNMENT 989 Y12-9n10.p1k chr11 1168 20 49513 50677 C 1149 96.26 1409 accept_chi 1 ALIGNMENT 900 Y12-9n11.p1k chr07 20 1141 672197 673314 F 1122 94.83 1393 accept 0 ALIGNMENT 851 Y12-9n11.q1k chr07 980 18 674582 675535 C 963 97.51 1342 accept 0 ALIGNMENT 888 Y12-9n13.q1k chr15 1053 32 767495 768532 C 1022 96.48 1269 accept 0 ALIGNMENT 925 Y12-9n13.p1k chr15 23 1103 762955 764055 F 1081 95.93 1360 accept 0 ALIGNMENT 976 Y12-9n14.q1k chr11 35 1183 558376 559540 F 1149 96.17 1293 accept 0 ALIGNMENT 1003 Y12-9n14.p1k chr11 1258 25 561941 563175 C 1234 94.81 1443 accept 0 ALIGNMENT 974 Y12-9n15.q1k chr08 33 1157 278141 279283 F 1125 96.27 1300 accept 0 ALIGNMENT 826 Y12-9n15.p1k chr08 1023 25 281392 282398 C 999 96.40 1308 accept 0 ALIGNMENT 946 Y12-9n16.q1k chr08 1201 34 427864 429047 C 1168 95.03 1316 accept 0 ALIGNMENT 990 Y12-9n17.p1k chr13 18 1202 861620 862821 F 1185 94.94 1373 accept 0 ALIGNMENT 946 Y12-9n17.q1k chr13 1173 36 865313 866465 C 1138 95.52 1331 accept 0 ALIGNMENT 863 Y12-9n18.q1k chr15 1036 37 385415 386428 C 1000 96.70 1264 accept 0 ALIGNMENT 849 Y12-9n18.p1k chr15 32 1029 382606 383618 F 998 96.29 1281 accept 0 ALIGNMENT 104 Y12-9n19.q1k chr11 372 224 431535 431684 C 149 90.60 1334 reject_low 1 ALIGNMENT 0 Y12-9n19.q1k chr11 860 373 431536 431535 C 488 0.00 1334 reject_low 1 ALIGNMENT 914 Y12-9n19.p1k chr08 18 1026 99932 100954 F 1009 97.92 1282 accept 0 ALIGNMENT 1030 Y12-9n19.q1k chr08 1242 39 103382 104592 C 1204 95.76 1334 accept 0 ALIGNMENT 0 Y12-9n19.q1k chr11 223 62 431685 431684 C 162 0.00 1334 reject_low 1 ALIGNMENT 926 Y12-9n20.q1k chr13 1104 35 463697 464781 C 1070 96.54 1287 accept 0 ALIGNMENT 959 Y12-9n20.p1k chr13 23 1210 459448 460648 F 1188 94.87 1376 accept 0 ALIGNMENT 995 Y12-9n21.q1k chr03 1205 28 139797 140969 C 1178 96.26 1219 accept_chi 0 ALIGNMENT 219 Y12-9n21.p1k chr06 252 20 115155 115388 C 233 98.28 1335 reject_low 2 ALIGNMENT 0 Y12-9n21.p1k chr06 933 253 115156 115155 C 681 0.00 1335 reject_low 2 ALIGNMENT 875 Y12-9n21.p1k chr06 1272 215 114099 115162 C 1058 95.37 1335 accept_chi 1 ALIGNMENT 0 Y12-9n21.p1k chr06 214 62 115163 115162 C 153 0.00 1335 accept_chi 1 ALIGNMENT 929 Y12-9n22.p1k chr01 1101 22 103838 104922 C 1080 96.39 1328 accept_chi 1 ALIGNMENT 966 Y12-9n22.q1k chr02 1189 35 103106 104270 C 1155 96.62 1197 accept_chi 0 ALIGNMENT 1030 Y12-9n23.p1k chr15 16 1224 1050181 1051389 F 1209 95.78 1306 accept 0 ALIGNMENT 893 Y12-9n23.q1k chr15 1144 34 1053586 1054705 C 1111 95.41 1147 accept 0 ALIGNMENT 0 Y12-9n24.q1k chrm 855 406 29839 29838 C 450 0.00 1188 reject_low 9 ALIGNMENT 0 Y12-9n24.q1k chrm 855 409 69439 69438 C 447 0.00 1188 reject_low 4 ALIGNMENT 0 Y12-9n24.q1k chrm 391 855 71244 71243 F 465 0.00 1188 reject_low 13 ALIGNMENT 33 Y12-9n24.q1k chrm 407 360 2090 2136 C 48 91.67 1188 reject_low 6 ALIGNMENT 226 Y12-9n24.q1k chrm 434 1031 19403 20003 F 598 86.96 1188 accept 0 ALIGNMENT 0 Y12-9n24.q1k chrm 411 855 31090 31089 F 445 0.00 1188 reject_low 1 ALIGNMENT 32 Y12-9n24.q1k chrm 405 358 80500 80546 C 48 91.67 1188 reject_low 8 ALIGNMENT 130 Y12-9n24.q1k chrm 34 360 19067 19392 F 327 87.16 1188 accept 0 ALIGNMENT 0 Y12-9n24.q1k chrm 357 62 29885 