##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 8016-7-8.h.sapiens.aligned.bam File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8250800 Filtered Sequences 0 Sequence length 1-100 %GC 46 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.815107262326077 24.0 24.0 32.0 24.0 32.0 2 31.002570134803296 31.0 31.0 32.0 30.0 32.0 3 32.68749795467883 34.0 33.0 34.0 30.0 34.0 4 34.25129900619814 35.0 35.0 35.0 29.0 37.0 5 35.37549575603022 36.0 36.0 36.0 34.0 36.0 6 35.55232773207022 36.0 36.0 37.0 34.0 37.0 7 35.90539214818826 36.0 35.0 37.0 33.0 38.0 8 36.24911698959174 37.0 36.0 37.0 34.0 38.0 9 36.48656397593882 37.0 37.0 38.0 35.0 38.0 10-14 36.75666813009617 37.6 36.8 38.0 34.4 38.2 15-19 37.256023832342336 38.0 37.0 38.8 34.6 39.2 20-24 36.881875372608405 37.8 36.6 38.2 35.0 38.6 25-29 37.00493146734986 38.0 36.8 38.6 34.2 39.0 30-34 37.00054768769983 37.8 36.8 38.6 35.4 39.2 35-39 36.908008832789115 38.0 37.2 38.4 33.6 39.2 40-44 36.78037783050761 38.0 36.8 38.2 33.6 39.2 45-49 36.644197166940785 37.2 37.0 38.0 33.8 39.2 50-54 36.89169916802256 38.2 37.0 38.2 34.0 39.0 55-59 36.941581074085114 38.0 37.2 38.4 33.0 38.8 60-64 36.43625948805593 37.4 36.4 38.0 33.4 38.4 65-69 36.52641931510225 37.8 36.4 38.4 33.8 38.8 70-74 36.5762901598964 37.6 36.8 38.6 34.2 38.6 75-79 36.23991829642914 37.2 36.6 37.8 34.2 38.6 80-84 36.485345493696784 37.8 36.4 38.0 33.4 38.8 85-89 36.40550052629969 38.0 36.2 38.6 33.0 39.2 90-94 36.19989516575928 37.6 36.4 38.4 33.2 39.6 95-99 35.8952115189267 37.2 36.2 38.0 32.4 38.6 100 34.88299827782511 37.0 35.0 37.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 1 1.0 2 0.0 3 1.0 4 0.0 5 44.0 6 219.0 7 398.0 8 524.0 9 893.0 10 828.0 11 1074.0 12 1414.0 13 1555.0 14 2083.0 15 2427.0 16 3010.0 17 3637.0 18 4596.0 19 4770.0 20 4714.0 21 5622.0 22 6895.0 23 9001.0 24 11858.0 25 16229.0 26 22180.0 27 30421.0 28 41526.0 29 55753.0 30 73732.0 31 99447.0 32 133106.0 33 183249.0 34 275169.0 35 533873.0 36 1769116.0 37 4949201.0 38 2234.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.349357472322318 15.755474880473713 21.072686508113094 39.822481139090876 2 19.785232309024202 46.732700919238106 17.149026056595314 16.333040715142374 3 22.056516664222315 31.405304770366204 29.23116828337359 17.307010282037886 4 34.77764179567963 23.03901848533666 20.10060520450909 22.08273451447462 5 22.657172206280283 25.909089531751395 24.597060151446744 26.83667811052158 6 22.55434548757339 27.53680858565798 24.71574122545837 25.193104701310265 7 23.081727465223192 26.050600753654034 25.85392104934628 25.01375073177649 8 22.92876283987714 25.691462844519357 26.99245888457622 24.387315431027286 9 23.01478765136268 27.943309861928995 25.77526236400009 23.266640122708235 10-14 23.63690483087658 25.92558376669627 25.538110929501862 24.899400472925286 15-19 22.69295152827573 25.999412277637017 26.56127117156351 