VEP run statistics
VEP version (API) | 71 (71) |
Cache/Database | homo_sapiens_core_71_37 on ensembldb.ensembl.org |
Species | homo_sapiens |
Command line options | -i 8016-8-52.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf -o 8016-8-52.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.coding.vcf --vcf -sift=b -polyphen=b --check_existing --hgnc --protein --no_intergenic --coding_only --force_overwrite --database --numbers --domains |
Start time | 2013-04-30 15:09:04 |
End time | 2013-04-30 15:09:44 |
Run time | 40 seconds |
Input file (format) | 8016-8-52.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf (VCF) |
Output file | 8016-8-52.h.sapiens.aligned_S_MDup.GATK_sorted_realigned.recal.SNP.filtered.vcf.VEP2.9.coding.vcf [text] |
General statistics
Lines of input read | 450 |
Variants processed | 321 |
Variants remaining after filtering | 321 |
Novel / known variants | 153 (47.7%) / 168 (52.3%) |
Overlapped genes | 10 |
Overlapped transcripts | 33 |
Overlapped regulatory features | - |