29884 C 296 0.00 1188 reject_low 9 ALIGNMENT 0 Y12-9n24.q1k chrm 855 391 81416 81415 C 465 0.00 1188 reject_low 5 ALIGNMENT 0 Y12-9n24.q1k chrm 855 391 83066 83065 C 465 0.00 1188 reject_low 10 ALIGNMENT 30 Y12-9n24.q1k chrm 390 355 11058 11093 C 36 97.22 1188 reject_low 12 ALIGNMENT 0 Y12-9n24.q1k chrm 855 391 3072 3071 C 465 0.00 1188 reject_low 15 ALIGNMENT 31 Y12-9n24.q1k chrm 390 354 11517 11553 C 37 97.30 1188 reject_low 11 ALIGNMENT 0 Y12-9n24.q1k chrm 359 62 3102 3101 C 298 0.00 1188 reject_low 15 ALIGNMENT 39 Y12-9n24.q1k chrm 341 408 57013 57077 F 68 88.24 1188 reject_low 2 ALIGNMENT 37 Y12-9n24.q1k chrm 408 349 69438 69495 C 60 90.00 1188 reject_low 4 ALIGNMENT 0 Y12-9n24.q1k chrm 62 357 71212 71211 F 296 0.00 1188 reject_low 13 ALIGNMENT 0 Y12-9n24.q1k chrm 348 62 69496 69495 C 287 0.00 1188 reject_low 4 ALIGNMENT 0 Y12-9n24.q1k chrm 62 343 31025 31024 F 282 0.00 1188 reject_low 1 ALIGNMENT 0 Y12-9n24.q1k chrm 855 409 9027 9026 C 447 0.00 1188 reject_low 3 ALIGNMENT 36 Y12-9n24.q1k chrm 390 341 81415 81462 C 50 94.00 1188 reject_low 5 ALIGNMENT 0 Y12-9n24.q1k chrm 343 62 9091 9090 C 282 0.00 1188 reject_low 3 ALIGNMENT 0 Y12-9n24.q1k chrm 359 62 2137 2136 C 298 0.00 1188 reject_low 6 ALIGNMENT 59 Y12-9n24.q1k chrm 344 410 31025 31090 F 67 97.01 1188 reject_low 1 ALIGNMENT 0 Y12-9n24.q1k chrm 354 62 11094 11093 C 293 0.00 1188 reject_low 12 ALIGNMENT 0 Y12-9n24.q1k chrm 855 391 76607 76606 C 465 0.00 1188 reject_low 14 ALIGNMENT 33 Y12-9n24.q1k chrm 390 350 83065 83105 C 41 95.12 1188 reject_low 10 ALIGNMENT 0 Y12-9n24.q1k chrm 391 855 52362 52361 F 465 0.00 1188 reject_low 7 ALIGNMENT 0 Y12-9n24.q1k chrm 357 62 80547 80546 C 296 0.00 1188 reject_low 8 ALIGNMENT 0 Y12-9n24.q1k chrm 855 408 2091 2090 C 448 0.00 1188 reject_low 6 ALIGNMENT 0 Y12-9n24.q1k chrm 855 406 80501 80500 C 450 0.00 1188 reject_low 8 ALIGNMENT 0 Y12-9n24.q1k chrm 340 62 81463 81462 C 279 0.00 1188 reject_low 5 ALIGNMENT 0 Y12-9n24.q1k chrm 62 340 57013 57012 F 279 0.00 1188 reject_low 2 ALIGNMENT 0 Y12-9n24.q1k chrm 357 62 76639 76638 C 296 0.00 1188 reject_low 14 ALIGNMENT 0 Y12-9n24.q1k chrm 361 433 19393 19402 F 73 0.00 1188 accept 0 ALIGNMENT 0 Y12-9n24.q1k chrm 349 62 83106 83105 C 288 0.00 1188 reject_low 10 ALIGNMENT 0 Y12-9n24.q1k chrm 855 391 11518 11517 C 465 0.00 1188 reject_low 11 ALIGNMENT 0 Y12-9n24.q1k chrm 409 855 57077 57076 F 447 0.00 1188 reject_low 2 ALIGNMENT 41 Y12-9n24.q1k chrm 408 344 9026 9090 C 65 89.23 1188 reject_low 3 ALIGNMENT 29 Y12-9n24.q1k chrm 405 358 29838 29884 C 48 89.58 1188 reject_low 9 ALIGNMENT 26 Y12-9n24.q1k chrm 358 390 71212 71244 F 33 100.00 1188 reject_low 13 ALIGNMENT 24 Y12-9n24.q1k chrm 390 360 3071 3101 C 31 100.00 1188 reject_low 15 ALIGNMENT 0 Y12-9n24.q1k chrm 353 62 11554 11553 C 292 0.00 1188 reject_low 11 ALIGNMENT 26 Y12-9n24.q1k chrm 390 358 76606 76638 C 33 100.00 1188 reject_low 14 ALIGNMENT 35 Y12-9n24.q1k chrm 346 390 52319 52362 F 45 95.56 1188 reject_low 7 ALIGNMENT 0 Y12-9n24.q1k chrm 855 391 11059 11058 C 465 0.00 1188 reject_low 12 ALIGNMENT 0 Y12-9n24.q1k chrm 62 345 52319 52318 F 284 0.00 1188 reject_low 7 ALIGNMENT 997 Y12-9o03.p1k chr12 20 