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      Whole Exome Capture Files

produced by Felix Kokocinski, Wellcome Trust
Sanger Institute, for the "exome group".
(c) April 2009
contact: fsk@sanger.ac.uk
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exome_B_NCBI36.gff
  coordiantes of exome in gff format.
  created from HAVANA & ENSEMBL data on 02.04.2009
  genome assembly NCBI36
  compressed with gzip
  example line:
  chr6    EXOME   CODING_REGION_OF_EXON   31648489        31648607        .       +       .       ID=cluster_6_1848

exome_B_NCBI36.bed
  coordiantes of exome in bed format.
  example line:
  chr1	20219	20376

exome_B_NCBI36_annotated.gff
  coordiantes of exome with HAVANA & ENSEMBL gene and transcript ids () in gff-like format.
  compressed with gzip
  example line:
  chr6    EXOME   CODING_REGION_OF_EXON   31648489        31648607        .       +       .       ID=cluster_6_1848       OTTHUMG00000031135, ENSG00000204496   OTTHUMT00000259097, ENST00000376133, ENST00000396143, OTTHUMT00000076237

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updated files, December 2009
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exome_B_GRCh37.gff.gz
  previous genomic locations transferred to new genome assembly GRCh37 using the Ensembl mapping.
  compressed with gzip

exome_B_GRCh37_annotated.gff.gz
  previous genomic locations on GRCh37 annotated with the 9th gff column having:

  (internal) cluster-ID;
  evidence for this exon (ie. GenBank IDs, etc);
  information on transcript(s) the exon belong to  (Ensembl transcript id | Ensembl gene id | gene name)

  example line:
  chrX    EXOME   coding_region_of_exon   153927559       153927798       .       +       .       ID=cluster_X_7147;evidence=AK126283.1,BF900282.1,Q8VH53.1,AL832051.1,AY057989.1,Q8BSM5.1,Q8WWW8.1;transcript=ENST00000369575|ENSG00000160219|GAB3;transcript=ENST00000369568|ENSG00000160219|GAB3;transcript=ENST00000424127|ENSG00000160219|GAB3;transcript=ENST00000496390|ENSG00000160219|GAB3