NA18507.snp.gz ============== Each line consists of chromosome, position, reference base, consensus base, Phred-like consensus quality, read depth, the average number of hits of reads covering this position, the highest mapping quality of the reads covering the position, the minimum consensus quality in the 3bp flanking regions at each side of the site (6bp in total), the second best call, log likelihood ratio of the second best and the third best call, and the third best call. NA18507.indel.gz ================ Each line consists of chromosome, position, genotype and the score. The higher the score the more reliable the call.