1211 449212 450411 F 1192 95.72 1370 accept 0 ALIGNMENT 998 Y12-9o03.q1k chr12 1163 30 452416 453565 C 1134 96.65 1270 accept 0 ALIGNMENT 998 Y12-9o03.q1k chr12 1163 30 461553 462702 C 1134 96.65 1270 reject_low 1 ALIGNMENT 919 Y12-9o04.p1k chr08 1208 19 323700 324884 C 1190 93.95 1402 accept 0 ALIGNMENT 927 Y12-9o04.q1k chr08 11 1181 319359 320517 F 1171 94.36 1301 accept 0 ALIGNMENT 794 Y12-9o06.q1k chr11 991 5 82754 83721 C 987 95.74 1170 accept 0 ALIGNMENT 847 Y12-9o06.p1k chr11 13 1216 78221 79436 F 1204 91.94 1371 accept 0 ALIGNMENT 986 Y12-9o07.q1k chr13 1237 32 876394 877604 C 1206 94.69 1263 accept 0 ALIGNMENT 1034 Y12-9o07.p1k chr13 21 1210 871238 872443 F 1190 96.72 1415 accept 0 ALIGNMENT 973 Y12-9o08.p1k chr09 18 1183 167899 169079 F 1166 95.80 1383 accept 0 ALIGNMENT 984 Y12-9o08.q1k chr09 1202 27 171587 172768 C 1176 95.75 1262 accept 0 ALIGNMENT 929 Y12-9o09.p1k chr03 20 1108 3024 4118 F 1089 95.87 1462 accept 0 ALIGNMENT 484 Y12-9o09.q1k chr11 29 709 662152 662814 F 681 92.22 1360 reject_low 1 ALIGNMENT 491 Y12-9o09.q1k chr03 672 29 6626 7254 C 644 93.79 1360 accept 0 ALIGNMENT 801 Y12-9o10.q1k chr15 1028 38 505344 506324 C 991 95.26 1309 accept 0 ALIGNMENT 986 Y12-9o10.p1k chr15 23 1119 501539 502645 F 1097 97.81 1386 accept 0 ALIGNMENT 989 Y12-9o11.p1k chr16 1135 21 792742 793862 C 1115 97.22 1375 accept 0 ALIGNMENT 1010 Y12-9o11.q1k chr16 40 1218 789706 790887 F 1179 96.18 1224 accept 0 ALIGNMENT 868 Y12-9o13.q1k chr06 1050 29 211372 212379 C 1022 96.58 1264 accept_chi 1 ALIGNMENT 903 Y12-9o13.p1k chr04 1124 21 628234 629342 C 1104 95.29 1417 accept_chi 0 ALIGNMENT 0 Y12-9o14.p1k chr15 278 876 600714 600713 F 599 0.00 1414 reject_low 14 ALIGNMENT 0 Y12-9o14.q1k chr07 808 345 707112 707111 C 464 0.00 1243 reject_low 4 ALIGNMENT 57 Y12-9o14.q1k chr03 105 31 124131 124204 C 75 96.00 1243 reject_low 34 ALIGNMENT 0 Y12-9o14.p1k chr16 298 876 560809 560808 F 579 0.00 1414 reject_low 9 ALIGNMENT 0 Y12-9o14.p1k chr12 876 278 215102 215101 C 599 0.00 1414 reject_low 20 ALIGNMENT 110 Y12-9o14.p1k chr06 22 230 137704 137907 F 209 88.04 1414|0,2 reject_low 53 ALIGNMENT 0 Y12-9o14.p1k chr10 876 118 203890 203889 C 759 0.00 1414 reject_low 52 ALIGNMENT 0 Y12-9o14.q1k chr01 808 107 165827 165826 C 702 0.00 1243 reject_low 30 ALIGNMENT 0 Y12-9o14.q1k chr01 808 113 160233 160232 C 696 0.00 1243 reject_low 25 ALIGNMENT 57 Y12-9o14.q1k chr14 31 105 524990 525063 F 75 96.00 1243 reject_low 35 ALIGNMENT 0 Y12-9o14.p1k chr04 278 876 1096079 1096078 F 599 0.00 1414 reject_low 19 ALIGNMENT 0 Y12-9o14.p1k chr13 876 298 362587 362586 C 579 0.00 1414 reject_low 8 ALIGNMENT 49 Y12-9o14.q1k chr15 31 84 595079 595132 F 54 100.00 1243 reject_low 46 ALIGNMENT 0 Y12-9o14.p1k chr10 300 876 204315 204314 F 577 0.00 1414 reject_low 11 ALIGNMENT 0 Y12-9o14.q1k chr13 93 808 196656 196655 F 716 0.00 1243 reject_low 40 ALIGNMENT 0 Y12-9o14.q1k chr03 808 106 124132 124131 C 703 0.00 1243 reject_low 34 ALIGNMENT 0 Y12-9o14.p1k chr02 286 876 221361 221360 F 591 0.00 1414 reject_low 18 ALIGNMENT 0 Y12-9o14.q1k chr15 85 808 595132 595131 F 724 0.00 1243 reject_low 46 ALIGNMENT 0 Y12-9o14.q1k chr10 93 808 478286 478285 F 