VEP run statistics
VEP version (API) | 71 (71) |
Cache/Database | homo_sapiens_core_71_37 on ensembldb.ensembl.org |
Species | homo_sapiens |
Command line options | -i 8016-7-5.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf -o 8016-7-5.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.coding -sift=b -polyphen=b --check_existing --hgnc --protein --no_intergenic --coding_only --force_overwrite --database --numbers --domains |
Start time | 2013-04-30 14:57:57 |
End time | 2013-04-30 14:58:18 |
Run time | 21 seconds |
Input file (format) | 8016-7-5.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf (VCF) |
Output file | 8016-7-5.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.coding [text] |
General statistics
Lines of input read | 357 |
Variants processed | 228 |
Variants remaining after filtering | 228 |
Novel / known variants | 62 (27.2%) / 166 (72.8%) |
Overlapped genes | 13 |
Overlapped transcripts | 50 |
Overlapped regulatory features | - |