assemble_direct
-io io_handle:integer
-files filenames:strings
?-output_mode mode:integer(0)?
?-max_pmismatch percentage:float(-1)?
This performs the gap4 directed assembly function. It takes a list of Experiment File filenames and processes these according to their content. The Experiment Files should contain AP lines to govern their positions in the assembly.
The function returns a list of failed files separated by newlines.
-io
io_handle
open_db
call.
-files
filenames
-output_mode
mode
-max_pmismatch
percentage