716 0.00 1243 reject_low 39 ALIGNMENT 0 Y12-9o14.q1k chr03 808 108 168594 168593 C 701 0.00 1243 reject_low 28 ALIGNMENT 0 Y12-9o14.p1k chr16 876 298 850626 850625 C 579 0.00 1414 reject_low 15 ALIGNMENT 203 Y12-9o14.p1k chr13 22 277 184223 184481 F 256 95.70 1414 reject_low 16 ALIGNMENT 206 Y12-9o14.p1k chr15 22 277 600456 600714 F 256 96.09 1414 reject_low 14 ALIGNMENT 79 Y12-9o14.q1k chr16 352 269 435880 435964 C 84 98.81 1243 reject_low 2 ALIGNMENT 49 Y12-9o14.q1k chr04 84 31 645517 645570 C 54 100.00 1243 reject_low 42 ALIGNMENT 0 Y12-9o14.q1k chr07 808 93 567444 567443 C 716 0.00 1243 reject_low 38 ALIGNMENT 198 Y12-9o14.p1k chr02 22 285 221093 221361 F 264 94.32 1414 reject_low 18 ALIGNMENT 0 Y12-9o14.p1k chr01 876 298 165828 165827 C 579 0.00 1414 reject_low 23 ALIGNMENT 0 Y12-9o14.p1k chr11 876 298 517096 517095 C 579 0.00 1414 reject_low 6 ALIGNMENT 0 Y12-9o14.q1k chr16 268 62 775838 775837 C 207 0.00 1243 reject_low 3 ALIGNMENT 106 Y12-9o14.p1k chr06 22 276 158409 158663 F 255 83.92 1414 reject_low 33 ALIGNMENT 0 Y12-9o14.p1k chr03 876 298 83055 83054 C 579 0.00 1414 reject_low 41 ALIGNMENT 60 Y12-9o14.p1k chr07 162 274 817278 817387 F 113 87.61 1414 reject_low 50 ALIGNMENT 0 Y12-9o14.p1k chr15 278 876 118019 118018 F 599 0.00 1414 reject_low 21 ALIGNMENT 946 Y12-9o14.p1k chr07 22 1131 876011 877127 F 1110 96.58 1414 accept_chi 1 ALIGNMENT 60 Y12-9o14.q1k chr13 106 31 362585 362659 C 76 97.37 1243 reject_low 27 ALIGNMENT 56 Y12-9o14.q1k chr10 31 92 478225 478286 F 62 100.00 1243 reject_low 39 ALIGNMENT 49 Y12-9o14.q1k chr13 84 31 378304 378357 C 54 100.00 1243 reject_low 45 ALIGNMENT 0 Y12-9o14.q1k chr16 268 62 435965 435964 C 207 0.00 1243 reject_low 2 ALIGNMENT 75 Y12-9o14.q1k chr07 344 270 707111 707185 C 75 100.00 1243 reject_low 4 ALIGNMENT 76 Y12-9o14.p1k chr06 22 287 143588 143856 F 266 80.08 1414 reject_low 48 ALIGNMENT 63 Y12-9o14.q1k chr07 31 105 535473 535546 F 75 98.67 1243 reject_low 26 ALIGNMENT 194 Y12-9o14.p1k chr10 22 297 472430 472714 F 276 92.39 1414 reject_low 17 ALIGNMENT 49 Y12-9o14.q1k chr13 84 31 372716 372769 C 54 100.00 1243 reject_low 44 ALIGNMENT 56 Y12-9o14.q1k chr13 31 92 196595 196656 F 62 100.00 1243 reject_low 40 ALIGNMENT 49 Y12-9o14.q1k chr04 84 31 987164 987217 C 54 100.00 1243 reject_low 43 ALIGNMENT 78 Y12-9o14.q1k chr16 351 269 775754 775837 C 83 98.80 1243 reject_low 3 ALIGNMENT 57 Y12-9o14.q1k chr15 105 31 980255 980328 C 75 96.00 1243 reject_low 36 ALIGNMENT 57 Y12-9o14.q1k chr14 31 106 519424 519498 F 76 96.05 1243 reject_low 31 ALIGNMENT 51 Y12-9o14.p1k chr15 131 212 594678 594759 F 82 89.02 1414 reject_low 51 ALIGNMENT 0 Y12-9o14.q1k chr02 105 62 643239 643238 C 44 0.00 1243 accept_chi 0 ALIGNMENT 213 Y12-9o14.p1k chr11 297 22 517095 517373 C 276 94.57 1414 reject_low 6 ALIGNMENT 56 Y12-9o14.q1k chr07 92 31 567443 567504 C 62 100.00 1243 reject_low 38 ALIGNMENT 0 Y12-9o14.p1k chr03 155 62 83196 83195 C 94 0.00 1414 reject_low 41 ALIGNMENT 91 Y12-9o14.p1k chr03 297 156 83054 83195 C 142 90.14 1414 reject_low 41 ALIGNMENT 0 Y12-9o14.q1k chr04 808 85 645518 645517 C 724 0.00 1243 reject_low 42 ALIGNMENT 0 Y12-9o14.q1k chr15 808 106 980256 980255 