24.74636502252374 20-24 23.03957314448187 25.07062350830729 26.429484570652544 25.4603187765583 25-29 23.00738819246208 26.039363923949495 27.281321516325175 23.671926367263254 30-34 22.764717905101122 27.06025595968683 26.60149168353641 23.573534451675638 35-39 23.16164733812669 26.282820225613936 27.37032766703635 23.185204769223024 40-44 22.775956903854066 27.07585104355304 26.767789297426315 23.38040275516658 45-49 22.997625019014595 27.147848750935204 27.12678232713794 22.72774390291226 50-54 23.08825179185666 26.949011091799335 27.09576208852499 22.866975027819016 55-59 22.841824365086662 27.563168569902608 26.84827465843408 22.746732406576655 60-64 22.824346671535487 26.965349751708967 27.577237129909893 22.633066446845653 65-69 23.277212318691447 27.326410673085462 27.359576239500978 22.036800768722113 70-74 22.75708157939468 27.405817243758314 26.998247727795388 22.838853449051623 75-79 23.17055733046111 27.599995040029 26.72768152016169 22.501766109348196 80-84 22.63307232348217 27.510183496573294 26.773368997489307 23.083375182455235 85-89 23.05280069890939 27.409392795368852 26.869486000677867 22.668320505043887 90-94 22.864260593386703 26.908734225512028 27.150576703541052 23.076428477560217 95-99 22.940203842761917 26.458866625190673 27.21557546140328 23.385354070644127 100 23.82002062187164 25.952979839605927 26.388152403813457 23.838847134708978 >>END_MODULE >>Per base GC content fail #Base %GC 1 63.1718386114132 2 36.11827302416658 3 39.3635269462602 4 56.86037631015425 5 49.49385031680186 6 47.74745018888365 7 48.095478196999686 8 47.31607827090442 9 46.28142777407091 10-14 48.53630530380187 15-19 47.43931655079947 20-24 48.49989192104017 25-29 46.679314559725334 30-34 46.33825235677676 35-39 46.34685210734972 40-44 46.156359659020644 45-49 45.72536892192685 50-54 45.95522681967567 55-59 45.58855677166331 60-64 45.45741311838114 65-69 45.314013087413564 70-74 45.5959350284463 75-79 45.672323439809304 80-84 45.7164475059374 85-89 45.721121203953274 90-94 45.940689070946924 95-99 46.325557913406044 100 47.65886775658061 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 264.0 1 264.5 2 267.0 3 270.5 4 276.5 5 282.0 6 288.0 7 305.0 8 323.0 9 348.0 10 378.5 11 402.5 12 430.0 13 473.5 14 539.0 15 834.0 16 1016.0 17 1056.0 18 1363.5 19 2451.0 20 3673.0 21 4413.0 22 6603.5 23 11813.5 24 22087.0 25 33429.0 26 43280.5 27 52805.0 28 62750.0 29 82677.5 30 112234.0 31 128004.5 32 139761.5 33 159547.0 34 188267.5 35 202900.5 36 192686.0 37 196568.5 38 225928.5 39 263570.0 40 302383.0 41 301224.0 42 275084.0 43 312282.0 44 350896.5 45 342926.0 46 309698.5 47 265764.5 48 262245.5 49 283410.5 50 307652.5 51 334607.0 52 289331.5 53 211732.0 54 188452.0 55 177404.0 56 142497.0 57 115327.0 58 144950.0 59 153907.0 60 141704.0 61 149012.5 62 130605.0 63 108457.5 64 88136.0 65 83297.0 66 105701.0 67 98502.5 68 62249.0 69 45596.5 70 40014.0 71 33692.0 72 29420.0 73 19124.0 74 12978.0 75 14552.5 76 13535.5 77 12482.0 78 9179.5 79 7585.5 80 7130.0 81 6371.5 82 4272.0 83 2939.5 84 2764.0 85 1657.0 86 2869.5 87 2034.0 88 507.0 89 386.5 90 274.5 91 204.5 92 128.0 93 92.0 94 80.5 95 63.0 96 48.0 97 44.0 98 45.0 99 40.5 100 33.