Assembled Bases N. of Contigs N50 N. of Mismatches N. of Indels Identity CPU Time (h)
Assembly from 48X Nanopore Reads LQS 4636840 2 4624206 1677 41646 99.06% 8662
Falcon 4562630 1 4562630 2606 102872 97.70% 16.2
Canu 4574127 1 4574127 760 73623 98.39% 20.2
PBcR 4567749 1 4567749 982 80325 98.22% 46.4
MiniAsm 4544438 1 4544438 173356 330040 88.90% 0.05
SPADES 4638974 1 4638974 255 31 99.99% 19.1
Assembly from 20X Nanopore Reads Falcon 4137874 23 2693898 4608 107781 97.29% 1.6
Canu 4546300 1 4546300 2141 94233 97.90% 6.8
PBcR 4594541 2 4559105 2160 94886 97.86% 12.9
MiniAsm 4526673 17 2921034 173127 326625 88.89% 0.01
SPADES 4639128 3 3108521 254 31 99.99% 24
Assembly from 48X Nanopore Reads And Nanopolish: LQS 4685134 2 4672162 903 18464 99.58% 375
MiniAsm 4666535 1 4666535 16153 51954 98.54% 2540
Canu 4654817 1 4654817 1155 18730 99.57% 434
Assembly from 25X PacBio Reads Falcon 4621993 2 4196046 457 10898 99.75% 1.4
Canu 4663990 1 4663990 20 3903 99.91% 2.8
PBcR 4638751 2 3746511 48 3368 99.93% 7.2
MiniAsm 4830837 1 4830837 81535 432590 89.33% 0.02
SPADES 4638975 1 4638975 254 30 99.99% 19
Assembly from 20X PacBio Reads Falcon 4036562 47 145816 459 12422 99.68% 0.8
Canu 4637297 1 4637297 90 7736 99.83% 2.6
PBcR 4649987 1 4649987 112 7240 99.84% 5.4
MiniAsm 4777699 9 917934 75726 419198 89.46% 0.01
SPADES 4638975 1 4638975 254 30 99.99% 18.9