C 703 0.00 1243 reject_low 36 ALIGNMENT 58 Y12-9o14.q1k chr03 107 31 168593 168668 C 77 96.10 1243 reject_low 28 ALIGNMENT 165 Y12-9o14.p1k chr01 297 22 165827 166110 C 276 89.13 1414 reject_low 23 ALIGNMENT 0 Y12-9o14.p1k chr06 229 228 137906 143869 F 0 0.00 1414 reject_low 53 ALIGNMENT 209 Y12-9o14.p1k chr07 22 291 535268 535540 F 270 94.81 1414 reject_low 10 ALIGNMENT 0 Y12-9o14.q1k chr13 808 107 362586 362585 C 702 0.00 1243 reject_low 27 ALIGNMENT 0 Y12-9o14.p1k chr06 300 876 143939 143938 F 577 0.00 1414 reject_low 53 ALIGNMENT 0 Y12-9o14.p1k chr01 876 301 160237 160236 C 576 0.00 1414 reject_low 22 ALIGNMENT 54 Y12-9o14.q1k chr16 31 105 560736 560809 F 75 94.67 1243 reject_low 37 ALIGNMENT 57 Y12-9o14.q1k chr01 106 31 165826 165900 C 76 96.05 1243 reject_low 30 ALIGNMENT 0 Y12-9o14.p1k chr06 288 876 138229 138228 F 589 0.00 1414 reject_low 47 ALIGNMENT 0 Y12-9o14.q1k chr07 269 62 707186 707185 C 208 0.00 1243 reject_low 4 ALIGNMENT 0 Y12-9o14.p1k chr03 298 876 83035 83034 F 579 0.00 1414 reject_low 24 ALIGNMENT 210 Y12-9o14.p1k chr16 22 297 560531 560809 F 276 94.20 1414 reject_low 9 ALIGNMENT 0 Y12-9o14.q1k chr16 107 808 56789 56788 F 702 0.00 1243 reject_low 32 ALIGNMENT 184 Y12-9o14.p1k chr12 277 22 215101 215365 C 256 93.36 1414 reject_low 20 ALIGNMENT 0 Y12-9o14.q1k chr14 106 808 525063 525062 F 703 0.00 1243 reject_low 35 ALIGNMENT 43 Y12-9o14.p1k chr10 117 22 203889 203982 C 96 85.42 1414 reject_low 52 ALIGNMENT 199 Y12-9o14.p1k chr10 23 299 204036 204315 F 277 92.78 1414 reject_low 11 ALIGNMENT 0 Y12-9o14.q1k chr07 106 808 535546 535545 F 703 0.00 1243 reject_low 26 ALIGNMENT 0 Y12-9o14.p1k chr14 876 298 102193 102192 C 579 0.00 1414 reject_low 5 ALIGNMENT 0 Y12-9o14.q1k chr04 82 808 987100 987099 F 727 0.00 1243 reject_low 49 ALIGNMENT 184 Y12-9o14.p1k chr04 22 277 1095815 1096079 F 256 93.36 1414 reject_low 19 ALIGNMENT 197 Y12-9o14.p1k chr16 297 22 850625 850909 C 276 92.75 1414 reject_low 15 ALIGNMENT 213 Y12-9o14.p1k chr13 297 22 362586 362864 C 276 94.57 1414 reject_low 8 ALIGNMENT 60 Y12-9o14.q1k chr13 105 31 357004 357077 C 75 97.33 1243 reject_low 29 ALIGNMENT 0 Y12-9o14.p1k chr07 275 876 817387 817386 F 602 0.00 1414 reject_low 50 ALIGNMENT 0 Y12-9o14.p1k chr15 62 130 594678 594677 F 69 0.00 1414 reject_low 51 ALIGNMENT 0 Y12-9o14.p1k chr07 876 278 817419 817418 C 599 0.00 1414 reject_low 12 ALIGNMENT 0 Y12-9o14.p1k chr07 292 876 535540 535539 F 585 0.00 1414 reject_low 10 ALIGNMENT 0 Y12-9o14.p1k chr07 62 161 817278 817277 F 100 0.00 1414 reject_low 50 ALIGNMENT 0 Y12-9o14.p1k chr13 278 876 184481 184480 F 599 0.00 1414 reject_low 16 ALIGNMENT 0 Y12-9o14.q1k chr13 808 106 357005 357004 C 703 0.00 1243 reject_low 29 ALIGNMENT 0 Y12-9o14.p1k chr15 213 876 594759 594758 F 664 0.00 1414 reject_low 51 ALIGNMENT 46 Y12-9o14.p1k chr06 226 299 143867 143939 F 74 90.54 1414|3,0 reject_low 53 ALIGNMENT 0 Y12-9o14.q1k chr16 808 352 775755 775754 C 457 0.00 1243 reject_low 3 ALIGNMENT 0 Y12-9o14.p1k chr06 277 876 158663 158662 F 600 0.00 1414 reject_low 33 ALIGNMENT 0 Y12-9o14.q1k chr16 106 808 560809 560808 F 703 0.00 1243 reject_low 37 ALIGNMENT 213 Y12-9o14.p1k chr13 297 22 