VEP run statistics
| VEP version (API) | 71 (71) |
| Cache/Database | homo_sapiens_core_71_37 on ensembldb.ensembl.org |
| Species | homo_sapiens |
| Command line options | -i 8016-7-3.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf -o 8016-7-3.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.coding -sift=b -polyphen=b --check_existing --hgnc --protein --no_intergenic --coding_only --force_overwrite --database --numbers --domains |
| Start time | 2013-04-30 14:57:54 |
| End time | 2013-04-30 14:58:08 |
| Run time | 14 seconds |
| Input file (format) | 8016-7-3.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf (VCF) |
| Output file | 8016-7-3.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.coding [text] |
General statistics
| Lines of input read | 294 |
| Variants processed | 165 |
| Variants remaining after filtering | 165 |
| Novel / known variants | 41 (24.8%) / 124 (75.2%) |
| Overlapped genes | 9 |
| Overlapped transcripts | 32 |
| Overlapped regulatory features | - |