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03877199786687351 2 0.010690209368114087 3 0.002763456152798763 4 0.0032603934434336282 5 0.0012726455148941945 6 0.0024604509776353493 7 9.696407892972989E-5 8 0.0011878112626082227 9 4.848209235135603E-5 10-14 3.2240614860038765E-4 15-19 0.011572732673438696 20-24 0.011573959309168939 25-29 0.008872105196835013 30-34 0.010143129179357804 35-39 0.006641910454970866 40-44 0.010546356048472207 45-49 0.010042286489676198 50-54 0.010226266220655717 55-59 0.010004435177441056 60-64 0.03784475969021784 65-69 0.029097679542586366 70-74 0.017757037491341724 75-79 0.03895278775293981 80-84 0.04472921537738828 85-89 0.012167537546665863 90-94 0.0023803126953533048 95-99 0.0070516217804280305 100 0.012948879283616934 >>END_MODULE >>Sequence Length Distribution warn #Length Count 0-1 260.0 2-3 2.0 4-5 18.0 6-7 51.0 8-9 0.0 10-11 6.0 12-13 4.0 14-15 4.0 16-17 33.0 18-19 80.0 20-21 1031.0 22-23 186.0 24-25 745.0 26-27 130.0 28-29 120.0 30-31 240.0 32-33 76.0 34-35 136.0 36-37 91.0 38-39 69.0 40-41 141.0 42-43 82.0 44-45 104.0 46-47 142.0 48-49 134.0 50-51 17798.0 52-53 696.0 54-55 18583.0 56-57 31953.0 58-59 66470.0 60-61 1137.0 62-63 29071.0 64-65 17309.0 66-67 13206.0 68-69 15878.0 70-71 28210.0 72-73 35997.0 74-75 11405.0 76-77 11199.0 78-79 4785.0 80-81 11344.0 82-83 19622.0 84-85 10007.0 86-87 5579.0 88-89 9871.0 90-91 22763.0 92-93 457.0 94-95 8695.0 96-97 178540.0 98-99 0.0 100-101 7676340.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 98.40592427400979 #Duplication Level Relative count 1 100.0 2 13.281986557586448 3 4.355859006721206 4 1.8901493263586875 5 1.0355524467017427 6 0.5702381314436908 7 0.3535476414950883 8 0.25926827042973144 9 0.20300477479395396 10++ 6.89531948541711 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CATGCACTATCCAGGCGCCTTCACCTACTCCCCGACGCCGGTCACCTCGGGCATCGGCATCGG 11851 0.14363455664905223 No Hit GACAACTTGGCCACCGACAGCTGAAGGGCTTTTCACCTGTTGACACAATTGCCAGTCA 11836 0.14345275609637853 No Hit TGACTGGCAATTGTGTCAACAGGTGAAAAGCCCTTCAGCTGTCGGTGGCCAAGTTGTC 11758 0.1425073932224754 No Hit CATGCATCTAAATCTTCTCTGGAGATTATCTCCCTACTGTGTAGGTTAAG 11538 0.13984098511659476 No Hit CCGATGCCGATGCCCGAGGTGACCGGCGTCGGGGAGTAGGTGAAGGCGCCTGGATAGTGCATG 11450 0.1387744218742425 No Hit GATGGCACACACACACAACACAGGGAGCTGGAGCCTCAGTTTCACGCTGA 11410 0.138289620400446 No Hit GAGCTACCATCTGATCTGTCTGTCTTGACCACCCGGAGTCCCACTGTCCCCAGCCAGAATCCCAGTAGACTA 10886 0.13193872109371213 No Hit TAGTCTACTGGGATTCTGGCTGGGGACAGTGGGACTCCGGGTGGTCAAGACAGACAGATCAGATGGTAGCTC 10701 0.12969651427740342 No Hit GATGGCTCCAGCAGCATCCTCAGCACCAACAACGCTACCTTCCAAAACAC 