357004 357282 C 276 94.57 1414 reject_low 7 ALIGNMENT 34 Y12-9o14.q1k chr04 36 81 987056 987100 F 46 95.65 1243 reject_low 49 ALIGNMENT 57 Y12-9o14.q1k chr16 31 106 56715 56789 F 76 96.05 1243 reject_low 32 ALIGNMENT 165 Y12-9o14.p1k chr03 22 297 82752 83035 F 276 89.13 1414 reject_low 24 ALIGNMENT 0 Y12-9o14.p1k chr06 288 876 143856 143855 F 589 0.00 1414 reject_low 48 ALIGNMENT 0 Y12-9o14.q1k chr13 808 85 378305 378304 C 724 0.00 1243 reject_low 45 ALIGNMENT 76 Y12-9o14.p1k chr06 22 287 137961 138229 F 266 80.08 1414 reject_low 47 ALIGNMENT 881 Y12-9o14.q1k chr02 1160 106 642175 643238 C 1055 95.64 1243 accept_chi 0 ALIGNMENT 56 Y12-9o14.q1k chr01 112 31 160232 160312 C 82 93.90 1243 reject_low 25 ALIGNMENT 0 Y12-9o14.q1k chr14 107 808 519498 519497 F 702 0.00 1243 reject_low 31 ALIGNMENT 167 Y12-9o14.p1k chr01 300 22 160236 160522 C 279 89.25 1414 reject_low 22 ALIGNMENT 206 Y12-9o14.p1k chr15 22 277 594874 595132 F 256 96.09 1414 reject_low 13 ALIGNMENT 206 Y12-9o14.p1k chr07 277 22 817418 817676 C 256 96.09 1414 reject_low 12 ALIGNMENT 0 Y12-9o14.p1k chr13 876 298 357005 357004 C 579 0.00 1414 reject_low 7 ALIGNMENT 0 Y12-9o14.q1k chr13 808 85 372717 372716 C 724 0.00 1243 reject_low 44 ALIGNMENT 0 Y12-9o14.q1k chr16 808 353 435881 435880 C 456 0.00 1243 reject_low 2 ALIGNMENT 0 Y12-9o14.p1k chr15 278 876 595132 595131 F 599 0.00 1414 reject_low 13 ALIGNMENT 0 Y12-9o14.q1k chr04 808 85 987165 987164 C 724 0.00 1243 reject_low 43 ALIGNMENT 184 Y12-9o14.p1k chr15 22 277 117755 118019 F 256 93.36 1414 reject_low 21 ALIGNMENT 216 Y12-9o14.p1k chr14 297 22 102192 102470 C 276 94.93 1414 reject_low 5 ALIGNMENT 0 Y12-9o14.p1k chr10 298 876 472714 472713 F 579 0.00 1414 reject_low 17 ALIGNMENT 632 Y12-9o16.q1k chr10 805 26 334446 335213 C 780 95.51 1351 accept 0 ALIGNMENT 945 Y12-9o16.p1k chr10 19 1129 330151 331266 F 1111 96.40 1406 accept 0 ALIGNMENT 69 Y12-9o17.q1k chr05 84 254 568848 569017 F 171 83.04 1243 reject_low 5 ALIGNMENT 0 Y12-9o17.q1k chr08 87 62 8151 8150 C 26 0.00 1243 reject_low 4 ALIGNMENT 0 Y12-9o17.q1k chr11 257 878 665306 665305 F 622 0.00 1243 reject_low 6 ALIGNMENT 0 Y12-9o17.q1k chr05 62 83 568848 568847 F 22 0.00 1243 reject_low 5 ALIGNMENT 1061 Y12-9o17.q1k chr05 1232 36 565718 566915 C 1197 96.74 1243 accept 0 ALIGNMENT 0 Y12-9o17.q1k chr03 257 878 4322 4321 F 622 0.00 1243 reject_low 2 ALIGNMENT 0 Y12-9o17.q1k chr05 255 878 569017 569016 F 624 0.00 1243 reject_low 5 ALIGNMENT 21 Y12-9o17.q1k chr03 224 256 292131 292163 F 33 90.91 1243 reject_low 7 ALIGNMENT 0 Y12-9o17.q1k chr07 257 878 1079 1078 F 622 0.00 1243 reject_low 3 ALIGNMENT 151 Y12-9o17.q1k chr03 36 256 4103 4322 F 221 91.86 1243 reject_low 2 ALIGNMENT 21 Y12-9o17.q1k chr11 36 63 665098 665125 F 28 96.43 1243 reject_low 6 ALIGNMENT 75 Y12-9o17.q1k chr08 256 88 7993 8150 C 169 86.39 1243 reject_low 4 ALIGNMENT 998 Y12-9o17.p1k chr05 30 1247 561376 562605 F 1218 95.24 1405 accept 0 ALIGNMENT 173 Y12-9o17.q1k chr03 36 257 1209 1430 F 222 94.59 1243 reject_low 1 ALIGNMENT 0 Y12-9o17.q1k chr03 215 223 292113 292130 F 9 0.00 1243 reject_low 7 ALIGNMENT 0 Y12-9o17.q1k chr03 62 83 291983 291982 F 22 0.00 1243 reject_low 