Methods
add_alignment
add_alignments
alignments
assign_properties
chromosome
cigar_string
display
end
filename
generate_cigar_string
generate_cigar_strings
get_hsp_by_ident
hsp
hsp_id
id
ident
identities
is_empty_line
job
job_id
length
limits_for_alignment_string
new
(EnsEMBL::Web::Blast)
new
(EnsEMBL::Web::Blast::Parser)
new
(EnsEMBL::Web::Blast::Result)
new
(EnsEMBL::Web::Blast::Result::Alignment)
new
(EnsEMBL::Web::Blast::Result::HSP)
new_from_database
(EnsEMBL::Web::Blast::Result::Alignment)
new_from_database
(EnsEMBL::Web::Blast::Result::HSP)
new_from_line
param
params
parse
positives
prepare_cigar_string
probability
query_end
query_start
reading_frame
results
score
sequence_for_alignment_string
start
sub_cigar_string
subject_end
subject_start
test_method
type
warnings