VEP run statistics
VEP version (API) | 71 (71) |
Cache/Database | homo_sapiens_core_71_37 on ensembldb.ensembl.org |
Species | homo_sapiens |
Command line options | -i 8016-8-31.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf -o 8016-8-31.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.splice.vcf --vcf -sift=b -polyphen=b --check_existing --hgnc --protein --filter splice --force_overwrite --database |
Start time | 2013-04-30 15:33:02 |
End time | 2013-04-30 15:33:49 |
Run time | 47 seconds |
Input file (format) | 8016-8-31.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf (VCF) |
Output file | 8016-8-31.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.splice.vcf [text] |
General statistics
Lines of input read | 674 |
Variants processed | 545 |
Variants remaining after filtering | 1 |
Novel / known variants | 544 (99.8%) / 1 (0.2%) |
Overlapped genes | 1 |
Overlapped transcripts | 13 |
Overlapped regulatory features | - |