|
|
Assembled Bases |
N. of Contigs |
N50 |
N. of Mismatches |
N. of Indels |
Identity |
CPU Time (h) |
Assembly from 48X Nanopore Reads |
LQS |
4636840 |
2 |
4624206 |
1677 |
41646 |
99.06% |
8662 |
Falcon |
4562630 |
1 |
4562630 |
2606 |
102872 |
97.70% |
16.2 |
Canu |
4574127 |
1 |
4574127 |
760 |
73623 |
98.39% |
20.2 |
PBcR |
4567749 |
1 |
4567749 |
982 |
80325 |
98.22% |
46.4 |
MiniAsm |
4544438 |
1 |
4544438 |
173356 |
330040 |
88.90% |
0.05 |
SPADES |
4638974 |
1 |
4638974 |
255 |
31 |
99.99% |
19.1 |
Assembly from 20X Nanopore Reads |
Falcon |
4137874 |
23 |
2693898 |
4608 |
107781 |
97.29% |
1.6 |
Canu |
4546300 |
1 |
4546300 |
2141 |
94233 |
97.90% |
6.8 |
PBcR |
4594541 |
2 |
4559105 |
2160 |
94886 |
97.86% |
12.9 |
MiniAsm |
4526673 |
17 |
2921034 |
173127 |
326625 |
88.89% |
0.01 |
SPADES |
4639128 |
3 |
3108521 |
254 |
31 |
99.99% |
24 |
Assembly from 48X Nanopore Reads And Nanopolish: |
LQS |
4685134 |
2 |
4672162 |
903 |
18464 |
99.58% |
375 |
MiniAsm |
4666535 |
1 |
4666535 |
16153 |
51954 |
98.54% |
2540 |
Canu |
4654817 |
1 |
4654817 |
1155 |
18730 |
99.57% |
434 |
Assembly from 25X PacBio Reads |
Falcon |
4621993 |
2 |
4196046 |
457 |
10898 |
99.75% |
1.4 |
Canu |
4663990 |
1 |
4663990 |
20 |
3903 |
99.91% |
2.8 |
PBcR |
4638751 |
2 |
3746511 |
48 |
3368 |
99.93% |
7.2 |
MiniAsm |
4830837 |
1 |
4830837 |
81535 |
432590 |
89.33% |
0.02 |
SPADES |
4638975 |
1 |
4638975 |
254 |
30 |
99.99% |
19 |
Assembly from 20X PacBio Reads |
Falcon |
4036562 |
47 |
145816 |
459 |
12422 |
99.68% |
0.8 |
Canu |
4637297 |
1 |
4637297 |
90 |
7736 |
99.83% |
2.6 |
PBcR |
4649987 |
1 |
4649987 |
112 |
7240 |
99.84% |
5.4 |
MiniAsm |
4777699 |
9 |
917934 |
75726 |
419198 |
89.46% |
0.01 |
SPADES |
4638975 |
1 |
4638975 |
254 |
30 |
99.99% |
18.9 |