7 ALIGNMENT 130 Y12-9o17.q1k chr11 64 256 665115 665306 F 193 91.71 1243 reject_low 6 ALIGNMENT 0 Y12-9o17.q1k chr11 64 63 665126 665114 F 0 0.00 1243 reject_low 6 ALIGNMENT 0 Y12-9o17.q1k chr03 257 878 292163 292162 F 622 0.00 1243 reject_low 7 ALIGNMENT 0 Y12-9o17.q1k chr03 258 878 1430 1429 F 621 0.00 1243 reject_low 1 ALIGNMENT 100 Y12-9o17.q1k chr03 84 214 291983 292112 F 131 95.42 1243 reject_low 7 ALIGNMENT 126 Y12-9o17.q1k chr07 71 256 895 1079 F 186 91.94 1243 reject_low 3 ALIGNMENT 0 Y12-9o17.q1k chr08 878 257 7994 7993 C 622 0.00 1243 reject_low 4 ALIGNMENT 908 Y12-9o18.p1k chr12 15 1106 48680 49786 F 1092 95.79 1365 accept 0 ALIGNMENT 776 Y12-9o18.q1k chr12 945 33 51989 52903 C 913 96.28 1246 accept 0 ALIGNMENT 997 Y12-9o19.q1k chr13 34 1217 743571 744745 F 1184 95.78 1224 accept 0 ALIGNMENT 951 Y12-9o19.p1k chr13 1141 21 745448 746592 C 1121 96.61 1357 accept 0 ALIGNMENT 996 Y12-9o20.q1k chr12 1189 29 456974 458130 C 1161 96.38 1216 accept 0 ALIGNMENT 1068 Y12-9o20.p1k chr12 20 1243 452933 454169 F 1224 96.32 1394 accept 0 ALIGNMENT 996 Y12-9o20.q1k chr12 1189 29 466111 467267 C 1161 96.38 1216 reject_low 1 ALIGNMENT 1067 Y12-9o20.p1k chr12 20 1212 462070 463275 F 1193 97.07 1394 reject_low 1 ALIGNMENT 966 Y12-9o21.p1k chr10 20 1104 561485 562588 F 1085 97.42 1306 accept 0 ALIGNMENT 972 Y12-9o21.q1k chr10 1172 28 564517 565670 C 1145 95.55 1176 accept 0 ALIGNMENT 991 Y12-9o22.p1k chr04 23 1230 622861 624068 F 1208 95.20 1343 accept 0 ALIGNMENT 875 Y12-9o22.q1k chr04 1076 12 626907 627958 C 1065 95.77 1203 accept 0 ALIGNMENT 917 Y12-9o23.q1k chr04 32 1065 219629 220653 F 1034 97.29 1177 accept 0 ALIGNMENT 24 Y12-9o23.q1k chr04 652 582 370102 370172 C 71 78.87 1177 reject_low 2 ALIGNMENT 0 Y12-9o23.q1k chr04 581 62 370173 370172 C 520 0.00 1177 reject_low 2 ALIGNMENT 654 Y12-9o23.q1k chr04 67 983 123868 124782 F 917 91.06 1177 reject_low 1 ALIGNMENT 26 Y12-9o23.q1k chr04 826 795 369925 369956 C 32 93.75 1177 reject_low 2 ALIGNMENT 0 Y12-9o23.q1k chr04 794 653 369957 370101 C 142 0.00 1177 reject_low 2 ALIGNMENT 980 Y12-9o23.p1k chr04 1221 21 221598 222782 C 1201 95.84 1311 accept 0 ALIGNMENT 777 Y12-9o24.q1k chr04 977 31 291812 292744 C 947 96.41 1225 accept 0 ALIGNMENT 997 Y12-9o24.p1k chr04 28 1195 288455 289623 F 1168 96.06 1297 accept 0 ALIGNMENT 834 Y12-9p01.p1k chr08 20 1007 25767 26744 F 988 96.26 1367 accept 0 ALIGNMENT 832 Y12-9p01.q1k chr08 953 2 28366 29305 C 952 97.69 1210 accept 0 ALIGNMENT 989 Y12-9p02.p1k chr07 1116 23 355726 356831 C 1094 97.71 1304 accept_chi 1 ALIGNMENT 1020 Y12-9p02.q1k chr16 1187 27 914801 915969 C 1161 96.99 1197 accept_chi 0 ALIGNMENT 966 Y12-9p03.q1k chr15 1246 35 922051 923249 C 1212 94.97 1340 accept 0 ALIGNMENT 921 Y12-9p03.p1k chr15 13 1143 918010 919123 F 1131 95.67 1409 accept 0 ALIGNMENT 734 Y12-9p04.q1k chr09 12 971 38213 39167 F 960 93.33 1278 accept 0 ALIGNMENT 924 Y12-9p05.q1k chr12 1125 26 1039938 1041024 C 1100 96.55 1255 accept 0 ALIGNMENT 1030 Y12-9p05.p1k chr12 23 1192 1036183 1037367 F 1170 97.01 1370 accept 0 ALIGNMENT 948 Y12-9p06.p1k chr13 1101 18 525938 527030 C 1084 97.23 1323 accept 0 ALIGNMENT 1014 Y12-9p06.q1k chr13 26 