VEP run statistics
| VEP version (API) | 71 (71) |
| Cache/Database | homo_sapiens_core_71_37 on ensembldb.ensembl.org |
| Species | homo_sapiens |
| Command line options | -i 8016-8-48.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf -o 8016-8-48.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.splice.vcf --vcf -sift=b -polyphen=b --check_existing --hgnc --protein --filter splice --force_overwrite --database |
| Start time | 2013-04-30 15:35:15 |
| End time | 2013-04-30 15:35:54 |
| Run time | 39 seconds |
| Input file (format) | 8016-8-48.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf (VCF) |
| Output file | 8016-8-48.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.splice.vcf [text] |
General statistics
| Lines of input read | 594 |
| Variants processed | 465 |
| Variants remaining after filtering | 1 |
| Novel / known variants | 464 (99.8%) / 1 (0.2%) |
| Overlapped genes | 1 |
| Overlapped transcripts | 13 |
| Overlapped regulatory features | - |