10125 0.12271537305473408 No Hit AGACTCCTCACCTTTGACATAGAGGTGGATGGCGGCGCTGCCTCCCAGGG 10102 0.12243661220730112 No Hit CATGTGTGCTTACCCAGGCTGCAATAAGAGATATTTTAAGCTGTCCCACT 9678 0.11729771658505841 No Hit TTTGCCCAAGACTGGACAGCGGGCACACTTACCAGTGTGCTTCCTGCTGT 9659 0.11706743588500508 No Hit ATTCAGCTGCCAAGTAACTTAGCACACCCATTCTTATAAGATAATGGCAA 9253 0.11214670092597082 No Hit TAATGAGCATGAAGTCACCACACGGAGGAAAATGTAAATGTGTAAACCTC 9197 0.11146797886265575 No Hit CCACCGAGCAAACGCATCTTGCTTTTCACATCTCTCCTCCTACAGCCTTA 8999 0.10906821156736317 No Hit CATGAATCCAGAAGCACTTAACACTGGTGGTGGTGATTTGTCACATATGG 8973 0.10875309060939546 No Hit CATGGTAAAGGGTTTGTGCTAACTGACCTCTTCTTTCCTTGCAGGGCTAA 8745 0.10598972220875551 No Hit GTGCTAATGGACCAGGGTCACAGTTTCAAAACTTGAACAATCCAGTTAGC 8708 0.10554128084549377 No Hit GGCTGTGAGTTGGGAGGTGGGGTCAGTTTGGGACTGAGTGGCTGTGGTAG 8527 0.10334755417656469 No Hit AGATTGTTGAGGGATTGCGAGCTGCAGCCAGAAGGAATGGAGATGTTATA 8516 0.10321423377127065 No Hit CATGCCAGCTACGATTACGAAACCAATCAGCAAAGGAGTGAACAGGGTGT 8508 0.10311727347651137 No Hit GAGGAAAGGCAGATAGTAATCCTTAAAGGCTGAGGATTGGAACCCAGATC 8488 0.10287487273961313 No Hit ACCTATGTTACACCATCTTCAGTGCCAGTCTTGGGCAAAATTGTGCAAGA 8367 0.10140834828137876 No Hit TAAAACTGCATCAAGTCATGGGGCATGTGGAAGGTAGGGAGGCAAGATGA 8284 0.10040238522325108 No Hit >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 3306405 3.1727278 4.776519 75-79 AAAAA 3291015 3.0051918 4.3581595 2 CCCAG 1796275 2.8945365 5.348742 2 CCCCA 1581130 2.5082693 6.0659814 1 CCAGC 1504395 2.424198 5.172347 5 CCTCC 1468400 2.3526528 5.604707 6 TGGGG 1374205 2.3440309 8.151389 3 GGGGG 1190025 2.3438332 5.7783737 4 CTGCC 1404415 2.2856436 5.5608697 7 CCACC 1333830 2.1159582 5.903433 1 GGAAG 1452345 2.103338 5.020593 4 TGGCT 1368410 1.9900762 6.251745 3 CCCTG 1203880 1.959279 5.227167 1 TGCAG 1327710 1.9118322 5.6273212 3 GCCCA 1125525 1.8136828 5.614962 2 GGCTC 1083195 1.7906854 7.3626328 1 TGGCA 1235490 1.7790406 5.104687 3 GCTCC 1002940 1.6322551 7.0667596 2 TGCCC 962470 1.5663913 9.576345 3 TAAAA 1677330 1.5469198 5.920756 1 TGAGG 1011820 1.479958 5.042492 1 CATGG 1021135 1.4703807 36.164043 1 ATGGA 1157425 1.4516885 10.046238 2 GGCCC 746105 1.4020767 5.550292 1 TGGCC 824355 1.3627837 5.163738 3 TGGGT 897415 1.3257035 5.609238 3 ATGGG 898485 1.3141867 11.603185 2 ATGTG 1025655 1.299238 9.604631 2 ATGGC 891535 1.2837636 11.115032 2 ATGAA 1099660 1.1826966 7.850102 2 ATGCC 813715 1.1535048 9.081499 2 TGAGC 784950 1.1302866 5.0294313 1 ATGTT 1014420 1.1128753 6.23479 2 CATGA 873690 1.0787935 23.177553 1 ATGCT 854860 1.066063 8.10213 2 CATGT 846415 1.0555315 27.55346 1 ATGAG 833575 1.0455029 5.3744917 2 ATGGT 778065 0.9856061 6.269948 2 CATGC 688955 0.9766476 28.488892 1 ATGAC 750860 0.9271285 6.2317 2 ATGTA 794520 0.8630314 7.0023484 2 TAATG 751125 0.81589454 5.0900874 1 ATGCA 654045 0.80758566 9.71299 2 TAAGT 687815 0.7471253 6.1564207 1 >>END_MODULE