1211 522239 523428 F 1186 96.29 1223 accept 0 ALIGNMENT 878 Y12-9p07.p1k chr11 1187 25 49188 50351 C 1163 93.72 1406 accept 0 ALIGNMENT 869 Y12-9p07.q1k chr11 7 1145 45938 47066 F 1139 93.77 1241 accept 0 ALIGNMENT 887 Y12-9p09.p1k chr07 1197 21 241501 242675 C 1177 93.54 1445 accept 0 ALIGNMENT 437 Y12-9p09.q1k chr07 12 533 236564 237075 F 522 96.55 1417 accept 0 ALIGNMENT 642 Y12-9p11.q1k chr05 889 31 241433 242295 C 859 93.60 1338 accept 0 ALIGNMENT 997 Y12-9p11.p1k chr05 25 1183 236805 237975 F 1159 96.46 1398 accept 0 ALIGNMENT 1028 Y12-9p13.p1k chr11 1281 20 483562 484837 C 1262 95.48 1440 accept 0 ALIGNMENT 1002 Y12-9p13.q1k chr11 32 1255 480212 481435 F 1224 95.10 1273 accept 0 ALIGNMENT 981 Y12-9p14.p1k chr16 1124 21 355123 356240 C 1104 97.28 1385 accept 0 ALIGNMENT 935 Y12-9p14.q1k chr16 19 1146 351819 352934 F 1128 96.10 1271 accept 0 ALIGNMENT 501 Y12-9p15.q1k chr11 654 19 66962 67596 C 636 93.87 1383 accept 0 ALIGNMENT 418 Y12-9p15.p1k chr11 351 1237 63945 64815 F 887 86.47 1436 reject_low 1 ALIGNMENT 590 Y12-9p15.p1k chr11 22 999 63617 64577 F 978 90.08 1436 accept 0 ALIGNMENT 900 Y12-9p16.p1k chr13 1123 25 395539 396626 C 1099 95.00 1440 accept 0 ALIGNMENT 516 Y12-9p16.q1k chr13 13 731 391454 392167 F 719 92.07 1364 accept 0 ALIGNMENT 826 Y12-9p18.q1k chr04 33 1028 852409 853404 F 996 95.88 1261 accept_chi 1 ALIGNMENT 976 Y12-9p18.p1k chr04 1190 10 398065 399256 C 1181 95.51 1372 accept_chi 0 ALIGNMENT 824 Y12-9p19.q1k chr02 1069 12 119460 120502 C 1058 94.99 1250 accept 0 ALIGNMENT 151 Y12-9p19.p1k chr02 20 707 116367 117028 F 688 77.03 1466 accept 0 ALIGNMENT 987 Y12-9p20.p1k chr01 1165 25 7869 9023 C 1141 97.02 1355 accept 0 ALIGNMENT 853 Y12-9p20.q1k chr01 30 1038 5140 6143 F 1009 96.63 1240 accept 0 ALIGNMENT 917 Y12-9p21.q1k chr16 29 1025 820184 821172 F 997 98.80 1249 accept 0 ALIGNMENT 921 Y12-9p21.p1k chr16 1151 20 824700 825828 C 1132 95.14 1333 accept 0 ALIGNMENT 874 Y12-9p22.q1k chr16 1058 28 115431 116448 C 1031 96.70 1220 accept 0 ALIGNMENT 993 Y12-9p22.p1k chr16 19 1196 110761 111928 F 1178 95.93 1360 accept 0 ALIGNMENT 0 Y12-9p23.p1k chr12 832 122 490544 490543 C 711 0.00 1370 reject_low 3 ALIGNMENT 876 Y12-9p23.p1k chr12 1111 35 461458 462506 C 1077 95.64 1370 accept 0 ALIGNMENT 114 Y12-9p23.p1k chr12 1111 833 490289 490543 C 279 86.02 1370 reject_low 3 ALIGNMENT 876 Y12-9p23.p1k chr12 1111 35 452321 453369 C 1077 95.64 1370 reject_low 2 ALIGNMENT 845 Y12-9p23.q1k chr12 30 1034 467214 468206 F 1005 96.42 1204 reject_low 1 ALIGNMENT 845 Y12-9p23.q1k chr12 30 1034 458077 459069 F 1005 96.42 1204 accept 0 ALIGNMENT 0 Y12-9p24.p1k chr01 364 448 122547 122631 F 85 0.00 1274 reject_low 1 ALIGNMENT 29 Y12-9p24.p1k chr01 449 525 122632 122708 F 77 81.82 1274 reject_low 1 ALIGNMENT 0 Y12-9p24.p1k chr01 62 181 122365 122364 F 120 0.00 1274 reject_low 1 ALIGNMENT 0 Y12-9p24.p1k chr01 526 830 122708 122707 F 305 0.00 1274 reject_low 1 ALIGNMENT 991 Y12-9p24.p1k chr15 23 1222 244808 246019 F 1200 95.67 1274 accept 0 ALIGNMENT 878 Y12-9p24.q1k chr15 978 28 248310 249253 C 951 98.63 1233 accept 0 ALIGNMENT 24 Y12-9p24.p1k chr01 182 363 122365 122546 F 182 72.53 1274 reject_low 1