VEP run statistics
| VEP version (API) | 71 (71) |
| Cache/Database | homo_sapiens_core_71_37 on ensembldb.ensembl.org |
| Species | homo_sapiens |
| Command line options | -i 8016-8-46.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf -o 8016-8-46.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.splice -sift=b -polyphen=b --check_existing --hgnc --protein --filter splice --force_overwrite --database |
| Start time | 2013-04-30 15:29:42 |
| End time | 2013-04-30 15:30:30 |
| Run time | 48 seconds |
| Input file (format) | 8016-8-46.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf (VCF) |
| Output file | 8016-8-46.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.splice [text] |
General statistics
| Lines of input read | 680 |
| Variants processed | 551 |
| Variants remaining after filtering | 2 |
| Novel / known variants | 549 (99.6%) / 2 (0.4%) |
| Overlapped genes | 2 |
| Overlapped transcripts | 17 |
| Overlapped regulatory features | - |